Query 006126
Match_columns 660
No_of_seqs 761 out of 4287
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 18:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0275 Conserved WD40 repeat- 100.0 4.2E-63 9.1E-68 456.6 23.7 459 64-632 6-508 (508)
2 KOG0293 WD40 repeat-containing 100.0 2.5E-61 5.4E-66 458.4 27.5 457 64-635 16-515 (519)
3 KOG0271 Notchless-like WD40 re 100.0 3.1E-52 6.7E-57 393.0 28.8 327 244-631 107-479 (480)
4 KOG0273 Beta-transducin family 100.0 9E-47 1.9E-51 365.4 31.7 480 63-633 3-523 (524)
5 KOG0271 Notchless-like WD40 re 100.0 7.4E-43 1.6E-47 329.6 25.1 324 204-578 107-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-42 1.2E-46 328.2 23.2 278 310-632 174-459 (459)
7 KOG0286 G-protein beta subunit 100.0 4.9E-40 1.1E-44 300.7 31.8 290 245-578 48-343 (343)
8 KOG0272 U4/U6 small nuclear ri 100.0 2E-41 4.3E-46 324.4 23.5 270 268-578 181-458 (459)
9 KOG0286 G-protein beta subunit 100.0 9.8E-39 2.1E-43 292.2 32.3 280 309-631 53-343 (343)
10 KOG0279 G protein beta subunit 100.0 2.1E-38 4.5E-43 288.5 32.8 295 304-634 10-314 (315)
11 KOG0318 WD40 repeat stress pro 100.0 1.8E-36 3.9E-41 297.6 38.8 352 268-636 65-563 (603)
12 KOG0291 WD40-repeat-containing 100.0 2.2E-36 4.8E-41 308.4 37.9 328 267-635 312-711 (893)
13 KOG0291 WD40-repeat-containing 100.0 5.8E-36 1.3E-40 305.3 40.5 341 268-637 151-554 (893)
14 KOG0295 WD40 repeat-containing 100.0 2.7E-37 5.8E-42 290.8 25.3 271 269-579 115-405 (406)
15 KOG0279 G protein beta subunit 100.0 2.6E-36 5.6E-41 274.9 30.3 286 247-580 10-313 (315)
16 KOG0265 U5 snRNP-specific prot 100.0 3.5E-36 7.6E-41 276.6 27.2 281 308-631 44-336 (338)
17 KOG0318 WD40 repeat stress pro 100.0 4.4E-34 9.6E-39 280.8 40.7 340 268-633 196-602 (603)
18 KOG0315 G-protein beta subunit 100.0 7.3E-35 1.6E-39 260.9 28.9 273 324-641 11-298 (311)
19 KOG0319 WD40-repeat-containing 100.0 3.6E-35 7.8E-40 299.5 29.5 240 374-635 363-621 (775)
20 KOG0315 G-protein beta subunit 100.0 2.1E-34 4.6E-39 258.0 30.7 279 275-589 11-297 (311)
21 KOG0645 WD40 repeat protein [G 100.0 4.9E-34 1.1E-38 258.9 31.7 289 309-633 12-311 (312)
22 KOG0296 Angio-associated migra 100.0 5E-34 1.1E-38 269.0 32.5 331 244-633 56-398 (399)
23 KOG0282 mRNA splicing factor [ 100.0 5.8E-36 1.3E-40 291.8 19.1 283 308-631 211-503 (503)
24 KOG0284 Polyadenylation factor 100.0 3.2E-36 7E-41 287.3 16.9 278 311-633 96-380 (464)
25 KOG0295 WD40 repeat-containing 100.0 7.1E-35 1.5E-39 274.5 24.4 279 309-632 106-405 (406)
26 KOG0263 Transcription initiati 100.0 1.1E-34 2.3E-39 299.4 27.3 259 311-582 378-651 (707)
27 KOG0273 Beta-transducin family 100.0 6.1E-34 1.3E-38 276.5 30.8 275 263-580 236-523 (524)
28 KOG0284 Polyadenylation factor 100.0 2E-35 4.2E-40 282.0 18.2 273 268-580 102-380 (464)
29 KOG0285 Pleiotropic regulator 100.0 4.3E-34 9.3E-39 268.2 25.9 289 308-634 148-440 (460)
30 KOG0266 WD40 repeat-containing 100.0 3.4E-33 7.3E-38 297.2 33.4 288 310-633 158-454 (456)
31 KOG0263 Transcription initiati 100.0 5E-34 1.1E-38 294.5 25.6 240 264-537 380-650 (707)
32 KOG0319 WD40-repeat-containing 100.0 1E-32 2.2E-37 281.6 33.5 344 268-637 68-581 (775)
33 KOG0316 Conserved WD40 repeat- 100.0 4.4E-33 9.5E-38 247.5 25.8 276 310-632 16-298 (307)
34 KOG0640 mRNA cleavage stimulat 100.0 8.6E-33 1.9E-37 254.8 27.4 301 310-633 111-426 (430)
35 KOG0645 WD40 repeat protein [G 100.0 3.3E-32 7.1E-37 247.1 30.5 272 269-580 21-311 (312)
36 PLN00181 protein SPA1-RELATED; 100.0 8.4E-32 1.8E-36 308.0 40.3 318 283-632 457-792 (793)
37 cd00200 WD40 WD40 domain, foun 100.0 1.6E-31 3.6E-36 268.3 37.4 278 309-631 7-289 (289)
38 KOG0306 WD40-repeat-containing 100.0 5.9E-32 1.3E-36 276.0 32.3 358 243-637 98-626 (888)
39 KOG0278 Serine/threonine kinas 100.0 2E-33 4.3E-38 251.7 17.8 297 305-648 8-314 (334)
40 KOG0265 U5 snRNP-specific prot 100.0 4.3E-32 9.2E-37 249.8 26.6 277 268-578 53-336 (338)
41 KOG0266 WD40 repeat-containing 100.0 2.6E-31 5.7E-36 282.7 32.0 278 268-580 165-454 (456)
42 KOG0316 Conserved WD40 repeat- 100.0 8.7E-32 1.9E-36 239.2 22.7 242 374-637 15-261 (307)
43 cd00200 WD40 WD40 domain, foun 100.0 3E-30 6.6E-35 259.0 36.8 270 268-578 15-289 (289)
44 KOG0285 Pleiotropic regulator 100.0 1.7E-31 3.7E-36 250.8 25.5 286 245-581 144-440 (460)
45 KOG0276 Vesicle coat complex C 100.0 1.9E-31 4.2E-36 266.9 27.0 275 310-629 12-295 (794)
46 KOG0293 WD40 repeat-containing 100.0 3E-31 6.5E-36 253.5 26.7 422 67-581 51-514 (519)
47 KOG0281 Beta-TrCP (transducin 100.0 2E-32 4.4E-37 255.8 17.1 280 310-638 196-482 (499)
48 KOG0306 WD40-repeat-containing 100.0 3.3E-29 7E-34 256.1 37.5 347 269-647 72-594 (888)
49 KOG0292 Vesicle coat complex C 100.0 4.8E-30 1E-34 265.9 31.4 325 268-634 15-398 (1202)
50 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 270.4 26.3 284 310-633 8-321 (1202)
51 PLN00181 protein SPA1-RELATED; 100.0 2E-29 4.4E-34 288.4 38.8 281 267-579 488-792 (793)
52 KOG0296 Angio-associated migra 100.0 8.1E-30 1.7E-34 240.7 27.8 287 310-640 63-363 (399)
53 KOG0276 Vesicle coat complex C 100.0 1.4E-29 2.9E-34 253.7 30.1 267 268-575 19-294 (794)
54 KOG0281 Beta-TrCP (transducin 100.0 1.6E-31 3.6E-36 249.8 15.1 266 272-585 205-482 (499)
55 KOG0283 WD40 repeat-containing 100.0 3E-30 6.5E-35 269.0 26.0 267 309-581 265-577 (712)
56 KOG1407 WD40 repeat protein [F 100.0 3.2E-29 7E-34 226.4 28.0 279 309-633 18-311 (313)
57 KOG0282 mRNA splicing factor [ 100.0 9.1E-31 2E-35 255.6 18.1 290 242-578 204-503 (503)
58 KOG0973 Histone transcription 100.0 1.3E-29 2.8E-34 270.7 27.6 311 268-637 19-359 (942)
59 KOG0313 Microtubule binding pr 100.0 3.3E-29 7.2E-34 237.6 26.8 273 310-633 104-418 (423)
60 KOG0313 Microtubule binding pr 100.0 4.1E-29 9E-34 236.9 27.3 270 274-580 115-418 (423)
61 KOG0275 Conserved WD40 repeat- 100.0 1.8E-30 4E-35 240.6 17.6 279 268-578 219-507 (508)
62 KOG1408 WD40 repeat protein [F 100.0 7.7E-29 1.7E-33 251.4 30.0 352 264-634 326-714 (1080)
63 KOG0772 Uncharacterized conser 100.0 5.1E-29 1.1E-33 244.5 25.2 294 310-636 166-491 (641)
64 KOG1446 Histone H3 (Lys4) meth 100.0 1.7E-27 3.6E-32 222.0 33.5 284 310-636 13-306 (311)
65 KOG0288 WD40 repeat protein Ti 100.0 5E-30 1.1E-34 245.5 17.0 279 310-631 174-459 (459)
66 KOG0643 Translation initiation 100.0 1.1E-28 2.3E-33 223.7 23.7 288 308-634 7-318 (327)
67 KOG0278 Serine/threonine kinas 100.0 2.1E-29 4.5E-34 226.0 17.0 287 247-585 9-302 (334)
68 KOG0310 Conserved WD40 repeat- 100.0 3.7E-28 8E-33 237.9 25.1 279 311-634 26-310 (487)
69 KOG0277 Peroxisomal targeting 100.0 3.8E-28 8.3E-33 218.6 22.5 275 268-579 14-308 (311)
70 KOG0274 Cdc4 and related F-box 100.0 1.1E-27 2.4E-32 253.7 30.2 270 274-588 218-490 (537)
71 KOG0274 Cdc4 and related F-box 100.0 1.9E-27 4.1E-32 252.0 30.9 277 310-639 207-488 (537)
72 PTZ00421 coronin; Provisional 100.0 1.2E-26 2.6E-31 245.9 36.7 274 310-612 19-313 (493)
73 KOG0294 WD40 repeat-containing 100.0 2.3E-27 4.9E-32 220.1 27.1 240 373-635 40-283 (362)
74 KOG0283 WD40 repeat-containing 100.0 4.2E-28 9.1E-33 253.1 24.3 241 374-634 265-577 (712)
75 KOG0277 Peroxisomal targeting 100.0 4.5E-28 9.7E-33 218.2 21.0 237 375-632 59-308 (311)
76 KOG0772 Uncharacterized conser 100.0 4.9E-28 1.1E-32 237.6 23.0 298 247-578 162-485 (641)
77 KOG0643 Translation initiation 100.0 4.7E-27 1E-31 213.1 26.9 271 268-581 16-318 (327)
78 KOG1539 WD repeat protein [Gen 100.0 2E-26 4.3E-31 238.6 33.6 334 268-633 208-648 (910)
79 KOG0305 Anaphase promoting com 100.0 4.1E-27 8.9E-32 239.9 27.8 272 268-582 183-463 (484)
80 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 235.9 29.6 270 357-645 349-683 (1080)
81 KOG0640 mRNA cleavage stimulat 100.0 3.1E-27 6.8E-32 218.2 21.8 288 265-580 115-426 (430)
82 KOG0641 WD40 repeat protein [G 100.0 1.7E-25 3.8E-30 197.8 31.7 304 310-633 31-349 (350)
83 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-26 1.6E-30 211.0 30.7 244 375-637 13-266 (311)
84 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.7E-30 237.0 36.8 286 269-582 27-333 (493)
85 KOG0308 Conserved WD40 repeat- 100.0 2.6E-27 5.5E-32 238.9 20.8 326 272-637 35-397 (735)
86 KOG0268 Sof1-like rRNA process 100.0 7.5E-28 1.6E-32 226.9 15.9 286 248-589 62-354 (433)
87 KOG0268 Sof1-like rRNA process 100.0 8E-28 1.7E-32 226.8 16.1 289 308-646 63-357 (433)
88 KOG0641 WD40 repeat protein [G 100.0 3.2E-25 6.9E-30 196.1 31.0 292 258-580 28-349 (350)
89 KOG0288 WD40 repeat protein Ti 100.0 2.1E-27 4.5E-32 227.7 18.1 274 267-577 180-458 (459)
90 KOG1407 WD40 repeat protein [F 100.0 1.6E-26 3.5E-31 209.0 22.6 247 374-644 18-272 (313)
91 KOG0305 Anaphase promoting com 100.0 2.2E-26 4.9E-31 234.6 26.3 237 375-635 216-463 (484)
92 KOG0301 Phospholipase A2-activ 99.9 4.9E-26 1.1E-30 231.5 25.9 274 308-634 11-289 (745)
93 KOG0299 U3 snoRNP-associated p 99.9 7.7E-26 1.7E-30 220.0 25.5 291 310-632 141-455 (479)
94 KOG0300 WD40 repeat-containing 99.9 6.5E-26 1.4E-30 210.0 23.4 286 309-635 146-478 (481)
95 KOG0289 mRNA splicing factor [ 99.9 1.9E-25 4.2E-30 215.3 27.5 272 268-579 225-505 (506)
96 KOG0289 mRNA splicing factor [ 99.9 1.9E-25 4.1E-30 215.4 26.8 278 311-632 219-505 (506)
97 KOG0299 U3 snoRNP-associated p 99.9 1.1E-25 2.4E-30 218.9 25.3 268 269-569 149-444 (479)
98 PTZ00420 coronin; Provisional 99.9 7.4E-25 1.6E-29 233.0 34.0 223 394-637 53-297 (568)
99 PTZ00420 coronin; Provisional 99.9 2.6E-24 5.5E-29 228.9 36.7 221 374-613 72-317 (568)
100 KOG2096 WD40 repeat protein [G 99.9 5.7E-25 1.2E-29 204.1 26.5 303 245-578 79-400 (420)
101 KOG2106 Uncharacterized conser 99.9 9.7E-24 2.1E-28 207.1 35.5 347 245-635 97-523 (626)
102 KOG0300 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 207.4 21.5 290 275-582 161-478 (481)
103 KOG1274 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 228.4 29.0 283 309-630 11-297 (933)
104 KOG0310 Conserved WD40 repeat- 99.9 9.9E-25 2.2E-29 214.0 26.2 271 268-581 32-310 (487)
105 KOG2096 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 201.4 25.8 291 309-635 84-404 (420)
106 KOG1063 RNA polymerase II elon 99.9 4.2E-24 9.2E-29 217.3 29.0 365 244-633 183-699 (764)
107 KOG1539 WD repeat protein [Gen 99.9 5.9E-23 1.3E-27 213.1 37.5 339 269-637 119-610 (910)
108 KOG0647 mRNA export protein (c 99.9 9.4E-24 2E-28 195.1 26.4 265 268-569 33-312 (347)
109 KOG0647 mRNA export protein (c 99.9 6.3E-24 1.4E-28 196.2 25.2 270 310-622 26-312 (347)
110 KOG0308 Conserved WD40 repeat- 99.9 3.8E-25 8.2E-30 223.3 18.3 278 316-633 29-327 (735)
111 KOG0639 Transducin-like enhanc 99.9 9.7E-25 2.1E-29 213.7 20.3 279 310-632 418-703 (705)
112 KOG1036 Mitotic spindle checkp 99.9 1.3E-23 2.9E-28 195.0 26.0 267 311-623 13-294 (323)
113 KOG2048 WD40 repeat protein [G 99.9 1.8E-22 4E-27 205.3 36.6 364 263-642 26-558 (691)
114 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.6E-29 212.1 20.7 275 267-579 424-703 (705)
115 KOG0294 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 191.3 28.5 235 308-582 40-283 (362)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.6E-22 9.9E-27 202.3 37.8 277 275-590 2-289 (300)
117 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.3E-28 213.4 26.3 263 271-581 22-289 (745)
118 KOG4283 Transcription-coupled 99.9 1.6E-23 3.5E-28 192.5 24.0 300 310-633 42-365 (397)
119 KOG0264 Nucleosome remodeling 99.9 4.4E-24 9.6E-29 208.0 20.7 251 310-581 123-405 (422)
120 KOG2048 WD40 repeat protein [G 99.9 2.7E-22 5.9E-27 204.1 32.7 288 311-634 25-320 (691)
121 KOG1332 Vesicle coat complex C 99.9 6.2E-24 1.3E-28 190.5 17.7 245 309-581 9-287 (299)
122 KOG0321 WD40 repeat-containing 99.9 2E-23 4.3E-28 210.6 22.6 294 315-635 53-393 (720)
123 KOG0973 Histone transcription 99.9 1.9E-23 4.2E-28 223.7 23.8 259 310-637 12-316 (942)
124 KOG1332 Vesicle coat complex C 99.9 1.2E-23 2.5E-28 188.8 18.4 256 374-644 9-296 (299)
125 KOG1273 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 189.8 23.6 286 314-645 26-333 (405)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-21 3.7E-26 198.1 35.9 270 324-641 2-287 (300)
127 KOG1036 Mitotic spindle checkp 99.9 2.5E-22 5.5E-27 186.5 26.1 264 268-570 19-294 (323)
128 KOG2106 Uncharacterized conser 99.9 2.7E-21 5.8E-26 190.1 34.4 345 261-640 64-484 (626)
129 KOG0646 WD40 repeat protein [G 99.9 5.1E-23 1.1E-27 200.9 22.1 244 386-638 50-312 (476)
130 KOG2055 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 197.1 25.1 284 310-633 212-512 (514)
131 KOG0264 Nucleosome remodeling 99.9 4.5E-23 9.7E-28 201.1 21.0 243 273-536 136-404 (422)
132 KOG2055 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 194.9 25.7 285 264-580 215-512 (514)
133 KOG1063 RNA polymerase II elon 99.9 4.5E-22 9.7E-27 202.7 27.5 335 268-633 322-763 (764)
134 KOG4283 Transcription-coupled 99.9 5.1E-22 1.1E-26 182.7 24.5 278 273-580 55-365 (397)
135 KOG0267 Microtubule severing p 99.9 2.5E-24 5.5E-29 219.8 9.7 229 374-624 26-259 (825)
136 KOG0646 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 196.0 23.1 234 323-589 50-316 (476)
137 KOG1274 WD40 repeat protein [G 99.9 1.5E-21 3.3E-26 205.0 29.4 274 259-577 10-297 (933)
138 KOG0269 WD40 repeat-containing 99.9 6.9E-23 1.5E-27 211.1 19.0 282 269-582 46-342 (839)
139 KOG0269 WD40 repeat-containing 99.9 9.6E-23 2.1E-27 210.0 19.2 289 311-635 39-342 (839)
140 KOG1034 Transcriptional repres 99.9 1.4E-21 3.1E-26 182.6 22.6 293 310-633 37-383 (385)
141 KOG2445 Nuclear pore complex c 99.9 5.3E-21 1.1E-25 177.4 25.2 254 374-635 11-320 (361)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-21 2.7E-26 191.8 22.2 294 277-620 5-309 (673)
143 KOG0650 WD40 repeat nucleolar 99.9 2.4E-21 5.1E-26 194.2 23.6 282 308-630 397-732 (733)
144 KOG0267 Microtubule severing p 99.9 2.9E-23 6.3E-28 212.1 10.1 252 274-572 4-260 (825)
145 KOG4328 WD40 protein [Function 99.9 3.3E-21 7.1E-26 187.7 22.9 292 310-634 185-496 (498)
146 KOG1273 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 175.4 24.3 276 268-582 29-324 (405)
147 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.4E-25 188.3 23.7 304 244-577 392-732 (733)
148 KOG2445 Nuclear pore complex c 99.9 3.9E-20 8.5E-25 171.6 24.5 257 308-589 10-330 (361)
149 KOG2919 Guanine nucleotide-bin 99.9 2.8E-20 6.1E-25 173.5 22.5 275 313-624 51-361 (406)
150 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 182.4 21.4 302 269-586 132-455 (463)
151 KOG0270 WD40 repeat-containing 99.9 5.3E-20 1.1E-24 178.9 23.8 233 386-637 192-453 (463)
152 KOG4378 Nuclear protein COP1 [ 99.9 3.1E-20 6.8E-25 182.1 20.1 239 377-636 35-283 (673)
153 KOG0302 Ribosome Assembly prot 99.8 6.1E-20 1.3E-24 174.7 19.6 244 374-631 149-436 (440)
154 KOG0649 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 155.8 26.4 287 312-631 11-314 (325)
155 KOG1009 Chromatin assembly com 99.8 1.1E-18 2.4E-23 167.9 25.6 297 311-636 13-375 (434)
156 KOG1445 Tumor-specific antigen 99.8 5.3E-19 1.2E-23 178.1 24.1 131 508-651 628-769 (1012)
157 KOG0321 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 180.9 22.0 279 275-582 65-393 (720)
158 KOG1009 Chromatin assembly com 99.8 6.9E-19 1.5E-23 169.3 23.2 292 269-585 20-377 (434)
159 KOG0307 Vesicle coat complex C 99.8 2.7E-20 5.8E-25 200.6 13.9 243 375-636 63-330 (1049)
160 KOG0307 Vesicle coat complex C 99.8 7.9E-20 1.7E-24 197.0 15.5 287 268-583 12-330 (1049)
161 KOG0302 Ribosome Assembly prot 99.8 3.2E-19 7E-24 169.8 17.6 207 413-635 149-380 (440)
162 KOG1538 Uncharacterized conser 99.8 1.4E-18 3.1E-23 175.9 22.2 268 264-580 14-293 (1081)
163 KOG2919 Guanine nucleotide-bin 99.8 3.2E-18 6.9E-23 160.0 22.7 272 269-571 56-361 (406)
164 KOG4328 WD40 protein [Function 99.8 1.4E-18 3E-23 169.6 20.6 250 374-637 184-454 (498)
165 COG2319 FOG: WD40 repeat [Gene 99.8 6.1E-16 1.3E-20 164.4 42.3 324 268-641 71-408 (466)
166 KOG1538 Uncharacterized conser 99.8 3.3E-18 7.2E-23 173.3 21.1 272 313-636 14-296 (1081)
167 KOG1188 WD40 repeat protein [G 99.8 5E-18 1.1E-22 160.0 20.5 277 324-633 41-346 (376)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-15 3.5E-20 161.2 41.1 312 271-634 119-443 (466)
169 KOG1963 WD40 repeat protein [G 99.8 1.6E-16 3.5E-21 167.4 32.0 350 269-633 23-487 (792)
170 KOG0649 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 144.1 25.8 276 269-577 17-313 (325)
171 KOG1034 Transcriptional repres 99.8 7.9E-18 1.7E-22 157.8 18.7 258 371-637 33-341 (385)
172 KOG1517 Guanine nucleotide bin 99.8 7.4E-17 1.6E-21 171.8 27.1 303 261-583 1063-1384(1387)
173 KOG4227 WD40 repeat protein [G 99.8 2.9E-17 6.4E-22 156.8 21.8 312 309-648 54-400 (609)
174 KOG1334 WD40 repeat protein [G 99.8 3.2E-18 7E-23 168.2 14.4 292 309-636 140-469 (559)
175 KOG0303 Actin-binding protein 99.8 2.1E-17 4.6E-22 158.4 18.6 201 374-583 79-297 (472)
176 KOG0322 G-protein beta subunit 99.8 1.8E-17 4E-22 150.8 16.5 284 244-579 6-322 (323)
177 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-17 4.8E-22 165.4 17.5 257 310-639 293-567 (577)
178 PRK11028 6-phosphogluconolacto 99.8 2.7E-15 5.9E-20 154.6 33.8 272 278-580 6-304 (330)
179 KOG1007 WD repeat protein TSSC 99.8 3.5E-17 7.6E-22 150.8 16.6 226 394-634 39-290 (370)
180 KOG4497 Uncharacterized conser 99.8 3.6E-16 7.8E-21 146.6 23.3 302 269-626 55-425 (447)
181 KOG1007 WD repeat protein TSSC 99.7 8E-17 1.7E-21 148.4 18.3 257 258-536 59-361 (370)
182 KOG1517 Guanine nucleotide bin 99.7 4.4E-16 9.5E-21 166.0 25.9 295 311-636 1064-1384(1387)
183 KOG1310 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 157.7 21.3 209 308-538 47-305 (758)
184 KOG1445 Tumor-specific antigen 99.7 6.3E-17 1.4E-21 163.3 18.1 249 269-583 586-847 (1012)
185 KOG0303 Actin-binding protein 99.7 2.8E-16 6E-21 150.8 21.4 230 308-561 78-320 (472)
186 PRK11028 6-phosphogluconolacto 99.7 5.8E-15 1.3E-19 152.1 33.0 271 328-635 7-306 (330)
187 KOG2110 Uncharacterized conser 99.7 1.3E-14 2.9E-19 138.6 30.9 236 311-582 5-250 (391)
188 KOG0642 Cell-cycle nuclear pro 99.7 8.4E-17 1.8E-21 161.3 16.6 274 258-590 290-571 (577)
189 KOG1240 Protein kinase contain 99.7 1E-15 2.3E-20 165.7 26.1 251 309-583 1046-1337(1431)
190 KOG1188 WD40 repeat protein [G 99.7 2.4E-16 5.1E-21 148.8 18.6 276 275-580 41-346 (376)
191 KOG0322 G-protein beta subunit 99.7 4.7E-17 1E-21 148.2 13.4 243 374-632 12-322 (323)
192 KOG0290 Conserved WD40 repeat- 99.7 2.2E-15 4.7E-20 139.2 24.5 284 311-629 44-361 (364)
193 KOG1963 WD40 repeat protein [G 99.7 1.5E-14 3.2E-19 152.8 33.1 332 268-635 166-540 (792)
194 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.9E-20 159.6 26.4 265 284-582 222-518 (555)
195 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.3E-19 139.3 27.6 239 375-636 4-251 (391)
196 KOG1524 WD40 repeat-containing 99.7 6.9E-16 1.5E-20 153.3 18.3 264 310-630 13-283 (737)
197 KOG0644 Uncharacterized conser 99.7 7.7E-17 1.7E-21 167.7 12.1 275 309-637 188-472 (1113)
198 KOG0644 Uncharacterized conser 99.7 2.9E-17 6.4E-22 170.7 8.6 236 374-637 188-430 (1113)
199 KOG4227 WD40 repeat protein [G 99.7 3.9E-15 8.5E-20 142.5 22.2 291 260-580 54-387 (609)
200 KOG1587 Cytoplasmic dynein int 99.7 8.7E-15 1.9E-19 154.5 26.6 246 375-635 241-518 (555)
201 KOG1832 HIV-1 Vpr-binding prot 99.7 3.3E-17 7E-22 171.1 7.6 335 186-580 1012-1398(1516)
202 KOG0290 Conserved WD40 repeat- 99.7 3.1E-15 6.7E-20 138.2 19.6 243 375-635 43-320 (364)
203 KOG2321 WD40 repeat protein [G 99.7 1.7E-14 3.7E-19 144.8 23.7 272 266-581 55-344 (703)
204 KOG1524 WD40 repeat-containing 99.6 8.2E-15 1.8E-19 145.8 18.9 250 269-576 21-282 (737)
205 KOG0771 Prolactin regulatory e 99.6 2.9E-15 6.2E-20 145.8 15.3 198 419-634 148-355 (398)
206 KOG2139 WD40 repeat protein [G 99.6 2.2E-13 4.7E-18 129.8 26.0 283 311-633 98-431 (445)
207 PRK01742 tolB translocation pr 99.6 2.8E-14 6.1E-19 151.8 22.8 206 395-633 184-401 (429)
208 KOG2111 Uncharacterized conser 99.6 1.7E-13 3.7E-18 128.7 24.2 238 379-636 8-259 (346)
209 KOG0771 Prolactin regulatory e 99.6 5E-15 1.1E-19 144.1 14.5 196 380-581 148-355 (398)
210 KOG1334 WD40 repeat protein [G 99.6 5.5E-15 1.2E-19 145.7 14.8 294 261-583 141-469 (559)
211 KOG4497 Uncharacterized conser 99.6 6.4E-14 1.4E-18 131.7 20.9 272 316-635 13-393 (447)
212 PF02239 Cytochrom_D1: Cytochr 99.6 1.7E-12 3.7E-17 133.6 33.3 318 278-644 10-358 (369)
213 KOG2139 WD40 repeat protein [G 99.6 3.2E-13 6.9E-18 128.7 25.3 299 264-580 100-431 (445)
214 KOG2321 WD40 repeat protein [G 99.6 2.1E-13 4.6E-18 137.1 24.6 289 310-639 50-351 (703)
215 KOG2315 Predicted translation 99.6 9.5E-13 2.1E-17 132.6 28.7 318 266-635 38-392 (566)
216 KOG1523 Actin-related protein 99.6 2.1E-13 4.6E-18 128.0 21.7 207 311-583 10-239 (361)
217 PRK01742 tolB translocation pr 99.6 1.5E-13 3.3E-18 146.1 23.3 212 374-612 201-425 (429)
218 KOG1240 Protein kinase contain 99.6 5.3E-13 1.2E-17 145.2 26.5 255 374-637 1046-1338(1431)
219 KOG1272 WD40-repeat-containing 99.6 7.8E-15 1.7E-19 143.8 11.2 281 311-639 129-415 (545)
220 COG5354 Uncharacterized protei 99.6 3.1E-12 6.6E-17 127.4 29.2 327 264-637 34-399 (561)
221 KOG2111 Uncharacterized conser 99.6 3.7E-12 7.9E-17 119.8 28.1 232 268-538 11-258 (346)
222 PRK05137 tolB translocation pr 99.6 1.5E-12 3.2E-17 139.1 28.9 214 396-637 183-416 (435)
223 KOG2394 WD40 protein DMR-N9 [G 99.6 1.9E-13 4.1E-18 136.5 20.0 245 379-636 126-455 (636)
224 KOG1272 WD40-repeat-containing 99.6 1.5E-14 3.3E-19 141.8 11.2 275 263-582 130-411 (545)
225 PF02239 Cytochrom_D1: Cytochr 99.6 4.8E-12 1E-16 130.3 29.5 286 268-589 42-356 (369)
226 PRK05137 tolB translocation pr 99.5 3.7E-12 8E-17 136.0 28.5 217 285-584 183-416 (435)
227 PRK04922 tolB translocation pr 99.5 1.8E-12 3.8E-17 138.3 25.3 213 395-635 184-413 (433)
228 PRK03629 tolB translocation pr 99.5 2.9E-12 6.3E-17 136.0 26.4 212 396-635 180-408 (429)
229 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.9E-18 137.7 14.9 232 408-644 43-314 (758)
230 KOG1523 Actin-related protein 99.5 6.8E-13 1.5E-17 124.7 18.7 215 413-636 8-239 (361)
231 PF10282 Lactonase: Lactonase, 99.5 2.2E-10 4.8E-15 118.2 39.4 285 277-587 2-331 (345)
232 PRK03629 tolB translocation pr 99.5 6.6E-12 1.4E-16 133.3 26.6 212 374-612 196-427 (429)
233 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.8E-17 122.2 18.6 149 460-633 9-179 (194)
234 COG2706 3-carboxymuconate cycl 99.5 3.2E-10 7E-15 109.4 34.9 281 283-587 15-330 (346)
235 PRK02889 tolB translocation pr 99.5 5E-12 1.1E-16 134.4 25.0 210 395-632 176-402 (427)
236 KOG1354 Serine/threonine prote 99.5 6.7E-12 1.5E-16 119.0 21.5 286 267-583 30-362 (433)
237 PF08662 eIF2A: Eukaryotic tra 99.5 5.7E-12 1.2E-16 117.9 20.6 153 420-589 10-187 (194)
238 PRK04922 tolB translocation pr 99.5 1.1E-11 2.4E-16 132.3 25.4 198 374-588 201-418 (433)
239 KOG3881 Uncharacterized conser 99.5 7.8E-12 1.7E-16 120.7 20.7 250 311-587 55-327 (412)
240 KOG3881 Uncharacterized conser 99.5 6.2E-12 1.3E-16 121.4 19.4 216 274-518 115-342 (412)
241 KOG2314 Translation initiation 99.5 3.5E-11 7.6E-16 120.9 25.3 324 267-634 215-574 (698)
242 PRK02889 tolB translocation pr 99.5 3E-11 6.4E-16 128.5 26.8 212 374-612 193-424 (427)
243 PF10282 Lactonase: Lactonase, 99.4 1.2E-09 2.6E-14 112.8 34.8 243 378-635 38-324 (345)
244 TIGR02800 propeller_TolB tol-p 99.4 8.9E-11 1.9E-15 125.4 27.2 211 395-633 170-397 (417)
245 KOG2394 WD40 protein DMR-N9 [G 99.4 5.8E-12 1.3E-16 126.0 15.9 213 271-490 182-456 (636)
246 PRK00178 tolB translocation pr 99.4 3.3E-10 7.2E-15 121.2 27.6 214 396-637 180-410 (430)
247 KOG2315 Predicted translation 99.3 7.4E-10 1.6E-14 112.1 25.9 273 264-586 75-395 (566)
248 PRK04792 tolB translocation pr 99.3 8.7E-10 1.9E-14 117.6 28.1 168 419-612 265-446 (448)
249 KOG0974 WD-repeat protein WDR6 99.3 4.6E-11 1E-15 128.9 17.2 184 428-635 101-290 (967)
250 TIGR03300 assembly_YfgL outer 99.3 3.1E-09 6.8E-14 111.7 30.2 277 322-645 64-350 (377)
251 PRK04792 tolB translocation pr 99.3 6.9E-10 1.5E-14 118.4 25.4 210 396-633 199-425 (448)
252 COG4946 Uncharacterized protei 99.3 7E-09 1.5E-13 102.8 29.6 167 386-567 332-505 (668)
253 COG2706 3-carboxymuconate cycl 99.3 3E-08 6.5E-13 96.0 32.6 250 374-638 37-326 (346)
254 TIGR03300 assembly_YfgL outer 99.3 1.1E-08 2.4E-13 107.6 32.9 296 273-630 64-376 (377)
255 TIGR02800 propeller_TolB tol-p 99.3 2.1E-09 4.5E-14 114.8 27.6 226 285-558 171-416 (417)
256 PRK01029 tolB translocation pr 99.3 1.3E-09 2.9E-14 115.3 25.5 220 396-637 166-407 (428)
257 KOG1354 Serine/threonine prote 99.3 1.1E-10 2.5E-15 110.8 15.1 254 375-636 24-362 (433)
258 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 101.7 31.6 273 284-589 27-339 (352)
259 PRK00178 tolB translocation pr 99.3 2E-09 4.4E-14 115.1 26.7 193 374-582 196-408 (430)
260 KOG2041 WD40 repeat protein [G 99.3 5.6E-10 1.2E-14 115.3 20.6 296 311-633 14-337 (1189)
261 KOG0280 Uncharacterized conser 99.3 1.3E-09 2.9E-14 101.7 21.1 270 283-582 45-335 (339)
262 KOG4547 WD40 repeat-containing 99.3 6.8E-10 1.5E-14 113.2 20.9 197 320-536 2-220 (541)
263 KOG0974 WD-repeat protein WDR6 99.3 1.9E-10 4E-15 124.3 17.7 184 386-581 99-289 (967)
264 KOG1409 Uncharacterized conser 99.2 3.1E-09 6.7E-14 101.3 22.4 233 269-538 31-272 (404)
265 PRK01029 tolB translocation pr 99.2 6.5E-09 1.4E-13 110.1 27.5 217 311-562 184-426 (428)
266 KOG4547 WD40 repeat-containing 99.2 3.5E-09 7.6E-14 108.2 23.2 190 271-487 2-221 (541)
267 TIGR02658 TTQ_MADH_Hv methylam 99.2 7.1E-08 1.5E-12 97.3 32.3 227 394-639 76-336 (352)
268 COG4946 Uncharacterized protei 99.2 9.4E-08 2E-12 95.0 32.1 142 455-620 358-505 (668)
269 PF04762 IKI3: IKI3 family; I 99.2 2.2E-08 4.7E-13 114.5 31.9 339 264-635 77-458 (928)
270 KOG0280 Uncharacterized conser 99.2 6.7E-09 1.5E-13 97.1 20.4 245 376-636 69-336 (339)
271 COG5354 Uncharacterized protei 99.1 4.4E-08 9.5E-13 98.3 27.2 281 258-583 67-398 (561)
272 KOG1064 RAVE (regulator of V-A 99.1 2.8E-10 6.2E-15 128.4 11.9 182 268-489 2214-2401(2439)
273 KOG1064 RAVE (regulator of V-A 99.1 5E-10 1.1E-14 126.5 13.6 174 394-590 2229-2408(2439)
274 PLN02919 haloacid dehalogenase 99.1 1.1E-07 2.5E-12 110.8 32.6 255 380-637 571-892 (1057)
275 KOG1409 Uncharacterized conser 99.1 4.8E-09 1E-13 100.0 17.3 239 374-636 22-273 (404)
276 KOG2041 WD40 repeat protein [G 99.1 5E-08 1.1E-12 101.3 25.5 273 268-579 20-336 (1189)
277 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 100.3 28.4 209 396-635 170-402 (419)
278 KOG4532 WD40-like repeat conta 99.1 4.8E-08 1E-12 90.2 22.0 241 386-636 84-334 (344)
279 PLN02919 haloacid dehalogenase 99.1 1.8E-07 3.9E-12 109.2 32.4 258 315-584 571-892 (1057)
280 KOG4190 Uncharacterized conser 99.0 1.3E-09 2.7E-14 109.6 11.4 271 272-576 745-1032(1034)
281 PF13360 PQQ_2: PQQ-like domai 99.0 1.4E-07 3.1E-12 92.2 26.0 225 394-640 2-237 (238)
282 PRK11138 outer membrane biogen 99.0 5.7E-07 1.2E-11 95.0 31.8 258 322-632 119-393 (394)
283 KOG4190 Uncharacterized conser 99.0 1E-09 2.2E-14 110.3 8.8 220 408-648 728-963 (1034)
284 KOG0309 Conserved WD40 repeat- 99.0 3.6E-09 7.9E-14 110.0 12.3 288 311-634 24-340 (1081)
285 KOG2314 Translation initiation 99.0 3.9E-07 8.4E-12 92.4 26.0 270 313-634 212-526 (698)
286 KOG1912 WD40 repeat protein [G 99.0 4.8E-08 1E-12 102.4 19.6 304 305-636 9-367 (1062)
287 KOG4532 WD40-like repeat conta 99.0 1.7E-07 3.7E-12 86.6 20.7 232 324-582 85-333 (344)
288 PRK11138 outer membrane biogen 99.0 5.5E-07 1.2E-11 95.1 28.1 285 323-643 69-363 (394)
289 KOG0309 Conserved WD40 repeat- 99.0 7.9E-09 1.7E-13 107.5 13.2 280 266-581 28-340 (1081)
290 COG5170 CDC55 Serine/threonine 98.9 2.6E-08 5.7E-13 93.6 14.8 258 310-580 25-367 (460)
291 PF04762 IKI3: IKI3 family; I 98.9 1.3E-06 2.8E-11 100.2 31.3 236 375-633 74-379 (928)
292 PRK04043 tolB translocation pr 98.9 2.5E-06 5.4E-11 89.9 29.0 167 398-582 216-402 (419)
293 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-05 3.1E-10 78.4 32.8 213 381-620 4-242 (246)
294 PF08450 SGL: SMP-30/Gluconola 98.8 9.6E-06 2.1E-10 79.6 30.4 219 316-569 4-244 (246)
295 PF13360 PQQ_2: PQQ-like domai 98.8 2.7E-06 5.8E-11 83.1 26.3 196 385-587 35-237 (238)
296 PF07433 DUF1513: Protein of u 98.8 6.7E-06 1.4E-10 80.1 27.8 216 387-623 18-276 (305)
297 KOG3914 WD repeat protein WDR4 98.8 4.6E-08 1E-12 95.6 12.7 160 459-638 65-228 (390)
298 KOG0882 Cyclophilin-related pe 98.8 1.4E-07 3.1E-12 93.2 15.6 296 310-630 8-369 (558)
299 COG5170 CDC55 Serine/threonine 98.8 3.8E-08 8.3E-13 92.6 10.8 252 375-632 25-366 (460)
300 PF15492 Nbas_N: Neuroblastoma 98.8 4.2E-06 9.1E-11 79.0 24.1 218 421-644 3-272 (282)
301 PF07433 DUF1513: Protein of u 98.8 8.6E-06 1.9E-10 79.4 26.7 230 313-574 6-279 (305)
302 KOG2695 WD40 repeat protein [G 98.8 2.4E-08 5.2E-13 95.4 8.0 164 421-591 217-387 (425)
303 KOG3914 WD repeat protein WDR4 98.7 2.5E-07 5.4E-12 90.6 14.3 149 386-545 74-232 (390)
304 PF15492 Nbas_N: Neuroblastoma 98.7 1.2E-05 2.5E-10 76.1 24.4 203 386-591 9-270 (282)
305 KOG1912 WD40 repeat protein [G 98.7 1.8E-06 3.9E-11 91.0 20.2 240 377-635 16-306 (1062)
306 KOG1832 HIV-1 Vpr-binding prot 98.7 1.5E-08 3.1E-13 107.5 4.7 211 374-618 1099-1316(1516)
307 KOG1920 IkappaB kinase complex 98.6 1.4E-05 3.1E-10 88.9 24.4 237 268-539 74-325 (1265)
308 KOG4714 Nucleoporin [Nuclear s 98.6 7.4E-07 1.6E-11 82.2 11.4 157 310-487 88-255 (319)
309 KOG4714 Nucleoporin [Nuclear s 98.5 8.7E-07 1.9E-11 81.8 11.5 198 418-634 39-255 (319)
310 KOG1645 RING-finger-containing 98.5 3.5E-05 7.6E-10 75.7 22.9 240 374-634 191-462 (463)
311 cd00216 PQQ_DH Dehydrogenases 98.5 7.6E-05 1.7E-09 80.8 28.5 290 323-643 61-434 (488)
312 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00019 4.1E-09 66.8 26.3 141 323-487 23-166 (354)
313 KOG2695 WD40 repeat protein [G 98.5 2.5E-07 5.4E-12 88.6 7.6 159 382-547 217-387 (425)
314 PF06433 Me-amine-dh_H: Methyl 98.5 0.00026 5.6E-09 70.1 28.7 267 284-590 17-330 (342)
315 KOG0882 Cyclophilin-related pe 98.5 9.1E-07 2E-11 87.7 11.3 214 414-637 8-235 (558)
316 KOG1920 IkappaB kinase complex 98.5 0.00014 2.9E-09 81.3 28.5 233 376-632 68-364 (1265)
317 PF00400 WD40: WD domain, G-be 98.5 5.8E-07 1.3E-11 59.8 6.5 39 446-484 1-39 (39)
318 KOG1275 PAB-dependent poly(A) 98.5 3.5E-06 7.5E-11 90.6 15.5 179 386-578 147-340 (1118)
319 KOG2114 Vacuolar assembly/sort 98.4 1.7E-05 3.7E-10 85.1 19.9 203 422-640 30-250 (933)
320 cd00216 PQQ_DH Dehydrogenases 98.4 0.00048 1E-08 74.7 31.9 236 324-590 111-434 (488)
321 PRK02888 nitrous-oxide reducta 98.4 3.6E-05 7.8E-10 82.0 21.0 187 386-581 141-405 (635)
322 KOG2066 Vacuolar assembly/sort 98.4 9E-06 1.9E-10 86.6 15.1 185 375-580 38-233 (846)
323 PF08513 LisH: LisH; InterPro 98.4 3.9E-07 8.5E-12 54.1 2.9 27 66-92 1-27 (27)
324 KOG2066 Vacuolar assembly/sort 98.3 1.9E-05 4.2E-10 84.1 17.4 188 417-634 41-234 (846)
325 PF06433 Me-amine-dh_H: Methyl 98.3 0.0016 3.4E-08 64.7 27.8 243 268-546 41-330 (342)
326 PF00400 WD40: WD domain, G-be 98.3 2.9E-06 6.2E-11 56.4 6.2 38 405-442 1-39 (39)
327 KOG1275 PAB-dependent poly(A) 98.3 2.8E-05 6E-10 83.9 16.6 184 428-637 149-345 (1118)
328 PF04053 Coatomer_WDAD: Coatom 98.3 0.00017 3.6E-09 76.0 22.1 221 311-581 32-263 (443)
329 KOG1645 RING-finger-containing 98.3 6.6E-05 1.4E-09 73.9 17.4 230 397-639 175-425 (463)
330 PF11768 DUF3312: Protein of u 98.2 0.00044 9.6E-09 72.1 24.1 109 377-487 206-330 (545)
331 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.003 6.6E-08 68.8 31.6 294 323-644 69-501 (527)
332 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0078 1.7E-07 65.6 33.9 245 324-590 121-500 (527)
333 KOG3621 WD40 repeat-containing 98.2 0.0003 6.6E-09 74.3 21.7 278 310-636 32-356 (726)
334 KOG2114 Vacuolar assembly/sort 98.1 0.00046 9.9E-09 74.5 22.1 204 378-589 27-252 (933)
335 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0025 5.4E-08 66.2 27.6 267 320-621 1-345 (353)
336 PF11768 DUF3312: Protein of u 98.1 0.00094 2E-08 69.8 23.7 93 530-636 238-332 (545)
337 KOG2659 LisH motif-containing 98.1 8.6E-06 1.9E-10 75.1 7.1 85 63-148 24-117 (228)
338 KOG1008 Uncharacterized conser 98.1 3.7E-06 8E-11 87.1 5.0 249 375-633 55-335 (783)
339 PF04053 Coatomer_WDAD: Coatom 98.1 0.0019 4E-08 68.2 25.1 219 378-636 34-265 (443)
340 PF08596 Lgl_C: Lethal giant l 98.1 0.0018 3.8E-08 67.4 24.3 271 313-624 3-327 (395)
341 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.012 2.5E-07 55.3 29.1 308 275-635 24-353 (354)
342 smart00667 LisH Lissencephaly 98.0 4.9E-06 1.1E-10 53.3 3.3 32 64-95 2-33 (34)
343 KOG1008 Uncharacterized conser 98.0 1.8E-06 3.9E-11 89.4 1.8 204 416-634 57-276 (783)
344 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.3E-07 60.0 28.1 280 317-632 41-380 (386)
345 COG3386 Gluconolactonase [Carb 98.0 0.0047 1E-07 61.8 24.5 185 377-570 66-275 (307)
346 COG0823 TolB Periplasmic compo 97.9 0.0007 1.5E-08 71.1 18.4 178 396-588 174-366 (425)
347 KOG3617 WD40 and TPR repeat-co 97.9 0.0002 4.3E-09 76.8 13.9 100 386-487 27-132 (1416)
348 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.012 2.7E-07 60.9 27.5 242 267-524 47-344 (353)
349 PF04841 Vps16_N: Vps16, N-ter 97.9 0.018 3.9E-07 60.7 28.7 182 396-590 62-256 (410)
350 KOG3617 WD40 and TPR repeat-co 97.9 0.00089 1.9E-08 72.0 17.8 105 315-444 19-131 (1416)
351 PRK02888 nitrous-oxide reducta 97.8 0.0025 5.3E-08 68.4 21.1 181 269-487 199-405 (635)
352 PF14583 Pectate_lyase22: Olig 97.8 0.051 1.1E-06 55.2 28.3 255 359-637 15-332 (386)
353 COG0823 TolB Periplasmic compo 97.8 0.00095 2E-08 70.1 16.9 166 446-636 182-361 (425)
354 PF04841 Vps16_N: Vps16, N-ter 97.7 0.035 7.7E-07 58.5 28.0 186 356-561 63-270 (410)
355 PF05096 Glu_cyclase_2: Glutam 97.7 0.012 2.5E-07 56.6 21.8 199 407-621 35-249 (264)
356 KOG3621 WD40 repeat-containing 97.7 0.00051 1.1E-08 72.7 13.2 203 375-587 32-252 (726)
357 PF06977 SdiA-regulated: SdiA- 97.7 0.037 8.1E-07 53.5 25.1 198 374-577 19-247 (248)
358 PF06977 SdiA-regulated: SdiA- 97.7 0.045 9.8E-07 52.9 25.0 213 410-630 16-247 (248)
359 COG3391 Uncharacterized conser 97.6 0.13 2.7E-06 54.0 30.9 198 418-637 76-287 (381)
360 PF03178 CPSF_A: CPSF A subuni 97.6 0.01 2.2E-07 60.8 20.6 181 436-634 2-203 (321)
361 PF08596 Lgl_C: Lethal giant l 97.6 0.03 6.6E-07 58.3 24.0 208 417-638 3-295 (395)
362 COG3490 Uncharacterized protei 97.6 0.022 4.9E-07 54.2 20.5 217 396-632 92-347 (366)
363 COG3391 Uncharacterized conser 97.6 0.04 8.7E-07 57.7 25.2 203 380-590 77-293 (381)
364 PF03178 CPSF_A: CPSF A subuni 97.5 0.011 2.3E-07 60.6 20.4 112 375-487 87-203 (321)
365 smart00668 CTLH C-terminal to 97.5 0.00014 3E-09 53.2 4.3 52 97-149 4-55 (58)
366 PF00780 CNH: CNH domain; Int 97.5 0.11 2.4E-06 51.8 26.7 230 321-590 5-265 (275)
367 PF00780 CNH: CNH domain; Int 97.5 0.13 2.8E-06 51.2 26.9 224 386-639 7-261 (275)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.028 6E-07 61.9 22.3 202 416-645 350-580 (591)
369 PF02897 Peptidase_S9_N: Proly 97.4 0.2 4.3E-06 53.3 28.4 241 314-586 126-410 (414)
370 KOG1897 Damage-specific DNA bi 97.4 0.38 8.2E-06 53.8 31.1 316 276-634 550-899 (1096)
371 COG3386 Gluconolactonase [Carb 97.3 0.14 3E-06 51.4 23.8 204 394-622 46-274 (307)
372 COG3490 Uncharacterized protei 97.3 0.076 1.6E-06 50.8 20.1 211 419-640 71-317 (366)
373 PF08553 VID27: VID27 cytoplas 97.2 0.008 1.7E-07 67.0 15.8 132 394-535 503-646 (794)
374 KOG4640 Anaphase-promoting com 97.2 0.0019 4.2E-08 67.6 9.6 94 415-517 20-115 (665)
375 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.1E-08 42.0 5.4 39 446-484 2-40 (40)
376 PHA02713 hypothetical protein; 97.1 0.051 1.1E-06 59.9 20.1 197 426-650 303-548 (557)
377 KOG2395 Protein involved in va 97.1 0.034 7.3E-07 57.5 16.8 137 389-536 349-500 (644)
378 PF08553 VID27: VID27 cytoplas 97.1 0.013 2.7E-07 65.5 15.1 141 429-579 497-646 (794)
379 PF02897 Peptidase_S9_N: Proly 97.0 0.55 1.2E-05 49.9 26.8 199 420-637 128-361 (414)
380 KOG2395 Protein involved in va 96.9 0.029 6.3E-07 58.0 14.8 144 428-579 348-499 (644)
381 PF05096 Glu_cyclase_2: Glutam 96.9 0.45 9.9E-06 45.9 23.2 185 378-570 46-250 (264)
382 PRK13616 lipoprotein LpqB; Pro 96.8 0.1 2.2E-06 57.6 19.6 185 377-575 350-563 (591)
383 KOG4499 Ca2+-binding protein R 96.8 0.29 6.3E-06 45.6 18.8 149 416-568 109-272 (310)
384 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.064 1.4E-06 44.1 13.2 97 314-439 2-109 (111)
385 TIGR03074 PQQ_membr_DH membran 96.8 0.21 4.5E-06 56.7 21.8 231 386-641 194-485 (764)
386 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.12 2.5E-06 42.6 14.4 101 459-576 2-110 (111)
387 smart00320 WD40 WD40 repeats. 96.7 0.0051 1.1E-07 39.3 5.7 38 405-442 2-40 (40)
388 KOG4640 Anaphase-promoting com 96.6 0.011 2.5E-07 62.1 9.5 80 550-640 20-99 (665)
389 PF14870 PSII_BNR: Photosynthe 96.5 1 2.3E-05 44.9 33.9 278 311-630 16-301 (302)
390 COG3204 Uncharacterized protei 96.5 0.22 4.8E-06 48.1 16.7 170 452-633 81-263 (316)
391 KOG4441 Proteins containing BT 96.4 0.41 8.8E-06 52.8 21.0 223 395-644 301-555 (571)
392 KOG2079 Vacuolar assembly/sort 96.4 0.079 1.7E-06 59.5 14.9 106 378-485 91-202 (1206)
393 PF12894 Apc4_WD40: Anaphase-p 96.4 0.012 2.6E-07 40.3 5.6 34 605-640 14-47 (47)
394 PHA02713 hypothetical protein; 96.4 0.3 6.5E-06 53.9 19.8 183 386-583 304-536 (557)
395 PF05694 SBP56: 56kDa selenium 96.4 1.5 3.3E-05 45.3 23.5 234 322-569 86-392 (461)
396 TIGR03074 PQQ_membr_DH membran 96.3 1.1 2.4E-05 51.0 23.7 187 386-589 260-486 (764)
397 KOG2444 WD40 repeat protein [G 96.2 0.008 1.7E-07 55.5 5.4 108 471-589 33-141 (238)
398 KOG4499 Ca2+-binding protein R 96.1 1.3 2.7E-05 41.5 20.1 202 394-619 36-270 (310)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 2.4 5.1E-05 44.4 26.6 85 550-641 307-406 (415)
400 COG1520 FOG: WD40-like repeat 95.9 1 2.2E-05 47.1 20.3 205 426-644 68-279 (370)
401 KOG4441 Proteins containing BT 95.8 0.8 1.7E-05 50.6 19.7 194 378-583 324-549 (571)
402 KOG2079 Vacuolar assembly/sort 95.8 0.035 7.6E-07 62.1 9.0 105 519-634 99-204 (1206)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 95.8 3 6.4E-05 43.7 29.6 82 457-546 308-408 (415)
404 PF10168 Nup88: Nuclear pore c 95.6 0.31 6.8E-06 54.7 15.5 91 550-643 84-189 (717)
405 COG4257 Vgb Streptogramin lyas 95.6 1.6 3.5E-05 41.9 17.5 201 418-636 64-265 (353)
406 KOG1897 Damage-specific DNA bi 95.5 5.7 0.00012 45.0 32.2 312 269-634 590-943 (1096)
407 PF12894 Apc4_WD40: Anaphase-p 95.5 0.04 8.6E-07 37.8 5.0 34 550-584 11-44 (47)
408 PF12234 Rav1p_C: RAVE protein 95.4 0.73 1.6E-05 50.5 16.7 113 510-633 32-156 (631)
409 KOG0396 Uncharacterized conser 95.3 0.05 1.1E-06 53.7 6.9 80 65-149 115-206 (389)
410 PF10168 Nup88: Nuclear pore c 95.3 4.3 9.4E-05 45.9 23.0 72 416-487 85-180 (717)
411 COG3823 Glutamine cyclotransfe 95.2 1.3 2.8E-05 40.7 15.0 180 381-568 50-247 (262)
412 PF15390 DUF4613: Domain of un 95.2 0.93 2E-05 48.2 16.0 145 377-536 20-186 (671)
413 PF12234 Rav1p_C: RAVE protein 95.2 0.73 1.6E-05 50.5 16.0 116 417-535 31-155 (631)
414 COG3823 Glutamine cyclotransfe 95.2 1.1 2.4E-05 41.1 14.4 181 426-621 55-247 (262)
415 PHA03098 kelch-like protein; P 95.1 1.5 3.3E-05 48.4 19.1 183 386-583 295-514 (534)
416 PF10647 Gmad1: Lipoprotein Lp 95.1 1.8 3.9E-05 42.4 17.3 150 458-624 25-186 (253)
417 KOG3630 Nuclear pore complex, 95.0 0.55 1.2E-05 53.4 14.7 152 457-621 101-261 (1405)
418 KOG2444 WD40 repeat protein [G 94.8 0.095 2.1E-06 48.6 6.9 102 386-487 70-178 (238)
419 TIGR02604 Piru_Ver_Nterm putat 94.7 1.1 2.4E-05 46.7 15.7 150 457-625 14-205 (367)
420 KOG2280 Vacuolar assembly/sort 94.7 4.1 8.9E-05 44.7 19.7 171 378-561 85-270 (829)
421 PRK10115 protease 2; Provision 94.7 10 0.00022 43.2 31.0 237 379-636 129-397 (686)
422 PF10647 Gmad1: Lipoprotein Lp 94.5 5.3 0.00011 39.1 21.5 146 417-572 25-187 (253)
423 COG3204 Uncharacterized protei 94.5 5.2 0.00011 39.0 21.3 177 412-589 82-271 (316)
424 PF15390 DUF4613: Domain of un 94.3 1.6 3.4E-05 46.5 15.2 156 417-582 21-188 (671)
425 PF05694 SBP56: 56kDa selenium 94.3 5.6 0.00012 41.3 18.7 201 428-635 89-344 (461)
426 PF14727 PHTB1_N: PTHB1 N-term 94.3 8.2 0.00018 40.5 32.4 278 323-639 37-366 (418)
427 COG1520 FOG: WD40-like repeat 94.2 8.1 0.00018 40.3 23.2 198 386-590 68-278 (370)
428 PRK13684 Ycf48-like protein; P 94.2 7.6 0.00017 39.8 31.8 157 456-633 172-331 (334)
429 KOG3630 Nuclear pore complex, 93.9 0.77 1.7E-05 52.3 12.7 124 394-524 123-260 (1405)
430 PF05935 Arylsulfotrans: Aryls 93.8 3.6 7.9E-05 44.5 17.8 133 513-648 153-316 (477)
431 PHA02790 Kelch-like protein; P 93.8 4 8.7E-05 44.3 18.2 172 396-582 288-472 (480)
432 PF05935 Arylsulfotrans: Aryls 93.7 8.7 0.00019 41.6 20.5 147 434-591 126-312 (477)
433 TIGR03118 PEPCTERM_chp_1 conse 93.7 7.6 0.00017 38.2 19.5 208 417-636 24-282 (336)
434 KOG2377 Uncharacterized conser 93.6 1.8 3.8E-05 44.5 13.5 155 269-446 28-187 (657)
435 PF06588 Muskelin_N: Muskelin 93.6 0.043 9.3E-07 49.6 2.1 50 48-97 148-197 (199)
436 PF07995 GSDH: Glucose / Sorbo 93.5 10 0.00022 38.9 25.4 72 550-628 252-330 (331)
437 PHA03098 kelch-like protein; P 93.4 4.9 0.00011 44.3 18.4 182 437-644 312-520 (534)
438 PF13449 Phytase-like: Esteras 93.1 10 0.00022 38.8 18.9 174 456-633 19-249 (326)
439 KOG4460 Nuclear pore complex, 92.7 2.2 4.8E-05 44.6 12.9 93 551-645 104-210 (741)
440 TIGR02604 Piru_Ver_Nterm putat 92.6 4.5 9.8E-05 42.1 15.8 147 418-569 16-202 (367)
441 PLN00033 photosystem II stabil 92.4 16 0.00035 38.3 19.6 151 419-577 242-396 (398)
442 TIGR03118 PEPCTERM_chp_1 conse 92.2 13 0.00028 36.7 23.9 205 379-590 25-289 (336)
443 PF14870 PSII_BNR: Photosynthe 92.2 14 0.0003 37.1 33.1 157 412-577 141-301 (302)
444 PF07569 Hira: TUP1-like enhan 92.2 0.76 1.7E-05 43.8 8.6 74 464-540 18-99 (219)
445 KOG2817 Predicted E3 ubiquitin 92.0 0.71 1.5E-05 46.5 8.3 88 60-148 111-208 (394)
446 COG5167 VID27 Protein involved 92.0 2.7 5.8E-05 43.9 12.4 138 387-536 480-632 (776)
447 KOG2280 Vacuolar assembly/sort 91.9 10 0.00022 41.8 17.2 182 396-590 65-256 (829)
448 PHA02790 Kelch-like protein; P 91.9 11 0.00024 40.9 18.2 184 428-640 274-475 (480)
449 PF08728 CRT10: CRT10; InterP 91.6 6 0.00013 44.1 15.6 106 379-485 103-245 (717)
450 PF03022 MRJP: Major royal jel 91.1 18 0.00039 36.1 18.4 168 396-568 35-253 (287)
451 KOG3616 Selective LIM binding 90.5 8.9 0.00019 42.0 14.9 165 268-447 20-196 (1636)
452 PF02333 Phytase: Phytase; In 90.4 24 0.00052 36.5 22.9 201 421-635 59-292 (381)
453 PLN00033 photosystem II stabil 90.3 26 0.00056 36.8 32.0 151 459-630 241-396 (398)
454 KOG1916 Nuclear protein, conta 90.1 0.45 9.8E-06 52.6 5.2 162 374-541 130-328 (1283)
455 PF08728 CRT10: CRT10; InterP 90.1 12 0.00026 41.8 16.1 143 386-535 49-245 (717)
456 PF07995 GSDH: Glucose / Sorbo 89.7 6.6 0.00014 40.2 13.4 111 509-625 3-135 (331)
457 KOG1916 Nuclear protein, conta 89.6 0.86 1.9E-05 50.6 6.8 69 423-491 243-328 (1283)
458 TIGR03606 non_repeat_PQQ dehyd 89.1 15 0.00032 39.1 15.4 112 456-571 29-166 (454)
459 KOG2247 WD40 repeat-containing 89.0 0.056 1.2E-06 55.5 -2.3 144 460-629 38-184 (615)
460 PF14781 BBS2_N: Ciliary BBSom 88.9 14 0.0003 31.7 13.8 106 422-539 5-128 (136)
461 COG4257 Vgb Streptogramin lyas 88.8 24 0.00052 34.3 20.7 176 386-583 73-265 (353)
462 PF03022 MRJP: Major royal jel 88.7 15 0.00032 36.7 14.6 149 479-634 35-216 (287)
463 PF13449 Phytase-like: Esteras 88.6 31 0.00066 35.3 22.1 151 416-567 20-231 (326)
464 PF10313 DUF2415: Uncharacteri 88.6 1.4 3.1E-05 29.3 4.8 31 457-487 1-34 (43)
465 PRK10115 protease 2; Provision 88.5 51 0.0011 37.6 32.6 240 312-583 127-397 (686)
466 KOG2247 WD40 repeat-containing 88.3 0.089 1.9E-06 54.1 -1.4 149 310-485 33-187 (615)
467 KOG1896 mRNA cleavage and poly 88.2 30 0.00064 40.6 17.5 122 365-487 1086-1214(1366)
468 COG5276 Uncharacterized conser 88.1 28 0.00061 34.1 24.9 198 416-636 87-288 (370)
469 PF14781 BBS2_N: Ciliary BBSom 88.0 16 0.00035 31.3 12.9 117 463-588 5-133 (136)
470 PF07569 Hira: TUP1-like enhan 88.0 3.1 6.8E-05 39.6 8.9 70 515-585 18-100 (219)
471 PF14727 PHTB1_N: PTHB1 N-term 87.9 39 0.00085 35.6 29.7 151 273-443 36-203 (418)
472 smart00036 CNH Domain found in 87.4 35 0.00075 34.4 26.4 232 322-589 12-279 (302)
473 PF10313 DUF2415: Uncharacteri 87.2 3 6.5E-05 27.8 5.6 31 551-581 1-34 (43)
474 PRK13684 Ycf48-like protein; P 87.2 38 0.00082 34.7 29.8 155 415-579 172-330 (334)
475 KOG2377 Uncharacterized conser 87.0 16 0.00035 37.8 13.4 140 461-619 27-169 (657)
476 COG5276 Uncharacterized conser 86.9 33 0.00072 33.7 27.8 265 274-579 96-368 (370)
477 COG5290 IkappaB kinase complex 86.4 18 0.00039 40.1 14.1 134 420-563 206-349 (1243)
478 TIGR03606 non_repeat_PQQ dehyd 85.8 21 0.00045 38.0 14.3 109 509-624 31-166 (454)
479 PF09398 FOP_dimer: FOP N term 85.5 0.8 1.7E-05 35.4 2.7 32 66-97 19-50 (81)
480 PF14761 HPS3_N: Hermansky-Pud 84.9 21 0.00046 33.4 12.1 58 269-332 22-80 (215)
481 COG5290 IkappaB kinase complex 83.8 12 0.00027 41.4 11.4 94 315-427 250-348 (1243)
482 PF12657 TFIIIC_delta: Transcr 83.7 11 0.00023 34.5 9.9 39 605-643 88-132 (173)
483 PF10607 CLTH: CTLH/CRA C-term 83.6 1.4 3E-05 39.0 3.9 50 98-148 5-54 (145)
484 KOG1900 Nuclear pore complex, 83.5 1E+02 0.0022 36.8 19.1 75 413-487 176-273 (1311)
485 COG5167 VID27 Protein involved 83.3 24 0.00053 37.2 12.8 142 428-580 482-632 (776)
486 PF10395 Utp8: Utp8 family; I 83.2 82 0.0018 35.1 23.8 166 455-635 128-307 (670)
487 COG4590 ABC-type uncharacteriz 82.9 18 0.00038 37.5 11.5 161 457-636 221-389 (733)
488 KOG1900 Nuclear pore complex, 82.8 18 0.00038 42.7 12.8 146 433-581 96-273 (1311)
489 PF10214 Rrn6: RNA polymerase 82.6 1E+02 0.0022 35.8 28.6 122 457-581 146-277 (765)
490 TIGR03032 conserved hypothetic 82.0 58 0.0013 32.5 22.0 106 440-561 189-315 (335)
491 PF07250 Glyoxal_oxid_N: Glyox 81.7 26 0.00056 33.8 11.9 144 398-545 49-206 (243)
492 COG3292 Predicted periplasmic 81.4 84 0.0018 34.0 18.1 272 311-629 164-443 (671)
493 TIGR02276 beta_rpt_yvtn 40-res 81.4 5.6 0.00012 26.0 5.4 30 517-546 1-32 (42)
494 PF07250 Glyoxal_oxid_N: Glyox 79.5 29 0.00064 33.5 11.5 144 439-589 49-206 (243)
495 smart00564 PQQ beta-propeller 78.8 3.9 8.5E-05 25.2 3.7 26 616-641 7-32 (33)
496 KOG4460 Nuclear pore complex, 78.8 97 0.0021 33.1 19.4 73 417-489 105-201 (741)
497 PF14761 HPS3_N: Hermansky-Pud 77.9 62 0.0013 30.4 16.1 152 421-579 23-213 (215)
498 COG1770 PtrB Protease II [Amin 77.8 55 0.0012 36.1 13.8 127 508-648 129-271 (682)
499 PF02333 Phytase: Phytase; In 77.0 97 0.0021 32.1 24.7 187 321-537 66-291 (381)
500 PF12657 TFIIIC_delta: Transcr 76.3 14 0.00031 33.6 8.2 31 457-487 86-122 (173)
No 1
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-63 Score=456.56 Aligned_cols=459 Identities=20% Similarity=0.309 Sum_probs=378.2
Q ss_pred cHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc----HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHH
Q 006126 64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQ 139 (660)
Q Consensus 64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~----~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q 139 (660)
.+.+++|||.|||+|+.+..|+++||+|+++++| ++.|.+.|.+|+||.+++.+.++ .++...++++|||
T Consensus 6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq 79 (508)
T KOG0275|consen 6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ 79 (508)
T ss_pred ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence 3568999999999999999999999999999997 89999999999999999999999 8889999999999
Q ss_pred HHHHHhhhcc-------------------CCCCchh-----------hhhchhhhhhhhhccCccccccc--CCCccchh
Q 006126 140 KYLEAVDRQQ-------------------KLPSDFA-----------ERAHLFDDFKVLVERNPMLQDKL--KFPSMDKS 187 (660)
Q Consensus 140 ~~lell~~~e-------------------~~p~~~~-----------~~~~~l~~~~~~~~~~~~l~~~l--~~~~~p~~ 187 (660)
..+|++|..| .+|++|. ++.+.+.+..+ +++|..+++.+ ++..+||+
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssK-EkrRa~IAQ~ls~EV~VVppS 158 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSK-EKRRAVIAQALSGEVHVVPPS 158 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchH-HHHHHHHHHHhcCceEEcChH
Confidence 9999999984 5566653 44444544333 34455557776 66778999
Q ss_pred HHHHHHhhhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCCCCceeecCCCCcee
Q 006126 188 RLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRE 267 (660)
Q Consensus 188 rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 267 (660)
||+.||.||++||. ..+++|+ |..+++|+|....-..
T Consensus 159 RLlaLlGQaLKWQq--HQGLLPP-------------------------------Gt~iDLFRGkAA~K~~---------- 195 (508)
T KOG0275|consen 159 RLLALLGQALKWQQ--HQGLLPP-------------------------------GTTIDLFRGKAAMKDQ---------- 195 (508)
T ss_pred HHHHHHHHHhhhHh--hcCCCCC-------------------------------Cceeeeccchhhhhhh----------
Confidence 99999999999999 6666777 7888899887661110
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
.+....+.....+++ |..+.+.|..|||||+||++|+.||.|.+|++.+++...
T Consensus 196 -----------------------~Ee~~Pt~l~r~IKF---g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK 249 (508)
T KOG0275|consen 196 -----------------------EEERYPTQLARSIKF---GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK 249 (508)
T ss_pred -----------------------HhhhchHHhhhheec---ccccchhheeeCCCCceEeeccccceeeeehhccchhhh
Confidence 000000112222333 247789999999999999999999999999999887644
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~ 423 (660)
. .-|......++ +..+|.|+.|+ ...+++|+ ||.|++|.+.+|.|++.|. .|..+|+|+.|
T Consensus 250 D--------LkYQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F 314 (508)
T KOG0275|consen 250 D--------LKYQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF 314 (508)
T ss_pred h--------hhhhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence 3 23444444443 78899999999 77899999 9999999999999999998 99999999999
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
+.|+ .+++++.|.++++..+.+|++++.++||.+.|+...|.+||..+++++.||+|++|+.++.++..... ..
T Consensus 315 SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk-----~~ 389 (508)
T KOG0275|consen 315 SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK-----PL 389 (508)
T ss_pred ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc-----CC
Confidence 9999 99999999999999999999999999999999999999999999999999999999999965543322 22
Q ss_pred cCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 503 LVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
... .+|+++..-|. ...++++ ..++|+|.++ .|+.++++..+. ..+...+++.||.|.++++.++|+.++.|.+
T Consensus 390 ~~d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 390 GTD--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCc--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 222 67888888874 3455555 7889999999 688888886542 3677888999999999999999999999999
Q ss_pred CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
.+|++...+..+ +.. ++.++.|| ..+.+|+-+.||.+++|.+
T Consensus 467 ~sG~LE~tl~Vh-------Ekd---vIGl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 467 LSGKLERTLPVH-------EKD---VIGLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCceeeeeecc-------ccc---ccccccCc-ccchhhhhcccchhhhcCC
Confidence 999999888754 232 45899999 7899999999999999974
No 2
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-61 Score=458.42 Aligned_cols=457 Identities=16% Similarity=0.245 Sum_probs=369.3
Q ss_pred cHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc---HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHH
Q 006126 64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQK 140 (660)
Q Consensus 64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~---~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 140 (660)
.+.|++|+++|+|.++||.+|+.+||.|+|+... .+.|.+.++.|+|++++..+..+...++.....+.|+ +.||+
T Consensus 16 kk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL-v~kQ~ 94 (519)
T KOG0293|consen 16 KKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL-VNKQI 94 (519)
T ss_pred ccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH-HHHHH
Confidence 4789999999999999999999999999999884 8999999999999999999998876677778888899 99999
Q ss_pred HHHHhhhcc-----------CCCCchh-hhhchhhhhhhh---------------hccCcccccccCC---Ccc--chhH
Q 006126 141 YLEAVDRQQ-----------KLPSDFA-ERAHLFDDFKVL---------------VERNPMLQDKLKF---PSM--DKSR 188 (660)
Q Consensus 141 ~lell~~~e-----------~~p~~~~-~~~~~l~~~~~~---------------~~~~~~l~~~l~~---~~~--p~~r 188 (660)
|||++..+. ..++++. ++.|.+.+.... ...|..|.++++. |.+ |++|
T Consensus 95 fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~rR 174 (519)
T KOG0293|consen 95 FLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKRR 174 (519)
T ss_pred HHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChHH
Confidence 999999772 3344554 565666554332 2234445555533 333 9999
Q ss_pred HHHHHhhhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCCCCceeecCCCCceee
Q 006126 189 LLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRES 268 (660)
Q Consensus 189 L~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 268 (660)
|++|++||+.+|++.|. |||..+. ++ ++.+|.|...-
T Consensus 175 LehLl~qAv~~Q~d~cv--yhnslds-vs----------------------------------------ll~Dh~c~~~q 211 (519)
T KOG0293|consen 175 LEHLLEQAVKYQRDSCV--YHNSLDS-VS----------------------------------------LLSDHFCGRLQ 211 (519)
T ss_pred HHHHHHHHHHHHHhHhH--Hhcccch-hh----------------------------------------hhhhcccCccc
Confidence 99999999999999998 9985222 22 55555555410
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
. +.+-.++ +.+ |+++||.+.||++|+|||+++.|.+..+|.+...
T Consensus 212 i---------------------------p~qt~qi-l~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d----- 256 (519)
T KOG0293|consen 212 I---------------------------PSQTWQI-LQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD----- 256 (519)
T ss_pred C---------------------------Cchhhhh-Hhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----
Confidence 0 1111111 333 9999999999999999999999999999985433
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEc
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILL 424 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~s 424 (660)
.. -.+..++. +|..+|..+.|+ +++|++|+ +..+.+||+.+|.+...+. ++...+.+++|.
T Consensus 257 ------------~~-~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~ 321 (519)
T KOG0293|consen 257 ------------VH-FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWC 321 (519)
T ss_pred ------------cc-eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEc
Confidence 22 12233222 899999999999 78999988 8999999999999988876 456788999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
||| .+++|+.|++|..||+. |..+..+++- ...|.+++.++||+++++.+.|..|++++..+... .. +...
T Consensus 322 pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-----r~-lise 394 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-----RG-LISE 394 (519)
T ss_pred cCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-----hc-cccc
Confidence 999 99999999999999987 5566667663 35699999999999999999999999999987322 21 2223
Q ss_pred cCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECC
Q 006126 503 LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~ 580 (660)
+ .+|++++.|.||+++++. .+..+++||++..+.++.+.++.....+..-||. .+..++++|++|+.|+||+..
T Consensus 395 ~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 395 E----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred c----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 3 479999999999999996 8999999999999999999887667778888997 456899999999999999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+|+++.++. || ...++ +|+|+|.+..++|+||+||+||||.+...
T Consensus 471 sgkll~~Ls-------GH-s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 471 SGKLLAVLS-------GH-SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCceeEeec-------CC-cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999997 65 34455 99999999999999999999999998643
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-52 Score=392.98 Aligned_cols=327 Identities=20% Similarity=0.257 Sum_probs=286.3
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
+...+.||.. |.+. .|+|+|+.||+|+.|.++|+||+.+ +...++.. +|.+.|.|++|+||
T Consensus 107 CssS~~GH~e~Vl~~-----------~fsp~g~~l~tGsGD~TvR~WD~~T-----eTp~~t~K--gH~~WVlcvawsPD 168 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSV-----------QFSPTGSRLVTGSGDTTVRLWDLDT-----ETPLFTCK--GHKNWVLCVAWSPD 168 (480)
T ss_pred eccccCCCCCcEEEE-----------EecCCCceEEecCCCceEEeeccCC-----CCcceeec--CCccEEEEEEECCC
Confidence 4455677776 6665 9999999999999999999999985 22222233 49999999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-------CCEEEEEe-C
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-G 394 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------~~~l~s~~-d 394 (660)
|+.||+|+.||+|++||.++++. +-..+. +|...|++++|. ..+|++++ |
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~---------------------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQ---------------------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred cchhhccccCCeEEEecCCCCCc---------------------cccccc-CcccceeEEeecccccCCCccceecccCC
Confidence 99999999999999888666654 111111 799999999998 56899999 9
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe---------
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--------- 465 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s--------- 465 (660)
|.|+|||+..++++..+.+|..+|+|+.|-.+|++++|+.|++|++|+...|.+.+.+++|...|+.++.+
T Consensus 227 g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence 99999999999999999999999999999988899999999999999999999999999999999999876
Q ss_pred --CCCC-------------------------EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126 466 --LSLN-------------------------VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 518 (660)
Q Consensus 466 --p~~~-------------------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 518 (660)
|.++ .|++|+.|.++.+|+.... .+++. ...+|. .-|+.+.||||
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----kkpi~-rmtgHq---~lVn~V~fSPd 378 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----KKPIT-RMTGHQ---ALVNHVSFSPD 378 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----ccchh-hhhchh---hheeeEEECCC
Confidence 2233 5999999999999997652 24555 567888 69999999999
Q ss_pred CcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC
Q 006126 519 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 597 (660)
Q Consensus 519 ~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g 597 (660)
++++++ +.|..|++||.++|+.+.++.+ |-..|+.++|+.|.++|++|+.|.++++|++++.++...++ |
T Consensus 379 ~r~IASaSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-------G 449 (480)
T KOG0271|consen 379 GRYIASASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-------G 449 (480)
T ss_pred ccEEEEeecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-------C
Confidence 999999 6999999999999999999976 79999999999999999999999999999999999888876 6
Q ss_pred CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
| .+.|+ +|.|+| ||..+++|+.|..+++|.
T Consensus 450 h-~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 H-ADEVF--AVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred C-CceEE--EEEecC-CCceeecCCCceEEEeec
Confidence 6 66677 999999 899999999999999995
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9e-47 Score=365.41 Aligned_cols=480 Identities=16% Similarity=0.158 Sum_probs=337.4
Q ss_pred ccHHHHHHHHHHhhchhhHHHHHHHHhhhccccc-c-------HHHHHHHHhcC-chHhHHHhhhhhcCCCCC-------
Q 006126 63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFF-D-------INYFREYITSG-EWDNAEKYLSAFTNMNDN------- 126 (660)
Q Consensus 63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~-~-------~~~l~~~i~~G-~w~~~~~~l~~~~~~~~~------- 126 (660)
.+++||++||++||+|+||.+||++|+.|++|.. | +..|.+.+++| +|.|++..+..-....+.
T Consensus 3 itsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~~~ 82 (524)
T KOG0273|consen 3 ITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESLSL 82 (524)
T ss_pred ccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCccccccccccch
Confidence 4689999999999999999999999999999966 3 78899999999 777777766432111110
Q ss_pred -cchhhhHHHHHHHHHHHHhhhccCCCCchhhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHhhh-cceeeeee
Q 006126 127 -TYSAKMFSQIQRQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQI-MDWWVPYC 204 (660)
Q Consensus 127 -~~~~~~~~~i~~q~~lell~~~e~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa-~~~q~~~~ 204 (660)
.+-..-..+|.+|+|-|.+..+... .....++.+..- .+.-|+.+ ++|- .+--...
T Consensus 83 ~d~v~~~~~ql~~~~~~e~~s~~~~~-----~~~~~~~~~~~~------------s~s~~ag~----~~~~d~a~~~er- 140 (524)
T KOG0273|consen 83 EDLVMEDVVQLRQQAFREKLSEEQFC-----AQLKIAQDKESG------------STSTPAGS----ISQRDGAKTGER- 140 (524)
T ss_pred hhhccccccccchhhhhhhccccchh-----hhhhhhhhhccC------------CcCCCCCc----cccccchhhcch-
Confidence 1111112235566666666554111 000000000000 01111111 0000 0000000
Q ss_pred eecCCCC-CcccccccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCC-EEEEEe
Q 006126 205 INVMPNA-NNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDAD-SAVCAK 281 (660)
Q Consensus 205 ~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~-~l~s~~ 281 (660)
-.+. .+...++. ......-+.-... +....+.+.. |.. |+.+ +|.|-.. .+++++
T Consensus 141 ---~~n~eed~a~~I~------~~~e~~~i~~~~~-I~~~~~kvl~-~~~~V~~~-----------~WnP~~~~llasg~ 198 (524)
T KOG0273|consen 141 ---TSNGEEDKAMSID------VHTEPMEIDGGVE-IPSSKAKVLR-HESEVFIC-----------AWNPLRDGLLASGS 198 (524)
T ss_pred ---hcccccCcccccc------ccccceeeccccc-ccccceeecc-CCCceEEE-----------ecCchhhhhhhccC
Confidence 0000 00000000 0000000000000 0011222233 322 4444 8999887 899999
Q ss_pred CCCcEEEEeccCcCCCc----ceeee---ecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126 282 SLEKSVNLKLQLINEPS----ECRTL---LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 282 ~dg~i~iwd~~~~~~~~----~~~~~---~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
.|-+.++|++....... .+++. -..+......|++++|+.+|..||+|+.||.+++|+......
T Consensus 199 ~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~--------- 269 (524)
T KOG0273|consen 199 GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI--------- 269 (524)
T ss_pred CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhh---------
Confidence 99999999997310000 01100 001111356899999999999999999999999998655432
Q ss_pred eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEE
Q 006126 355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAF 431 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s 431 (660)
..+- .|+++|.++.|+ |.||++++ |+++.+||..+|+..+.+..|..+...+.|-.+..|++
T Consensus 270 -------------~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t 334 (524)
T KOG0273|consen 270 -------------STLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT 334 (524)
T ss_pred -------------hhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence 2111 699999999999 99999999 99999999999999999999988877899987779999
Q ss_pred EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE
Q 006126 432 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 511 (660)
Q Consensus 432 ~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 511 (660)
++.|+.|+|+-+....++.++.+|.+.|.++.|+|.|.+|++++.|+++++|.+... ...+ -+..|. ..|.
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~-~l~~Hs---kei~ 405 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----NSVH-DLQAHS---KEIY 405 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----cchh-hhhhhc---ccee
Confidence 999999999999999999999999999999999999999999999999999998773 2333 344676 6899
Q ss_pred EEEEecCC---------cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 512 HIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 512 ~~~~sp~~---------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.+.|+|+| ..+++ +.|++|++||+..+.++.++.. |..+|++++|+|+|+++|+|+.||.|.||+.++
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999965 34565 6999999999999999999864 799999999999999999999999999999999
Q ss_pred CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+++.+.+.. +..|. .++|+- +|+.+..+-.||.+++-|+.
T Consensus 484 ~~l~~s~~~---------~~~If--el~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 484 GKLVKSYQG---------TGGIF--ELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred hheeEeecC---------CCeEE--EEEEcC-CCCEEEEEecCCCceEEEec
Confidence 999998762 33344 999999 89999999999999998874
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-43 Score=329.64 Aligned_cols=324 Identities=15% Similarity=0.187 Sum_probs=271.4
Q ss_pred eeecCCCCCcccccccCccccchhhhc--cccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEE
Q 006126 204 CINVMPNANNETISLKDFPTVSNLRYA--SSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCA 280 (660)
Q Consensus 204 ~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~ 280 (660)
|..-++......++....|+.+.+..- .+-.+.....+.+|..+.+||.. |.+. +|||||+.||+|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcv-----------awsPDgk~iASG 175 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCV-----------AWSPDGKKIASG 175 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEE-----------EECCCcchhhcc
Confidence 554455444444444444444333332 55566777788889999999999 7776 999999999999
Q ss_pred eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEeccCCceeeeeecccee
Q 006126 281 KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 355 (660)
Q Consensus 281 ~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-----dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~ 355 (660)
+.||+|++||.++ ++..--.|++ |...|.+++|.| ..++||+++.||.++|||+..+..
T Consensus 176 ~~dg~I~lwdpkt----g~~~g~~l~g--H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---------- 239 (480)
T KOG0271|consen 176 SKDGSIRLWDPKT----GQQIGRALRG--HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---------- 239 (480)
T ss_pred ccCCeEEEecCCC----CCcccccccC--cccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----------
Confidence 9999999999985 4444334654 999999999976 567999999999999998766554
Q ss_pred EEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc---------
Q 006126 356 SQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--------- 424 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s--------- 424 (660)
+..+. ||+.+|+|+.|- ..++++|+ |++|++|+...|.+.+++++|...|+.++.+
T Consensus 240 -----------~~~ls--gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 240 -----------VRTLS--GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred -----------EEEec--cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence 22112 899999999999 88999999 9999999999999999999999999998877
Q ss_pred --CCC--------------------------eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 425 --PQD--------------------------LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 425 --p~~--------------------------~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
|.+ .+++|++|.++.+|+... .+++..+.+|..-|+.+.|+||++++++++
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence 223 499999999999999764 457888999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 554 (660)
.|..|++||.++|+. +. .+.||- +.|+.++|+.|.++|++ +.|.++++||+++.+....+.+ |...|.
T Consensus 387 FDkSVkLW~g~tGk~-----la-sfRGHv---~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG--h~DEVf 455 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKF-----LA-SFRGHV---AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG--HADEVF 455 (480)
T ss_pred cccceeeeeCCCcch-----hh-hhhhcc---ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC--CCceEE
Confidence 999999999999753 33 567888 79999999999999999 5999999999999998888865 799999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEE
Q 006126 555 YATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
++.|+|||..+++|+.|..+++|.
T Consensus 456 ~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.5e-42 Score=328.20 Aligned_cols=278 Identities=15% Similarity=0.212 Sum_probs=252.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C--
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G-- 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~-- 386 (660)
-+.+|..+.||+|++.|+|||-+|.++||+...... +..+. ||...|.++.|+ +
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~l~--gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQTLR--GHTSRVGAAVFHPVDS 230 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEEEe--ccccceeeEEEccCCC
Confidence 578999999999999999999999999998766633 22222 899999999999 3
Q ss_pred -CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 387 -SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 387 -~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
..+++|+ ||++++|++.+..++..+.+|...|..++|+|+| +|++++.|.+-++||++++..+...+||...|.+++
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 4799999 9999999999999999999999999999999999 999999999999999999999988999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 542 (660)
|+|||..+++|+.|..-+|||+++|.. +. ++.+|. .+|.+|+|+|+|..|++ |.|++++|||++..+.+.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~-----im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRC-----IM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY 381 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcE-----EE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccce
Confidence 999999999999999999999999753 34 577898 79999999999999999 599999999999988877
Q ss_pred eecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 543 QLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
++.. |..-|+.++|+| .|.+|++++.|++++||...++.++..+. || ...| .+++.+| |+.+++|+
T Consensus 382 ~ipA--H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-------GH-e~kV--~s~Dis~-d~~~i~t~ 448 (459)
T KOG0272|consen 382 TIPA--HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-------GH-EGKV--ISLDISP-DSQAIATS 448 (459)
T ss_pred eccc--ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-------CC-ccce--EEEEecc-CCceEEEe
Confidence 7754 799999999998 78999999999999999999999999987 66 4444 4999999 89999999
Q ss_pred eCCCeEEEEeC
Q 006126 622 LTNGRVHVIEP 632 (660)
Q Consensus 622 s~Dg~v~iw~~ 632 (660)
+.|.++++|..
T Consensus 449 s~DRT~KLW~~ 459 (459)
T KOG0272|consen 449 SFDRTIKLWRP 459 (459)
T ss_pred ccCceeeeccC
Confidence 99999999963
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=300.74 Aligned_cols=290 Identities=15% Similarity=0.163 Sum_probs=252.8
Q ss_pred cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126 245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 323 (660)
Q Consensus 245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg 323 (660)
.++++||.. |+.+ .|++|+++|++++.||.+.|||..+ +.+...++++ ...|..++|+|.|
T Consensus 48 rr~LkGH~~Ki~~~-----------~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl~----s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAM-----------DWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPLP----SSWVMTCAYSPSG 109 (343)
T ss_pred EEEecccccceeee-----------EecCCcCeEEeeccCCeEEEEEccc---ccceeEEecC----ceeEEEEEECCCC
Confidence 377899987 7777 9999999999999999999999987 5666666664 6799999999999
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS 401 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd 401 (660)
+++|+|+-|+...||++...+. +....+.. ...+|.+.+.|+.|- +..|++++ |.+..+||
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~----------------~g~~~v~r-~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDA----------------EGNVRVSR-ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred CeEEecCcCceeEEEecccccc----------------cccceeee-eecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 9999999999999999874422 00111111 112899999999999 88999999 99999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 402 LETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
+++|+.+..|.+|...|.+++++| ++ .+++|+-|+..++||++.+.++++|.+|...|+++.|.|+|.-+++|+.|++
T Consensus 173 ie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 173 IETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred cccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 999999999999999999999999 77 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 558 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 558 (660)
.++||++..+.+.... |.+....|++++||..|++|.+| .|..+.+||.-.++.+..+.+ |...|.++..
T Consensus 253 cRlyDlRaD~~~a~ys-------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G--HeNRvScl~~ 323 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS-------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG--HENRVSCLGV 323 (343)
T ss_pred eEEEeecCCcEEeeec-------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec--cCCeeEEEEE
Confidence 9999999965332211 21112689999999999999996 889999999989998888865 7999999999
Q ss_pred ccCCCEEEEEecCCeEEEEE
Q 006126 559 SCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 559 s~dg~~l~sg~~dg~I~iwd 578 (660)
+|||.-+++|++|..++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=324.39 Aligned_cols=270 Identities=19% Similarity=0.161 Sum_probs=242.9
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEEeccCCce
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd--g~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
+.||+|++.||||+.+|.+++|+... .... .+|. ||...|.++.|+|. +..+|||+.||++++|++.+...
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~----~~~~-~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQ----CNLL-QTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCC----ccee-EEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 49999999999999999999999974 2222 2354 49999999999997 67899999999999999876543
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
+..+ ++|...|..++|+ |++|++++ |.+-++||+.++..+....+|...|.+++
T Consensus 254 ---------------------l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 254 ---------------------LQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ---------------------hhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 1111 2899999999999 99999999 99999999999999888899999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
|.||| .+++|+.|..-+|||+++|+++..+.+|...|.++.|+|+|..|++|+.|++++|||++.. ..+. +..
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly-~ip 384 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELY-TIP 384 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccce-ecc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999983 3455 556
Q ss_pred ccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 502 GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
+|. +-|+.+.|+| .|.+|++ +.|+++++|..++..+++++.+ |.+.|.++.+++|++++++++.|+++++|.
T Consensus 385 AH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 385 AHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--CccceEEEEeccCCceEEEeccCceeeecc
Confidence 777 6899999999 6788888 6999999999999999999976 799999999999999999999999999995
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.8e-39 Score=292.24 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=250.4
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
||.+.|.++.|++|.++|+++|.||.+.|||.-+..... .+. -....|..++|+ |
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h------------------aip-----l~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH------------------AIP-----LPSSWVMTCAYSPSG 109 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee------------------EEe-----cCceeEEEEEECCCC
Confidence 499999999999999999999999999999865543311 111 256789999999 9
Q ss_pred CEEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 387 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
+++|+|+ |+...||++.+. ...+.+.+|..-+.|+.|-+|+.|++++.|.+..+||+++|+.+..|.+|.+.|
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 9999999 999999999854 456678899999999999997799999999999999999999999999999999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 006126 460 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 537 (660)
Q Consensus 460 ~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~ 537 (660)
.++.++| +++.+++|+.|+..++||++.+ ...+ .+.+|. +.|+++.|.|+|.-+++| .|++.++||++.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999 9999999999999999999995 4445 677888 799999999999999995 889999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.+.+..+.......+|++++||..|++|++|..|..+.+||.-.++.+..+. || ++.|. ++..+| ||..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-------GH-eNRvS--cl~~s~-DG~a 329 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-------GH-ENRVS--CLGVSP-DGMA 329 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-------cc-CCeeE--EEEECC-CCcE
Confidence 9999998766557899999999999999999999999999999999999887 65 55566 999999 8999
Q ss_pred EEEEeCCCeEEEEe
Q 006126 618 IALGLTNGRVHVIE 631 (660)
Q Consensus 618 l~s~s~Dg~v~iw~ 631 (660)
++|||.|.++|||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-38 Score=288.51 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=250.2
Q ss_pred ecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126 304 LLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 382 (660)
Q Consensus 304 ~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 382 (660)
++++ |++.|..++..+.+ +.+++++.|.++.+|++.... .+.|..++.+. ||...|..+
T Consensus 10 tl~g--h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----------------~~~G~~~r~~~--GHsH~v~dv 69 (315)
T KOG0279|consen 10 TLEG--HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----------------IKYGVPVRRLT--GHSHFVSDV 69 (315)
T ss_pred eecC--CCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----------------cccCceeeeee--ccceEecce
Confidence 4554 99999999999874 678899999999999987653 34455554433 899999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cC
Q 006126 383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQ 456 (660)
Q Consensus 383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~ 456 (660)
..+ |++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ .+++|+.|++|++|++.. .+..++.. +.
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999 89999999 9999999999999999999999999999999999 999999999999999875 45544443 37
Q ss_pred CCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 006126 457 NRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 533 (660)
Q Consensus 457 ~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iw 533 (660)
+.|+|+.|+|+ ..++++++.|++|++||+++ ..+.+...||+ +.++.+++||||...++ +.||.+.+|
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEE
Confidence 89999999997 68899999999999999998 33444677888 79999999999999999 599999999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126 534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
|++.++.+..+ ++...|.+++|+|+.-+|+.+. +..|+|||+.++..+..+.+....+ +.......+++++|++
T Consensus 220 dL~~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 220 DLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA- 293 (315)
T ss_pred EccCCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-
Confidence 99999998887 3589999999999987777664 4559999999999988887543222 2223456788999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCC
Q 006126 614 EPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 614 d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
||..|.+|-.|+.|++|.+..
T Consensus 294 dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCcEEEeeecCCcEEEEEeec
Confidence 899999999999999998853
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-36 Score=297.58 Aligned_cols=352 Identities=15% Similarity=0.161 Sum_probs=269.0
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEEeccCC
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN 343 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d----g~i~vw~~~~~ 343 (660)
..|||.|.|+|+|...|+|||||... ...+...+++. -.++|..++|++|++.|++.+.. |.+.+||-.+.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence 48999999999999999999999974 23343333433 47899999999999999988773 45667775433
Q ss_pred ceeee--------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126 344 KQSLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 400 (660)
Q Consensus 344 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw 400 (660)
--... ..+.+.++.+|+-..-++... ...|..-|.|+.|+ |.++++++ ||+|.+|
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s--~r~HskFV~~VRysPDG~~Fat~gsDgki~iy 217 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS--FREHSKFVNCVRYSPDGSRFATAGSDGKIYIY 217 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec--ccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence 22221 233444455555322222221 22688999999999 99999999 9999999
Q ss_pred ECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--------------------------
Q 006126 401 SLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-------------------------- 450 (660)
Q Consensus 401 d~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~-------------------------- 450 (660)
|-.+|+.+..+. +|.+.|.+++|+||+ .+++++.|.+++|||+.++++++
T Consensus 218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS 297 (603)
T KOG0318|consen 218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS 297 (603)
T ss_pred cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE
Confidence 999999999998 899999999999999 99999999999999998665432
Q ss_pred -----------------EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec------eee-----------
Q 006126 451 -----------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KFL----------- 496 (660)
Q Consensus 451 -----------------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~------~~~----------- 496 (660)
.+.||...|+++..+|++++|++|+.||.|.-||..++..-+. ..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 3468999999999999999999999999999999987643210 000
Q ss_pred ---------eee-------------eeccCC---------------------------------CCCCeEEEEEecCCcE
Q 006126 497 ---------HSF-------------QTGLVP---------------------------------ETTIVNHIQFHPDQIH 521 (660)
Q Consensus 497 ---------~~~-------------~~~~~~---------------------------------~~~~v~~~~~sp~~~~ 521 (660)
..+ ..+++| ..-...+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 000 000000 0123456889999999
Q ss_pred EEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 522 LLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 522 l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
+++ +.|+.|+||.+..+..........|..+|++++||||+.|||+|...+.|.+||+.+.+.....- +-|.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHt 530 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHT 530 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeee
Confidence 999 59999999999765544433334589999999999999999999999999999999987633221 1114
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
..+. +++|+| +..++||||-|-.|.||++....
T Consensus 531 akI~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 531 AKIN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred eeEE--EEEeCC-CceEEEeccccceEEEEEccChh
Confidence 4455 999999 88999999999999999998754
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=308.37 Aligned_cols=328 Identities=20% Similarity=0.308 Sum_probs=267.4
Q ss_pred eeEecCCCCEEEEEeCC-CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 267 ESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
.+.|+..|.+||.|+.. |++-||++.. .... |+..||...+.++++||||+++|||+.||.|+|||..++-
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYV---lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf- 383 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYV---LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF- 383 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeec----ccee---eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-
Confidence 35888899999999876 9999999973 2222 4446799999999999999999999999999988765543
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYF 421 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v 421 (660)
+..+.. .|+..|+.+.|+ ++.+++.+ ||+|+.||+...+..++|..+. ....|+
T Consensus 384 --------------------C~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 384 --------------------CFVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred --------------------EEEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 333222 699999999999 88999999 9999999999999999998554 456899
Q ss_pred EEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 422 ILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
+..|.| .+.+|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|+++|.|.+|++||+-... ....++
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEtl 517 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVETL 517 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeeeE
Confidence 999999 888888887 79999999999999999999999999999999999999999999999986631 122212
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC------------------CCCCeEEEEEcc
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK------------------MDLPITYATYSC 560 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~------------------~~~~v~~~~~s~ 560 (660)
... ..+..++|+|+|+.+++ ..||.|.+||...+..+..+.+.. ....++.+++|+
T Consensus 518 ~i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 518 EIR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred eec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC
Confidence 222 46999999999999999 599999999998766654443211 246789999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeEEEeeccccc-------------------------------------CCC------
Q 006126 561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------------------------------QPG------ 597 (660)
Q Consensus 561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------~~g------ 597 (660)
||.+|++|+..+.|.||++.++-+++.+...... .+|
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdl 672 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDL 672 (893)
T ss_pred CCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCc
Confidence 9999999999999999999998877766542211 011
Q ss_pred ---CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 598 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 598 ---h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+....|.+..+.|+| .|+-+|.++..| |.||.+.+.
T Consensus 673 ssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 673 SSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred cccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCCc
Confidence 112356788999999 799999998887 778887654
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=305.33 Aligned_cols=341 Identities=14% Similarity=0.175 Sum_probs=275.9
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce--
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 345 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~-- 345 (660)
+.||.|.++|++|+.|-++++|++.. ...+....+. ||.+.|..+-|..+...+++.+.||.+.+|.......
T Consensus 151 i~Ws~DSr~l~~gsrD~s~rl~~v~~---~k~~~~~~l~--gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~ 225 (893)
T KOG0291|consen 151 IDWSDDSRLLVTGSRDLSARLFGVDG---NKNLFTYALN--GHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPEL 225 (893)
T ss_pred EEeccCCceEEeccccceEEEEEecc---ccccceEecc--CCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccc
Confidence 49999999999999999999999986 2334444454 4999999999999999999999999999999871100
Q ss_pred --------------------ee------e--------eeccce-------------------eEEEecCCCCceeeeccc
Q 006126 346 --------------------SL------E--------EENVNM-------------------ESQLYQPSSKLVMTNDIA 372 (660)
Q Consensus 346 --------------------~~------~--------~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 372 (660)
.. . ..+... ...+|+..+-.++..+.
T Consensus 226 ~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS- 304 (893)
T KOG0291|consen 226 DKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS- 304 (893)
T ss_pred ccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-
Confidence 00 0 000000 11233333333333222
Q ss_pred CCCCCCeEEEEEe--CCEEEEEeC--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126 373 ADPKDSISCFALR--GSHLFSASG--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 373 ~~h~~~v~~v~~s--~~~l~s~~d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~ 447 (660)
-...+|..++|+ |++|+.|+. |++-||+.++...+...++|...+++++++||| ++++|+.||.|+|||..+|-
T Consensus 305 -is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 305 -ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred -cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 134678899999 999999993 799999999998898899999999999999999 99999999999999999999
Q ss_pred eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e
Q 006126 448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 526 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~ 526 (660)
|..+|..|+..|+.+.|+..|+.+++.+.||+|+.||+..... .+ .+....+ ....+++..|.|..+++| .
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fR-Tft~P~p--~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FR-TFTSPEP--IQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----ee-eecCCCc--eeeeEEEEcCCCCEEEeecc
Confidence 9999999999999999999999999999999999999988543 33 2222222 567889999999999885 5
Q ss_pred cC-cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccc
Q 006126 527 EG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 527 d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
|. .|.+|++++|+.+..+.+ |.++|.+++|+|+|..|++|++|.+|++||+-.. ..+..+.. .+.
T Consensus 456 d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd-- 522 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD-- 522 (893)
T ss_pred ceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc--
Confidence 54 799999999999999876 7999999999999999999999999999998654 23344432 222
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++.++|+| ||+.+|+++-||.|.+||+..+..
T Consensus 523 vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 523 VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred eeEEEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence 55999999 899999999999999999987754
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-37 Score=290.82 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=241.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.|.|+-..+++++.|++|++||..+ +++.. .|.+ |++.|..++|+..|++|++++.|-.+++||.++...
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~t----g~~e~-~LrG--Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~--- 184 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTET----GELER-SLRG--HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR--- 184 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccc----hhhhh-hhhc--cccceeEEEEecCccEEEecCCccchhheeHHHHHH---
Confidence 6788888999999999999999985 55533 3544 999999999999999999999999999999765321
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 425 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 425 (660)
+++... +|...|.+++|- |+++++++ |.+|+.|++.+|-++.++.+|...|..+..+.
T Consensus 185 -----------------c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 185 -----------------CIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred -----------------HHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 222222 799999999999 99999999 99999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC---------------CCEEEEEeCCCcEEEEEcCCCe
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
|| ++++++.|.++++|-+.++++...++.|..+|-|++|.|. +.++.+++.|++|++||+.++.
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 99 9999999999999999999999999999999999999663 2589999999999999999963
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
++- ...+|. .+|..++|+|.|+||++ +.|+++++||++++++..++.. |...++++.|..+..++++|
T Consensus 326 -----cL~-tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a--h~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 326 -----CLF-TLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA--HEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred -----EEE-EEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC--CcceeEEEecCCCCceEEec
Confidence 444 467888 79999999999999999 5889999999999999999874 68999999999999999999
Q ss_pred ecCCeEEEEEC
Q 006126 569 CKSGHVKVFDT 579 (660)
Q Consensus 569 ~~dg~I~iwd~ 579 (660)
+-|..+++|.-
T Consensus 395 sVdqt~KvwEc 405 (406)
T KOG0295|consen 395 SVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeec
Confidence 99999999974
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-36 Score=274.87 Aligned_cols=286 Identities=16% Similarity=0.219 Sum_probs=234.2
Q ss_pred cccCCCC-CCceeecCCCCceeeEecCC-CCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126 247 ASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSG 323 (660)
Q Consensus 247 ~~~g~~~-v~~~~~~~~~~~~~~~~spd-g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spdg 323 (660)
+++||.. |..+ ...+. -..+++++.|.++.+|++.... +.+... ..+. ||...|..++.++||
T Consensus 10 tl~gh~d~Vt~l-----------a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~-r~~~--GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 10 TLEGHTDWVTAL-----------AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV-RRLT--GHSHFVSDVVLSSDG 75 (315)
T ss_pred eecCCCceEEEE-----------EeecCCCceEEEcccceEEEEEEeccCccccCcee-eeee--ccceEecceEEccCC
Confidence 4566666 4443 44444 5688999999999999997532 122222 2354 499999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 400 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw 400 (660)
++.++++.|+++++||+.+++. .+.+. ||...|.+++|+ +..+++|+ |.+|++|
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~---------------------t~~f~--GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGES---------------------TRRFV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceEEeccccceEEEEEecCCcE---------------------EEEEE--ecCCceEEEEecCCCceeecCCCcceeeee
Confidence 9999999999999999887643 11111 899999999999 77999999 9999999
Q ss_pred ECCCCeEEEEEcC--CCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 401 SLETFQTLATFAN--PPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 401 d~~~~~~~~~~~~--~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
++.. .+..++.. +...|.|+.|+|+ . .|++++.|++|++||+++-+....+.+|++.++.++++|||..+++|+
T Consensus 133 nt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 133 NTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred eecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 9985 44444443 3789999999998 4 999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC------
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM------ 549 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~------ 549 (660)
.||.+.+||++.++. +. ..+|. ..|.+++|+|+...|+.+.+..|+|||+.++.++..+....-
T Consensus 212 kdg~~~LwdL~~~k~-----ly--sl~a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKN-----LY--SLEAF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred CCceEEEEEccCCce-----eE--eccCC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence 999999999999653 33 22333 589999999999888888888899999999998887765321
Q ss_pred -CCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 550 -DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 550 -~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
.....+++|++||..|++|..|+.|++|.+.
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2345678999999999999999999999875
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-36 Score=276.65 Aligned_cols=281 Identities=14% Similarity=0.195 Sum_probs=243.0
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.||++.|..+.|+|+|.+||+||.|..|.+|++..... ..|-. .+|.++|..+.|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~l-----------kgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVL-----------KGHSGAVMELHGMRD 101 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeee-----------ccccceeEeeeeccC
Confidence 45999999999999999999999999999999665543 12221 1799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 462 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l 462 (660)
++.+++++ |.+|+.||+++|++.+.+++|..-|+++.-+.-| ++.+|+.|+++++||+++...++++. .+..++++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 88999999 9999999999999999999999999999866666 88899999999999999998888876 56789999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC----
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT---- 537 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~---- 537 (660)
.|..++..+++|+-|+.|++||++.. ..+. +..||. ..|+.+..+|+|.++.+ +.|.++++||++-
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred EecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999999999999999999999883 3444 678998 69999999999999999 8999999999874
Q ss_pred CceeeeecCCCCC--CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 538 LNHTSQLVPDKMD--LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 538 ~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
.+++..+.++.|. .....++|+|++..+-+|+.|..+++||......+..++ || ...|+ ++.|+| ..
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh-~gsvn--~~~Fhp-~e 320 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GH-YGSVN--EVDFHP-TE 320 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cc-ceeEE--EeeecC-CC
Confidence 4557778776554 445678999999999999999999999999888777776 66 33344 999999 68
Q ss_pred CEEEEEeCCCeEEEEe
Q 006126 616 NRIALGLTNGRVHVIE 631 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~ 631 (660)
.+|.+++.|.+|++=+
T Consensus 321 ~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLGE 336 (338)
T ss_pred cEEEEeccCceeEeec
Confidence 8999999999998743
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-34 Score=280.82 Aligned_cols=340 Identities=13% Similarity=0.084 Sum_probs=267.8
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC-CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~-~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+.|+|||.++++++.||++.+||-.+ ++.... |. ..+|.+.|.+++|+||++.+++++.|.+++|||+.+.+..
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGkt----ge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKT----GEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCC----ccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 68999999999999999999999885 332221 33 3459999999999999999999999999999999887654
Q ss_pred ee----------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 006126 347 LE----------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 401 (660)
Q Consensus 347 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd 401 (660)
.. ..+....+..+++.......... ||...|+++..+ +.+|++|+ ||.|.-|+
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~--GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS--GHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec--ccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 32 23344455677777766554443 899999999999 88999999 99999999
Q ss_pred CCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc------------e-------------------e
Q 006126 402 LETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------------T-------------------K 449 (660)
Q Consensus 402 ~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~------------~-------------------~ 449 (660)
..+|..-+.. +.|...|.+++.+..+.+++++.|.++++.++..+. + +
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 9998877665 689999999998887778888999999999764211 0 0
Q ss_pred eEeecc--------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126 450 AKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 521 (660)
Q Consensus 450 ~~~~~~--------~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 521 (660)
..++.+ .-...+++++|++..+++|+.|+.|++|.+..+..... . ....|. ++|+++++|||+.+
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---~-~~~~h~---a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---A-KLLEHR---AAITDVAYSPDGAY 501 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce---e-eeeccc---CCceEEEECCCCcE
Confidence 111211 12356889999999999999999999999988653211 1 234565 79999999999999
Q ss_pred EEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 522 LLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 522 l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
|+++ ..+.+.+||+.+.+.... ...-|...|.+++|+|+..++|+|+-|-.|.||+++.....-.+.. .| .
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~-~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn------AH-~ 573 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTN-RWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN------AH-L 573 (603)
T ss_pred EEEeccCCcEEEEEcccCceecc-eeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc------cc-c
Confidence 9997 789999999988776322 2224799999999999999999999999999999987654433321 23 3
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
..++ .+.|-- ...+++.|.|..|++|.+.
T Consensus 574 ~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 574 GGVN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cCce--eEEEec--CceEEeccCcceeEEeccc
Confidence 3355 899964 5789999999999999874
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.3e-35 Score=260.91 Aligned_cols=273 Identities=14% Similarity=0.171 Sum_probs=225.3
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 401 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd 401 (660)
-+|+++|.|.+|++|...++.+ ..+.. ...+.|+.+... ++.||+++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C---------------------~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC---------------------SRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE---------------------EEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 4789999999999887665544 33332 345679999998 7788888899999999
Q ss_pred CCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC
Q 006126 402 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 478 (660)
Q Consensus 402 ~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg 478 (660)
+.++. ++.++.+|...|+++.|..+| .+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98865 588899999999999999999 99999999999999999866666665 789999999999999999999999
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc------eeeeecCCCCCC
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL 551 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~ 551 (660)
.|++||+....... .+ +++.. ..|.++...|||+++++. ..|..++|++-+.. ++..++ .|.+
T Consensus 147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 99999998843211 11 12222 479999999999999996 77999999987643 333343 4789
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
.+..+.+|||+++|++++.|.+++||+.++. +....+. || ...++ .++||. |+.||+||+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999987 3334443 44 45666 999999 89999999999999999
Q ss_pred eCCCCc--eeccC
Q 006126 631 EPLESE--VEWGK 641 (660)
Q Consensus 631 ~~~~~~--~~w~~ 641 (660)
++..++ ..|..
T Consensus 286 ~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 286 DLSAGKEVRQYQG 298 (311)
T ss_pred ccccCceeeecCC
Confidence 999998 45544
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=299.48 Aligned_cols=240 Identities=13% Similarity=0.205 Sum_probs=209.6
Q ss_pred CCCCCeEEEE-Ee-CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126 374 DPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 374 ~h~~~v~~v~-~s-~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~ 444 (660)
||...|.++. |+ |.+|++|+ |.++++|.++.+ .++....+|...|.+++++..+ .|+++|.|+++++|++.
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 7999999999 55 87999999 999999988443 2445567999999999998888 99999999999999987
Q ss_pred CCce-----e----eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126 445 TKKT-----K----AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515 (660)
Q Consensus 445 ~~~~-----~----~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 515 (660)
..+. + .+...|...|+|++++|+.+.+++||.|.+.++|++... .... .+.||. ..|.++.|
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~-vLsGH~---RGvw~V~F 513 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLG-VLSGHT---RGVWCVSF 513 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-----eEEE-EeeCCc---cceEEEEe
Confidence 6211 1 123459999999999999999999999999999999962 2333 778998 69999999
Q ss_pred ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc
Q 006126 516 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 594 (660)
Q Consensus 516 sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~ 594 (660)
+|..+.+++ +.|++|+||.+.+..+++++.+ |...|..+.|-.+|+.|++++.||-|++|+++++++...+..|
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H--- 588 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH--- 588 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---
Confidence 999999999 6999999999999999999976 7999999999999999999999999999999999999999844
Q ss_pred CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 595 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.+.+| +++-+| +..+++||+.||.|.+|.=.+.
T Consensus 589 -----~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 589 -----NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred -----cceeE--EEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 67788 888899 7889999999999999975543
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=257.96 Aligned_cols=279 Identities=14% Similarity=0.167 Sum_probs=231.1
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
-+|++++.|.+||+|... ++.|... ++. ..+.|..+...||+++||+++. ..|++||+.++...
T Consensus 11 viLvsA~YDhTIRfWqa~----tG~C~rT-iqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL----TGICSRT-IQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh----cCeEEEE-Eec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------
Confidence 478999999999999998 4666653 332 3678999999999999888764 57888887766431
Q ss_pred eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126 355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 430 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~ 430 (660)
.+..+ ++|...|.++.|. |+++++|+ ||+++|||++...+.+.++ +..+|+++..+|+. .|+
T Consensus 75 -----------Pv~t~--e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 75 -----------PVATF--EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI 140 (311)
T ss_pred -----------ceeEE--eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence 11111 2799999999999 99999999 9999999999977766665 55999999999999 999
Q ss_pred EEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-eeeeeeeeccCCCCC
Q 006126 431 FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-KFLHSFQTGLVPETT 508 (660)
Q Consensus 431 s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~ 508 (660)
+|..+|.|++||+....+...+.. ....|.++...|||++++.+...|..++|++-+...... .++. .+..|. +
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~---~ 216 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-KFQAHN---G 216 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-heeccc---c
Confidence 999999999999998877666543 457899999999999999999999999999987543222 2333 455677 6
Q ss_pred CeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126 509 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 586 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~ 586 (660)
.+..+.+|||+++|++ +.|.+++||+.++. +.-..+. .|...+..++||.||.||++|+.|+.+++|++..++.+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 8999999999999999 69999999999887 3334443 468999999999999999999999999999999999888
Q ss_pred Eee
Q 006126 587 QIN 589 (660)
Q Consensus 587 ~~~ 589 (660)
.+.
T Consensus 295 qy~ 297 (311)
T KOG0315|consen 295 QYQ 297 (311)
T ss_pred ecC
Confidence 876
No 21
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=258.93 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=232.9
Q ss_pred CCCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 309 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
+|+++|+.++|+|- |..||++|.|+.|++|+...+.. |. + +..+.++|+..|++++|+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~-----c-k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WT-----C-KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EE-----E-EEeccccchheeeeeeecCC
Confidence 48999999999998 89999999999999999764221 11 1 122334799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC---ceeeEeeccCCC
Q 006126 386 GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR 458 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~---~~~~~~~~~~~~ 458 (660)
|++|++++ |.++.||.-.. .+++.++.+|...|.|++|+++| +||+++.|++|.||.+..+ ++...+..|...
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99999999 99999998764 57889999999999999999999 9999999999999998744 567889999999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 537 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~ 537 (660)
|..+.|+|...+|++++.|.+|++|+-..+. ...+.+ .+.+|. +.|.+++|+|.|..|++ +.|++++||-..+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 9999999999999999999999999877321 123444 567777 68999999999999998 5899999998752
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.+. ..|...++.+.|. ...|++++.|+.|++|.-...-....+.........| ...|+ ++.|+|...++
T Consensus 227 -----~~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~~~~ 295 (312)
T KOG0645|consen 227 -----DLS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKVSNR 295 (312)
T ss_pred -----Ccc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCCCCc
Confidence 222 2468899999998 5689999999999999876432222222111111123 33455 99999955789
Q ss_pred EEEEeCCCeEEEEeCC
Q 006126 618 IALGLTNGRVHVIEPL 633 (660)
Q Consensus 618 l~s~s~Dg~v~iw~~~ 633 (660)
|++|++||.|++|.+.
T Consensus 296 L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 296 LASGGDDGIVNFWELE 311 (312)
T ss_pred eeecCCCceEEEEEec
Confidence 9999999999999874
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-34 Score=268.99 Aligned_cols=331 Identities=14% Similarity=0.192 Sum_probs=270.1
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
.+..|..|.. ++.+ +.+|+.+++++|+.|..-.+|+..+ +. ....+. +|++.|.++.||.|
T Consensus 56 S~~tF~~H~~svFav-----------sl~P~~~l~aTGGgDD~AflW~~~~----ge-~~~elt--gHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAV-----------SLHPNNNLVATGGGDDLAFLWDIST----GE-FAGELT--GHKDSVTCCSFSHD 117 (399)
T ss_pred ceeehhhcCCceEEE-----------EeCCCCceEEecCCCceEEEEEccC----Cc-ceeEec--CCCCceEEEEEccC
Confidence 4556777776 5665 8999999999999999999999985 33 223354 49999999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i 399 (660)
|.+||||+.+|.|.||+..++.. .|... ..-..+.-+.|+ +..|+.|+ ||.+..
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~------------~~~~~-----------~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGE------------QWKLD-----------QEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred ceEEEecCCCccEEEEEcccCce------------EEEee-----------cccCceEEEEecccccEEEeecCCCcEEE
Confidence 99999999999999999877764 12110 234557778888 88899999 999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD 477 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d 477 (660)
|.+.++...+.+.+|..++++=.|.|+| +++++..||+|++||+.+++++.++.+ ......++.++..+..++.|+.+
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence 9999988899999999999999999999 999999999999999999999988874 34567889999999999999999
Q ss_pred CcEEEEEcCCCeeeecee--eeeeeeccCCCCCCeEEEEEec---CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 478 AQLCVWDAVGWKKLCSKF--LHSFQTGLVPETTIVNHIQFHP---DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 478 g~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
+.+++-+..+|+.+.... ...+...+. ..+.++.+.| .-.+.|+ +-||+|.|||+...+....+ .|..
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~ 328 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHED 328 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCC
Confidence 999999988877543222 111222333 3444555544 4455666 49999999999887776655 3688
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
.|+.+.|-+ ..+|++++.||.|+.||.++|++...+. || ...|. +++.+| +.++++|+|.|++.+||+
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~-------GH-~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT-------GH-QMGIL--DFALSP-QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe-------cC-chhee--EEEEcC-CCcEEEEecCCCeEEEEe
Confidence 899999998 7899999999999999999999999987 66 44455 999999 899999999999999998
Q ss_pred CC
Q 006126 632 PL 633 (660)
Q Consensus 632 ~~ 633 (660)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 74
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.8e-36 Score=291.77 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=240.5
Q ss_pred CCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126 308 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 385 (660)
+||+..|.++.|.| .+.+|++++.|+.|+||++ |+ .+.+++++. ||..+|.+++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v------------------y~--~~~~lrtf~--gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV------------------YD--DRRCLRTFK--GHRKPVRDASFNN 268 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE------------------ec--Ccceehhhh--cchhhhhhhhccc
Confidence 45999999999999 8999999999999999985 44 344666555 899999999999
Q ss_pred -CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
|..+++++ |+.|++||+++|++...|.. ...++|+.|+|++ .|++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 88999999 99999999999999998853 3457899999999 8999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-- 538 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-- 538 (660)
+.|-++|+++++.+.|+++++|+.+.+-.+ +.+...+. ....++..+|++.++++ +.|+.|.++.+...
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~i-----k~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVPI-----KNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCccc-----hhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 999999999999999999999999885432 21111111 34678999999999999 89999999986532
Q ss_pred -ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 539 -NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 539 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.....+.++.-.+.-..+.|||||.+|++|..||.+.+||.++.+++..+..+ +.+ ++.+.|||.....
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--------~~~--ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--------DQP--CIGVDWHPVEPSK 489 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--------Ccc--eEEEEecCCCcce
Confidence 12234544333566778999999999999999999999999999999988743 333 5589999988899
Q ss_pred EEEEeCCCeEEEEe
Q 006126 618 IALGLTNGRVHVIE 631 (660)
Q Consensus 618 l~s~s~Dg~v~iw~ 631 (660)
+|||+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=287.29 Aligned_cols=278 Identities=17% Similarity=0.218 Sum_probs=239.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
..+|..+.|.|+|+.|++|+..|.+.+|+...-.. ..++ ..|..+|+++.|+ +.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------------Etil-----QaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------------ETIL-----QAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH------------------HHHh-----hhhcccceeEEEccCCCE
Confidence 56899999999999999999999999998532211 0112 2799999999999 889
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
+++|+ +|.|++|+..-. .++.+.. |...|++++|+|++ .|+++++||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 899999998743 4445554 45899999999998 99999999999999999888888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
|....+++++.|..|++||.++++++ . ...+|. ..|..+.|+|++++|++ |.|..++++|+++.+.++++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl-----~-tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCL-----A-TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchh-----h-hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 99999999999999999999997654 3 345666 68999999999999999 79999999999988888888
Q ss_pred cCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 545 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
.+ |...|+++.|+| ...++.+|+.||.|..|.+...+++..+.. +| +..|+ +++||| -|.+|++|+.
T Consensus 303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------AH-d~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------AH-DGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------cc-cccee--eeeccc-cceeEeecCC
Confidence 75 799999999998 457888999999999999986666655543 44 66677 999999 7999999999
Q ss_pred CCeEEEEeCC
Q 006126 624 NGRVHVIEPL 633 (660)
Q Consensus 624 Dg~v~iw~~~ 633 (660)
|.++++|.-.
T Consensus 371 d~t~rfw~r~ 380 (464)
T KOG0284|consen 371 DRTVRFWTRN 380 (464)
T ss_pred CcceeeeccC
Confidence 9999999754
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=274.50 Aligned_cols=279 Identities=18% Similarity=0.191 Sum_probs=246.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
||..+|+.+-|+|+-..+++++.|++|++||..+++. ...+ .||...|..+.|+ |
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------e~~L--rGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------ERSL--RGHTDSVFDISFDASG 162 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------hhhh--hccccceeEEEEecCc
Confidence 3899999999999999999999999999998776654 2211 1899999999999 9
Q ss_pred CEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 387 SHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.++++++ |=.+++||..+ .++++.+.+|...|.++.|-|.| .|++++.|.+|+.|++.+|-++.++.+|...|..+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 9999999 77799999987 67788888999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---------------CcEEEE-Eec
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS-IHE 527 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~~-~~d 527 (660)
.+.||..+++++.|.++++|-+.++++ .. ...+|. ..|-+++|-|. +.++.+ +.|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 999999999999999999999998432 12 345666 57888888762 246666 599
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
++|++||+.++.++.++.+ |...|..++|+|.|+||+++.+|+++++||++++++...+.++ .+ .+++
T Consensus 314 ktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~h--fvt~ 381 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EH--FVTS 381 (406)
T ss_pred ceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cc--eeEE
Confidence 9999999999999999976 7999999999999999999999999999999999999998854 33 3559
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 608 IAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
++|+. +..+++||+-|.++++|..
T Consensus 382 lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCC-CCceEEeccccceeeeeec
Confidence 99998 6889999999999999974
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-34 Score=299.44 Aligned_cols=259 Identities=17% Similarity=0.243 Sum_probs=230.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee----------eeccceeEEEecCCCCceeeecccCCCCCCeE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE----------EENVNMESQLYQPSSKLVMTNDIAADPKDSIS 380 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 380 (660)
...+.|+.|++|+..||.|-.|..|++|.+...+.... ..+.+....+.|..++.....+. ||.++|+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~--GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY--GHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee--cCCCcee
Confidence 56899999999999999999999999999986542221 22233334556665555544444 8999999
Q ss_pred EEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126 381 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 456 (660)
Q Consensus 381 ~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~ 456 (660)
.+.|+ .++|++++ |++|++|.+.+..++-.+++|..+|+++.|+|-| +||+++.|++.++|.....++++.+.+|.
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 99999 88999999 9999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 535 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~ 535 (660)
+.|.|+.|+|++.++++||.|.++++||+.+|. .++ ++.||. ++|.+++|||+|++|+++ .|+.|.+||+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VR-iF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVR-IFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCc-----EEE-EecCCC---CceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999999999999999999964 344 778999 799999999999999994 9999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
.+++.+..+.+ |.+.|.++.||.||..||+|+.|+.|++||+..-
T Consensus 607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999876 6999999999999999999999999999998753
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-34 Score=276.45 Aligned_cols=275 Identities=15% Similarity=0.145 Sum_probs=240.8
Q ss_pred CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126 263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~ 342 (660)
.+....+|+.+|..||+|+.||.++||+..+ ..... | +.|.++|.++.|+.+|.||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~t--l--~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLIST--L--GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhh--h--hccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 3444469999999999999999999999974 44443 3 23999999999999999999999999999988765
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 420 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~ 420 (660)
+.. .+... -|..+-..|.|- ...+++++ |+.|+++.+....++.++.+|.+.|.+
T Consensus 308 g~~---------------------~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 308 GTV---------------------KQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred ceE---------------------EEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEE
Confidence 543 22111 366766788998 88888888 999999999999999999999999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEEcCCCee
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKK 490 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~---------~~l~s~s~dg~i~vwd~~~~~~ 490 (660)
+.|+|.| +|++++.|++++||.+....+.+.+.+|...|..+.|+|+| ..+++++.|++|++||+..+.
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv- 443 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV- 443 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-
Confidence 9999999 99999999999999999999999999999999999999965 478999999999999999954
Q ss_pred eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
++. .+..|. .+|++++|+|+|+++++| .||.|.+|+.++++.++.+.+ .+.|..++|+.+|+.|..+.
T Consensus 444 ----~i~-~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 444 ----PIH-TLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred ----eeE-eeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEe
Confidence 455 455677 699999999999999995 999999999999999999975 67799999999999999999
Q ss_pred cCCeEEEEECC
Q 006126 570 KSGHVKVFDTS 580 (660)
Q Consensus 570 ~dg~I~iwd~~ 580 (660)
.|+.+.+-|++
T Consensus 513 sd~~vcvldlr 523 (524)
T KOG0273|consen 513 SDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEec
Confidence 99999999875
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=281.95 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=236.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|+.|++|+..|.+.+|+... -.+..+ + ..|.++|.++.|+++|.++++|+.+|.|++|+..-+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEti-l--QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-- 172 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTS----FNFETI-L--QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-- 172 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCce----eeHHHH-h--hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh--
Confidence 59999999999999999999999752 111111 2 33999999999999999999999999999997543321
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
.. +...|...|++++|+ +..+++++ ||+|+|||....+..+.+.+|.-.|.+++|+
T Consensus 173 -------------------k~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 173 -------------------KI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred -------------------HH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 10 111466999999999 88899999 8999999999999888999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
|.. .|++|+.|..|++||.++|.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++ .+.+. ...+|
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~-~~r~H 305 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELF-TYRGH 305 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHH-Hhhcc
Confidence 999 999999999999999999999999999999999999999999999999999999999996 34444 56788
Q ss_pred CCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 504 VPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
. ..++++.|+|-..-|++ |.||.|..|.+...+++..+.. .|...|++++|+|-|..|++|+.|.++++|...
T Consensus 306 k---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 306 K---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred h---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 7 69999999997665555 5999999999986777777654 689999999999999999999999999999754
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.3e-34 Score=268.20 Aligned_cols=289 Identities=17% Similarity=0.208 Sum_probs=247.8
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.||.+.|.|+++.|-.+++++|+.|++++|||+.+++... ++. ||...|..++++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------------------tlt--Ghi~~vr~vavS~r 204 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---------------------TLT--GHIETVRGVAVSKR 204 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---------------------eec--chhheeeeeeeccc
Confidence 4599999999999999999999999999999988776522 111 799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
..|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|..+.
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 78999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~ 543 (660)
+.|-...+++||.|++|++||++.|+. .. ....|. ..|.+++.+|....++++....|+-|++..|..++.
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agkt-----~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGKT-----MI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCce-----eE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 999888999999999999999999653 22 344555 589999999999999987777899999999999888
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
+.+ |...|.+++...|| ++++|+++|.+.+||.++|-..+.... ....|.-.....+.+.+|.. .|..|+||..
T Consensus 356 lsg--h~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGSl~sEagI~as~fDk-tg~rlit~ea 429 (460)
T KOG0285|consen 356 LSG--HNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGSLESEAGIFASCFDK-TGSRLITGEA 429 (460)
T ss_pred ccc--ccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc--cccCCccccccceeEEeecc-cCceEEeccC
Confidence 654 68899999987765 788999999999999999866555432 12224322222344888988 7999999999
Q ss_pred CCeEEEEeCCC
Q 006126 624 NGRVHVIEPLE 634 (660)
Q Consensus 624 Dg~v~iw~~~~ 634 (660)
|.+|++|+-..
T Consensus 430 dKtIk~~keDe 440 (460)
T KOG0285|consen 430 DKTIKMYKEDE 440 (460)
T ss_pred CcceEEEeccc
Confidence 99999998654
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=297.19 Aligned_cols=288 Identities=25% Similarity=0.321 Sum_probs=244.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|...|.++.|+|+|+++++++.|+.+++|+...... ...... .+|...|.+++|+ +.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l--~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLREL--SGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccc--cccccceeeeEECCCCc
Confidence 588999999999999999999999999998744431 011111 2799999999999 78
Q ss_pred EEEEEe-CCcEEEEEC-CCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 388 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
++++++ |++|++||+ ..+..++++.+|...|++++|+|+| .+++|+.|++|++||+++++++..+.+|.+.|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 6668999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeee
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~ 543 (660)
++++++|++++.|+.|++||+.++... .+. ...++.... .++++.|+|++.+++++ .|+.+++||+..+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999997632 223 334444311 68999999999999995 788999999999999988
Q ss_pred ecCCCCC-CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 544 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 544 ~~~~~~~-~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
+.++... ..+.+...++.+.++++|+.|+.|++||+.++..+..+. ||.... +..++|+| ..+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~--~~~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAA--VSDLSSHP-TENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCc--eeccccCC-CcCeeeecC
Confidence 8774322 245556667899999999999999999999988888877 442222 44899999 789999998
Q ss_pred --CCCeEEEEeCC
Q 006126 623 --TNGRVHVIEPL 633 (660)
Q Consensus 623 --~Dg~v~iw~~~ 633 (660)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 79999999874
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-34 Score=294.48 Aligned_cols=240 Identities=17% Similarity=0.221 Sum_probs=209.2
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcC-----CCcce---------------------eeeecCCCCCCCCeEEE
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSEC---------------------RTLLLPDNSFGGRVVRL 317 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~-----~~~~~---------------------~~~~l~~~~h~~~V~~~ 317 (660)
....+.||+|++.||.|-.|..|++|.+...+ ....+ ...++ .||.++|..+
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L--~GH~GPVyg~ 457 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL--YGHSGPVYGC 457 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe--ecCCCceeee
Confidence 34446999999999999999999999987311 00000 01112 4699999999
Q ss_pred EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C
Q 006126 318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 394 (660)
Q Consensus 318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d 394 (660)
.|+|+.++|+++|.|+++++|.+.+.... ..|. ||..+|+++.|+ |-|+|+++ |
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~----------V~y~-------------GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCL----------VIYK-------------GHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeE----------EEec-------------CCCcceeeEEecCCceEEEecCCC
Confidence 99999999999999999999998776541 1122 899999999999 99999999 9
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 473 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 473 (660)
++.++|......+.+.+.+|.+.|.|+.|+|+. ++++||.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 537 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~ 537 (660)
|+.||.|.+||+.+++. +. ...+|. +.|.++.|+.+|..|++ |.|++|++||+..
T Consensus 595 g~ed~~I~iWDl~~~~~-----v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSL-----VK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCCcEEEEEcCCCcc-----hh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999643 33 456776 79999999999999999 6999999999864
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=281.63 Aligned_cols=344 Identities=15% Similarity=0.157 Sum_probs=275.5
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
...+||+++|++++....+++|++.. +++... +.. .|+.||..++|+|.|..+++|+.||.++|||+..+....
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~t----gk~irs-wKa-~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPT----GKLIRS-WKA-IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEccc----chHhHh-Hhh-ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 48899999999999999999999986 333221 211 299999999999999999999999999999987655432
Q ss_pred e--e----------------------------------------------------------------------------
Q 006126 348 E--E---------------------------------------------------------------------------- 349 (660)
Q Consensus 348 ~--~---------------------------------------------------------------------------- 349 (660)
. +
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 1 0
Q ss_pred ----------------------------------eccceeEEEecCCCCc------------------------------
Q 006126 350 ----------------------------------ENVNMESQLYQPSSKL------------------------------ 365 (660)
Q Consensus 350 ----------------------------------~~~~~~~~~~~~~~~~------------------------------ 365 (660)
.+.+...+.||.+++.
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 0000011344443332
Q ss_pred -------------eeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-
Q 006126 366 -------------VMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 427 (660)
Q Consensus 366 -------------~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~- 427 (660)
+.+.+. |..+.|.+++|- .++|+.++ .+.+++|+..+..+. .+.+|...|.+++...+|
T Consensus 302 eQnl~l~d~~~l~i~k~iv--G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIV--GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred cceEEEEEccccEEehhhc--CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCc
Confidence 222222 456778888888 47899999 799999999887776 788999999999977888
Q ss_pred eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeee----e
Q 006126 428 LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH----S 498 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~ 498 (660)
+|++|+.|+++++|.++.+ .++....+|.+.|.+++++..+ .+|+++|.|+++++|++...+.... ++. .
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~ 457 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRY 457 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhH
Confidence 9999999999999977443 3455668899999999997644 6899999999999999987322111 111 1
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
....|. ..|++++++|+.+.+++ |.|.+.+||+++......++.+ |...|.++.|+|..+.+++++.|++|+||
T Consensus 458 t~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 458 TERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred HHHhhc---ccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEE
Confidence 334576 68999999999999999 5999999999998888888876 79999999999999999999999999999
Q ss_pred ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.+.+..++.++. ||... +..+.|-. ++..|+||+.||-|++|++.+++|
T Consensus 533 ~is~fSClkT~e-------GH~~a---Vlra~F~~-~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 533 SISTFSCLKTFE-------GHTSA---VLRASFIR-NGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred Eeccceeeeeec-------Cccce---eEeeeeee-CCcEEEeccCCCcEEEEeccchhh
Confidence 999999999998 66333 55899988 899999999999999999999876
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=247.50 Aligned_cols=276 Identities=12% Similarity=0.101 Sum_probs=234.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.++|..+.|+-||+|.++++.|.++++|+. ..|.+++++. +|...|..++.+ +.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp---------------------~rg~liktYs--ghG~EVlD~~~s~Dns 72 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP---------------------LRGALIKTYS--GHGHEVLDAALSSDNS 72 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecc---------------------cccceeeeec--CCCceeeecccccccc
Confidence 8999999999999999999999999987764 4445555544 899999999988 77
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC--ceeeEeeccCCCeEEEE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLA 463 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~--~~~~~~~~~~~~v~~l~ 463 (660)
.+++|+ |..|.+||+.+|+..+.+.+|...|+.+.|+.+. .+++|+.|.++++||.++. ++++.+......|.++.
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 888888 9999999999999999999999999999999999 9999999999999998764 67888888888999998
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 542 (660)
.+ +..+++|+.||+++.||++.|.... -..+ .+|+++.|++|++..++ +.|+++++.|-.+|+.++
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 85 5789999999999999999975322 1222 57999999999999888 599999999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+.++.....-..++++.....+++|++||.|++||+.....+..+.. ...+.+.+++++|+ -.-|+++.
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---------~~~v~v~dl~~hp~-~~~f~~A~ 289 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---------VSTVIVTDLSCHPT-MDDFITAT 289 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---------CCceeEEeeecccC-ccceeEec
Confidence 998865555666788888889999999999999999999998888764 23455779999995 55566664
Q ss_pred CCCeEEEEeC
Q 006126 623 TNGRVHVIEP 632 (660)
Q Consensus 623 ~Dg~v~iw~~ 632 (660)
++.+..|.-
T Consensus 290 -~~~~~~~~~ 298 (307)
T KOG0316|consen 290 -GHGDLFWYQ 298 (307)
T ss_pred -CCceeceee
Confidence 445666654
No 34
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.6e-33 Score=254.80 Aligned_cols=301 Identities=14% Similarity=0.157 Sum_probs=240.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC-ceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
|+.++.+.+|||||.++|+|+.|..|+|.|++..-.... ...+..-+...+ .+++++. .|...|+++.|+ .
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre 184 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRE 184 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehh--hccCcccceeecchh
Confidence 999999999999999999999999999999873211000 000000111111 2344443 699999999999 7
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCe
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI 459 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v 459 (660)
..|++++ |++|++||.......+.++ ....+|.++.|+|.| .+++|....++++||+++.++...- .+|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 8899999 9999999997654444333 345689999999999 9999999999999999998876543 3589999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 538 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~ 538 (660)
+++.+++.|+..++++.||.|++||--+ .+++.++...|.. +.|.+..|..+|+|+++ |.|..+++|.+.++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-----~rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-----NRCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc-----HHHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 9999999999999999999999999877 4566667777876 89999999999999999 69999999999999
Q ss_pred ceeeeecCCCC---CCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 539 NHTSQLVPDKM---DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 539 ~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
+++..+.+.+. ...-+...|+....|++.-.+ .+.+.-||.+++..+..+.. || .+.+. .+..+| .
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~HSP-~ 407 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVHSP-V 407 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEeCC-C
Confidence 99999987532 233455778888888887654 37799999999887776654 77 44455 899999 7
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 006126 615 PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~ 633 (660)
+.-+++||+|-..|+|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 8899999999999999643
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=247.08 Aligned_cols=272 Identities=15% Similarity=0.215 Sum_probs=222.5
Q ss_pred EecCC-CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 269 TSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 269 ~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+|+|- |..||+++.|..|+||+... ...-.|+.. +. .+|+..|..++|+|.|++|+++|.|.++.||.-..+..
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~v-ld-~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef-- 95 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTV-LD-DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF-- 95 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCC-CCcEEEEEe-cc-ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce--
Confidence 88998 89999999999999999974 222334432 43 36999999999999999999999999999997544332
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC---CeEEEEEcCCCCCeEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATYF 421 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~---~~~~~~~~~~~~~v~~v 421 (660)
......+||...|.|++|+ |++||+++ |+.|-||.+.. .++...++.|...|..+
T Consensus 96 -------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 96 -------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred -------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence 1122334899999999999 99999999 99999999974 45778889999999999
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCC---CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 497 (660)
.|+|.. +|++++.|.+|++|.-. .-.+.+++.+|.+.|.+++|+|.|..|++++.|++++||-..+.
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------- 227 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------- 227 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---------
Confidence 999998 99999999999999866 33678999999999999999999999999999999999986641
Q ss_pred eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEccC-CCEEEEEe
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCD-GKCIYVSC 569 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~ 569 (660)
+..-|. ..++.+.|. + -.|++ +.|+.|++|.-... +.+... ...|...|+++.|.|. .+.|++|+
T Consensus 228 -~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 228 -LSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -cchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecC
Confidence 223344 578899999 4 45666 69999999976532 111111 2347889999999995 68999999
Q ss_pred cCCeEEEEECC
Q 006126 570 KSGHVKVFDTS 580 (660)
Q Consensus 570 ~dg~I~iwd~~ 580 (660)
.||.|++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999874
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.4e-32 Score=307.98 Aligned_cols=318 Identities=13% Similarity=0.150 Sum_probs=241.9
Q ss_pred CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC
Q 006126 283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 362 (660)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 362 (660)
+|.+++|+............-.+ ..|.+.|.+++|+|+|+++|+|+.|+.|+||+...... +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--------------~~~ 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--------------DGR 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--------------ccc
Confidence 56788888763111001110011 23899999999999999999999999999999754211 000
Q ss_pred C-CceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC
Q 006126 363 S-KLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD 435 (660)
Q Consensus 363 ~-~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d 435 (660)
. ....... .+...+.+++|+ +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.|
T Consensus 521 ~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 521 DIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred ccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC
Confidence 0 0001111 245678999997 67899999 99999999999999999999999999999997 66 99999999
Q ss_pred CeEEEEeCCCCceeeEeeccCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126 436 SSILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514 (660)
Q Consensus 436 ~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 514 (660)
+.|++||++++..+..+..+ ..|.++.|+ ++|.++++|+.||.|++||++++. .++. ...+|. ..|.++.
T Consensus 598 g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~ 668 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVR 668 (793)
T ss_pred CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEE
Confidence 99999999999988888754 679999995 579999999999999999998743 1233 345777 6899999
Q ss_pred EecCCcEEEE-EecCcEEEEeCCCC------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126 515 FHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 515 ~sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
|. ++.++++ +.|++|++||++.+ .++..+.+ |...+..++|+|++.+|++|+.|+.|++|+......+..
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence 97 6677777 69999999999743 45666654 688899999999999999999999999999887765544
Q ss_pred eecccc-cCCC--CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 588 INLTAY-AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 588 ~~~~~~-~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
+..... ...| .......+.+++|+| ++.+|++|+.||+|+||++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 332110 0000 001122355999999 8999999999999999986
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-31 Score=268.27 Aligned_cols=278 Identities=23% Similarity=0.323 Sum_probs=238.8
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.++|.+++|+|+++++++++.||.+.+|++.+... .... ..|...+..+.|+ +
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~--~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------LRTL--KGHTGPVRDVAASADG 63 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------EEEE--ecCCcceeEEEECCCC
Confidence 3899999999999999999999999999999875532 1111 1578888899999 6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
+++++++ +|.|++||+.+++....+..|...+.++.|+|++ .+++++.|+.|++||+.+++....+..|...+.++.|
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 6899998 9999999999988888898999999999999999 8888888999999999999989889889999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 543 (660)
+|++.++++++.|+.|++||+++++. +. ....|. ..+.++.|+|+++.+++ +.++.|++||+++++.+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKC-----VA-TLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEcccccc-----ce-eEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 99999999888899999999987443 22 233554 58999999999988887 4799999999998888877
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
+.. |...+.+++|+|++.++++++.||.|++||+.+++....+.. | ...+. +++|+| ++.++++++.
T Consensus 215 ~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~-~~~i~--~~~~~~-~~~~l~~~~~ 281 (289)
T cd00200 215 LRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-------H-TNSVT--SLAWSP-DGKRLASGSA 281 (289)
T ss_pred hhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc-------c-CCcEE--EEEECC-CCCEEEEecC
Confidence 754 577999999999999999998899999999999888877762 2 33344 999999 7899999999
Q ss_pred CCeEEEEe
Q 006126 624 NGRVHVIE 631 (660)
Q Consensus 624 Dg~v~iw~ 631 (660)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=276.02 Aligned_cols=358 Identities=15% Similarity=0.158 Sum_probs=279.9
Q ss_pred CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126 243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321 (660)
Q Consensus 243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp 321 (660)
...-.|+||.. |..+ .|...|..|++|+.|+.|.+||+- ++.-.+.|. ||.+.|+.+-|..
T Consensus 98 ~~~~tfngHK~AVt~l-----------~fd~~G~rlaSGskDt~IIvwDlV-----~E~Gl~rL~--GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTL-----------KFDKIGTRLASGSKDTDIIVWDLV-----GEEGLFRLR--GHKDSITQALFLN 159 (888)
T ss_pred ceeeeecccccceEEE-----------EEcccCceEeecCCCccEEEEEec-----cceeeEEee--cchHHHhHHhccC
Confidence 34445666665 4444 899999999999999999999996 344444464 4999999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeee-------------------eeccceeE--------------------------
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLE-------------------EENVNMES-------------------------- 356 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~-------------------~~~~~~~~-------------------------- 356 (660)
+.+++++.|.|+.|++||+++..+... ....+...
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 889999999999999999876543211 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 006126 357 -------------------------------------------------------------------------------- 356 (660)
Q Consensus 357 -------------------------------------------------------------------------------- 356 (660)
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence
Q ss_pred ---------------------------EEecCCC-Cc------eeeecccCCCCCCeEEEEEe-C-CEEEEEeCCcEEEE
Q 006126 357 ---------------------------QLYQPSS-KL------VMTNDIAADPKDSISCFALR-G-SHLFSASGGKISIF 400 (660)
Q Consensus 357 ---------------------------~~~~~~~-~~------~~~~~~~~~h~~~v~~v~~s-~-~~l~s~~dg~I~iw 400 (660)
..|.... +. ....+...||...|.+++++ + ..+++|+.+.+++|
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW 399 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW 399 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence 0111000 00 01112234899999999999 3 44555568999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
+..+.++++++... -+.+..|.|.+ ++++|...|.+.+||+.+...+.+.+.|.+.|++++.+||++.+++||.|.+
T Consensus 400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE
Confidence 99999999999754 67889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeee--c-eeee----eeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 480 LCVWDAVGWKKLC--S-KFLH----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 480 i~vwd~~~~~~~~--~-~~~~----~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
|++||..--.... . +.+. +...- . ..|.++.+||||++|+++ -|++++||-+.+.+..-.+.+ |.-
T Consensus 478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~---ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG--HkL 551 (888)
T KOG0306|consen 478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-E---DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG--HKL 551 (888)
T ss_pred EEEEeEEEEeccCcccceeeeeccceEEec-c---ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc--ccc
Confidence 9999975311100 0 0010 01111 1 579999999999999998 999999999999988777765 799
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
||.++.+|||++.++||+.|..|+||-++-|.+...+- +| ++.|. +|.|-| ....+.+||.|+.|+-||
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-------AH-dDSvm--~V~F~P-~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-------AH-DDSVM--SVQFLP-KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-------cc-cCcee--EEEEcc-cceeEEEecCcceEEeec
Confidence 99999999999999999999999999999999888876 34 44444 999999 788999999999999998
Q ss_pred CCCCce
Q 006126 632 PLESEV 637 (660)
Q Consensus 632 ~~~~~~ 637 (660)
-..-+.
T Consensus 621 g~kFe~ 626 (888)
T KOG0306|consen 621 GEKFEE 626 (888)
T ss_pred hhhhhh
Confidence 766543
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-33 Score=251.71 Aligned_cols=297 Identities=15% Similarity=0.151 Sum_probs=250.2
Q ss_pred cCCCCCCCCeEEEEEec---CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE
Q 006126 305 LPDNSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 381 (660)
Q Consensus 305 l~~~~h~~~V~~~~~sp---dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 381 (660)
+..+||+.+|..++||| +|-+|++++.||.-.+-+ -.+|.-+.++. ||.+.|++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~---------------------g~tgdwigtfe--ghkgavw~ 64 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN---------------------GDTGDWIGTFE--GHKGAVWS 64 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhcc---------------------CCCCCcEEeee--ccCcceee
Confidence 44478999999999995 888999999998765443 34444444333 89999999
Q ss_pred EEEe-C-CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccC
Q 006126 382 FALR-G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQ 456 (660)
Q Consensus 382 v~~s-~-~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~ 456 (660)
.+.+ + ..-++++ |=+.++||.-+|..+..| .|..-|.+++|+.|. .|++|+.+..++|||++.. .+...+.+|.
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence 9998 3 3456666 889999999999988887 477789999999999 9999999999999999865 3457788999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 536 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~ 536 (660)
+.|..+.|....+.+++.+.|++||+||.+++.......+. ..|+++.++++|++|.++..+.|.+||..
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------CCCcceeeccCCCEEEEecCceeEEeccc
Confidence 99999999998889999999999999999997655443333 57999999999999999999999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
+...++.+.. ...|.+.+++|+...+++|++|..++.||..+|+.+..+. .|| -++|. ||.|+| ||.
T Consensus 214 sf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh-~gpVh--cVrFSP-dGE 280 (334)
T KOG0278|consen 214 SFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGH-FGPVH--CVRFSP-DGE 280 (334)
T ss_pred cccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCC-CCceE--EEEECC-CCc
Confidence 9999888865 6789999999999999999999999999999999887752 266 34555 999999 899
Q ss_pred EEEEEeCCCeEEEEeCCCCce--eccCCCCcccc
Q 006126 617 RIALGLTNGRVHVIEPLESEV--EWGKLPFTDSR 648 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~~~--~w~~~~~~~~~ 648 (660)
..|+||.||+|+||....++. .|....|.+.+
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred eeeccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 999999999999999887764 67777776554
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=249.80 Aligned_cols=277 Identities=15% Similarity=0.149 Sum_probs=229.5
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|.++|+|+.|..|.+|+..+..+ ...++. ||.+.|..+.|.+|++.++++|.|.+++.||.++++...
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----N~~~lk--gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCE----NFWVLK--GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecccccc----ceeeec--cccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 39999999999999999999999864211 112233 599999999999999999999999999999988776521
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
. ..+|..-|+.+.-+ |. .+.+++ |+++++||+++...++++. ....++++.|
T Consensus 127 k-----------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f 182 (338)
T KOG0265|consen 127 K-----------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF 182 (338)
T ss_pred h-----------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEe
Confidence 1 11688889988877 55 455666 8999999999888887764 3467899999
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
..++ .+.+|+-|+.|++||++.+.....+.||...|+.+..+|+|.++.+-+.|.++++||++..... ..++. ++.+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~-if~g 260 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVK-IFQG 260 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEE-Eeec
Confidence 9999 9999999999999999999999999999999999999999999999999999999999874322 23344 5555
Q ss_pred cCC-CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 503 LVP-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 503 ~~~-~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
|.- .......++|+|+++.+.+ +.|..+++||......+..+.+ |.+.|.++.|+|...+|.+++.|.+|++=+
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG--h~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG--HYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC--cceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 431 0023456899999999998 5999999999988888888765 799999999999999999999999998743
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=282.68 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=233.9
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|||+++++++.|+.+++|+...... ... ..+ .+|...|.+++|+|+|+++++++.|++++|||+....
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~-~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--- 236 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS--NLL-REL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--- 236 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc--hhh-ccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---
Confidence 59999999999999999999999964321 111 123 3599999999999999999999999999999983332
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
..++.+. +|...|++++|+ ++.+++|+ |++|++||+.++++.+.+.+|...|++++|+
T Consensus 237 -----------------~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 237 -----------------RNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred -----------------eEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 2333222 899999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCc--eeeEeeccCCC--eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
+++ .|++++.|+.|++||+.++. ++..+.++... ++++.|+|++.++++++.|+.+++||+..+... . .
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----~-~ 371 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----G-T 371 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----e-e
Confidence 999 99999999999999999998 56777776655 999999999999999999999999999985432 2 2
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEccCCCEEEEEe--cCCeEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSC--KSGHVK 575 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~sg~--~dg~I~ 575 (660)
..+|......+.+..+++.++++++ +.|+.|++||+.++..+..+.+ | ...+..++++|..+++++++ .|+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~--h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG--HSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC--CCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 3444420014455666889999999 4999999999999888888865 5 78899999999999999998 689999
Q ss_pred EEECC
Q 006126 576 VFDTS 580 (660)
Q Consensus 576 iwd~~ 580 (660)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99764
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-32 Score=239.25 Aligned_cols=242 Identities=16% Similarity=0.233 Sum_probs=215.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
+++++|..+.|+ |+|.++++ |.+|++|++..|.+++++.+|...|..++.+.|+ .|++|+.|+.|.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99999888 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecC
Q 006126 450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 528 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~ 528 (660)
+.|.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..+++ ++.... ..|.++... +..|++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQ-ildea~---D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQ-ILDEAK---DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccc-hhhhhc---CceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999999999999999999999854 35666 444433 478888876 455666 6999
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
+++.||++.|.....+. ..+|++++|++|++..++++-|+.+++.|-.+|+++..+. || .+.-+-+.+
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-------Gh-kn~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-------GH-KNMEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------cc-ccceeeeee
Confidence 99999999998766653 6789999999999999999999999999999999999887 66 444555677
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 609 AAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+++. ....+++|++||.|++||+..+..
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEecccee
Confidence 8887 568999999999999999988765
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-30 Score=259.03 Aligned_cols=270 Identities=24% Similarity=0.288 Sum_probs=231.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+++++++++.||.+++|+..+. ..... +. +|...+..+.|+|+++++++++.||.+.+|++...+.
T Consensus 15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~-- 85 (289)
T cd00200 15 VAFSPDGKLLATGSGDGTIKVWDLETG---ELLRT--LK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC-- 85 (289)
T ss_pred EEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEE--Ee--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc--
Confidence 389999999999999999999999852 22222 22 2788999999999999999999999999999876432
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
..... .|...+.++.|+ +.++++++ +|.|.+||+.+++....+..|...+.++.|+
T Consensus 86 -------------------~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 86 -------------------VRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred -------------------eEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 11111 577889999999 57888888 9999999999999999998899999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
|++ .+++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||+++++. +. ....|
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~ 218 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----LG-TLRGH 218 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----ec-chhhc
Confidence 999 888888899999999999999999999999999999999999999999999999999988443 22 22244
Q ss_pred CCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 504 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
. ..+.++.|+|++.+++++ .++.|++||+.+++....+.. |...+.+++|+|+++++++++.||.|++|+
T Consensus 219 ~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 E---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred C---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc--cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4 589999999998888886 499999999998888888763 678999999999999999999999999996
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=250.76 Aligned_cols=286 Identities=15% Similarity=0.179 Sum_probs=243.8
Q ss_pred cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126 245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 323 (660)
Q Consensus 245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg 323 (660)
.++.+||.. |.+. ++-|-.+++++|+.|++++|||+. +++++. +|++ |...|..+++|+-.
T Consensus 144 ~rVi~gHlgWVr~v-----------avdP~n~wf~tgs~DrtikIwDla----tg~Lkl-tltG--hi~~vr~vavS~rH 205 (460)
T KOG0285|consen 144 YRVISGHLGWVRSV-----------AVDPGNEWFATGSADRTIKIWDLA----TGQLKL-TLTG--HIETVRGVAVSKRH 205 (460)
T ss_pred hhhhhhccceEEEE-----------eeCCCceeEEecCCCceeEEEEcc----cCeEEE-eecc--hhheeeeeeecccC
Confidence 345667777 5554 888999999999999999999998 455553 4654 99999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 400 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw 400 (660)
.|+++++.|+.|+.||++.++. ++.+. ||-..|+|++.+ -+.|++|+ |.++++|
T Consensus 206 pYlFs~gedk~VKCwDLe~nkv---------------------IR~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKV---------------------IRHYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred ceEEEecCCCeeEEEechhhhh---------------------HHHhc--cccceeEEEeccccceeEEecCCcceEEEe
Confidence 9999999999999998876653 33333 899999999999 78899999 9999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
|+++...+..+.+|..+|..+.+.|.+ .+++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.| .
T Consensus 263 DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 263 DIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred eecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence 999999999999999999999999988 99999999999999999999999999999999999999999999988876 6
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC---C---CCCCCe
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---D---KMDLPI 553 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~---~---~~~~~v 553 (660)
|+-|++-.|.. ++ ...+|. +.|++++...||-++..+.+|.+.+||.++|-..+.... . .....|
T Consensus 342 ik~w~~p~g~f-----~~-nlsgh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI 412 (460)
T KOG0285|consen 342 IKQWKLPEGEF-----LQ-NLSGHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI 412 (460)
T ss_pred ceeccCCccch-----hh-cccccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccce
Confidence 88999988543 33 356777 789999999988666667889999999998876554421 1 125678
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 554 TYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
++.+|+..|..|++|..|.+|++|.-..
T Consensus 413 ~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 413 FASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEeecccCceEEeccCCcceEEEeccc
Confidence 9999999999999999999999997653
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=266.92 Aligned_cols=275 Identities=17% Similarity=0.248 Sum_probs=239.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|+..|.++.|+|...+++++-.+|.+.||+.++..... -++ -..-+|++..|- .+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk----------sfe-------------V~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK----------SFE-------------VSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeee----------eee-------------ecccchhhheeeeccc
Confidence 78999999999999999999999999999987775411 111 245678888888 78
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~ 464 (660)
++++|+ |..|++|+..+++.+..|..|..-|+|++.+|.. +++++++|-+|++||-+.+ .+.++|+||...|.+++|
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 999999 8999999999999999999999999999999999 9999999999999998764 678999999999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEEE-ecCcEEEEeCCCCce
Q 006126 465 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNH 540 (660)
Q Consensus 465 sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~-~d~~i~iwd~~~~~~ 540 (660)
+| |.+.+++++-|++|++|.+.+. .+.. .+.+|. ..|+++.+-+.| .+|++| .|.+|+|||..+..|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~-----~~nf-Tl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSP-----HPNF-TLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCC-----CCce-eeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99 6788999999999999999883 3334 456888 699999998754 688885 889999999999999
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
++++.+ |...|..++|+|.-..+++|++||+|+||+..+.++...+... -..++ |++-.+ .+..++.
T Consensus 220 V~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------leRvW--~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 220 VQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------LERVW--CIAAHK-GDGKIAV 286 (794)
T ss_pred HHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--------CceEE--EEeecC-CCCeEEE
Confidence 999976 7899999999999999999999999999999999888877652 45577 898888 5667888
Q ss_pred EeCCCeEEE
Q 006126 621 GLTNGRVHV 629 (660)
Q Consensus 621 ~s~Dg~v~i 629 (660)
|.+.|.|.|
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 877776654
No 46
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-31 Score=253.45 Aligned_cols=422 Identities=12% Similarity=0.132 Sum_probs=284.6
Q ss_pred HHHHHHHHhhchhhHHHHHHHHhhh----------ccccccHHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHH
Q 006126 67 ELIYLIHQFLNEEEFKETLHKLEQE----------TRVFFDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQI 136 (660)
Q Consensus 67 e~~~lI~q~L~e~G~~~sa~~L~~E----------s~~~~~~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i 136 (660)
+-+++..|-+.+..+....++|-.- +.+.++-..|.+....|...+|+..|+.. ..++.+
T Consensus 51 at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~----------~~~lr~ 120 (519)
T KOG0293|consen 51 ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNP----------VLYLRK 120 (519)
T ss_pred chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcc----------hhhhhh
Confidence 5566666766667777776666432 22222356677777888888887776542 334456
Q ss_pred HHHHHHHHhhhc----------cCCCCch-hhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHh-----------
Q 006126 137 QRQKYLEAVDRQ----------QKLPSDF-AERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIK----------- 194 (660)
Q Consensus 137 ~~q~~lell~~~----------e~~p~~~-~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~----------- 194 (660)
.+.+|.|+...- +.+-..+ .+|.+++.++.+......++-++ -...-|++-++
T Consensus 121 ~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP~r-----RLehLl~qAv~~Q~d~cvyhns 195 (519)
T KOG0293|consen 121 NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLPKR-----RLEHLLEQAVKYQRDSCVYHNS 195 (519)
T ss_pred hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCChH-----HHHHHHHHHHHHHHhHhHHhcc
Confidence 667777765432 1221222 26777777766553222211100 00011111111
Q ss_pred -hhcceeeeeeeecCCCCCcccccccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecC
Q 006126 195 -QIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLP 272 (660)
Q Consensus 195 -qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~sp 272 (660)
.++.+..+.|.+.. . .+....+++..|.. |.-+ .||+
T Consensus 196 ldsvsll~Dh~c~~~-q-----------------------------ip~qt~qil~~htdEVWfl-----------~FS~ 234 (519)
T KOG0293|consen 196 LDSVSLLSDHFCGRL-Q-----------------------------IPSQTWQILQDHTDEVWFL-----------QFSH 234 (519)
T ss_pred cchhhhhhhcccCcc-c-----------------------------CCchhhhhHhhCCCcEEEE-----------EEcC
Confidence 01222222121100 0 01223455555555 4444 9999
Q ss_pred CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126 273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 352 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~ 352 (660)
+|++||+|+.|.+..||++.....- -...++. ||..+|..+.||||.+||++++.|..+.+||+.++..
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~~--kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~------- 303 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVHF--KLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL------- 303 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcce--eeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchh-------
Confidence 9999999999999999998753221 1122354 4999999999999999999999999998888776654
Q ss_pred ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-
Q 006126 353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFILLPQD- 427 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~- 427 (660)
...+- .+|...+.+++|. |..+++|+ |+++..||++. ......++. ...|.+++..+||
T Consensus 304 --------------~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 304 --------------RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred --------------hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCc
Confidence 22111 1466889999999 88899999 99999999874 334444432 3568999999999
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
.+++.+.|..|++++.++........ ...+|+++..+.||+++++.-.+..+++||+.... .+. ...||...
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-----lv~-kY~Ghkq~- 439 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-----LVR-KYFGHKQG- 439 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----HHH-Hhhccccc-
Confidence 88888899999999988765554333 55789999999999999999999999999999632 222 34455421
Q ss_pred CCeEEEEEec-CCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 006126 508 TIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 508 ~~v~~~~~sp-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~ 581 (660)
..+-.-+|-. +..++++| .|+.|+||+..+++++.++.+ |...|++++|+|.. .++|++++||+|+||....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 2233344543 45777884 999999999999999999976 79999999999854 6899999999999998764
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-32 Score=255.83 Aligned_cols=280 Identities=15% Similarity=0.182 Sum_probs=225.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 389 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l 389 (660)
....|.|+.+. ...+++|..|++|+|||..+.. +...+. ||.+.|.|+.|....+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~---------------------c~~~L~--GHtGSVLCLqyd~rvi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE---------------------CLKILT--GHTGSVLCLQYDERVI 250 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH---------------------HHHhhh--cCCCcEEeeeccceEE
Confidence 46789999985 4468999999999998865443 232222 8999999999998899
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEe
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s 465 (660)
++|+ |.+|++||+++|+++.++-+|...|..+.|+.. ++++++.|.+|.+||+.+.. +.+.+.||...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence 9999 999999999999999999999999999999754 99999999999999998653 346778999999999995
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
.+++++++.|.+|++|++.+++ .+. +..+|. ..|.|+.+. |+++++ +.|.+|++||+..|.+++.+
T Consensus 330 --~kyIVsASgDRTikvW~~st~e-----fvR-tl~gHk---RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTSTCE-----FVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred --cceEEEecCCceEEEEecccee-----eeh-hhhccc---ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence 5799999999999999999954 344 566887 577777664 788888 49999999999999999999
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc--cCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+ |..-|.++.|. .+.+++|+.||+|+|||+.++..-........ ....| .+.|. .+.| |...+++++
T Consensus 397 eG--HEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVF--rLQF---D~fqIvsss 466 (499)
T KOG0281|consen 397 EG--HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVF--RLQF---DEFQIISSS 466 (499)
T ss_pred hc--hHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeE--EEee---cceEEEecc
Confidence 76 68899999994 78899999999999999987653311110000 00122 33444 7887 457899999
Q ss_pred CCCeEEEEeCCCCcee
Q 006126 623 TNGRVHVIEPLESEVE 638 (660)
Q Consensus 623 ~Dg~v~iw~~~~~~~~ 638 (660)
.|.+|.|||..++.+-
T Consensus 467 HddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPPS 482 (499)
T ss_pred CCCeEEEEEcCCCCcc
Confidence 9999999999887553
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.3e-29 Score=256.12 Aligned_cols=347 Identities=15% Similarity=0.160 Sum_probs=273.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.-+||.-.||.|-.||.|+||+... . ...+++ .||...|+++.|...|..|++||.|+.|.+||+-.......
T Consensus 72 ~~~~d~l~lAVGYaDGsVqif~~~s----~-~~~~tf--ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 72 RSSDDILLLAVGYADGSVQIFSLES----E-EILITF--NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred eccCCcceEEEEecCceEEeeccCC----C-ceeeee--cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 3458888999999999999999974 2 233335 45999999999999999999999999999999865443221
Q ss_pred ---------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCC--
Q 006126 349 ---------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-- 404 (660)
Q Consensus 349 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~-- 404 (660)
..+.+..+++||..+..+..+.. .|.+.++.+++.++.+++++ |+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv--d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV--DHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe--cccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 23445567999999999888766 79999999999977766666 99999999810
Q ss_pred --------------C--------eEEE-----------------------------------------------------
Q 006126 405 --------------F--------QTLA----------------------------------------------------- 409 (660)
Q Consensus 405 --------------~--------~~~~----------------------------------------------------- 409 (660)
| +.+.
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 0 0000
Q ss_pred -----------------------------------------------------------------EEcCCCCCeEEEEEc
Q 006126 410 -----------------------------------------------------------------TFANPPPIATYFILL 424 (660)
Q Consensus 410 -----------------------------------------------------------------~~~~~~~~v~~v~~s 424 (660)
++.+|...|.+++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 001255677888888
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
.+. .+++|+ .++|++|+..+.++++++.. +.+.+..|-|.++++++|...|.+.+||+.+.. .+. ....|
T Consensus 383 ~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-----l~E-ti~AH 453 (888)
T KOG0306|consen 383 SDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS-----LVE-TIRAH 453 (888)
T ss_pred cCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh-----hhh-hhhcc
Confidence 888 555554 67899999999999999964 488899999999999999999999999999843 334 34477
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC-----CceeeeecCC-----CCCCCeEEEEEccCCCEEEEEecCC
Q 006126 504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT-----LNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~-----~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
. +.|.+++.+||++.+++ |.|.+|++||..- +...+.+... .-...|.++.+||||++|+++--|+
T Consensus 454 d---gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 454 D---GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred c---cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 7 79999999999999999 6999999999641 1111111110 1267899999999999999999999
Q ss_pred eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCccc
Q 006126 573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDS 647 (660)
Q Consensus 573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~ 647 (660)
+|+||-+++-+..-.+. || .-+ ++|+..+| |++.++|||.|.+|+||-+.-|+|.-+..+..++
T Consensus 531 TVkVyflDtlKFflsLY-------GH-kLP--V~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS 594 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLY-------GH-KLP--VLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS 594 (888)
T ss_pred eEEEEEecceeeeeeec-------cc-ccc--eeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence 99999999987666665 55 444 45999999 8999999999999999999999997666665544
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.8e-30 Score=265.94 Aligned_cols=325 Identities=15% Similarity=0.180 Sum_probs=255.4
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++|+|...+++++-..|.|++||... +.+..- +.. |.++|..++|+|++.++++||.|-.|+||+.+..++
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM----~tli~r-Fde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-- 85 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM----GTLIDR-FDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-- 85 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh----hhHHhh-hhc--cCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence 38999999999999999999999985 333332 444 999999999999999999999999999999876654
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
+.++. ||-+.|..+.|+ -.+|++++ |.+|+||+..+++++..+.+|..-|.|..|+
T Consensus 86 -------------------lftL~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 86 -------------------LFTLL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred -------------------hhhhc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 22222 899999999999 67999999 8999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCc-----------------------------eeeEeeccCCCeEEEEEeCCCCEEEEE
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKK-----------------------------TKAKLKGHQNRITCLAYSLSLNVLVSS 474 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~ 474 (660)
|.. .++++|-|.+|+|||+..-+ ..+.++||...|+-++|+|.-..+++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 988 99999999999999975210 124678999999999999999999999
Q ss_pred eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe
Q 006126 475 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 553 (660)
Q Consensus 475 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 553 (660)
+.|+.|++|.+...+ ...+. ...||. +.|.++-|+|....+++ |.|++|+|||+...+.++++.- .....
T Consensus 225 ~DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--endRF 295 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--ENDRF 295 (1202)
T ss_pred CCcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeec--cCCeE
Confidence 999999999987632 23344 566888 69999999999999999 7999999999999999999865 37788
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCCee----------------EEEeeccc--------ccCCCCcCcccceEEEE
Q 006126 554 TYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----------------RCQINLTA--------YAQPGTISLELYPLVIA 609 (660)
Q Consensus 554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~----------------~~~~~~~~--------~~~~gh~~~~v~~~~v~ 609 (660)
+.++-+|..+++++|-+.| +.+|.++..++ +..+.... ....|.--.+.+ +++
T Consensus 296 W~laahP~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~--sms 372 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPR--SLS 372 (1202)
T ss_pred EEEEecCCcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcc--eee
Confidence 9999999999888875444 44555542211 11111100 001121123444 899
Q ss_pred EecCCCCEEEEEeCC-CeEEEEeCCC
Q 006126 610 AHPLEPNRIALGLTN-GRVHVIEPLE 634 (660)
Q Consensus 610 ~sp~d~~~l~s~s~D-g~v~iw~~~~ 634 (660)
++|..+-.+++...| |.--++.+.+
T Consensus 373 YNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 373 YNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred eccccCeEEEEeccCCCeEEEEEecC
Confidence 999766666665544 4555666544
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=270.40 Aligned_cols=284 Identities=17% Similarity=0.243 Sum_probs=241.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
.+..|..++|+|...+++++-..|.|.+||..-+.. +..+. .|.++|..++|+ +.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------i~rFd--eHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------IDRFD--EHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------Hhhhh--ccCCccceeeecCCCC
Confidence 477899999999999999999999999999765543 11111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
++++|+ |-.|++|+..+.+++.++.+|..-|+.+.|++.- +|+++|+|.+|+||+..+++++..+.||...|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 7899999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeee-----------------------ceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
|....++++|-|.+||+||+..-+... ...++.+.+||+ ..|+-++|+|.-..+
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 999999999999999999996522111 112334677898 689999999999999
Q ss_pred EEE-ecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 523 LSI-HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 523 ~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++| .|..|++|.+...+. +.+. .+|.+.|.++-|+|..+++++.++|+.|+|||+...+.++.+.. .
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtc--rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------e 291 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTC--RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------E 291 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhh--hcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--------c
Confidence 995 889999999875543 3344 35899999999999999999999999999999999888888753 2
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.+..| .++-|| ..+++|.| .|+-+.||.+.
T Consensus 292 ndRFW--~laahP-~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 292 NDRFW--ILAAHP-ELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred CCeEE--EEEecC-Ccceeeee-cCCceEEEEEc
Confidence 55667 788888 67776665 56667777776
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=2e-29 Score=288.40 Aligned_cols=281 Identities=14% Similarity=0.159 Sum_probs=223.0
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcce---eeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccC
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~ 342 (660)
.+.|+|+|+++|+|+.|+.|+||+.......... ....+. +...|.+++|+| ++.+|++++.||+|++||+.+
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 3699999999999999999999997531111110 011121 456899999987 478999999999999999876
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 418 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v 418 (660)
++. +... .+|...|++++|+ +.+|++|+ ||+|++||+.++..+..+..+ ..+
T Consensus 565 ~~~---------------------~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 565 SQL---------------------VTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred CeE---------------------EEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 543 1111 1699999999997 67899999 999999999999998888754 578
Q ss_pred EEEEEcC-CC-eEEEEeCCCeEEEEeCCCCc-eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eece
Q 006126 419 TYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSK 494 (660)
Q Consensus 419 ~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~ 494 (660)
.++.|++ ++ .|++|+.|+.|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||++.+.. ....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET 699 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence 8999965 57 99999999999999998765 567788999999999997 678999999999999999985321 1112
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec-----------CCCCCCCeEEEEEccCC
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCDG 562 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~dg 562 (660)
++. ...+|. ..+..++|+|++.+|++ +.|+.|++|+.....++..+. ...+...|.+++|+|++
T Consensus 700 ~l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 700 PLH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred ceE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 344 456777 68899999999999999 589999999987655443221 12235679999999999
Q ss_pred CEEEEEecCCeEEEEEC
Q 006126 563 KCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 563 ~~l~sg~~dg~I~iwd~ 579 (660)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999996
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=8.1e-30 Score=240.68 Aligned_cols=287 Identities=13% Similarity=0.140 Sum_probs=239.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|++.|.+++.+|+.++++||+.|....+|+..++.. ...+ .+|+..|+++.|+ |.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---------------------~~el--tgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---------------------AGEL--TGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---------------------eeEe--cCCCCceEEEEEccCce
Confidence 999999999999999999999999999998877653 1111 1899999999999 89
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
+||+|+ +|.|+||+..++.....+...-..+.-+.|+|.+ .|+.|+.||.+.+|.+.++...+.+.||+.++++=.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 999999 9999999999999999887777788889999999 99999999999999999988889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 544 (660)
|+|+.++++..||+|++||..++..... +..... ....++.++..+..++.| .++.+++.+..+|+.+...
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~-----~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHK-----ITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEE-----eccccc---CcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 9999999999999999999999754322 221111 467788999999888885 8889999998888877666
Q ss_pred cCC------CC---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 545 VPD------KM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 545 ~~~------~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
.+. .+ ...|.++.|+..=.+.|+|+-||+|.|||+.+.++..... | . ..++.+.|-+ .
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--------h-e--~~V~~l~w~~--t 338 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--------H-E--DGVTKLKWLN--T 338 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--------C-C--CceEEEEEcC--c
Confidence 520 12 2345555666666889999999999999999988777654 2 2 2256999988 3
Q ss_pred CEEEEEeCCCeEEEEeCCCCceecc
Q 006126 616 NRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
.+|++++.||+|+.||.++|+.+..
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred chheeeccCceEEeeeccccceEEE
Confidence 7899999999999999999987653
No 53
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-29 Score=253.74 Aligned_cols=267 Identities=16% Similarity=0.224 Sum_probs=232.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++|+|...+++++-.+|.|.|||.++ ...++.+.. ..-+|.++.|-+-.+++++|+.|..|+||+..+.+..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyet---qtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV- 90 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYET---QTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV- 90 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEeccc---ceeeeeeee----cccchhhheeeeccceEEEecCCceEEEEecccceee-
Confidence 49999999999999999999999986 344444433 4679999999999999999999999999988776641
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~ 423 (660)
..+. .|.+.|++++.+ ..++++++ |-+|++||.+. ..+.++|.+|..-|.+++|
T Consensus 91 ---------~~Fe-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 91 ---------KTFE-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred ---------EEee-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 2222 699999999999 77999999 78999999975 5788999999999999999
Q ss_pred cCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 424 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 424 sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
+|.+ .+++++-|++|+||.+.+..+..++++|...|+|+.+-+. ..+|++|+.|.+++|||..+ ..+++ +
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~-T 222 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQ-T 222 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHH-H
Confidence 9988 9999999999999999999999999999999999999874 46999999999999999999 45666 6
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
.+||. ..|..+.|+|.-..+++ +.||+++||+..+.+...++.-+ ...+++++-.+.+..++.|.++|.|.
T Consensus 223 LeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 223 LEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred hhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEE
Confidence 78998 68999999999999999 59999999999988877777542 67899999888888888888777653
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.6e-31 Score=249.76 Aligned_cols=266 Identities=17% Similarity=0.232 Sum_probs=220.5
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeec
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 351 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~ 351 (660)
-|...+++|..|++|+|||... -.|... | .||++.|.|+.|. .+.+++|+.|.+|+|||+++++
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~----~~c~~~-L--~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge------- 268 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNS----LECLKI-L--TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE------- 268 (499)
T ss_pred ecchhhhcccccCceEEecccc----HHHHHh-h--hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-------
Confidence 4667899999999999999873 444433 5 4599999999995 4589999999999988876554
Q ss_pred cceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCC
Q 006126 352 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD 427 (660)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~---~~~~~~~~~~~v~~v~~sp~~ 427 (660)
++.+++ +|...|..+.|+++++++++ |.+|.+||+.... +.+.+.+|...|+.+.|+..
T Consensus 269 --------------~l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 269 --------------PLNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred --------------hhhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 455455 79999999999999999999 9999999998654 33456699999999998644
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
++++++.|.+|++|++.+++.++++.+|...|-|+.+ .|+++++|+.|.+|++||+..|. ++. +.+||.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~-----cLR-vLeGHE--- 400 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA-----CLR-VLEGHE--- 400 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH-----HHH-HHhchH---
Confidence 9999999999999999999999999999999999887 68999999999999999999954 455 678998
Q ss_pred CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee-------ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 508 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ-------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
.-|.++.|. .+.+++ +.||+|++||+.++...+. .....|.+.|..+.| |...+++++.|.+|-|||.
T Consensus 401 eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 401 ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 689999996 567888 5999999999987543211 111246889999998 4678999999999999999
Q ss_pred CCCeeE
Q 006126 580 STLELR 585 (660)
Q Consensus 580 ~~~~~~ 585 (660)
.++..-
T Consensus 477 l~~~~~ 482 (499)
T KOG0281|consen 477 LNGPPS 482 (499)
T ss_pred CCCCcc
Confidence 877543
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-30 Score=269.01 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=208.8
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee------------------------------------eecc
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE------------------------------------EENV 352 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~------------------------------------~~~~ 352 (660)
.|.+.||++.||+||+|||+||.||.|+||.+...+.... ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999876221000 0000
Q ss_pred ceeEEEecCCCC----ceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 006126 353 NMESQLYQPSSK----LVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 426 (660)
Q Consensus 353 ~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~ 426 (660)
... .+...... ..+..+ .||.+.|..+.|+ +++|++++ |.+|++|++...+|++.| .|..-|+|++|+|.
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPV 420 (712)
T ss_pred Ccc-ccCCCccccccccchhhh--hccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEeccc
Confidence 000 11111111 111112 2899999999999 99999999 999999999999999998 58899999999997
Q ss_pred C--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126 427 D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504 (660)
Q Consensus 427 ~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 504 (660)
+ +|++|+-|+.|+||++...+.+.-. .-..-|++++|.|||+..++|+.+|.+++|++..-+......+. ...+..
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk 498 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKK 498 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCcc
Confidence 6 9999999999999999876655433 34578999999999999999999999999999986655444443 111111
Q ss_pred CCCCCeEEEEEecCCc--EEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 505 PETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 505 ~~~~~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.....|+.+.|.|... .|+++.|..|+|||.++..++..+++......-....|+.||++|+++++|..|+||+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 0013699999998544 6777999999999999999999998755556667899999999999999999999999743
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=226.42 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=234.6
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|...|.+++|+.+|..|++|+.|+++.+|+++....... ....+|.+.|-.++|.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------LVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------------hcccCCCcchhhheeCCCC
Confidence 3899999999999999999999999999999876643111 1112799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.+.+++++ |.+|++||+.++++..........+ .+.|+|+| ++++++.|..|...|.++.+.+...+ ....++.+.
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence 77888888 9999999999999998887665555 58899999 99999999999999999887776655 455678888
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 542 (660)
|+.++.+++.....|+|.|..... -++++ ....|. ....|+.|+|+|+++++ +.|-.+.+||+...-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~-si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPS-----LKPVQ-SIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccc-----ccccc-ccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 998888888878889999998876 34555 455666 67889999999999999 599999999999888888
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+.. +.-+|..++||.||++||+|++|..|-|=++++|..+..++. .++.+ .|+||| ...+||-++
T Consensus 226 ~isR--ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~ 291 (313)
T KOG1407|consen 226 CISR--LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYAC 291 (313)
T ss_pred eecc--ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEe
Confidence 8864 589999999999999999999999999999999999998863 55566 899999 678888877
Q ss_pred CC---------CeEEEEeCC
Q 006126 623 TN---------GRVHVIEPL 633 (660)
Q Consensus 623 ~D---------g~v~iw~~~ 633 (660)
+| |+|+||-+.
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 65 567776553
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=9.1e-31 Score=255.57 Aligned_cols=290 Identities=12% Similarity=0.155 Sum_probs=238.2
Q ss_pred CCccccccCCCC-CCceeecCCCCceeeEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126 242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 319 (660)
Q Consensus 242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~ 319 (660)
.+-...|.||.+ |.++ .|.| .+.+|++++-|+.|+||++.. .+.|.+. + .||..+|..++|
T Consensus 204 kk~~~~~~gH~kgvsai-----------~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrt-f--~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAI-----------QWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRT-F--KGHRKPVRDASF 266 (503)
T ss_pred HhheeeccCCccccchh-----------hhccceeeEEEecCCCceEEEEEEec---Ccceehh-h--hcchhhhhhhhc
Confidence 345567889988 5555 7788 889999999999999999985 3455443 4 349999999999
Q ss_pred ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-CEEEEEe-CC
Q 006126 320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GG 395 (660)
Q Consensus 320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~-~~l~s~~-dg 395 (660)
+++|..++++|.|+.+++||.++++. +... .-...++|+.|. + +.+++|+ |+
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~---------------------~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQV---------------------LSRF---HLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceE---------------------EEEE---ecCCCceeeecCCCCCcEEEEecCCC
Confidence 99999999999999999988877764 2221 244567899999 4 6677777 99
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVS 473 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s 473 (660)
.|+.||+++++.++.+..|-+.|..+.|-++| ++++.++|++++||+.+.+-.++... .+.....|+..+|++.++++
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 99999999999999999999999999999999 99999999999999998876655432 24456778999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCC
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 552 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 552 (660)
-+.|+.|.++.+...-.. .....+.||.- .+.-..+.|||||.+|++| .||.+.+||.++-+.+..+.. |..+
T Consensus 403 Qs~dN~i~ifs~~~~~r~---nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~ 476 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRL---NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQP 476 (503)
T ss_pred hccCceEEEEeccccccc---CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcc
Confidence 999999999997652211 11224567652 1455679999999999997 899999999999999888875 6899
Q ss_pred eEEEEEccCC-CEEEEEecCCeEEEEE
Q 006126 553 ITYATYSCDG-KCIYVSCKSGHVKVFD 578 (660)
Q Consensus 553 v~~~~~s~dg-~~l~sg~~dg~I~iwd 578 (660)
++.+.|+|.. ..+|+++.||.|++||
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999965 6899999999999996
No 58
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.3e-29 Score=270.71 Aligned_cols=311 Identities=18% Similarity=0.197 Sum_probs=236.7
Q ss_pred eEecCCCCEEEEEe--CCCcEEEEeccCcCCCcceeeeecCC-----CCCCCCeEEEEEecCCCEEEEEECCCcEEEEec
Q 006126 268 STSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 340 (660)
Q Consensus 268 ~~~spdg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~l~~-----~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~ 340 (660)
++.+|||..+++|+ .||.++||+.+............++. ..|.+.|.|+.|+|||+|||+||.|+.|.||+.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 49999999999999 89999999886321111000000111 239999999999999999999999999999986
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATY 420 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 420 (660)
..... +.. + +-++ | .-+++..+++..+.+|...|..
T Consensus 99 ~~~~~------------------~~~----f--gs~g-----------------~---~~~vE~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 99 AEIGS------------------GTV----F--GSTG-----------------G---AKNVESWKVVSILRGHDSDVLD 134 (942)
T ss_pred cccCC------------------ccc----c--cccc-----------------c---ccccceeeEEEEEecCCCccce
Confidence 53100 000 0 0000 0 1133456788889999999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
++|+|++ ++++++.|++|.+||..+.+.+.++++|.+.|..+.|.|-|++|++-+.|++|++|++.++..... +. -
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It-~ 211 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--IT-K 211 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--ec-c
Confidence 9999999 999999999999999999999999999999999999999999999999999999999877543221 11 1
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE--Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC------C------
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS--IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD------G------ 562 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~--~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d------g------ 562 (660)
+-.+.+.......+.|||||.+|++ +.+ .++.|.+-.+.+.-..+.+ |..++.++.|+|. .
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~ 289 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQ 289 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccC
Confidence 1112221246788999999999998 322 3688888877776667765 6889999999971 1
Q ss_pred -C----EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 563 -K----CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 563 -~----~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
. .+|+|+.|+.|-||.....+++..+... . +. .+++++|+| ||..|..||.||+|.+..+...+-
T Consensus 290 ~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f-----~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 290 PNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--F-----NK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred CCcceEEEEEecCCccEEEEecCCCCchhhhhhh--h-----cC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence 1 6789999999999999877776654311 1 22 255999999 899999999999999999987653
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.3e-29 Score=237.58 Aligned_cols=273 Identities=15% Similarity=0.175 Sum_probs=222.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G- 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~- 386 (660)
|.+.|.++... ++++++|+.||.+++|+...... .... ||.++|.+++|. +
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----------------------~~~~--Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----------------------KTIV--GHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceE----------------------EEEe--cCCcceeeeEEEecCC
Confidence 89999999887 78999999999999998754432 2111 899999999998 3
Q ss_pred --CEEEEEe-CCcEEEEECCCCeEE----EEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC--------------
Q 006126 387 --SHLFSAS-GGKISIFSLETFQTL----ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-------------- 444 (660)
Q Consensus 387 --~~l~s~~-dg~I~iwd~~~~~~~----~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~-------------- 444 (660)
..+++++ |.++++|..+.+... +...+|...|.++...++| .+++|+.|..|++|+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 3589999 999999998876543 2334999999999999999 99999999999999932
Q ss_pred -----------CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 445 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 445 -----------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
++.++..+.||..+|.++.|++ ...+.+++.|.+|+.||+.++...... ..+ ..+.++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~-----~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL-----TTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee-----ecC-----cceeEe
Confidence 1234567889999999999998 678999999999999999997543322 222 479999
Q ss_pred EEecCCcEEEE-EecCcEEEEeCCCCc--e-eeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCe-eEEE
Q 006126 514 QFHPDQIHLLS-IHEGQIDVYEAPTLN--H-TSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQ 587 (660)
Q Consensus 514 ~~sp~~~~l~~-~~d~~i~iwd~~~~~--~-~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~-~~~~ 587 (660)
..+|..++|++ +.|..|++||.+++. . .+++. +|...|.++.|+|.. .+|++|+.|+++++||+++.+ ++..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999999 599999999998753 2 34444 478999999999965 567899999999999999877 6776
Q ss_pred eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+. || .+. ++++.|+. +..+++||.|.+|+|+.-.
T Consensus 385 I~-------~h-~DK--vl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IA-------GH-NDK--VLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ec-------cC-Cce--EEEEeccC--CceEEeccCcceEEEeccc
Confidence 65 55 444 44999986 7899999999999998754
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.1e-29 Score=236.91 Aligned_cols=270 Identities=16% Similarity=0.254 Sum_probs=223.0
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEEeccCCceeeeee
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQSLEEE 350 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg---~~l~s~s~dg~i~vw~~~~~~~~~~~~ 350 (660)
+++|++|++||.+++||.. +.+... + .||.++|..++|--.. ..++++|.|.++++|.++.+.....
T Consensus 115 ~~~IltgsYDg~~riWd~~-----Gk~~~~-~--~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-- 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-----GKSIKT-I--VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-- 184 (423)
T ss_pred CceEEEeecCCeeEEEecC-----CceEEE-E--ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--
Confidence 7899999999999999997 344332 3 3599999988886433 3599999999999998776653111
Q ss_pred ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC------------------------
Q 006126 351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE------------------------ 403 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~------------------------ 403 (660)
.. ....||...|.++... |..+++|+ |..|.+|+..
T Consensus 185 ---------------~~--~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 185 ---------------AL--KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ---------------HH--hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 11 1112899999999987 89999999 9999999932
Q ss_pred -CCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126 404 -TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 482 (660)
Q Consensus 404 -~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v 482 (660)
++.++-++.+|..+|.++.|++.+.+++++.|.+|+.||+.++..+.++.+ ...++|+..+|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 123456778999999999999955999999999999999999999888874 567999999999999999999999999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEc
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s 559 (660)
||.+++. ...+...+.+|. +.|.++.|+|...++++ +.|+++++||+++.+ ++..+.. |...|.++.|.
T Consensus 327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~ 398 (423)
T KOG0313|consen 327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN 398 (423)
T ss_pred cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc--CCceEEEEecc
Confidence 9999974 233333678998 79999999998887766 499999999999887 8888865 69999999996
Q ss_pred cCCCEEEEEecCCeEEEEECC
Q 006126 560 CDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 560 ~dg~~l~sg~~dg~I~iwd~~ 580 (660)
++..|++|+.|.+|+|+.-.
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 57799999999999998654
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=240.58 Aligned_cols=279 Identities=12% Similarity=0.150 Sum_probs=232.8
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~--~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
..|||||++|++|+.||-|.+||..+++....++- .-.+ .-|.++|.|+.||.|...||+|+.||.|+||.+.++.+
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C 297 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC 297 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH
Confidence 38999999999999999999999986432221110 0000 11789999999999999999999999999999877765
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
++. +...|...|+|+.|+ +..+++++ |.++++--+.+|++++.|++|..-|+.+.
T Consensus 298 ---------------------lRr-FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 298 ---------------------LRR-FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred ---------------------HHH-hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 221 112699999999999 77899999 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
|.+|| .+++++.||+|++|+..+.+|+.+|+. ...+|+++..-| +-..++++...+++.+.++.. ..+.+
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVrs 429 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVRS 429 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEee
Confidence 99999 999999999999999999999998875 456788888777 456788899999999999876 33332
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
+..|... .+...+.+.+|.|.++++ +.|+.++.|.+.+|+.-.++.. |...+..++-+|..+.+++-++||.+++|
T Consensus 430 fsSGkRE-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 430 FSSGKRE-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred eccCCcc-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhc
Confidence 3333221 156778889999999999 8999999999999999888876 68889999999999999999999999999
Q ss_pred E
Q 006126 578 D 578 (660)
Q Consensus 578 d 578 (660)
.
T Consensus 507 k 507 (508)
T KOG0275|consen 507 K 507 (508)
T ss_pred C
Confidence 5
No 62
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.7e-29 Score=251.37 Aligned_cols=352 Identities=13% Similarity=0.144 Sum_probs=271.2
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC-----------CCEEEEEECC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQT 332 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd-----------g~~l~s~s~d 332 (660)
+.+++.|.|....+.+.-.|..++|||+.+....+++..+-. |...||.+.--|- ...++|++.|
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly----HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD 401 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY----HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD 401 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee----ccceeeeeccccccccCcccccCCccceeEecCC
Confidence 456789999999999999999999999999888888877543 8999999887661 1258999999
Q ss_pred CcEEEEeccCCcee----eeeeccceeEEEe---------cCCCCceeeecc-cCCCCCCeEEEEEe--CCEEEEEe-CC
Q 006126 333 ATHKLWKWQSNKQS----LEEENVNMESQLY---------QPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSAS-GG 395 (660)
Q Consensus 333 g~i~vw~~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~h~~~v~~v~~s--~~~l~s~~-dg 395 (660)
++|++|++...... ....+....-.+| |...+-.-+... .-+....+.+++.+ |++|++|. .|
T Consensus 402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG 481 (1080)
T ss_pred CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence 99999999863211 0000000000111 111111000000 00345679999999 99999999 89
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCC--
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL-- 468 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~----~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-- 468 (660)
.+++|++...+....+..|...|.|+.++.-. +|++++.|+-|.|||+... .+++++.+|...|+++.|.-+|
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 99999999998888999999999999998643 8999999999999998654 5678899999999999998877
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126 469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 547 (660)
..+++++.|..|.+--.+........+-.+-..++ ..++.|+..|..+++++ +.|..|+|||+.+++..+.|++.
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred eEEEeccCchhhheehhccccCceecccccccccc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 77999999988754322211000011111111122 47899999999999999 79999999999999999999875
Q ss_pred -CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126 548 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 626 (660)
Q Consensus 548 -~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~ 626 (660)
+|.+....+...|.|.||++.+.|.++.++|..+|+++.... ||.. - ++.+.|.+ |-+.|++++.||.
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE-~--VTG~kF~n-DCkHlISvsgDgC 706 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSE-A--VTGVKFLN-DCKHLISVSGDGC 706 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccch-h--eeeeeecc-cchhheeecCCce
Confidence 356888999999999999999999999999999999998876 6533 3 55999999 8999999999999
Q ss_pred EEEEeCCC
Q 006126 627 VHVIEPLE 634 (660)
Q Consensus 627 v~iw~~~~ 634 (660)
|.||.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999874
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=244.53 Aligned_cols=294 Identities=19% Similarity=0.223 Sum_probs=225.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|+..|.++++.|.|-.+++||.|-+|++||+........ .+....- .....|.++.|+ |+
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~P--~E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQP--CETHQINSLQYSVTGD 227 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccCc--ccccccceeeecCCCC
Confidence 889999999999999999999999999999876543110 0111001 234568899999 77
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEE------------cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATF------------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAK 451 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~------------~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~ 451 (660)
.|++.+ ....+++|-...+..... ++|...++|.+|+|+. .|++++.||++++||+..-+ ..++
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 666666 889999997654443322 4788899999999998 99999999999999987643 2333
Q ss_pred ee-----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126 452 LK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 525 (660)
Q Consensus 452 ~~-----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~ 525 (660)
++ +..-+++.++|+|||+.+++|+.||.|.+||..+.... +...+...|.+ ...|+|+.||+||++|++ |
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLP-GQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCC-CCceeEEEeccccchhhhcc
Confidence 32 23457889999999999999999999999998664322 22224456652 138999999999999999 8
Q ss_pred ecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECCCCeeEEEeecccccCCCC
Q 006126 526 HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAYAQPGT 598 (660)
Q Consensus 526 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~~~~~~~~~~~~~~~~~gh 598 (660)
.|+++++||++..+ ++.+..+-....+-+.++|||+.++|++|.. .|.+++||..+.+.+..+...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------- 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-------
Confidence 99999999998754 5555544334667788999999999999865 378999999999988888643
Q ss_pred cCcccceEEEEEecCCCCEEEEEeCCCeEEE-EeCCCCc
Q 006126 599 ISLELYPLVIAAHPLEPNRIALGLTNGRVHV-IEPLESE 636 (660)
Q Consensus 599 ~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i-w~~~~~~ 636 (660)
...|..+.||| .-+.+..|+.||+++| ||.+...
T Consensus 457 ---~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 ---TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred ---CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 23355899999 6778888888999988 5665543
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-27 Score=222.03 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=223.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
..+.|.++.|+++|.++++++.|.++++||..+++. ..... .++..+..++|. ..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~---------------------~~ti~--skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ---------------------VKTIN--SKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce---------------------eeEee--cccccccEEEEecCCc
Confidence 377999999999999999999999999888776654 22111 345567777777 44
Q ss_pred EEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 388 HLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 388 ~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.++.++ |.+|+..++.+.+.++.|.+|...|.+++.+|-+ .+++++.|++|++||++..++...+... .-..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCccee
Confidence 444443 7899999999999999999999999999999999 9999999999999999988877766533 334567
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee--ccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 540 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~ 540 (660)
|.|.|-++|++.....|++||++.-.. .+..++.. +.. ...+.+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 999999999998888999999998532 22222211 222 578899999999999996 778899999999998
Q ss_pred eeeecCCCCCC-CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 541 TSQLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 541 ~~~~~~~~~~~-~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
..++....... .-...+|+||++++++|+.||+|.+|++++|..+..+... +..++. ++.|+| .-.++|
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~~~--~~~fnP-~~~mf~ 291 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGPVS--CVRFNP-RYAMFV 291 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCCcc--ccccCC-ceeeee
Confidence 88887643332 2257889999999999999999999999999999888742 133344 889999 444555
Q ss_pred EEeCCCeEEEEeCCCCc
Q 006126 620 LGLTNGRVHVIEPLESE 636 (660)
Q Consensus 620 s~s~Dg~v~iw~~~~~~ 636 (660)
| .+..+.+|-+...+
T Consensus 292 s--a~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 292 S--ASSNLVFWLPDEDA 306 (311)
T ss_pred e--cCceEEEEeccccc
Confidence 5 46789999887543
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5e-30 Score=245.53 Aligned_cols=279 Identities=16% Similarity=0.181 Sum_probs=233.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.+.|..+.|-++...|++|+.|..|++|++..++.. .+..+. |..+.|+.+.|. +.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tLa--Gs~g~it~~d~d~~~~ 232 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------------------LISTLA--GSLGNITSIDFDSDNK 232 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhh-------------------hhhhhh--ccCCCcceeeecCCCc
Confidence 8999999999999888999999999999997766531 122111 677889999999 77
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
++++++ |+.+++|++...+...++.+|...|+++.|.... .+++|+.|.+|+.||+....+.+++- ....+..|..+
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 777766 9999999999999999999999999999999888 89999999999999999988887665 33455666665
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
...+++|-.|++|++||.++.......++. +.|+++..+++|..+.+ +.|.++.+.|+++......+
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecC----------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 567888999999999999996654444433 68999999999999998 59999999999998888777
Q ss_pred cCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 545 VPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 545 ~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.... .....+.+.|||++.|+++|+.||.|+||++.++++...+... + .+ -.+++++|+| .|..|++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s------~-s~-~aI~s~~W~~-sG~~Llsad 450 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS------T-SN-AAITSLSWNP-SGSGLLSAD 450 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC------C-CC-cceEEEEEcC-CCchhhccc
Confidence 6532 1455889999999999999999999999999999999888743 1 22 1355999999 799999999
Q ss_pred CCCeEEEEe
Q 006126 623 TNGRVHVIE 631 (660)
Q Consensus 623 ~Dg~v~iw~ 631 (660)
.++.+.+|.
T Consensus 451 k~~~v~lW~ 459 (459)
T KOG0288|consen 451 KQKAVTLWT 459 (459)
T ss_pred CCcceEecC
Confidence 999999994
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-28 Score=223.67 Aligned_cols=288 Identities=15% Similarity=0.190 Sum_probs=228.1
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.||..+++.+.|+.+|.+|.+++.|.+..||--.+++ .+-.+. ||.+.|+|+..+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe---------------------rlGty~--GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE---------------------RLGTYD--GHTGAVWCCDIDWD 63 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCc---------------------eeeeec--CCCceEEEEEecCC
Confidence 3599999999999999999999999999988654443 232222 899999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCC-------CCceeeE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPC-------TKKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~-------~~~~~~~ 451 (660)
.+++++|+ |.++++||+++|+++..++ ...+|..+.|+++| +++...++ +.|.++|++ ..++..+
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 88999999 9999999999999998886 45678999999999 66655543 479999988 4456777
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 530 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i 530 (660)
+..+...++.+.|.|-+++|++|..||.|..||+++|.. .+. ....|. ..|+.+.++||..++++ +.|.+-
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccCccc
Confidence 878889999999999999999999999999999999642 222 334565 68999999999999999 699999
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe--EEEEECCCCeeEEEeec-----ccccCCCCcCccc
Q 006126 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINL-----TAYAQPGTISLEL 603 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~--I~iwd~~~~~~~~~~~~-----~~~~~~gh~~~~v 603 (660)
++||+.+...++++.. ..+|++.+++|...+++.|+.... |.-=+.+.|+....+-. ..-...|| -+++
T Consensus 215 kl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPI 290 (327)
T ss_pred eeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCc
Confidence 9999999999999975 789999999998888877654322 22222222322211110 00113365 5667
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+ +++||| +|+..++|+.||.||+.-...
T Consensus 291 N--svAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 291 N--SVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred c--eeEECC-CCcccccCCCCceEEEEEecc
Confidence 7 999999 899999999999999976543
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-29 Score=225.97 Aligned_cols=287 Identities=14% Similarity=0.153 Sum_probs=235.4
Q ss_pred cccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE
Q 006126 247 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF 325 (660)
Q Consensus 247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~ 325 (660)
+..||.. |+.+.|+ -..|+|-+|++++.||.-.+-+-+ ++...- ++++ |.+.||......+...
T Consensus 9 ~c~ghtrpvvdl~~s--------~itp~g~flisa~kd~~pmlr~g~----tgdwig-tfeg--hkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFS--------PITPDGYFLISASKDGKPMLRNGD----TGDWIG-TFEG--HKGAVWSATLNKNATR 73 (334)
T ss_pred EEcCCCcceeEEecc--------CCCCCceEEEEeccCCCchhccCC----CCCcEE-eeec--cCcceeeeecCchhhh
Confidence 3467766 6776555 457899999999999987666555 344433 2544 9999999999999888
Q ss_pred EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEC
Q 006126 326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 402 (660)
Q Consensus 326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~ 402 (660)
-|+++.|-+.+|||.-++. .+..+ .|..-|.+++|+ .++|++|+ +..+++||+
T Consensus 74 aasaaadftakvw~a~tgd---------------------elhsf---~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGD---------------------ELHSF---EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhcccchhhhhhhhhhh---------------------hhhhh---hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 8899988888777654443 33322 588999999999 78999999 899999999
Q ss_pred CCCe-EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 403 ETFQ-TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 403 ~~~~-~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
+..+ +...+.+|.+.|..+.|.... .|++.+.|++|++||.+++..++++. .+.+|+++.++++|+++.+ ...+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCcee
Confidence 8754 466788999999999999888 88888999999999999999999987 5678999999999987765 457789
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 559 (660)
.+||..+...++...+. ..|.+..++|+...+++ +.|..++.||..++..+..+.. +|.++|.++.|+
T Consensus 208 ~Fwdaksf~~lKs~k~P----------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk-gh~gpVhcVrFS 276 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMP----------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK-GHFGPVHCVRFS 276 (334)
T ss_pred EEeccccccceeeccCc----------cccccccccCCCceEEecCcceEEEEEeccCCceeeeccc-CCCCceEEEEEC
Confidence 99999996554444333 57889999999988888 5999999999999999888633 479999999999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeeE
Q 006126 560 CDGKCIYVSCKSGHVKVFDTSTLELR 585 (660)
Q Consensus 560 ~dg~~l~sg~~dg~I~iwd~~~~~~~ 585 (660)
|||...++|++||+|++|.+..++..
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999876644
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=237.88 Aligned_cols=279 Identities=19% Similarity=0.260 Sum_probs=226.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
.+.|.+++|||...+=.+....-.+.+|+..+ ....+++. .....|+++.|. |.+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~---------------------~~~~k~~s--rFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT---------------------RSVRKTFS--RFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecch---------------------hhhhhhHH--hhccceeEEEeecCCeE
Confidence 57899999999775433333334555555433 22222222 367789999999 777
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
|++|. .|.|++||+.+...++.+.+|..++..+.|+|++ .+++|++|+.+++||+.+......+.+|+..|.|.+|+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 77777 7999999988777788899999999999999988 89999999999999999988766889999999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeee
Q 006126 466 LS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~ 544 (660)
|- +..+++|+.||+|++||+++.. ..+ ..-.|. .+|.++.+-|.|..++++..+.|++||+.+|...-..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~----~~v--~elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT----SRV--VELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC----cee--EEecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 94 5589999999999999999832 122 233455 6899999999999999988899999999866654443
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
.. .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+..+ ++ +++++.+| +++.++.|..|
T Consensus 234 ~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGmsn 300 (487)
T KOG0310|consen 234 MF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMSN 300 (487)
T ss_pred hh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEeccc
Confidence 33 37999999999999999999999999999999999999888753 33 45999999 88999999999
Q ss_pred CeEEEEeCCC
Q 006126 625 GRVHVIEPLE 634 (660)
Q Consensus 625 g~v~iw~~~~ 634 (660)
|.+.+=+...
T Consensus 301 Glv~~rr~~~ 310 (487)
T KOG0310|consen 301 GLVSIRRREV 310 (487)
T ss_pred ceeeeehhhc
Confidence 9988875443
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=218.62 Aligned_cols=275 Identities=15% Similarity=0.203 Sum_probs=217.9
Q ss_pred eEecCCC-CEEEEEe-------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEE
Q 006126 268 STSLPDA-DSAVCAK-------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLW 338 (660)
Q Consensus 268 ~~~spdg-~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw 338 (660)
+.|||-- .+||.+. ..|.+.|-+..+...-.++..+. -.+.+..++|+++. +.+++++.||++++|
T Consensus 14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEe
Confidence 3777742 2333332 34788888887544445555554 47899999999965 578889999999999
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~ 414 (660)
|...... .+..|. .|...|.++.|+ +..+++++ |++|++|+...++.++++.+|
T Consensus 89 d~~~~s~---------Pi~~~k-------------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 89 DLTMPSK---------PIHKFK-------------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ccCCCCc---------chhHHH-------------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 9543321 111222 699999999999 66777788 999999999999999999999
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeee
Q 006126 415 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL 491 (660)
Q Consensus 415 ~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~ 491 (660)
...|....|+|.. .+++++.|+++++||++..-....+..|...|.|+.|+. +.+.+++|+.|+.|+.||++.-+
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-- 224 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-- 224 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--
Confidence 9999999999977 999999999999999986544445888999999999988 67789999999999999999832
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCCcEEE-E-EecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEcc-CCCEEEE
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYV 567 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-dg~~l~s 567 (660)
.++. ...+|. -.|..+.|||...-++ + +.|-+++|||...+.. +.+.. .|...+..+.||+ ++.++|+
T Consensus 225 --~pl~-eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 225 --TPLF-ELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred --ccce-eecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeee
Confidence 4455 457887 6999999999765554 4 5899999999985543 33332 4788999999996 6789999
Q ss_pred EecCCeEEEEEC
Q 006126 568 SCKSGHVKVFDT 579 (660)
Q Consensus 568 g~~dg~I~iwd~ 579 (660)
.+.|+.++||+.
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 999999999985
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=253.72 Aligned_cols=270 Identities=20% Similarity=0.222 Sum_probs=231.2
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
+.++++++.|.++++||... +......+. ||.+.|++++|..-+.+|++|+.|.++++||..++..
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~----~~~i~~~l~--GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-------- 283 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNN----GYLILTRLV--GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-------- 283 (537)
T ss_pred cCeEEecCCCceeEEeeccc----ceEEEeecc--CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE--------
Confidence 77899999999999999984 555444454 4999999999998788999999999999988766654
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEE
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 431 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s 431 (660)
...+. +|...|.++...+.++++|+ |.+|++|++.++.++..+.+|..+|.++..+ + .+++
T Consensus 284 -------------~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 284 -------------THSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred -------------EEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEE
Confidence 33332 79999999988888899999 9999999999999999999999999999998 5 9999
Q ss_pred EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE
Q 006126 432 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 511 (660)
Q Consensus 432 ~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 511 (660)
|+.|++|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|++|++||+++.. .++. .+.+|. +-+.
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v~ 417 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLVS 417 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---cccc
Confidence 999999999999999999999999999999988655 899999999999999999942 4555 566776 4554
Q ss_pred EEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 512 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 512 ~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
.+. ..+++|++ +.|++|++||..++++++++... |...|..+++. ...+++++.||.+++||+++++....+
T Consensus 418 ~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 418 SLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 443 45778888 59999999999999999999764 56888888876 578889999999999999999988766
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=251.99 Aligned_cols=277 Identities=17% Similarity=0.197 Sum_probs=232.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|...+.+..|. +.++++++.|++|++|+...+.. +...+ .||.+.|+++++. +.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~---------------------i~~~l-~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL---------------------ILTRL-VGHFGGVWGLAFPSGGD 262 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE---------------------EEeec-cCCCCCceeEEEecCCC
Confidence 57788888888 55789999999998887655543 22211 2899999999999 89
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 466 (660)
+|++|+ |.++++||..+|.+...+.+|...|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|+++..+
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 999999 999999999999999999999999998877554 78889999999999999999999999999999999997
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeee
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQL 544 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~ 544 (660)
+.++++|+.|++|++||+.++ .++. ...+|. ..|.++.+.+. ..+++ +.|++|++||+++. +++.++
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 889999999999999999984 4455 566788 79999988876 67777 59999999999999 898888
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
.. |..-+..+. ..+++|++++.|+.|++||..+++++..+..+ | ...+. .+.+. ...+++++.|
T Consensus 410 ~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~-~~~v~--~l~~~---~~~il~s~~~ 473 (537)
T KOG0274|consen 410 QG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR------H-VGGVS--ALALG---KEEILCSSDD 473 (537)
T ss_pred cC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccC------C-cccEE--EeecC---cceEEEEecC
Confidence 65 566665554 45889999999999999999999999998731 1 22233 55543 3678899999
Q ss_pred CeEEEEeCCCCceec
Q 006126 625 GRVHVIEPLESEVEW 639 (660)
Q Consensus 625 g~v~iw~~~~~~~~w 639 (660)
|++++||+.+++..-
T Consensus 474 ~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLIR 488 (537)
T ss_pred CeeEEEecccCchhh
Confidence 999999999998744
No 72
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=245.85 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=209.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeee-cccCCCCCCeEEEEEe---
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~s--- 385 (660)
|-..|.....++|+..+++++.+.....|+...+.. .++....|..... ....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 344566677788877788888888888898655432 3344444432210 0112799999999998
Q ss_pred CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeecc
Q 006126 386 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 455 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~ 455 (660)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|++|++||+++++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 57899999 999999999765 3567788999999999999986 8999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E----ecCcE
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 530 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~----~d~~i 530 (660)
...|.+++|+|+|.+|++++.|++|++||+++++. +. ...+|.. ..+..+.|.+++..+++ + .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~-tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VS-SVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EE-EEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999999999999998643 22 2345542 34557889998888776 4 36899
Q ss_pred EEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 531 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 531 ~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
++||+++.. ++..... ++...+....|++++++|++|+. |+.|++||+.++++....... +..+.. .+
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-------s~~~~~--g~ 309 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-------SVEPHK--GL 309 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-------CCCCCc--ce
Confidence 999998755 3333322 23455666789999999998874 999999999999877665421 133344 67
Q ss_pred EEec
Q 006126 609 AAHP 612 (660)
Q Consensus 609 ~~sp 612 (660)
+|.|
T Consensus 310 ~~~p 313 (493)
T PTZ00421 310 CMMP 313 (493)
T ss_pred Eecc
Confidence 7777
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=220.09 Aligned_cols=240 Identities=19% Similarity=0.228 Sum_probs=205.5
Q ss_pred CCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCce
Q 006126 373 ADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT 448 (660)
Q Consensus 373 ~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~ 448 (660)
..|.+++++++.++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.++- .|++|+.||.|.+|+.....+
T Consensus 40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred cccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 379999999999999999999 9999999999999999999999999999999876 899999999999999999999
Q ss_pred eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecC
Q 006126 449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 528 (660)
Q Consensus 449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~ 528 (660)
+..+++|.+.|+.++.+|.|++.++.+.|+.+++||+-.|+......+. ...+.+.|+|.|.+++.+...
T Consensus 120 ~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 120 LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----------CcceeeEEcCCCCEEEEEecc
Confidence 9999999999999999999999999999999999999987654333333 234569999999999998788
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
.|-+|.+.+......+.. ...+.++.|. ++..|++|++|+.|.+||..+..+...+.. | ...|..+..
T Consensus 190 ~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-------H-~~RVK~i~~ 257 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA-------H-ENRVKDIAS 257 (362)
T ss_pred EEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec-------c-hhheeeeEE
Confidence 899999988777666643 3556677764 678899999999999999999888888774 3 455652222
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 609 AAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
--.| ++.+|+|+|.||.|+|||+...
T Consensus 258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecC-CceEEEEeccCceEEEEEcccc
Confidence 3356 7889999999999999999876
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.2e-28 Score=253.06 Aligned_cols=241 Identities=14% Similarity=0.185 Sum_probs=201.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--------------------------------C-------------
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F------------- 405 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~--------------------------------~------------- 405 (660)
.|.+.|+++.|+ |+|||+|+ |+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 699999999999 99999999 99999998744 0
Q ss_pred ---------------eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCC
Q 006126 406 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 469 (660)
Q Consensus 406 ---------------~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~ 469 (660)
++++.|.+|...|..+.|+.++.|++++.|.+|++|++...+++..|. |...|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 122345679999999999999999999999999999999999999998 999999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 006126 470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 548 (660)
Q Consensus 470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 548 (660)
++++|+-||.+|||++...+......++ .-|++++|.|||++.++| .+|.+++|+....+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999999999999999885443333333 479999999999999995 99999999998877766654432
Q ss_pred C------CCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 549 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 549 ~------~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
+ ...|+.+.|.|.. ..|++.+.|..|||||.++..++..++. .+.. -..+...|+. ||++|+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG-------~~n~-~SQ~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG-------FRNT-SSQISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-------cccC-CcceeeeEcc-CCCEEEEe
Confidence 2 3379999999744 4577778999999999999988888873 2221 1234689999 99999999
Q ss_pred eCCCeEEEEeCCC
Q 006126 622 LTNGRVHVIEPLE 634 (660)
Q Consensus 622 s~Dg~v~iw~~~~ 634 (660)
++|..|+||+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999744
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-28 Score=218.17 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=195.5
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc
Q 006126 375 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 375 h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~ 447 (660)
-.+.+..++|+ .+.+++++ ||.+++||... ..++..++.|...|.++.|++.. .+++++.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 56778999999 56677776 99999999643 45788899999999999999977 88889999999999999999
Q ss_pred eeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE-EE-
Q 006126 448 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS- 524 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~- 524 (660)
.++++.+|...|...+|+| ..+.++++|.|+++++||++..- +.+ ....|. ..+.++.|+.-...+ ++
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~--~i~ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFM--SIEAHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----cee--EEEecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 67899999999999999998742 222 244565 689999999865555 45
Q ss_pred EecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCc
Q 006126 525 IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISL 601 (660)
Q Consensus 525 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~ 601 (660)
+.|+.|+.||+++.+ ++..+. .|.-.|..+.|||.. ..|++++.|-+++|||...+.- +.+.. ||..
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~--gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--------~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELN--GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--------HHTE 279 (311)
T ss_pred CCCceEEEEehhhccccceeec--CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--------ccce
Confidence 499999999998755 455553 479999999999965 6889999999999999985432 33332 2243
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
- +..+.|++.++.++|+++.|+.++||++
T Consensus 280 F--v~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 F--VCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred E--EeccccccccCceeeecccccceeeecc
Confidence 3 4489999988999999999999999986
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=237.64 Aligned_cols=298 Identities=18% Similarity=0.184 Sum_probs=223.8
Q ss_pred cccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcc-eeeeecCCCCCCCCeEEEEEecCCC
Q 006126 247 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGD 324 (660)
Q Consensus 247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~l~~~~h~~~V~~~~~spdg~ 324 (660)
.+++|.+ |..+ .+-|.|-++++|+.|-+|++||+.++...-+ ++++ .|. ....|.+++||+.|.
T Consensus 162 ~l~hgtk~Vsal-----------~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~--E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 162 QLKHGTKIVSAL-----------AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPC--ETHQINSLQYSVTGD 227 (641)
T ss_pred eccCCceEEEEe-----------eecCCCceeeeccccceEEEEecccccccchhhhcc-Ccc--cccccceeeecCCCC
Confidence 4566666 4444 7889999999999999999999987543322 2332 333 466899999999999
Q ss_pred EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceee-ecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEE
Q 006126 325 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR---GSHLFSAS-GGKISI 399 (660)
Q Consensus 325 ~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~i 399 (660)
.|++.+....++|+|......... .+....+. .....||...++|.+|+ .+.+++++ ||++++
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~------------~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEF------------SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred eEEEEecCcceeEEccCCceeeee------------eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 999999999999999766543111 01111111 11112899999999999 55677888 999999
Q ss_pred EECCCCeE-EEEEc-----CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeEeeccCC--CeEEEEEeCC
Q 006126 400 FSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQN--RITCLAYSLS 467 (660)
Q Consensus 400 wd~~~~~~-~~~~~-----~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~~~--~v~~l~~sp~ 467 (660)
||+...+. .+.++ +..-.++.++|+||| .||+|..||+|.+|+..+... ...-..|.. .|+|+.|++|
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d 375 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD 375 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence 99976543 22332 334467899999999 999999999999999754322 233355776 8999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-------ecCcEEEEeCCCCce
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYEAPTLNH 540 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-------~d~~i~iwd~~~~~~ 540 (660)
|++|++-+.|+++++||++..+ .++.....-.++ ..-+.++|||+.++|++| ..+.+.+||..+...
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~k----kpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFK----KPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred cchhhhccCCCceeeeeccccc----cchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 9999999999999999999843 344311111111 356689999999999984 135799999999998
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
++.+... ...|..+.|+|.=+.|.+|+.||.++||-
T Consensus 450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEecCC--CceEEEEeecchhhheeeecCCCceEEEE
Confidence 8888653 78899999999999999999999999864
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-27 Score=213.08 Aligned_cols=271 Identities=15% Similarity=0.147 Sum_probs=215.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.+..+|.+|.+++.|.+..+|-..++ .++-. + .||++.|||+..+-+.+++++|+.|.++++||+++++...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nG---erlGt--y--~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGT--Y--DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCC---ceeee--e--cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 389999999999999999999987642 33333 3 3599999999999999999999999999999998887621
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeC------CcEEEEECC-------CCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFA 412 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~d------g~I~iwd~~-------~~~~~~~~~ 412 (660)
.|+ ...+|..+.|+ |++++.+.| +.|.++|++ ..++...+.
T Consensus 89 ----------~~k--------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 89 ----------TWK--------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ----------Eee--------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 222 55678899999 666665554 479999997 455678888
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 006126 413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 490 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~ 490 (660)
.+...++.+-|.|-+ .|++|..||.|.+||+++|+. +..-+.|...|+.+.++||..++++++.|.+-++||.++-+.
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 888999999999999 999999999999999999854 455567999999999999999999999999999999999443
Q ss_pred eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCCCc------------eeeeecCCCCCCCeEE
Q 006126 491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN------------HTSQLVPDKMDLPITY 555 (660)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~~~------------~~~~~~~~~~~~~v~~ 555 (660)
++... .. .+|++.+++|....++.+ .+ ..|.-=+.+.|+ .+..++ .|-++|++
T Consensus 225 ~Kty~------te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINs 292 (327)
T KOG0643|consen 225 LKTYT------TE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINS 292 (327)
T ss_pred EEEee------ec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcce
Confidence 33222 22 479999999987777763 22 223333333332 333343 37999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCC
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
++|+|+|+-.++|++||.|++.....
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999986553
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2e-26 Score=238.63 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=261.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCC-CCeEEEEEecCCCEE-EEEECCCcEEEEeccCCce
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~-~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~ 345 (660)
+.-+|--..+|.|..+|+|.|+++.. ...+..++ |. ++|+.++|..||+.+ ++|+..|.+.+||++..+.
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~---dkil~sFk-----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKF---DKILMSFK-----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEccc---CcEEEEEE-----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 37788888999999999999999986 34455544 54 899999999999755 5555679999999987665
Q ss_pred eee----------------------eecccee--EEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcE
Q 006126 346 SLE----------------------EENVNME--SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKI 397 (660)
Q Consensus 346 ~~~----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I 397 (660)
... ....+.+ +.++|...|........+||..+..|+.|. +..+.+++ |++.
T Consensus 280 ~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 280 INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 322 1122222 345565555443333455899999999998 77888888 8877
Q ss_pred EEEECCC-------Ce--------EE---------------------------------------------------EEE
Q 006126 398 SIFSLET-------FQ--------TL---------------------------------------------------ATF 411 (660)
Q Consensus 398 ~iwd~~~-------~~--------~~---------------------------------------------------~~~ 411 (660)
+.+++.. ++ .+ ..+
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 7776521 00 00 000
Q ss_pred -----cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126 412 -----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLCV 482 (660)
Q Consensus 412 -----~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v 482 (660)
+.....+++++.++.| ..+.|+..|+|-+|++++|-....+ ..|.++|++++...-++.+++++.+|.+.+
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 0122567899999999 8899999999999999999888888 479999999999988999999999999999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
||......... +.-+ ..+..+..+.....++. ..|-.|+++|+.+.+.++.+.+ |...|++++||||
T Consensus 520 w~f~~k~l~~~-----l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~D 587 (910)
T KOG1539|consen 520 WDFKKKVLKKS-----LRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPD 587 (910)
T ss_pred EecCCcceeee-----eccC-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCC
Confidence 99998543222 2223 46888888888888887 5788999999999999999976 7999999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCC
Q 006126 562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPL 633 (660)
Q Consensus 562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~ 633 (660)
|+||++++.|++|++||+.++.++..+.. +.+ ++.+.|+| +|.+|||+..| .-|++|.=.
T Consensus 588 grWlisasmD~tIr~wDlpt~~lID~~~v---------d~~--~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGTLIDGLLV---------DSP--CTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcceeeeEec---------CCc--ceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 99999999999999999999999987754 333 45899999 89999999988 679999643
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-27 Score=239.93 Aligned_cols=272 Identities=18% Similarity=0.225 Sum_probs=225.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++|+ ....+|.|. ...|.+|+... +.+..+. . .+.+.|+++.|+++|.+|++|..+|.|.|||....+...
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s----~~v~~l~--~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASS----GSVTELC--S-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCC----CceEEeE--e-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence 4777 334455444 35699999984 4444321 1 147899999999999999999999999999977665411
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcC
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP 425 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp 425 (660)
. +..+|...|-+++|.+..+.+|+ ++.|..+|+...+..-. +.+|...|..+.|++
T Consensus 254 ---------------------~-~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 254 ---------------------T-LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred ---------------------c-ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 1 11138999999999988999999 99999999988765544 789999999999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
|+ ++|+|+.|+.+.|||.....++..+..|...|..++|+| ....||+|+ .|+.|++||..++..+.. +..
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~-----vdt 386 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS-----VDT 386 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc-----ccc
Confidence 99 999999999999999988888999999999999999999 566788764 699999999999754433 233
Q ss_pred ccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 502 GLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
+ +.|.++.|++..+.|++ | .++.|.||+..+.+.+..+.+ |...|..++++|||..+++|+.|.++++|+
T Consensus 387 g-----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 387 G-----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG--HTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred C-----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--CcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 3 68999999999988877 4 678999999999998888876 789999999999999999999999999999
Q ss_pred CCCC
Q 006126 579 TSTL 582 (660)
Q Consensus 579 ~~~~ 582 (660)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8764
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=235.93 Aligned_cols=270 Identities=12% Similarity=0.105 Sum_probs=203.2
Q ss_pred EEecCCCCc----eeeecccCCCCCCeEEEEEe-------------CCEEEEEe-CCcEEEEECCCCeEEEEE-------
Q 006126 357 QLYQPSSKL----VMTNDIAADPKDSISCFALR-------------GSHLFSAS-GGKISIFSLETFQTLATF------- 411 (660)
Q Consensus 357 ~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s-------------~~~l~s~~-dg~I~iwd~~~~~~~~~~------- 411 (660)
.+||..+.. +...+ -|...|+.+.-. ...+++++ |++|++||+..+..-..+
T Consensus 349 YvWDvrD~~kvgk~~s~l---yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~ 425 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSML---YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA 425 (1080)
T ss_pred EEEeccccccccceeeee---eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence 677765433 22222 377777766432 24578888 999999999753211110
Q ss_pred ------------------------------cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 412 ------------------------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 412 ------------------------------~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
-....++.+++.+|+| +|++|..-|.++||++..-+....++.|...|.
T Consensus 426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil 505 (1080)
T KOG1408|consen 426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL 505 (1080)
T ss_pred hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence 0123468999999999 999999999999999998888888999999999
Q ss_pred EEEEeC---CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEE-EecCcEEEEe
Q 006126 461 CLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYE 534 (660)
Q Consensus 461 ~l~~sp---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~-~~d~~i~iwd 534 (660)
|+.|+. ..++|++++.|+.|.+||... ...+.....+|. +.|+++.|.-+| ..+++ |.|..|.+--
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HS---ssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHS---SSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccc---cceeEEEEeecCCceEEEeccCchhhheeh
Confidence 999976 357899999999999999976 334444778888 799999998877 56666 6887765543
Q ss_pred CCCCceeeeecCCC---CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126 535 APTLNHTSQLVPDK---MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 611 (660)
Q Consensus 535 ~~~~~~~~~~~~~~---~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 611 (660)
.+.......+..+. ....++.++..|..+++++++.|..|+||++.+|+....++.. +++.-..+.+...
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-------~~~eG~lIKv~lD 650 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-------RDHEGDLIKVILD 650 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc-------ccCCCceEEEEEC
Confidence 33211111222111 1567899999999999999999999999999999999998843 2333335578999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 612 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
| .|.|+|+...|.++.++|.-+|++...+....
T Consensus 651 P-SgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 651 P-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred C-CccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 9 89999999999999999999999866555443
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=218.17 Aligned_cols=288 Identities=12% Similarity=0.140 Sum_probs=226.0
Q ss_pred ceeeEecCCCCEEEEEeCCCcEEEEeccCcCCC-------------cceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC
Q 006126 265 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------------SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 331 (660)
Q Consensus 265 ~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~ 331 (660)
.++..|||||.++|+|+.|..|+|.|++.+-.. ......+| ..|.++|.++.|+|....|++|+.
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl--YDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL--YDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh--hhccCcccceeecchhheEEeccC
Confidence 344699999999999999999999999721100 00111123 348999999999999999999999
Q ss_pred CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE
Q 006126 332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL 408 (660)
Q Consensus 332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~ 408 (660)
|++|++||+....... ..+. + ....+|.++.|+ |++|+.|. ..++++||+++.++.
T Consensus 193 D~tvKlFDfsK~saKr------------------A~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKR------------------AFKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred CCeEEEEecccHHHHH------------------HHHH-h--hccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 9999999986543200 0110 1 245679999999 99999999 479999999999887
Q ss_pred EEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-cC-CCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126 409 ATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ-NRITCLAYSLSLNVLVSSGADAQLCV 482 (660)
Q Consensus 409 ~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~-~~v~~l~~sp~~~~l~s~s~dg~i~v 482 (660)
..-. .|...|+++.+++.| +.++|+.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.+.|..+++
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 6543 688999999999999 999999999999999989999988854 54 57889999999999999999999999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
|.+.+++.+....=. -..+.. ..-+...|+....|++.- ..+.+.-||.+++..+..+.. +|.+.+..+.-||
T Consensus 332 WEi~t~R~l~~YtGA-g~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP 406 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGA-GTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSP 406 (430)
T ss_pred eeecCCceEEEEecC-Ccccch---hhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCC
Confidence 999997643321100 001111 123346678788888873 668899999999887766655 5899999999999
Q ss_pred CCCEEEEEecCCeEEEEECC
Q 006126 561 DGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 561 dg~~l~sg~~dg~I~iwd~~ 580 (660)
.+.-+++++.|..+++|--+
T Consensus 407 ~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCceeeecccceeeeeeec
Confidence 99999999999999999654
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-25 Score=197.80 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=224.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
.+..|.+++|+|.|...+.|+..++.+|-....-......+..... +..-.+.+ ...|.+.|+|.+|+ |+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~-----pp~v~~kr---~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ-----PPSVLCKR---NKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC-----CCeEEeee---ccccCccEEEEEecCccC
Confidence 3778999999999999999999999988654322110000000000 00000111 12699999999999 99
Q ss_pred EEEEEe-CCcEEEEECCCCeE-----EEEEcCCCCCeEEEEEcCC----C-eEEEEe-CCCeEEEEeCCCCceeeEeecc
Q 006126 388 HLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKGH 455 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~-----~~~~~~~~~~v~~v~~sp~----~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~ 455 (660)
+|++|+ |.+|++.-.+...+ -..|..|.+.|..++|-.+ + .|++++ .|..|++-|...|+..+.+.+|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999 99999987654332 2356789999999999643 2 566554 5778999999999999999999
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 534 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd 534 (660)
.+.|.++ ++-+|-.+++|+.|.+|++||++-...+....-. +.+..-.++.|.+++..|.|++|+++ .|....+||
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCc--ccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 9999887 5557889999999999999999985443322111 11111112689999999999999997 889999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
++-++.++.+.+ |...|.++.|||...|+++++.|..|++-|+... +...+... +...|.+. ++.+.|+|+
T Consensus 260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~--vv~ehkdk---~i~~rwh~~- 330 (350)
T KOG0641|consen 260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIM--VVAEHKDK---AIQCRWHPQ- 330 (350)
T ss_pred eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceE--EEEeccCc---eEEEEecCc-
Confidence 999999999965 7999999999999999999999999999998742 22222110 01123232 447999995
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 006126 615 PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~ 633 (660)
.--+++.+.|.++.+|-++
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 4667888999999999764
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-26 Score=210.98 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=204.3
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCce
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 448 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~ 448 (660)
....|.++.|+ |.++++++ |.++++||..+++.++++..+..++..+.|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46779999999 88999988 8899999999999999999998999999998777 6666655 88999999999999
Q ss_pred eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126 449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 527 (660)
Q Consensus 449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d 527 (660)
++.|.||...|+++..+|-+..+++++.|++|++||++..++.....+ ..-..++|.|+|-++|++ ..
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999997443222111 123368999999999996 44
Q ss_pred CcEEEEeCCCC--ceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126 528 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 528 ~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
+.|++||++.. .+..++... ......+.+.|||||++|+.+...+.+++.|.-+|.....+..+. ...-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCc
Confidence 49999999863 445555443 236778899999999999999999999999999999988887542 22112
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.....|.| |++++++|++||+|.+|+++++..
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcE
Confidence 35789999 899999999999999999999976
No 84
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=237.00 Aligned_cols=286 Identities=11% Similarity=0.052 Sum_probs=207.9
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcC------CCcceee--eecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEe
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 339 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~------~~~~~~~--~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~ 339 (660)
..++|+..+++++.+.....|+..++. +.++... ..+ .||.+.|.+++|+| ++++|++|+.|++|++|+
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l--~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL--LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE--eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 456676666777777666677654311 0111110 112 35999999999999 889999999999999999
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP 415 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~ 415 (660)
+....... .....+..+ .+|...|.+++|+ +++|++++ |++|++||+.+++....+.+|.
T Consensus 105 i~~~~~~~--------------~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 105 IPEEGLTQ--------------NISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred cCCCcccc--------------ccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 87653200 001111111 1799999999999 36899999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCCCCEEEEEe----CCCcEEEEEcCCCe
Q 006126 416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWK 489 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s----~dg~i~vwd~~~~~ 489 (660)
..|.+++|+|+| .|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999999999 9999999999999999999999999888765 44677999888877654 47899999998743
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
.++. ....+.. ..+....|++++.++++ + .|+.|++||+.+++.+..... .+..++..++|.|.-..=+
T Consensus 249 ----~p~~-~~~~d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~dv- 319 (493)
T PTZ00421 249 ----SPYS-TVDLDQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSLDT- 319 (493)
T ss_pred ----Ccee-EeccCCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccccccc-
Confidence 2222 1121221 35666789999999888 5 599999999999988766543 2466788888888532211
Q ss_pred EecCCeEEEEECCCC
Q 006126 568 SCKSGHVKVFDTSTL 582 (660)
Q Consensus 568 g~~dg~I~iwd~~~~ 582 (660)
..--..++|.+...
T Consensus 320 -~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 320 -RKCEIARFYALTYH 333 (493)
T ss_pred -cceeeeEEEEecCC
Confidence 11223466666543
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=238.90 Aligned_cols=326 Identities=17% Similarity=0.183 Sum_probs=245.2
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCC-CcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeee
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 350 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~ 350 (660)
|.+++|++|+.||.|++|+...... +.......++. |.+.|..++...+|+.|+++|.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~----- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT----- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-----
Confidence 6778999999999999999874221 11111223443 999999999999999999999999999998765531
Q ss_pred ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe--EEE--------EEc-CCC
Q 006126 351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLA--------TFA-NPP 415 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~--~~~--------~~~-~~~ 415 (660)
.++..+ +.|.+.|.|+++- ...+|+|+ |+.|.+||++++. .+. .+. ++.
T Consensus 108 --------------~c~sti--r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 108 --------------FCMSTI--RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred --------------hhHhhh--hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 122211 2699999999994 66888899 9999999999873 222 222 677
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126 416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 494 (660)
..|++++.++.| .|++|+..+.+++||.++++.+..++||...|.++..++||+.+++++.||+|++||+.. .+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-----Qr 246 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-----QR 246 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----cc
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999998 35
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
++. ...-|. ..|.++..+|+-..+++ +.||.|..=|+++. +....+.. ..+|..+..+...+-+-+++.|+
T Consensus 247 Cl~-T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 247 CLA-TYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred eee-eEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeeccc
Confidence 555 355566 46999999999999999 49999999999984 33333332 66777777775444446677889
Q ss_pred eEEEEECCCCeeEEEe---------------e---cccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 573 HVKVFDTSTLELRCQI---------------N---LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 573 ~I~iwd~~~~~~~~~~---------------~---~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
.|+-|...-...+... . .+.....| +..+. ..+.-. |.++++|=..+|.+.+||+..
T Consensus 320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~--k~~mL~-dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIK--KHAMLN-DKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred cceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhhh--hhhhhc-CcceEeeecCCCCEEEEEeee
Confidence 9998876532111000 0 01111222 11111 233333 678899999999999999987
Q ss_pred Cce
Q 006126 635 SEV 637 (660)
Q Consensus 635 ~~~ 637 (660)
++.
T Consensus 395 ~~~ 397 (735)
T KOG0308|consen 395 CVK 397 (735)
T ss_pred eee
Confidence 643
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.5e-28 Score=226.94 Aligned_cols=286 Identities=15% Similarity=0.177 Sum_probs=225.0
Q ss_pred ccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE
Q 006126 248 SSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF 325 (660)
Q Consensus 248 ~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~ 325 (660)
+.||.+ |..+ +-.|.. ..+++|+.||.|+|||+.. ..+. .++.. |.+.|..+++.. ..
T Consensus 62 L~gHrdGV~~l-----------akhp~~ls~~aSGs~DG~VkiWnlsq----R~~~-~~f~A--H~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 62 LDGHRDGVSCL-----------AKHPNKLSTVASGSCDGEVKIWNLSQ----RECI-RTFKA--HEGLVRGICVTQ--TS 121 (433)
T ss_pred ccccccccchh-----------hcCcchhhhhhccccCceEEEEehhh----hhhh-heeec--ccCceeeEEecc--cc
Confidence 467777 4443 445555 5789999999999999973 3332 23544 899999999987 56
Q ss_pred EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECC
Q 006126 326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLE 403 (660)
Q Consensus 326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~ 403 (660)
++++|.|.+|+.|.+..... ..+. ....+..+.-+ +..+++ +...|.|||..
T Consensus 122 ~~tvgdDKtvK~wk~~~~p~-----------~til--------------g~s~~~gIdh~~~~~~FaT-cGe~i~IWD~~ 175 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGPPL-----------HTIL--------------GKSVYLGIDHHRKNSVFAT-CGEQIDIWDEQ 175 (433)
T ss_pred eEEecCCcceeeeeccCCcc-----------eeee--------------ccccccccccccccccccc-cCceeeecccc
Confidence 89999999999998765321 1111 23344555555 334444 35579999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126 404 TFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 481 (660)
Q Consensus 404 ~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~ 481 (660)
...+++.+.-....|.++.|+|.. .|++|+.|+.|.+||++++.+++++. -...-+.|+|+|.+-.+++|+.|..++
T Consensus 176 R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 176 RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccce
Confidence 999999999888889999999988 88999999999999999999888775 345567899999888899999999999
Q ss_pred EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126 482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
.||++.- ..++. ...+|. +.|.++.|||.|+-+++ |.|.+|+||.++.+.....+... .-..|.++.||-
T Consensus 255 ~~DmR~l----~~p~~-v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 255 TYDMRNL----SRPLN-VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSM 325 (433)
T ss_pred ehhhhhh----cccch-hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEec
Confidence 9999873 35555 667887 79999999999999999 69999999999887765555332 256799999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 561 DGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
|.+|+++|++|+.|++|.....+.+..+.
T Consensus 326 Dskyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred cccEEEecCCCcceeeeecchhhhcCCCC
Confidence 99999999999999999987766554443
No 87
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8e-28 Score=226.76 Aligned_cols=289 Identities=11% Similarity=0.132 Sum_probs=222.9
Q ss_pred CCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126 308 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 385 (660)
.||.++|.|++=+|.. ..+++|+.||.|++||+....+. ..+ ..|.+.|..+++.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~---------------------~~f--~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI---------------------RTF--KAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh---------------------hee--ecccCceeeEEecc
Confidence 3599999999999987 78999999999999998765541 111 1699999999999
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
+..+-+|.|.+|+.|.+.- .+.+++.+ ...+..+.-+..+ .+++||.+ |.|||..-..++..+.--...|.++.|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEec
Confidence 5555444599999999874 45555543 3345566666666 88888764 889999888899998877888999999
Q ss_pred eCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc-ee
Q 006126 465 SLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HT 541 (660)
Q Consensus 465 sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~-~~ 541 (660)
+|... .|++++.|+.|.+||++++.......+. ..-+.++|+|.+-.++++ .|..++.||++... ++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhcccc
Confidence 99664 5667779999999999997655433333 345689999966666664 88999999998754 44
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
..+. +|...|.++.|||.|+-+++|+.|.+|+||.++.+.....+.. ...-.+.||.|+. |.+++++|
T Consensus 266 ~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------kRMq~V~~Vk~S~-Dskyi~SG 333 (433)
T KOG0268|consen 266 NVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------KRMQHVFCVKYSM-DSKYIISG 333 (433)
T ss_pred hhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------hhhheeeEEEEec-cccEEEec
Confidence 5554 4789999999999999999999999999999998875555432 2223366999999 89999999
Q ss_pred eCCCeEEEEeCCCCceeccCCCCcc
Q 006126 622 LTNGRVHVIEPLESEVEWGKLPFTD 646 (660)
Q Consensus 622 s~Dg~v~iw~~~~~~~~w~~~~~~~ 646 (660)
|+|+.|++|.....+. .++..+.|
T Consensus 334 Sdd~nvRlWka~Asek-lgv~t~rE 357 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEK-LGVITPRE 357 (433)
T ss_pred CCCcceeeeecchhhh-cCCCChhH
Confidence 9999999999876543 34444433
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=196.12 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=227.4
Q ss_pred eecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC----------CCcceeeeecCCCCCCCCeEEEEEecCCCEEE
Q 006126 258 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN----------EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 327 (660)
Q Consensus 258 ~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~ 327 (660)
.+++....+++.|.|.|...+.|+...+.+|.-..... .+..+... -..+ |.+.|.|.+|||+|+.|+
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~k-r~kh-hkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCK-RNKH-HKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEee-eccc-cCccEEEEEecCccCeEE
Confidence 45566666778999999999999999999987543211 11111111 1112 899999999999999999
Q ss_pred EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEE
Q 006126 328 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISI 399 (660)
Q Consensus 328 s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~i 399 (660)
+|+.|++|++..+....... +|.-+... -|.+.|..++|- +..|++++ |..|.+
T Consensus 106 tgsndk~ik~l~fn~dt~~~---------------~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNA---------------TGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred ecCCCceEEEEecccccccc---------------cCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 99999999987655443311 12111111 388999999997 55788887 677888
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--c-----CCCeEEEEEeCCCCEE
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--H-----QNRITCLAYSLSLNVL 471 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~l 471 (660)
-|..+|+....+.+|.+.|.++ ++-+| .+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|
T Consensus 168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 8999999999999999998765 45567 999999999999999998888877642 2 3578999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce---eeeecCC
Q 006126 472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPD 547 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~ 547 (660)
++|-.|....+||++.++ .++ .+..|. ..|.++.|+|...|+++ +.|..|++-|+. |.. +..+...
T Consensus 247 ~sg~~dssc~lydirg~r-----~iq-~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ 316 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGGR-----MIQ-RFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVA 316 (350)
T ss_pred eeccCCCceEEEEeeCCc-----eee-eeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEE
Confidence 999999999999999964 444 445666 79999999999999999 599999999985 322 2222233
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
.|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 578889999999999889999999999999764
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=227.65 Aligned_cols=274 Identities=15% Similarity=0.119 Sum_probs=222.6
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.+.|-++...|++|+.|..|++|+..+.+ .... -+|.+ ..++|..+.|.+++.++++++.|+.+++|++.....
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~-~tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~- 253 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELI-STLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL- 253 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccch--hhhh-hhhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccchhh-
Confidence 34888999999999999999999998522 1111 12433 578899999999999999999999999998766543
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
+.++. ||++.|+++.|. ++. +++|+ |.+|+.||+....|.+++-. ...+..|..
T Consensus 254 --------------------~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~ 310 (459)
T KOG0288|consen 254 --------------------RHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVC 310 (459)
T ss_pred --------------------hhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEe
Confidence 22222 799999999999 444 99999 99999999999888877642 233445555
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
+ . .+++|..|+.|+.||.++..+......+. .|+++..+++|..+.+++.|.++.+.|+++.+........-...+
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 4 4 78999999999999999999998888665 999999999999999999999999999999554322222212222
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
...+.+.|||++.|+++ |.||.|+||++.++++...+........|++++|+|.|..+++++.++.+.+|
T Consensus 388 -----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 388 -----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 35788999999999999 59999999999999998888775434479999999999999999999999999
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=209.03 Aligned_cols=247 Identities=15% Similarity=0.176 Sum_probs=211.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~ 446 (660)
+|...|.+++|+ |..|++|+ |+++.+|++...+..... .+|...|-.++|+|.. .+++++.|.+|++||++++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 689999999999 99999999 999999999887555443 4888899999999987 9999999999999999999
Q ss_pred ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126 447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 525 (660)
Q Consensus 447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~ 525 (660)
++........+.+ -+.|+|+|.++++++.|..|.+.|.++.+........ ..+..++|+.++..++. .
T Consensus 98 k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 98 KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence 9998887555554 4679999999999999999999999985544333333 46788999977777666 5
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126 526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
..|+|.|......++++++.. |.....++.|+|+|+++|+|+.|..+.+||+..--++..+... +-+|.
T Consensus 167 GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR- 235 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR- 235 (313)
T ss_pred CCceEEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence 779999999999999999875 7899999999999999999999999999999887777666532 55566
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 606 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
.++|+. ||++||+||+|..|-|=++.+|+..|..+..
T Consensus 236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPCE 272 (313)
T ss_pred -EEEecc-CcceeeccCccceEEeEecccCCeEEEeecc
Confidence 899999 8999999999999999999999988876543
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-26 Score=234.55 Aligned_cols=237 Identities=17% Similarity=0.247 Sum_probs=205.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
+...|+++.|+ |.+|++|. +|.|.|||..+.+.++.+.+ |...|.+++|+.. .+.+|+.|+.|..+|++..+...
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhh
Confidence 37889999999 99999999 99999999999999999998 9999999999832 89999999999999999877655
Q ss_pred E-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE---
Q 006126 451 K-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI--- 525 (660)
Q Consensus 451 ~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~--- 525 (660)
. +.+|...|..++|++|+.++++|+.|+.+.|||... ..+.. ....|. +.|..++|+|-. ..||+|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-----~~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-----PEPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-----ccccE-EEeccc---eeeeEeeeCCCccCceEEcCCC
Confidence 5 888999999999999999999999999999999965 23334 466787 799999999954 456663
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
.|++|++||..++..+..+.. ...|.++.|++..+-|++ |..++.|.||+..+.+++..+. || ...
T Consensus 366 ~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------gH-~~R- 433 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------GH-TSR- 433 (484)
T ss_pred cccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-------CC-cce-
Confidence 789999999999999888743 789999999999877765 4456889999999988888876 55 333
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
++.++++| ||..+++|+.|.++++|++-..
T Consensus 434 -Vl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 -VLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -eEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 55999999 8999999999999999999764
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.9e-26 Score=231.45 Aligned_cols=274 Identities=15% Similarity=0.181 Sum_probs=227.1
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEe-
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s- 385 (660)
.||...|..+++.+.. .++++|.||++++|+-..... +......+|.+.|.+ +++.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSICYAE 68 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccceecc
Confidence 3599999999877655 689999999999998654433 111111256666665 6666
Q ss_pred --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126 386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 462 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l 462 (660)
+..+++|+ |++|.+|......+..++.+|...|.|++...++.+++||.|.++++|-. +++...+.+|+..|+++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeee
Confidence 45688888 99999999999999999999999999999887778999999999999965 67788899999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~ 542 (660)
..-|++ .+++|+.|.+|++|.-.+ .++ .+.+|. ..|+.+++-+++.++-++.||.|++|++ +|.++.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999988 889999999999998643 444 577898 7999999999988888899999999999 888888
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+.+ |...|++++...++..++++++|++++||+.. ++.+.+..+ ...+| ++.+-+ +| -+++|+
T Consensus 214 ~~~g--htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-Ng-DIvvg~ 277 (745)
T KOG0301|consen 214 EMHG--HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NG-DIVVGG 277 (745)
T ss_pred eeec--cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CC-CEEEec
Confidence 8855 79999999988899999999999999999987 677777643 33466 777776 55 467888
Q ss_pred CCCeEEEEeCCC
Q 006126 623 TNGRVHVIEPLE 634 (660)
Q Consensus 623 ~Dg~v~iw~~~~ 634 (660)
.||.||||....
T Consensus 278 SDG~VrVfT~~k 289 (745)
T KOG0301|consen 278 SDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEEecc
Confidence 899999999873
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.7e-26 Score=220.00 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=231.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC-----CCceeeecccCCCCCCeEEEEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
|.-+|.+|+++|++++.++++.+|+|.-|++.+++... .+|... .+...+..- .+|...+.+++.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~---------~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDR---------YIIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccc---------cccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 89999999999999999999999999999998887421 122211 111111111 268899999999
Q ss_pred e--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 385 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 385 s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
+ |+||++|+ |..|.||+.++.+.++.+.+|.+.|.+++|-... .+++++.|++|++|+++....+.++.+|++.|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9 99999999 9999999999999999999999999999998777 999999999999999999888999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 540 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~ 540 (660)
++....-++.+-+|+.|+++++|++... .+.++.++. +.+.|++|-.+..++..+.+|.|.+|++.+.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9998888888888889999999999542 222556666 689999999776555557999999999999998
Q ss_pred eeeecCCCC----------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCC----eeEEEeecccccCCCCcCcccceE
Q 006126 541 TSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL----ELRCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 541 ~~~~~~~~~----------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
+.+....++ ...|++++..|..+++++|+.+|.|++|.+..+ .++..+.. .+. ++
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~Gf--VN 429 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------VGF--VN 429 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------ccE--EE
Confidence 877654321 237899999999999999999999999999987 23333322 223 44
Q ss_pred EEEEecCCCCEEEE-EeCCCeEEEEeC
Q 006126 607 VIAAHPLEPNRIAL-GLTNGRVHVIEP 632 (660)
Q Consensus 607 ~v~~sp~d~~~l~s-~s~Dg~v~iw~~ 632 (660)
+++|++ +|+++++ .+....+-=|-.
T Consensus 430 sl~f~~-sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 430 SLAFSN-SGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEEcc-CCCEEEEecccccccceeeE
Confidence 999999 7885554 445444444443
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-26 Score=209.98 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=233.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
||.++||.++-......+.+++.|.+.+||.++++.+ +..+. ||.+.|++++|+ +
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------L~~Y~--GH~GSVNsikfh~s~ 202 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------LATYT--GHTGSVNSIKFHNSG 202 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------eeeec--ccccceeeEEecccc
Confidence 4999999999988888899999999999998877765 22222 899999999999 7
Q ss_pred CEEEEEe-CCcEEEEEC------CC------------------------------C----eEEEEEcCCCCCeEEEEEcC
Q 006126 387 SHLFSAS-GGKISIFSL------ET------------------------------F----QTLATFANPPPIATYFILLP 425 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~v~~sp 425 (660)
.++++++ |++..||.. .. + .++..+.+|...|.+..|-.
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 7888998 999999962 11 0 13445678999999999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 504 (660)
.| .+++++.|.+..+||+++|..+..+.||....+.+.-+|..+++++.+.|.+.++||++.. -..+. ++.||.
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VFQGHt 357 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VFQGHT 357 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-eecccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999862 23344 788999
Q ss_pred CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 505 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 505 ~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
..|+++.|..+.+.+..+.|.+|++||+++.+ ++.++.. ..+++.++.+..+..|+.--.+..|++||++..+
T Consensus 358 ---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 358 ---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 79999999988765555789999999999764 5667754 7889999999999999999999999999998654
Q ss_pred eEEEeecccccCCCCcCcccceEEEEEecCCC--CEEEEEeCCCeEEEEeCCCC
Q 006126 584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~--~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+..++. ....|| ... +.|++|.. +. .-|++||-|..+.=|++...
T Consensus 432 -laRlPr--tsRqgH-rRM--V~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 432 -LARLPR--TSRQGH-RRM--VTCCAWLE-EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -cccCCc--cccccc-cee--eeeeeccc-cCcccccccccccceeeeeEeccc
Confidence 333331 122355 222 55999975 32 34889999999999998764
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=215.32 Aligned_cols=272 Identities=14% Similarity=0.195 Sum_probs=223.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
....|....+++|+.|.++.++|... .++... +++ |...|+.+.|+|+...+++++.|..|+||.......
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s----~q~l~~-~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-- 295 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPS----NQILAT-LKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-- 295 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecch----hhhhhh-ccC--cceEEEEEEeccchhheeecCCcceEEeeccccccC--
Confidence 35566667899999999999999873 444432 554 999999999999999999999999999998654432
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFI 422 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~ 422 (660)
.... ..|..+|+.+..+ |+||++++ ||+..+.|+++|.++..... ..-.+++.+
T Consensus 296 ----------------~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 296 ----------------PTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ----------------cccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 1111 1599999999999 99999999 89999999999998877654 334579999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
|+||| .|.+|..|+.|++||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||+|.-+. ++++..
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt~~l 429 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKTIQL 429 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----cceeec
Confidence 99999 999999999999999999999999999999999999999999999999999999999998543 232222
Q ss_pred ccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 502 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
... ..+.++.|.+.|.+|+. |.|=.|++++-.+. .++..+ ..|.+..+.+.|....+++++++.|..++++.
T Consensus 430 ~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 430 DEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEee
Confidence 222 36999999999999999 56667777774443 344444 34678899999999999999999999988876
Q ss_pred C
Q 006126 579 T 579 (660)
Q Consensus 579 ~ 579 (660)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=215.43 Aligned_cols=278 Identities=12% Similarity=0.096 Sum_probs=230.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
...+.++...|....+++|+.|..+.++|...++ ++..+. ||...|+.+.++ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------~l~~~~--Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------ILATLK--GHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh---------------------hhhhcc--CcceEEEEEEeccchhh
Confidence 4578888888887889999999999887765554 333222 899999999999 667
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEE
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 464 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~ 464 (660)
+++++ |..|++|.............|..+|+.+..+|.| +|++++.|++..+.|+++|.++..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 78888 9999999998888888888999999999999999 999999999999999999998877654 2345899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 543 (660)
+|||..|.+|+.||.+++||+.++. .+. .+.+|. ++|..++|+.+|.+|++ +.|+.|++||++..+..++
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999854 222 466788 89999999999999999 5888899999999988888
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC--CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
+.... ...+.+++|++.|.+|+.++.|=.|++++-.+ ...+..+..+ .+. .+++.|.. +..+++++
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--------sg~--st~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--------SGL--STGVRFGE-HAQYLAST 494 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--------ccc--cceeeecc-cceEEeec
Confidence 87753 55899999999999999998887777777544 3344443322 222 33889988 78999999
Q ss_pred eCCCeEEEEeC
Q 006126 622 LTNGRVHVIEP 632 (660)
Q Consensus 622 s~Dg~v~iw~~ 632 (660)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999998864
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=218.89 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=212.8
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCccee-----------eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-----------TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 337 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v 337 (660)
.++||+++.++++.+|+|.=|+...++....+. ....+..+|...|.+++.|+||+|||+|+.|..|.|
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~I 228 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQI 228 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEE
Confidence 899999999999999999999998654321111 111111268999999999999999999999999999
Q ss_pred EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126 338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~ 414 (660)
|+.++.+. ++.+. +|.+.|.+++|. .+.+++++ |..|++|+++....+.++-+|
T Consensus 229 w~~~t~eh---------------------v~~~~--ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 229 WDCDTLEH---------------------VKVFK--GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred ecCcccch---------------------hhccc--ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 88776653 22111 799999999999 55788888 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 493 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~ 493 (660)
...|..+....-+ .+-+|+.|+++++|++. .+....+.+|.+.+-|++|-. ...+++|+.||.|.+|++...+.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkpl-- 361 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPL-- 361 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCce--
Confidence 9999999888877 77777799999999994 445567888999999999975 457899999999999999884433
Q ss_pred eeeeeeeeccCCC--------CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC----ceeeeecCCCCCCCeEEEEEcc
Q 006126 494 KFLHSFQTGLVPE--------TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 494 ~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
.+....|.-. ..+|++++..|....+++| .+|.|++|-+.++ .++..+. -.+.|++++|++
T Consensus 362 ---f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 362 ---FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSN 435 (479)
T ss_pred ---eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEcc
Confidence 2222222110 1389999999999999994 8999999999877 3444443 378899999999
Q ss_pred CCCEEEEEe
Q 006126 561 DGKCIYVSC 569 (660)
Q Consensus 561 dg~~l~sg~ 569 (660)
+|+++++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999777663
No 98
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.4e-25 Score=233.01 Aligned_cols=223 Identities=14% Similarity=0.150 Sum_probs=176.7
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc--------eeeEeeccCCCeEEEE
Q 006126 394 GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLA 463 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~--------~~~~~~~~~~~v~~l~ 463 (660)
++.|++|+..+...+..+.+|...|.+++|+|+ + +|++|+.|++|++||+.++. .+..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 688999999888888899999999999999997 5 99999999999999997642 3446788999999999
Q ss_pred EeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee
Q 006126 464 YSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 541 (660)
Q Consensus 464 ~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~ 541 (660)
|+|++.. +++++.|++|++||+++++.. ..+ . |. ..|.+++|+|+|.+|++ +.|+.|+|||+++++.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~-----~~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRA-----FQI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEE-----EEE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9998876 578999999999999986532 111 1 22 47999999999999998 58999999999999998
Q ss_pred eeecCCCCCCCeE-----EEEEccCCCEEEEEecCC----eEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126 542 SQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAH 611 (660)
Q Consensus 542 ~~~~~~~~~~~v~-----~~~~s~dg~~l~sg~~dg----~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 611 (660)
.++.. |.+.+. ...|++++.+|++++.|+ .|+|||+++ ++++..+.. +....++...|.
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l---------d~~~~~L~p~~D 271 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI---------DNASAPLIPHYD 271 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe---------cCCccceEEeee
Confidence 88865 454432 234568999999988774 799999995 555555432 111222234555
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 612 PLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++++.++++|+.|++|++|++..+..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCcE
Confidence 65789999999999999999987643
No 99
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.6e-24 Score=228.90 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=169.8
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe--------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEE
Q 006126 374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 439 (660)
Q Consensus 374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~--------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~ 439 (660)
+|.+.|.+++|+ +.+|++|+ ||+|++||+.++. ++..+.+|...|.+++|+|++ .+++++.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57999999 9999999997642 344677899999999999998 567999999999
Q ss_pred EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE-----EE
Q 006126 440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-----IQ 514 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~ 514 (660)
+||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.. . ...+|. +.+.+ ..
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-----~-tl~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-----S-SFHIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----E-EEeccc---CCceeEEEEeee
Confidence 99999998877776 6678999999999999999999999999999996533 2 244565 33322 34
Q ss_pred EecCCcEEEE-Eec----CcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 515 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 515 ~sp~~~~l~~-~~d----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
|++++.++++ |.+ ++|+|||+++ ++++..+..+.+.+.+......++|.++++|+.|+.|++|++..+.. ..+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 5689888888 655 3799999985 56666654433334444444456789999999999999999987743 222
Q ss_pred ecccccCCCCcCcccceEEEEEecC
Q 006126 589 NLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 589 ~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
.. .++..+.. +++|.|+
T Consensus 301 ~~------~~s~~p~~--g~~f~Pk 317 (568)
T PTZ00420 301 NE------YKSCSPFR--SFGFLPK 317 (568)
T ss_pred cc------cccCCCcc--ceEEccc
Confidence 21 11234455 7899994
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=204.13 Aligned_cols=303 Identities=15% Similarity=0.149 Sum_probs=221.8
Q ss_pred cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
+.+++||.+ |..+ +||.||++||+++.|++|++|++.+-. ...++....++ -+..+.++|+||
T Consensus 79 ~~~LKgH~~~vt~~-----------~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapD 143 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDV-----------AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPD 143 (420)
T ss_pred hhhhhccCCceeee-----------EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCC
Confidence 345788887 5555 999999999999999999999997521 11233333333 236788999999
Q ss_pred CCEEEEEE-CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126 323 GDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 398 (660)
Q Consensus 323 g~~l~s~s-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~ 398 (660)
-+-++... ...++++|.+...+. ........-||.- .+.+.|.-.+..+... +.+|++++ |..|.
T Consensus 144 c~s~vv~~~~g~~l~vyk~~K~~d----G~~~~~~v~~D~~-------~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 144 CKSVVVSVKRGNKLCVYKLVKKTD----GSGSHHFVHIDNL-------EFERKHQVDIINIGIAGNAKYIMSASLDTKIC 212 (420)
T ss_pred cceEEEEEccCCEEEEEEeeeccc----CCCCccccccccc-------ccchhcccceEEEeecCCceEEEEecCCCcEE
Confidence 87555544 456888887654321 1112222233311 0222466667776666 77999999 99999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---CC-----ceeeEeeccCCCeEEEEEeCCCC
Q 006126 399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~---~~-----~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
+|++. |+.+..+......-+..+.+|+| .+++++.--.|++|.+- .| ..+..++||...|..++|+++.+
T Consensus 213 lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 213 LWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 99999 99999988777777889999999 99999999999999863 22 23456789999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec----cCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec
Q 006126 470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~ 545 (660)
.+++.+.||++++||+.-.-.... ....+..+ |.. .+....++++|+|..|+.+....+++|..++|+....+.
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~q-Dpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQ-DPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCC-CchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH
Confidence 999999999999999864211110 00101111 110 134458999999999999988999999999988776665
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
. .|...|.+++|+++|+++++++ |..++++.
T Consensus 370 ~-~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 D-IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred H-hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 4 4799999999999999999986 56777765
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=9.7e-24 Score=207.12 Aligned_cols=347 Identities=15% Similarity=0.191 Sum_probs=252.6
Q ss_pred cccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCC--------cEEEEeccCcCCCcceeeeecCCCCCCCCeE
Q 006126 245 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLE--------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV 315 (660)
Q Consensus 245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~ 315 (660)
-+.|-||.. +.++ ..+||.-.+++|...| .++|||..+ -..+.. + + .....|.
T Consensus 97 Qr~y~GH~ddikc~-----------~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~---L~TL~V--~-g-~f~~GV~ 158 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCM-----------AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVT---LSTLHV--I-G-FFDRGVT 158 (626)
T ss_pred cccccCCCCceEEE-----------eecCCceeeccCcccccCCCcCCCeeeeccccc---ceeeee--e-c-cccccce
Confidence 345666665 4444 7889888888876665 389999653 122222 1 2 2467899
Q ss_pred EEEEec--CCCEEEEEEC--CCcEEEEeccCCceeee-e--------------------eccceeEEEecCCCCceeeec
Q 006126 316 RLIYSH--SGDFLVALTQ--TATHKLWKWQSNKQSLE-E--------------------ENVNMESQLYQPSSKLVMTND 370 (660)
Q Consensus 316 ~~~~sp--dg~~l~s~s~--dg~i~vw~~~~~~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~ 370 (660)
|++||+ .|.+|+.... +..+.|||++.+..... . ......+..|+..++.+.+..
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~ 238 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ 238 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence 999998 3556655543 56789999987654322 0 111123467888777654422
Q ss_pred --ccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC
Q 006126 371 --IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 371 --~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~ 446 (660)
+....+..|.|++|. +.-+++|. +|.|.||+..+.+..+....|++.|.+++.-.+|.|++|+.|+.|..||-.-.
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR 318 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc
Confidence 222234679999999 77888888 99999999988888777779999999999999997777999999999983210
Q ss_pred c----------------------------------------eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126 447 K----------------------------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486 (660)
Q Consensus 447 ~----------------------------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~ 486 (660)
+ ......+|....+.++.+|+...+++++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 0 0012246777888999999999999999999999999
Q ss_pred CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126 487 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
..+..-.+.+ + .++.++.|+|.| .+++| ..|...+.|.++...+..-.. ..+++.++|+|+|.+|
T Consensus 397 ~~k~~wt~~~-----~-----d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 397 DHKLEWTKII-----E-----DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFL 462 (626)
T ss_pred CCceeEEEEe-----c-----CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec---CCceEEEEEcCCCCEE
Confidence 2112111111 1 578899999999 77775 889999999988665544332 8899999999999999
Q ss_pred EEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 566 YVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 566 ~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
|.|+.|+.|+||-+..+.. ...... ++.. .++.+.|++ |++++.+-+-|-.|..|+....
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k-------~~gs--~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGK-------CSGS--PITHLDWSS-DSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeee-------ecCc--eeEEeeecC-CCceEEeccCceEEEEEccccC
Confidence 9999999999999876443 333321 1133 355999999 8999999999999999966544
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=207.36 Aligned_cols=290 Identities=16% Similarity=0.196 Sum_probs=221.3
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc------CCceeee
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ------SNKQSLE 348 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~------~~~~~~~ 348 (660)
..+.+++.|.+.+||.++ .+.|... + .||.+.|.+++|++.+..+++++.|++..||... .+.....
T Consensus 161 pi~gtASADhTA~iWs~E----sg~CL~~-Y--~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLE----SGACLAT-Y--TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred cceeecccccceeEEeec----cccceee-e--cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCC
Confidence 477899999999999998 4666632 3 5699999999999999999999999999999832 1110000
Q ss_pred ------eeccceeEEEec---CCCCceee--ecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126 349 ------EENVNMESQLYQ---PSSKLVMT--NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 349 ------~~~~~~~~~~~~---~~~~~~~~--~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~ 414 (660)
....+....--| ...+..++ .....+|...|.+..|- |+.+++++ |.+..+||+++|+.+..+.+|
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH 313 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH 313 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence 000000000001 00111111 11112799999999998 88999999 999999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
....+.++-+|.. ++++.+.|.+.++||++.. ..+..|.||...|+++.|..+ ..+++|+.|.+|++||+++-
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNM---- 388 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNM---- 388 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccc----
Confidence 9999999999999 9999999999999999843 456789999999999999875 46889999999999999983
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEccCC--CEEE
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KCIY 566 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~dg--~~l~ 566 (660)
..++.++... ++++.++.+..+..|+.- .+..|++||+. |..+..+. ...|...|+|++|..+. .-|+
T Consensus 389 RsplATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf 462 (481)
T KOG0300|consen 389 RSPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF 462 (481)
T ss_pred cCcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccc
Confidence 2344434333 679999999988899885 66789999995 54444443 22478899999998443 4577
Q ss_pred EEecCCeEEEEECCCC
Q 006126 567 VSCKSGHVKVFDTSTL 582 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~ 582 (660)
+++-|..+.-|++...
T Consensus 463 tcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 463 TCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccceeeeeEeccc
Confidence 8889999999998764
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=228.41 Aligned_cols=283 Identities=18% Similarity=0.218 Sum_probs=224.6
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCE
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 388 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 388 (660)
.|+.+-+.++|.|+|++|++++.||.|++|+...... ....+. .+...|.+++-.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccCceeEEEeecccc
Confidence 3899999999999999999999999999998654421 111111 266778888877668
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 466 (660)
|++|+ +++|.+|.+..++.-..+....-++++++++.+| +++.|+.|-.|++.++.+......+++|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 88888 9999999999888776666777889999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC-CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
++.+|++.+.||.|++||+.++...... ..+....... ...+..++|+|+|..+++ +.|+.|++|+.........+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl--~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTL--TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhc--ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 9999999999999999999986543221 1111111100 145677999999666666 89999999999999998888
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
....+...+..++|+|+|+|||+++.||.|.|||+++-+. ..+ . -.+.+++|.| +.+.+-.-..-
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~--~~Vc~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------K--RAVCCEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------c--ceeEEEecCC-CCCeeEEEeec
Confidence 8876666699999999999999999999999999998332 111 1 2255899999 66665444444
Q ss_pred CeEEEE
Q 006126 625 GRVHVI 630 (660)
Q Consensus 625 g~v~iw 630 (660)
|+.-+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 444444
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-25 Score=213.95 Aligned_cols=271 Identities=15% Similarity=0.159 Sum_probs=216.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|||...+=......-.+.||+..+. ...+. +.. ....|.++.|-.||+.|++|+..|.|+|||.++..
T Consensus 32 l~fsp~~P~d~aVt~S~rvqly~~~~~---~~~k~--~sr--Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--- 101 (487)
T KOG0310|consen 32 LCFSPKHPYDFAVTSSVRVQLYSSVTR---SVRKT--FSR--FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--- 101 (487)
T ss_pred EecCCCCCCceEEecccEEEEEecchh---hhhhh--HHh--hccceeEEEeecCCeEEEccCCcCcEEEeccccHH---
Confidence 377776653333333456888887641 11111 111 47889999999999999999999999998844321
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
.+..+. +|+.+|..+.|+ +..+++|+ |+.+++||+.+......+.+|...|.|.+|
T Consensus 102 ------------------iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 102 ------------------ILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred ------------------HHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 111111 799999999999 66788888 789999999999886688999999999999
Q ss_pred cCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 424 LPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 424 sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
+|.. .+++|+.||.|++||+++. ..+..+. |..+|..+.+-|.|..+++++ ...+++||+.+|.. .+. ..
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q----ll~-~~ 234 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ----LLT-SM 234 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce----ehh-hh
Confidence 9976 8999999999999999987 5556665 999999999999999999877 56899999997642 222 23
Q ss_pred eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
..|. ..|+|+++..++..|++ |-|+.|++||+.+.+.+..+.. .++|.+++.+|+++.++.|..||.+.+-+.
T Consensus 235 ~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 3355 58999999999999999 6999999999988998888854 899999999999999999999998877654
Q ss_pred CC
Q 006126 580 ST 581 (660)
Q Consensus 580 ~~ 581 (660)
..
T Consensus 309 ~~ 310 (487)
T KOG0310|consen 309 EV 310 (487)
T ss_pred hc
Confidence 43
No 105
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=201.39 Aligned_cols=291 Identities=14% Similarity=0.111 Sum_probs=210.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
||.+.|++++|+.||++|++++.|++|++|+++.-.. +...+++.....+| .+.+.|.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nve~dh---pT~V~FapDc 144 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNVEYDH---PTRVVFAPDC 144 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccccCCC---ceEEEECCCc
Confidence 4999999999999999999999999999999865321 11122222221133 5667888
Q ss_pred CCEEEEEe-CCcEEEEECCC---CeEEEE--------E-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126 386 GSHLFSAS-GGKISIFSLET---FQTLAT--------F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~---~~~~~~--------~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
...++++. ..++++|.+.. |..... | +.|...+..+-...++ +|++++.|..|.+|+++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 33455555 67899997743 221111 1 1345566667777777 99999999999999998 999998
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 527 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d 527 (660)
+......-+..+.+|+|+++++++.--.|++|.+-- |+......+. -+.||. +.|..++|+|+.+.+++ +.|
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEEEecC
Confidence 887777778889999999999999999999998632 2221111222 356888 79999999999999999 899
Q ss_pred CcEEEEeCCC----C---ceeeeecC--CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCC
Q 006126 528 GQIDVYEAPT----L---NHTSQLVP--DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 598 (660)
Q Consensus 528 ~~i~iwd~~~----~---~~~~~~~~--~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh 598 (660)
|++++||+.- + +.+++... .........+.++|+|+.|+.+. ...+++|..++|+....+... |
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~------h 372 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI------H 372 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh------h
Confidence 9999999752 1 22222211 11133444899999999988764 457999999999877766531 2
Q ss_pred cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 599 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 599 ~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
...+. +++|+| +|++++|+| |..+++..-..|
T Consensus 373 -~~~Is--~is~~~-~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 373 -STTIS--SISYSS-DGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred -cCcee--eEEecC-CCcEEeeec-ceeeeeecCCCc
Confidence 34444 999999 899999997 678888874443
No 106
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=4.2e-24 Score=217.30 Aligned_cols=365 Identities=18% Similarity=0.199 Sum_probs=258.5
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCc---------------------cee
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---------------------ECR 301 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~ 301 (660)
.+..+.||.+ +.++-|. .+..+.-++|+++.|..||||.+.-..... .+.
T Consensus 183 ~v~el~GH~DWIrsl~f~--------~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFA--------RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred EEEEeeccchhhhhhhhh--------ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 4445678888 6665232 122244589999999999999886322111 000
Q ss_pred -eeecCC--CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee---------eecccee--------------
Q 006126 302 -TLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---------EENVNME-------------- 355 (660)
Q Consensus 302 -~~~l~~--~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~---------~~~~~~~-------------- 355 (660)
.+.++. .||.+.|.++.|+|.+..|+++|.|.++.+|......-.-. ..+..+.
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 011111 47999999999999999999999999999999776532110 1122222
Q ss_pred -----EEEecCCC-CceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEE
Q 006126 356 -----SQLYQPSS-KLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFI 422 (660)
Q Consensus 356 -----~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~ 422 (660)
.++|..+. ..........||.+.|..++|. |++|++++ |.+-++|-.-.. ..+..-+-|....+|++
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred cccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 24555222 2222223344899999999999 99999999 999999865411 12223346888899999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCC-------------------------------------------Cc-----------
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCT-------------------------------------------KK----------- 447 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~-------------------------------------------~~----------- 447 (660)
+-+.. .|++|.+.+.+++|+... |.
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 99867 999999999999997540 00
Q ss_pred ----------------------eeeEeeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeee
Q 006126 448 ----------------------TKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 448 ----------------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
.++++.||...|++++.+|+|+++++++.. ..|++|+..++.. .+ ..
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~-~L 568 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQ-EL 568 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hh-ee
Confidence 012456888999999999999999998864 3599999988543 22 45
Q ss_pred eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee-eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT-SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~-~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
.+|. -.|+.++|||||++|++ +.|+++.+|........ ..+. ...|..-|.++.|+|++.+++|++.|.+|++|
T Consensus 569 ~~Hs---LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 569 EGHS---LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred cccc---eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 6777 68999999999999999 89999999997543211 1110 23578999999999999999999999999999
Q ss_pred ECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC----EEEEEeCCCeEEEEeCC
Q 006126 578 DTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN----RIALGLTNGRVHVIEPL 633 (660)
Q Consensus 578 d~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~----~l~s~s~Dg~v~iw~~~ 633 (660)
..... +.+..+... .+ +.. +++++|.|.+.+ .++.|-..|.|.+|...
T Consensus 646 ~~~~~~d~~i~~~a~~-----~~-~~a--VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 646 EEPDLRDKYISRFACL-----KF-SLA--VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eccCchhhhhhhhchh-----cc-CCc--eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99887 433332211 11 233 448888876544 67888899999999965
No 107
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-23 Score=213.09 Aligned_cols=339 Identities=14% Similarity=0.104 Sum_probs=254.2
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC--CEEEEEECCCcEEEEeccCCcee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg--~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
...|-|.+++++..++.+.||+...+.++.... .++-...+. .|.++ ++|.. +.++.|+.+|.+.+|++.+++..
T Consensus 119 ~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~-~~~~~~~~~-~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v 195 (910)
T KOG1539|consen 119 LLLPFGEHLIAVDISNILFVWKTSSIQEELYLQ-STFLKVEGD-FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVV 195 (910)
T ss_pred EEeeecceEEEEEccCcEEEEEecccccccccc-ceeeeccCC-ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEE
Confidence 445778999999999999999998642221111 222211123 26666 45543 67899999999999998887752
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
+. .. ++...|+++.-+ =+.++.|. +|+|.+++++.++.+.+|+...+.|++++|
T Consensus 196 ------------~~---------f~--~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 196 ------------YT---------FQ--EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred ------------EE---------ec--ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 11 11 577888888888 67788888 999999999999999999877899999999
Q ss_pred cCCC--eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------
Q 006126 424 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL--------- 491 (660)
Q Consensus 424 sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~--------- 491 (660)
..|| .+++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=.+++...
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 9999 89999999999999999887776665 58788888888888888888888887777644322110
Q ss_pred --------e--------------------------------ce--------eee----------e---------------
Q 006126 492 --------C--------------------------------SK--------FLH----------S--------------- 498 (660)
Q Consensus 492 --------~--------------------------------~~--------~~~----------~--------------- 498 (660)
. .. ... .
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 0 00 000 0
Q ss_pred -eeeccC--------------------------CCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec-CCCC
Q 006126 499 -FQTGLV--------------------------PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-PDKM 549 (660)
Q Consensus 499 -~~~~~~--------------------------~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-~~~~ 549 (660)
+...|. +....+++++.++.|++.+.| ..|.|-+|++.+|-...++. ...|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 000000 001467889999999999986 88999999999998888873 2357
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc----------------------------------cC
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY----------------------------------AQ 595 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~----------------------------------~~ 595 (660)
..+|++++.+.-++.+++++.+|.+++||.....++..+..... ..
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 99999999999999999999999999999988775544432110 13
Q ss_pred CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 596 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.|| ++.++ +++||| ||++|++++.|++||+||+.++..
T Consensus 573 ~gh-~nrit--d~~FS~-DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 573 WGH-GNRIT--DMTFSP-DGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred hcc-cccee--eeEeCC-CCcEEEEeecCCcEEEEeccCcce
Confidence 455 44555 999999 899999999999999999999875
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.4e-24 Score=195.08 Aligned_cols=265 Identities=13% Similarity=0.099 Sum_probs=200.6
Q ss_pred eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+.||| ...+++.++.||+||+|+++. .+....... ..|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~---~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~- 106 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQN---SGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV- 106 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEec---CCcccchhh--hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-
Confidence 59999 455667999999999999986 223222112 22899999999999999999999999999999887753
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C--CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 421 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~--~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v 421 (660)
.+.- .|.++|.++.|- . ..|++|+ |++|+.||.+...++.++.-+ ..++++
T Consensus 107 --------------------~~v~---~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~ 162 (347)
T KOG0647|consen 107 --------------------SQVA---AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAA 162 (347)
T ss_pred --------------------eeee---ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeeh
Confidence 1111 599999999998 2 3689999 999999999998888877643 445554
Q ss_pred EEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 422 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 422 ~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
..-.. .++++..++.|.+|+++.+...... ..-+-.++|++..+|....+.|+.+|.+.+..+..+.....+.+
T Consensus 163 Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtF--- 238 (347)
T KOG0647|consen 163 DVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTF--- 238 (347)
T ss_pred hccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeE---
Confidence 43222 7888999999999999876433211 11345688999999888889999999999999988533222222
Q ss_pred eeccCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 500 QTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 500 ~~~~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
..|.. ....|++++|+|.-..|++ |.||++.+||-.....+.+... |..+|++.+|+.+|.+++.+.
T Consensus 239 -kCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 239 -KCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--HPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred -EEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--CCCccceeEecCCCCEEEEEe
Confidence 22220 0136788999998888888 8999999999877776666644 699999999999999887553
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.3e-24 Score=196.20 Aligned_cols=270 Identities=12% Similarity=0.106 Sum_probs=206.1
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
-.+.|.+++||| ...+++++|-||+|++|+++.... ..++... .|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----------------~~~ka~~-----~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----------------LVPKAQQ-----SHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc----------------ccchhhh-----ccCCCeEEEEEccCC
Confidence 478899999999 455666888899999999876422 0011111 599999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 462 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l 462 (660)
..+++|+ |+.+++||+.++ .+..+..|..+|.++.|-+.. .|++|+.|++|+.||++...++.++. -..+++++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8888888 999999999999 556677899999999998766 89999999999999999988888776 45667776
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH- 540 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~- 540 (660)
..- ...++++..++.|.+|+++.+....... . ..-. -.+++++..+|....+. +-+|.+.+..+..+.+
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~-~---SpLk---~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRI-E---SPLK---WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhhh-c---Cccc---ceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 553 4578889999999999998754321111 1 1111 46889999988877777 5899999988877632
Q ss_pred -eeeecCCCC-------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 541 -TSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 541 -~~~~~~~~~-------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
-.+++.+.. -..|.+++|+|.-..|++.+.||++.+||-.....+.....+ ..++. +.+|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--------~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--------PQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--------CCccc--eeEecC
Confidence 233333211 235778999999999999999999999998877666655432 55555 999999
Q ss_pred CCCCEEEEEe
Q 006126 613 LEPNRIALGL 622 (660)
Q Consensus 613 ~d~~~l~s~s 622 (660)
+|.++|-+.
T Consensus 304 -~G~ifaYA~ 312 (347)
T KOG0647|consen 304 -NGSIFAYAL 312 (347)
T ss_pred -CCCEEEEEe
Confidence 899988653
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.8e-25 Score=223.32 Aligned_cols=278 Identities=17% Similarity=0.205 Sum_probs=220.8
Q ss_pred EEEEe-cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126 316 RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 392 (660)
Q Consensus 316 ~~~~s-pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~ 392 (660)
.+..+ |.++||++||.||.|++|++........ ...... .+.|.+.|..+... ++.|+++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------~~~~as--me~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------TPYIAS--MEHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc---------------cchhhh--hhhhHhHHhhHHhhcCCCceEEe
Confidence 34444 5678899999999999999865533111 001111 12699999999988 7789999
Q ss_pred e-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEE-cCCC-eEEEEeCCCeEEEEeCCCCc--eee--------Eee-ccC
Q 006126 393 S-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TKA--------KLK-GHQ 456 (660)
Q Consensus 393 ~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~-sp~~-~l~s~~~d~~I~iwd~~~~~--~~~--------~~~-~~~ 456 (660)
+ |-+|++|+...+ -+..++..|..-|.|+++ -++. .+|+||-|+.|.+||++++. .+. .+. |+.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9 999999999887 678888999999999999 6777 99999999999999999872 222 223 788
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 535 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~ 535 (660)
..|++++.++.|..+++|+..+.+++||.++.+ +.++ ..||. ..|..+..++||+.+++ ++||+|++||+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimk--LrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMK--LRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEecccccc----ceee--eeccc---cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 899999999999999999999999999999954 2233 45998 68999999999999999 69999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe-eEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
...+++.++.. |...|+++..+|+-..+++|+.||.|+.=|+++.. .....+. ++++. .+..+..+
T Consensus 243 gqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---------daPv~--~l~~~~~~ 309 (735)
T KOG0308|consen 243 GQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---------DAPVL--KLHLHEHD 309 (735)
T ss_pred cccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---------CCchh--hhhhcccc
Confidence 99999999876 67779999999999999999999999999998843 2222221 44555 55555423
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 006126 615 PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~ 633 (660)
+-+-+++.|+.|+=|...
T Consensus 310 -~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 310 -NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred -CCceeeeccccceecCCc
Confidence 333556689999999865
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=9.7e-25 Score=213.68 Aligned_cols=279 Identities=15% Similarity=0.168 Sum_probs=222.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|..-|.++++|...+++.||+. |.|+|||+...... ..+..+-.-.....+.++... |+
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k------------------~PvsqLdcl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK------------------SPVSQLDCLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC------------------CccccccccCcccceeeeEecCCCc
Confidence 8888999999999999888875 88999998755321 111100000245667777777 88
Q ss_pred EEEEEe-CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.|++|+ -.++.|||+......- .+......+.+++.+||. ..+++..||.|.|||+.+...++.|.||...+.||.
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 899999 7899999998655433 333444566789999999 888999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~ 542 (660)
+++||..|.+|+-|.+||.||++++.......+. +.|.++..+|++.++++| .++.+.|......+ ..
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~skp~-ky 627 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KY 627 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCCcc-ce
Confidence 9999999999999999999999997644333333 689999999999999998 77888888874332 22
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
. .+.|...|.++.|.+.|+|+++.+.|+.+..|...-|..+...+- ... |+++..+- |.++++||+
T Consensus 628 q--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~Ss--VlsCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 628 Q--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSS--VLSCDISF-DDKYIVTGS 693 (705)
T ss_pred e--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCc--ceeeeecc-CceEEEecC
Confidence 2 345799999999999999999999999999999998876665442 333 45888888 789999999
Q ss_pred CCCeEEEEeC
Q 006126 623 TNGRVHVIEP 632 (660)
Q Consensus 623 ~Dg~v~iw~~ 632 (660)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888876
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=194.99 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=208.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
.+.|..+.|+|.+..|++++-||++++|++..... ... + .|..++.+++|. ...+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l---------------------~~~-~--~~~~plL~c~F~d~~~~ 68 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL---------------------KLK-F--KHGAPLLDCAFADESTI 68 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh---------------------hhh-e--ecCCceeeeeccCCceE
Confidence 67899999999999999999999999998766533 111 1 589999999999 7889
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
++|+ ||.|+.+|+.++... .+..|..+|.|+..++-. .+++|+.|++|++||.+.......+.. ...|.++.. .
T Consensus 69 ~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~ 144 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--S 144 (323)
T ss_pred EEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--c
Confidence 9999 999999999987654 455799999999999877 999999999999999997555555553 347888766 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC----ceee
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHTS 542 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~----~~~~ 542 (660)
|+.|++|+.|..+.+||+++-.. +.+.....-. -.+.++++-|++.-.++ +-||.|.+=.+... +...
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred CCEEEEeecCceEEEEEcccccc----hhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 78999999999999999998432 2221111111 57889999998776666 69999888666544 2222
Q ss_pred eecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 543 QLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 543 ~~~~~~-------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
.|..+. --.+|.+++|+|-...+|||+.||.|.+||+.+.+.+..+.. .+..+..++|+. ||
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----------~~~SI~slsfs~-dG 286 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----------YETSISSLSFSM-DG 286 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----------CCCceEEEEecc-CC
Confidence 232211 135799999999999999999999999999999888877752 123355899999 89
Q ss_pred CEEEEEeC
Q 006126 616 NRIALGLT 623 (660)
Q Consensus 616 ~~l~s~s~ 623 (660)
..||+++.
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99999874
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-22 Score=205.28 Aligned_cols=364 Identities=14% Similarity=0.157 Sum_probs=262.1
Q ss_pred CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126 263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~ 342 (660)
.....++||.+.+.||.+-.||.|-||++. ..-+....+.+ +-...|.+++|++.|+ |.+.+.+|.|.-||+.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~----~~w~~~~vi~g-~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLS----NNWFLEPVIHG-PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHT 99 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccC----CCceeeEEEec-CCCCceeeEEEccCCe-EEeecCCceEEEEeccc
Confidence 344456999999999999999999999998 46666655655 2467899999996554 89999999999999998
Q ss_pred Cceeeee---------------------eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126 343 NKQSLEE---------------------ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 398 (660)
Q Consensus 343 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~ 398 (660)
.+..... ...++....++...+.+.........++.|.+++|+ +..|++|+ ||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 8765431 112222233444444433322222456899999999 67799999 99999
Q ss_pred EEECCCCeEEEEEc--------CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 399 IFSLETFQTLATFA--------NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 399 iwd~~~~~~~~~~~--------~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
+||+.++..+.... ....-|+++.+-.++.|++|..-|+|.+||...|..++.+..|...|.+++..+++.+
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 99999987766221 1333568888887889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeee----e-----ceeee--------------------------------------------
Q 006126 471 LVSSGADAQLCVWDAVGWKKL----C-----SKFLH-------------------------------------------- 497 (660)
Q Consensus 471 l~s~s~dg~i~vwd~~~~~~~----~-----~~~~~-------------------------------------------- 497 (660)
+++++.|+.|..|...+.... . ...++
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~ 339 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS 339 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceee
Confidence 999999999888766554210 0 00000
Q ss_pred -----------------------eeeeccC----------CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC-------
Q 006126 498 -----------------------SFQTGLV----------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT------- 537 (660)
Q Consensus 498 -----------------------~~~~~~~----------~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~------- 537 (660)
....|+. +....|.+.+.+|+|++++.+.=...++|.+..
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVI 419 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEE
Confidence 0000000 012457888999999999987544455554432
Q ss_pred -------------------------------------------CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 538 -------------------------------------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 538 -------------------------------------------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
.+.+..+........|..+..||+|+|||+.+.+|.|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 0000011111124678899999999999999999999
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce-eccCC
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV-EWGKL 642 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~-~w~~~ 642 (660)
.+|++++++....... -...++.++|+|.+.+.++.+..|+.|.=||+...+. +|+..
T Consensus 500 ~v~nl~~~~~~~l~~r----------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 500 FVYNLETLESHLLKVR----------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred EEEEcccceeecchhc----------cCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhc
Confidence 9999999876655431 1245669999987888999999999999999965543 56543
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=212.08 Aligned_cols=275 Identities=12% Similarity=0.088 Sum_probs=221.3
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
++.+|...+++++|+. |-|+|||+........+.+ |+...-.+.|.++..+|||+.|++|+.-.++.|||+......
T Consensus 424 AvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 3677888888888876 6799999986433333333 222224788999999999999999999999999998766541
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
.. . .+ ....-.+++++.+ .+..+++. ||.|.|||+.+...++.|++|...+.||.+
T Consensus 501 ik-------------------a-el-tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 501 IK-------------------A-EL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred hh-------------------h-hc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 11 0 00 0122346667777 44545555 999999999999999999999999999999
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
++|| .|.+|+-|.+|+.||+++++.+.... ..+.|.++.++|++.+++.|-.++.+.+......+. .. ..-
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---yq----lhl 631 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---YQ----LHL 631 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc---ee----ecc
Confidence 9999 99999999999999999987766544 567899999999999999999999998888766332 11 234
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
|. +.|.++.|.+.|+++++ |.|+-+..|...-|..+..... ..+|.++.+|.|.++|++|+.|..-.||.+
T Consensus 632 he---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 632 HE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 55 78999999999999999 8999999999988888776643 889999999999999999999988888865
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.1e-23 Score=191.29 Aligned_cols=235 Identities=16% Similarity=0.212 Sum_probs=189.1
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 386 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~ 386 (660)
+.|.+.|+++|.+ |.|+|+||.|-+|+|||+..... .|.++ .|.+.|+++.|. .
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll------~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------LGILL------SHAGSITALKFYPP 94 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------hccee------ccccceEEEEecCC
Confidence 4499999999985 88999999999999999876653 12222 599999999999 2
Q ss_pred ---CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 387 ---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 387 ---~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
..|++|+ ||.|.+|+.....++.++++|...|+.++++|.| +-++.+.|+.++.||+-.|+.-..+.- ....+.
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~ 173 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL 173 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence 3788998 9999999999999999999999999999999999 888999999999999998876655542 223445
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 540 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 540 (660)
+.|+|.|.+++.++. ..|-+|.+.+... +..+... ..+.++.|.. +..+++ +.|+.|.+||..+..+
T Consensus 174 v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-----~~~i~~~-----~r~l~~~~l~-~~~L~vG~d~~~i~~~D~ds~~~ 241 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGR-NKIDIYQLDNASV-----FREIENP-----KRILCATFLD-GSELLVGGDNEWISLKDTDSDTP 241 (362)
T ss_pred eEEcCCCCEEEEEec-cEEEEEecccHhH-----hhhhhcc-----ccceeeeecC-CceEEEecCCceEEEeccCCCcc
Confidence 899999998888775 4677898887332 2111111 3466777765 445555 6889999999998888
Q ss_pred eeeecCCCCCCCeEEEEE--ccCCCEEEEEecCCeEEEEECCCC
Q 006126 541 TSQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~--s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
...+.. |...|-++.+ .|++.+|++++.||.|+|||++..
T Consensus 242 ~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFLA--HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeeec--chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 877765 7899999885 378899999999999999999876
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.6e-22 Score=202.34 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=197.8
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccc
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
..+++++.|+.+++||..+ +..... +. +...+.+++|+|+|+.+ ++++.++.+.+||..+++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t----~~~~~~-~~---~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------- 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT----LEVTRT-FP---VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------- 65 (300)
T ss_pred cEEEEecCCCEEEEEECCC----CceEEE-EE---CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--------
Confidence 5678999999999999974 333221 22 23446789999999977 4566789999998766543
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 428 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~ 428 (660)
..... .+ ..+..++|+ ++.++++ . ++.|++||+.+++.+..+..+ ..+.+++|+|+| .
T Consensus 66 -------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 66 -------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI 128 (300)
T ss_pred -------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE
Confidence 11110 12 224567787 6666554 4 799999999998887777532 345789999999 8
Q ss_pred EEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 429 FAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 429 l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
+++++.++ .+.+||..+++...... ....+.++.|+|+|++++++ ..++.|++||+++++........ ....+..
T Consensus 129 l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~- 205 (300)
T TIGR03866 129 VVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHPE- 205 (300)
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-ccccccc-
Confidence 88877765 57788998887765543 23356788999999988655 46899999999987543322211 0010100
Q ss_pred CCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCe
Q 006126 507 TTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLE 583 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~ 583 (660)
......++|+|+++++++ +.++.+.+||+++++.+..+.. ...+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 013456889999998665 3567899999998887765532 4578899999999999886 458999999999999
Q ss_pred eEEEeec
Q 006126 584 LRCQINL 590 (660)
Q Consensus 584 ~~~~~~~ 590 (660)
.+..+..
T Consensus 283 ~~~~~~~ 289 (300)
T TIGR03866 283 VIKSIKV 289 (300)
T ss_pred EEEEEEc
Confidence 9888863
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=213.45 Aligned_cols=263 Identities=15% Similarity=0.183 Sum_probs=209.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEE-EEEec-CCCEEEEEECCCcEEEEeccCCceeee
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~-~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.-++..+++++.||++++|+-.+ ..-.....+. +|.+-|.+ ++|-+ ++-.+++|+.|+.|.+|...+...
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~---~~~l~~~~~~--~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P--- 93 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKG---KQYLETHAFE--GPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP--- 93 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccC---cccccceecc--cCcceeeccceeccccCcceEeecccceEEEEecCCCCc---
Confidence 34555899999999999999864 1222222232 36777776 77775 444599999999999987655432
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 426 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~ 426 (660)
+..+. +|+..|.|+... ...+++|+ |.++++|-.. ++...+++|...|++++.-|.
T Consensus 94 ------------------~~~Lk--gH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 94 ------------------LYTLK--GHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred ------------------hhhhh--ccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecCC
Confidence 22222 899999999977 55599999 9999999864 566668999999999999999
Q ss_pred CeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 427 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 427 ~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
+.+++|+.|++|++|.- ++.+++|.+|...|+.+++-+++ .+++++.||.|+.|++.. ..+. ...||+
T Consensus 152 ~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght-- 219 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT-- 219 (745)
T ss_pred CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc--
Confidence 99999999999999974 78999999999999999999865 578899999999999954 3333 456888
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 507 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+.+.++...+++..+++ |.|+++++|+.. .+.+.+..+ ...|+++++-++|+ |++|+.||.||||....
T Consensus 220 -n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 -NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 79999997777777777 799999999975 777777542 56899999888887 56778899999998763
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.6e-23 Score=192.50 Aligned_cols=300 Identities=16% Similarity=0.172 Sum_probs=220.7
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
|.+.|..+...+ .|+|+++|+.||.|.|||++........ . .+-+ ....+......+|.-.|..+.|.
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s---~---li~k--~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS---G---LIAK--HKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc---c---ceeh--eeeeccccCCccceeeeeeeEEeeec
Confidence 899999999988 6899999999999999999865421100 0 0000 00011111222788999999998
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~----~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
...+.+++ |.++++||..+.+....|+ .++.|.+-+++|-. ++++|..|-.|++.|+.+|..-+.+.||.+.|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 56777888 9999999999988877775 34567788888854 788899999999999999999999999999999
Q ss_pred EEEEeCCCCE-EEEEeCCCcEEEEEcCCCe-eee--------ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126 461 CLAYSLSLNV-LVSSGADAQLCVWDAVGWK-KLC--------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 529 (660)
Q Consensus 461 ~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~-~~~--------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~ 529 (660)
++.|+|...+ |++|+.||.|++||++... +.. ..++......|. +.+..++|+.++.++++ +.|..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCccc
Confidence 9999997765 7889999999999998641 100 011111123444 78999999999999999 79999
Q ss_pred EEEEeCCCCceeee-ecCCCCC---CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126 530 IDVYEAPTLNHTSQ-LVPDKMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 530 i~iwd~~~~~~~~~-~~~~~~~---~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
+++|+..+|+.... +....|+ ..-..+. +-+...++.--.++.+.++++-.|+.+..+.. | ... +
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-------h-~k~--i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-------H-LKR--I 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec-------c-cce--e
Confidence 99999988764221 1111111 1111122 33444555555568999999999999988873 3 333 4
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 606 LVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.|.++-| +-+...++..|+.|..|-+.
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEeecC-chhhhhccccCCcccccccc
Confidence 4889989 78889999999999999983
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.4e-24 Score=208.05 Aligned_cols=251 Identities=14% Similarity=0.238 Sum_probs=196.1
Q ss_pred CCCCeEEEEEecCCCE-EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 310 FGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~-l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
|.+.|+.+.+.|.... +|+.+..+.+.|||......... ..+.+...+...||...-++++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------------~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-------------ASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-------------ccccCCCceEEEeeccccccccccccc
Confidence 8999999999997754 55566689999999876543111 111111111112788888889999
Q ss_pred CCEEEEEe-CCcEEEEECCCCe-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC--CCceeeEee
Q 006126 386 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK 453 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~-------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~--~~~~~~~~~ 453 (660)
...|++++ |++|++||+.... ....+.+|...|..++|++-. .|++++.|+.+.|||++ +.++.+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 56788888 8999999997532 345677999999999999987 99999999999999999 556677788
Q ss_pred ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcE
Q 006126 454 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQI 530 (660)
Q Consensus 454 ~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i 530 (660)
+|.+.|+|++|+| ++..||+||.|++|.+||+|+-. .++. .+.+|. ..|..+.|+|....+++ |.|+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence 8999999999999 66778999999999999999843 4666 677888 69999999998766554 599999
Q ss_pred EEEeCCCCceee------------eecCCCCCCCeEEEEEccCCCE-EEEEecCCeEEEEECCC
Q 006126 531 DVYEAPTLNHTS------------QLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTST 581 (660)
Q Consensus 531 ~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~s~dg~~-l~sg~~dg~I~iwd~~~ 581 (660)
.+||+..-...+ .|.-.+|...|..+.|+|+..+ |++.++|+.+.||++..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999986422221 1333458999999999998875 56788899999999863
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-22 Score=204.07 Aligned_cols=288 Identities=17% Similarity=0.220 Sum_probs=227.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
..+|.++||+.+.+.||.+-.||.|.+|++..+-. ....+.++....|.+++|+ +..|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---------------------~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---------------------LEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCce---------------------eeEEEecCCCCceeeEEEccCCeE
Confidence 77999999999999999999999999998765432 2222333567789999999 8888
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEe
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYS 465 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s 465 (660)
++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.++.++...++... .+...+++|.+++|+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 8888 9999999999999999999999999999999999 99999999988888887765543 334456899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeee--eeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~ 542 (660)
|++..+++|+.||.|++||..++........+ ....+.. .-|.++.|-.++. |++| ..|+|.+||...+..++
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecCc-EEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999997654422221 1111111 4678888887664 4554 77999999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+.. |...|.+++..++++++++++.|+.|.-|...+++....... ..-++.+.+. +++..+ ..+++||
T Consensus 240 S~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----~r~~h~hdvr--s~av~~---~~l~sgG 308 (691)
T KOG2048|consen 240 SHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----RRDLHAHDVR--SMAVIE---NALISGG 308 (691)
T ss_pred hhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----cccCCcccce--eeeeec---ceEEecc
Confidence 8875 699999999999999999999999999998887754322221 1122255566 777766 3888999
Q ss_pred CCCeEEEEeCCC
Q 006126 623 TNGRVHVIEPLE 634 (660)
Q Consensus 623 ~Dg~v~iw~~~~ 634 (660)
.|.++.+-....
T Consensus 309 ~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 309 RDFTLAICSSRE 320 (691)
T ss_pred eeeEEEEccccc
Confidence 998888766544
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.2e-24 Score=190.54 Aligned_cols=245 Identities=17% Similarity=0.193 Sum_probs=195.6
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
.|.+-|..+...--|+.|||++.|++|+|+.+.++... .++..+ .||.++|+.++|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~L--~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAEL--TGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeEe--cCCCCCeeEEeecccc
Confidence 38999999988889999999999999999998766420 122222 2899999999998
Q ss_pred -CCEEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCC---ceeeEeecc
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKGH 455 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~---~~~~~~~~~ 455 (660)
|.+||+++ ||.|.||.-..|+-. .....|...|++++|.|.+ .|++++.||.|.|.+.++. ...+....|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 89999999 999999998887543 3455899999999999987 8999999999999987754 122344569
Q ss_pred CCCeEEEEEeCC---C-----------CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--
Q 006126 456 QNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-- 519 (660)
Q Consensus 456 ~~~v~~l~~sp~---~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-- 519 (660)
.-.|+++.|.|. | +.|++|+.|..|+||+..+++ -.+...+.+|. ..|+.++|.|.-
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVGL 221 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccCC
Confidence 999999999985 4 579999999999999998863 22333477898 799999999963
Q ss_pred --cEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 520 --IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 520 --~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.+|++ +.||++.||..+.. .-..++.. .....+.+++||..|+.|+.++.|+.|.+|.-..
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 56777 59999999987632 11122221 2367899999999999999999999999997553
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=2e-23 Score=210.58 Aligned_cols=294 Identities=15% Similarity=0.097 Sum_probs=210.1
Q ss_pred EEEEEecC---CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 315 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 315 ~~~~~spd---g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
.++.|++. ...|+.+..||.|.++|...... .++...+.... .|...|..+.|. ...|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk~~~---aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLKKPL---AHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhcccc---cccceeEeeccCCCceeE
Confidence 44667652 34678888899999999765543 12222222222 699999999999 4578
Q ss_pred EEEe-CCcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-----------------
Q 006126 390 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----------------- 447 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~--~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~----------------- 447 (660)
++++ |.++++||+++++++.. +.+|...|.+++|.|++ .|++|+.||.|.|||++-..
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 8888 99999999999998877 88999999999999998 99999999999999987321
Q ss_pred ----------eeeEeeccCCCeEE---EEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeece-eeeeee--eccCCCCCCe
Q 006126 448 ----------TKAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSK-FLHSFQ--TGLVPETTIV 510 (660)
Q Consensus 448 ----------~~~~~~~~~~~v~~---l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~-~~~~~~--~~~~~~~~~v 510 (660)
.+.....+...|.+ +.+..|...|++++. |+.|+|||++........ +.. .. .-|....-.+
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeee
Confidence 11122334455555 566778889999887 999999999984332111 111 00 0111111457
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126 511 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 511 ~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
.++.....|.+|.+ +.|+.|+.||+.+.. ++..+.+......-..-..+||+.++++|+.|...++|.+.+.+.--.
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 78888888999988 799999999998643 333333221122233456689999999999999999999988764333
Q ss_pred eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+.. || .+.+++|+|.|.+-.-++++++|-+++||++..+
T Consensus 355 ~l~------Gh---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL------GH---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh------Cc---ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 222 55 3446699999976667899999999999999665
No 123
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.9e-23 Score=223.73 Aligned_cols=259 Identities=15% Similarity=0.207 Sum_probs=205.9
Q ss_pred CCCCeEEEEEecCCCEEEEEE--CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCC
Q 006126 310 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 387 (660)
++..|.++..+|||..++||+ .||.+.||+.+.-..
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------------------------------------------ 49 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------------------------------------------ 49 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------------------------------------------
Confidence 566799999999999999999 799999998543211
Q ss_pred EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC------------------Cce
Q 006126 388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------------------KKT 448 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~------------------~~~ 448 (660)
....+|..-.+.+.++..|.+.|+|+.|+||| +||+|++|+.|.||.... .++
T Consensus 50 --------~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~ 121 (942)
T KOG0973|consen 50 --------EKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV 121 (942)
T ss_pred --------hhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence 00011111134556677899999999999999 999999999999998762 135
Q ss_pred eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126 449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 527 (660)
Q Consensus 449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d 527 (660)
+..+.+|.+.|..+.|+|++.+|++++.|++|.+||.++. ..+. ...+|. +.|-.+.|.|-|+|+++ +.|
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence 6788999999999999999999999999999999999994 2333 677888 79999999999999999 899
Q ss_pred CcEEEEeCCCCceeeeecCCC----CCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 528 GQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++|++|++.+....+.+..+- -...+..+.|||||++|++... -..+.|.+..+.+.-..+. ||+
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~ 265 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHS 265 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCC
Confidence 999999987766666665431 1456889999999999998533 2468899988887666665 664
Q ss_pred CcccceEEEEEecC-----C-------CC----EEEEEeCCCeEEEEeCCCCce
Q 006126 600 SLELYPLVIAAHPL-----E-------PN----RIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 600 ~~~v~~~~v~~sp~-----d-------~~----~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
. ++. +++|+|. . ++ .+|+||.|++|-||.....++
T Consensus 266 ~-p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 266 A-PVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred C-ceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 4 555 8999973 1 11 689999999999999876655
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=188.82 Aligned_cols=256 Identities=12% Similarity=0.097 Sum_probs=198.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~ 444 (660)
.|.+.|..+... |..|++++ |++|+|+.++.. +.+.++.+|.++|+.++|.. -| +|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 688888887777 99999999 999999999764 56788999999999999976 56 99999999999999987
Q ss_pred CCce--eeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--
Q 006126 445 TKKT--KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-- 518 (660)
Q Consensus 445 ~~~~--~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 518 (660)
+|+- ...+..|...|++++|.|. |-.|++++.||.|.+.+.++.- ......+...|. -.|++++|.|.
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~ 162 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA 162 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence 7743 3455679999999999985 5679999999999999998741 122223556777 58999999985
Q ss_pred -C-----------cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEEECCC
Q 006126 519 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 519 -~-----------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~iwd~~~ 581 (660)
| +.|++ |.|+.|+||+..++.-+..-...+|...|..++|.|.- .+|++++.||+|.||-...
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 4 55788 69999999999876543332234589999999999864 5899999999999998763
Q ss_pred CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
.......+...- -...++ .++||+ .|+.|+.++.|+.|.+|.-+ .+++|.....
T Consensus 243 e~e~wk~tll~~-----f~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke~-~~Gkw~~v~~ 296 (299)
T KOG1332|consen 243 EYEPWKKTLLEE-----FPDVVW--RVSWSL-SGNILAVSGGDNKVTLWKEN-VDGKWEEVGE 296 (299)
T ss_pred ccCccccccccc-----CCcceE--EEEEec-cccEEEEecCCcEEEEEEeC-CCCcEEEccc
Confidence 211111111000 033466 999999 79999999999999999865 3466765443
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.9e-23 Score=189.77 Aligned_cols=286 Identities=16% Similarity=0.160 Sum_probs=213.1
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126 314 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 391 (660)
Q Consensus 314 V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s 391 (660)
..|+.|++.|.+||.|..||.+.|||+.+... +.++ .+|..+|.+++|+ |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~l-----saH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARML-----SAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhhh-----hccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999866532 1111 1799999999999 999999
Q ss_pred Ee-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe-ec-----cCCCeEEE
Q 006126 392 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-KG-----HQNRITCL 462 (660)
Q Consensus 392 ~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~-~~-----~~~~v~~l 462 (660)
++ |..|.+||+..|.+++.+. ...+|+.+.|+|.. .+++.-.+..-.+-++..+ .+++ .. -.....+.
T Consensus 83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccc
Confidence 99 9999999999999888875 56789999999977 4444444444455555432 2221 11 11122334
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC---
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--- 538 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--- 538 (660)
.|.+.|+++++|...|.+-++|..+-+++....+.+ . ..|..+.++..|+.++. +.|..|+.|+++.-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 689999999999999999999999976655544441 1 46889999999999999 79999999998621
Q ss_pred ----ce--eeeecCCCCCCCeEEEEEccCCCEEEEEecC-CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126 539 ----NH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 611 (660)
Q Consensus 539 ----~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 611 (660)
++ .+.++.--....-.+++||.+|.|++.|+.- ..++||....|.+++.+. |..+.. ...|.|+
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~--l~DV~wh 302 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEE--LLDVNWH 302 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhh--eeecccc
Confidence 11 1111110113345578999999999988753 679999999999999987 432222 3489999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 612 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
| -...+++- ..|.|+||..... +.|+.++|.
T Consensus 303 p-~rp~i~si-~sg~v~iw~~~~~-enwsafAPd 333 (405)
T KOG1273|consen 303 P-VRPIIASI-ASGVVYIWAVVQV-ENWSAFAPD 333 (405)
T ss_pred c-ceeeeeec-cCCceEEEEeecc-cchhhcCch
Confidence 9 45667766 7899999998765 468888864
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.7e-21 Score=198.08 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=196.9
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 399 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~i 399 (660)
..+++++.|+.+.+||..+++. +.... ++ ..+.+++|+ +..+ ++++ ++.|++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV---------------------TRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQV 57 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce---------------------EEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEEE
Confidence 4678889999999998765543 11111 22 335678888 6666 4555 799999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 477 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 477 (660)
||..+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.+
T Consensus 58 ~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 58 IDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred EECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence 99999988877765443 4678999999 554 456789999999998887777753 3456889999999999998877
Q ss_pred C-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC---C--
Q 006126 478 A-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M-- 549 (660)
Q Consensus 478 g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~---~-- 549 (660)
+ .+..||.++++.... ...+ ..+..++|+|+|+++++ + .++.|++||+++++.+..+.... +
T Consensus 136 ~~~~~~~d~~~~~~~~~-----~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 136 TNMAHFIDTKTYEIVDN-----VLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE 205 (300)
T ss_pred CCeEEEEeCCCCeEEEE-----EEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc
Confidence 5 467789887543221 1222 24567999999998876 4 58999999999988776654211 1
Q ss_pred CCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE-eCCCeE
Q 006126 550 DLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGRV 627 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~-s~Dg~v 627 (660)
......++|+|++++++++ +.++.|.+||+.+++....+.. ...+. +++|+| ++++|+++ +.+|.|
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~--~~~~~~-~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRVW--QLAFTP-DEKYLLTTNGVSNDV 273 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCcc--eEEECC-CCCEEEEEcCCCCeE
Confidence 1224568899999986554 4567899999999887765431 22344 899999 89988876 568999
Q ss_pred EEEeCCCCceeccC
Q 006126 628 HVIEPLESEVEWGK 641 (660)
Q Consensus 628 ~iw~~~~~~~~w~~ 641 (660)
+|||+.+++.+...
T Consensus 274 ~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 274 SVIDVAALKVIKSI 287 (300)
T ss_pred EEEECCCCcEEEEE
Confidence 99999999875444
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=186.54 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=202.2
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|.+..|+.+++||++++||... ......++ |..++.+++|.++. .+++|+.||.|+.+|+.++...
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~---~~l~~~~~-----~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPA---NSLKLKFK-----HGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccc---hhhhhhee-----cCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce-
Confidence 58999999999999999999999985 22222222 89999999999855 4899999999999988766531
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
. .+.|..+|.|+.++ .+.+++|+ |++|++||.........+... ..|.++..+
T Consensus 89 ------------------~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~ 144 (323)
T KOG1036|consen 89 ------------------Q-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS 144 (323)
T ss_pred ------------------e-----eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc
Confidence 1 12699999999999 77888999 999999999875555555433 377777665
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 425 PQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 425 p~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
.+ .|++|+.|..|.+||+++....... ..-+-.+.|+++-|++.-.++++-||.|.+=.++..+....+... +..
T Consensus 145 g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya--FkC 221 (323)
T KOG1036|consen 145 GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA--FKC 221 (323)
T ss_pred CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee--EEe
Confidence 44 8999999999999999976443222 224567899999998888999999999988766664221111111 222
Q ss_pred cCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 503 LVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 503 ~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
|.. -..+|++++|+|-...+++ |.||.|.+||+.+.+.+..+.. ....|.+++|+.||..||+++.
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence 210 0147899999999889999 6999999999999888888754 2677999999999999999874
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2.7e-21 Score=190.11 Aligned_cols=345 Identities=12% Similarity=0.162 Sum_probs=244.6
Q ss_pred CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC-------
Q 006126 261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA------- 333 (660)
Q Consensus 261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg------- 333 (660)
...|....-+.|.|..+.....-+.+ ++.+ ...++. . .||+..|.|++.+||--.+++|-..|
T Consensus 64 G~dcR~Nly~lptgE~vyfvA~V~Vl--~n~e-----e~~Qr~-y--~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~ 133 (626)
T KOG2106|consen 64 GVDCRNNLYLLPTGELVYFVAAVGVL--YNWE-----ERSQRH-Y--LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQ 133 (626)
T ss_pred ceeeeceeEEccCccEEEEeccEEEE--Eeeh-----hhhccc-c--cCCCCceEEEeecCCceeeccCcccccCCCcCC
Confidence 33444445777888877766554444 4443 222222 1 35999999999999988888765544
Q ss_pred -cEEEEec------------cCCceeee-------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 334 -THKLWKW------------QSNKQSLE-------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 334 -~i~vw~~------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.+++||. +.+-.... ..+.+.-..+||=..+....... ..+..|....|+
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk--~sne~v~~a~FHPt 211 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK--TSNEVVFLATFHPT 211 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce--eccceEEEEEeccC
Confidence 5899992 22211000 11112222455543333221111 245667888898
Q ss_pred -CCEEEEEeCCcEEEEECCCCeEEEE---EcCC-CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 386 -GSHLFSASGGKISIFSLETFQTLAT---FANP-PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 386 -~~~l~s~~dg~I~iwd~~~~~~~~~---~~~~-~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
.+.+++++.|.+.+|+.+.+...++ |..+ ...|.|++|.++|.+++|..+|.|.||+..+.+..+....|.+.|.
T Consensus 212 d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 212 DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF 291 (626)
T ss_pred CCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence 6678888899999999998876654 3322 3678999999999899999999999999988777777679999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece-------eee----------------------------eeeeccCC
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-------FLH----------------------------SFQTGLVP 505 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~-------~~~----------------------------~~~~~~~~ 505 (660)
++....+|.+|- |+.|+.|..||-.- +..+.. .++ ....+|.
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~- 368 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG- 368 (626)
T ss_pred EEEEecCccEee-cCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-
Confidence 999999996555 99999999999321 111100 000 1123454
Q ss_pred CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126 506 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 506 ~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~ 584 (660)
.....++.+|+...+++ +.|+.+++|+ ..++.-+... ..++.++.|+|.| .++.|...|...+.|.++..+
T Consensus 369 --delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 369 --DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred --cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence 46778899999988988 6999999999 4555544433 6789999999999 999999999999999999766
Q ss_pred EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126 585 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 585 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
+..-.. +.++. +|+|+| +|.+||.|+.|+.|+||.+..+..++.
T Consensus 441 v~~~~d---------~~~ls--~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 441 VTIHTD---------NEQLS--VVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EEEEec---------CCceE--EEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 654331 33444 999999 899999999999999999987765543
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.1e-23 Score=200.91 Aligned_cols=244 Identities=13% Similarity=0.128 Sum_probs=193.6
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEE
Q 006126 386 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 462 (660)
Q Consensus 386 ~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l 462 (660)
+.+++++. ...+.+|.+..........--++.|.+++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 67888887 4689999997655444333456789999999999 88888899999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCC----eeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE-EecCcEEEEeC
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEA 535 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~-~~d~~i~iwd~ 535 (660)
.|+.||.++++|+.||.|.+|++..- ......++. .+.+|. -+|+++...+. ..++++ +.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987431 111234555 677887 68999888764 345666 79999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eE----EEeec---ccccCCCCcCcccceE
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQINL---TAYAQPGTISLELYPL 606 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~----~~~~~---~~~~~~gh~~~~v~~~ 606 (660)
..+..+.++.. ...+.+++++|-+..+++|+++|.|.+.++.... .. +.... ......||.+ ...++
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~IT 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAIT 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC-Cccee
Confidence 99999888865 7889999999999999999999999998876432 11 00000 0112336643 23355
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 607 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
|++.+- ||..|++|+.||+|.|||+.+.++.
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHHH
Confidence 888888 8999999999999999999988763
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=197.07 Aligned_cols=284 Identities=14% Similarity=0.199 Sum_probs=221.5
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
..++|.++.|+|.-+.|++++.||+++||.++.... ..++... -...+|.+.+|. |.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGH 270 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCc
Confidence 357899999999999999999999999998765432 2222222 245778899999 66
Q ss_pred -EEEEEe-CCcEEEEECCCCeEEEE--EcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 388 -HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 388 -~l~s~~-dg~I~iwd~~~~~~~~~--~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
.+++++ ....+.||+.+.+..+. ..++. ..+.....+|++ .|+..+..|.|.+....+++.+..++ ..+.|..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 777777 78999999998765443 22333 456778899999 99999999999999999999999887 5788999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT--- 537 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~--- 537 (660)
+.|+.|++.|++.+.+|.|.+||++... ++++...... -.-++++.+++|.++|+| ..|.|.|||..+
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 9999999999999999999999999953 3332222111 234568888999999996 668999999653
Q ss_pred ---CceeeeecCCCCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 538 ---LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 538 ---~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
.+++.++.. -...|+++.|++|++.||.++. +..+++-.+.+......++.. ...-| +++|++|+|
T Consensus 422 s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg------~vtc~aFSP 492 (514)
T KOG2055|consen 422 STNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVG------HVTCMAFSP 492 (514)
T ss_pred cCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCccc------ceEEEEecC
Confidence 344544432 2678999999999999987775 578999999988766666543 11112 366999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCC
Q 006126 613 LEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.+.+||.|..+|.|.+|++.
T Consensus 493 -~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 -NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCceEEeecCCCceeeEeec
Confidence 89999999999999999985
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.5e-23 Score=201.07 Aligned_cols=243 Identities=17% Similarity=0.223 Sum_probs=187.1
Q ss_pred CCCEEEEEeCCCcEEEEeccCcCCCccee-----eeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCcee
Q 006126 273 DADSAVCAKSLEKSVNLKLQLINEPSECR-----TLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+-..+|+++..+.+.|||........... .++|. ||...=.+++|++.. -+|++++.|++|++||+......
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 44567788889999999998532222111 12343 488878889999854 47899999999999998766431
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATY 420 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~ 420 (660)
+..........+|...|..++|+ ...+++++ |+.+.|||++ +.++.....+|...|+|
T Consensus 214 ----------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 214 ----------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred ----------------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 11111111112799999999999 66788888 8999999999 56666777899999999
Q ss_pred EEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeec---
Q 006126 421 FILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS--- 493 (660)
Q Consensus 421 v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~--- 493 (660)
++|+|-+ .||+|+.|++|.+||+++- +++.++.+|...|.++.|+|+ ...|++++.|+.+.+||+........
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 9999977 9999999999999999874 578899999999999999995 56789999999999999976322110
Q ss_pred ---ee--eeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC
Q 006126 494 ---KF--LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP 536 (660)
Q Consensus 494 ---~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~ 536 (660)
.+ +--+-.||. +.|..+.|+|+..+++++ .|+.+.||.+.
T Consensus 358 a~dgppEllF~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hccCCcceeEEecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 01 111346777 799999999999998873 88999999985
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=194.92 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=221.2
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEeccC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQS 342 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~ 342 (660)
....+.|+|....+++|+.|++++||-+.+...+ .++.+.| -..+|.+++|.|+|. .+++++....+..||+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 3344699999999999999999999999864433 4555545 367999999999998 888888889999998876
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 418 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v 418 (660)
.+.... ....++. ..+..+..+ +++|+..+ .|.|.+....+++.+.+++ -.+.|
T Consensus 290 ak~~k~---------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v 347 (514)
T KOG2055|consen 290 AKVTKL---------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVV 347 (514)
T ss_pred cccccc---------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEE
Confidence 654111 0111222 345556666 88999988 8999999999999988875 35678
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe--EEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eece
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSK 494 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~ 494 (660)
..++|+.|+ .|++++.+|.|++||+++..+++.+.. .+.| ++++.++++.+|++|+..|.|.|||..+... ...+
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 899999999 888888999999999999999998864 3334 4566778999999999999999999766211 1122
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEec
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
++.++ ..-. ..|+++.|+||++.|+. + .+..+++-.+.+......++... .-+.|+|++|||.|.++|.|..
T Consensus 427 Pik~~-dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 427 PIKTV-DNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred chhhh-hhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 33311 1112 57999999999999987 3 67889999998877766665432 2467999999999999999999
Q ss_pred CCeEEEEECC
Q 006126 571 SGHVKVFDTS 580 (660)
Q Consensus 571 dg~I~iwd~~ 580 (660)
+|.|.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999875
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=4.5e-22 Score=202.68 Aligned_cols=335 Identities=14% Similarity=0.151 Sum_probs=242.9
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
..|+|++..+++-+..|..++|..++ .....+.... .||.+.|..++|+|.|+||++.|.|.+-++|-.-..+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d---~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-- 395 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKD---KTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-- 395 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccC---ccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeeccccccc--
Confidence 48999999999999999999999443 3444443233 57999999999999999999999999999875432211
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--------------------
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-------------------- 404 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~-------------------- 404 (660)
-|..-.. +.-|....+|+++- ...+++|. ...+++|+...
T Consensus 396 ----------~wHEiaR-------PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 396 ----------EWHEIAR-------PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ----------ceeeecc-------cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 1321111 11377788888888 34566666 46778886521
Q ss_pred -----------------------CeE----E-----------------------------EEEcCCCCCeEEEEEcCCC-
Q 006126 405 -----------------------FQT----L-----------------------------ATFANPPPIATYFILLPQD- 427 (660)
Q Consensus 405 -----------------------~~~----~-----------------------------~~~~~~~~~v~~v~~sp~~- 427 (660)
|.. . ..+.+|...|.+++.+|++
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 000 0 1123578899999999999
Q ss_pred eEEEEeCCC-----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 428 LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 428 ~l~s~~~d~-----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
.+|+++... .|++|+..+...++.+.+|.-.|+.++|+|||++|++.+.|+++.+|........ ..... ....
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa-~~k~ 616 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFA-CLKA 616 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch-hhhhc-cccc
Confidence 999988654 6999999988888899999999999999999999999999999999998553221 11122 2456
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEcc-----CCCEEEEEecCCeE
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCKSGHV 574 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~-----dg~~l~sg~~dg~I 574 (660)
|. ..|.+..|+|++.++++ +.|.+|++|..... +.+..+....+...|+.++|.| .+..++.|-+.|.|
T Consensus 617 Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 617 HT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred cc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 66 58999999999999999 69999999999877 5555543345688999999975 23478889999999
Q ss_pred EEEECCCCee-----EEEeecccccCCCCcCcccceEEEEEecCC---------CCEEEEEeCCCeEEEEeCC
Q 006126 575 KVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLE---------PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 575 ~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d---------~~~l~s~s~Dg~v~iw~~~ 633 (660)
.+|....-.. ...+.. .....+.+...|+ .+.|.|.. ...|++|++|.++||+++.
T Consensus 694 ~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 694 VLWRRKREHRQVTVGTFNLDT-RLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEEecccccccccceeeeecc-ccccccChHHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999652111 111111 0111121244455 89999852 2247999999999999875
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.1e-22 Score=182.74 Aligned_cols=278 Identities=14% Similarity=0.150 Sum_probs=206.3
Q ss_pred CCCEEEEEeCCCcEEEEeccCcCC--Ccce--eee----ecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCC
Q 006126 273 DADSAVCAKSLEKSVNLKLQLINE--PSEC--RTL----LLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~~--~~~~--~~~----~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~ 343 (660)
.|+++++|+.||.|.+||++...+ ..-+ +.. .--..+|.-.|..+.|-| |.-.+.+++.|.+++|||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 689999999999999999986431 1111 111 011145888999999999 5567888899999999998776
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 417 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~ 417 (660)
+... .+ ...+.|++-+++ ..++|+|. +-.|++-|+.+|.+-.++.+|...
T Consensus 135 Q~a~----------~F--------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 135 QEAV----------DF--------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred eeeE----------Ee--------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 5411 11 134456666666 34566666 789999999999999999999999
Q ss_pred eEEEEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEe--------------eccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 418 ATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKL--------------KGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
|.++.|+|.. .|++|+.||.|++||++.. .+...+ ..|.+.|++++|+.++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999999988 8999999999999999854 222222 3477889999999999999999999999
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 559 (660)
++|+..+|+..-..... ..|....+.-..+. +-+...++. -.++.+.++++-.+..++.+.. |...+.+.++-
T Consensus 271 r~wn~~~G~ntl~~~g~---~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~~~~ 344 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGP---IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCAAYR 344 (397)
T ss_pred EEeecccCccccccccc---ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEEeec
Confidence 99999987642211111 11110001111122 223333333 4679999999999999988876 58889999999
Q ss_pred cCCCEEEEEecCCeEEEEECC
Q 006126 560 CDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 560 ~dg~~l~sg~~dg~I~iwd~~ 580 (660)
|+-+...+|..|+.|+.|-..
T Consensus 345 ~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 345 PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred CchhhhhccccCCcccccccc
Confidence 999999999999999999873
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.5e-24 Score=219.79 Aligned_cols=229 Identities=14% Similarity=0.215 Sum_probs=201.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
.|...|.++..- ++.+++|+ |..+.+|.+.....+..+.+|..+|.++.|+++. .|++|+.+|+|++||++.++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 477888887766 78889998 8889999998888888899999999999999999 9999999999999999999999
Q ss_pred eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC
Q 006126 450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 528 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~ 528 (660)
+++.+|...+.++.|+|-+.+.++|+.|+.+++||++. ..+.+ .+.+|. ..+..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 99999999999999999999999999999999999986 23444 556676 678899999999999995 779
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
.++|||+..|+....|.. |...+..+.|+|..-.+++|+.|+.|++||+++.+.+....+. ...+. +.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~--~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVR--SL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCce--ee
Confidence 999999999999999865 6899999999999999999999999999999998887766532 23344 99
Q ss_pred EEecCCCCEEEEEeCC
Q 006126 609 AAHPLEPNRIALGLTN 624 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~D 624 (660)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 89888887655
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=196.04 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=189.0
Q ss_pred CCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 006126 323 GDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 398 (660)
Q Consensus 323 g~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~ 398 (660)
++|++++.. ...+.+|.+..... ..+.. --.++|.+++-+ |.+|+.|. .|.|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~--------------------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lY 106 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQ--------------------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLY 106 (476)
T ss_pred hhheeeecccCccccccccCchhh--------------------hhhhc---ccccceeeeecCCCceEEEeecccCcEE
Confidence 367777766 35788887765543 11111 245779999988 88888887 89999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---------CCceeeEeeccCCCeEEEEEeCC-
Q 006126 399 IFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLS- 467 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~---------~~~~~~~~~~~~~~v~~l~~sp~- 467 (660)
+|.+.+|..+..+..|-..|+|+.|+.|| +|++|+.||.|.+|++. +-++++.|..|.-+|+++...+.
T Consensus 107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 99999999999999999999999999999 99999999999999864 23567889999999999988764
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc------
Q 006126 468 -LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------ 539 (660)
Q Consensus 468 -~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~------ 539 (660)
..+++++|.|.++++||+..+..+...... ..+.+++++|-++.+++| .+|.|.+.++....
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSLGVLLLTITFP----------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred ccceEEEecCCceEEEEEeccceeeEEEecC----------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc
Confidence 468999999999999999997655443333 679999999999999995 89999998865322
Q ss_pred ----------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 540 ----------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 540 ----------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+..+.++.....|+|++++-||..|++|+.||.|.|||+.+.+++.++.
T Consensus 257 ~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred cccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 23344443223499999999999999999999999999999998887765
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=205.05 Aligned_cols=274 Identities=15% Similarity=0.163 Sum_probs=211.3
Q ss_pred ecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCc-CCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126 259 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 337 (660)
Q Consensus 259 ~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v 337 (660)
+........+.|.|+|++|++++.||.|++|+.... .++..+.. |...|.+++.. +.+|++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------~g~~v~~ia~~--s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------SGELVSSIACY--SNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------cCceeEEEeec--ccceEEeeccceEEE
Confidence 344444555699999999999999999999998753 22221111 46677776654 458999999999999
Q ss_pred EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC
Q 006126 338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~ 414 (660)
|.+..+.. +..+. ...-++++++|+ |+++|.|+ |-.|++.++.+....+.+++|
T Consensus 81 y~fps~~~------------------~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 81 YKFPSGEE------------------DTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred eeCCCCCc------------------cceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 98876653 11111 245678899999 78999999 789999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-------c-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------H-QNRITCLAYSLSLNVLVSSGADAQLCVWDA 485 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-------~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~ 485 (660)
..+|.++.|+|.+ .||+.+.||.|++||+.++.+..++.+ . ...+..++|+|+|..++..+.|+.|++|+.
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence 9999999999999 999999999999999999987776643 1 345667899999888888999999999999
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 564 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 564 (660)
.+++.... +. ...+. +.+..+.|+|+|+|||++ .+|.|.|||.++... +.....|++++|-|+++-
T Consensus 218 ~~we~~f~--Lr--~~~~s---s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 218 KGWELQFK--LR--DKLSS---SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred CCceehee--ec--ccccc---cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCe
Confidence 99765322 21 11222 458999999999999995 999999999987222 223778999999999876
Q ss_pred EEEEecCCeEEEE
Q 006126 565 IYVSCKSGHVKVF 577 (660)
Q Consensus 565 l~sg~~dg~I~iw 577 (660)
+-.-...|...+|
T Consensus 285 it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 285 ITLITALGTLGVS 297 (933)
T ss_pred eEEEeeccccccC
Confidence 6544444444333
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.9e-23 Score=211.05 Aligned_cols=282 Identities=13% Similarity=0.193 Sum_probs=209.9
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCC-CCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCcee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~-~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
...++-..++.++. ..++++.+........+... +... .-.-.+..+.|+. +.++|||++..|.|.+||+.....
T Consensus 46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r- 122 (839)
T KOG0269|consen 46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR- 122 (839)
T ss_pred eecCCcceeEEecc-cceeeEeeCcccCCcceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-
Confidence 55566666666654 34556655432222222211 1110 0012345577764 567999999999999999876311
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
...+. .+. .|...+.++.|+ ..+|++|+ ||+|++||++..+...++.+....|+.+.
T Consensus 123 -----------------nk~l~-~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 123 -----------------NKLLT-VFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred -----------------chhhh-Hhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 00111 111 599999999999 78999999 99999999999999999999999999999
Q ss_pred EcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 423 LLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
|+|.. .|+++.+.|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+......+.
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-- 261 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-- 261 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe--
Confidence 99976 9999999999999999864 566788899999999999999999999999999999999986543333333
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEcc-CCCEEEEEecCCe
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGH 573 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~ 573 (660)
.. .+|.++.|-|+..+.++ + .|-.|+|||++..-. ..++. .|...++.++|.. |...+.+++.||.
T Consensus 262 -Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 262 -TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred -ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccH
Confidence 22 57999999998776554 3 678999999976443 34443 4799999999964 5678889999998
Q ss_pred EEEEECCCC
Q 006126 574 VKVFDTSTL 582 (660)
Q Consensus 574 I~iwd~~~~ 582 (660)
|..-..+++
T Consensus 334 v~qh~~kna 342 (839)
T KOG0269|consen 334 VLQHLFKNA 342 (839)
T ss_pred HHHhhhhcc
Confidence 876666554
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.6e-23 Score=209.98 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=216.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 387 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~ 387 (660)
......+...++-..++.++. ..++|+.+........ ..+.. .+.. .-...+..|.|. .+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~-------~~~~~-k~kq--------n~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK-------CNHRF-KTKQ--------NKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcc-------eeeec-cccc--------ceeeehhhcccccchhh
Confidence 445677777788877777765 4566776655433111 11111 0000 111235567777 78
Q ss_pred EEEEEe-CCcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 388 HLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
+||+++ .|.|.+||+.. .+.+..|..|...++++.|++.. +|++|+.||+|++||++..+...++.+....|..
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 999999 89999999987 55666788999999999999988 9999999999999999999999999998999999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126 462 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~ 539 (660)
++|+| .+..++++...|.+.+||++... .+.. .+..|. ++|.++.|+|++.+||+ |.|+.|+|||+.+.+
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 99999 67889999999999999999853 3333 456787 79999999999999999 599999999997655
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCE-EEEEe--cCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~-l~sg~--~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
....... ....+|.++.|-|+..+ |++++ .|-.|+|||++.. -+..++. .| ...+ +.++|-..|.
T Consensus 254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH-~~~v--t~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EH-TDSV--TGIAWDSGDR 322 (839)
T ss_pred ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------cc-Cccc--cceeccCCCc
Confidence 4322222 13789999999998765 55444 3788999999754 2333333 22 3333 4889977677
Q ss_pred CEEEEEeCCCeEEEEeCCCC
Q 006126 616 NRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~ 635 (660)
..+.+++.||+|..-.+.++
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 88999999999876555543
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.4e-21 Score=182.64 Aligned_cols=293 Identities=14% Similarity=0.141 Sum_probs=208.5
Q ss_pred CCCCeEEEEEec----CC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126 310 FGGRVVRLIYSH----SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 310 h~~~V~~~~~sp----dg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
|..+|..++|++ +. +.++++| ...+.+|+...... + ..++.+..+.|....+.++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~----------i--------r~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG----------I--------RLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc----------e--------eeeeeccCCCCCcceEEEEE
Confidence 889999999985 22 3344444 45677776554321 0 12333333357888888999
Q ss_pred e------CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe---
Q 006126 385 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--- 452 (660)
Q Consensus 385 s------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~--- 452 (660)
+ +-++|.|+ -|.|+|.|+.++++...+.+|...|+.+.+.|+. ++++++.|.+|++|++++..++..+
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 8 33677777 8999999999999999999999999999999999 9999999999999999999999887
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-------------eeee---------eeeeccCCCCCCe
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS-------------KFLH---------SFQTGLVPETTIV 510 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~---------~~~~~~~~~~~~v 510 (660)
.+|.+.|.++.|+++|.++++++.|.++++|++...+.... .++. +...-|. ..|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV 254 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence 45999999999999999999999999999999985321110 0000 0011122 234
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeC-CCCceeeeecCC-----------CCCCCeEEE--EEccCCCEEEEEecCCeEE
Q 006126 511 NHIQFHPDQIHLLS-IHEGQIDVYEA-PTLNHTSQLVPD-----------KMDLPITYA--TYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 511 ~~~~~sp~~~~l~~-~~d~~i~iwd~-~~~~~~~~~~~~-----------~~~~~v~~~--~~s~dg~~l~sg~~dg~I~ 575 (660)
.|+.|- |.++++ +.++.|..|.. +-++.+...... -....|+-+ +|+|-+++||.|...|.|+
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 444444 577888 78889999987 212211111110 013344444 4567789999999999999
Q ss_pred EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+||++..+....-... ... + ...|. ..+|+. |+.+|+...+|++|.-||.-
T Consensus 333 vwdL~~~ep~~~ttl~-~s~-~--~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 333 VWDLDNNEPPKCTTLT-HSK-S--GSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEECCCCCCccCceEE-ecc-c--cceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999987663211111 000 1 33344 889999 89999999999999999853
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.3e-21 Score=177.38 Aligned_cols=254 Identities=12% Similarity=0.118 Sum_probs=185.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~ 443 (660)
+|.+-|.++.|. |+.+|+|+ |++|+|||..+ ..+....+.|.+.|..+.|.+-. .+|+++.|+++.||.=
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 799999999999 99999999 99999999643 34666778999999999997654 9999999999999974
Q ss_pred CC---------CceeeEeeccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------eeeccCC
Q 006126 444 CT---------KKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------FQTGLVP 505 (660)
Q Consensus 444 ~~---------~~~~~~~~~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~ 505 (660)
.. .....++....+.|+.+.|.| -|-.|++++.||.+|||+.-..-....-.++. .+..+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~- 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK- 169 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc-
Confidence 21 122345566778999999999 47789999999999999875532222221110 011122
Q ss_pred CCCCeEEEEEecC---CcEEEEEecC------cEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccC----CCEEEEEec
Q 006126 506 ETTIVNHIQFHPD---QIHLLSIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCD----GKCIYVSCK 570 (660)
Q Consensus 506 ~~~~v~~~~~sp~---~~~l~~~~d~------~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d----g~~l~sg~~ 570 (660)
....|+.|+|. ..+|++|.+. .+.||....+ +....-...+|..+|++++|.|+ -..||+++.
T Consensus 170 --~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 --QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred --CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 46778999974 4577777555 7889886543 22222222357999999999986 357999999
Q ss_pred CCeEEEEECCCC------------eeEEEeeccccc-CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 571 SGHVKVFDTSTL------------ELRCQINLTAYA-QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 571 dg~I~iwd~~~~------------~~~~~~~~~~~~-~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
|| |+||++... .....++..... ..+| ...++ .+.|+- .|..|++.|+||+||+|+..-.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceE--EEEEee-eeeEEeecCCCceeeehhhhhh
Confidence 99 999998731 112222222111 2244 66677 999999 7999999999999999997644
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-21 Score=191.81 Aligned_cols=294 Identities=16% Similarity=0.174 Sum_probs=216.8
Q ss_pred EEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEeccCCceeeeeeccce
Q 006126 277 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 277 l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s--~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
|..++...++++||+........+...+ ....+..+.|+.... |++++ .|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~----------- 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK----------- 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccce-EEEeecCCceeEEEecccCC-----------
Confidence 3345555679999998644333333322 244589999988764 55544 4778888863322
Q ss_pred eEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126 355 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 430 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~ 430 (660)
++++-.....++ ..-.|++.. ..++++|+ .+.|+|||++...+.+.++.|...|+++.++..+ +|+
T Consensus 68 --------~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 68 --------TPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred --------CCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 111111111111 233344443 67889999 8999999999888888899999999999999999 999
Q ss_pred EEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126 431 FGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 508 (660)
Q Consensus 431 s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 508 (660)
+++..|.|.|..+.++..-..|... ...|.-+.|+|..++ |.+++.+|.|.+||+... .++......|. .
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---A 209 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---A 209 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---C
Confidence 9999999999999999888888654 345668999997765 567889999999999873 33333556677 6
Q ss_pred CeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeE
Q 006126 509 IVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELR 585 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~ 585 (660)
+...++|+|....|++ |.|..|.+||....+....+.- ..+...++|+++|.+|+.|...|.|+.||++. ..++
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 8889999998776665 6999999999998877777754 77899999999999999999999999999986 4556
Q ss_pred EEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
.++..| +.. +++++|-| .. .+++
T Consensus 287 ~v~sah--------~~s--Vt~vafq~-s~-tvlt 309 (673)
T KOG4378|consen 287 AVRSAH--------DAS--VTRVAFQP-SP-TVLT 309 (673)
T ss_pred eEeeec--------ccc--eeEEEeee-cc-eeee
Confidence 666543 433 45999988 33 4443
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.4e-21 Score=194.18 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=205.4
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.||++.|.++...|.|.+|++|+.||+++||.+.++.+... . ...+.|.||+|+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~---~~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------V---QFDSEIRSVAWNPL 452 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------E---eecceeEEEEecCC
Confidence 45999999999999999999999999999999887766322 1 123345566665
Q ss_pred C--CEEEEEeC---------------------------------CcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCC
Q 006126 386 G--SHLFSASG---------------------------------GKISIFSLETF----QTLATFANPPPIATYFILLPQ 426 (660)
Q Consensus 386 ~--~~l~s~~d---------------------------------g~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~ 426 (660)
+ ..||++-+ +.+..|.-... .-++....|...|..+.|+..
T Consensus 453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 1 12333323 23344433210 112333467888999999999
Q ss_pred C-eEEEEeCCC---eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 427 D-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 427 ~-~l~s~~~d~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
| +|++...++ .|.|+++.......-|....+.|.++.|+|...+|++++ ...|++||+...+. ++.+..+
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel-----vKkL~tg 606 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL-----VKKLLTG 606 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH-----HHHHhcC
Confidence 9 888876544 799999988877777766778899999999998888876 57899999987432 3323333
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
- .+|.+++.+|.|..|++ +.|+.+..+|+.-. ++.+++. .|...+++++|++.-.++++|+.||.+.||.-.
T Consensus 607 ~----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 607 S----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred C----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 3 48999999999998888 59999999999754 4555554 378999999999999999999999999998632
Q ss_pred ------CCeeEEEeecccccCCCCcC-cccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 581 ------TLELRCQINLTAYAQPGTIS-LELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 581 ------~~~~~~~~~~~~~~~~gh~~-~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
..-++-.+ ....||.. +..-++.+.||| ...+|.++|.||+|++|
T Consensus 681 VY~Dl~qnpliVPl----K~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPL----KRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEee----eeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 11111111 12235532 234467889999 68899999999999998
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.9e-23 Score=212.12 Aligned_cols=252 Identities=18% Similarity=0.187 Sum_probs=211.7
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
+.+++....+-.+++||... +. .|...|.|+..-..++.+++|+.|..+-+|.+.....
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-----------~~--~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-------- 62 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-----------FV--AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-------- 62 (825)
T ss_pred ccccceeeeeeccccccchh-----------hh--hhhhhhceeeeeccceeeccCCCceeeccccccCCch--------
Confidence 34455566667788998763 11 1788999998878889999999999998887654322
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 429 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l 429 (660)
. +. + .+|..+|.++.|+ ..+|++|. +|+|++||++.++.++++.+|...+.++.|+|-+ ++
T Consensus 63 -------i-----~S-~--~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~ 127 (825)
T KOG0267|consen 63 -------I-----TS-L--TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF 127 (825)
T ss_pred -------h-----he-e--eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe
Confidence 1 11 1 1799999999999 55666677 8999999999999999999999999999999999 99
Q ss_pred EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 430 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 430 ~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
++|+.|+.+++||.+..-+.+.+.+|...|.++.|+|+|+++++++.|.++++||...|+.. . .+.+|. +.
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-----~-ef~~~e---~~ 198 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-----K-EFKSHE---GK 198 (825)
T ss_pred ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-----c-cccccc---cc
Confidence 99999999999999988899999999999999999999999999999999999999886533 2 345666 68
Q ss_pred eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126 510 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 510 v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
+.++.|+|..-.++. |.|+++++||+++.+.+..... ....|.+.+|+|++..+++|..+.
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEeeccCC--ccCCceeeeecCCceeeecCchhh
Confidence 999999998877877 5999999999998888777654 378899999999999999987654
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.3e-21 Score=187.70 Aligned_cols=292 Identities=17% Similarity=0.232 Sum_probs=210.9
Q ss_pred CCCCeEEEEEecCCC--EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 310 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~--~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
|..+|.+++|+|..+ .+|+|+.-|+|-+||+.+.... .++..+. ..|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f----~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLF----TPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEe----ccCCccccceEecCC
Confidence 789999999999764 6777888899999999643320 1111111 1699999999999
Q ss_pred -CCEEEEEe-CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCe
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQTLA--TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 459 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v 459 (660)
...+++.+ ||+|+.-|++.+.... ........+..+.|+.+. .++.+..=|...+||.+++.. ...+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45677777 9999999998764433 233345566788888888 777787777999999998755 56667788999
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-
Q 006126 460 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 536 (660)
Q Consensus 460 ~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~- 536 (660)
.+++++|.. .+|++++.|++.+|||++.-.......+. ...|. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999954 56899999999999999984332221133 23455 58999999998777887 899999999983
Q ss_pred ---CCceeeeecCC-CCCC--CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126 537 ---TLNHTSQLVPD-KMDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 537 ---~~~~~~~~~~~-~~~~--~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
...+..++.-. .+.. ......|.|+..++++|..-..|-|||-..++.+..+..+. ...|. ....|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-------~~tI~-~vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-------SSTIP-SVNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-------ccccc-cceee
Confidence 33333333211 0111 23467899999999999999999999999999887764221 11222 14689
Q ss_pred ecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126 611 HPLEPN-RIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 611 sp~d~~-~l~s~s~Dg~v~iw~~~~ 634 (660)
|| -+. +++.++.-|.|+||--..
T Consensus 473 HP-~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 473 HP-MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cc-cccceeccCCccceEEEEecCC
Confidence 99 455 455555678899886543
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=175.37 Aligned_cols=276 Identities=11% Similarity=0.043 Sum_probs=203.8
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|++.|.+||+|..||.|.|||+.+ ..... .+. +|..+|.+++||+||+.|+|+|.|..|.+||+..+..
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar-~ls--aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-- 99 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDT----FRIAR-MLS--AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-- 99 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccc----cchhh-hhh--ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--
Confidence 49999999999999999999999984 32222 143 3999999999999999999999999999998876653
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc-CC----CCCe
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NP----PPIA 418 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~----~~~v 418 (660)
++.. ....+|+.+.|+ .+..++.- +..-.+-++..++.. .+. .. +...
T Consensus 100 -------------------l~ri---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 100 -------------------LKRI---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSA 156 (405)
T ss_pred -------------------eeEE---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccc
Confidence 1111 256778888888 23333333 554555555442211 111 11 1122
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC-------e
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGW-------K 489 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~-------~ 489 (660)
.+..|.+.| ++++|...|.+.++|..+-+++..++-.. ..|..+.++..|++|+..+.|+.||.|+++.- +
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 344688899 99999999999999999999998887655 78999999999999999999999999998741 1
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
......++.+.. . ..-.+++|+.+|.|++++ ....++||.-..|.+++.+.+.. +.....+.|+|-...+++
T Consensus 237 ~e~~~K~qDvVN-k----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 237 VEPEHKLQDVVN-K----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHPVRPIIAS 310 (405)
T ss_pred cChhHHHHHHHh-h----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeecccccceeeeee
Confidence 100011110000 0 234578999999999984 56789999999999999987642 467888999999888888
Q ss_pred EecCCeEEEEECCCC
Q 006126 568 SCKSGHVKVFDTSTL 582 (660)
Q Consensus 568 g~~dg~I~iwd~~~~ 582 (660)
- ..|.|+||.....
T Consensus 311 i-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 311 I-ASGVVYIWAVVQV 324 (405)
T ss_pred c-cCCceEEEEeecc
Confidence 7 6799999987653
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=188.30 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=224.8
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
+--+|+||.. |.++ +..|.|.+|++|+.||+++||.+.+ +.|..... ..+.|.|++|+|.
T Consensus 392 ~~lvyrGHtg~Vr~i-----------Svdp~G~wlasGsdDGtvriWEi~T----gRcvr~~~----~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSI-----------SVDPSGEWLASGSDDGTVRIWEIAT----GRCVRTVQ----FDSEIRSVAWNPL 452 (733)
T ss_pred eeeeEeccCCeEEEE-----------EecCCcceeeecCCCCcEEEEEeec----ceEEEEEe----ecceeEEEEecCC
Confidence 3346788887 5554 7889999999999999999999994 66654322 3679999999997
Q ss_pred CC-EEEEEECCCcEEEEeccCCceee--------e-e---eccceeEEEecCCCCc----eeeecccCCCCCCeEEEEEe
Q 006126 323 GD-FLVALTQTATHKLWKWQSNKQSL--------E-E---ENVNMESQLYQPSSKL----VMTNDIAADPKDSISCFALR 385 (660)
Q Consensus 323 g~-~l~s~s~dg~i~vw~~~~~~~~~--------~-~---~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s 385 (660)
+. .+++++....+.|-+..-+.... . . ......+..|...+.. -+...+ .|...|..+.|+
T Consensus 453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWH 530 (733)
T KOG0650|consen 453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWH 530 (733)
T ss_pred CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeee
Confidence 75 33344444445555543331110 0 1 1222345678654221 111222 589999999999
Q ss_pred --CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126 386 --GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 386 --~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
|.||++.. + ..|.|.++........|....+.|.++.|+|.. ++++++ -..|+|||+.....++++......
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCee
Confidence 99999987 4 479999998877776776677789999999999 777776 457999999988888888777788
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 537 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~ 537 (660)
|..++.+|.|.-|+.|+.|+.+..+|+.-. .++.+ ....|. ..+++++|++.-.+++++ .||++.|+.-.-
T Consensus 610 iS~msihp~GDnli~gs~d~k~~WfDldls----skPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLS----SKPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred eeeeeecCCCCeEEEecCCCeeEEEEcccC----cchhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 999999999999999999999999999763 24555 455666 689999999999999995 679998886321
Q ss_pred -------C--ceeeeecCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 538 -------L--NHTSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 538 -------~--~~~~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
. -++..+.++. ....|..+.|+|...+|++++.||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 1344454421 13458899999999999999999999998
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.9e-20 Score=171.62 Aligned_cols=257 Identities=11% Similarity=0.169 Sum_probs=186.8
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.+|.+-|.++.|.+-|+.+|+|+.|++++|||...... -|...+. -..|.+.|..+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~------------~W~~Ts~-------Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG------------TWSCTSS-------WRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC------------ceEEeee-------EEecCCcEEEEEecCc
Confidence 35899999999999999999999999999999754432 1221110 01599999999998
Q ss_pred --CCEEEEEe-CCcEEEEECC---------CCeEEEEEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCC----
Q 006126 386 --GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---- 446 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~---------~~~~~~~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~---- 446 (660)
|+.+|+++ |+++.||.-. ......++......|+.+.|.|.. .+++++.||.++||+.-.-
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 99999999 9999999752 123345566777899999999965 9999999999999986432
Q ss_pred --ceeeEee-------ccCCCeEEEEEeCC---CCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 447 --KTKAKLK-------GHQNRITCLAYSLS---LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 447 --~~~~~~~-------~~~~~v~~l~~sp~---~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
...+.+. .+..+-.|+.|+|. ..+|+.|+.+ +.+.||....+... ...+. ...+|. .+
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w~kva-~L~d~~---dp 225 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-WLKVA-ELPDHT---DP 225 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-eeeeh-hcCCCC---Cc
Confidence 2222222 35667889999973 4567777765 47889987664321 12333 233777 79
Q ss_pred eEEEEEecC----CcEEEE-EecCcEEEEeCCCCc-----------------eeeeec-CCCCCCCeEEEEEccCCCEEE
Q 006126 510 VNHIQFHPD----QIHLLS-IHEGQIDVYEAPTLN-----------------HTSQLV-PDKMDLPITYATYSCDGKCIY 566 (660)
Q Consensus 510 v~~~~~sp~----~~~l~~-~~d~~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~dg~~l~ 566 (660)
|++++|.|+ -..|++ +.|| |+||.+.... .+..+. .++|++.|..+.|+-.|..|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 999999995 245666 5888 9999986311 111111 245899999999999999999
Q ss_pred EEecCCeEEEEECCC---CeeEEEee
Q 006126 567 VSCKSGHVKVFDTST---LELRCQIN 589 (660)
Q Consensus 567 sg~~dg~I~iwd~~~---~~~~~~~~ 589 (660)
+.|.||.||+|...- .++...+.
T Consensus 305 StGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred ecCCCceeeehhhhhhhhheeeeEEe
Confidence 999999999998643 33444444
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=173.54 Aligned_cols=275 Identities=14% Similarity=0.121 Sum_probs=196.7
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCc----eeeecccCCCCCCeEEEEEe---
Q 006126 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL----VMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~s--- 385 (660)
-...+.|||||..|++-+.|..+.+|++..... +.+.+. .+...........|+..+|.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dly--------------s~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M 116 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLY--------------SKKADGPLNFSKHLSYRYQEGETVYDYCWYSRM 116 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhc--------------ccCCCCccccccceeEEeccCCEEEEEEeeecc
Confidence 345689999999999999999999999876543 111100 00000000134556666665
Q ss_pred ------CCEEEEEe-CCcEEEEECCCCeEEEEEcCC--CC---CeEEEEEcCCC-eEEEEeCCCeEEEEeC-CCCceeeE
Q 006126 386 ------GSHLFSAS-GGKISIFSLETFQTLATFANP--PP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKAK 451 (660)
Q Consensus 386 ------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~--~~---~v~~v~~sp~~-~l~s~~~d~~I~iwd~-~~~~~~~~ 451 (660)
..++++.+ +.-|++||.-+|+....+... .. ...+++|+||| +|++| ..+.|+++|+ +.|.....
T Consensus 117 ~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 117 KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcc
Confidence 34666777 899999999999988877632 22 34689999999 77655 5789999998 66643322
Q ss_pred e-------eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 452 L-------KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 452 ~-------~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
+ .+..+-|.|++|+| +.+.+++|+...++-||.-.. ..++. +..+|. +.|+.+.|.++|+.|.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLF 266 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeec
Confidence 2 22367889999999 556899999888888887666 34566 566888 7999999999999999
Q ss_pred EE--ecCcEEEEeCCCC-ceeeeecCCCCCC-CeEEEEE--ccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCC
Q 006126 524 SI--HEGQIDVYEAPTL-NHTSQLVPDKMDL-PITYATY--SCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQP 596 (660)
Q Consensus 524 ~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~-~v~~~~~--s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~ 596 (660)
+| .+..|-.||++.. .++..+.. |.. .-..|-| .|+|++|++|+.||.|++||+++ |..+..+..+
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~----- 339 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY----- 339 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-----
Confidence 95 6789999999864 34444433 222 2233444 59999999999999999999998 6645444322
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
+..++ .|+++| --.++|+++..
T Consensus 340 ---sd~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 340 ---SDTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred ---ccccc--ceecCc-ccceeeeccCc
Confidence 55555 999999 57788887644
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=182.41 Aligned_cols=302 Identities=10% Similarity=0.063 Sum_probs=203.5
Q ss_pred EecCCCCEEEEEeCC---Cc--EEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-------CCCEEEEEECCCcEE
Q 006126 269 TSLPDADSAVCAKSL---EK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHK 336 (660)
Q Consensus 269 ~~spdg~~l~s~~~d---g~--i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-------dg~~l~s~s~dg~i~ 336 (660)
..-|....|+++-.. .. +.+|+-.. +....+..+- -.....|++|.. .|+|+|.|+.|..|.
T Consensus 132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e---~nlYvHHD~i---lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 132 QVKPSDNLILCARNEDDVSYLEVYVYNEEE---ENLYVHHDFI---LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred eeccCCcEEEEeeccCCceEEEEEEEcCCC---cceeEeccee---ccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 445666666666543 22 44555432 2222221110 133456777743 367999999999999
Q ss_pred EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc
Q 006126 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA 412 (660)
Q Consensus 337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~ 412 (660)
|||+.-.....-.........-...+.+. +.....+|+..|.+++|+ .+.||+|+ |.+|++||+.+|++..++.
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred Eeccccccccccceeechhhhhhhhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 99986433211100000000000000000 111122799999999999 77899999 9999999999999999999
Q ss_pred CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCe
Q 006126 413 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~ 489 (660)
.|...|.++.|+|.. .|++|+.|++|.+.|.+........-...+.|-.++|.|.. ..+++++.||+++-+|+|...
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC
Confidence 999999999999988 99999999999999998533332222256789999999854 457788899999999999843
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIY 566 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~ 566 (660)
.++. ....|. +.|.++++++.-..+++ +.|+.|++|++..-...........-+...|.++.|+-. +++
T Consensus 364 ----~~vw-t~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la 435 (463)
T KOG0270|consen 364 ----KPVW-TLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLA 435 (463)
T ss_pred ----Ccee-EEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEE
Confidence 4555 456777 79999999997766655 599999999987544322221111123356667777654 577
Q ss_pred EEecCCeEEEEECCCCeeEE
Q 006126 567 VSCKSGHVKVFDTSTLELRC 586 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~~~~~ 586 (660)
.|+..+.++|||+.++..+.
T Consensus 436 ~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 436 FGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ecCccceEEEeecccChhHH
Confidence 78888899999998876543
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.3e-20 Score=178.85 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=179.4
Q ss_pred CCEEEEEe-CCcEEEEECCCCe---EE----------------E--EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQ---TL----------------A--TFANPPPIATYFILLPQD--LFAFGFDDSSILVH 441 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~---~~----------------~--~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iw 441 (660)
|+++|.|+ |..|.|||+.--. +. + ...+|...|.+++|+..- .|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999 9999999984210 00 0 122678888889998877 99999999999999
Q ss_pred eCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 442 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 442 d~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
|+.+|++...+..|...|.++.|+| ...+|++|+.|+++.+.|.+.... .....+ .. +.|-.++|.|...
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk--~~------g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK--FD------GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE--ec------cceEEEEecCCCc
Confidence 9999999999999999999999999 567899999999999999995221 112222 11 5789999999766
Q ss_pred EEEE-E-ecCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126 521 HLLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 596 (660)
Q Consensus 521 ~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 596 (660)
..+. + .||+|+-+|++.. +++.++.. |..+|.++++++. -.++++++.|+.|++|++.......+..... .
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~--~- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF--K- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc--c-
Confidence 5544 4 8899999999975 77777764 7999999999865 4578899999999999987544322211100 0
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
-+. ..|+++.|...-++|.||..+.++|||+.+..+
T Consensus 418 ---~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 418 ---LGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ---ccc--eeecccCCCcceEEEecCccceEEEeecccChh
Confidence 011 237888886667899999999999999988754
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-20 Score=182.13 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=189.5
Q ss_pred CCeEEEEEe-CCEEEEEe---CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 377 DSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 377 ~~v~~v~~s-~~~l~s~~---dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
..+.+++|. .++|++++ |..+++|.-.. ++....-........|++..... ++++|+..+.|+|||++...+.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 348899999 66677666 67888886432 22222222222245577777777 9999999999999999977777
Q ss_pred eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--Eec
Q 006126 450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE 527 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d 527 (660)
+.+++|+..|+++.++-...+|++++..|.|.+..+.++... .++. .+.. ..|.-+.|+|..+.+++ +.+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~---~~sg---qsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFT---IDSG---QSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--ccee---cCCC---CeEEEeecccccceeeEeeccC
Confidence 888999999999999999999999999999999999985421 1111 1111 45778999999998887 588
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
|.|.+||+....++..+.. .|..+...+||+|. ..+|++.+.|..|++||....+....+.. +++..
T Consensus 187 G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls-- 254 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS-- 254 (673)
T ss_pred CeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc--
Confidence 9999999988888777755 58999999999985 56788999999999999998887777764 45555
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 607 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.|+|.| +|.+|+.|+..|.|..||+...+
T Consensus 255 tvaf~~-~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 255 TVAFSE-CGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecC-CceEEEeecCCceEEEEecccCC
Confidence 899999 89999999999999999998654
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=6.1e-20 Score=174.68 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=183.2
Q ss_pred CCCCCeEEEEEe--CCE--EEEEe-CCcEEEEECCC----------------CeEEEEEcCCCCCeEEEEEcCCC--eEE
Q 006126 374 DPKDSISCFALR--GSH--LFSAS-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 430 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~--l~s~~-dg~I~iwd~~~----------------~~~~~~~~~~~~~v~~v~~sp~~--~l~ 430 (660)
.|.+.++-+..+ ++- .++-+ .|.|.||++.. .+++.++.+|...=+.++|||-. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577777777766 443 33334 59999999842 34667788888888999999954 899
Q ss_pred EEeCCCeEEEEeCCCCcee---eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 431 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 431 s~~~d~~I~iwd~~~~~~~---~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
+|.--+.|++|...+|.-. ..+.+|+..|-.++|||. ...|++||.||+|+|||++.+... ..+. ...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeE--eeccC--
Confidence 9988899999999887543 456679999999999995 457899999999999999997432 2222 25666
Q ss_pred CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---CceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC
Q 006126 507 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~ 581 (660)
+.|+-+.|+..-.+|++| .||+++|||++. ++++..+.- |..+|+++.|+|.. ..|++++.|..|.|||+..
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 789999999998888885 889999999985 567777764 79999999999854 6788889999999999863
Q ss_pred Cee-----------EEEeecc-cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 582 LEL-----------RCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 582 ~~~-----------~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
..- +..+++. .|+-.| ...+. .+.||++.+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence 211 1111111 111112 33344 8999998888999999998 45554
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-18 Score=155.85 Aligned_cols=287 Identities=14% Similarity=0.171 Sum_probs=202.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 391 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s 391 (660)
..|.+-+++|.+++|++|..+|.|.+..+.+-..... .+.+...+-.. .+|.++|+.++|.+.+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~~iv~e--qahdgpiy~~~f~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKLKIVPE--QAHDGPIYYLAFHDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCcceeec--cccCCCeeeeeeehhheee
Confidence 3566778999999999999999999998764422000 11111111111 2799999999999999999
Q ss_pred EeCCcEEEEECCCCeE------EEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126 392 ASGGKISIFSLETFQT------LATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 392 ~~dg~I~iwd~~~~~~------~~~~~-------~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~ 457 (660)
|+||.|+-|..+.... ..... ..-..|+++...|.. -++.++.|+.++-||+++|+..+++++|+.
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999999997643211 11111 122457889999887 666677999999999999999999999999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee---eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126 458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 534 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd 534 (660)
.|.++.--.....+++|+.||++|+||.++++......... ....|.. .+|.+++. +..++++|....+.+|.
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~--~edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAV--NEDWLVCGGGPKLSLWH 233 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEec--cCceEEecCCCceeEEe
Confidence 99999885556688999999999999999976544322221 1112221 35555554 46699998888999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
+++.++..++.. ..++..+.|. .+.++++++.+.|.-|.+. |.+...++. + ....+ ..+|+-.-
T Consensus 234 Lrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~--s~~c~--s~s~~~~p 297 (325)
T KOG0649|consen 234 LRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV------E--STACY--SASWQTSP 297 (325)
T ss_pred ccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC------C--cccee--eecccCCc
Confidence 999999888865 6678888885 5578888888899999875 444433332 2 22233 55555421
Q ss_pred CCEEEEEeCCCeEEEEe
Q 006126 615 PNRIALGLTNGRVHVIE 631 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~ 631 (660)
-+++-.++....+.|+.
T Consensus 298 ~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHILK 314 (325)
T ss_pred eEEEEecccceeeeeee
Confidence 34566667777787764
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-18 Score=167.88 Aligned_cols=297 Identities=15% Similarity=0.118 Sum_probs=210.7
Q ss_pred CCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC--ceeeecccCCCCCCeEEEEEe--
Q 006126 311 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK--LVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 311 ~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
..+|..+.|.+++. .++||+.|..|++|.+..+.. ..+ .+...-...+|...|+++.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~----------------~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP----------------GGGDMKVEYLSSLSRHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCC----------------CCCceeEEEeecccCCcceeEEEEEcCC
Confidence 46899999999876 999999999999999765542 111 111111122799999999999
Q ss_pred CCEEEEEe-CCcEEEEECC--------C--------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126 386 GSHLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~--------~--------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~ 447 (660)
|+.|++|+ +|.|.+|... + ....+.+.+|...|..++|+|++ .+++++.|..+++||+..|+
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 89999999 7999999765 2 23455677899999999999999 99999999999999999999
Q ss_pred eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee--ec-----------cCC-CCCCeEEE
Q 006126 448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ--TG-----------LVP-ETTIVNHI 513 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~-----------~~~-~~~~v~~~ 513 (660)
....+..|...+..++|.|-++++++-+.|...+.+++.....+.......+. .+ |+. .......+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 99999999999999999999999999999998888777654333222111011 00 100 01234557
Q ss_pred EEecCCcEEEE-E----ecCc-----EEEEeCCC-CceeeeecCCCCCCCeEEEEEcc------------------CCCE
Q 006126 514 QFHPDQIHLLS-I----HEGQ-----IDVYEAPT-LNHTSQLVPDKMDLPITYATYSC------------------DGKC 564 (660)
Q Consensus 514 ~~sp~~~~l~~-~----~d~~-----i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~------------------dg~~ 564 (660)
+|+|||..+++ + ..+. .++++-.. .++...+.. ...+...+.|+| -+-.
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 89999999987 2 2233 35555332 223333332 144455555543 1223
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 565 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 565 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++.+ ..+.|+|||.++.++....... |-.. ++.++|++ ||.+|+..|.||-..+-.+...+
T Consensus 315 faiA-t~~svyvydtq~~~P~~~v~ni-------hy~~--iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIA-TKNSVYVYDTQTLEPLAVVDNI-------HYSA--ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEe-ecceEEEeccccccceEEEeee-------eeee--ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 4444 4567999999998888776532 1233 45999999 89999999999987776655443
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=5.3e-19 Score=178.11 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=104.2
Q ss_pred CCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCce-------eeeecCCCCCCCeEEEEEccC-CCEEEEEecCCeEEEE
Q 006126 508 TIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH-------TSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVF 577 (660)
Q Consensus 508 ~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~s~d-g~~l~sg~~dg~I~iw 577 (660)
..|+.+.|.| |...|++ +.||.|++|.+..+.. -..+. .|...|+++.|+|- .+.|++++.|.+|++|
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt--~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT--IHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee--cccceEEEEEecchhhhHhhhhhccceeeee
Confidence 4577788888 5667777 6999999999875432 22333 36889999999984 5789999999999999
Q ss_pred ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce-eccCCCCccccccc
Q 006126 578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV-EWGKLPFTDSREFS 651 (660)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~-~w~~~~~~~~~~~~ 651 (660)
|+.+++....+. || .+.+. +++|+| ||+.+|+.+.||+|++|++.+++. .+....|.+.+..+
T Consensus 706 Dl~~~~~~~~l~-------gH-tdqIf--~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 706 DLANAKLYSRLV-------GH-TDQIF--GIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred ehhhhhhhheec-------cC-cCcee--EEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee
Confidence 999999888877 66 44455 999999 899999999999999999998865 66666676655443
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=180.87 Aligned_cols=279 Identities=13% Similarity=0.114 Sum_probs=195.6
Q ss_pred CEEEEEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
..|+.+..||.|.++|....... .+.+-... ..|.+.|..+.|-|....|++++.|.++++||++.....
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~------- 135 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV------- 135 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------
Confidence 47889999999999998753222 11111112 239999999999996678999999999999998877641
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe-----------------------
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ----------------------- 406 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~----------------------- 406 (660)
.+.+ .+ ||...|.+++|. ...|++|+ ||.|.|||+.-..
T Consensus 136 ---------G~~~---~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 136 ---------GGRL---NL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ---------ccee---ec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 1111 11 899999999999 56788898 9999999985321
Q ss_pred ----EEEEEcCCCCCeEE---EEEcCCC-eEEEEeC-CCeEEEEeCCCCceeeE--------eecc---CCCeEEEEEeC
Q 006126 407 ----TLATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAYSL 466 (660)
Q Consensus 407 ----~~~~~~~~~~~v~~---v~~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~--------~~~~---~~~v~~l~~sp 466 (660)
.++....+...|.+ +.+..|. .|++++. |+.|+|||+++...... +..| ...+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 01111233444544 5566677 8888887 99999999987644322 2223 34567777888
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~ 545 (660)
.|.+|.+.+.|+.|++|++.+-.. .++. ...++... ..-..-..+||+.++++ +.|...++|.+.+.+.--.+.
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCc---Cchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 889998888899999999987331 2222 22333210 11223456899999999 599999999998766543333
Q ss_pred CCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCC
Q 006126 546 PDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~ 582 (660)
. +|...|++++|.|.. .-++++++|..++||++..+
T Consensus 357 ~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 357 L-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred h-CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3 378999999998643 34666699999999999765
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=6.9e-19 Score=169.33 Aligned_cols=292 Identities=16% Similarity=0.154 Sum_probs=205.4
Q ss_pred EecCCCC-EEEEEeCCCcEEEEeccCcCCCc---cee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 269 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPS---ECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 269 ~~spdg~-~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
.|.+++. .+++|+.|..|+||.+......+ .+. .-.| ..|...|+++.|+|+|+.||+|+.+|.+.+|.....
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 6666666 99999999999999987543333 111 1123 339999999999999999999999999999987632
Q ss_pred ceeeeeeccceeEEEecCCC-----C--ceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC
Q 006126 344 KQSLEEENVNMESQLYQPSS-----K--LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 413 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~ 413 (660)
.. .+..+ . ..+.. ...+|...|+.++|+ +.++++++ |..+++||+..|.....+..
T Consensus 98 ~~-------------~~~d~e~~~~ke~w~v~k-~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 98 RI-------------FDADTEADLNKEKWVVKK-VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred CC-------------ccccchhhhCccceEEEE-EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 11 11111 1 11111 122799999999999 88999999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--------c-----------c----CCCeEEEEEeCCCC
Q 006126 414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------H----QNRITCLAYSLSLN 469 (660)
Q Consensus 414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--------~-----------~----~~~v~~l~~sp~~~ 469 (660)
|..-+..++|.|-+ ++++-+.|...+.+.+...+.++... + | ......++|+|+|.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 99999999999999 99999988877777665433322111 0 1 12334578899999
Q ss_pred EEEEEeC----CCc-----EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------------------CCcEE
Q 006126 470 VLVSSGA----DAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------DQIHL 522 (660)
Q Consensus 470 ~l~s~s~----dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------------~~~~l 522 (660)
++++.+. .+. .++|+-.. . ..+...++ +.. .....+.|+| -+-.+
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~---l-~rP~~~lp-~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKD---L-KRPAARLP-SPK---KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred EEEcccceeeeCCceeeceeEeecccc---c-cCceeecC-CCC---cceEEEEeeeeEEEeccccccccccccccceEE
Confidence 9987542 222 23343221 1 11111011 111 2344444444 22334
Q ss_pred EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeE
Q 006126 523 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 585 (660)
Q Consensus 523 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~ 585 (660)
+++..+.|++||.++..++..... -|-..++.++|++||.+++..+.||...+-.++..++-
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 457888999999998888776654 47899999999999999999999999888777766544
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.7e-20 Score=200.62 Aligned_cols=243 Identities=17% Similarity=0.248 Sum_probs=186.6
Q ss_pred CCCCeEEEEEe--CC----EEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEE
Q 006126 375 PKDSISCFALR--GS----HLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 439 (660)
Q Consensus 375 h~~~v~~v~~s--~~----~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~ 439 (660)
-....+.++|. +. .|+.|. ||.|.+||...- ..+.+...|.+.|..+.|++.. ++++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 34567889998 44 366666 899999998652 2455667899999999999987 999999999999
Q ss_pred EEeCCCCceeeEee--ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 440 VHCPCTKKTKAKLK--GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 440 iwd~~~~~~~~~~~--~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
|||+..-+.-..+. ...+.|.+++|+. ....|++++.+|++.|||++..+.+ +. + ..+.+ ...+..++|+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi----i~-l-s~~~~-~~~~S~l~Wh 215 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI----IK-L-SDTPG-RMHCSVLAWH 215 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc----cc-c-ccCCC-ccceeeeeeC
Confidence 99998744333331 1457899999987 4567899999999999999984322 22 1 11110 0357889999
Q ss_pred cCCcE-EEE-E-ec--CcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 517 PDQIH-LLS-I-HE--GQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 517 p~~~~-l~~-~-~d--~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
|+... +++ + .| -.|.+||++.. .+++.+. .|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 98643 333 3 33 37999999854 4556664 479999999999866 899999999999999999999998886
Q ss_pred cccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 590 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 590 ~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.. ++ ++..+.|+|.+...++.++-||.|-|+.+..+.
T Consensus 294 ~~--------~n--W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQ--------GN--WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CC--------Cc--ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 31 33 455999999888899999999999999998764
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=7.9e-20 Score=197.03 Aligned_cols=287 Identities=16% Similarity=0.163 Sum_probs=211.5
Q ss_pred eEecCCCC-EEEEEe----------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCE----EEEEECC
Q 006126 268 STSLPDAD-SAVCAK----------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQT 332 (660)
Q Consensus 268 ~~~spdg~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~----l~s~s~d 332 (660)
.+|||++. ++++|. .+.++-||.+........+... ....-..+-..++|.+.|.. ||.|..|
T Consensus 12 ~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 12 FAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--GSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred EEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--ccccccccceeeeecccCCCccceeeccccC
Confidence 38888886 555553 3445666665432222111110 01113567889999998876 7888889
Q ss_pred CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEE
Q 006126 333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTL 408 (660)
Q Consensus 333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~ 408 (660)
|.|.+|+...... ......+... ..|.+.|..+.|+ ++.||+|+ ||.|.|||+...+.-
T Consensus 90 G~I~ly~p~~~~~---------------~~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA---------------NASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred CceEEecchhhcc---------------CcchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence 9999998754210 0011122211 1699999999999 77999999 899999999874433
Q ss_pred EEE--cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC--CeEEEEEeCCC-CEEEEEeCCC---
Q 006126 409 ATF--ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGADA--- 478 (660)
Q Consensus 409 ~~~--~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~-~~l~s~s~dg--- 478 (660)
.+. ......|.+++|+..- .|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|++ ..+++++.|.
T Consensus 153 ~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 153 FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 333 1356789999999877 899999999999999998888777765544 46789999976 4566666654
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 556 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 556 (660)
.|.+||+|.. ..+++ +..+|. ..|.++.|++.+ .++++ +.|+.|.+|+.++++.+..+.. ....+..+
T Consensus 233 viqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv 302 (1049)
T KOG0307|consen 233 VIQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDV 302 (1049)
T ss_pred eeEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeee
Confidence 5999999873 35556 568898 689999999977 66666 5999999999999999998865 37889999
Q ss_pred EEccCCC-EEEEEecCCeEEEEECCCCe
Q 006126 557 TYSCDGK-CIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 557 ~~s~dg~-~l~sg~~dg~I~iwd~~~~~ 583 (660)
.|+|... .+++++-||.|-||.+..+.
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecCC
Confidence 9998665 88889999999999987654
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=169.80 Aligned_cols=207 Identities=12% Similarity=0.114 Sum_probs=161.3
Q ss_pred CCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCC----------------CceeeEeeccCCCeEEEEEeCCC-CEEE
Q 006126 413 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLSL-NVLV 472 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~----------------~~~~~~~~~~~~~v~~l~~sp~~-~~l~ 472 (660)
+|.+.++.+..++-+ +.++-+..|.|.|||+.. .+++.++.+|.+.=+.+.|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 555666666665554 677778889999999752 24677888999999999999932 2477
Q ss_pred EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCCC
Q 006126 473 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMD 550 (660)
Q Consensus 473 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~ 550 (660)
+|..-+.|++|...++.-. .-+.-+.+|+ ..|-.++|||...-+++ +.|++|+|||++.+.....+....|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~---vd~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK---VDQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cCccccceEeeeeccCcee---ecCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 8888889999999885421 1111345687 68999999997666554 59999999999988443333335689
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCC---CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE
Q 006126 551 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 627 (660)
Q Consensus 551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v 627 (660)
..|+-+.|+.+..+||+|+.||+++|||+++ ++++..++.| ..+|+ ++.|+|.+...|+++|.|..|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--------k~pIt--sieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--------KAPIT--SIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--------cCCee--EEEeccccCceEEeccCCCcE
Confidence 9999999999888999999999999999975 5666777644 66666 999999888899999999999
Q ss_pred EEEeCCCC
Q 006126 628 HVIEPLES 635 (660)
Q Consensus 628 ~iw~~~~~ 635 (660)
.|||+.-.
T Consensus 373 tiWDlsvE 380 (440)
T KOG0302|consen 373 TIWDLSVE 380 (440)
T ss_pred EEEEeecc
Confidence 99998643
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=175.94 Aligned_cols=268 Identities=13% Similarity=0.168 Sum_probs=204.5
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
|...+.|-|||..|+.+..+ .+.+||..+ .+.++. |. ||.+.|.|++|+.||+.+|+|+.|..|.+|+-+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~nd---G~llqt--LK--gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSD---GTLLQP--LK--GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCC---cccccc--cc--cccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 44456999999988887654 588999986 344444 44 49999999999999999999999999999975443
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v 421 (660)
.. +. ..|.+.|.|+.|+ ...|++++=...-+|........+ . .....+.++
T Consensus 86 G~--------------------Lk-----YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~C 138 (1081)
T KOG1538|consen 86 GI--------------------LK-----YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICC 138 (1081)
T ss_pred ce--------------------ee-----eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEe
Confidence 32 11 1699999999999 888999996667788876432221 1 224567899
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee---ccCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEEcCCCeeee
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~-----~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
+|..|| +++.|-.+|+|.+-+- +|+....+. |.+.+|++++|+|.. ..+++.....++.++.+.......
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 999999 9999999999999874 344433333 477899999999953 467788888888888876522111
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
.+.+. -...|+.+.++|.+++. |.|+.+++|-- .|-.+.++.. ....|+.++..|++++++.|+.|
T Consensus 218 ~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 218 DRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred cccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc--cceeEEEEEEccCCceEEEEEcc
Confidence 22222 34668999999999999 59999999974 5655555532 47899999999999999999999
Q ss_pred CeEEEEECC
Q 006126 572 GHVKVFDTS 580 (660)
Q Consensus 572 g~I~iwd~~ 580 (660)
|+|..|++-
T Consensus 285 GTiACyNl~ 293 (1081)
T KOG1538|consen 285 GTIACYNLI 293 (1081)
T ss_pred CeeehhhhH
Confidence 999999864
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=3.2e-18 Score=159.95 Aligned_cols=272 Identities=16% Similarity=0.159 Sum_probs=199.5
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcC---C-C-----cceeeeecCCCCCCCCeEEEEEe-------cCCCEEEEEECC
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLIN---E-P-----SECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQT 332 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~---~-~-----~~~~~~~l~~~~h~~~V~~~~~s-------pdg~~l~s~s~d 332 (660)
.|||||..|++-+.|..+++|++.-.- . . .....+.++ ....|...+|- |+..++++.+.+
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeecccc
Confidence 899999999999999999999885210 0 0 011111111 25567777775 677889999999
Q ss_pred CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC---CeEEEEEe--CCEEEEEeCCcEEEEEC-CCCe
Q 006126 333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--GSHLFSASGGKISIFSL-ETFQ 406 (660)
Q Consensus 333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s--~~~l~s~~dg~I~iwd~-~~~~ 406 (660)
.-|++||.-+++.+.+ -+.|| |.. ...+++|+ |.+|++|....|++||+ +.|.
T Consensus 133 ~PIh~wdaftG~lraS-------y~~yd--------------h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS-------YRAYD--------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred Cceeeeeccccccccc-------hhhhh--------------hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 9999998877765222 11222 332 34589999 89999999999999999 4454
Q ss_pred EEEEE---c----CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-
Q 006126 407 TLATF---A----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA- 476 (660)
Q Consensus 407 ~~~~~---~----~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~- 476 (660)
....+ . +..+-+.|++|+|.. .++.|+...++-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 32221 1 235567899999987 8999999999999988888999999999999999999999999999885
Q ss_pred CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeE
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~ 554 (660)
|..|-.||++... .++. ....|......-.-....|++++|++| .||.|++||+++ +..+..+.. +...++
T Consensus 272 ~dkIl~WDiR~~~----~pv~-~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--~sd~vN 344 (406)
T KOG2919|consen 272 DDKILCWDIRYSR----DPVY-ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--YSDTVN 344 (406)
T ss_pred CCeEEEEeehhcc----chhh-hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--cccccc
Confidence 7789999999732 2333 233333100122234557899999996 999999999988 665666543 588899
Q ss_pred EEEEccCCCEEEEEecC
Q 006126 555 YATYSCDGKCIYVSCKS 571 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~d 571 (660)
.++++|-=.++++++..
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 99999997788877654
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.4e-18 Score=169.60 Aligned_cols=250 Identities=14% Similarity=0.147 Sum_probs=190.4
Q ss_pred CCCCCeEEEEEe---C-CEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEe
Q 006126 374 DPKDSISCFALR---G-SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHC 442 (660)
Q Consensus 374 ~h~~~v~~v~~s---~-~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd 442 (660)
-+.++|++++|+ . +.+++|. .|+|-+||+.+. .-+..+..|..+|.++.|+|.+ .+++.+.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 378899999999 4 4666666 799999999532 3355677999999999999998 999999999999999
Q ss_pred CCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 443 PCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 443 ~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
++.+..-..+.. ....+.++.|+.+...++.+..=|...+||++++... .. ...-|. ..|.+++++|-..
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----~~-~~~lh~---kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----YE-NLRLHK---KKITSVALNPVCP 335 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----ch-hhhhhh---cccceeecCCCCc
Confidence 987754333332 4556778889888888888888889999999985421 11 223344 4799999999776
Q ss_pred EEE-E-EecCcEEEEeCCCCceeee--ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC----CCeeEEEeeccc
Q 006126 521 HLL-S-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS----TLELRCQINLTA 592 (660)
Q Consensus 521 ~l~-~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~----~~~~~~~~~~~~ 592 (660)
+++ + |.|++.+|||++....... +..-.|...|.++.|||++-.|++.+.|..|+|||.. .-.+...+.-.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn- 414 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN- 414 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc-
Confidence 655 4 5999999999986443332 3333589999999999998889999999999999984 33444444311
Q ss_pred ccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 593 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 593 ~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.. +..........|.| +..++++|-.-..|-|+|...++-
T Consensus 415 ~~----t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 415 NR----TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred Cc----ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEE
Confidence 10 12334455789999 889999999999999999998873
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=6.1e-16 Score=164.40 Aligned_cols=324 Identities=22% Similarity=0.310 Sum_probs=241.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE-ecCCC-EEEEEEC-CCcEEEEeccC-C
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQS-N 343 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~-spdg~-~l~s~s~-dg~i~vw~~~~-~ 343 (660)
..+.+.+..++.++.|+.+.+|+..... .....+ ... +...+..+.+ ++++. +++..+. |+.+.+|+... .
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 145 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSL--EGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG 145 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEE--ecc-CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC
Confidence 4888999999999999999999998521 023332 210 2236777777 88887 5555455 89999998765 2
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT 419 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~ 419 (660)
.. ..... .|...|..++|+ +..+++++ ++.+++|++..+..+..+..|...+.
T Consensus 146 ~~---------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 146 KL---------------------IRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred eE---------------------EEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceE
Confidence 11 11111 689999999999 66777776 89999999999899999999999999
Q ss_pred EEEEcCCC-eEE-EEeCCCeEEEEeCCCCceee-EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 420 YFILLPQD-LFA-FGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 420 ~v~~sp~~-~l~-s~~~d~~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
+++|+|++ .++ +++.|+.|++||...+..+. .+.+|.... ...|+|++..+++++.|+.+++||++.... .+
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~ 277 (466)
T COG2319 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----LL 277 (466)
T ss_pred EEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----EE
Confidence 99999998 444 44999999999998888887 688888775 448999998999999999999999987442 22
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeE
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHV 574 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I 574 (660)
... .+|. ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+.+
T Consensus 278 ~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 212 4565 68999999998888888 56788999999887766655422356678999994343566665 678999
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE-EeCCCeEEEEeCCCCceeccC
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s-~s~Dg~v~iw~~~~~~~~w~~ 641 (660)
++|+............ ... +..+.+++ + ..+.. +..++.+.+|+..........
T Consensus 354 ~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 354 RLWDLRTGKPLKTLEG---------HSN--VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EeeecCCCceeEEecC---------Cce--EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeec
Confidence 9999998872222211 111 34888988 7 55555 889999999999988764433
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=3.3e-18 Score=173.33 Aligned_cols=272 Identities=14% Similarity=0.186 Sum_probs=200.7
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 390 (660)
Q Consensus 313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~ 390 (660)
.|..++|-|||..|+.+..+ .+ .+||++.|..++.+. +|.+.|+|++|+ |+.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rl---------------------liyD~ndG~llqtLK--gHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RL---------------------LVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecCC-EE---------------------EEEeCCCcccccccc--cccceEEEEEEccCCceec
Confidence 89999999999887776654 33 356667777666554 899999999999 99999
Q ss_pred EEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 391 SAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 391 s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
+|+ |..|.+|+.+-. ..++ .|...|.|+.|+|-. .+++++-. ..-+|....... .+.+ ...++.+++|..|
T Consensus 70 SG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTND 143 (1081)
T ss_pred cCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCC
Confidence 999 999999986532 2233 789999999999999 88888744 456787654332 2222 3457889999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-----cEEEE-EecCcEEEEeCCCCcee
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHT 541 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~-~~d~~i~iwd~~~~~~~ 541 (660)
|.+++.|-.||+|.+-+-...+ ...+. .+.|.. ++|.+++|+|.. ..+++ -...++.++.+ +|+.+
T Consensus 144 GqylalG~~nGTIsiRNk~gEe---k~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I 215 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEE---KVKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI 215 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCc---ceEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence 9999999999999998654422 12233 233444 789999999963 23444 35567777777 45554
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
..-.. -.....|+.+.++|.+++.|+.|+.+.+|-.+ |-.+.++. .-++.+| .|+.+| ++++++.|
T Consensus 216 gk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg--------~~D~WIW--tV~~~P-NsQ~v~~G 281 (1081)
T KOG1538|consen 216 GKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVG--------EQDSWIW--TVQAKP-NSQYVVVG 281 (1081)
T ss_pred ccccc--CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeecc--------ccceeEE--EEEEcc-CCceEEEE
Confidence 32211 14456688999999999999999999999654 54455442 2256666 999999 89999999
Q ss_pred eCCCeEEEEeCCCCc
Q 006126 622 LTNGRVHVIEPLESE 636 (660)
Q Consensus 622 s~Dg~v~iw~~~~~~ 636 (660)
+.||+|.-|++....
T Consensus 282 CqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 282 CQDGTIACYNLIFST 296 (1081)
T ss_pred EccCeeehhhhHHhH
Confidence 999999999986543
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5e-18 Score=160.02 Aligned_cols=277 Identities=12% Similarity=0.119 Sum_probs=185.5
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 398 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~ 398 (660)
..+|++-.+|.|++||..+++. +.... ++...+..+.|. .+.+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---------------------l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---------------------LEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---------------------hheec--CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 4578888899999988776543 11111 677778888887 46778888 99999
Q ss_pred EEECCCCeEEEEE--cCCC-CCeEEEEEcCCC-eEEEEe----CCCeEEEEeCCCCce-eeEe-eccCCCeEEEEEeC-C
Q 006126 399 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S 467 (660)
Q Consensus 399 iwd~~~~~~~~~~--~~~~-~~v~~v~~sp~~-~l~s~~----~d~~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~sp-~ 467 (660)
+||+++......+ ..+. .+..|++.+..+ .+++|+ .|-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999886554433 3444 456777777666 777775 356899999998766 5555 55999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC--cEEEEEecCcEEEEeCCCCceeeeec
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~d~~i~iwd~~~~~~~~~~~ 545 (660)
.+.|++||.||.|.+||++..... ...++ +. .+. +.|.++.|+.++ +....+...+..+|+++.+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~Ee-DaL~~-vi-N~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEE-DALLH-VI-NHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcch-hhHHH-hh-ccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 678999999999999999874211 11222 11 222 579999999888 54444899999999999888665543
Q ss_pred CCCC----------CCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 546 PDKM----------DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 546 ~~~~----------~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
...- ...+...-...++..++.++. -|...++-+............ ..+.|++..-|+ ++.|.. .
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~-a~l~g~~~eiVR--~i~~~~-~ 327 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP-AILQGGHEEIVR--DILFDV-K 327 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcc-ccccCCcHHHHH--HHhhhc-c
Confidence 3210 112222222234455555555 466666544422212222211 122254455566 777776 6
Q ss_pred CCEEEEEeCCCeEEEEeCC
Q 006126 615 PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~ 633 (660)
+.++.|||.||.+.+|...
T Consensus 328 ~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cceeeccCCCceEEEEecC
Confidence 8899999999999999963
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.6e-15 Score=161.17 Aligned_cols=312 Identities=22% Similarity=0.293 Sum_probs=232.0
Q ss_pred cCCCC-EEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceee
Q 006126 271 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 347 (660)
Q Consensus 271 spdg~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~ 347 (660)
++++. .++..+. |+.+.+|+... ...... .+. +|...|..++|+|++.++++++. |+.+++|+......
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~-~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 190 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST---PGKLIR-TLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-- 190 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC---CCeEEE-EEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--
Confidence 78887 5555455 89999999973 012221 232 38999999999999998898886 99999998765322
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEE-EEcCCCCCeEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI 422 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~-~~~~~~~~v~~v~ 422 (660)
+.... +|...|.+++|+ +. .+++++ |+.|++||...+.... .+..|.... ...
T Consensus 191 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 191 -------------------LSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred -------------------EEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 11111 588999999999 55 455546 8999999999888888 688887775 448
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
|+|++ .+++++.|+.+++|++..... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........ .
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~ 324 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L 324 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence 99999 888999999999999987664 44446788999999999988898889999999999988854322111 1
Q ss_pred eccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEE
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF 577 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iw 577 (660)
..|. ..+..+.|.+++..++.+ .|+.+.+|+............ ...+..+.+++ ...++. +..++.+.+|
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 3454 458889884332455553 778899999987773333321 22288899988 544444 6888999999
Q ss_pred ECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 578 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+............. ... +....+.+ ++..+++++.++++++|+...
T Consensus 398 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDGH--------TSR--VTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccCC--------CCc--EEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 99998877665421 023 34788888 788999999999999999987
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-16 Score=167.37 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=241.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC---CEEEEEECCCcEEEEeccCCce
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg---~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
.||+|+++++.... ..|+||... ++.+.. .|++ |..++..+.+.|.. .++.+++.||.|++||+..+..
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~----Tg~~i~-~l~~--~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTA----TGECIT-SLED--HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecc----hHhhhh-hccc--ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 89999998886654 679999998 477766 3655 89999999998855 4778999999999999877654
Q ss_pred eee------eec--------------------------------------------------------------------
Q 006126 346 SLE------EEN-------------------------------------------------------------------- 351 (660)
Q Consensus 346 ~~~------~~~-------------------------------------------------------------------- 351 (660)
... ...
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 321 000
Q ss_pred ----cceeEEEecCCCCc--eeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCe
Q 006126 352 ----VNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIA 418 (660)
Q Consensus 352 ----~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v 418 (660)
....+.+|....+. .........|.-.+++++++ +++++++. ||.|.+|.--. ....+.+.-|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 00001344433321 11111112466778899999 88999998 99999996432 12344566788999
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 497 (660)
.+++|+++| +|++|+..+.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|+.|.+....+-+.. ..+.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tIs 331 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STIS 331 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhcc
Confidence 999999999 99999999999999999987 4455567889999999999999999999999999877552211 1111
Q ss_pred eeeec----cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCC---------CCCCeEEEEEccCCC
Q 006126 498 SFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------MDLPITYATYSCDGK 563 (660)
Q Consensus 498 ~~~~~----~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~dg~ 563 (660)
.+... .....+-.+.++++|.-+.++. +..+.|.+||+.+.+.+..+..-. +...+++++.+..|.
T Consensus 332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs 411 (792)
T KOG1963|consen 332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS 411 (792)
T ss_pred CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence 01000 0000145677899995555554 799999999998877665543211 234577888888899
Q ss_pred EEEEEec--------C--CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 564 CIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 564 ~l~sg~~--------d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+++|+-. | -.+++|.......-..+......|.| .. . +..+..+|.....++++|.||.++||-+.
T Consensus 412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~-~-vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NA-F-VATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ce-e-EEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 9998642 3 35788987766555555544334333 32 2 22344455344489999999999999993
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-16 Score=144.14 Aligned_cols=276 Identities=17% Similarity=0.252 Sum_probs=190.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCc-----CCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLI-----NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
+++|.+++++.|+.+|+|.+..+... ..+++...+ +..+|.++|..++|.. .+|++|+ ||.|+-|.+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv--~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV--PEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCccee--eccccCCCeeeeeeeh--hheeecc-CceEEEeeehhh
Confidence 88999999999999999999988632 223344433 3355999999999983 4566665 599999988654
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATY 420 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 420 (660)
.... ..-.+|......... . -.-..|+++... +..|.+|+|+.++-||+++|+..+++++|.+-+.+
T Consensus 92 ~es~------~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 92 EESL------ATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred hhhc------cchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 3310 011345443322110 0 122346676666 66777777999999999999999999999999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC----------CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ----------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~----------~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
+.-.... .+++|+.||++++||.+++++++.+.... ..|-+++. +..+|++|+ ...+.+|.+++.+
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 9885555 99999999999999999999988774321 23445444 566887665 5688999999977
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC-CCEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~s 567 (660)
.....++. +.+..+.|..| .+++ |..+.|.-|.+ +|......... ....++..|+.. -++|-.
T Consensus 239 ~t~vfpip----------a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 239 STCVFPIP----------ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFISI 303 (325)
T ss_pred ceEEEecc----------cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEEe
Confidence 66555555 67888888754 4444 56778988987 45544444332 344555666533 245555
Q ss_pred EecCCeEEEE
Q 006126 568 SCKSGHVKVF 577 (660)
Q Consensus 568 g~~dg~I~iw 577 (660)
++..+.+.|+
T Consensus 304 ag~s~~~~i~ 313 (325)
T KOG0649|consen 304 AGFSNKLHIL 313 (325)
T ss_pred cccceeeeee
Confidence 5556666665
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=7.9e-18 Score=157.77 Aligned_cols=258 Identities=14% Similarity=0.136 Sum_probs=186.3
Q ss_pred ccCCCCCCeEEEEEe-------CCEEEEEeCCcEEEEECCCCe---EEEEEc--CCCCCeEEEEEcCC---C--eEEEEe
Q 006126 371 IAADPKDSISCFALR-------GSHLFSASGGKISIFSLETFQ---TLATFA--NPPPIATYFILLPQ---D--LFAFGF 433 (660)
Q Consensus 371 ~~~~h~~~v~~v~~s-------~~~l~s~~dg~I~iwd~~~~~---~~~~~~--~~~~~v~~v~~sp~---~--~l~s~~ 433 (660)
+.++|+.++..++|+ ...+++++...+.+|...... .++.+. .++.....++|+-+ + .++.|+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 334799999999998 345777778899999876433 333332 35666777888643 3 899999
Q ss_pred CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE
Q 006126 434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 512 (660)
Q Consensus 434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 512 (660)
.-|.|+|.|+.++++...+.+|...|+.+.++|+. ++++++|.|.+|++|++++..++.. +. -.+||. ..|.+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V--fG-G~egHr---deVLS 186 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV--FG-GVEGHR---DEVLS 186 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE--ec-cccccc---CcEEE
Confidence 99999999999999999999999999999999964 6899999999999999999544321 11 245676 79999
Q ss_pred EEEecCCcEEEE-EecCcEEEEeCCCCce------eeeec--------------------CCCCCCCeEEEEEccCCCEE
Q 006126 513 IQFHPDQIHLLS-IHEGQIDVYEAPTLNH------TSQLV--------------------PDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 513 ~~~sp~~~~l~~-~~d~~i~iwd~~~~~~------~~~~~--------------------~~~~~~~v~~~~~s~dg~~l 565 (660)
+.|+++|.++++ |.|.++++|++...+. ...+. ...|...|-|+.|- |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 999999999999 6999999999973221 11111 11234445555553 6889
Q ss_pred EEEecCCeEEEEEC-CCCeeEEEeecccc--cCCCC---cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 566 YVSCKSGHVKVFDT-STLELRCQINLTAY--AQPGT---ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 566 ~sg~~dg~I~iwd~-~~~~~~~~~~~~~~--~~~gh---~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++=+-++.|..|.. +-++.+....+... ...|+ ....++-+..+|.| -+++||.|...|+|.+||+...++
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCC
Confidence 99888999999987 22221111110000 00000 13346667889999 789999999999999999998766
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=7.4e-17 Score=171.80 Aligned_cols=303 Identities=13% Similarity=0.073 Sum_probs=211.9
Q ss_pred CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 006126 261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLW 338 (660)
Q Consensus 261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw 338 (660)
++.....+.|+|-...++++.....|++||.+. ...+..+... ..-...|..+.+-. |...+++|+.||.|+||
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~---~~~l~~F~n~-~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK---GRLLNGFDNG-AFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEeccc---CceeccccCC-CCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 334456678999999999999999999999986 2333332211 11346788888875 45689999999999999
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CC
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP 414 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~ 414 (660)
+--.... ....-+.-|..-++.... ..+.-.-+.|. ..+|++++ -..|+|||.....++..+. +.
T Consensus 1139 k~y~~~~-----~~~eLVTaw~~Ls~~~~~------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1139 KDYADKW-----KKPELVTAWSSLSDQLPG------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred ccccccc-----CCceeEEeeccccccCcc------CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence 8433210 111123345544433221 11111345666 45555555 6899999999888887776 44
Q ss_pred CCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCC--eEEEEEeCCCCE-EEEEeCCCcEEEEEcC
Q 006126 415 PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR--ITCLAYSLSLNV-LVSSGADAQLCVWDAV 486 (660)
Q Consensus 415 ~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~--v~~l~~sp~~~~-l~s~s~dg~i~vwd~~ 486 (660)
...|+++.-+-. | .|++|..||.|++||.+... .+..++.|+.. |..+.+.+.|-. |++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 556676665443 4 99999999999999987543 46777888877 999999987755 9999999999999999
Q ss_pred CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-----CCCCCeEEEEEccC
Q 006126 487 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCD 561 (660)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d 561 (660)
......... +.. |....+..+++..++....+++|..+.|+||++ .|+.+..+... ...+.+.+++|+|-
T Consensus 1288 ~~~~e~~~~---iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLT---IVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcccccce---eee-ccccCccceeeeeccCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecch
Confidence 842221111 111 110003589999999999999976699999998 45555444322 12567899999999
Q ss_pred CCEEEEEecCCeEEEEECCCCe
Q 006126 562 GKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 562 g~~l~sg~~dg~I~iwd~~~~~ 583 (660)
.-++|+|+.|..|.||....++
T Consensus 1363 ~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hHhhhhccCCceEEEeecCCcC
Confidence 9999999999999999877654
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.9e-17 Score=156.84 Aligned_cols=312 Identities=11% Similarity=0.053 Sum_probs=213.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|.++.||.++++|++|+.|..+++|.++..-. .++.+.+... ...|...|.|++|. +
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~~-~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGVM-EHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCceec-cCccccceEEEEEccCC
Confidence 4999999999999999999999999999999764321 1111222211 11467899999999 6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-eeeE--eeccCCCe
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAK--LKGHQNRI 459 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-~~~~--~~~~~~~v 459 (660)
.++.+|. +++|..-|+++.+.+..+.. ..+.|+.+..+|.. .|++.+.++.|.+||.+..+ .+.. +.......
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 6788888 89999999999888777653 23589999999998 99999999999999998765 2222 22244567
Q ss_pred EEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeee--eeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeC
Q 006126 460 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 535 (660)
Q Consensus 460 ~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~ 535 (660)
..+.|+|.. .+|++.+..+-+.+||++.... ++.. ...+-......-.++.|+|+|..+++- ....=.+||+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~----~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQAR----PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccc----hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 788899954 5677888889999999987431 1110 001100000133578899999999884 5555667888
Q ss_pred CCCceeeeecCCCC------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE----------------Eeecccc
Q 006126 536 PTLNHTSQLVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC----------------QINLTAY 593 (660)
Q Consensus 536 ~~~~~~~~~~~~~~------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~----------------~~~~~~~ 593 (660)
.+.++. .++..+. ...+.+++|-.|. .+++|+.+-.|++|.+....-.. .+.....
T Consensus 274 ~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 775542 3332211 2345567776554 49999999999999975321100 1111112
Q ss_pred cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCcccc
Q 006126 594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSR 648 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~~ 648 (660)
+..|| ..-++ .|.|+| ...+|++.|-...++||....-. |....|.|-.
T Consensus 352 VLrGH-RSv~N--QVRF~~-H~~~l~SSGVE~~~KlWS~~r~P--~~~D~~~E~~ 400 (609)
T KOG4227|consen 352 VLRGH-RSVPN--QVRFSQ-HNNLLVSSGVENSFKLWSDHRLP--WSYDLPFERR 400 (609)
T ss_pred EEecc-ccccc--ceeecC-CcceEeccchhhheeccccccCC--cccCCccccC
Confidence 24466 33344 899999 78899999999999999875432 6555554443
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.2e-18 Score=168.17 Aligned_cols=292 Identities=14% Similarity=0.164 Sum_probs=218.3
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|..+.|...|..|++||.|..|.+|||......+. +..||...|..-.|-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------FESGHCNNVFQAKFIPFS 197 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccc----------------------cccccccchhhhhccCCC
Confidence 3999999999999999999999999999999987764221 222677777766665
Q ss_pred -CCEEEEEe-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee---cc
Q 006126 386 -GSHLFSAS-GGKISIFSLET-FQT--LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK---GH 455 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~-~~~--~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~---~~ 455 (660)
...+++++ ||.|++=.+.. +.+ ...+..|.+.|.-++.-|+. .|.+++.|+.+.-+|++++.....+. .+
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 55688888 99999987643 333 33456899999999999998 89999999999999999876544332 23
Q ss_pred CC---CeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeee------eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126 456 QN---RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 525 (660)
Q Consensus 456 ~~---~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 525 (660)
.. ..+.++.+|... .+++++.|..+++||.+.-... ...+...+.. ..+ ..|++++|+.++.-++++
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~--v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE-DDP--VNITGLVYSHDGSELLAS 354 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc-cCc--ccceeEEecCCccceeee
Confidence 33 567888899654 7999999999999999874321 1111111111 122 579999999777776665
Q ss_pred -ecCcEEEEeCCC--C----------ceee-eecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 526 -HEGQIDVYEAPT--L----------NHTS-QLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 526 -~d~~i~iwd~~~--~----------~~~~-~~~~~~~~~~v~~~~~-s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.|-.|+++.-.. | ..+. .++++.....|..+-| .|...|+++|+.-|.|.||+-.+++++..+..
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 888999995432 2 1222 2555444566777776 58899999999999999999999998887763
Q ss_pred ccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
- .+ -|.|+.-|| .-..||++|-|.-|+||.+.+.+
T Consensus 435 D--------r~--VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 435 D--------RH--VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred c--------cc--eEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 1 22 345999999 67899999999999999996554
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.1e-17 Score=158.39 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=164.3
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEE
Q 006126 374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 440 (660)
Q Consensus 374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~i 440 (660)
||.++|..++|+ +..||+|+ |.+|.||.+..+ +++..+.+|...|.-++|+|.. .|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 899999999999 77899999 899999998654 4566788999999999999988 8999999999999
Q ss_pred EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
||+.+|+.+-++. |...|.++.|+.||.+|++++.|..|+|||.++++.+... .+|.+ ..-..+.|-.+|.
T Consensus 159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK 229 (472)
T ss_pred EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence 9999999888888 9999999999999999999999999999999997654322 34443 4556788999999
Q ss_pred EEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCe
Q 006126 521 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLE 583 (660)
Q Consensus 521 ~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iwd~~~~~ 583 (660)
.+.+| ++..+-+||..+.+.-..+..-+....|.---|++|.+.++. |-.|+.||-|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55554 578899999876543322222233666777778899888875 4458999999988755
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=150.81 Aligned_cols=284 Identities=14% Similarity=0.062 Sum_probs=191.4
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
|+-++++|.. +.+.+|.. ..+|.+|..-|.|++|++++.. .... +... |...|..+.--|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa------------~~rL~sg~~~G~V~~w~lqt~r---~~~~--~r~~-g~~~it~lq~~p~ 67 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQA------------NERLMSGLSVGIVKMWVLQTER---DLPL--IRLF-GRLFITNLQSIPN 67 (323)
T ss_pred CeeEeccccchheehhhcc------------chhhhcccccceEEEEEeecCc---cchh--hhhh-ccceeeceeecCC
Confidence 4445556655 56654442 3358889999999999998622 2222 2211 6888999999998
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C----------CEEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G----------SHLFS 391 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~----------~~l~s 391 (660)
+. +.+-+.|+.+.+|++........ |.-.++++.|. . ..++.
T Consensus 68 d~-l~tqgRd~~L~lw~ia~s~~i~i--------------------------~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 68 DS-LDTQGRDPLLILWTIAYSAFISI--------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred cc-hhhcCCCceEEEEEccCcceEEE--------------------------eeeeccccccccceeccCCCcchhheec
Confidence 54 88999999999999876543111 22222222222 0 11111
Q ss_pred EeCC--cEEEEECCCCeEEEEEc----CCCCCeEEEEEcCC-C---eEEEEeCCCeEEEEeCCCCce----------eeE
Q 006126 392 ASGG--KISIFSLETFQTLATFA----NPPPIATYFILLPQ-D---LFAFGFDDSSILVHCPCTKKT----------KAK 451 (660)
Q Consensus 392 ~~dg--~I~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~-~---~l~s~~~d~~I~iwd~~~~~~----------~~~ 451 (660)
-+.| .+.+-|......++... +..+.+.|..+..+ + .+++|..+|.+.+||+.++.. ...
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 1111 12222322222222221 23455667665443 3 678899999999999998733 333
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 530 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i 530 (660)
...|..+|.++.|.+.-..=++|+.+..+..|.+...... ..+.....-.. -.|..+..-||++.+++ |.|+.|
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--lq~~~e~~lkn---pGv~gvrIRpD~KIlATAGWD~Ri 275 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--LQIRKEITLKN---PGVSGVRIRPDGKILATAGWDHRI 275 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc--ccccceEEecC---CCccceEEccCCcEEeecccCCcE
Confidence 4568999999999886666778888889999988753211 11110111112 36888999999999999 799999
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
|||..++..++..+.- |...|.+++|+|+...+|+++.|+.|.+|++
T Consensus 276 RVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 276 RVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999998875 6899999999999999999999999999986
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.2e-17 Score=165.42 Aligned_cols=257 Identities=14% Similarity=0.159 Sum_probs=184.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 389 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l 389 (660)
|.+.|..++|.|....|++++.||++++|+++.... +..
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----------------------------s~~------------ 331 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----------------------------SAE------------ 331 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----------------------------ccc------------
Confidence 788888888888888888999999998888733110 100
Q ss_pred EEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC----------ceeeEeeccCCC
Q 006126 390 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----------KTKAKLKGHQNR 458 (660)
Q Consensus 390 ~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~----------~~~~~~~~~~~~ 458 (660)
..-+++.+|.+|.++|.|+++.+++ .+++|+-||+|+.|++... .....+.||.+.
T Consensus 332 -------------~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 332 -------------KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred -------------cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 1135677888999999999999999 9999999999999954311 234567899999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCC
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAP 536 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~-~d~~i~iwd~~ 536 (660)
|+.+++|+....|++++.||+++.|+...... . .+. ....| +...++.+-... ...+++ .-+.--++|+.
T Consensus 399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~--~f~-~~~e~----g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-C--TFG-EPKEH----GYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eeeeeecccccceeeecCCceEEeeccCCcCc-c--ccC-Ccccc----CCcceEeeccchhHhhhhhcccccccchhhh
Confidence 99999999999999999999999999887443 0 111 12222 234455554333 122222 33333344444
Q ss_pred CCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEe
Q 006126 537 TLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 611 (660)
Q Consensus 537 ~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 611 (660)
.+..+..+.... ....+..+.+.|.+.+.+++.+|+.|+++|..+++++.....+ .+.++++++.
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~----------~~svtslai~ 540 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH----------KDSVTSLAID 540 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec----------cceecceeec
Confidence 444444332211 1345777889999999999999999999999999998876633 3445699999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 612 PLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
| +|.+|++++.||.|++|++....+.-
T Consensus 541 ~-ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 541 P-NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred C-CCceEEeecCCceeehhhccchheee
Confidence 9 89999999999999999998776643
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=2.7e-15 Score=154.57 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=173.3
Q ss_pred EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeE
Q 006126 278 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMES 356 (660)
Q Consensus 278 ~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~ 356 (660)
++...++.|.+|++...........+. +.+....++++|++++|++++. ++.|.+|++......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l---------- 70 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL---------- 70 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce----------
Confidence 344678999999996311111222221 3456778999999999877754 788888887522110
Q ss_pred EEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-Ce---EEEEEcCCCCCeEEEEEcCCC-
Q 006126 357 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ---TLATFANPPPIATYFILLPQD- 427 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~---~~~~~~~~~~~v~~v~~sp~~- 427 (660)
..+... ........++++ ++++++++ ++.|.+|++.+ +. .+..+. +.....+++++|++
T Consensus 71 --------~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 --------TFAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNR 138 (330)
T ss_pred --------EEeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCC
Confidence 001100 122345678888 77888777 78999999974 32 223232 22345678899999
Q ss_pred eE-EEEeCCCeEEEEeCCCCceeeE-----ee-ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Ceeeeceeee
Q 006126 428 LF-AFGFDDSSILVHCPCTKKTKAK-----LK-GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFLH 497 (660)
Q Consensus 428 ~l-~s~~~d~~I~iwd~~~~~~~~~-----~~-~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~~~~ 497 (660)
.+ ++...++.|.+||+.+...+.. .. ........+.|+|+|++++++.. +++|.+||+.. ++......+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 55 5566779999999976332211 11 12234678899999999988876 89999999974 2221111111
Q ss_pred eeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCCCEEEEEec-
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCK- 570 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~- 570 (660)
....... .......+.++|+|++++++ .++.|.+|++.... .+..+.. ......+.|+|||++|+++..
T Consensus 219 ~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 219 MMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred cCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEcc
Confidence 1111100 00234468999999999985 56899999986432 2222221 234557899999999998776
Q ss_pred CCeEEEEECC
Q 006126 571 SGHVKVFDTS 580 (660)
Q Consensus 571 dg~I~iwd~~ 580 (660)
++.|.+|+++
T Consensus 295 ~~~v~v~~~~ 304 (330)
T PRK11028 295 SHHISVYEID 304 (330)
T ss_pred CCcEEEEEEc
Confidence 8999999875
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=3.5e-17 Score=150.75 Aligned_cols=226 Identities=13% Similarity=0.205 Sum_probs=171.5
Q ss_pred CCcEEEEECCCCe--E-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-------eEEEEeCCCC---------ceeeEe
Q 006126 394 GGKISIFSLETFQ--T-LATFANPPPIATYFILLPQD--LFAFGFDDS-------SILVHCPCTK---------KTKAKL 452 (660)
Q Consensus 394 dg~I~iwd~~~~~--~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-------~I~iwd~~~~---------~~~~~~ 452 (660)
|+.|.+.++..+. . .+.|..+.+.|+.++-+|.. .|+++..+. .+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4677777765432 2 33466788899999999987 677766532 5789987532 233344
Q ss_pred e-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEEEecCc
Q 006126 453 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSIHEGQ 529 (660)
Q Consensus 453 ~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~d~~ 529 (660)
. .+-+.|.|+.|.|++..+++.. |..|.+|++..+..+..........++. ...++-+|+| +|..+++..|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~---~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR---HSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc---ceecccccCCCCccceEEEeCCCc
Confidence 3 3556899999999999999876 8999999999876532222211222333 4677888998 899999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEE
Q 006126 530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
+..||+++.++...+.. .|...|..+.|+|+.+ +|++++.||.|+|||.+. ..++..+. +| .+.++ +
T Consensus 195 l~~~D~RT~~~~~sI~d-AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~H-sHWvW--~ 263 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIED-AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GH-SHWVW--A 263 (370)
T ss_pred EEEEEccchhhhcchhh-hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CC-ceEEE--E
Confidence 99999999988877765 5788999999999876 677899999999999985 44555555 44 67777 9
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 608 IAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
|.|+|...+++++||.|..|.+|...+
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccc
Confidence 999998788999999999999998754
No 180
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=3.6e-16 Score=146.58 Aligned_cols=302 Identities=14% Similarity=0.124 Sum_probs=201.2
Q ss_pred EecCCCCEEEEE-eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEE-EECCCcEEEEeccCCcee
Q 006126 269 TSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 269 ~~spdg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s-~s~dg~i~vw~~~~~~~~ 346 (660)
.|+.|.-+++++ ..|+.|.+|++.. .+.... +.. -..++..+.|||||+.++. ...|-.|.||.+.+.+.
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Q----pew~ck-Ide--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~- 126 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQ----PEWYCK-IDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG- 126 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeec----ceeEEE-ecc--CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-
Confidence 555666555443 4577889999873 333222 222 3778999999999976655 44588999998766543
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--C--CcEEEEECCCCeEEEEEcCCCCCeEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATY 420 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--d--g~I~iwd~~~~~~~~~~~~~~~~v~~ 420 (660)
..++ ..+..+..++|+ |++.+.++ | ..+.+..-.....++.+....-..+.
T Consensus 127 ------------------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 127 ------------------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred ------------------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 1121 234456788888 77777776 4 34555544455566667666777789
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece-----
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK----- 494 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~----- 494 (660)
+.|+||| .++ +||.--.-.+..+. ..-.+..++|+|.+++|++|+.|+.+|+.+--+++.....
T Consensus 184 ieWsPdg~~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 184 IEWSPDGNWLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred ceECCCCcEEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 9999998 665 45532111111121 2346888999999999999999999988655443321100
Q ss_pred ----------------------ee----------------------------eeee--eccCCCCCCeEEEEEecCCcEE
Q 006126 495 ----------------------FL----------------------------HSFQ--TGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 495 ----------------------~~----------------------------~~~~--~~~~~~~~~v~~~~~sp~~~~l 522 (660)
++ ++.. ....++.-.+.-++|++|..++
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~ 333 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA 333 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE
Confidence 00 0000 0000112356679999999999
Q ss_pred EEEec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 523 LSIHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 523 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++-.| +.+.+||++..+....+. ...+|....|+|....|+.+.....+++|.......+..-
T Consensus 334 aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP----------- 399 (447)
T KOG4497|consen 334 ATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP----------- 399 (447)
T ss_pred eeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----------
Confidence 99544 679999998877665553 3788999999999988888877788999998875555432
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCe
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGR 626 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~ 626 (660)
..+.++..+.|+- +|..++.++.|.-
T Consensus 400 ~~GF~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecC-CCcEEEEEcCCce
Confidence 2225566999999 8999999999864
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=8e-17 Score=148.41 Aligned_cols=257 Identities=14% Similarity=0.159 Sum_probs=182.7
Q ss_pred eecCCCCceeeEecCCCC-EEEEEeCC-------CcEEEEeccCcCCCcceeeee----cCCCCCCCCeEEEEEecCCCE
Q 006126 258 CFNDNNQSRESTSLPDAD-SAVCAKSL-------EKSVNLKLQLINEPSECRTLL----LPDNSFGGRVVRLIYSHSGDF 325 (660)
Q Consensus 258 ~~~~~~~~~~~~~spdg~-~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~----l~~~~h~~~V~~~~~spdg~~ 325 (660)
+|.+......+.-+|-.+ .|+++..+ ..+.||.+.....+.....+. |+. .|-+.|.|+.|.|++..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCe
Confidence 334444445456677655 44454432 236899997644443222211 221 24568999999999999
Q ss_pred EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEeCCcEEEEE
Q 006126 326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFS 401 (660)
Q Consensus 326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~dg~I~iwd 401 (660)
+++-. |..|.+|+++....+.. ..... ...+|....++-+|+ ++.+++.+|+++..||
T Consensus 138 lasm~-dn~i~l~~l~ess~~va-----------ev~ss------~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVA-----------EVLSS------ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred eEEec-cCceEEEEcccCcchhe-----------eeccc------ccccccceecccccCCCCccceEEEeCCCcEEEEE
Confidence 88876 88899999887765211 00000 000355567777888 7889999999999999
Q ss_pred CCCCeEEEEEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCC-CCEEEEEeC
Q 006126 402 LETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVSSGA 476 (660)
Q Consensus 402 ~~~~~~~~~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~ 476 (660)
+++.++...+. .|...|..+.|+|+- +|++|++||.|++||.+. ..+++.+.+|...|+++.|+|. ..++++|+.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 99988777665 788899999999998 999999999999999875 4578889999999999999994 467889999
Q ss_pred CCcEEEEEcCCCee-------------------eeceeeee----eeeccCCCCCCeEEEEEecCCcEEEE--EecCcEE
Q 006126 477 DAQLCVWDAVGWKK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQID 531 (660)
Q Consensus 477 dg~i~vwd~~~~~~-------------------~~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~ 531 (660)
|..|.+|...+-.. .+.++++. .+..|. ..|++++|+.-..++++ +.||.+.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence 99999997654210 00112221 344566 68999999988888776 5899988
Q ss_pred EEeCC
Q 006126 532 VYEAP 536 (660)
Q Consensus 532 iwd~~ 536 (660)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 86654
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.4e-16 Score=166.03 Aligned_cols=295 Identities=15% Similarity=0.141 Sum_probs=202.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----C
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----G 386 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~ 386 (660)
..+...+.|+|-...++++...-.|+|||++.+.... -|+. +. .....|+.+.+- .
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~----------~F~n--~~--------~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLN----------GFDN--GA--------FPDTRVSDLELINEQDD 1123 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceec----------cccC--CC--------CCCCccceeeeecccch
Confidence 3356678899988889999888899999998776411 1111 10 245668888887 4
Q ss_pred CEEEEEe-CCcEEEEECC-----CCeEEEEEcCC-------CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 387 SHLFSAS-GGKISIFSLE-----TFQTLATFANP-------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~-----~~~~~~~~~~~-------~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
..+++|+ ||.|+||+-. +.+.+..+.+- .+.-.-+.|.... .|+++|+-..|+|||....+++..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 4788888 9999999742 22334333211 1111346777766 8888888899999999988777666
Q ss_pred ec-cCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE-EEE-EecC
Q 006126 453 KG-HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-IHEG 528 (660)
Q Consensus 453 ~~-~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~-~~d~ 528 (660)
.. ....|+++.-+- .|+.+++|..||.|++||.+..... ..+. ....|+.. ..|..+.+.+.|-- |++ +.+|
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~-~~R~h~~~-~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVC-VYREHNDV-EPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc--ccce-eecccCCc-ccceeEEeecCCCcceeeeccCC
Confidence 43 445666665433 5799999999999999999875432 1222 34455520 23889999886654 666 6999
Q ss_pred cEEEEeCCCCceeeeecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc-cccCCCCcCcccc
Q 006126 529 QIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQPGTISLELY 604 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~-~~~~~gh~~~~v~ 604 (660)
.|++||++.......+....| ++..+++..+++...+|+|+. +.|+||++...+ +..+... .+. |.....
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs-- 1353 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGS-- 1353 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCC--
Confidence 999999987432222221112 235999999999999999998 999999987543 4444332 121 111222
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+.|++||| ..-++|.|+.|.+|.||....++
T Consensus 1354 ~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 35999999 67889999999999999987654
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-16 Score=157.66 Aligned_cols=209 Identities=16% Similarity=0.194 Sum_probs=148.7
Q ss_pred CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 308 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+.... +..||...|.++.|-
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs----------------------I~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS----------------------ISTGHTANIFSVKFVPY 104 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeee----------------------eecccccceeEEeeecc
Confidence 35999999999999999999999999999998654433111 122899999999998
Q ss_pred --CCEEEEEe-CCcEEEEECCC----------CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCcee-
Q 006126 386 --GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK- 449 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~~----------~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~- 449 (660)
+..+++|. |..|+++|+.. .+....+..|...|..++..|++ .+.+++.||+|+-+|++.....
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 55777777 99999999974 12334456788899999999999 8999999999999999863211
Q ss_pred ---------eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC--------eeeec-----eeeeeeeeccCCC
Q 006126 450 ---------AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW--------KKLCS-----KFLHSFQTGLVPE 506 (660)
Q Consensus 450 ---------~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~--------~~~~~-----~~~~~~~~~~~~~ 506 (660)
..+...--...|+..+|. ..+|++|+.|-..++||.+.- ..... .++.....+|...
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 111112234678999994 567999999999999995421 10000 0122112222200
Q ss_pred C--------CCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC
Q 006126 507 T--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 538 (660)
Q Consensus 507 ~--------~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~ 538 (660)
+ ..++-+.|+|+|.-|+++ ....|+++|+..+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 0 125668999999999987 4557999997543
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=6.3e-17 Score=163.32 Aligned_cols=249 Identities=18% Similarity=0.167 Sum_probs=181.6
Q ss_pred EecCCCCEEEE--EeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126 269 TSLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 269 ~~spdg~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
.|..+.+++|. ++..|.|-|+++.. ++++-.-.+++-.....|..+.|.| |...||.++.||.|++|.+..+..
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 45555566653 55679999999986 5555444444444677899999999 667899999999999998766543
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLP 425 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 425 (660)
.. ...++...+..|...|+++.|+|
T Consensus 663 ~e-------------------------------------------------------~~~tPe~~lt~h~eKI~slRfHP 687 (1012)
T KOG1445|consen 663 PE-------------------------------------------------------NEMTPEKILTIHGEKITSLRFHP 687 (1012)
T ss_pred Cc-------------------------------------------------------ccCCcceeeecccceEEEEEecc
Confidence 00 01234455678889999999999
Q ss_pred CC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 426 QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 426 ~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
-. .|++++.|.+|++||+.+++....+.+|.+.|.+++|+|+|+.+++.+.||+|++|..++++ .++ .++.
T Consensus 688 LAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv---~Eg~ 760 (1012)
T KOG1445|consen 688 LAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPV---YEGK 760 (1012)
T ss_pred hhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Ccc---ccCC
Confidence 76 99999999999999999999999999999999999999999999999999999999998854 232 2333
Q ss_pred CCCCCCeEEEEEecCCcEEEE-Eec----CcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEE
Q 006126 504 VPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVK 575 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~-~~d----~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~ 575 (660)
.+....-..+.|.-||+++++ |.| ..|.+||..+- .++.+...+ ....+.--.+.+|.. ++++|-.|..|+
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec-ccCccccccccCCCceEEEecCCCceEE
Confidence 221134456889999999988 544 57999997653 333333221 111222223455655 566788899999
Q ss_pred EEECCCCe
Q 006126 576 VFDTSTLE 583 (660)
Q Consensus 576 iwd~~~~~ 583 (660)
+|.+-...
T Consensus 840 ~yEv~~es 847 (1012)
T KOG1445|consen 840 MYEVIYES 847 (1012)
T ss_pred EEEecCCC
Confidence 99986544
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.8e-16 Score=150.80 Aligned_cols=230 Identities=12% Similarity=0.123 Sum_probs=169.7
Q ss_pred CCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126 308 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 385 (660)
Q Consensus 308 ~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 385 (660)
.||+++|..++|+| +...||+||.|.+|.||++..+..... . + ..+..+ .||...|--+.|+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------l-t-epvv~L--~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------L-T-EPVVEL--YGHQRRVGLVQWHP 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------c-c-cceEEE--eecceeEEEEeecc
Confidence 56999999999999 556789999999999999877654111 1 1 111111 2899999999999
Q ss_pred --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-CeE
Q 006126 386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT 460 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-~v~ 460 (660)
.+.|++++ |.+|.+|++.+|+.+-++. |...|.++.|+.|| ++++.+.|+.|+|||.++++.+..-.+|.+ .-.
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 77788877 9999999999999988887 99999999999999 999999999999999999999988777765 334
Q ss_pred EEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126 461 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 535 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~ 535 (660)
.+.|-.+|..+-+|. .+..+-+||...-+.- ..+++ . ... +.|.---|.||.+.++. | .|+.|+-|.+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP--~~~~e-l-DtS---nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP--IALQE-L-DTS---NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCc--ceeEE-e-ccC---CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 556888888555553 3678999998773211 11111 1 111 45666677888888877 6 8999999999
Q ss_pred CCCceeeeecC-CCCCCCeEEEEEccC
Q 006126 536 PTLNHTSQLVP-DKMDLPITYATYSCD 561 (660)
Q Consensus 536 ~~~~~~~~~~~-~~~~~~v~~~~~s~d 561 (660)
.+..+...+.. -....+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 76653222211 012444555666654
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=5.8e-15 Score=152.12 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=171.4
Q ss_pred EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECC
Q 006126 328 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE 403 (660)
Q Consensus 328 s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~ 403 (660)
+...++.|.+|++.+... -..++.. .+.+....++++ +++|++++ ++.|.+|++.
T Consensus 7 ~~~~~~~I~~~~~~~~g~------------------l~~~~~~---~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGA------------------LTLLQVV---DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EcCCCCCEEEEEECCCCc------------------eeeeeEE---ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 345689999999853211 0011111 133446677888 77887765 6899999996
Q ss_pred -CCeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCC-Cc---eeeEeeccCCCeEEEEEeCCCCEEEEE
Q 006126 404 -TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT-KK---TKAKLKGHQNRITCLAYSLSLNVLVSS 474 (660)
Q Consensus 404 -~~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~-~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~ 474 (660)
+++. ..... .......++++|++ .+++++ .++.|.+|++.+ +. .+..+. +.....+++++|+|++++++
T Consensus 66 ~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 66 DDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred CCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence 3433 22222 23345689999999 666655 588999999864 32 222222 23446778899999988655
Q ss_pred e-CCCcEEEEEcCCCeeeec---eeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--Cc--eeeee
Q 006126 475 G-ADAQLCVWDAVGWKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LN--HTSQL 544 (660)
Q Consensus 475 s-~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~--~~--~~~~~ 544 (660)
+ .++.|.+||+.+...... .... ...+ .....++|+|+|++++++ .+++|.+||+.. ++ .+..+
T Consensus 144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g-----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 144 CLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEG-----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred eCCCCEEEEEEECCCCcccccCCCcee-cCCC-----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 5 569999999986321111 0111 1122 346789999999999884 479999999973 32 23333
Q ss_pred cCC----CCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 545 VPD----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 545 ~~~----~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
... .+......+.|+|+|++++++.. ++.|.+|++........+..+ .+.| .....+.++| ||++|+
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~~-----~~p~~~~~~~-dg~~l~ 289 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPTE-----TQPRGFNIDH-SGKYLI 289 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--Eecc-----ccCCceEECC-CCCEEE
Confidence 211 01223346889999999999865 689999999654321121111 1111 1233789999 899988
Q ss_pred EEeC-CCeEEEEeCCCC
Q 006126 620 LGLT-NGRVHVIEPLES 635 (660)
Q Consensus 620 s~s~-Dg~v~iw~~~~~ 635 (660)
+++. +++|.+|++...
T Consensus 290 va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 290 AAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEEccCCcEEEEEEcCC
Confidence 7775 899999988643
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.3e-14 Score=138.64 Aligned_cols=236 Identities=13% Similarity=0.169 Sum_probs=174.5
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 390 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~ 390 (660)
...+..+.|..+...|..|+.||. ++|+...... +... ......|-.+-|+..++|
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--------------------~~~~---~~~~~~IvEmLFSSSLva 60 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--------------------CFSK---DTEGVSIVEMLFSSSLVA 60 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH--------------------hhcc---cCCCeEEEEeecccceeE
Confidence 456777779999998888888875 3454433221 0000 012233555556677777
Q ss_pred EEe-C--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec---cCCCeEEEEE
Q 006126 391 SAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLAY 464 (660)
Q Consensus 391 s~~-d--g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~---~~~~v~~l~~ 464 (660)
..+ + ..+++++.+.+..+..+. ....|.++.++.+ +|+++-.+. |+|||+++.+.++++.. +...+.++.+
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred EEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence 777 4 469999998877776654 4566888888777 455555444 99999999999888754 4455666666
Q ss_pred eCCCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC-cEEEEeCCCCce
Q 006126 465 SLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPTLNH 540 (660)
Q Consensus 465 sp~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~-~i~iwd~~~~~~ 540 (660)
++.+.+++.-+ ..|.|.+||..+ -.++. ....|. +.+.+++|+++|.+||++ ..| .|||+.+.+|+.
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n-----l~~v~-~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN-----LQPVN-TINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc-----ceeee-EEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccE
Confidence 76777888643 368999999988 34444 455788 799999999999999995 445 489999999999
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
+..+.-+--...|.+++|+||+++|++.+..++|+||.+...
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 999876544667899999999999999999999999998653
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=8.4e-17 Score=161.30 Aligned_cols=274 Identities=11% Similarity=0.039 Sum_probs=185.1
Q ss_pred eecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcC---CCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCc
Q 006126 258 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN---EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 334 (660)
Q Consensus 258 ~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~ 334 (660)
+-+...|.+...|.|-...|++++.||++++|+++... .......+++. +|.++|.|++++++++.+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr--aH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR--AHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe--cccCceEEEEecCCceEEEeeccCce
Confidence 44455566667888999999999999999999994321 11222334454 49999999999999999999999999
Q ss_pred EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCC
Q 006126 335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~ 414 (660)
|+.|++..+.- -+|. + |. ......+.+|
T Consensus 368 I~~w~~p~n~d------------p~ds-------------~-------------------------dp--~vl~~~l~Gh 395 (577)
T KOG0642|consen 368 IRCWNLPPNQD------------PDDS-------------Y-------------------------DP--SVLSGTLLGH 395 (577)
T ss_pred eeeeccCCCCC------------cccc-------------c-------------------------Cc--chhccceecc
Confidence 99998763321 0110 1 00 0122345688
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCee
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKK 490 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~ 490 (660)
...|+.+++++.. .|++++.||+++.|+...... .++... .+.-.++.+-... ...++...-+.-.++++.....
T Consensus 396 tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~ 474 (577)
T KOG0642|consen 396 TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD 474 (577)
T ss_pred ccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence 8889999999988 999999999999999876655 333321 2233444443222 1122222222222334433221
Q ss_pred eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
.....-........ ...+.-+.++|.+...+++ .|+.|+++|..+++++..... |...++++++.|+|-+|++|+
T Consensus 475 ~~~~~s~~~~~~~~--~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 475 LLIFESSASPGPRR--YPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred eeeccccCCCcccc--cCccceEEecCCCCeeEecccCCceecccccccccchheee--ccceecceeecCCCceEEeec
Confidence 11111110000000 0357778899999888885 889999999999999887754 689999999999999999999
Q ss_pred cCCeEEEEECCCCeeEEEeec
Q 006126 570 KSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 570 ~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.||.+++|.+....++....+
T Consensus 551 ~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred CCceeehhhccchheeecccc
Confidence 999999999987766655443
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1e-15 Score=165.74 Aligned_cols=251 Identities=13% Similarity=0.185 Sum_probs=169.6
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
.|...|..++.++.. .++++||.||+|++|+...-... .....+...|+. -...+.++...
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~~s~rS~ltys~-------------~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---GGSARSELTYSP-------------EGSRVEKVTMCGN 1109 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---cceeeeeEEEec-------------cCCceEEEEeccC
Confidence 378888888888755 99999999999999997654321 011111223332 34556666666
Q ss_pred CCEEEEEe-CCcEEEEECCCC-------eEEEEEcCC--CCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 386 GSHLFSAS-GGKISIFSLETF-------QTLATFANP--PPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~--~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
++.+|.++ ||.|++.+++.. .+.+....+ ...|..-++.... .++.+...+.|..||+++......+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 88888888 999999998752 122222222 2223333443332 7888889999999999887665554
Q ss_pred ec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC---cEEEE-E-
Q 006126 453 KG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I- 525 (660)
Q Consensus 453 ~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~-~- 525 (660)
+. ..+.|++++.+|.+.++++|+..|.+.+||++-+..+.. ...++. .++..+..+|-. ...++ +
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s-----w~~P~~---~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS-----WEHPAR---APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec-----ccCccc---CCcceEEeeccCCCCceEEEecc
Confidence 42 457899999999999999999999999999998544332 222232 578888877643 34444 3
Q ss_pred -ecCcEEEEeCCCCceeeeecCCC-----------------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 526 -HEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 526 -~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
..+.|.+|++.+|.+..++.... +.-.....++..-+.++++|+.|..|+.||....+
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 46789999999987766654431 01112233344445789999999999999976543
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=148.85 Aligned_cols=276 Identities=9% Similarity=0.089 Sum_probs=184.7
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec--CCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 352 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~ 352 (660)
..+|++-.+|.|++||..++. .+.. +. +|...+..+.|.. ....+.+++.||+|++||+........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---~l~~--fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---LLEE--FK--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---hhhe--ec--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 568889999999999998522 2222 22 3778888888877 456788999999999999876654111
Q ss_pred ceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEe-----CCcEEEEECCCCeE-EEEE-cCCCCCeEEEE
Q 006126 353 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFI 422 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~-----dg~I~iwd~~~~~~-~~~~-~~~~~~v~~v~ 422 (660)
..|. ++. .+..|++.. ++.+++|. +-.|.+||++..+. ++.+ ..|...|+++.
T Consensus 110 ----~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 110 ----ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred ----eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 1121 233 456677766 56666665 35799999988665 5554 48999999999
Q ss_pred EcCCC--eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 423 LLPQD--LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
|+|.+ +|++|+.||.|.+||+.... .+.....|...|.++.|..++ +.+.+-+.+++..+|+++.+........
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 99998 99999999999999987542 122223377889999999877 4588889999999999998764322222
Q ss_pred eeeeeccCCC---CCCeEEEEEec-CCcEEEE-Ee-cCcEEEEeCC---CC---ceeeeecCCCCCCCeEEEEEccCCCE
Q 006126 497 HSFQTGLVPE---TTIVNHIQFHP-DQIHLLS-IH-EGQIDVYEAP---TL---NHTSQLVPDKMDLPITYATYSCDGKC 564 (660)
Q Consensus 497 ~~~~~~~~~~---~~~v~~~~~sp-~~~~l~~-~~-d~~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~dg~~ 564 (660)
.....+-... -..+.. +.+| ++...+. +. -+...++-+. ++ +.+..+.+ +|...|.++.|...+.+
T Consensus 253 ~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDV 330 (376)
T ss_pred ccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccce
Confidence 1011000000 000111 1223 3333333 33 3444444332 22 33334433 46778899999999999
Q ss_pred EEEEecCCeEEEEECC
Q 006126 565 IYVSCKSGHVKVFDTS 580 (660)
Q Consensus 565 l~sg~~dg~I~iwd~~ 580 (660)
+++|++||.+.+|...
T Consensus 331 l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeccCCCceEEEEecC
Confidence 9999999999999963
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=4.7e-17 Score=148.18 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=178.1
Q ss_pred CCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126 374 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 374 ~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
+|.+.|+++.|. +++|.+|. .|.|++|++.+.+....++ .+...|+.+..-|++.+.+-+.|..+.+|++.-+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 688999999999 88899999 8999999999988888888 66778888888887778888999999999986422110
Q ss_pred -------------------------Ee----------------------------eccCCCeEEEEEeC-CCC--EEEEE
Q 006126 451 -------------------------KL----------------------------KGHQNRITCLAYSL-SLN--VLVSS 474 (660)
Q Consensus 451 -------------------------~~----------------------------~~~~~~v~~l~~sp-~~~--~l~s~ 474 (660)
.+ .+..+.+.|..+.. +++ ++++|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 00 00123344544322 233 46778
Q ss_pred eCCCcEEEEEcCCCeeeecee----eeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--cee--eeec
Q 006126 475 GADAQLCVWDAVGWKKLCSKF----LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHT--SQLV 545 (660)
Q Consensus 475 s~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~--~~~~ 545 (660)
.++|.+.+||+.++..+-..+ +..-...|. .+|.++.+.+.-..=++ |.+..+..|++... .+. ..+.
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 889999999999974322111 111123455 68999998865444344 46667888887532 221 1111
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 625 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg 625 (660)
. ....|..+.+-||++.+|++++|+.||||+.++..++..++.| .+.++ +++|+| +.+.+|.+|.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence 1 1456788999999999999999999999999999999999865 45566 999999 789999999999
Q ss_pred eEEEEeC
Q 006126 626 RVHVIEP 632 (660)
Q Consensus 626 ~v~iw~~ 632 (660)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=2.2e-15 Score=139.19 Aligned_cols=284 Identities=13% Similarity=0.133 Sum_probs=194.5
Q ss_pred CCCeEEEEEec--C-CCEEEEEEC----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126 311 GGRVVRLIYSH--S-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 383 (660)
Q Consensus 311 ~~~V~~~~~sp--d-g~~l~s~s~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 383 (660)
.-.+.++.||. + +-+||.|+. .+.|.|-. .+..+++.+..-. -.|.-+++.+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~-------------------ld~~s~e~~~~a~-fd~~YP~tK~~ 103 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQ-------------------LDEDSGELVEDAN-FDHPYPVTKLM 103 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEE-------------------EccCCCceeccCC-CCCCCCccceE
Confidence 55788888883 3 346777775 23444432 2333444332111 15889999999
Q ss_pred Ee----CC--EEEEEeCCcEEEEECCC--CeEE--EEE-----cCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126 384 LR----GS--HLFSASGGKISIFSLET--FQTL--ATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 384 ~s----~~--~l~s~~dg~I~iwd~~~--~~~~--~~~-----~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~ 446 (660)
|. |. -|++.++..+++|.+.. .+.. ..+ ..+..+++++.|+.-. +|.+++-|.+..|||++++
T Consensus 104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 98 22 24555567899999873 2211 111 1456788999999877 8999999999999999987
Q ss_pred c---eeeEeeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcE
Q 006126 447 K---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIH 521 (660)
Q Consensus 447 ~---~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~ 521 (660)
. ....+..|...|..++|...+ ..+++.+.||.+|+||++.-+. ... +.++..+ ..+...++|++. -++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STI---IYE~p~~-~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STI---IYEDPSP-STPLLRLSWNKQDPNY 257 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceE---EecCCCC-CCcceeeccCcCCchH
Confidence 4 366788899999999999855 4689999999999999998321 111 1222210 146788999884 566
Q ss_pred EEE-E-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeec-ccccCC
Q 006126 522 LLS-I-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQP 596 (660)
Q Consensus 522 l~~-~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~~~~~~ 596 (660)
+++ . ....|.+.|++. ..++..+.. |...|..++|.|.. ..|++++.|..+.|||+...-......+ ..+.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-- 333 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-- 333 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence 676 5 456899999986 445666654 79999999999864 6899999999999999986432111111 1111
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 629 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i 629 (660)
.++.|+ .+.|+|..+.+++.+... ++.|
T Consensus 334 --a~~EVN--qi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 334 --AGGEVN--QIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred --ccceee--eeeecccCCCEEEEEecC-eeeE
Confidence 134455 999999888999988643 4444
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.5e-14 Score=152.81 Aligned_cols=332 Identities=9% Similarity=0.077 Sum_probs=220.3
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.+++.|.+.+..- +..+.+|+..... ......... ..|.-.+.|.++||+++++|+|..||.|.+|.--....
T Consensus 166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~--~~~~~~~~~-~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-- 239 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH-MCKIHIYFVPKHT--KHTSSRDIT-VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-- 239 (792)
T ss_pred EEEcCCceEEEEEE-eeeEEEEEecccc--eeeccchhh-hhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence 45666666555444 3457788876422 111111111 12777899999999999999999999999997332100
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
+..+..++. -|...|.+++|+ |.+|++|+ .|.+.+|.+.+++ .+-+..-.+.|..+.++
T Consensus 240 ------------~~~t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 240 ------------DSETCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred ------------ccccceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 011111222 388899999999 99999999 8999999999988 45556677899999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeec-----------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
||+ ..+....|..|.+....+.....++.+ ..+-.+.+.++|.-+.++..+..|.|.+||+-+.+.+.
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence 999 888888899999887755443333322 23456778899977788889999999999998876554
Q ss_pred ceeeeeeeeccCC----CCCCeEEEEEecCCcEEEEE---e------cC--cEEEEeCCCCc----eeeeecCCCCCCCe
Q 006126 493 SKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI---H------EG--QIDVYEAPTLN----HTSQLVPDKMDLPI 553 (660)
Q Consensus 493 ~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~---~------d~--~i~iwd~~~~~----~~~~~~~~~~~~~v 553 (660)
...+- ...+.+ ..-.++.++.+..|.++++. . || .+++|-..... +...+.. .|...+
T Consensus 382 ~~~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~-PH~~~~ 458 (792)
T KOG1963|consen 382 KLQVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN-PHGNAF 458 (792)
T ss_pred eEEEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec-CCCcee
Confidence 33222 111111 00246778888889999873 1 22 47888764322 2223332 466666
Q ss_pred EEEEEc-cCCC-EEEEEecCCeEEEEECCCCee------EEEeecccccCCCC-cCcccceEEEEEecCCCCEEEEEeCC
Q 006126 554 TYATYS-CDGK-CIYVSCKSGHVKVFDTSTLEL------RCQINLTAYAQPGT-ISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 554 ~~~~~s-~dg~-~l~sg~~dg~I~iwd~~~~~~------~~~~~~~~~~~~gh-~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
...++. +... .+++++.||.++||-+...+- .+..... |+ +..+ +++.+|+. ||..| +++.|
T Consensus 459 vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-----~sy~k~~--i~a~~fs~-dGsll-a~s~~ 529 (792)
T KOG1963|consen 459 VATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-----GSYHKTP--ITALCFSQ-DGSLL-AVSFD 529 (792)
T ss_pred EEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee-----eccccCc--ccchhhcC-CCcEE-EEecC
Confidence 666654 3333 899999999999999843221 1111110 11 1223 44899999 88555 55678
Q ss_pred CeEEEEeCCCC
Q 006126 625 GRVHVIEPLES 635 (660)
Q Consensus 625 g~v~iw~~~~~ 635 (660)
++|.|||..+.
T Consensus 530 ~~Itiwd~~~~ 540 (792)
T KOG1963|consen 530 DTITIWDYDTK 540 (792)
T ss_pred CEEEEecCCCh
Confidence 89999999884
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.8e-15 Score=159.65 Aligned_cols=265 Identities=15% Similarity=0.192 Sum_probs=184.6
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCC
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 362 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 362 (660)
+.+.+|++.....+.. . +. -...|.|+.|+|.. ..++.|..+|.|.+||+..+.... .
T Consensus 222 ~~~~vW~~~~p~~Pe~--~--~~---~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL--V--LE---SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------P 280 (555)
T ss_pred ceEEEEecCCCCCceE--E--Ee---cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------------C
Confidence 4789999986322221 1 22 37899999999955 566667779999999998776411 1
Q ss_pred CCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeEE------EEEc------CCCCCeEEEEEcC
Q 006126 363 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTL------ATFA------NPPPIATYFILLP 425 (660)
Q Consensus 363 ~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~~------~~~~------~~~~~v~~v~~sp 425 (660)
++... ....|..+|+.+.|. +.-+++++ ||.|..|+++.-... .... .....+++++|.+
T Consensus 281 s~ls~---~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 281 SGLSA---LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred ccccc---ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 11111 111599999999998 44577777 999999988643221 1111 2234678999999
Q ss_pred CC--eEEEEeCCCeEEEEeCCC---Cc-----eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 426 QD--LFAFGFDDSSILVHCPCT---KK-----TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 426 ~~--~l~s~~~d~~I~iwd~~~---~~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
.. .+++|+.+|.|..-+... +. ....+..|.++|+++.++|=+..++..+.|.++++|..... ..+
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~~P 433 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----ASP 433 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----CCc
Confidence 87 999999999988744322 21 12345568899999999996655554445999999988731 233
Q ss_pred eeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126 496 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
+. ....+. ..+++++|||....+.+ . .+|.|.+||+... .++.+... +....+.+.|+++|+.|++|...
T Consensus 434 l~-~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 434 LL-SLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred ch-hhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCC
Confidence 33 233333 46999999998776665 4 7899999998753 34444433 25667778889999999999999
Q ss_pred CeEEEEECCCC
Q 006126 572 GHVKVFDTSTL 582 (660)
Q Consensus 572 g~I~iwd~~~~ 582 (660)
|.+++|++...
T Consensus 508 G~~~~~~l~~~ 518 (555)
T KOG1587|consen 508 GTTHILKLSES 518 (555)
T ss_pred CcEEEEEcCch
Confidence 99999999643
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=1.1e-14 Score=139.26 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=171.9
Q ss_pred CCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126 375 PKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
....+..+.|+ ...|..|+..-.++|.................|.-+-|+..= .|+....-+.+++++.+.+..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 34456667788 445555555556777776544322222223334445555443 333332334699999988877776
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec--cCCCCCCeEEEEEecCCcEEEE-E--e
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-I--H 526 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~-~--~ 526 (660)
+. ....|.++.++. ++|+++-.+ .|+|||+++- +.++++..- +. ..+..+.+++.+.+++. + .
T Consensus 84 ~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M-----klLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM-----KLLHTIETTPPNP---KGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred Ee-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc-----eeehhhhccCCCc---cceEeeccCCCCceEEecCCCC
Confidence 65 567899998864 456665544 4999999993 344433322 21 35677777777889998 4 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
.|.|.+||+.+.+.+..+. .|.+++.+++|+++|.+||++++.|+ ||||.+.+|+.+..+.- |. ..+.+
T Consensus 152 ~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~--~~~~I 221 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GT--YPVSI 221 (391)
T ss_pred CceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------Cc--eeeEE
Confidence 6899999999999988886 48999999999999999999999986 79999999999988863 42 24556
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 606 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.+++|+| ++.+|++.|+.++|+||++....
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 6999999 89999999999999999998754
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=6.9e-16 Score=153.29 Aligned_cols=264 Identities=10% Similarity=0.088 Sum_probs=178.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---- 385 (660)
|...|.|+.|+.+...+.+++.+..+.-|++.+..........+ . +... -|.. ...-.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-----------f-~pt~---~h~~---~rs~~~g~~ 74 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-----------F-VPTD---MHLG---GRSSGGGKG 74 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-----------c-CCcc---cccc---ccccCCCCC
Confidence 78889999999888765555444444444444333211100000 0 0000 1100 00011
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.+.++.++ ||.+.+.+- .++..+.+..|.+.+.+-.|+||| -|++++.||.|++|. ++|-...++.....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 23445555 999988874 467777888999999999999999 999999999999998 56766666666778999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 542 (660)
|.|+.+.++.+. .+.+.+=.+... ...++ ...|+ +-|.++.|++....+++ |.|-..++||. -|..+.
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf 221 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLF 221 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeecc-cCcccc
Confidence 999887766544 344555444431 23443 56777 79999999999999999 58999999998 466554
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.-. .|..+|++++|.|+ +.++.|+. +..|+=..+ .+. +..++||| ||..++.|+
T Consensus 222 ~S~--~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~-------------------~GS--ifnlsWS~-DGTQ~a~gt 275 (737)
T KOG1524|consen 222 TSA--AEEYAITSVAFNPE-KDYLLWSY-NTARFSSPR-------------------VGS--IFNLSWSA-DGTQATCGT 275 (737)
T ss_pred cCC--hhccceeeeeeccc-cceeeeee-eeeeecCCC-------------------ccc--eEEEEEcC-CCceeeccc
Confidence 443 47999999999999 55555543 334411111 222 34899999 899999999
Q ss_pred CCCeEEEE
Q 006126 623 TNGRVHVI 630 (660)
Q Consensus 623 ~Dg~v~iw 630 (660)
..|.|.+=
T Consensus 276 ~~G~v~~A 283 (737)
T KOG1524|consen 276 STGQLIVA 283 (737)
T ss_pred cCceEEEe
Confidence 99987663
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=7.7e-17 Score=167.65 Aligned_cols=275 Identities=11% Similarity=0.104 Sum_probs=209.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
||.+.|.|+.|...|.++++|+.|..++||..++..+ .... .||.+.++.++.+ +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------lAs~--rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------LASC--RGHSGDITDLAVSSNN 244 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhh---------------------hccC--CCCccccchhccchhh
Confidence 5999999999999999999999999999998766544 2111 1899999999999 5
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeE---ee-ccCCCeEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK---LK-GHQNRITC 461 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~---~~-~~~~~v~~ 461 (660)
-++++++ |..|++|.+.++.++..+.+|.+.|++++|+|- .+.+.||++++||.+-...+.. +. .....+.+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 5778888 999999999999999999999999999999995 4788999999999871111111 11 12355677
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-cEEEEE-ecCcEEEEeCCCCc
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~-~d~~i~iwd~~~~~ 539 (660)
+.|..++..+++++.|+.-..|.+..-. .+. ..+.-+.++.+- .+.+++ .+-.+++|++.+|.
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLA------------WRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ 386 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhh------------hhc---cceEEEeccccccccceeeeeeeEeeeeecccch
Confidence 7888888999999999998888765411 111 111122222232 334444 77889999999998
Q ss_pred eeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 618 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 618 (660)
......+ |...+..+.++|-.. ...+++.||...|||+-.|.+++.... || .. ....+||+ ||..+
T Consensus 387 l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------gh-~k---l~d~kFSq-dgts~ 453 (1113)
T KOG0644|consen 387 LLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------GH-GK---LVDGKFSQ-DGTSI 453 (1113)
T ss_pred hhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------cc-ce---eeccccCC-CCceE
Confidence 8877765 688899999998655 455889999999999999988877652 33 22 33789999 89999
Q ss_pred EEEeCCCeEEEEeCCCCce
Q 006126 619 ALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 619 ~s~s~Dg~v~iw~~~~~~~ 637 (660)
+...+-|.+.|.....++.
T Consensus 454 ~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ecCCCCCceEEeccCCCcc
Confidence 8887779999987766543
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=2.9e-17 Score=170.73 Aligned_cols=236 Identities=22% Similarity=0.273 Sum_probs=186.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
+|...|+|+.|. |.++++|+ |..++||.++++.+.....+|.+.|+.++.+.++ .+++++.|..|++|-+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 7899999999999999999999999999999999 9999999999999999999999
Q ss_pred eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126 450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 527 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d 527 (660)
..+.+|++.|++++|+|-. +.+.||++++||.+-... ....++. +.+. .-+.++.|..++..+++ +.|
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~--~~~~----~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK--FTEK----DLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC--cccc----cceeeeeccccccccccccCC
Confidence 9999999999999999954 778899999999982111 0011111 1111 35777888888888888 477
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
+.-..|.+..... +...+.-+.++.|- .+.+++-.+-.+.+|++.+|.+...+. || .+.++
T Consensus 338 ~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-------gh-sd~~y-- 399 (1113)
T KOG0644|consen 338 GEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-------GH-SDEVY-- 399 (1113)
T ss_pred cccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-------cc-cccee--
Confidence 8777776542111 11222222222222 466677778889999999998887765 44 55677
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 607 VIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.+.+||-+.....+++.||...|||+-.|-+
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 7899998777888999999999999987754
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.9e-15 Score=142.45 Aligned_cols=291 Identities=10% Similarity=0.047 Sum_probs=204.6
Q ss_pred cCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEe
Q 006126 260 NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 339 (660)
Q Consensus 260 ~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~ 339 (660)
....|..++.||.++++||+|+.|..+++|+++........+.+.+.++.|.+.|.|++|....+++.+|+.+++|..-|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 34456667799999999999999999999999743222222334455666889999999999999999999999999988
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-EEE--EEcC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLA--TFAN 413 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-~~~--~~~~ 413 (660)
+++.+.. .++.. +...+.|+.+..+ .+.|++.+ ++.|.+||..... ... ....
T Consensus 134 iEt~qsi----------~V~~~-----------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 134 IETKQSI----------YVANE-----------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred cccceee----------eeecc-----------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 8776541 11111 1234588888888 78888888 8999999997644 221 2224
Q ss_pred CCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce-eeE---eec---cCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 414 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAK---LKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 414 ~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~-~~~---~~~---~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
.......+.|+|.. +|++.+..+-+-+||.+..+. +.. +.+ ....-.++.|+|+|+.+++--....-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 45667889999988 889999999999999875422 111 111 122235678999999998876666666788
Q ss_pred cCCCeeeeceeeeeeeeccCCC----CCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC----c----------------
Q 006126 485 AVGWKKLCSKFLHSFQTGLVPE----TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----N---------------- 539 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~----~---------------- 539 (660)
+-+..+ .. +...|.+. ...+.+++|..|-. +++| .+-.|++|.+... .
T Consensus 273 ~~S~R~---~V---~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 273 FISQRC---FV---LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred eecccc---ee---EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 876321 11 12222210 13466788876654 6665 5568999987531 1
Q ss_pred ---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 540 ---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 540 ---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
.+..+. +|...+..+.|+|...+|++.+-...++||.-.
T Consensus 346 i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 346 IEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 112232 368888999999999999999999999999754
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=8.7e-15 Score=154.53 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=174.1
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeE--EEE----EcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEE
Q 006126 375 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LAT----FANPPPIATYFILLPQD---LFAFGFDDSSILVH 441 (660)
Q Consensus 375 h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~--~~~----~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iw 441 (660)
-...|.|++|+ ..+++.|. +|+|.+||+..+.. ... ...|..+++.+.|..+- -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 57789999999 66777777 89999999987655 222 23688899999997765 59999999999999
Q ss_pred eCCCCce-e-----eEee------ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEc---CCCeeeeceeeeeeeeccCC
Q 006126 442 CPCTKKT-K-----AKLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDA---VGWKKLCSKFLHSFQTGLVP 505 (660)
Q Consensus 442 d~~~~~~-~-----~~~~------~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~ 505 (660)
+++.-.. . .... .-...+++++|.+ +-..+++|+.+|.|..=+. +........... ....|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~- 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI- 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence 8764322 1 1111 1234688999988 4567899999999877333 221111111121 233444
Q ss_pred CCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCC
Q 006126 506 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 506 ~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~ 582 (660)
+.|+++.++|-+..++. +.|.+++||... ...++..+.. +...+++++|||.. ..++++..||.|.|||+...
T Consensus 399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 79999999998776665 679999999987 5666655543 46679999999976 46777778999999999754
Q ss_pred eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.......... + ....+ .+.|++ .|..|++|...|++++|++...
T Consensus 475 ~~~Pv~s~~~----~--~~~l~--~~~~s~-~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKV----C--SPALT--RVRWSP-NGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCcccccc----c--ccccc--eeecCC-CCcEEEEecCCCcEEEEEcCch
Confidence 3332222110 1 22223 788888 8999999999999999999653
No 201
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.3e-17 Score=171.05 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=218.9
Q ss_pred hhHHHHHHhhhcceeeeeeeecCCCCCcccccc-cCccccchhhhccccccCCCCCCCCccccccC----CCC---CCce
Q 006126 186 KSRLLSLIKQIMDWWVPYCINVMPNANNETISL-KDFPTVSNLRYASSILTDKPNQEGRPLDASSG----DDS---NDSS 257 (660)
Q Consensus 186 ~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---v~~~ 257 (660)
+-.|.+++.|+++.|+++|++++..+|...+.. |.+|.++....+..+.+-+-... .-+..|.| ... +++
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r-el~~~y~gV~g~~~dr~~IFS- 1089 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR-ELQSFYSGVHGNRRDRQFIFS- 1089 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch-hhcCcccccccCcccchhhHh-
Confidence 457999999999999999999999999888777 88888888777633322211100 00000110 000 111
Q ss_pred eec------C-CCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE
Q 006126 258 CFN------D-NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 330 (660)
Q Consensus 258 ~~~------~-~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s 330 (660)
.|- + ......+.||-+.++|+.|+..|.|+++++..+...+... .|.++|+.+.-+.||..+++.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-------cH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-------CHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-------ccccccccccccCCcceeeeec
Confidence 121 1 1223336899999999999999999999998644333322 3999999999999999888776
Q ss_pred CCC--cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC
Q 006126 331 QTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF 405 (660)
Q Consensus 331 ~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~ 405 (660)
.-. ...+|+.... +... +.-..-.++.|+ ...-+.|. ...+.+||++++
T Consensus 1163 s~S~PlsaLW~~~s~--------------------~~~~------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------------GGPR------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred cccCchHHHhccccc--------------------cCcc------ccccccceeehhhhHHHHHhcccccceEEEecccC
Confidence 632 3445554321 1111 112345678888 22223333 678899999999
Q ss_pred eEEEEE-c---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 406 QTLATF-A---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 406 ~~~~~~-~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
..+.++ . +....-+++.|+|++ +++- || .+||++..+.++.|...+..+.. .|+|+|..++..+.
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINSE---- 1286 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeech----
Confidence 877763 2 222333788999999 6654 33 78999998888888765544444 49999999999886
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---c---------------CcEEEEeCCCCceee
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---E---------------GQIDVYEAPTLNHTS 542 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---d---------------~~i~iwd~~~~~~~~ 542 (660)
|||+++.. .+++++. -.-..+.|+..|..++... | ...+-+|..+.+.+.
T Consensus 1287 -IwD~RTF~-----lLh~VP~------Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ia 1354 (1516)
T KOG1832|consen 1287 -IWDMRTFK-----LLHSVPS------LDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIA 1354 (1516)
T ss_pred -hhhhHHHH-----HHhcCcc------ccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccce
Confidence 99999943 3332222 1234678888887765421 1 135667777777888
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECC
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTS 580 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~ 580 (660)
++.. ...+..+|-+|...++..-... -..++|.+-
T Consensus 1355 Ti~v---~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIG 1398 (1516)
T KOG1832|consen 1355 TIPV---DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIG 1398 (1516)
T ss_pred eeec---ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhc
Confidence 8865 6778888888888887764332 246666653
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=3.1e-15 Score=138.20 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=176.6
Q ss_pred CCCCeEEEEEe-----CCEEEEEe--C---CcEEEEEC--CCCeEEEEEc-CCCCCeEEEEEcCCC------eEEEEeCC
Q 006126 375 PKDSISCFALR-----GSHLFSAS--G---GKISIFSL--ETFQTLATFA-NPPPIATYFILLPQD------LFAFGFDD 435 (660)
Q Consensus 375 h~~~v~~v~~s-----~~~l~s~~--d---g~I~iwd~--~~~~~~~~~~-~~~~~v~~v~~sp~~------~l~s~~~d 435 (660)
..-.++++.|+ +.+|+.|+ + +.|.+..+ .+++.+..-. .|..+++.+.|.|+. +||++ +
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~ 120 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--S 120 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--c
Confidence 34457788888 55788888 2 45666544 4455443332 678899999999975 34443 4
Q ss_pred CeEEEEeCCCC--ce--eeEe-----eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC
Q 006126 436 SSILVHCPCTK--KT--KAKL-----KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 505 (660)
Q Consensus 436 ~~I~iwd~~~~--~~--~~~~-----~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 505 (660)
..+++|.+... +. ...+ ..+..+++++.|+. +-+++.+.|-|-+..|||+.++. ...+++-.-.|.
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---~~~vkTQLIAHD- 196 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---SGTVKTQLIAHD- 196 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc---ccceeeEEEecC-
Confidence 47999988732 11 1111 23567899999987 66889999999999999999862 123444466777
Q ss_pred CCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEcc-CCCEEEEEecC-CeEEEEECC
Q 006126 506 ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS 580 (660)
Q Consensus 506 ~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~-dg~~l~sg~~d-g~I~iwd~~ 580 (660)
.+|..++|...+..+.+ |.||.+|+||++..+.-..+..... ..+...++|++ |-+++|+-..| ..|.|.|++
T Consensus 197 --KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 --KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred --cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 69999999997766554 6999999999997665444333323 67888999996 55788887666 579999998
Q ss_pred C-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 581 T-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 581 ~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
. +..+..+. +| .+.|+ +++|.|..+..++|||+|..+.|||+...
T Consensus 275 ~P~tpva~L~-------~H-~a~VN--gIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 275 VPCTPVARLR-------NH-QASVN--GIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceehhh-------cC-ccccc--ceEecCCCCceeeecCCcceEEEEecccc
Confidence 6 44556655 44 55666 99999988899999999999999999764
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.7e-14 Score=144.84 Aligned_cols=272 Identities=13% Similarity=0.088 Sum_probs=202.1
Q ss_pred eeeEecCCCCEE-EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126 266 RESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 344 (660)
Q Consensus 266 ~~~~~spdg~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~ 344 (660)
..+..||||+|+ |+|..--.|++||+.. ..++++.+.....|.-.-.+.|-..++.-..|.+|.+-.
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlan-------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa----- 122 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLAN-------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA----- 122 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEccc-------ceeeeeecccccceeEEEeccchhhheEeecCceeeehh-----
Confidence 345889999976 5667789999999974 112244432345566666666766677777788776432
Q ss_pred eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126 345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421 (660)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v 421 (660)
..|...... -...-..++++ ..+++.|+...|.-++++.|..+..+......++++
T Consensus 123 -----------------k~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 123 -----------------KYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred -----------------hcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 222222111 12223455565 455556668899999999999999999888999999
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec------cCC-----CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~------~~~-----~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
..++-. +|++|+.+|.|-.||.++...+.++.. |.+ .|+++.|+.+|-.+++|+.+|.+.+||+++.+
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 999988 999999999999999998776665532 333 39999999999999999999999999999943
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
++. ...|.. ..+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++-++++
T Consensus 262 -----pl~--~kdh~~-e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 262 -----PLL--VKDHGY-ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred -----cee--ecccCC-ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEE
Confidence 333 222321 157889999775 4556666778899999999999888865 667999999999999999
Q ss_pred EecCCeEEEEECCC
Q 006126 568 SCKSGHVKVFDTST 581 (660)
Q Consensus 568 g~~dg~I~iwd~~~ 581 (660)
+-+++.+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 99988887776654
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=8.2e-15 Score=145.77 Aligned_cols=250 Identities=17% Similarity=0.175 Sum_probs=171.0
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEE-Eec-------CCCEEEEEECCCcEEEEec
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLI-YSH-------SGDFLVALTQTATHKLWKW 340 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~-~sp-------dg~~l~s~s~dg~i~vw~~ 340 (660)
.|+.....+.+++.+..+.-||+.. .......++. +-|.... .-+ ....++.++.||.+.+-+-
T Consensus 21 ~w~~~eei~~~~dDh~~~~~~~~~~----~s~~~~~~p~----df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k 92 (737)
T KOG1524|consen 21 DWSSNEEIYFVSDDHQIFKWSDVSR----DSVEVAKLPD----DFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNK 92 (737)
T ss_pred cccccceEEEeccCceEEEeecccc----hhhhhhhCCc----ccCCccccccccccCCCCCcceEEEEcCCceEEEecc
Confidence 5666666666665556666666653 3333333332 1111111 111 2246788888888876542
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 417 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~ 417 (660)
.+++.... ..|.+.+.+-.|+ |.-|++++ ||.|++|.- +|....++.....+
T Consensus 93 ----------------------~~rVE~sv--~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 93 ----------------------SARVERSI--SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEES 147 (737)
T ss_pred ----------------------cchhhhhh--hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCce
Confidence 22221111 1699999999999 77888888 999999984 45555556667788
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
|+|++|.|+. .++.+- .+.+.|=.+.....+-.++.|.+-|.++.|++..+.+++|+.|-..++||-.. ..+
T Consensus 148 v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------~~L 220 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------ANL 220 (737)
T ss_pred eEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC------ccc
Confidence 9999999999 444333 33455555555566778899999999999999999999999999999999876 233
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 576 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i 576 (660)
. ....|. .+|++++|.|+ +.++.++-++++ +.. ...+.|..++||+||..+++|+..|.+.+
T Consensus 221 f-~S~~~e---y~ITSva~npd-~~~~v~S~nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 221 F-TSAAEE---YAITSVAFNPE-KDYLLWSYNTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-cCChhc---cceeeeeeccc-cceeeeeeeeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 3 234455 68999999999 555554444444 222 13788999999999999999999987754
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.9e-15 Score=145.77 Aligned_cols=198 Identities=17% Similarity=0.120 Sum_probs=150.1
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 497 (660)
.+++|+++| .+++|+.||++|+|+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 689999999 99999999999999977777777777899999999999999999999999 999999999743322211
Q ss_pred eeeeccCCCCCCeEEEEEecCC---cE-EEEE--ecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQ---IH-LLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~---~~-l~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
.+.. .....+.|+.|+ .+ +++. ..+.|+.||+...+. .+..+.-.....|.+++.|+||++++.|
T Consensus 226 ---~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 226 ---FSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred ---cccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 1111 356678888776 32 3332 446677777643221 1111111125689999999999999999
Q ss_pred ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 569 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 569 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+.||.|-|++..+.+.+...+. .+...++.+.|+| |.+++++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998887766542 2234567999999 899999999999999988754
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.2e-13 Score=129.81 Aligned_cols=283 Identities=17% Similarity=0.172 Sum_probs=186.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 387 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~ 387 (660)
...+..++|++.-..+|++..|-.|++|+-..... ..++. ..+..|+|++|. +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-------------------t~Lks----~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-------------------TKLKS----VSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-------------------ceecc----hhhcceeEEEeccCCcc
Confidence 45678899999767788999999999887543211 11111 246779999999 77
Q ss_pred EEEEEeCCcEEEEECCC----CeEE--------EEEc-CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEe
Q 006126 388 HLFSASGGKISIFSLET----FQTL--------ATFA-NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~----~~~~--------~~~~-~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~ 452 (660)
.|+.|+.+-|.+|.... +..+ +.++ .....|+++.|++|| .+++++ .|..|.|||+.++..+...
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 89999999999998753 1111 1122 122679999999999 888777 4668999999999877655
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc-CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 531 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~ 531 (660)
....+.++-+.|||||.+|++++-|+..++|.. +++...+... +. +.|...+|+|+|++|+.+..+.=+
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l------gs----grvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL------GS----GRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec------cC----CceeeeeecCCCCEEEEEEcCCce
Confidence 445678899999999999999999999999954 4433221111 11 579999999999999875555545
Q ss_pred EEeCCC-Cce--------------eeee------cCC-CCCCCeEEEEEccCCCEEEEEecCC--------eEEEEECCC
Q 006126 532 VYEAPT-LNH--------------TSQL------VPD-KMDLPITYATYSCDGKCIYVSCKSG--------HVKVFDTST 581 (660)
Q Consensus 532 iwd~~~-~~~--------------~~~~------~~~-~~~~~v~~~~~s~dg~~l~sg~~dg--------~I~iwd~~~ 581 (660)
+|.+.- ++. +..+ .+. --.+.+.+++|+|.|.+||+.-..+ .|.+||.+.
T Consensus 305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 555421 100 0000 000 0146788999999999999865543 466788765
Q ss_pred CeeEEEeecccccCCCCcCcccceEEEEEecC--CCCEEEEEeCCCeEEEEeCC
Q 006126 582 LELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.-....... . ...| ..+. -++|+|. ++.+|..+=..|.+.-|.+.
T Consensus 385 sp~vels~c-g-~i~g--e~P~---~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 385 SPPVELSYC-G-MIGG--EYPA---YISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCceEEEec-c-cccC--CCCc---eEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 543332211 1 1112 1222 3555553 45567777677877777653
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.8e-14 Score=151.78 Aligned_cols=206 Identities=17% Similarity=0.099 Sum_probs=143.2
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCC
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL 468 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~ 468 (660)
..|.+||..... .+.+..+...+.+..|+||| .|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence 589999986544 55667777889999999999 77776643 3799999988754 3333333 3468999999
Q ss_pred CEEEEEe-CCCcEEEE--EcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC-Cceee
Q 006126 469 NVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-LNHTS 542 (660)
Q Consensus 469 ~~l~s~s-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~-~~~~~ 542 (660)
+.|+.++ .+|.+.+| |+.++.. . ....+. ..+....|+|||+.|+. + .++...||++.. +....
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~------~-~lt~~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTP------S-QLTSGA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCe------E-eeccCC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 9888765 67765555 6655331 1 122233 45778999999998886 4 567777777643 22222
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+ . +.. ....|+|||++|+.++.++ +.+||+.+++...... ++ ... .++|+| ||++|+.++
T Consensus 330 ~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~---~~~--~~~~sP-dG~~i~~~s 390 (429)
T PRK01742 330 LV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------TF---LDE--SPSISP-NGIMIIYSS 390 (429)
T ss_pred Ee-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------CC---CCC--CceECC-CCCEEEEEE
Confidence 23 2 222 4578999999999887765 5669999887543221 11 112 678999 899999999
Q ss_pred CCCeEEEEeCC
Q 006126 623 TNGRVHVIEPL 633 (660)
Q Consensus 623 ~Dg~v~iw~~~ 633 (660)
.+|.+.+|.+.
T Consensus 391 ~~g~~~~l~~~ 401 (429)
T PRK01742 391 TQGLGKVLQLV 401 (429)
T ss_pred cCCCceEEEEE
Confidence 99999888864
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.7e-13 Score=128.67 Aligned_cols=238 Identities=15% Similarity=0.224 Sum_probs=164.1
Q ss_pred eEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeCC------CeEEEEeCCCCc
Q 006126 379 ISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDD------SSILVHCPCTKK 447 (660)
Q Consensus 379 v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~d------~~I~iwd~~~~~ 447 (660)
..+++|+ ..-++++.|.-.++|+.+..+.....+.+..++ .-+-| ..+ ..++||.+ ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 4458888 456666678889999987644322222222222 22222 233 44555554 379999977777
Q ss_pred eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-
Q 006126 448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I- 525 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~- 525 (660)
++.++. ...+|.++.+.++ .+++. ..+.|+||...+.- +.+..+.....| ....+++-+.+..+|+. |
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~----k~l~~~et~~NP--kGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP----KLLHVIETRSNP--KGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh----hheeeeecccCC--CceEeecCCCCceEEEcCCC
Confidence 777776 6788999999764 44444 47899999987421 112211111112 34555555555666666 6
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe-EEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126 526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
.-|.|.|-|+...+.-.......|...|.+++++-+|..+|+++..|+ |||||..+|+++.++.- |.....++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy 230 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIY 230 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEE
Confidence 669999999976554212222358999999999999999999999997 79999999999999863 54445566
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+++||| +..+||++|+-|+|+|+.+....
T Consensus 231 --~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 --CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred --EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 999999 89999999999999999987643
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5e-15 Score=144.12 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=155.5
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-
Q 006126 380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 454 (660)
Q Consensus 380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~- 454 (660)
.+++|+ |..+++++ ||++|+|+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 78999999 9999999988888888888999999999999999 99999999 999999999977665542
Q ss_pred -cCCCeEEEEEeCCC---C--EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126 455 -HQNRITCLAYSLSL---N--VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 527 (660)
Q Consensus 455 -~~~~v~~l~~sp~~---~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d 527 (660)
.......+.|+.|+ . .++....-+.|+.||+..+.........+....+ ..|++++.++||++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 23445677888776 3 3333444577888888765432112222222333 379999999999999995 99
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
|.|-|++..+.+.++-.+. .|...|+.+.|+||.+++++.+.|....|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999998888766654 6899999999999999999999998888887654
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.5e-15 Score=145.71 Aligned_cols=294 Identities=14% Similarity=0.064 Sum_probs=214.9
Q ss_pred CCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC--CCEEEEEECCCcEEEE
Q 006126 261 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLW 338 (660)
Q Consensus 261 ~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd--g~~l~s~s~dg~i~vw 338 (660)
.+.|...+.|...|..|++|+.|..|.+||+..+ .... .++ .||...|....|-|. .+.+++++.||.+++=
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l--~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKL--SFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhcc---Cccc--ccc-cccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4456667799999999999999999999999742 2222 233 469999999999883 3678999999999875
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEc--
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-- 412 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~-- 412 (660)
.+...+ .+..+.....|.++|..++.. ..-|.+++ |+.+.-+|+.++.....+.
T Consensus 215 ~i~~t~--------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETG--------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eecccc--------------------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence 543322 222111222588999998887 55677777 9999999998765544332
Q ss_pred -CCCC---CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce------eeEeec------cCCCeEEEEEeCCCCEEEEE
Q 006126 413 -NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------KAKLKG------HQNRITCLAYSLSLNVLVSS 474 (660)
Q Consensus 413 -~~~~---~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~------~~~~~~------~~~~v~~l~~sp~~~~l~s~ 474 (660)
.+.. ....++..|.+ .+++|+.|..+++||.+.-.. +.++.. ....|+|++|+.++.-|.+.
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 45788999988 999999999999999764321 223322 23578999999888888888
Q ss_pred eCCCcEEEEEcCCCee-------eeceeeeeeeeccCCCCCCeEEEEE-ecCCcEEEEEec-CcEEEEeCCCCceeeeec
Q 006126 475 GADAQLCVWDAVGWKK-------LCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHE-GQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 475 s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~d-~~i~iwd~~~~~~~~~~~ 545 (660)
..|-.|+++.-.-+.. .....++..+.||.+. ..|..+-| -|...|+++|.| |.|.||+-.+++.++.+.
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 8899999994433221 0012333346788642 34666765 577888888765 899999999999999888
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
+.. ..|.|+.=+|--..||+++-|..|+||-..+.+
T Consensus 434 gDr--~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 GDR--HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ccc--ceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 754 389999999999999999999999999885544
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=6.4e-14 Score=131.67 Aligned_cols=272 Identities=14% Similarity=0.120 Sum_probs=182.0
Q ss_pred EEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-
Q 006126 316 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA- 392 (660)
Q Consensus 316 ~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~- 392 (660)
-+.|||+|+|+|+++.- .+.|-|. .+-++.+.+. --+.|..+.|. ..+++++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~---------------------~tlq~~qlf~---cldki~yieW~ads~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDS---------------------ETLQLHQLFL---CLDKIVYIEWKADSCHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEecc---------------------chhhHHHHHH---HHHHhhheeeeccceeeeeee
Confidence 56899999999999865 4444433 3322222211 12446677888 3444444
Q ss_pred e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126 393 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 393 ~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
. ++.|.+|++...+-...+.....++.++.|+||| .+.+...|-.|.+|.+.+.+... +.-.+..+..++|+|||+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 4 8999999999999888999999999999999999 67778889999999998765543 222344568888999998
Q ss_pred EEEEEeCC------------------------------------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 470 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 470 ~l~s~s~d------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
+.+.++.- ..+.+||---. ..+ ..-|.. -.+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-----ykv---~aYe~~--lG~k~v 216 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-----YKV---YAYERG--LGLKFV 216 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-----hee---eeeeec--cceeEE
Confidence 87765431 12333432110 010 111111 368889
Q ss_pred EEecCCcEEEEE-ecCcEEEEeCCCCceeee-------------------------------------------------
Q 006126 514 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ------------------------------------------------- 543 (660)
Q Consensus 514 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~------------------------------------------------- 543 (660)
+|+|.++++++| .|+.+++.+--+-+....
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999995 898888765221111000
Q ss_pred -----------ecCC----CCCCCeEEEEEccCCCEEEEEecC--CeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126 544 -----------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 544 -----------~~~~----~~~~~v~~~~~s~dg~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
+++. .....+--++|++|..++++-.+. +.+-+||++..++...+.. .+++.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir-- 365 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR-- 365 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence 0000 012345568999999999987553 7899999998877666543 34555
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 607 VIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.+.|+| ....|+.+.....+++|.+.-.
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 899999 5667777777778999998753
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.7e-12 Score=133.62 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=193.3
Q ss_pred EEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEE
Q 006126 278 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 357 (660)
Q Consensus 278 ~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~ 357 (660)
++-..+|.|.+.|..+ ...... ++. ....-..+.|+|||+++++++.||.|.++|+.+.+.
T Consensus 10 V~~~~~~~v~viD~~t---~~~~~~--i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------------ 70 (369)
T PF02239_consen 10 VVERGSGSVAVIDGAT---NKVVAR--IPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------------ 70 (369)
T ss_dssp EEEGGGTEEEEEETTT----SEEEE--EE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------------
T ss_pred EEecCCCEEEEEECCC---CeEEEE--EcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------------
Confidence 4566789999999874 222333 322 122234578999999999999999999988877654
Q ss_pred EecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCC
Q 006126 358 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-------PPPIATYFILLPQ 426 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~-------~~~~v~~v~~sp~ 426 (660)
+.... -.....+++++ |+++++++ .+.+.++|.++.+.++.+.. ....+..+..+|.
T Consensus 71 ---------v~~i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 71 ---------VATIK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp ---------EEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred ---------EEEEe---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 22111 23346788888 88988887 79999999999999988753 2346778888888
Q ss_pred C-eEEEEeC-CCeEEEEeCCCCceee-EeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 427 D-LFAFGFD-DSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 427 ~-~l~s~~~-d~~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
. .++..-. .+.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|.++++..... ..+
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i-----~~g 213 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI-----DTG 213 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE-----E-S
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe-----ecc
Confidence 8 5555544 5788888977654432 222244567788999999987664 45678999999986543321 112
Q ss_pred cCCCCCCeEEE-------EEe--cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE----
Q 006126 503 LVPETTIVNHI-------QFH--PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS---- 568 (660)
Q Consensus 503 ~~~~~~~v~~~-------~~s--p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg---- 568 (660)
..+....+..+ .|. ..+...++ -....+.+||..+.+.++++... ..+ ..+..+|+++++.+.
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT-
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccCC
Confidence 11111222222 121 12223322 24446678999999999999763 344 678889999999987
Q ss_pred ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe--CCCeEEEEeCCCCceeccCCCC
Q 006126 569 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 569 ~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s--~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
...+.|.++|.++.+....+... ....+..+.|++ ||..+-.+. .+|.|.|||..+.+.+-..+.+
T Consensus 291 ~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~ 358 (369)
T PF02239_consen 291 PDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVP 358 (369)
T ss_dssp SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE--
T ss_pred CCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEEee
Confidence 44589999999999877776532 112255899999 788654433 3347999999998875444433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.2e-13 Score=128.70 Aligned_cols=299 Identities=11% Similarity=0.068 Sum_probs=184.2
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
+.+.++|++.-.-+|++..|-.|+||+-.. +.+..++. .-...|.|++|-|.+..-++.+--+-|.+|.....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRT 172 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcc
Confidence 334457888777888999999999999864 11111221 13678999999997644444444567889987643
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIAT 419 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~ 419 (660)
..... .++.-....+++.+ ..|| .+|+++.|. |..+++++ |..|.|||+.++.++.......+.++
T Consensus 173 ln~~r------~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 173 LNANR------NIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred ccccc------ccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 22000 00000001111111 1245 789999999 88999998 68999999999988776656667888
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe----ee---
Q 006126 420 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK----KL--- 491 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~----~~--- 491 (660)
-+.||||| +|++++-|+..++|+.........+.-..+.|....|+|+|++|+.... |.-++|.+.... ..
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 99999999 9999999999999964433222333334568999999999998766543 333344432211 00
Q ss_pred ---eceeee-----eeeeccCCCCCCeEEEEEecCCcEEEEEec---------CcEEEEeCCCCceeeeecCC-CCCCCe
Q 006126 492 ---CSKFLH-----SFQTGLVPETTIVNHIQFHPDQIHLLSIHE---------GQIDVYEAPTLNHTSQLVPD-KMDLPI 553 (660)
Q Consensus 492 ---~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d---------~~i~iwd~~~~~~~~~~~~~-~~~~~v 553 (660)
....+. ++..+..---+++.+++|.|.|.+|++... ..|.+||.+..-.+.-...+ ......
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P 401 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYP 401 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCC
Confidence 000000 011111100157889999999999998522 23677887654433322111 112224
Q ss_pred EEEEEcc---CCCEEEEEecCCeEEEEECC
Q 006126 554 TYATYSC---DGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 554 ~~~~~s~---dg~~l~sg~~dg~I~iwd~~ 580 (660)
.-++|+| +|.+|..+=..|.+.-|++.
T Consensus 402 ~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 402 AYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 4566664 55666666666777666653
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.1e-13 Score=137.08 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=195.5
Q ss_pred CCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE-EEe--
Q 006126 310 FGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALR-- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~s-- 385 (660)
|...-+.|..+|||+|+++.| ..-.|++||+..-...+. + +-...+..+ -.+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE--------R----------------hlDae~V~feiLsDD 105 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE--------R----------------HLDAEVVDFEILSDD 105 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeee--------e----------------cccccceeEEEeccc
Confidence 677888999999999876554 478999999876544221 0 112222222 222
Q ss_pred -CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 -~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.+.+.-..|.+|.+-... |.... +. -+..-..++++.-. -|++++....|+-++++.|+.+..|....+.++++.
T Consensus 106 ~SK~v~L~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred hhhheEeecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 222223335555443221 21111 11 01122355665544 566666677899999999999999988889999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC--CCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 540 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~ 540 (660)
.++...+|++|+.+|.|..||.++...............|. .....|+++.|+.+|-.+++| .+|.+.|||+++.++
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99999999999999999999999855433322221111111 001359999999999999996 899999999999888
Q ss_pred eeeecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126 541 TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 618 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 618 (660)
+..-. +....+|..+.|.+. ++.+++. ....++|||-.+|+....+.+ ...++ .+++-| ++.++
T Consensus 263 l~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------t~~lN--D~C~~p-~sGm~ 328 (703)
T KOG2321|consen 263 LLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------TSDLN--DFCFVP-GSGMF 328 (703)
T ss_pred eeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------cCCcC--ceeeec-CCceE
Confidence 65542 233678999999765 3445444 457899999999999988875 23355 888999 78899
Q ss_pred EEEeCCCeEEEEeCCCC--ceec
Q 006126 619 ALGLTNGRVHVIEPLES--EVEW 639 (660)
Q Consensus 619 ~s~s~Dg~v~iw~~~~~--~~~w 639 (660)
++|-+++.+..|=+..- .++|
T Consensus 329 f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred EEecCCCcceeEEccccCCCchh
Confidence 99999888877765542 2466
No 215
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.5e-13 Score=132.62 Aligned_cols=318 Identities=10% Similarity=0.106 Sum_probs=204.3
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
+...+|++|+++|.+.. ..++|++.... ....+.. ...+.++.|||-|.||.+--. -.+|.-.+
T Consensus 38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~---~~~lt~~------~~~~~~L~fSP~g~yL~T~e~---~~i~~~~~--- 101 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDN-QVVKVFEIATL---KVVLCVE------LKKTYDLLFSPKGNYLLTWEP---WAIYGPKN--- 101 (566)
T ss_pred eeEEEcCCCcEEEEEcC-CeEEEEEccCC---cEEEEec------cceeeeeeecccccccccccc---cccccCCC---
Confidence 45688999998887654 66888888741 1222221 338999999999999876321 11111110
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
.....+++|+.+++.....+.. ..+.. ++..|+ ++.+++-- .+.+.+|++...+... -.-|...|+.+.+
T Consensus 102 -----~~~pn~~v~~vet~~~~s~~q~-k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~l 173 (566)
T KOG2315|consen 102 -----ASNPNVLVYNVETGVQRSQIQK-KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSL 173 (566)
T ss_pred -----CCCCceeeeeeccceehhheeh-hhhcC-cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEe
Confidence 0122345666666443322221 12222 678888 55555544 7899999998733221 1245778899999
Q ss_pred cCCC---eEEE-----EeCCCeEEEEeCCCCceeeEe---eccCCCeEEEEEeCCCCEEE-EE--eCC---------CcE
Q 006126 424 LPQD---LFAF-----GFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLV-SS--GAD---------AQL 480 (660)
Q Consensus 424 sp~~---~l~s-----~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~-s~--s~d---------g~i 480 (660)
+|.+ .+++ +|.-+.|+||....+..-..+ .-....=..+.|++-|.-|+ .+ ..| .++
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 9985 4432 334458999986522111111 00122233567888665432 22 223 357
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 557 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 557 (660)
++.++...+ ..+. .... ++|.++.|+|+|+.+++ | .-..+.|+|+ .+.++..+. .++-.++-
T Consensus 254 yll~t~g~s----~~V~---L~k~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~ 318 (566)
T KOG2315|consen 254 YLLATQGES----VSVP---LLKE---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAF 318 (566)
T ss_pred EEEEecCce----EEEe---cCCC---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceE
Confidence 777777311 1122 1112 68999999999998887 4 5678999999 578877773 67778899
Q ss_pred EccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC------CCeEE
Q 006126 558 YSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVH 628 (660)
Q Consensus 558 ~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~------Dg~v~ 628 (660)
|+|.|++|+.+|-+ |.|-|||+.+.+++..+... +.+-+.|+| ||.+++|++. |+.++
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEeccccEEecCCeE
Confidence 99999999987765 89999999998888877632 234689999 8999999874 68899
Q ss_pred EEeCCCC
Q 006126 629 VIEPLES 635 (660)
Q Consensus 629 iw~~~~~ 635 (660)
||++.-.
T Consensus 386 iwhytG~ 392 (566)
T KOG2315|consen 386 IWHYTGS 392 (566)
T ss_pred EEEecCc
Confidence 9998654
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=2.1e-13 Score=128.02 Aligned_cols=207 Identities=12% Similarity=0.094 Sum_probs=156.4
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 390 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~ 390 (660)
..+|+|.+|++|+..+|.+..+..+.||.....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------- 44 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence 56788888888888888887777777776433321
Q ss_pred EEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC-CC--ceeeEeeccCCCeEEEEEeC
Q 006126 391 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TK--KTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 391 s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~-~~--~~~~~~~~~~~~v~~l~~sp 466 (660)
.+...++..|...|+.++|+|.. .|++|+.|..-++|... .+ ++.-.+..++...+++.|+|
T Consensus 45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence 24556778899999999999999 99999999999999983 33 33444556889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-----C---
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-----T--- 537 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-----~--- 537 (660)
.++.+++|+....|.||-++....- -.-+.+...+. +.|.++.|+|++-++++ +.|+..+|+..- .
T Consensus 111 ~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 111 KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred cCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC
Confidence 9999999999999999988763211 00000111222 78999999999999998 589999988742 1
Q ss_pred ----------CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 538 ----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 538 ----------~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
|..+..+. ...+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 186 p~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 11222221 236789999999999999999999999999987664
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.5e-13 Score=146.11 Aligned_cols=212 Identities=15% Similarity=0.066 Sum_probs=145.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe--EEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~--I~iwd~ 443 (660)
.|...+.+++|+ |+.|+.++ + ..|++||+.+++.... .........++|+||| .|+.++ .+|. |++||+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 477789999999 88888876 3 3699999988764322 2122233468999999 776654 6775 455577
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
.+++ ...+..+...+....|+|||+.|+.++ .+|...+|++..... ... .. ++. . .+..|+|||+++
T Consensus 280 ~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~~~SpDG~~i 347 (429)
T PRK01742 280 NGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSAQISADGKTL 347 (429)
T ss_pred CCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCccCCCCCCEE
Confidence 6665 455666777788999999999877665 578888888754211 111 11 222 2 457899999999
Q ss_pred EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC--CCCeeEEEeecccccCCCCcC
Q 006126 523 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT--STLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 523 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~--~~~~~~~~~~~~~~~~~gh~~ 600 (660)
+......+.+||+.+++..... .. ....++.|+|||++|+.++.++.+.+|++ .+|+....+.. | .
T Consensus 348 a~~~~~~i~~~Dl~~g~~~~lt-~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~-------~-~ 415 (429)
T PRK01742 348 VMINGDNVVKQDLTSGSTEVLS-ST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG-------S-D 415 (429)
T ss_pred EEEcCCCEEEEECCCCCeEEec-CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC-------C-C
Confidence 8854456777999888754322 21 12356789999999999999998888875 35666666652 2 3
Q ss_pred cccceEEEEEec
Q 006126 601 LELYPLVIAAHP 612 (660)
Q Consensus 601 ~~v~~~~v~~sp 612 (660)
..+. .++|+|
T Consensus 416 g~~~--~p~wsp 425 (429)
T PRK01742 416 GQVK--FPAWSP 425 (429)
T ss_pred CCCC--CcccCC
Confidence 3344 789998
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=5.3e-13 Score=145.15 Aligned_cols=255 Identities=13% Similarity=0.084 Sum_probs=176.7
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 006126 374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 441 (660)
Q Consensus 374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iw 441 (660)
.|...|..++.+ +.++++|+ ||+|++|+... .+...++......+.++...+.+ .+|+++.||.|.+.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 588888888888 57999999 99999999864 12334444567789999999999 99999999999999
Q ss_pred eCCCCc-------eeeEeecc-CCCe-EEEEEeC-CCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe
Q 006126 442 CPCTKK-------TKAKLKGH-QNRI-TCLAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 510 (660)
Q Consensus 442 d~~~~~-------~~~~~~~~-~~~v-~~l~~sp-~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 510 (660)
++.... +......+ .+.+ ..-+|.. .+. .++.+..-+.|..||++........ + ....| +.|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l--k-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL--K-NQLRH----GLV 1198 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh--h-cCccc----cce
Confidence 987521 11111111 2223 3333433 333 6888888999999999984322211 1 11223 689
Q ss_pred EEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC---CEEEEEe--cCCeEEEEECCCCee
Q 006126 511 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG---KCIYVSC--KSGHVKVFDTSTLEL 584 (660)
Q Consensus 511 ~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~--~dg~I~iwd~~~~~~ 584 (660)
++++.+|.+.++++| ..|.+.+||++=+.++..+..+ +..++..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999997 7799999999999888888664 46888888887643 4555544 468899999999977
Q ss_pred EEEeecccc-------cCCC--CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 585 RCQINLTAY-------AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 585 ~~~~~~~~~-------~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
...+..... .+.. .....+......+.. .+.++.+|+.|+.||.||....+.
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCccc
Confidence 766654310 1110 001112222233333 456899999999999999988765
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=7.8e-15 Score=143.78 Aligned_cols=281 Identities=11% Similarity=0.115 Sum_probs=213.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
......+.|+.+|++|+.|+..|.+-.+||.+...... + .-...|.++.|- ..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---------------------i---~v~Etv~Dv~~LHneq~ 184 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---------------------I---NVMETVRDVTFLHNEQF 184 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee---------------------e---ehhhhhhhhhhhcchHH
Confidence 45678899999999999999999999999887765221 0 234557788887 567
Q ss_pred EEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 389 LFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 389 l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
+|++....+.|||-. |..+..++.+ ..|..+.|-|.. +|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-
T Consensus 185 ~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY 262 (545)
T ss_pred HHhhhhceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc
Confidence 777778999999965 6666666544 457789999999 9999999999999999999999999888889999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecC
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~ 546 (660)
+..+-+|...|+|.+|..... .++- ....|. ++|.++++.++|+|+++ |.|..++|||++....+.++..
T Consensus 263 NaVih~GhsnGtVSlWSP~sk-----ePLv-KiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSK-----EPLV-KILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cceEEEcCCCceEEecCCCCc-----chHH-HHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 889999999999999999883 3333 234565 79999999999999999 7999999999998887777643
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEE-CCCCeeEEEeecccccCCCCc-CcccceEEEEEecCCCCEEEEEeCC
Q 006126 547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFD-TSTLELRCQINLTAYAQPGTI-SLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 547 ~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd-~~~~~~~~~~~~~~~~~~gh~-~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
..+...++||..| +++.+....|.||. .-.+..-...... .|. ...| ..+.|.| -...|-.|-..
T Consensus 334 ---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm-----~H~~~~~V--~~l~FcP-~EDvLGIGH~~ 400 (545)
T KOG1272|consen 334 ---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYM-----NHRCGGPV--EDLRFCP-YEDVLGIGHAG 400 (545)
T ss_pred ---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchh-----hhccCccc--ccceecc-HHHeeeccccC
Confidence 4566778887655 33334556799995 2222211111111 111 2234 4899999 67888888888
Q ss_pred CeEEEEeCCCCceec
Q 006126 625 GRVHVIEPLESEVEW 639 (660)
Q Consensus 625 g~v~iw~~~~~~~~w 639 (660)
|.-.|.-+.+|++-+
T Consensus 401 G~tsilVPGsGePN~ 415 (545)
T KOG1272|consen 401 GITSILVPGSGEPNY 415 (545)
T ss_pred CceeEeccCCCCCCc
Confidence 887888888887643
No 220
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.58 E-value=3.1e-12 Score=127.43 Aligned_cols=327 Identities=9% Similarity=0.035 Sum_probs=214.6
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
-...+.+||.|.+|++....| |.+|+... -..+.++. ...|..+.|||.++||.+-+..+.+ +-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~pe-- 98 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EPE-- 98 (561)
T ss_pred chhheeecCcchheehhhccc-eEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---Chh--
Confidence 344469999999999887755 78888764 33455542 4579999999999999998765543 100
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCC--eE-EEEEe--CCEEEEEeCCcEEEEECCCCeE-EEEEc-CCCC
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS--IS-CFALR--GSHLFSASGGKISIFSLETFQT-LATFA-NPPP 416 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~v~~s--~~~l~s~~dg~I~iwd~~~~~~-~~~~~-~~~~ 416 (660)
.........-.+.+||..+|.++.... +...+ .+ -+.|+ +.++|-.....+.|+++ ++.. ...+. -...
T Consensus 99 -~e~sp~~~~n~~~vwd~~sg~iv~sf~--~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~ 174 (561)
T COG5354 99 -IEISPFTSKNNVFVWDIASGMIVFSFN--GISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPV 174 (561)
T ss_pred -hccCCccccCceeEEeccCceeEeecc--ccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcccc
Confidence 000000111135788888888776443 22222 33 56777 55655555778999997 3322 11121 1235
Q ss_pred CeEEEEEcCCC---eEEE-----EeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-----------CC
Q 006126 417 IATYFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-----------AD 477 (660)
Q Consensus 417 ~v~~v~~sp~~---~l~s-----~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-----------~d 477 (660)
.+....|+|.+ .|+. .+.++.+++|.+..+..+.+-.-....-..+.|++.|+++++-. ..
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 68889999975 4443 45677899999887766654433333445678999998876421 12
Q ss_pred CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126 478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 478 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 554 (660)
..+.+++++.. .+. ...+-. ++|...+|.|.++.+++ | .+-.+.++|++.. ....+. ...-.
T Consensus 255 snLyl~~~~e~------~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rN 319 (561)
T COG5354 255 SNLYLLRITER------SIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRN 319 (561)
T ss_pred ceEEEEeeccc------ccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Ccccc
Confidence 45778887742 222 111222 68999999999998887 3 6788999999654 433332 44556
Q ss_pred EEEEccCCCEEEEEecC---CeEEEEECCCCeeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEEe------CC
Q 006126 555 YATYSCDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TN 624 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s------~D 624 (660)
.+.|+|.+++++.++-| |.|-+||........ .+.. .+..-+.|+| |++++.+.. .|
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------~n~s~~~wsp-d~qF~~~~~ts~k~~~D 386 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------LNTSYCDWSP-DGQFYDTDTTSEKLRVD 386 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeec------------CCceEeeccC-CceEEEecCCCcccccC
Confidence 78899999999997776 789999988765444 4431 1233689999 899887764 37
Q ss_pred CeEEEEeCCCCce
Q 006126 625 GRVHVIEPLESEV 637 (660)
Q Consensus 625 g~v~iw~~~~~~~ 637 (660)
..|.||++...+.
T Consensus 387 n~i~l~~v~g~~~ 399 (561)
T COG5354 387 NSIKLWDVYGAKV 399 (561)
T ss_pred cceEEEEecCchh
Confidence 8899999977643
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3.7e-12 Score=119.84 Aligned_cols=232 Identities=14% Similarity=0.237 Sum_probs=156.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-C------CcEEEEec
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-T------ATHKLWKW 340 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-d------g~i~vw~~ 340 (660)
++|..|..-++.|..+| .+||+.+..++..... + +.+.+.-+..---.++|+-.+. + ..+.|||
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~---~----~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD- 81 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ---F----IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD- 81 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhc---c----ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-
Confidence 47788888888887766 8999987422111111 1 1222222222222345554432 2 2455554
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECC-CCeEEEEEcC--CCCC
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFAN--PPPI 417 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~-~~~~~~~~~~--~~~~ 417 (660)
-....++..+ ....+|.+|.+..+.|++.-.+.|.+|... ..+.++.+.. .+.+
T Consensus 82 --------------------D~k~~~i~el---~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 82 --------------------DLKERCIIEL---SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred --------------------cccCcEEEEE---EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence 3333333322 366789999999889999999999999987 4555655542 2334
Q ss_pred eEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCCCc-EEEEEcCCCeeee
Q 006126 418 ATYFILLPQD-LFAF-GFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLC 492 (660)
Q Consensus 418 v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~-i~vwd~~~~~~~~ 492 (660)
..+++-..+. .|+. |-.-|.|.|-|+...+. -..+..|.+.|.|++.+-+|..+|++|..|+ |||||..+|+.+
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l- 217 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL- 217 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe-
Confidence 4333333333 4544 44568999999886554 3667889999999999999999999999997 899999997644
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 538 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~ 538 (660)
+....|... ..|.+++|||++.+|+++ ..|+++|+.++..
T Consensus 218 ----~E~RRG~d~--A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 218 ----QELRRGVDR--ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----eeeecCCch--heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 334455444 689999999999999995 6699999998753
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=139.05 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=147.7
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~---d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
.|.++|.. +...+.+..+...+.+..|+||| .|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 78888875 45556666778889999999999 7776653 468999999988653 455566677889999999987
Q ss_pred E-EEeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec--CcEEEEeCCCCceeeee
Q 006126 472 V-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 472 ~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d--~~i~iwd~~~~~~~~~~ 544 (660)
+ +.+.++. |++||+.++... . + ..+. .......|+|||+.|+.. .+ ..|++||+..+.. ..+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~---~---L-t~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTT---R---L-TDSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred EEEEecCCCceEEEEECCCCceE---E---c-cCCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence 6 4455554 777898875421 1 1 1222 345678999999999873 22 3689999876554 344
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
.. +...+....|+|||++|+..+.+ ..|.+||+.++.. ..+.. + ..+. .+.|+| ||++|+..
T Consensus 330 t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~---~~~~--~p~~sp-DG~~i~~~ 394 (435)
T PRK05137 330 SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------G---FLVE--GPTWAP-NGRVIMFF 394 (435)
T ss_pred ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------C---CCCC--CCeECC-CCCEEEEE
Confidence 32 24456678999999999876653 3688899866543 33321 1 1223 789999 89988766
Q ss_pred eCC------CeEEEEeCCCCce
Q 006126 622 LTN------GRVHVIEPLESEV 637 (660)
Q Consensus 622 s~D------g~v~iw~~~~~~~ 637 (660)
+.+ ..+.++++..+..
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EccCCCCCcceEEEEECCCCce
Confidence 543 2577888866544
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1.9e-13 Score=136.47 Aligned_cols=245 Identities=16% Similarity=0.220 Sum_probs=162.5
Q ss_pred eEEEEEe--CCEEEEEeCCcEEEEECCCCeEE----E--EEcCCCCC---eEEEEEcCCC-eEEEEeCCCeEEEEeCCCC
Q 006126 379 ISCFALR--GSHLFSASGGKISIFSLETFQTL----A--TFANPPPI---ATYFILLPQD-LFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 379 v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~----~--~~~~~~~~---v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~ 446 (660)
+....++ |++|+..-...+.+|+...+... . .+.+.... .+...-.|.+ -++.|-.-|.|.+.|....
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3344444 66776666677888887643211 1 12221111 1112224566 7888999999999997763
Q ss_pred ceeeEeec----cCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeee-----------ceeeeeeeeccC---C--
Q 006126 447 KTKAKLKG----HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC-----------SKFLHSFQTGLV---P-- 505 (660)
Q Consensus 447 ~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~---~-- 505 (660)
+..+.+.. .+..|+|+.|-|. ...++++-.+|.+++||..--.... ...+.+ ...+. |
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t-~ksk~~rNPv~ 284 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT-SKSKKTRNPVA 284 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee-eeccccCCccc
Confidence 32222211 3478999999984 4456667789999999763211000 000000 00000 0
Q ss_pred ----CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 506 ----ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 506 ----~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
..+.|+..+|+|||++||+ +.||.++|||..+.+++..+..- -+...|++|||||+||++|++|.-|.||.+.
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 0157889999999999999 89999999999988876665432 5779999999999999999999999999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecC----------------------------------CC-----------
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------EP----------- 615 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~----------------------------------d~----------- 615 (660)
..+++..=. || .-||..|+|.|- ++
T Consensus 363 erRVVARGq-------GH---kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~ 432 (636)
T KOG2394|consen 363 ERRVVARGQ-------GH---KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS 432 (636)
T ss_pred cceEEEecc-------cc---ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence 998887733 33 345557887620 01
Q ss_pred --CEEEEEeCCCeEEEEeCCCCc
Q 006126 616 --NRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 616 --~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
-.|.+.+.|-.+.+||+....
T Consensus 433 v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 433 VTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred eEEEeecccccceEEEEecchhh
Confidence 147788999999999997654
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.5e-14 Score=141.77 Aligned_cols=275 Identities=9% Similarity=0.141 Sum_probs=201.7
Q ss_pred CCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126 263 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 263 ~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~ 342 (660)
....-+.++.+|++++.|+.-|.+..+|+.+ ..+.. .+. -...|.++.|-.+.+++|++-. ..+.|||-..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----~~L~~-Ei~---v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----KKLHF-EIN---VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNG 200 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc----ceeee-eee---hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCC
Confidence 3344458999999999999999999999985 33221 121 2568999999999998777643 4555555332
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIAT 419 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~ 419 (660)
.+.. ++ .....|..+.|- -. +|++++ .|.++.-|+.+|+.+..+....+.+.
T Consensus 201 tElH-------------------Cl------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 201 TELH-------------------CL------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred cEEe-------------------eh------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 2210 11 134567778888 44 456666 69999999999999999988888899
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 420 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
.+.-+|-+ .+-+|...|+|.+|.....+++..+-.|.++|.++++.++|+++++.+.|..++|||++.. ..+++
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-----~ql~t 330 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-----YQLHT 330 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-----cccce
Confidence 99999999 9999999999999999999998888889999999999999999999999999999999983 23332
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
.... .....+++|..| .|+.|....|.||.= -.+. .-..+..+.-.++|..+.|.|-.+.|-.|-..|.-.
T Consensus 331 ~~tp-----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 331 YRTP-----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred eecC-----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 3332 356778888655 455577778999952 2221 111222222256899999999888888776666444
Q ss_pred EEECCCC
Q 006126 576 VFDTSTL 582 (660)
Q Consensus 576 iwd~~~~ 582 (660)
|.=.-.|
T Consensus 405 ilVPGsG 411 (545)
T KOG1272|consen 405 ILVPGSG 411 (545)
T ss_pred EeccCCC
Confidence 4333333
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=4.8e-12 Score=130.32 Aligned_cols=286 Identities=16% Similarity=0.142 Sum_probs=173.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCcee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 346 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~ 346 (660)
..|+|||+++++++.||.|.++|+.+ ......+. -.....++++|+||++++++.. ++.+.++|.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLAT---GKVVATIK-----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEe-----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 47899999999999999999999986 33444443 2567889999999999998765 789998887776542
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-eC-CcEEEEECCCCeEEE-EEcCCCCCeEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-SG-GKISIFSLETFQTLA-TFANPPPIATYF 421 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~d-g~I~iwd~~~~~~~~-~~~~~~~~v~~v 421 (660)
.. ..++... .......+..+..+ ...++.. -| +.|.+.|....+... +...........
T Consensus 114 ~~------------I~~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 114 KT------------IPTGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EE------------EE--EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred ee------------ccccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 21 0000000 00123456666666 4434444 44 888888877654332 222334556688
Q ss_pred EEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEee----ccCCCeEEEEEeCC----------CCEEEEEeCCCcEEEEEc
Q 006126 422 ILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLS----------LNVLVSSGADAQLCVWDA 485 (660)
Q Consensus 422 ~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~----~~~~~v~~l~~sp~----------~~~l~s~s~dg~i~vwd~ 485 (660)
.|+|++ +++. ...+..|-++|..+++.+..+. .|..++..+ .+|. +...++.-....+.+||.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchh
Confidence 999999 5544 5567799999999987776553 244444433 2332 222222222335556787
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
.+++........ +.-.-+..+|+++++.+. ..++|.++|.++.+.+.++.... ...+..+.|++
T Consensus 257 ~~wkvv~~I~~~----------G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~ 325 (369)
T PF02239_consen 257 YAWKVVKTIPTQ----------GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNP 325 (369)
T ss_dssp TBTSEEEEEE-S----------SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-T
T ss_pred hcCeEEEEEECC----------CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECC
Confidence 776544332222 223678889999999984 34789999999998887775422 34599999999
Q ss_pred CCCEEEEEecC--CeEEEEECCCCeeEEEee
Q 006126 561 DGKCIYVSCKS--GHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 561 dg~~l~sg~~d--g~I~iwd~~~~~~~~~~~ 589 (660)
||+++..+..+ +.|.|||..+.+.+..++
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99988776665 369999999999998887
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.7e-12 Score=136.02 Aligned_cols=217 Identities=15% Similarity=0.071 Sum_probs=141.3
Q ss_pred cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC
Q 006126 285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 364 (660)
Q Consensus 285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (660)
.|.+||..+ ...+.++ .|...+.+.+|+|||+.|+..+..+.
T Consensus 183 ~l~~~d~dg----~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g------------------------------ 224 (435)
T PRK05137 183 RLAIMDQDG----ANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANG------------------------------ 224 (435)
T ss_pred EEEEECCCC----CCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCC------------------------------
Confidence 677888763 3333332 16778999999999999888764210
Q ss_pred ceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCC--eEEE
Q 006126 365 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDS--SILV 440 (660)
Q Consensus 365 ~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~--~I~i 440 (660)
+..|.+||+.+++.. .+..+...+...+|+||| .| ++.+.++ .|++
T Consensus 225 -----------------------------~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 225 -----------------------------RPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred -----------------------------CCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 112334444444332 222334455678999999 55 4555555 4888
Q ss_pred EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
||+.+++. ..+..+........|+|||+.++..+. +| .|++||+.++.. .. +..+ . ..+....|+|
T Consensus 275 ~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~---lt~~-~---~~~~~~~~Sp 343 (435)
T PRK05137 275 MDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RR---ISFG-G---GRYSTPVWSP 343 (435)
T ss_pred EECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EE---eecC-C---CcccCeEECC
Confidence 89987765 445556666778899999999887764 33 588888876432 11 2111 1 3466788999
Q ss_pred CCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC------CeEEEEECCCCee
Q 006126 518 DQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 584 (660)
Q Consensus 518 ~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d------g~I~iwd~~~~~~ 584 (660)
||+.|+. +.+ ..|.+||+..+. ...+.. ...+....|+|||++|+..+.+ ..++++|+..+..
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 9999987 322 368889985544 344432 2346778999999998875543 3688888876654
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.8e-12 Score=138.32 Aligned_cols=213 Identities=18% Similarity=0.091 Sum_probs=144.7
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
..|.+||.. +...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +..+.+...++.|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 368899985 44445566677788999999999 77776643 479999998876533 3334455567899999998
Q ss_pred EEE-EeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEeCCCCceeee
Q 006126 471 LVS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 543 (660)
Q Consensus 471 l~s-~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~--~i~iwd~~~~~~~~~ 543 (660)
++. .+.+| .|++||+.+++.. . + ..+. ......+|+|||++|+.+ .++ .|+++|+.+++.. .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~---~---l-t~~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~ 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT---R---L-TNHF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE---E---C-ccCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence 764 45555 5999999885421 1 1 1222 344678999999999874 333 4778888776643 3
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
+... .......+|+|||++|+..+.++ .|++||+.+++.. .+.. + . ... ...|+| ||++++.
T Consensus 331 lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~--~-~~~--~p~~sp-dG~~i~~ 395 (433)
T PRK04922 331 LTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------G--S-LDE--SPSFAP-NGSMVLY 395 (433)
T ss_pred eecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------C--C-CCC--CceECC-CCCEEEE
Confidence 3221 33345689999999998765443 6999999888755 3321 1 1 122 578999 8998877
Q ss_pred EeCC---CeEEEEeCCCC
Q 006126 621 GLTN---GRVHVIEPLES 635 (660)
Q Consensus 621 ~s~D---g~v~iw~~~~~ 635 (660)
.+.+ +.|.++++..+
T Consensus 396 ~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 396 ATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEecCCceEEEEEECCCC
Confidence 6653 45778888544
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.9e-12 Score=136.04 Aligned_cols=212 Identities=12% Similarity=0.113 Sum_probs=142.9
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
.|.+||...... +.+..+...+.+.+|+||| .|+..+ .+..|++||+.+++... +....+.+..+.|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 688898875443 3444566788999999999 776544 34579999998886433 22233345568999999988
Q ss_pred EEE-eCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeee
Q 006126 472 VSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQL 544 (660)
Q Consensus 472 ~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~ 544 (660)
+.. +.+| .|++||+.+++.. + +..++ ..+....|+|||+.|+. +. ++ .|+++|+.++... .+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~-----~-lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l 326 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIR-----Q-VTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI 326 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEE-----E-ccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee
Confidence 865 4454 5889999885421 1 22222 35678999999999887 43 33 4666677666543 33
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
.. +.......+|+|||++|+..+.+ ..|++||+.+++... +.. ..... ...|+| ||.+|+.+
T Consensus 327 t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~---------~~~~~--~p~~Sp-DG~~i~~~ 391 (429)
T PRK03629 327 TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD---------TFLDE--TPSIAP-NGTMVIYS 391 (429)
T ss_pred ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC---------CCCCC--CceECC-CCCEEEEE
Confidence 32 23445678999999999876553 358899999887443 321 11112 578999 89999999
Q ss_pred eCCCe---EEEEeCCCC
Q 006126 622 LTNGR---VHVIEPLES 635 (660)
Q Consensus 622 s~Dg~---v~iw~~~~~ 635 (660)
+.|+. +.+|++..+
T Consensus 392 s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 392 SSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EcCCCceEEEEEECCCC
Confidence 88764 677777443
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=137.68 Aligned_cols=232 Identities=16% Similarity=0.161 Sum_probs=159.1
Q ss_pred EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe-eccCCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q 006126 408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSL--SLNVLVSSGADAQLCVW 483 (660)
Q Consensus 408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vw 483 (660)
...+.+|.+-|+|+.|+.+| +|++|++|-.+.|||.-..+.++.+ .+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35678999999999999999 9999999999999999888888777 46999999999998 56789999999999999
Q ss_pred EcCCCeee-----eceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCcee-------eeecC-CC
Q 006126 484 DAVGWKKL-----CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHT-------SQLVP-DK 548 (660)
Q Consensus 484 d~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~-------~~~~~-~~ 548 (660)
|+...+.. ...... ....|. ..|..++-.|++ ..+.+ +.||+|+-+|++..... ..+.. ..
T Consensus 123 dl~~~~~~~~d~~~~~~~~-~~~cht---~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTR-CWSCHT---DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred ecccccccccccCccchhh-hhhhhh---hhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 99852210 011222 344566 578889999998 44445 69999999999853211 01100 00
Q ss_pred CCCCeEEEEEccCC-CEEEEEecCCeEEEEECCC--------CeeEEEee----cccccCCCCcC-------ccc-ceEE
Q 006126 549 MDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST--------LELRCQIN----LTAYAQPGTIS-------LEL-YPLV 607 (660)
Q Consensus 549 ~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~--------~~~~~~~~----~~~~~~~gh~~-------~~v-~~~~ 607 (660)
.--...++.++|.. .+|++|+.|-..++||.+. +.....-+ ...+...||.. ..+ -++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 12346688899854 6889999999999999432 11000000 01122334421 111 1456
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 608 IAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
+.|+| +|.-|+..-....|++++++.+++...-.+|
T Consensus 279 vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~~~y~~~ 314 (758)
T KOG1310|consen 279 VTFNP-NGTELLVSWGGEHVYLFDVNEDKSPTPYFLP 314 (758)
T ss_pred EEECC-CCcEEEEeeCCeEEEEEeecCCCCceeecCc
Confidence 89999 6765544444457999999998875444444
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=6.8e-13 Score=124.67 Aligned_cols=215 Identities=12% Similarity=0.091 Sum_probs=158.1
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 006126 413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 488 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~ 488 (660)
....+|+|.+|++|. .++.+.....|.||.....+ ..+++..|...|+++.|+|..+.|++++.|..-++|....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999 99999999999999877654 67888999999999999999999999999999999998443
Q ss_pred eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEE
Q 006126 489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
.. ..+.. ....+. ...+++.|+|.++.++++ ....|.||-++...- +.......+...|+++.|+|++-++
T Consensus 88 ~~--Wkptl-vLlRiN---rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 88 GT--WKPTL-VLLRIN---RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred Ce--eccce-eEEEec---cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 22 12222 122333 579999999999999995 667788887754321 1111122347889999999999999
Q ss_pred EEEecCCeEEEEECCCCeeEEEeecccc---cC-------CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 566 YVSCKSGHVKVFDTSTLELRCQINLTAY---AQ-------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 566 ~sg~~dg~I~iwd~~~~~~~~~~~~~~~---~~-------~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
++|+.|+..|||..--......-.+.+. .+ .+...+. +..+.|+| +|+.|+-.+.|++|.+=|...+
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw--vh~v~fs~-sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW--VHGVLFSP-SGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc--eeeeEeCC-CCCEeeEecCCCceEEeecCCC
Confidence 9999999999997532211111000000 00 0011333 44999999 8999999999999999998776
Q ss_pred c
Q 006126 636 E 636 (660)
Q Consensus 636 ~ 636 (660)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 5
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=2.2e-10 Score=118.24 Aligned_cols=285 Identities=16% Similarity=0.143 Sum_probs=177.0
Q ss_pred EEEEeCC----CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----CCcEEEEeccCCceeee
Q 006126 277 AVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLE 348 (660)
Q Consensus 277 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----dg~i~vw~~~~~~~~~~ 348 (660)
++.|+.+ +.|.+|++... .+.+....... -......++++|++++|.++.. ++.|..|++......+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~--~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEE--TGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETT--TTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCC--CCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE
Confidence 3445555 68999888431 34443322110 2456677999999999999887 46888877665411000
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-CeEEEE---Ec--------
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA-------- 412 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~~~~~---~~-------- 412 (660)
.+.... ........++++ +++|+++. +|.|.++++.. |..... +.
T Consensus 78 -----------------~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 78 -----------------LLNSVP--SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp -----------------EEEEEE--ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred -----------------Eeeeec--cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 111110 122344567777 88888887 79999999986 443332 21
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCc--ee--eEee-ccCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q 006126 413 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCV 482 (660)
Q Consensus 413 --~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~--~~--~~~~-~~~~~v~~l~~sp~~~~l~s~s-~dg~i~v 482 (660)
.......++.++|++ ++++.. ....|.+|++.... .. ..+. ........+.|+|+++++.+.. .+++|.+
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 123456789999999 555543 44589999987654 32 2222 2446678999999999886665 4778999
Q ss_pred EEcC--CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCce--eeeecCCCCCCCeE
Q 006126 483 WDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPDKMDLPIT 554 (660)
Q Consensus 483 wd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~~~~~v~ 554 (660)
+++. ++.......+.+...+... ......++++|||++|+++ ..+.|.+|++. +++. +..+.. ......
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr 295 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPR 295 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEE
T ss_pred EeecccCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCcc
Confidence 9998 4433222333322222221 0257889999999999985 56789999983 3433 333332 145588
Q ss_pred EEEEccCCCEEEEEec-CCeEEEEEC--CCCeeEEE
Q 006126 555 YATYSCDGKCIYVSCK-SGHVKVFDT--STLELRCQ 587 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~-dg~I~iwd~--~~~~~~~~ 587 (660)
.++++|+|++|+++.. ++.|.+|++ .+|.+...
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 9999999999998875 578999876 57776554
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.6e-12 Score=133.31 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=140.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE-eCCC--eEEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDS--SILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~-~~d~--~I~iwd~ 443 (660)
.+...+.+.+|+ |+.|+..+ +..|.+|++.+++.... ......+..+.|+||| .|+.. +.++ .|++||+
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 356678999999 78887654 24799999988764332 2223334568999999 66644 4444 5999999
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
.+++..+ +..+...+....|+|||+.|+..+.+ +. |.++|+.++.. ..+. .+. .......|+|||+
T Consensus 275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt----~~~---~~~~~~~~SpDG~ 343 (429)
T PRK03629 275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRIT----WEG---SQNQDADVSSDGK 343 (429)
T ss_pred CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEee----cCC---CCccCEEECCCCC
Confidence 8876544 44344567889999999998877764 44 55556666432 1111 111 2455789999999
Q ss_pred EEEE-Ee-c--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe---EEEEECCCCeeEEEeecccc
Q 006126 521 HLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH---VKVFDTSTLELRCQINLTAY 593 (660)
Q Consensus 521 ~l~~-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~---I~iwd~~~~~~~~~~~~~~~ 593 (660)
+++. +. + ..|++||+.++... .+.. ........|+|||++|+.++.++. ++++++. |+....+.
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~---- 414 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP---- 414 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc----
Confidence 9987 42 2 35899999887643 3432 122346789999999999888754 7778875 44444444
Q ss_pred cCCCCcCcccceEEEEEec
Q 006126 594 AQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp 612 (660)
+| ...+. ..+|+|
T Consensus 415 ---~~-~~~~~--~p~Wsp 427 (429)
T PRK03629 415 ---AT-DGQVK--FPAWSP 427 (429)
T ss_pred ---cC-CCCcC--CcccCC
Confidence 22 23344 788887
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=1.3e-12 Score=122.18 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=108.3
Q ss_pred EEEEEeCCCCEEEEEeC----------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--E-e
Q 006126 460 TCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 526 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~ 526 (660)
..+.|+|+|++|++-.. -+...+|.++... .+...+..... ++|.+++|+|+|+.+++ | .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 35679999988765433 1335555553321 22221222222 47999999999999876 3 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
++.|.+||++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+..... .
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------~--- 144 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------S--- 144 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---------C---
Confidence 6799999996 77766662 5677899999999999998754 6799999998888776541 1
Q ss_pred ceEEEEEecCCCCEEEEEeC------CCeEEEEeCC
Q 006126 604 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPL 633 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~------Dg~v~iw~~~ 633 (660)
.++.++|+| ||++|++++. |+.++||+..
T Consensus 145 ~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 145 DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 245899999 8999999874 7899999985
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=3.2e-10 Score=109.38 Aligned_cols=281 Identities=11% Similarity=0.059 Sum_probs=179.7
Q ss_pred CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEeccCCceeeeeeccceeEEEe
Q 006126 283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 359 (660)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 359 (660)
...|.+|++.+. .+.+....+-. +.+.++-++|+|++++|.++-.+ |.|.-|.++
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCc--ccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 366999999842 23333222222 67889999999999999988765 566666544
Q ss_pred cCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCC-CeEEEE--EcCCCCC----------eEEEE
Q 006126 360 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 422 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~-~~~~~~--~~~~~~~----------v~~v~ 422 (660)
..+|.+...-.......+-..++++ +++++++. .|.|.++-++. |..... ...|... +.+..
T Consensus 73 -~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 73 -PDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -CCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 3333321110000122333677888 88999988 69999999965 433222 1123333 77889
Q ss_pred EcCCC-eEEEEeC-CCeEEEEeCCCCceeeEee---ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC--Ceeeece
Q 006126 423 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 494 (660)
Q Consensus 423 ~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~--~~~~~~~ 494 (660)
+.|++ ++++..- --.|.+|++..|+....-. .....-+.|.|+|++++....++ +++|.+|.... ++...-.
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99999 6666553 3379999999776532211 24456788999999999877665 89999999987 3332223
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCC--CceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
.+.+++.+... ..+...+.++|||++|.++ ....|.+|.+.. +++...-....+........|+++|++|+++..
T Consensus 232 ~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 33333333221 1467789999999999997 345788887653 332211111123455778999999999998887
Q ss_pred C-CeEEEEECC--CCeeEEE
Q 006126 571 S-GHVKVFDTS--TLELRCQ 587 (660)
Q Consensus 571 d-g~I~iwd~~--~~~~~~~ 587 (660)
+ ..|.+|.++ +|++...
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 311 KSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCCcEEEEEEcCCCceEEec
Confidence 6 568888654 5655443
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5e-12 Score=134.35 Aligned_cols=210 Identities=16% Similarity=0.114 Sum_probs=136.9
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
..|.++|.. |...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 467777774 55555566677788999999999 77766643 369999999886543 3334455678899999998
Q ss_pred EEE-EeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEE--eCCCCceeee
Q 006126 471 LVS-SGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ 543 (660)
Q Consensus 471 l~s-~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iw--d~~~~~~~~~ 543 (660)
|+. .+.+|...+|.+ .++. ...+ ..+. .......|+|||+.|+. + .++...+| ++.++... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~l-t~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~ 322 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRL-TQSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-R 322 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEEC-CCCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-E
Confidence 874 567777666654 4422 1211 1222 34567889999999887 4 33444444 55555432 2
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
+... .......+|||||++|+..+.++ .|++||+.+++.... .. + . ... .+.|+| ||++|+.
T Consensus 323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~------~--~-~~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD------T--T-RDE--SPSFAP-NGRYILY 387 (427)
T ss_pred EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC------C--C-Ccc--CceECC-CCCEEEE
Confidence 2221 23344678999999999776654 699999998875432 21 1 1 122 689999 8998888
Q ss_pred EeCCC---eEEEEeC
Q 006126 621 GLTNG---RVHVIEP 632 (660)
Q Consensus 621 ~s~Dg---~v~iw~~ 632 (660)
++.++ .+.+.++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 77554 3445555
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=6.7e-12 Score=119.01 Aligned_cols=286 Identities=12% Similarity=0.103 Sum_probs=177.8
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceee-eecCC----------CCCCCCeEEEEEecCCC--EEEEEECCC
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPD----------NSFGGRVVRLIYSHSGD--FLVALTQTA 333 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~l~~----------~~h~~~V~~~~~spdg~--~l~s~s~dg 333 (660)
.+.|...|.+||+|..+|.|.++.-+..... +..- ..+.. -.-...|..+.|.++++ .++..+.|.
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 3588999999999999999999976542211 1111 11111 00134688899998764 567778899
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEc
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFA 412 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~ 412 (660)
+|++|.+........ +.-.. .++....+.++..- +.+. +-.+ ...+.+.+.
T Consensus 109 tiKlWKi~er~~k~~---------------~~~~~---~~~~~~~~~~lr~p----~~~~~~~~v------ea~prRv~a 160 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKE---------------GYNLP---EEGPPGTITSLRLP----VEGRHDLEV------EASPRRVYA 160 (433)
T ss_pred ceeeeeeeccccccc---------------ccccc---ccCCCCccceeece----eecccccee------eeeeeeecc
Confidence 999999865543211 00000 00122222222211 0000 1000 012344443
Q ss_pred -CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-e--eeEeecc-----CCCeEEEEEeCC-CCEEEEEeCCCcEE
Q 006126 413 -NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-T--KAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLC 481 (660)
Q Consensus 413 -~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-~--~~~~~~~-----~~~v~~l~~sp~-~~~l~s~s~dg~i~ 481 (660)
.|...|+++.++.|+ .++++ +|=.|-+|+++--. . +.-++.+ ..-|++..|+|. .+.++..+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 788889999999999 66655 57789999976322 1 1122222 346788899994 56788889999999
Q ss_pred EEEcCCCeee-e-ceeeeeeeeccC------CCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeeeecCCCC---
Q 006126 482 VWDAVGWKKL-C-SKFLHSFQTGLV------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM--- 549 (660)
Q Consensus 482 vwd~~~~~~~-~-~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~~--- 549 (660)
+-|++....- . .+... .+.... ...+.|..+.|+++|+|+++-.--+|++||+ ...+++.+++.+..
T Consensus 240 LcDmR~~aLCd~hsKlfE-epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFE-EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred Eeechhhhhhcchhhhhc-cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence 9999953210 0 00000 000000 0014688899999999999876689999999 45677777665321
Q ss_pred -------CC---CeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 550 -------DL---PITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 550 -------~~---~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
.. .-..++|+.++.++++|+..+.+++|+...|.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 12 23458999999999999999999999966553
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=5.7e-12 Score=117.90 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=106.9
Q ss_pred EEEEcCCC-eE-EEEeC--C-------CeEEEEeCCC-CceeeEeec-cCCCeEEEEEeCCCCEEEEE--eCCCcEEEEE
Q 006126 420 YFILLPQD-LF-AFGFD--D-------SSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVWD 484 (660)
Q Consensus 420 ~v~~sp~~-~l-~s~~~--d-------~~I~iwd~~~-~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~--s~dg~i~vwd 484 (660)
.+.|+|+| .| +.... | +...+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 67899999 33 33321 1 2344444422 233444433 34579999999999987654 4578999999
Q ss_pred cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126 485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
++. ..+.++. . ..++.+.|+|+|+++++ +. .|.|.+||+++.+.+.... ...++.++|+|
T Consensus 90 ~~~------~~i~~~~---~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsP 153 (194)
T PF08662_consen 90 VKG------KKIFSFG---T---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSP 153 (194)
T ss_pred Ccc------cEeEeec---C---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcC
Confidence 974 2333121 1 46789999999999998 42 4679999999888877763 34578999999
Q ss_pred CCCEEEEEec------CCeEEEEECCCCeeEEEee
Q 006126 561 DGKCIYVSCK------SGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 561 dg~~l~sg~~------dg~I~iwd~~~~~~~~~~~ 589 (660)
||++++++.. |+.++||+.. |+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998874 6889999985 66665543
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.1e-11 Score=132.26 Aligned_cols=198 Identities=18% Similarity=0.135 Sum_probs=135.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~ 443 (660)
.+...+.+.+|+ |+.|+.++ + ..|.+||+.+++... +........+..|+||| .++ +.+.++ .|++||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 466778899999 78888777 2 369999998877543 33334445578999999 554 555555 6999999
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
.+++. ..+..+........|+|||+.|+.++. +|. |+++|+.+++. ..+. ..+ ......+|+|||+
T Consensus 280 ~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 348 (433)
T PRK04922 280 GSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT--FQG-----NYNARASVSPDGK 348 (433)
T ss_pred CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee--cCC-----CCccCEEECCCCC
Confidence 88764 445555555677899999999887764 444 66677766432 1111 112 2344689999999
Q ss_pred EEEE-Eec-C--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEe
Q 006126 521 HLLS-IHE-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQI 588 (660)
Q Consensus 521 ~l~~-~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~ 588 (660)
+++. +.+ + .|.+||+.+++.. .+.. ........|+|||++++..+.+ +.|+++++..+ ....+
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence 9987 332 2 6999999887754 3332 2234567999999998877664 46888888644 34444
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=7.8e-12 Score=120.72 Aligned_cols=250 Identities=13% Similarity=0.074 Sum_probs=176.9
Q ss_pred CCCeEEEEEecCCC--EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCE
Q 006126 311 GGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~--~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 388 (660)
...|..++|.-+++ .+...+.|..+..+.+..... ...+|+..+-. ....+|..++..+..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg~ 117 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADGT 117 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCCE
Confidence 56788888876654 455555666666555544432 11234433211 345667777777566
Q ss_pred EEEEe-CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC--eEEEEeCC--CeEEEEeCCCCceeeEeec-----
Q 006126 389 LFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKG----- 454 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d--~~I~iwd~~~~~~~~~~~~----- 454 (660)
|++|- +|.+.+|..+.+. .+..+..+ .++..+.-++.. .+++|+.. ..+.+||+++.+.+..-+.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 66666 8999999988543 22233322 445566666666 67779988 7899999997744432221
Q ss_pred ----cCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126 455 ----HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 527 (660)
Q Consensus 455 ----~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d 527 (660)
-.-.++++.|-+. ...|++++.-+.+++||.+.++ .++..+.-.. ..++++...|+|++++++ .-
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE----NPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc----CcceeeeecCCCcEEEEeccc
Confidence 1124568889886 7889999999999999999754 4444233222 579999999999999997 77
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
+.+..||++.++....... +..+.|.++..+|.++++++++-|..|||+|+.+.+++..
T Consensus 269 g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred chhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999999988776333 2488999999999999999999999999999999666544
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=6.2e-12 Score=121.42 Aligned_cols=216 Identities=15% Similarity=0.128 Sum_probs=159.7
Q ss_pred CCEEEEEeCCCcEEEEeccCcC-CCcceeeeecCCCCCCCCeEEEEEecCCCEEEE-EECC--CcEEEEeccCCceeeee
Q 006126 274 ADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVA-LTQT--ATHKLWKWQSNKQSLEE 349 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s-~s~d--g~i~vw~~~~~~~~~~~ 349 (660)
.-.|++|-.+|.+.+|..+.+. .......+. -..++..+.-+|..+++++ ||.. ..+.+||++..+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~----- 184 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK----- 184 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeee-----cCCceeeeccCCCCCceEecCchhcccceeeeecccce-----
Confidence 3467788899999999987321 012222221 2456777777776665555 7777 889999998885
Q ss_pred eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C---CEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126 350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 423 (660)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~---~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~ 423 (660)
++|..+.-.--..-+ .-.-.++++.|- + ..|+++. -+.+++||...+ +++..|.....+++++..
T Consensus 185 -------qiw~aKNvpnD~L~L--rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 185 -------QIWSAKNVPNDRLGL--RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred -------eeeeccCCCCccccc--eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 467654322100000 112234566666 4 5788888 799999999875 467888888899999999
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
.|++ .|++|...+.+..||+++++.... +.+..+.|+++..+|.+.++++++-|+.+||+|+.+...+....+.
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK---- 331 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK---- 331 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh----
Confidence 9999 999999999999999999988876 8889999999999999999999999999999999995443333333
Q ss_pred ccCCCCCCeEEEEEecC
Q 006126 502 GLVPETTIVNHIQFHPD 518 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp~ 518 (660)
+.++++.+.++
T Consensus 332 ------s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 ------SRLTFILLRDD 342 (412)
T ss_pred ------ccccEEEecCC
Confidence 45677777654
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.5e-11 Score=120.94 Aligned_cols=324 Identities=11% Similarity=0.060 Sum_probs=207.1
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.+.|||-|.||++-...| |.+|--.. -..++.+. |. .|.-+.|||+.+||+|-+..-.+.=|+-..+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-----Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~--- 281 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-----HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG--- 281 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-----CC-CceeeecCCccceEEEecCCccccCcccCCC---
Confidence 369999999999998877 77887653 34555542 44 6999999999999999887543333331111
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
..+.+||..+|.+.+....-.....+ .-+.|| ++++|.-....|.||+..+..++..-.-.-.+|....|
T Consensus 282 -------~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 282 -------QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW 354 (698)
T ss_pred -------ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence 12356666666654433210011122 235788 77888777889999998775544332334567889999
Q ss_pred cCCC-eEEEEeCC-----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-------C---CcEEEEEcCC
Q 006126 424 LPQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-------D---AQLCVWDAVG 487 (660)
Q Consensus 424 sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-------d---g~i~vwd~~~ 487 (660)
+|.+ .||--+.. ..+.+-.+-+++.+++-.-|+-.-..+.|-.+|.+|+.--. . ..+-|+.++.
T Consensus 355 sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire 434 (698)
T KOG2314|consen 355 SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE 434 (698)
T ss_pred CCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec
Confidence 9999 77654322 25677777777777766555544456778888888875321 1 1244555554
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--Ee--cCcEEEEeCCC-C---ceeeeecCCCCCCCeEEEEEc
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH--EGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~--d~~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s 559 (660)
.. .++..+ .-. ..|...+|-|.|..+++ +. ..++.+|.+++ . +.+..+ .....+.+.|+
T Consensus 435 Kd----Ipve~v-elk----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfws 501 (698)
T KOG2314|consen 435 KD----IPVEVV-ELK----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWS 501 (698)
T ss_pred cC----CCceee-ecc----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEc
Confidence 21 222211 111 47889999999999887 33 35799998873 2 223333 25667889999
Q ss_pred cCCCEEEEEe---cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC------CCeEEEE
Q 006126 560 CDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVI 630 (660)
Q Consensus 560 ~dg~~l~sg~---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~------Dg~v~iw 630 (660)
|.|++++.+. ..|.+.++|+.-......-.+ .+ ...+.+.|.| .|+|++|++. |..-+||
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~---------eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~ 570 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP---------EH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIF 570 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchhhhhhccCc---------cc-cccccceECC-CCCEEEEeeehhhhccccceEEE
Confidence 9999998754 468899999985332222111 11 1134799999 7999999875 4456778
Q ss_pred eCCC
Q 006126 631 EPLE 634 (660)
Q Consensus 631 ~~~~ 634 (660)
+..-
T Consensus 571 tfqG 574 (698)
T KOG2314|consen 571 TFQG 574 (698)
T ss_pred Eeec
Confidence 7764
No 242
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3e-11 Score=128.47 Aligned_cols=212 Identities=14% Similarity=0.075 Sum_probs=138.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCCeEE--EEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSIL--VHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~~I~--iwd~ 443 (660)
.+...+.+.+|+ |+.|+..+ + ..|.+||+.+++... +......+.+.+|+||| .|+ +.+.++... ++|+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 466788899999 78888776 2 359999999887644 33334456688999999 665 566777644 4555
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
.++. ...+..+........|+|||+.++..+. +|...+|.+ .++.. ..+. ..+ .......|+|||+
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK 340 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence 5544 4555555556677889999999887664 456666655 34321 1111 112 2234678999999
Q ss_pred EEEE-EecC---cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccc
Q 006126 521 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY 593 (660)
Q Consensus 521 ~l~~-~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~ 593 (660)
+|+. +.++ .|.+||+.+++.. .+.. ........|+|||++|+.++.++ .+++.++ ++.....+..+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~-- 413 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ-- 413 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--
Confidence 9987 4333 6999999887754 3332 22346789999999998877653 4666666 35545544321
Q ss_pred cCCCCcCcccceEEEEEec
Q 006126 594 AQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp 612 (660)
...+. ..+|+|
T Consensus 414 ------~g~~~--~p~wsp 424 (427)
T PRK02889 414 ------GGDVR--EPSWGP 424 (427)
T ss_pred ------CCCCC--CCccCC
Confidence 22233 678887
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.2e-09 Score=112.76 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=155.0
Q ss_pred CeEEEEEe--CCEEEEEe-C----CcEEEEECCC--CeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC
Q 006126 378 SISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC 444 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~--~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~ 444 (660)
....++++ +++|.++. . +.|..|++.. ++. +............++++|++ .++++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 34556776 77777776 3 5788888765 333 33333344455679999999 666665 68899999998
Q ss_pred C-CceeeE---ee----------ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCe--eeeceeeeeeeeccCCCC
Q 006126 445 T-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 445 ~-~~~~~~---~~----------~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~ 507 (660)
. |..... +. .......++.|+|+|+++++... ...|.+|++.... ......+. ...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G----- 191 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG----- 191 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT-----
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC-----
Confidence 7 433222 21 12345789999999999887654 4579999997754 21111111 2222
Q ss_pred CCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--CCc--eeeeecCC---CC-CCCeEEEEEccCCCEEEEEec-CCeEEE
Q 006126 508 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLN--HTSQLVPD---KM-DLPITYATYSCDGKCIYVSCK-SGHVKV 576 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~--~~~--~~~~~~~~---~~-~~~v~~~~~s~dg~~l~sg~~-dg~I~i 576 (660)
.....++|+|+++++++ . .++.|.++++. ++. .++.+... .. ......++++|||++|+++.. ++.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 56889999999999988 4 67889999987 443 22222211 11 236788999999999988765 578999
Q ss_pred EECC--CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCC
Q 006126 577 FDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLES 635 (660)
Q Consensus 577 wd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~~~~ 635 (660)
|++. ++++...-... ........++++| +|++|+++. .++.|.+|+++..
T Consensus 272 f~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCC
Confidence 9993 34443221111 1112355899999 899988777 5679999987543
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=8.9e-11 Score=125.38 Aligned_cols=211 Identities=17% Similarity=0.096 Sum_probs=141.6
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
..|.++|... ...+.+..+...+.+.+|+||| .|+.++.+ ..|++||+.+++... +..+.+.+.++.|+|||+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 3688888754 3345555566678899999999 77766543 479999999876543 3345566777899999997
Q ss_pred EEEE-eCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeee
Q 006126 471 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQ 543 (660)
Q Consensus 471 l~s~-s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~ 543 (660)
|+.. +.++ .|++||+.++... . +. .+. .......|+|||+.|+. +. ++ .|+++|+.+++.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~---~---l~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT---R---LT-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE---E---CC-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 7654 4444 5888998875321 1 11 121 23456789999999886 42 22 6888898776643 3
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
+.. +...+....|+|+|++++.++.++ .|++||+.++.... +.. + .. . ....|+| |+++|+.
T Consensus 317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~------~--~~-~--~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD------T--GL-D--ESPSFAP-NGRMILY 381 (417)
T ss_pred eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC------C--CC-C--CCceECC-CCCEEEE
Confidence 332 245567889999999999888775 79999998865432 221 0 11 1 2568999 8888887
Q ss_pred EeCCC---eEEEEeCC
Q 006126 621 GLTNG---RVHVIEPL 633 (660)
Q Consensus 621 ~s~Dg---~v~iw~~~ 633 (660)
++.++ .+++.+..
T Consensus 382 ~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 382 ATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEeCCCcEEEEEEECC
Confidence 77654 35555543
No 245
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.40 E-value=5.8e-12 Score=126.04 Aligned_cols=213 Identities=16% Similarity=0.142 Sum_probs=154.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCcceee-eecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceee-
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL- 347 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~- 347 (660)
.|+|--+..|-..|.+.+.|... ..+.. +.....-.+..|+|+.|-|.+. .++++-.+|.+.++|..-.....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 56777888888889999988763 22211 1111111367899999999664 44455568999999763221110
Q ss_pred -----eeeccceeEEEecCCCC-ce-eeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126 348 -----EEENVNMESQLYQPSSK-LV-MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 417 (660)
Q Consensus 348 -----~~~~~~~~~~~~~~~~~-~~-~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~ 417 (660)
......+.+..|..... .. .+..+ -.+.|..++|+ |.+||+.+ ||.++|||..+.+++..++..-+.
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG 334 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG 334 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence 02222333333332221 11 11111 34578999999 99999999 999999999998888888888899
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC-----------------------------
Q 006126 418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----------------------------- 467 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----------------------------- 467 (660)
..|++|+||| +|++|+.|--|.||.+..++.+..=.+|++.|+.++|.|-
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 9999999999 9999999999999999999999998999999999999830
Q ss_pred ------C-------------CEEEEEeCCCcEEEEEcCCCee
Q 006126 468 ------L-------------NVLVSSGADAQLCVWDAVGWKK 490 (660)
Q Consensus 468 ------~-------------~~l~s~s~dg~i~vwd~~~~~~ 490 (660)
+ .++.+.+.|..+.+||+.....
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1467788899999999987443
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.3e-10 Score=121.21 Aligned_cols=214 Identities=14% Similarity=0.043 Sum_probs=140.5
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
.|.++|...+. .+.+..+...+....|+||| .|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876544 44555666778899999999 77665543 369999999886543 33334455678999999988
Q ss_pred EE-EeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeee
Q 006126 472 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 472 ~s-~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~ 544 (660)
+. .+.+| .|++||+.++... .+ ..+. .......|+|||+.++. + .+ ..|+++|+.+++... +
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~---~l----t~~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS---RV----TNHP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE---Ec----ccCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 74 44454 5888899885421 11 1222 34556889999998887 4 22 368888987776533 3
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
... ........|+|||++|+..+.+ + .|++||+.+++... +.. + .. .. ...|+| ||++++..
T Consensus 327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~------~--~~-~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD------T--SL-DE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 221 2233467899999999877653 3 58899999886533 221 1 11 11 468999 88988776
Q ss_pred eCC---CeEEEEeCCCCce
Q 006126 622 LTN---GRVHVIEPLESEV 637 (660)
Q Consensus 622 s~D---g~v~iw~~~~~~~ 637 (660)
+.+ ..|.++++..+..
T Consensus 392 ~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 392 TRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred EecCCceEEEEEECCCCce
Confidence 644 3477777754433
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=7.4e-10 Score=112.10 Aligned_cols=273 Identities=12% Similarity=0.107 Sum_probs=176.9
Q ss_pred CceeeEecCCCCEEEEEe-----C-----CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 006126 264 QSRESTSLPDADSAVCAK-----S-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 333 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~-----~-----dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg 333 (660)
......|||-|.+|.+=- . .-.+++|+++++.....++.. .... |+..|++|..+ ++--..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k------~Q~~-W~~qfs~dEsl-~arlv~n 146 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK------MQNG-WVPQFSIDESL-AARLVSN 146 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehh------hhcC-cccccccchhh-hhhhhcc
Confidence 444468999999887632 1 234789999852222222211 2333 89999999874 3333345
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C---CEEEEEe---C---CcEEEEECC
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS---G---GKISIFSLE 403 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~---~~l~s~~---d---g~I~iwd~~ 403 (660)
.+.+|+..+.+. .... -|...|..+.++ + ..+|+-- + +.|++|...
T Consensus 147 ev~f~~~~~f~~---------------------~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 147 EVQFYDLGSFKT---------------------IQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred eEEEEecCCccc---------------------eeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 677777654321 1111 266778888888 4 3444422 2 479999876
Q ss_pred CCeEEEEEc---CCCCCeEEEEEcCCC--eEE--EEeCCC---------eEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 404 TFQTLATFA---NPPPIATYFILLPQD--LFA--FGFDDS---------SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 404 ~~~~~~~~~---~~~~~v~~v~~sp~~--~l~--s~~~d~---------~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
-......+. -....-..+.|++-| +|+ +...|. ++++.++....+...+. -.++|.++.|+|+
T Consensus 203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPS 281 (566)
T ss_pred cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCC
Confidence 322221111 111222367898877 333 333343 68888887444444443 4789999999999
Q ss_pred CCEEEE--EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCcee
Q 006126 468 LNVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHT 541 (660)
Q Consensus 468 ~~~l~s--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~ 541 (660)
|+.+++ |-.-..+.+||++. .++..+.. ++-+++-|+|.|++++. | -.|.|.|||+.+.+++
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 987655 44567899999987 44443433 45678999999999987 5 3489999999998888
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECCCCeeEE
Q 006126 542 SQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRC 586 (660)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~~~~~~~ 586 (660)
..+.. ..-+-+.|+|||.++++++. |+.++||+.. |.++.
T Consensus 350 ~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 350 AKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred ccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 87743 34556899999999998875 6789999986 44443
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=8.7e-10 Score=117.64 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=105.6
Q ss_pred EEEEEcCCC-eEE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeee
Q 006126 419 TYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKL 491 (660)
Q Consensus 419 ~~v~~sp~~-~l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~ 491 (660)
...+|+||| .|+ +.+.++ .|+++|+.+++. ..+..+........|+|||+.++..+. ++ .|.++|+.+++..
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 357899999 554 455566 488889987764 344445556678899999998877664 33 4677787765421
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
.+. ..++ .....+|+|||++++. +. ++ .|.++|+.+++.. .+... .......|+|||++|+.
T Consensus 344 ---~Lt--~~g~-----~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 344 ---RLT--FEGE-----QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIY 409 (448)
T ss_pred ---EEe--cCCC-----CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEE
Confidence 111 1221 2345789999999987 43 33 5677888777653 33221 12224589999998887
Q ss_pred EecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 568 SCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 568 g~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
.+.+ | .+++++.. |.....+... ...+. ..+|+|
T Consensus 410 ~~~~~g~~~l~~~~~~-G~~~~~l~~~--------~g~~~--~p~Wsp 446 (448)
T PRK04792 410 STTYQGKQVLAAVSID-GRFKARLPAG--------QGEVK--SPAWSP 446 (448)
T ss_pred EEecCCceEEEEEECC-CCceEECcCC--------CCCcC--CCccCC
Confidence 6554 3 47778874 5555555421 22233 678887
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=4.6e-11 Score=128.87 Aligned_cols=184 Identities=11% Similarity=0.028 Sum_probs=144.3
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-----eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
.++.++.+..+.+||...+........ ... ..-+.++++.-++++|+.-+.|.+|+.... ..+. ...|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d----n~p~--~l~G 173 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED----NKPI--RLKG 173 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc----CCcc--eecc
Confidence 788888899999999887766555442 221 122345667778999999999999998831 2222 4678
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
|. +.|.++.++-||+++++ +.|.++++|++.+++..... .-.|...|..++|.|+ .++++++|.+.++|+.+.
T Consensus 174 He---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 174 HE---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT-GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred cC---CceEEEEEccCCcEEEEEecCcceeeeecccccccCcc-cccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence 98 79999999999999999 79999999999998876522 2258999999999998 999999999999997664
Q ss_pred CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 582 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.+ ...+. +|....++ .++.++ +....+|++.||.+++|+....
T Consensus 248 ~~-l~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 248 TQ-LEVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ce-ehhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 44 33444 55556677 888888 7788999999999999998754
No 250
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=3.1e-09 Score=111.66 Aligned_cols=277 Identities=11% Similarity=0.036 Sum_probs=173.0
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 400 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iw 400 (660)
.+..+++++.+|.+..+|..+++. +|....+... ...+...+..++.++ +|.+..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~~-----------~~~p~v~~~~v~v~~~~g~l~al 120 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR------------LWRVDLDERL-----------SGGVGADGGLVFVGTEKGEVIAL 120 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE------------eeeecCCCCc-----------ccceEEcCCEEEEEcCCCEEEEE
Confidence 366788888899998888877763 6654332211 112233466777777 9999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEEe
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG 475 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~s 475 (660)
|..+|+.+............... .++.++.++.++.++.||.++|+.+..+......+ .+.... +..++.++
T Consensus 121 d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~ 197 (377)
T TIGR03300 121 DAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGF 197 (377)
T ss_pred ECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEEC
Confidence 99999988776533221111111 23367778889999999999998877665432211 111122 24677888
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC---e-EEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
.++.+..+|.++|+........ ...+... ... + .+..+. ++..++++.++.++.||..+|+.+-..... .
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~ 271 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS---S 271 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC---C
Confidence 8999999999998654332221 0111000 000 0 111121 343333468899999999999876655321 1
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
..... .++..++.++.||.|+.+|..+|+.+...... + ..... .... .+..+++++.||.|+++|
T Consensus 272 -~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 272 -YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred -ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEEE
Confidence 11122 35678888889999999999999887765311 1 11111 1111 356888899999999999
Q ss_pred CCCCceeccCCCCc
Q 006126 632 PLESEVEWGKLPFT 645 (660)
Q Consensus 632 ~~~~~~~w~~~~~~ 645 (660)
..+++..|....+.
T Consensus 337 ~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 337 REDGSFVARLKTDG 350 (377)
T ss_pred CCCCCEEEEEEcCC
Confidence 99999988765443
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.9e-10 Score=118.44 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=133.7
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
.|.++|..... .+.+......+.+..|+||| .|+..+. ++ .|++||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 56677765443 34455566778899999999 7766543 33 69999998876432 22223344578899999987
Q ss_pred EE-EeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ec--CcEEEEeCCCCceeeee
Q 006126 472 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 472 ~s-~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~ 544 (660)
+. .+.+|. |++||+.+++.. . +. .+. ......+|+|||+.|+. + .+ ..|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~---~---lt-~~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT---R---IT-RHR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE---E---Cc-cCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 75 455664 778888875421 1 11 122 34567899999999887 4 23 358888887776533 3
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
... .......+|+|||++|+..+.+ + .|.++|+.+++... +.. + .. .. ...|+| ||++|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~~-d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--RL-DE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 221 2223457899999998876653 3 46667888876533 221 1 11 11 458999 78887765
Q ss_pred eCC-Ce--EEEEeCC
Q 006126 622 LTN-GR--VHVIEPL 633 (660)
Q Consensus 622 s~D-g~--v~iw~~~ 633 (660)
+.+ |. +++++..
T Consensus 411 ~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 411 TTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECC
Confidence 543 43 6667763
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=7e-09 Score=102.77 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=129.9
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-eEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
|++++..+.|...+.+...+-.++. ++...|.-..+..++ -++.|..|| .+-|+|.++++ ++.+...-+.|.++.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~ 408 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK 408 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence 9999999999999998876655543 566778888888888 899999999 89999998775 455666778999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-----ecCcEEEEeCCCC
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTL 538 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-----~d~~i~iwd~~~~ 538 (660)
.+|+|++++.+.....+.+.|+.++... .+ ..... +-|+.+.|||+++++|-+ ....|+++|+..+
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~---~i---dkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVR---LI---DKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCee---Ee---ccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 9999999999999999999999997531 11 12222 579999999999999975 3357999999887
Q ss_pred ceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 539 NHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
+.....++ ...=.+-+|.|||++|+-
T Consensus 480 Kiy~vTT~---ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 480 KIYDVTTP---TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eEEEecCC---cccccCcccCCCCcEEEE
Confidence 77655543 333345577777776653
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3e-08 Score=96.02 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=165.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCC--CeEEE--EEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEE
Q 006126 374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 441 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~--~~~~~--~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iw 441 (660)
.+....+-++|+ ++.|.++. + |.|..|.++. |+... .......+-+.++++++| .++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 466778889999 66777776 3 6777777654 54432 222233333789999999 666665 45689999
Q ss_pred eCCC-CceeeE--eeccCCC----------eEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 442 CPCT-KKTKAK--LKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 442 d~~~-~~~~~~--~~~~~~~----------v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
-++. |..... ...|.+. +....+.|++++|++.+. -..|.+|++..|......... +..|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC-----
Confidence 8865 433221 2225444 888999999999988764 357999999987654444433 3333
Q ss_pred CCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCC-ce---eeee---cCC-CCCCCeEEEEEccCCCEEEEEec-CCeEEE
Q 006126 508 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NH---TSQL---VPD-KMDLPITYATYSCDGKCIYVSCK-SGHVKV 576 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~-~~---~~~~---~~~-~~~~~v~~~~~s~dg~~l~sg~~-dg~I~i 576 (660)
...+.|.|+|++++..+ + -+++|.+|..... .. ++++ ... ........+.+++||++|+++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56789999999999988 5 7899999998763 22 2221 111 01455677889999999998765 357888
Q ss_pred EECCC--CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCcee
Q 006126 577 FDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESEVE 638 (660)
Q Consensus 577 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~~~~~~ 638 (660)
|.+.. +++. ...... ........+.++| ++++|+.++.| ..|.+|......++
T Consensus 271 f~V~~~~g~L~-~~~~~~-------teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 271 FSVDPDGGKLE-LVGITP-------TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEEcCCCCEEE-EEEEec-------cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCce
Confidence 87764 3322 222110 1223344789999 78998888865 47899887665543
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=1.1e-08 Score=107.55 Aligned_cols=296 Identities=10% Similarity=0.052 Sum_probs=180.8
Q ss_pred CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecc
Q 006126 273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 352 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~ 352 (660)
.+..+++++.+|.+.-+|..++ ...-+..+.. .+.. ....++..++.++.+|.+..+|..+++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG---~~~W~~~~~~-----~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~------- 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETG---KRLWRVDLDE-----RLSG-GVGADGGLVFVGTEKGEVIALDAEDGKE------- 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCC---cEeeeecCCC-----Cccc-ceEEcCCEEEEEcCCCEEEEEECCCCcE-------
Confidence 3668888888899999997642 2222333322 1111 1122567788888899999998877764
Q ss_pred ceeEEEecCCCCceeeecccCCCCCCeEE-EEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE-----EEEEcC
Q 006126 353 NMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-----YFILLP 425 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~-----~v~~sp 425 (660)
+|....+ ..+.+ ....++.++.+. +|.+..||..+|+.+..+......+. +... .
T Consensus 128 -----~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~ 189 (377)
T TIGR03300 128 -----LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-A 189 (377)
T ss_pred -----eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-E
Confidence 5653321 11111 112355666666 89999999999998887764332211 1111 1
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeEeeccC-C------CeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 426 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-N------RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 426 ~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~------~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
++.++.+..++.+..+|+++|+.+....... . ....+.-+| .+..+++++.+|.++.||..+++.......
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 2367788889999999999998765432110 0 000010111 345788888899999999999764432221
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
. ....... ++..+++ +.+|.++.+|..+++.+-...... .....+... .+..+++++.+|.|+
T Consensus 270 ~-----------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 270 S-----------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred C-----------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCEEE
Confidence 1 1112222 3445555 688999999999998765542211 112222222 467899999999999
Q ss_pred EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
++|..+|+.+..+..+ ...+.. ...+. + +.|..++.||.|+.|
T Consensus 334 ~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 334 WLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence 9999999999887743 111221 22222 3 458888899999876
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.28 E-value=2.1e-09 Score=114.82 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=142.0
Q ss_pred cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEeccCCceeeeeeccceeEEEecC
Q 006126 285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQP 361 (660)
Q Consensus 285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 361 (660)
.|.++|..+ .....+. . +...+...+|+|||++|+.++.+ ..|.+|++.++..
T Consensus 171 ~l~~~d~~g----~~~~~l~--~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------- 226 (417)
T TIGR02800 171 ELQVADYDG----ANPQTIT--R--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------- 226 (417)
T ss_pred eEEEEcCCC----CCCEEee--c--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------
Confidence 467777653 2233321 1 46679999999999999988754 3677776655432
Q ss_pred CCCceeeecccCCCCCCeEEEEEe--CCEEEEE-e-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC
Q 006126 362 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 434 (660)
Q Consensus 362 ~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~ 434 (660)
.... .+...+.+++|+ ++.|+.. + ++ .|.+||+.++... .+..+........|+||| .|+..+.
T Consensus 227 -----~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 227 -----EKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred -----EEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 1111 244456678888 6666544 3 43 6999999877543 333444445567899999 7766554
Q ss_pred C-C--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126 435 D-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETT 508 (660)
Q Consensus 435 d-~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 508 (660)
. + .|+++|+.+++. ..+..+...+..+.|+|+|++++.++.++ .|.+||+.++.. ..+ ... .
T Consensus 298 ~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l---~~~-----~ 365 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVL---TDT-----G 365 (417)
T ss_pred CCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEc---cCC-----C
Confidence 3 3 688889887664 34444556677889999999999888776 789999887432 111 111 1
Q ss_pred CeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126 509 IVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATY 558 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 558 (660)
......|+|||+.|+. +.+ ..+++.+. ++.....+... .+.+..++|
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~--~g~~~~~~w 416 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG--NGDVREPAW 416 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC--CCCcCCCCC
Confidence 2345689999999887 433 24666665 45554544331 334444444
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.3e-09 Score=115.34 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=136.0
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e--EE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~--l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
.|.+.|...+.. +.+......+.+-.|+||| . ++ +...++ .|++.++.+++... +....+......|+|||+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 566777664433 3454455556778999998 4 32 333333 68888998776433 333444556789999999
Q ss_pred EEEEEeC-CC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCc--EEEEeCCC-Cc
Q 006126 470 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 539 (660)
Q Consensus 470 ~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~--i~iwd~~~-~~ 539 (660)
.|+..+. +| .+..|++..+.. ..... +..+.. +.....+|+|||+.|+. + .++. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9887653 22 344477665311 01111 222221 23457899999998887 4 4454 55555542 23
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
....+.. +...+....|||||++|+..+.+ ..|++||+.+++...... + ...+. ...|+| ||+
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~--~~~~~--~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------S--PENKE--SPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------C--CCCcc--ceEECC-CCC
Confidence 3333432 24566788999999998876543 469999999987654321 1 11223 789999 888
Q ss_pred EEEEEeC---CCeEEEEeCCCCce
Q 006126 617 RIALGLT---NGRVHVIEPLESEV 637 (660)
Q Consensus 617 ~l~s~s~---Dg~v~iw~~~~~~~ 637 (660)
+|+..+. .+.|++|++..++.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCE
Confidence 8775443 35688899987765
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=1.1e-10 Score=110.82 Aligned_cols=254 Identities=15% Similarity=0.217 Sum_probs=169.5
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 431 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~sp~~---~l~s 431 (660)
...-+.++.|. |++|++|. +|.|.++.-.... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568899999 99999999 8999998654322 334454443 356788999887 7888
Q ss_pred EeCCCeEEEEeCCCCce-----------------------------------eeEe-eccCCCeEEEEEeCCCCEEEEEe
Q 006126 432 GFDDSSILVHCPCTKKT-----------------------------------KAKL-KGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 432 ~~~d~~I~iwd~~~~~~-----------------------------------~~~~-~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
.+.|.+|++|-+..... .+.+ .+|.-.|+++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 89999999998753211 1111 2477789999999999888875
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeee----eccCCCCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceee----eec
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQ----TGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTS----QLV 545 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~----~~~ 545 (660)
.|-.|.+|++.-... ...+-.+. +.-. .-|++..|+|..-.+.+ ++.|+|++.|++...+.. .+.
T Consensus 183 DdLRINLWnlei~d~--sFnIVDIKP~nmEeLt---eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQ--SFNIVDIKPANMEELT---EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred cceeeeeccccccCC--ceeEEEccccCHHHHH---HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 478999998864211 11111011 1111 35788899996544333 588999999998432211 111
Q ss_pred CCC----------CCCCeEEEEEccCCCEEEEEecCCeEEEEEC-CCCeeEEEeecccccCCC----CcCcccc-eEEEE
Q 006126 546 PDK----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIA 609 (660)
Q Consensus 546 ~~~----------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~-~~~~~~~~~~~~~~~~~g----h~~~~v~-~~~v~ 609 (660)
... --..|..+.|+++|+++++-.. -+|++||+ ...+++..++.|.+.... -+.+.++ -..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 100 0346788999999999998532 68999999 456667777655332110 0111121 23688
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 610 AHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
|+. ++.+++||+....+++++...|.
T Consensus 337 ~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcC-CcceEecccccceEEEecCCCCc
Confidence 998 78899999999999999976654
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=1.7e-08 Score=101.66 Aligned_cols=273 Identities=13% Similarity=0.068 Sum_probs=161.9
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEEeccCCceeeeeeccc
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
++|.+.|..+ .++... ++. ......+ +||||+.|+.+.. +..|.+||..+.+....
T Consensus 27 ~~v~ViD~~~----~~v~g~-i~~---G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~----- 92 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGM-TDG---GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD----- 92 (352)
T ss_pred ceEEEEECCC----CEEEEE-EEc---cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----
Confidence 7899999874 333321 211 1122234 9999998887766 57888887776654211
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCe
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQDL 428 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~ 428 (660)
...+.--. + ........++++ |++|+... +..|.+.|+.+++.+.++.-... ..-...++++.
T Consensus 93 -------i~~p~~p~--~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~ 160 (352)
T TIGR02658 93 -------IELPEGPR--F--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTF 160 (352)
T ss_pred -------EccCCCch--h--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCcc
Confidence 11000000 0 011223356677 78888766 58999999999999988864321 11122222221
Q ss_pred EEEEeCCCeEEEEeCC-CCcee----eEeeccCCCeE-EEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 429 FAFGFDDSSILVHCPC-TKKTK----AKLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 429 l~s~~~d~~I~iwd~~-~~~~~----~~~~~~~~~v~-~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
. +-+.||......+. +|+.. ..+.+...++. .-.|.+ +|+++..... |+|.+.|+..........+..+..
T Consensus 161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence 1 22234433332221 12211 11111001110 003455 8877776665 999999976543332333331111
Q ss_pred -----ccCCCCCCeEEEEEecCCcEEEE-Ee--c--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-E
Q 006126 502 -----GLVPETTIVNHIQFHPDQIHLLS-IH--E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-C 564 (660)
Q Consensus 502 -----~~~~~~~~v~~~~~sp~~~~l~~-~~--d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~ 564 (660)
+-.+ +...-++++|+++.+++ .. . +.|.++|..+++.+..+.. ...+..++++|||+ +
T Consensus 239 ~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 239 AEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPL 313 (352)
T ss_pred cccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeE
Confidence 1122 45556999999999887 31 2 4799999999999999875 56899999999999 8
Q ss_pred EEEEe-cCCeEEEEECCCCeeEEEee
Q 006126 565 IYVSC-KSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 565 l~sg~-~dg~I~iwd~~~~~~~~~~~ 589 (660)
|++.. .++.|.++|..+++.+..+.
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeeec
Confidence 87666 47889999999999998873
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2e-09 Score=115.13 Aligned_cols=193 Identities=12% Similarity=0.082 Sum_probs=129.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-d---g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~ 443 (660)
.+...+....|+ |+.|+..+ + ..|.+||+.+++... +......+....|+||| .|+ +.+.++ .|++||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366778899999 88887776 3 369999999886543 33333445578999999 665 454454 6899999
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
.+++.. .+..+........|+|||+.++..+. +| .|+++|+.+++.. .+. ..+ .......|+|||+
T Consensus 275 ~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt--~~~-----~~~~~~~~Spdg~ 343 (430)
T PRK00178 275 ASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT--FVG-----NYNARPRLSADGK 343 (430)
T ss_pred CCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee--cCC-----CCccceEECCCCC
Confidence 887643 45555556667889999998877664 33 5777888775421 111 111 1234578999999
Q ss_pred EEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126 521 HLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 582 (660)
Q Consensus 521 ~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~ 582 (660)
+++. +. ++ .|.+||+.+++. ..+... .......|+|||++++..+.+ ..|+++++..+
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9987 32 33 588999988765 333321 122356899999999877654 35777787543
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.6e-10 Score=115.33 Aligned_cols=296 Identities=12% Similarity=0.133 Sum_probs=188.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
.....|++|+....|+|+||.||.++|-.+.+......... +-.+. .+......+||...|.-+.|+ ...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g------laa~s--nLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG------LAAAS--NLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc------ccccc--ccchhhhhccCcceEEEEEecccccc
Confidence 56789999999999999999999999998876543211000 00000 111111234899999999999 556
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee-eEeeccCCCeEEEE
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA 463 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~~v~~l~ 463 (660)
|-+.. +|.|.+|-+-.|.....+. ...+.|.+++|+.|| .+.....||.|.+=.++..+.- +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 66666 8999999998876554433 334568899999999 9999999998887776643221 22332 2234678
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeee--cee-eeeeeeccCCCCCCeEEEEEe--------cCCcEEEEE-ecCcEE
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLC--SKF-LHSFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEGQID 531 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~-~~~~~~~~~~~~~~v~~~~~s--------p~~~~l~~~-~d~~i~ 531 (660)
|++|.+.++.+-.+|.+.++|....-..+ ..+ +. ...+.+.....|..+.|. ||...++++ .+|.+.
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn-~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN-GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe-eeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 99999999888899999999986521110 001 11 111111001235555553 477788887 667777
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126 532 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLE 602 (660)
Q Consensus 532 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 602 (660)
+..-.+......+. ....+..+.|+++|.+|+.++.+ +.|.+|.. -|+.+..+..+ +..
T Consensus 243 iMR~eND~~Pvv~d---tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp--------g~~ 310 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVD---TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP--------GSC 310 (1189)
T ss_pred hhhhcCCCCCeEEe---cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------Cce
Confidence 77654433322332 25678899999999999998865 24555543 35555555532 223
Q ss_pred cceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 603 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 603 v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+++++|-. .|-.+|.+ -|+.|++=++.
T Consensus 311 --It~lsWEg-~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 311 --ITGLSWEG-TGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred --eeeeEEcC-CceEEEEE-ecceEEEEeec
Confidence 34788876 46556555 35566554443
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.3e-09 Score=101.69 Aligned_cols=270 Identities=14% Similarity=0.075 Sum_probs=163.8
Q ss_pred CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEE
Q 006126 283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 358 (660)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp---dg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 358 (660)
-|.+.++++...+... ...+.- . .++.+..+.|.. +|. .++-+-.+|.|.++........ ..
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~--~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQC--T-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VH 110 (339)
T ss_pred ccceEEEeecccccCc-cceeee--e-cccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------ee
Confidence 3667788877543333 111111 1 356677777763 444 4555666788888765433220 11
Q ss_pred ecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCC--eEEE
Q 006126 359 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD--LFAF 431 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp~~--~l~s 431 (660)
..+-+...+. .....++.|+ +..++++. +|.+.+-+....... ++++.|...++.+.|+... .+.+
T Consensus 111 L~~ls~~ki~-------~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 111 LRGLSSKKIS-------VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ecccchhhhh-------heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 1111111100 0123456666 66666666 788886665554443 4788999999999998776 8999
Q ss_pred EeCCCeEEEEeCC-CCceeeE-eeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126 432 GFDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 508 (660)
Q Consensus 432 ~~~d~~I~iwd~~-~~~~~~~-~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 508 (660)
|++|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++- .+++.....+ +
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----G 254 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----G 254 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----c
Confidence 9999999999998 3444433 445888999998877 6789999999999999999962 2333311111 6
Q ss_pred CeEEEEEecCCc--EEEEEecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEE-EEECCC
Q 006126 509 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTST 581 (660)
Q Consensus 509 ~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~-iwd~~~ 581 (660)
.|..+.++|.-. .++++.-+..+|.+...+..- .......|..-++...|.....++++++ .|..++ +|-.-+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 899999999533 344455555667766543322 1111112455556666644445677754 355544 665444
Q ss_pred C
Q 006126 582 L 582 (660)
Q Consensus 582 ~ 582 (660)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 4
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=6.8e-10 Score=113.23 Aligned_cols=197 Identities=15% Similarity=0.072 Sum_probs=149.5
Q ss_pred ecCCCEEEEEECCCcEEEEeccCCceeee-----eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----C-CE
Q 006126 320 SHSGDFLVALTQTATHKLWKWQSNKQSLE-----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----G-SH 388 (660)
Q Consensus 320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~-~~ 388 (660)
.|.+.|+|....||.+++|+...++.... ..+.......|...-+ .......+..+. + ..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence 35567999999999999999988876443 2222233344441100 011111222221 2 34
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
++-|. .|.|.+|++..|+....+. .|.+.|.++.++.+- .|.+++.|+.+..|+...++.+..+...+..+.+++.
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 56666 7999999999999988876 788999999998888 9999999999999999999999999998899999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-----CcEEEEE--ecCcEEEEeCC
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAP 536 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~--~d~~i~iwd~~ 536 (660)
+|||..+++++ +.|++||+++.+ .+. .+.||. +.|+++.|--+ |.+++++ .+..+.+|-+.
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~ke-----vv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKE-----VVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCce-----EEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999999876 689999999943 333 678898 79999999887 8888884 55667777654
No 263
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=1.9e-10 Score=124.29 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=147.5
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe----EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v----~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
...++.+. ++.+.+||...+.....+....... .-+.++++. ++++|+.-+.|.+|+......-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 56677777 8999999998887777665443322 123345666 99999999999999987333333588999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 538 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~ 538 (660)
..+.|+-||+++++.|+|.++++|++.+.+... -.--+|. +.|..++|+|+ .+++ +.|.+.++|+. ++
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 999999999999999999999999999965332 1344677 79999999998 6666 79999999977 56
Q ss_pred ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 539 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
..+.++..+ ....+..++..++...+++++.||.+++|++..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 666677653 378899999999999999999999999999764
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=3.1e-09 Score=101.31 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=152.2
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
..-|-..-+++.+.|.++|||--.+ .++.-.- + .+....++.++.+.++...|+.|-.+|++.-+.+...-.
T Consensus 31 ~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wps-I-~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn--- 102 (404)
T KOG1409|consen 31 ILIPKEEGVISVSEDRTVRVWLKRD---SGQYWPS-I-YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN--- 102 (404)
T ss_pred eeccCCCCeEEccccceeeeEEecc---ccccCch-h-hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh---
Confidence 4455666788999999999997653 2222110 0 011467899999999999999999999987665432211
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 425 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp 425 (660)
.-...+... .|...|..+-|+ ..++++++ |..+.---.+.+..+..+.- .+.+-.+
T Consensus 103 --------------km~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~ 161 (404)
T KOG1409|consen 103 --------------KMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASAL 161 (404)
T ss_pred --------------hcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCC
Confidence 111122122 699999999999 77888888 66554333344333221110 0000000
Q ss_pred CC---eEEEEeCCCeEEEEe--CCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 426 QD---LFAFGFDDSSILVHC--PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 426 ~~---~l~s~~~d~~I~iwd--~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
+- ....|...|.|..-. ...-..+.++.+|.+.+.++.|.|....|.+|..|..+.+||+-..+.+ .-..
T Consensus 162 ~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-----~~el 236 (404)
T KOG1409|consen 162 QFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-----AYEL 236 (404)
T ss_pred ceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-----eeee
Confidence 00 233444444444333 3344678889999999999999999999999999999999999764321 1134
Q ss_pred eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 538 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~ 538 (660)
.+|. ..|..+...+--+.+.+ +.||.|.+||++..
T Consensus 237 ~gh~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 QGHN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccch---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 5666 57888887777777777 69999999998643
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=6.5e-09 Score=110.09 Aligned_cols=217 Identities=14% Similarity=0.085 Sum_probs=129.7
Q ss_pred CCCeEEEEEecCCCE--EE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 311 GGRVVRLIYSHSGDF--LV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 311 ~~~V~~~~~spdg~~--l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
...+..-+|||||+. ++ +...+|.-.|| +.+..++...+.. ...+.....+|+
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~-------------------~~~l~~g~~~~lt---~~~g~~~~p~wSPD 241 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIF-------------------LGSLENPAGKKIL---ALQGNQLMPTFSPR 241 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEE-------------------EEECCCCCceEee---cCCCCccceEECCC
Confidence 455677899999975 32 33334443333 2233333222211 133344567888
Q ss_pred CCEEEEEe--CC----cEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe--EEEEeCCC-CceeeE
Q 006126 386 GSHLFSAS--GG----KISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~--dg----~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~--I~iwd~~~-~~~~~~ 451 (660)
|+.|+..+ +| .+..|++..+ +..+............+|+||| .|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 77887665 23 3444777653 3333333333344678999999 666555 4564 55555542 233444
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E--
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-- 525 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-- 525 (660)
+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.. . +..+ . ..+....|+|||+.|+. +
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~-~---~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTS-P---ENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCC-C---CCccceEECCCCCEEEEEECC
Confidence 55455667788999999998877653 36999999886531 1 1111 1 24667899999999886 3
Q ss_pred -ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC
Q 006126 526 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 562 (660)
Q Consensus 526 -~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg 562 (660)
....|+++|+..++....... .+.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence 235799999987765444322 4556678888754
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=3.5e-09 Score=108.15 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=137.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe------c--------------CCCEEEEEE
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 330 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s------p--------------dg~~l~s~s 330 (660)
.|-+.++|....||.++||+... .+.++---|...-++.-.+..|. | |...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~----~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAK----NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccC----ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 35567899999999999999985 33322111110012333333332 1 111233333
Q ss_pred CCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeE
Q 006126 331 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 407 (660)
Q Consensus 331 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~ 407 (660)
..|.| .+|+...|.+......++|.+.|.++.++ -..|.+++ |+.+..|+...+..
T Consensus 78 ~~g~v---------------------~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSV---------------------LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccE---------------------EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 34444 45555555554444445799999999998 56788888 99999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC-----CCEEEEE-eCCCcE
Q 006126 408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVSS-GADAQL 480 (660)
Q Consensus 408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s~-s~dg~i 480 (660)
++.+......+.+++.+||| .+++++ +.|++||+++++.+.+|.||.++|+++.|..+ |.+++++ ..+..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999999999999999999 888775 67999999999999999999999999999776 6666654 345667
Q ss_pred EEEEcCC
Q 006126 481 CVWDAVG 487 (660)
Q Consensus 481 ~vwd~~~ 487 (660)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7886655
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=7.1e-08 Score=97.25 Aligned_cols=227 Identities=12% Similarity=0.016 Sum_probs=141.7
Q ss_pred CCcEEEEECCCCeEEEEEcCCCC-------CeEEEEEcCCC-eEEEEe-C-CCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 394 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~-------~v~~v~~sp~~-~l~s~~-~-d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
++.|.+||..+++.+..+..... .-..++++||| ++++.. . +..|.+.|+.+++.+..+.-. +...-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEE
Confidence 47899999999999988874322 22478999999 666555 3 789999999999988877642 2222222
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCCC----
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPT---- 537 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~d~~i~iwd~~~---- 537 (660)
.+++. ++ +-+.||......+.+.......... ++.+ +.+ -...-.|.+ +|+++.++..|.|.+.|+..
T Consensus 155 t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~~~---v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 155 TANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTE-VFHPEDEY---LINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ecCCc-cE-EEeecCceEEEEecCCCceEEeeee-eecCCccc---cccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 22222 22 2234555444333321111111111 1111 100 000114566 89999988779999999643
Q ss_pred -CceeeeecCCC-----CCCCeEEEEEccCCCEEEEEe----------cCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126 538 -LNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC----------KSGHVKVFDTSTLELRCQINLTAYAQPGTISL 601 (660)
Q Consensus 538 -~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 601 (660)
......+.... ....+.-++++|+++.++... ..+.|.++|..+++.+..+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~ 299 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GH 299 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CC
Confidence 33333322110 123334499999999888743 125799999999999998874 33
Q ss_pred ccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCceec
Q 006126 602 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEW 639 (660)
Q Consensus 602 ~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~~~w 639 (660)
..+ .++++| |++ +|.+.. .++.|.+.|..+++..-
T Consensus 300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 344 899999 788 766555 67899999999987643
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.20 E-value=9.4e-08 Score=94.96 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=103.1
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe-cCcEEE
Q 006126 455 HQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-EGQIDV 532 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-d~~i~i 532 (660)
|.+.|.-..+.-+++-++.|..|| .+-++|.++++... ..+.- +.|.++..+|+|++++++. ...+.+
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-------~e~~l---g~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-------IEKDL---GNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-------eeCCc---cceEEEEEcCCCcEEEEEcCceEEEE
Confidence 455566666666777788899998 89999999965322 11222 5799999999999999974 468999
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC----eEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
.|+.++.....-. ...+-|+.+.|+|+++++|-+--+| .|++||+.+++....-.+. + +-.+-
T Consensus 428 ididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t-----a------~DfsP 494 (668)
T COG4946 428 IDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT-----A------YDFSP 494 (668)
T ss_pred EEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc-----c------cccCc
Confidence 9999988633222 2367899999999999999877665 6899999998876654432 1 12256
Q ss_pred EEecCCCCEEEE
Q 006126 609 AAHPLEPNRIAL 620 (660)
Q Consensus 609 ~~sp~d~~~l~s 620 (660)
+|.| |+++|--
T Consensus 495 aFD~-d~ryLYf 505 (668)
T COG4946 495 AFDP-DGRYLYF 505 (668)
T ss_pred ccCC-CCcEEEE
Confidence 7777 6776543
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=2.2e-08 Score=114.49 Aligned_cols=339 Identities=13% Similarity=0.082 Sum_probs=189.8
Q ss_pred CceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 264 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 264 ~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
....+.+.+|...++.+..+|.|.+...........+...-. -..+|.+++||||++.|+..+.++++.+.+.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~--- 149 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALVTGEGNLLLMTR--- 149 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEEeCCCEEEEEec---
Confidence 334458889999999999999999982221111222222111 3679999999999999999999999887542
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcE--E-EEECCCC-eEEEEEcCCCCCe
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKI--S-IFSLETF-QTLATFANPPPIA 418 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I--~-iwd~~~~-~~~~~~~~~~~~v 418 (660)
-|++-....+..... +. ..--.|.|- ...=+-|+.|.- + .=|..-. .....+. ....-
T Consensus 150 --------------~fd~i~E~~l~~~~~-~~-~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 150 --------------DFDPISEVPLDSDDF-GE-SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGR 212 (928)
T ss_pred --------------cceEEEEeecCcccc-CC-CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCc
Confidence 222211111110000 01 111122222 111111110100 0 0000000 0001122 33445
Q ss_pred EEEEEcCCC-eEEEEeC---C---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCC
Q 006126 419 TYFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGW 488 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~---d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~ 488 (660)
..++|..|| +||+.+. . +.++||+-+ |....+-+.-.+--.+++|-|.|+++++... ...|.+|.-+ |
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G 290 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G 290 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C
Confidence 589999999 8887764 2 479999954 7655555544444567899999999988764 3456666543 3
Q ss_pred eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCC-CEE
Q 006126 489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDG-KCI 565 (660)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg-~~l 565 (660)
-....+.+. ..... ..|..+.|++|+..|++.....|.+|-..+..- .+.+... ....+..+.|+|.. ..|
T Consensus 291 LrhgeF~l~--~~~~~---~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 291 LRHGEFTLR--FDPEE---EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRL 364 (928)
T ss_pred cEeeeEecC--CCCCC---ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEE
Confidence 322233333 11222 579999999999999996555599999877542 2333322 13445559999854 456
Q ss_pred EEEecCCeEEEEE----CCCCe--------eEEEeecc---------cccCC-C-C--cCcccceEEEEEecCCCCEEEE
Q 006126 566 YVSCKSGHVKVFD----TSTLE--------LRCQINLT---------AYAQP-G-T--ISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 566 ~sg~~dg~I~iwd----~~~~~--------~~~~~~~~---------~~~~~-g-h--~~~~v~~~~v~~sp~d~~~l~s 620 (660)
...+.+|.+..++ +..+. .+.++... ..+|+ - + -.-+-.+.+++|++ ++..+|+
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~-~~~~~av 443 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP-SNSRFAV 443 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC-CCCeEEE
Confidence 6666656665443 22221 12222110 00000 0 0 00112255999999 6777999
Q ss_pred EeCCCeEEEEeCCCC
Q 006126 621 GLTNGRVHVIEPLES 635 (660)
Q Consensus 621 ~s~Dg~v~iw~~~~~ 635 (660)
-..||+|.+|.....
T Consensus 444 l~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLK 458 (928)
T ss_pred EECCCCEEEEEecCC
Confidence 999999999997654
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=6.7e-09 Score=97.07 Aligned_cols=245 Identities=14% Similarity=0.054 Sum_probs=158.0
Q ss_pred CCCeEEEEEe-----CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCC------CCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 006126 376 KDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDDSSILVH 441 (660)
Q Consensus 376 ~~~v~~v~~s-----~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~sp~~-~l~s~~~d~~I~iw 441 (660)
...+..+.|. |. .++-+. +|.|.++..........+.+-. ....++.|++.+ .++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 3456666776 34 344444 7889888776444333333221 124578899999 99999999999866
Q ss_pred eCCCCcee--eEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-
Q 006126 442 CPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP- 517 (660)
Q Consensus 442 d~~~~~~~--~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 517 (660)
+....... +.++.|.-..+...|+. +.+.+.+|+.|+.+..||++... ....+ ...-|. ..|.++.-+|
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i~~-n~kvH~---~GV~SI~ss~~ 221 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFIWH-NSKVHT---SGVVSIYSSPP 221 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ceeee-cceeee---cceEEEecCCC
Confidence 65554433 47889999999999976 44688999999999999999422 12222 233455 6788988886
Q ss_pred CCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCeeEEEeeccccc
Q 006126 518 DQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYA 594 (660)
Q Consensus 518 ~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~ 594 (660)
.+.++++| .|..|++||.++ ++++..-.. .+.|+.+.++|.-. .++.++.-+-.+|-+...+....... ...
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~--~~s 296 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV--LPS 296 (339)
T ss_pred CCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee--eec
Confidence 57788885 999999999984 666655433 68899999998543 33333343446777766553331111 111
Q ss_pred CCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEE-EEeCCCCc
Q 006126 595 QPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESE 636 (660)
Q Consensus 595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~-iw~~~~~~ 636 (660)
..+| ..-.+ .-.|.. ...+||||+ .|..++ +|-..+++
T Consensus 297 ~~~h-dSl~Y--G~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 297 DKIH-DSLCY--GGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cccc-cceee--cccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 1133 22233 556655 245788876 677755 88776654
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=4.4e-08 Score=98.30 Aligned_cols=281 Identities=12% Similarity=0.068 Sum_probs=177.4
Q ss_pred eecCCCCceeeEecCCCCEEEEEeCCC---------------cEEEEeccCcCCCcceeeeecCCCCCCCCeE-EEEEec
Q 006126 258 CFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSH 321 (660)
Q Consensus 258 ~~~~~~~~~~~~~spdg~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~-~~~~sp 321 (660)
.-..|.+.....|||.+++|.+=+..+ .+.+||... +.+. ..++......-.| -+.|+-
T Consensus 67 ~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----g~iv-~sf~~~~q~~~~Wp~~k~s~ 141 (561)
T COG5354 67 VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----GMIV-FSFNGISQPYLGWPVLKFSI 141 (561)
T ss_pred eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC----ceeE-eeccccCCcccccceeeeee
Confidence 444555566679999999999976543 489999974 3332 2233321222266 788999
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEE-----
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA----- 392 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~----- 392 (660)
+.+|+|-. ....+.|+++ +... ...-+..-....+....|+ +..|+.-
T Consensus 142 ~D~y~ARv-v~~sl~i~e~-t~n~---------------------~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 142 DDKYVARV-VGSSLYIHEI-TDNI---------------------EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred cchhhhhh-ccCeEEEEec-CCcc---------------------ccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 88887655 3346777765 2211 1100000112446666666 2233332
Q ss_pred e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE----e-------CCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 393 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 393 ~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~----~-------~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
+ .+.+++|.+..+..+.+-.-....-..+.|.+.| .+++- . ....++++++.. ..+.....-.++|
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pV 277 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPV 277 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccc
Confidence 2 5789999998776665543223333468899988 33211 1 124678888873 3344433568899
Q ss_pred EEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee---cCcEEEE
Q 006126 460 TCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVY 533 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~---d~~i~iw 533 (660)
..++|.|.++.+++. ..+..+.++|++.. .....+. ..-+.+.|+|.+++++. |. .|.+-+|
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc------eEEecCC------cccccccccCcccEEEEecCCccccceEEe
Confidence 999999988876654 46889999999982 1111222 24557899999999998 53 4789999
Q ss_pred eCCCCceee-eecCCCCCCCeEEEEEccCCCEEEEEe------cCCeEEEEECCCCe
Q 006126 534 EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC------KSGHVKVFDTSTLE 583 (660)
Q Consensus 534 d~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~------~dg~I~iwd~~~~~ 583 (660)
|......+. .+. .....-+.|+|||+++.+.. .|..|.|||+....
T Consensus 346 ~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 346 DPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 987554443 442 33455578999999988764 36889999987543
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=128.42 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=142.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.-+|-..+.++|+.||.+++|.... ...+..+.- .| ...|..+.|+.+|+.+..+..||.+.+|.......
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt--~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~-- 2285 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRT--AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY-- 2285 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccC---CCeEEEeec--cC-cchhhhhhhcccCCceeeeccCCceeecccCCcce--
Confidence 35567788999999999999999974 333443332 22 48999999999999999999999999998753221
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe----CCcEEEEECCCCe-EEEEEcCCCCCeEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLETFQ-TLATFANPPPIATYFI 422 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~----dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~ 422 (660)
.-|. .|......+.|-+..+++++ ++.+.+||..-.. .-..-..|..++++++
T Consensus 2286 ---------~s~q-------------chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2286 ---------TSWQ-------------CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred ---------eccc-------------cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 1122 58888888888887777776 3789999964321 1111268999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
+-|.. .|++|+.+|.|++||++..+.++.+.. ++ ...++++|+..|.++||++....
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 99999 999999999999999998888877764 44 56789999999999999998843
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=5e-10 Score=126.54 Aligned_cols=174 Identities=14% Similarity=0.225 Sum_probs=128.4
Q ss_pred CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 394 GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
||.|++|....+..+..++ ..+..|+.+.|+.+| .+..+..||.+.+|.+. .+.....+.|....+.+.|-. ..+
T Consensus 2229 dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~ 2305 (2439)
T KOG1064|consen 2229 DGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLL 2305 (2439)
T ss_pred CceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhh
Confidence 3444444433333333333 223677888999999 99999999999999977 556667777888888888864 556
Q ss_pred EEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126 472 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 472 ~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 547 (660)
++++ .++.+.+||..-... ... +...|. +.++++++-|..+.+++ |.+|.|++||++..+.+++++.
T Consensus 2306 ~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~- 2376 (2439)
T KOG1064|consen 2306 ATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA- 2376 (2439)
T ss_pred hccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-
Confidence 6544 467899999765321 112 235676 78999999999999999 5999999999998887776632
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
+. ...++++|+..|.|+||++....++..++.
T Consensus 2377 ----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 44 567999999999999999998877777653
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.1e-07 Score=110.83 Aligned_cols=255 Identities=11% Similarity=0.033 Sum_probs=158.1
Q ss_pred EEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcC-C-------------CCCeEEEEEcCCC-eEEEE-eCCCeEE
Q 006126 380 SCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFAN-P-------------PPIATYFILLPQD-LFAFG-FDDSSIL 439 (660)
Q Consensus 380 ~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~-~-------------~~~v~~v~~sp~~-~l~s~-~~d~~I~ 439 (660)
..++++ +. .+++-. ++.|.+||.. +..+..+.+ . -..-..+++.+++ .|+++ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 456776 44 444444 6899999986 444444432 1 1124678999887 55444 4567899
Q ss_pred EEeCCCCceeeEeecc-----------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee--eeee
Q 006126 440 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF 499 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~-----------------~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~ 499 (660)
++|+.++. +.++.+. -.....++++| ++..+++.+.++.|++||..++....... ....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987764 3333210 11346789999 56667777788999999998754311000 0000
Q ss_pred eeccCC---CCCCeEEEEEecCCcEEEE--EecCcEEEEeCCCCceeeeecC-----------CC--------CCCCeEE
Q 006126 500 QTGLVP---ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY 555 (660)
Q Consensus 500 ~~~~~~---~~~~v~~~~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~-----------~~--------~~~~v~~ 555 (660)
..++.. .-.....++++|++..|++ +.++.|++||+.++.......+ .. .-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 001000 0024567999999986665 3678999999987653211100 00 0113458
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc-ccCCCC--cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-YAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
++++++|+.+++-+.++.|++||..++.......... ....|. ...--.+..++++| +|+++++.+.+++|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 9999999988888889999999999887654432100 000010 00011245899999 8999999999999999999
Q ss_pred CCCce
Q 006126 633 LESEV 637 (660)
Q Consensus 633 ~~~~~ 637 (660)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88753
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=4.8e-09 Score=100.05 Aligned_cols=239 Identities=13% Similarity=0.139 Sum_probs=166.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEC-CCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC---
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSL-ETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--- 444 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~-~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~--- 444 (660)
||.+.|+....- ..-+++.+ |.++++|-- +.++.-..+. .-+.+++++.+.+.. .|++|-..|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 777777766655 66788888 899999954 3455444443 345678899999999 99999999999888654
Q ss_pred -CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 445 -TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 445 -~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
.....+.+..|..++..+.|+-...++++.+.|..+.---.+.+.......+. ...+++.+.-. +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE----------TPASALQFDAL--YAF 169 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee----------ccCCCCceeeE--EEE
Confidence 33445666779999999999988899999999988865555665443332222 11111222211 233
Q ss_pred EE-ecCcEEEEeC--CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 524 SI-HEGQIDVYEA--PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 524 ~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
.| ..|.|....+ ..-.++.++.+ |...+++++|.|....+.+|..|..|.+||+.-.+-+.-.. .|| .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el------~gh-~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL------QGH-N 240 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee------ccc-h
Confidence 34 4455544443 34455566654 79999999999999999999999999999997654333221 255 4
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+.+. .+.+-+ .-..+.+++.||.|.+|+.+...
T Consensus 241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhh--hhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 4455 565555 56789999999999999997654
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=5e-08 Score=101.26 Aligned_cols=273 Identities=10% Similarity=0.072 Sum_probs=181.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceee----------eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT----------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 337 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~v 337 (660)
+.|.....++|+|+.||.+++-.+.+......... .+| .||...|.-+.|+.+.+.|-+...+|.|.|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL--eGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL--EGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh--ccCcceEEEEEeccccccccccCCCceEEE
Confidence 58999999999999999999998875332222111 123 459999999999999999999999999999
Q ss_pred EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE-EEEcC
Q 006126 338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFAN 413 (660)
Q Consensus 338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~-~~~~~ 413 (660)
|-+-.+.- - ........++.|.+++|. |..++... ||.|.+=.++..+.. +.+++
T Consensus 98 WmlykgsW--------------~-------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg 156 (1189)
T KOG2041|consen 98 WMLYKGSW--------------C-------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG 156 (1189)
T ss_pred EeeecccH--------------H-------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch
Confidence 97654431 0 000111356678899999 88888888 888887776543221 11221
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-------ceeeE----eeccCCCeEEEEEe--------CCCCEEEE
Q 006126 414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKAK----LKGHQNRITCLAYS--------LSLNVLVS 473 (660)
Q Consensus 414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-------~~~~~----~~~~~~~v~~l~~s--------p~~~~l~s 473 (660)
.....+.|++|. .++.+-.+|.+.+||.... .+... +......|-.+.|. |+...|++
T Consensus 157 --~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 157 --QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred --heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 123468899999 8888888999999997632 11111 11122345566663 47778999
Q ss_pred EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---------CcEEEEeCCCCceeee
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------~~i~iwd~~~~~~~~~ 543 (660)
+...|.+.+..-.+.. .++- +..| -.+..+.|+++|..|++ |.+ +.|.+|.. -|..+.+
T Consensus 235 cy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gt 303 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGT 303 (1189)
T ss_pred EEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEE
Confidence 9999998887554421 2222 2222 35888999999999998 432 24666665 5777777
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
++.+ ...|++++|-..|-.++.+ -|+.|++=++
T Consensus 304 lkvp--g~~It~lsWEg~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 304 LKVP--GSCITGLSWEGTGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred EecC--CceeeeeEEcCCceEEEEE-ecceEEEEee
Confidence 7664 6788999997766555543 2444444333
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1e-07 Score=100.29 Aligned_cols=209 Identities=10% Similarity=0.021 Sum_probs=131.0
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e-EEEEeCC---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~-l~s~~~d---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
.|.+-|.... ..+.+.... ......|+||| . ++..+.+ ..|+++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 4555555433 334343333 67789999999 4 6644443 479999998886554333 4555667889999987
Q ss_pred EEEEe-CC--CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec--C--cEEEEeCCCCceeee
Q 006126 471 LVSSG-AD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTSQ 543 (660)
Q Consensus 471 l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d--~--~i~iwd~~~~~~~~~ 543 (660)
++... .+ ..|.++|+.++.. ..+. .. . .......|+|||+.|+...+ + .|+++|+.+++..+.
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~---~~LT---~~-~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL---TQIT---NY-P---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE---EEcc---cC-C---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 76543 33 4688889877542 1121 11 1 12335679999998887422 2 799999987776433
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecC---------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
... ... ...|||||++|+..+.. ..|++.|+.++... .+... + ... ...|+| |
T Consensus 317 t~~---g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~----~~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH---GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G----VNQ--FPRFSS-D 378 (419)
T ss_pred ccC---CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C----CcC--CeEECC-C
Confidence 321 111 24899999998876543 36888899888643 33311 1 111 588999 8
Q ss_pred CCEEEEEeCC-C--eEEEEeCCCC
Q 006126 615 PNRIALGLTN-G--RVHVIEPLES 635 (660)
Q Consensus 615 ~~~l~s~s~D-g--~v~iw~~~~~ 635 (660)
|++++..+.+ + .+.+.++...
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCCC
Confidence 9987766643 2 3556666543
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=4.8e-08 Score=90.23 Aligned_cols=241 Identities=11% Similarity=0.062 Sum_probs=157.7
Q ss_pred CCEEEEEe-CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
..+|+.|+ .|...+|...+.+. .+....+...|+-+.-.-+. .+..++.|.++++.++.-+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45788887 89999999986543 33333444444322222233 6778899999999988755433222212223789
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 540 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 540 (660)
+++++|++++++.+....|..|.+...... .+.+...... ..-.+..|+.....+|+ ..||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey---~~~~~~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEY---IENIYEAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccce---eeeeEecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999998764321 1111111111 34457889998888888 5999999999987543
Q ss_pred eeee---cCCCCCCCeEEEEEccCC--CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 541 TSQL---VPDKMDLPITYATYSCDG--KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 541 ~~~~---~~~~~~~~v~~~~~s~dg--~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
.... ..+.|.+.+..+.|++-| .+|+..-.-+.+.+-|++++...+.+.........|....+. .-.|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence 3221 123479999999999866 355555556889999999998887776554433333333344 566666 55
Q ss_pred CEEEEEeCCCeEEEEeCCCCc
Q 006126 616 NRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.-+-+.+.+ .+.=|++.+..
T Consensus 315 ~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccch-hhheeeccccc
Confidence 555555544 35666666543
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=1.8e-07 Score=109.16 Aligned_cols=258 Identities=9% Similarity=-0.020 Sum_probs=157.4
Q ss_pred EEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126 315 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 391 (660)
Q Consensus 315 ~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s 391 (660)
..++++++ |..+++-+.++.|.+||.............. .....|..-. .+-.....+++. ++.|+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-----~G~~dG~~~~-----a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-----EGLRDGSFED-----ATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-----cCCCCCchhc-----cccCCCcEEEEeCCCCEEEE
Confidence 46888875 5566666667889988875442211100000 0000011000 122335678887 666666
Q ss_pred Ee--CCcEEEEECCCCeEEEEEcCC-----------------CCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceee
Q 006126 392 AS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 392 ~~--dg~I~iwd~~~~~~~~~~~~~-----------------~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
+. .+.|+++|..++. +.++.+. -..-..++++|+ + .+++.+.++.|++||..++...
T Consensus 641 aDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~- 718 (1057)
T PLN02919 641 ADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR- 718 (1057)
T ss_pred EeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-
Confidence 65 5789999988765 3333210 012357899994 5 6777788899999998876542
Q ss_pred Eeecc---------------CCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCCCeeeece---ee---eeeeec-cCC--
Q 006126 451 KLKGH---------------QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSK---FL---HSFQTG-LVP-- 505 (660)
Q Consensus 451 ~~~~~---------------~~~v~~l~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~---~~---~~~~~~-~~~-- 505 (660)
.+.+. -.....++++|+++. +++-+.++.|++||+.++...... .. .....+ ...
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 22211 123567999999985 455566789999999875421000 00 000000 000
Q ss_pred ---CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------CCCCCeEEEEEccCCCEEEEEec
Q 006126 506 ---ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 506 ---~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
.-.....++++++|..+++ ..++.|++||..++......... ..-.....++++++|+.+++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 0013458999999987777 58899999999876654322111 01235678999999998888888
Q ss_pred CCeEEEEECCCCee
Q 006126 571 SGHVKVFDTSTLEL 584 (660)
Q Consensus 571 dg~I~iwd~~~~~~ 584 (660)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999999865
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.3e-09 Score=109.56 Aligned_cols=271 Identities=12% Similarity=0.131 Sum_probs=171.7
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCCC--cceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeee
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 349 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~ 349 (660)
.+.+.+++++.|.+|++|.+....+. ....+++.. .|+.+|..+.|-.+.++++++ ||.|.+||.--+.....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~--aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq- 819 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ--AHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQ- 819 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhh--hccCcccceeeeeccceeeec--cCcceeecccccchhHh-
Confidence 35567899999999999998742211 112233443 399999999999999887665 88999888543322100
Q ss_pred eccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEE-e-CCcEEEEECCCCeEEEEEc-----CCCCCeEEE
Q 006126 350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATFA-----NPPPIATYF 421 (660)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~-~-dg~I~iwd~~~~~~~~~~~-----~~~~~v~~v 421 (660)
..|+++. +..+.|.|+.-- ...++.+ + ..+|+++|.+.++....++ +++..++++
T Consensus 820 -------~~dapk~----------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 820 -------MEDAPKE----------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred -------hhcCccc----------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 1233222 233344444433 3444444 4 7899999999887666554 445678999
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeeceeeeee
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~ 499 (660)
+..+.| +++.+-.+|.|.+.|.++|+.+..++...-....++ .|....++....|.++.+ |-.-.+... ++ .
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh----~q-~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH----LQ-D 956 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee----ec-c
Confidence 999999 999999999999999999999988876544444442 455667887788888888 877664321 11 0
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC----CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP----TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
.... .+..- ...-|.-+++. ..+.+.+|.-. ....+..+......+..++++--|-..-++.|.+.|.|
T Consensus 957 kppp----epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 957 KPPP----EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred CCCC----cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 0000 00000 01124445554 33345565321 11223344444446778888888877777788888888
Q ss_pred EE
Q 006126 575 KV 576 (660)
Q Consensus 575 ~i 576 (660)
.+
T Consensus 1031 aL 1032 (1034)
T KOG4190|consen 1031 AL 1032 (1034)
T ss_pred ee
Confidence 75
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=1.4e-07 Score=92.17 Aligned_cols=225 Identities=17% Similarity=0.110 Sum_probs=142.2
Q ss_pred CCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 394 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
+|+|..||..+|+.+...... .....+.....++.+++++.++.++.||..+|+.+..+.. ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 578999999999999887642 1222222232334777778999999999999998877764 22222111 2245567
Q ss_pred EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC
Q 006126 472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 550 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 550 (660)
++++.++.++.+|..+|+........ ..... ..........++..++++ .++.|..+|+++|+.+.........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE--SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeeccc-ccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 77778899999999998765432111 00000 111222233336677774 6899999999999998777553211
Q ss_pred --CC------eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 551 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 551 --~~------v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.. +..-....++ .++.++.++.+.-+|+.+++.+..... .. .. . ...+ ++..++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~~-~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------SG-IY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------CC-cc--C-Ccee-eCCEEEEEe
Confidence 11 1222222344 777777787544449999996653321 11 11 1 1334 577888888
Q ss_pred CCCeEEEEeCCCCceecc
Q 006126 623 TNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 623 ~Dg~v~iw~~~~~~~~w~ 640 (660)
.++.|..||+.+|+.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999995
No 282
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=5.7e-07 Score=94.96 Aligned_cols=258 Identities=9% Similarity=-0.024 Sum_probs=156.6
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-dg~I~i 399 (660)
++..++.++.+|.+..+|.++++. +|...... .+. .....+..++.+. ++.+..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEV------------AWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCC------------cccccCCC------------ceecCCEEECCEEEEECCCCEEEE
Confidence 345677788889988888877764 56543221 111 1122355666666 899999
Q ss_pred EECCCCeEEEEEcCCCCCe-----EEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCC-------CeEEEEEeC-
Q 006126 400 FSLETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL- 466 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v-----~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-------~v~~l~~sp- 466 (660)
+|..+|+.+..+....... .+.... ++.++.++.++.+..+|..+|+.+........ ....+.-+|
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 9999999988776432111 111111 23566778899999999999987654431100 011111122
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 467 -SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 467 -~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
.+..++.++.+|.+..+|..+|+..-...+. ....+.. ++..+++ +.++.+..+|..+|+.+-..
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 3456777788999999999998654332211 1112222 2344444 68899999999998875443
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
.... .....+..+ .+..|+.++.||.|++.|..+|+.+...... ...+.. .... .+..|..++.|
T Consensus 321 ~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~---~~~~l~v~t~~ 385 (394)
T PRK11138 321 SDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVV---ADDKLLIQARD 385 (394)
T ss_pred cccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEE---ECCEEEEEeCC
Confidence 2111 111222222 2567888999999999999999988877542 111221 1122 23478888999
Q ss_pred CeEEEEeC
Q 006126 625 GRVHVIEP 632 (660)
Q Consensus 625 g~v~iw~~ 632 (660)
|.|+.++.
T Consensus 386 G~l~~~~~ 393 (394)
T PRK11138 386 GTVYAITR 393 (394)
T ss_pred ceEEEEeC
Confidence 99998875
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1e-09 Score=110.29 Aligned_cols=220 Identities=13% Similarity=0.147 Sum_probs=160.0
Q ss_pred EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-------CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 408 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 408 ~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
+..+.+|...|+.++--.+. -+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 45677899988887766666 899999999999999874 2366778889999999999988888764 5899
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE--EecCcEEEEeCCCCceeeeecCC---CCCCC
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS--IHEGQIDVYEAPTLNHTSQLVPD---KMDLP 552 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~---~~~~~ 552 (660)
|.+||.--++........ ..| +.+..+..-++ ...+++ +...+|+++|.+.+.....+... ....-
T Consensus 806 iHlWDPFigr~Laq~~da---pk~----~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDA---PKE----GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ceeecccccchhHhhhcC---ccc----CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 999998665433211111 111 33444444443 334444 37789999999988766555432 22466
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE-Ee
Q 006126 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV-IE 631 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i-w~ 631 (660)
+.+++..+.|++++++-.+|.|.+.|.++|+.+..+.+.. ...+.++ .| ..+.|+....|.++.+ |.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 8899999999999999999999999999999988876531 1111333 24 3467888888999999 99
Q ss_pred CCCCceeccCCCCcccc
Q 006126 632 PLESEVEWGKLPFTDSR 648 (660)
Q Consensus 632 ~~~~~~~w~~~~~~~~~ 648 (660)
..++-..+...+|.|..
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 98888877777777654
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=3.6e-09 Score=109.97 Aligned_cols=288 Identities=13% Similarity=0.077 Sum_probs=179.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC--CCeEEEEEe---
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR--- 385 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s--- 385 (660)
.+++..+..+|.|+-+|.++.-|...+ |+...-. +.. .+ .|. -.|-.+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~----------ppr-------~l------~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFT----------PPR-------WL------HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEE-eccCCCC----------Cce-------ee------eccCcchhcceecccCC
Confidence 678889999999999999988766543 3222111 011 11 122 224556666
Q ss_pred --CCEEEEEeCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC-ceeeEeeccCC
Q 006126 386 --GSHLFSASGGKISIFSLETF---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN 457 (660)
Q Consensus 386 --~~~l~s~~dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~ 457 (660)
..++++.+...-.+|++... .....+.+|..+|+.+.|+|+. .+++++.|..+..||+++- ..+..+..-..
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 44566666667778887532 2333456999999999999998 9999999999999999875 34555555556
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEEEeC
Q 006126 458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEA 535 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~iwd~ 535 (660)
....++|+.....+.+.+....|++||++.|. .++. ...+|. ..|+.+.|..- +..+-++.|++|+.||.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~-s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLC-SLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC----cceE-Eecccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 67788998755455556777889999999864 3444 344566 67888888763 33333369999999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEE--EecCCeEEEEECCCCeeE---EEeecccccCCCCcCcccceEEEEE
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELR---CQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s--g~~dg~I~iwd~~~~~~~---~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
............ ...+|...++-|-|+-.++ .-.+..+.+++.++.... .......+...||.+. |- .+-|
T Consensus 232 ~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~--eFlW 307 (1081)
T KOG0309|consen 232 SKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VL--EFLW 307 (1081)
T ss_pred cccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-HH--HHhh
Confidence 754322221111 2678888888886653332 112234444444332111 1111112222366332 22 3333
Q ss_pred ecC---------CCCEEEEEeCCCeEEEEeCCC
Q 006126 611 HPL---------EPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 611 sp~---------d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
-.. ..-.|+|.+.|.++|+|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 220 122699999999999999875
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.9e-07 Score=92.43 Aligned_cols=270 Identities=13% Similarity=0.137 Sum_probs=172.9
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 390 (660)
Q Consensus 313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~ 390 (660)
.-+.+.|||-|.||+|--.-| |.+|--+ +-..++.. .| ..|.-+.|| .+||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~---------------------~f~r~~RF---~H-p~Vq~idfSP~EkYLV 265 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGE---------------------SFDRIQRF---YH-PGVQFIDFSPNEKYLV 265 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCc---------------------cHHHHHhc---cC-CCceeeecCCccceEE
Confidence 446799999999999987655 4456321 11122211 24 347888888 77888
Q ss_pred EEe-C-----------CcEEEEECCCCeEEEEEcCC--CCCe-EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126 391 SAS-G-----------GKISIFSLETFQTLATFANP--PPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 454 (660)
Q Consensus 391 s~~-d-----------g~I~iwd~~~~~~~~~~~~~--~~~v-~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~ 454 (660)
+-+ . ..++|||+.+|...+.|... ...+ .-+.||.|+ ++|.-.. .+|.||+..+..++..-.-
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl 344 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL 344 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc
Confidence 854 1 47999999999999888753 2223 346899999 7776655 5788998766443322222
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec--
Q 006126 455 HQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-- 527 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d-- 527 (660)
.-..|....|+|.+..||.-+.. .++.+..+-+++.++...+. . -.=..+.|-.+|.+|++--|
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf------n---VsDckLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF------N---VSDCKLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce------e---eeccEEEeccCCcEEEEEEEee
Confidence 34578889999999888864432 34566666664444333332 1 11224677889999986211
Q ss_pred ------C---cEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC----eeEEEeec
Q 006126 528 ------G---QIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL----ELRCQINL 590 (660)
Q Consensus 528 ------~---~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~----~~~~~~~~ 590 (660)
| .+.|+.++... ++.... -...|...+|-|.|+.+++-+.+ .++.+|.+++. +++..+.
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~ve---lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d- 491 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVE---LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD- 491 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeee---cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-
Confidence 1 24555554332 233332 26788999999999877654432 57889988742 2222222
Q ss_pred ccccCCCCcCcccceEEEEEecCCCCEEEEEe---CCCeEEEEeCCC
Q 006126 591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLE 634 (660)
Q Consensus 591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s---~Dg~v~iw~~~~ 634 (660)
...++.+.|+| .|.+++.+. ..|.+.++|...
T Consensus 492 -----------k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 492 -----------KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred -----------ccccceEEEcC-CCcEEEEEEecccccceEEEecch
Confidence 13355899999 799887654 578999999884
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=4.8e-08 Score=102.44 Aligned_cols=304 Identities=11% Similarity=0.094 Sum_probs=193.2
Q ss_pred cCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126 305 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 305 l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
+++.-|.+.-.++.|+|.|- +|.|+. ..|.+-| ..+-+.++..- .|+..|+.+.|
T Consensus 9 lpG~l~~sN~~A~Dw~~~GL-iAygsh-slV~VVD---------------------s~s~q~iqsie--~h~s~V~~VrW 63 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGL-IAYGSH-SLVSVVD---------------------SRSLQLIQSIE--LHQSAVTSVRW 63 (1062)
T ss_pred CCCCCCcccccccccCccce-EEEecC-ceEEEEe---------------------hhhhhhhhccc--cCccceeEEEe
Confidence 55544666688899999884 555554 3444443 33333333222 58889999999
Q ss_pred e--------C------CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---C--eEEEEeCCCeEEEEeCC
Q 006126 385 R--------G------SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 385 s--------~------~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~---~--~l~s~~~d~~I~iwd~~ 444 (660)
. + -.||++. .|.|.+||...+..+..+..+..++..++|-+. . .+++-....++.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 7 1 1355555 699999999999988899999999999998763 2 67777888899999999
Q ss_pred CCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCee--eeceeeeeeeeccCCC-------------CC
Q 006126 445 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPE-------------TT 508 (660)
Q Consensus 445 ~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~-------------~~ 508 (660)
+|+...+.........|+.+.| |.+.+..-+..|.+.+-+.-.... ...+.++ +...|... +.
T Consensus 144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence 9998888776667778899998 667777777777776665432110 1112222 22222100 00
Q ss_pred C---------eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC--CEEEEEecCCeEEE
Q 006126 509 I---------VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKV 576 (660)
Q Consensus 509 ~---------v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~sg~~dg~I~i 576 (660)
. ...++|+|.-+.++. .....+.++|++-..++.+.... .+.+.-+.+-|++ ..|+++-.||.+.|
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 0 112567887655554 68889999999888888777654 4444556666654 68999999999999
Q ss_pred EECCCCeeEEEee-cccccCCCCc------CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 577 FDTSTLELRCQIN-LTAYAQPGTI------SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 577 wd~~~~~~~~~~~-~~~~~~~gh~------~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
|-.+......... .+-....|.. ...+.+....-.|.+...++.--.+|.+.+|.+.+|+
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 9766422111110 0000000100 1112222344456445566666678899999998754
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.7e-07 Score=86.64 Aligned_cols=232 Identities=8% Similarity=-0.034 Sum_probs=148.0
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE---EEEeCCEEEEEe-CCcEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC---FALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---v~~s~~~l~s~~-dg~I~i 399 (660)
.+||.||..|...+|...+.+... ++.|. |...|.- .+-...-+..++ |.++++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~---------~~cd~-------------snn~v~~~~r~cd~~~~~~i~sndht~k~ 142 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHL---------YQCDV-------------SNNDVTLVKRYCDLKFPLNIASNDHTGKT 142 (344)
T ss_pred cEEEeccccceeeeecccCcccce---------eeecc-------------cccchhhhhhhcccccceeeccCCcceeE
Confidence 478999999999999877654311 12221 2222211 111222233444 888888
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-c-eee-EeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-K-TKA-KLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~-~~~-~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
+++.-+..........-.+.++++++|+ +.++.++...|..|.+... + .+. ........-.+..|+.....+|+++
T Consensus 143 ~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~ 222 (344)
T KOG4532|consen 143 MVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF 222 (344)
T ss_pred EEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe
Confidence 8776543332222222337899999999 9999999999999987643 2 223 2233445556788999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE--EEEE-ecCcEEEEeCCCCceeeeecCCCC---
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSI-HEGQIDVYEAPTLNHTSQLVPDKM--- 549 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~-~d~~i~iwd~~~~~~~~~~~~~~~--- 549 (660)
.||++.|||++.-.......-. ....|. +.+..+.|++.|.. |..+ .-+.+.+.|+++++..+.+...+.
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~ss-trp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISS-TRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred cCCcEEEEEecccccchhhhcc-cCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence 9999999999874322111112 223355 79999999986643 3335 557899999999987776654321
Q ss_pred ---CCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 550 ---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 550 ---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
...|...+|+.++.-+.+.+++ .+.=|++.+.
T Consensus 299 ~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred cccccccccccccCCCcccccccch-hhheeecccc
Confidence 2447788888777766665544 2445655543
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=5.5e-07 Score=95.07 Aligned_cols=285 Identities=9% Similarity=0.004 Sum_probs=169.6
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEeCCEEEEEe-CCcEEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 400 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s~~~l~s~~-dg~I~iw 400 (660)
+..+++++.+|.+.-+|.++++. +|......... .....+...+ ..+...++.++.++ +|.+..+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYAL 135 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEEE
Confidence 55677788888888888877764 66643322100 0000000111 12333466666666 8999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEEe
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG 475 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~s 475 (660)
|.++|+.+...........+.... ++.++.++.++.+..+|..+|+.+..+......+ .+... .+..++.++
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~ 212 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGG 212 (394)
T ss_pred ECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEc
Confidence 999999888776433211111121 3467778889999999999999887665321110 11111 133567778
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec---CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCC
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 552 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 552 (660)
.+|.+..+|..+|+......+......+.. .....+..+| ++..++++.++.+..+|..+|+.+-..... .
T Consensus 213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~ 286 (394)
T PRK11138 213 DNGRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----S 286 (394)
T ss_pred CCCEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----C
Confidence 899999999998765433222100000000 0011111122 444444468899999999999876554321 1
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
...+. .++..++.++.+|.++.+|..+|+.+...... + ..... +... .+.++..++.||.|++.|.
T Consensus 287 ~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~--~~~~~--sp~v---~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 287 VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L--HRLLT--APVL---YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C--CCccc--CCEE---ECCEEEEEeCCCEEEEEEC
Confidence 11222 34678888889999999999999877654321 0 01011 1222 2457788899999999999
Q ss_pred CCCceeccCCC
Q 006126 633 LESEVEWGKLP 643 (660)
Q Consensus 633 ~~~~~~w~~~~ 643 (660)
.+|+..|....
T Consensus 353 ~tG~~~~~~~~ 363 (394)
T PRK11138 353 EDGRFVAQQKV 363 (394)
T ss_pred CCCCEEEEEEc
Confidence 99999887644
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=7.9e-09 Score=107.51 Aligned_cols=280 Identities=11% Similarity=0.078 Sum_probs=183.4
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC--CEEEEEECCCcEEEEeccCC
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg--~~l~s~s~dg~i~vw~~~~~ 343 (660)
.++..+|.|+-+|.++.-|- .+-|+.....+...... ...-.|-.+.|+|.. .+-+.........+|++...
T Consensus 28 ~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h-----~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHH-----ITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cceeeccccchhhhhhhcCe-EEEeccCCCCCceeeec-----cCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 34588999999999998774 45566653333333321 124567788888754 34444444444556876543
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCe
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIA 418 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v 418 (660)
.. ..+...+. ||...|+.+.|. ...+++++ |-.+..||+.+.. ++..+..-..+.
T Consensus 102 s~-------------------~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a 161 (1081)
T KOG0309|consen 102 SS-------------------NAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA 161 (1081)
T ss_pred Cc-------------------cceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence 21 11111122 799999999999 66899999 9999999998743 455555555667
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
..+.|+-.+ .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|.. -...+.+.+.||+|+.||...........
T Consensus 162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 789999877 6677777889999999876 56788899999999999865 33468889999999999997743222222
Q ss_pred eeeeeeccCCCCCCeEEEEEecCCcEEEE--E-ecCcEEE---------EeCCC-CceeeeecCCCCCCCeEEEEEccCC
Q 006126 496 LHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDV---------YEAPT-LNHTSQLVPDKMDLPITYATYSCDG 562 (660)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~i---------wd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg 562 (660)
+. .. .+|..-.+.|-|.-.+. . .+..+.+ |+..+ .+++.++.+ |...|....|-..+
T Consensus 242 vt---t~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 242 VT---TN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRK 311 (1081)
T ss_pred cc---cc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcc
Confidence 11 11 35556666664443332 1 2223333 33332 356777765 56666655554221
Q ss_pred ----------CEEEEEecCCeEEEEECCC
Q 006126 563 ----------KCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 563 ----------~~l~sg~~dg~I~iwd~~~ 581 (660)
-.|++=+.|..+++|-+.+
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccH
Confidence 2689999999999998764
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.93 E-value=2.6e-08 Score=93.65 Aligned_cols=258 Identities=13% Similarity=0.148 Sum_probs=162.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce-eeeeeccceeEEEecCCCCc--eeeecccCCCCCCeEEEEEe-
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~v~~s- 385 (660)
..+.|+++.|...|.||++|...|.|.+|.-..... ... -..-++....+ .++.. .-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk------f~teFQshe~EFDYLkSl---eieEKin~I~w~~ 95 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK------FFTEFQSHELEFDYLKSL---EIEEKINAIEWFD 95 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchh------hhhhhcccccchhhhhhc---cHHHHhhheeeec
Confidence 467899999999999999999999999987654431 000 00000000000 00000 123457778887
Q ss_pred ----CCEEEEEeCCcEEEEECCCCe-------------------E-----------------------EEEE-cCCCCCe
Q 006126 386 ----GSHLFSASGGKISIFSLETFQ-------------------T-----------------------LATF-ANPPPIA 418 (660)
Q Consensus 386 ----~~~l~s~~dg~I~iwd~~~~~-------------------~-----------------------~~~~-~~~~~~v 418 (660)
..+|+++.|.+|++|.+.... + .+.. ..|...+
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 446777779999999874320 0 0111 2466677
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeEeeccC-----CCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGHQ-----NRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW 488 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~~-----~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~ 488 (660)
.++.++.|. .++++ .|-.|-+|++.--.. +..++.|. .-|++..|+|. ...+...+..|.|++-|++..
T Consensus 176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 889998888 55554 577899998764321 22233332 45788899994 456777788999999999853
Q ss_pred eee-e-ceee--e------eeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-ceeeeecCCC---------
Q 006126 489 KKL-C-SKFL--H------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDK--------- 548 (660)
Q Consensus 489 ~~~-~-~~~~--~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~--------- 548 (660)
..- . .... . ..+.+-. +.|..+.|+++|+++++-.--+|++||++.. .++.++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 210 0 0000 0 0111112 5688899999999999877789999999754 4666654321
Q ss_pred -CCCCe---EEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 549 -MDLPI---TYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 549 -~~~~v---~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
....| ..+.||.|.+.+++|+..+..-||-+.
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 12233 358889999999999988777777643
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=1.3e-06 Score=100.22 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=153.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEE----ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIF----SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iw----d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~ 446 (660)
..+.|.++.+- ...++.+. +|.|.+. +..+.. +.....-..+|.+++||||+ .++..+.++++.+.+-. .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 44667788777 45555555 8888888 444322 22222346789999999999 88888888888776422 1
Q ss_pred ce------------------------eeEeec------------------------cCCCeEEEEEeCCCCEEEEEeC--
Q 006126 447 KT------------------------KAKLKG------------------------HQNRITCLAYSLSLNVLVSSGA-- 476 (660)
Q Consensus 447 ~~------------------------~~~~~~------------------------~~~~v~~l~~sp~~~~l~s~s~-- 476 (660)
.+ -..|.| +...-..++|-.||.++++.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 11 111111 1223457889999999998775
Q ss_pred -C---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe----cCcEEEEeCCCCceeeeecCC-
Q 006126 477 -D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQLVPD- 547 (660)
Q Consensus 477 -d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----d~~i~iwd~~~~~~~~~~~~~- 547 (660)
. +.++||+-+ |.... ..+.-. +--.+++|.|.|++|++.. ...|.+|.- +|-....|...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~s------tSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQS------TSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CCCceeEEEEECCC-ceEEe------ccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 2 479999976 33211 111111 3445799999999999852 245777774 45444444332
Q ss_pred -CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 548 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 548 -~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
.....|..+.|++|+..||....|. |.+|-..+.. +.+.+... . ...+. .+.|+|.+...|...+.+
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-----~--~~~~~--~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-----S--SESVN--FVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-----C--CCCCC--ceEECCCCCCEEEEEecC
Confidence 2367899999999999999987665 9999998864 23333321 0 12222 599999888888888887
Q ss_pred CeEEEEeCC
Q 006126 625 GRVHVIEPL 633 (660)
Q Consensus 625 g~v~iw~~~ 633 (660)
|.+..++..
T Consensus 371 g~~~~~~~~ 379 (928)
T PF04762_consen 371 GQYEIYDFA 379 (928)
T ss_pred CcEEEEEEE
Confidence 877665543
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=2.5e-06 Score=89.89 Aligned_cols=167 Identities=8% Similarity=-0.051 Sum_probs=102.5
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCC--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126 398 SIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 473 (660)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 473 (660)
.++|+.+++...... .........|+||| .++ +.+.+ ..|+++|+.+++. ..+..+........|+|||+.|+.
T Consensus 216 yv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F 293 (419)
T PRK04043 216 YKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVF 293 (419)
T ss_pred EEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEE
Confidence 344554444333222 33444567899999 444 44333 4788899887764 344444433445679999998887
Q ss_pred EeCC-C--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---------CcEEEEeCCCCce
Q 006126 474 SGAD-A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNH 540 (660)
Q Consensus 474 ~s~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------~~i~iwd~~~~~~ 540 (660)
.+.. + .|.++|+.+++.. .+. ..+ . ....|+|||++++. +.. ..|.+.|+.++..
T Consensus 294 ~Sdr~g~~~Iy~~dl~~g~~~---rlt--~~g-----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 294 VSDRLGYPNIFMKKLNSGSVE---QVV--FHG-----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EECCCCCceEEEEECCCCCeE---eCc--cCC-----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 7643 2 6888888875431 111 111 1 12489999999987 422 3688899987765
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 582 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~ 582 (660)
..+... .......|+|||+.|+....+ ..+.+.++...
T Consensus 362 -~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 362 -RRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred -EECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 344332 223358899999988866543 24667777543
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=1.4e-05 Score=78.40 Aligned_cols=213 Identities=19% Similarity=0.132 Sum_probs=133.4
Q ss_pred EEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-CCCeEEEEeCCCeEEEEeCCCCceeeEeec-
Q 006126 381 CFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 454 (660)
Q Consensus 381 ~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s-p~~~l~s~~~d~~I~iwd~~~~~~~~~~~~- 454 (660)
++.|. ...|.... .+.|..|+..+++... +.... ...+++. +++.++.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 34555 33444444 6889999998876543 22222 5677777 666555555544 45559988865443332
Q ss_pred ----cCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 455 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 455 ----~~~~v~~l~~sp~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
.....+.+++.|+|++.++.... |.|..++.. ++.. . ...+- ...+.++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~---~---~~~~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT---V---VADGL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE---E---EEEEE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE---E---EecCc----ccccceEECCcchhe
Confidence 34567899999999977776543 457777776 3311 1 11111 357899999999988
Q ss_pred EEE--ecCcEEEEeCCCCce----eeee-cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126 523 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 595 (660)
Q Consensus 523 ~~~--~d~~i~iwd~~~~~~----~~~~-~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 595 (660)
+++ ..+.|..+++..... ...+ ......+..-.++++.+|++.++....+.|.+++.+ |+++..+...
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 763 667899999853221 1222 111112347789999999988888888999999988 8888887743
Q ss_pred CCCcCcccceEEEEEe-cCCCCEEEE
Q 006126 596 PGTISLELYPLVIAAH-PLEPNRIAL 620 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~s-p~d~~~l~s 620 (660)
.. .+++++|. | +.+.|..
T Consensus 224 ----~~--~~t~~~fgg~-~~~~L~v 242 (246)
T PF08450_consen 224 ----VP--RPTNCAFGGP-DGKTLYV 242 (246)
T ss_dssp ----SS--SEEEEEEEST-TSSEEEE
T ss_pred ----CC--CEEEEEEECC-CCCEEEE
Confidence 11 35589995 5 5454443
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.84 E-value=9.6e-06 Score=79.64 Aligned_cols=219 Identities=13% Similarity=0.090 Sum_probs=141.5
Q ss_pred EEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126 316 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 392 (660)
Q Consensus 316 ~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~ 392 (660)
+++|.+ +|.++++--..+.|..|+..++.. .++. ... ...+++. +..|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------~~~~--------------~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------EVID--------------LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------EEEE--------------SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------EEEe--------------cCC-CceEEEEccCCEEEEE
Confidence 567888 555555544577887777665543 1111 111 5556665 6677777
Q ss_pred eCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC--------CeEEEEeCCCCceeeEeeccCCC
Q 006126 393 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp~~-~l~s~~~d--------~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|..++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 766667779998866544432 34567899999999 66655543 568888877 55443333 3456
Q ss_pred eEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCee-e-eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126 459 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK-L-CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 534 (660)
Q Consensus 459 v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd 534 (660)
.+.++|+|+++.|+ +-+..+.|..+++..... . ....+. -..... +..-.+++..+|++.++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI-DFPGGP---GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE-E-SSSS---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEE-EcCCCC---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998776 556678899999864221 1 111121 011111 246789999999887774 788999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 569 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~ 569 (660)
.. |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 86 9988888764 4589999995 7767666543
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=2.7e-06 Score=83.15 Aligned_cols=196 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred eCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe-eccC---CCe
Q 006126 385 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRI 459 (660)
Q Consensus 385 s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~---~~v 459 (660)
.++.+++++ ++.+..||..+|+.+..+..... +.......++.+++++.++.++.+|..+|+.+... .... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 377777776 99999999999999888775222 21112223336677778889999999999998774 3221 112
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC--CCCCeEEEEEecCCcEEEEEecCcEEEEeCCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 537 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~ 537 (660)
.......++..++++..++.|..+|.++|+.+...... ...+..+ ....+..-....++..++++.++.+.-+|+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~t 192 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLAT 192 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCC
Confidence 22233334788888998999999999998865544433 1111000 00112222233345444445677544449999
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
++.+-... ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus 193 g~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 193 GEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 98654322 122222 2457788888888999999999999997754
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=6.7e-06 Score=80.14 Aligned_cols=216 Identities=18% Similarity=0.109 Sum_probs=145.1
Q ss_pred CEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeC-----CCeEEEEeCC-CCceeeEeecc
Q 006126 387 SHLFSAS--GGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKGH 455 (660)
Q Consensus 387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~-----d~~I~iwd~~-~~~~~~~~~~~ 455 (660)
..++.+- .....+||..+++....+......- -...|++|| +|++.-. .|.|-|||.. +.+.+..+..|
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~ 97 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH 97 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC
Confidence 3444444 3457789999998888776544433 246899999 7776543 4689999998 66778888888
Q ss_pred CCCeEEEEEeCCCCEEEEEe------------------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 456 QNRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
.-.-..+.+.|||+.|+++. .+..+...|..+|+.+....+. ...|. ..|..+++.+
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~~ 172 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVDG 172 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEecC
Confidence 87788899999998877652 2335666777887765443332 12344 5799999999
Q ss_pred CCcEEEEE-ecC-------cEEEEeCCCCceeeeecCC-----CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCe
Q 006126 518 DQIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE 583 (660)
Q Consensus 518 ~~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~ 583 (660)
+|..++.. ..+ -|.+++. ++.+..+... .-...+-+++++++|.++++.+ ..|.+.+||..+++
T Consensus 173 ~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 99877764 222 2455543 2322222221 1257899999999999886655 46889999999999
Q ss_pred eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
.+...... . +..++-.+ ++ +++|.+.
T Consensus 251 ~~~~~~l~----------D--~cGva~~~-~~-f~~ssG~ 276 (305)
T PF07433_consen 251 LLGSVPLP----------D--ACGVAPTD-DG-FLVSSGQ 276 (305)
T ss_pred EeeccccC----------c--eeeeeecC-Cc-eEEeCCC
Confidence 88876542 1 22566555 44 6666553
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=4.6e-08 Score=95.62 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=108.9
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----ecCcEEEEe
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYE 534 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~d~~i~iwd 534 (660)
...+..++.+++++++..+....+++++.... ..+.+. ..... ..-+++.|..+...+.+. ....+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~-~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLD-VSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeee-Eeecc----cCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 34455678888888888888877887766332 111222 11111 233455565555554442 335667777
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
...+.+...+ +|-..++.++|+||+++|+++..|..|+|-.......+..+-. || ..-|. .++.-+
T Consensus 139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eFVS--~isl~~-- 204 (390)
T KOG3914|consen 139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEFVS--TISLTD-- 204 (390)
T ss_pred ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhhee--eeeecc--
Confidence 6555544333 4789999999999999999999999999988877666665543 66 44444 566555
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcee
Q 006126 615 PNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
+..|+++|.|++|++||+.+|+..
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 567999999999999999999764
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-07 Score=93.18 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=188.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.+.|+.+..+. .+++.+++.||.++.|.-..... -+.+.... .|...+.+++.+ +-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFr--aHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFR--AHLGVILSLAVSYDGW 66 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc------------------eeehhhhH--HHHHHHHhhhccccce
Confidence 788888876654 57899999999999996443110 11221111 477778888888 55
Q ss_pred EEEEEe--CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC---eEEEE-eCCCeEEEEeCCCCc-eeeEe-eccCC
Q 006126 388 HLFSAS--GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKL-KGHQN 457 (660)
Q Consensus 388 ~l~s~~--dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~---~l~s~-~~d~~I~iwd~~~~~-~~~~~-~~~~~ 457 (660)
.+.+.+ |..++++|+.+...+..++ -.+..+ +...++.. .++++ -.++.|.++|-...- ...-+ .-|..
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 566655 7899999998766553333 222323 23334443 44433 357789999976543 22233 34999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-Ceeeec-----eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcE
Q 006126 458 RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCS-----KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 530 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i 530 (660)
+|.++.+++.+..+++....|.|.-|.... .+.... ....+..-+-....+...++.|+|+|..+.+ +.|..|
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence 999999999999999999999999998873 100000 0000000010001146789999999999999 799999
Q ss_pred EEEeCCCCceeeeecCCC------------------------------C-CCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 531 DVYEAPTLNHTSQLVPDK------------------------------M-DLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~------------------------------~-~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
+++++++|+.++.+.... | ...-+.++|...|++|+.|+-=| |++.++
T Consensus 226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL 304 (558)
T ss_pred EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe
Confidence 999999988766543210 1 22345688999999999987766 899999
Q ss_pred CCCeeEEEeeccc---c--------cCCCCcC-----cccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 580 STLELRCQINLTA---Y--------AQPGTIS-----LELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 580 ~~~~~~~~~~~~~---~--------~~~gh~~-----~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
.++++...+-... + ...++.. ...+. .+.+-+ |+.+++++-.-..++++
T Consensus 305 ~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 305 DTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred ecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEE
Confidence 9998876654210 0 0111100 00000 233556 77788888788888888
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=3.8e-08 Score=92.58 Aligned_cols=252 Identities=15% Similarity=0.196 Sum_probs=158.3
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEcCCC---eEEE
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 431 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~-----~~~~~~~~~------------~~v~~v~~sp~~---~l~s 431 (660)
....|+++.|. |.||++|. .|.|.+|.-.... ....|++|. ..|..+.|..++ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44568999999 89999999 8999999765422 233455554 346778887665 7888
Q ss_pred EeCCCeEEEEeCCCCc------------------------------------------eeeEe-eccCCCeEEEEEeCCC
Q 006126 432 GFDDSSILVHCPCTKK------------------------------------------TKAKL-KGHQNRITCLAYSLSL 468 (660)
Q Consensus 432 ~~~d~~I~iwd~~~~~------------------------------------------~~~~~-~~~~~~v~~l~~sp~~ 468 (660)
.+.|++|++|.+.... +.+.+ ..|.-.|+++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8999999999875320 00111 3466778899999888
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC--CCCCCeEEEEEecCCcEEE--EEecCcEEEEeCCCCce----
Q 006126 469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLL--SIHEGQIDVYEAPTLNH---- 540 (660)
Q Consensus 469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~--~~~d~~i~iwd~~~~~~---- 540 (660)
..++++ .|-.|.+|++.-... ...+-.+ ..|. ....-|++..|+|....+. ++..|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~--sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG--SFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred heeeec-cceeeeeccccccCC--ceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888764 578899998865221 1111101 1110 0003578889999654443 35889999999983221
Q ss_pred --eee--ecCCCC------CCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCC----CcCcccc-
Q 006126 541 --TSQ--LVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPG----TISLELY- 604 (660)
Q Consensus 541 --~~~--~~~~~~------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~g----h~~~~v~- 604 (660)
+.. +.+..+ ...|..+.|+++|+++++-.. -+|+|||++. ..++.+++.+...... .+...++
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 111 111111 456888999999999988643 6799999985 3456666543211000 0111122
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
-..+.|+. |...+.+|+.....-|+-.
T Consensus 340 kFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecC-Ccccccccccccceeeecc
Confidence 23678887 6677788877766666653
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.79 E-value=4.2e-06 Score=79.03 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=129.8
Q ss_pred EEEcCCCeEEEEeCCCeEEEEeCCCC--ceeeEee---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 421 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLK---GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 421 v~~sp~~~l~s~~~d~~I~iwd~~~~--~~~~~~~---~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
++.+++|.+++.-.|..|.|-..+.. ..+.+.. ...-.=..++|+||+..|+.+...|+|++||+...+...-.+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45567774445556777766654432 1222222 122234678999999999999999999999998633221111
Q ss_pred eeeeeeccCCCCCCeEEEEEecCC-------cEEEEEecCcEEEEeCCC-----CceeeeecCCC-CCCCeEEEEEccCC
Q 006126 496 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDK-MDLPITYATYSCDG 562 (660)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~sp~~-------~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-~~~~v~~~~~s~dg 562 (660)
.. ...+. ....|..+.|.+.. ..|+...+|.++=|-+.. .+...++.... ....|.++.++|..
T Consensus 83 ~~-~~~~d--~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AM-SFPGD--LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cc-ccCCc--cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11 01111 11467777776532 345557787777666432 23333433322 37789999999999
Q ss_pred CEEEEEecC-C----------eEEEEECCCCeeEEEee------------------cc---cccCCCCcCcccceEEEEE
Q 006126 563 KCIYVSCKS-G----------HVKVFDTSTLELRCQIN------------------LT---AYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 563 ~~l~sg~~d-g----------~I~iwd~~~~~~~~~~~------------------~~---~~~~~gh~~~~v~~~~v~~ 610 (660)
++|++||.. . -+.-|.+-++.+-.... .. .+...+.....++ .|..
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence 988877642 1 25566654332211110 00 0111122234444 8999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCce--eccCCCC
Q 006126 611 HPLEPNRIALGLTNGRVHVIEPLESEV--EWGKLPF 644 (660)
Q Consensus 611 sp~d~~~l~s~s~Dg~v~iw~~~~~~~--~w~~~~~ 644 (660)
|| ||..||+...+|.|.+|++.+-.. +|.....
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 99 899999999999999999988654 7765443
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=8.6e-06 Score=79.39 Aligned_cols=230 Identities=13% Similarity=0.105 Sum_probs=145.2
Q ss_pred CeEEEEEec-CCCEEEEEECCCc-EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 313 RVVRLIYSH-SGDFLVALTQTAT-HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 313 ~V~~~~~sp-dg~~l~s~s~dg~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
....++.+| .+..++.+-..|+ ..+||..++.... .++- ..+.-.. || -.|+ |++
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a-~~gRHFy-----GH------g~fs~dG~~ 64 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWA-PPGRHFY-----GH------GVFSPDGRL 64 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcC-CCCCEEe-----cC------EEEcCCCCE
Confidence 344577888 4455556666654 4455555444311 1111 1111110 33 4677 888
Q ss_pred EEEEe-C-----CcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe------------------CCCeEEEEe
Q 006126 389 LFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------DDSSILVHC 442 (660)
Q Consensus 389 l~s~~-d-----g~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~------------------~d~~I~iwd 442 (660)
|++.- | |.|-|||.. +.+.+.++..+.-.-..+.+.||| .|+++. .+.++...|
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence 88875 3 789999998 677888888777666788899999 666542 223677788
Q ss_pred CCCCceeeEee----ccCCCeEEEEEeCCCCEEEEEeCCCc-------EEEEEcCCCeeeeceeeee-eeeccCCCCCCe
Q 006126 443 PCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHS-FQTGLVPETTIV 510 (660)
Q Consensus 443 ~~~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v 510 (660)
..+|+.+.+.. -|...|..+++.++|..++..-..|. +-+++.... ........ ....-. +.+
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~---~Y~ 219 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLN---GYI 219 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhC---Cce
Confidence 88998887743 37788999999999977766544332 334433321 10000000 000111 468
Q ss_pred EEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 511 NHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 511 ~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
-+|++++++..+++ + ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+. |.+
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC-ccE
Confidence 89999999998887 5 78899999999999887764 3456677776666 6666544 443
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=95.40 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=120.7
Q ss_pred EEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 421 FILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 421 v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
++|+-+- .-++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+..+..|+..|.|..+|++.+..-...+.+.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3666432 226667788889999988743 3343 56789999999889999999999999999999853333334442
Q ss_pred eeeccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126 499 FQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~ 573 (660)
+ -|. +.|+++..-. ++.+|++ +.+|+|++||.+.-++ ++++.++-....-.-+-+.+....+++++.|..
T Consensus 295 l--yh~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 L--YHD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred E--EcC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE
Confidence 2 243 6788887766 6777777 5999999999987666 888866422222223444577788999999999
Q ss_pred EEEEECCCCeeEEEeecc
Q 006126 574 VKVFDTSTLELRCQINLT 591 (660)
Q Consensus 574 I~iwd~~~~~~~~~~~~~ 591 (660)
.|||.++.|.++.+++.+
T Consensus 370 tRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEecccCceeeccCCC
Confidence 999999999999988743
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=2.5e-07 Score=90.59 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCEEEEEe-CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC-eE---EEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126 386 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LF---AFGFDDSSILVHCPCTKKTKAKLKGHQ 456 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~-~l---~s~~~d~~I~iwd~~~~~~~~~~~~~~ 456 (660)
+.++|.+. +....+++..... +..... -...-+++.+..+. .+ -..++...+.+|....+.+ ...-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhhhhh
Confidence 55666666 5555555554322 222221 12222344444444 22 2334445666776665443 3445799
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 535 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~ 535 (660)
..+..++|+||+++++++..|..|++-.... ...+....-||. ..|..++.-++.. |++ |.|+++++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999987766 455666777888 7899999998765 555 79999999999
Q ss_pred CCCceeeeec
Q 006126 536 PTLNHTSQLV 545 (660)
Q Consensus 536 ~~~~~~~~~~ 545 (660)
++|+.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999887663
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=1.2e-05 Score=76.11 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=130.0
Q ss_pred CCEEEEEeCCcEEEEECCCC--eEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec-----
Q 006126 386 GSHLFSASGGKISIFSLETF--QTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----- 454 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~--~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~----- 454 (660)
|+.||...|..|.|=..++. ..+.+.+ .....-+-++|+||+ .||.+...|+|++||+.. ..+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC
Confidence 67777777877777665441 2222222 222334689999999 999999999999999874 33433332
Q ss_pred --cCCCeEEEEEeCC------CCEEEEEeCCCcEEEEEcCCCeeeeceeeee-eeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126 455 --HQNRITCLAYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS- 524 (660)
Q Consensus 455 --~~~~v~~l~~sp~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~- 524 (660)
-...|..+.|.+. ...|++...+|.++-|-+..+........++ -+..|-+ ..|.++.++|..+.|++
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp--~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP--HGINSAVYHPKHRLLLVG 165 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC--CceeEEEEcCCCCEEEEe
Confidence 2245666767442 2256777788888888764332111111111 1223323 68999999999888887
Q ss_pred E-ec-C---------cEEEEeCCCCceeee--------------------ec-------CCCCCCCeEEEEEccCCCEEE
Q 006126 525 I-HE-G---------QIDVYEAPTLNHTSQ--------------------LV-------PDKMDLPITYATYSCDGKCIY 566 (660)
Q Consensus 525 ~-~d-~---------~i~iwd~~~~~~~~~--------------------~~-------~~~~~~~v~~~~~s~dg~~l~ 566 (660)
| .. . .+.-|.+-++.+... +. .......|..+..||||..||
T Consensus 166 G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 166 GCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence 3 11 1 366676543322111 00 011256788999999999999
Q ss_pred EEecCCeEEEEECCCCeeEEEeecc
Q 006126 567 VSCKSGHVKVFDTSTLELRCQINLT 591 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~~~~~~~~~~ 591 (660)
+...+|.|.+|++.+-++...+...
T Consensus 246 ~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 246 CIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEcCCeEEEEecCcchhhcccchh
Confidence 9999999999999998887777643
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=90.98 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=170.7
Q ss_pred CCeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC------------C-eEEEEeCCCeEEEEe
Q 006126 377 DSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ------------D-LFAFGFDDSSILVHC 442 (660)
Q Consensus 377 ~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~------------~-~l~s~~~d~~I~iwd 442 (660)
..-.++.|+ +..||.|+...|.+-|..+.+.++.+..|...|+.+.|.|- . .|+++...|.|.+||
T Consensus 16 sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 335677888 99999999999999999999999999999999999999763 1 578888899999999
Q ss_pred CCCCceeeEeeccCCCeEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-
Q 006126 443 PCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP- 517 (660)
Q Consensus 443 ~~~~~~~~~~~~~~~~v~~l~~sp---~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 517 (660)
...+..+..+..|..++..+.|-+ +. ..|++-....++.+|+..+|+...+.. .+| ....++.+.|
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-----ys~----~iLs~f~~DPf 166 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-----YSH----EILSCFRVDPF 166 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-----cCC----cceeeeeeCCC
Confidence 999988888888999999999966 33 467777778899999999987543322 233 2456688888
Q ss_pred CCcEEEE-EecCcEEEEeCCC-------CceeeeecCC--------------CCCC---------CeEEEEEccCCCEEE
Q 006126 518 DQIHLLS-IHEGQIDVYEAPT-------LNHTSQLVPD--------------KMDL---------PITYATYSCDGKCIY 566 (660)
Q Consensus 518 ~~~~l~~-~~d~~i~iwd~~~-------~~~~~~~~~~--------------~~~~---------~v~~~~~s~dg~~l~ 566 (660)
|.+.+.. +..|.+.+.+.-- ++..+.-..+ .+.. ....++|+|.-+.++
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 5555555 6667666665421 2222211110 0000 012356788777666
Q ss_pred EEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC-CCCEEEEEeCCCeEEEEeCCCC
Q 006126 567 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
...-...+.|+|++-...+.+.... .+.+. =+.|-|+ ....|.+.-.||.+.||.-...
T Consensus 247 fi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 6667888999999988877777643 22233 3455551 2346888889999999987653
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.5e-08 Score=107.52 Aligned_cols=211 Identities=14% Similarity=0.176 Sum_probs=148.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-eEEEEeCCC-C
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K 446 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-~I~iwd~~~-~ 446 (660)
.|....+|++|+ .++|+.|+ .|.|++|++.+|.......+|..+|+-+.-+.|| .|.+++... -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 477889999999 67899999 9999999999999999999999999999999999 444444444 577899764 4
Q ss_pred ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe
Q 006126 447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 526 (660)
Q Consensus 447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 526 (660)
...++|.+ -.++.|+.....-+.|+......+||+.++.. +.+.+.+-......-+...|+|+...++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-----l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP-----LQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH-----HHHhcCcchhhhhhccccccCCCcceEee--
Confidence 45555543 35678887655556666667888999999543 33222221100023367889999887764
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceE
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
|| .+||++..+.++.|.. -..-..-.|+|.|..++..++ |||+++.+++...+. ..-.
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~------------Ldqc 1305 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS------------LDQC 1305 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcCcc------------ccce
Confidence 33 4899988777766632 112223468999999988765 899999887766542 1223
Q ss_pred EEEEecCCCCEE
Q 006126 607 VIAAHPLEPNRI 618 (660)
Q Consensus 607 ~v~~sp~d~~~l 618 (660)
.|.|+. .|+.+
T Consensus 1306 ~VtFNs-tG~Vm 1316 (1516)
T KOG1832|consen 1306 AVTFNS-TGDVM 1316 (1516)
T ss_pred EEEecc-Cccch
Confidence 567776 46544
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=1.4e-05 Score=88.86 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=137.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|..++..++.+..+|.|.+-|.++ ........ -.++|.+++||||++.++..+..+++.+-+.
T Consensus 74 ~~fl~d~~~i~v~~~~G~iilvd~et----~~~eivg~----vd~GI~aaswS~Dee~l~liT~~~tll~mT~------- 138 (1265)
T KOG1920|consen 74 VQFLADTNSICVITALGDIILVDPET----LELEIVGN----VDNGISAASWSPDEELLALITGRQTLLFMTK------- 138 (1265)
T ss_pred EEEecccceEEEEecCCcEEEEcccc----cceeeeee----ccCceEEEeecCCCcEEEEEeCCcEEEEEec-------
Confidence 48888999999999999999998763 22222111 3789999999999999999999888876431
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcC
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLP 425 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp 425 (660)
.|++-..+.+.... ...+..-.+.|- ...=+-|+.|.....+...... ..... -.+.=+++.|..
T Consensus 139 ----------~f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 139 ----------DFEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE-QDDHKTSISWRG 205 (1265)
T ss_pred ----------cccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchh-hccCCceEEEcc
Confidence 22222111110000 011222233333 1112222222211111110000 00001 112224789999
Q ss_pred CC-eEEEE-----eCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceee
Q 006126 426 QD-LFAFG-----FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 426 ~~-~l~s~-----~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~ 496 (660)
|| ++++. ..-+.|++||.+ |..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+. -......+
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l 283 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVL 283 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-cccccccc
Confidence 99 87773 233799999976 554433333445556899999999988754 456788887654 11112222
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEE---EecC-cEEEEeCCCCc
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLS---IHEG-QIDVYEAPTLN 539 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~~d~-~i~iwd~~~~~ 539 (660)
. .+... ..+..++|+.++..|++ ...+ .|++|-+.+..
T Consensus 284 ~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 284 P-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred C-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 2 12221 34889999999999997 3344 49999987654
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=7.4e-07 Score=82.23 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=99.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 388 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~ 388 (660)
|..+-.+-+.+-.++.++++..||.+.+++.+.... ....... .|.+.......+ ++.
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~---------------~~~~i~~------~~~~~as~~~~~~~~~ 146 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLA---------------LMSRIPS------IHSGSASRKICRHGNS 146 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHh---------------hhhhccc------ccccccccceeecccE
Confidence 343333334444566789999999999887654211 0000000 111111111111 444
Q ss_pred EEEEe------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce-eeEeeccCCCe
Q 006126 389 LFSAS------GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 459 (660)
Q Consensus 389 l~s~~------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v 459 (660)
+.++. -+..+.|+++..+....-......|.+++-+|.. .+++|+.||.+.+||.+.... ...+..|+..+
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 44443 2456666665433222222223448899999977 888999999999999987643 34567799999
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 006126 460 TCLAYSL-SLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 460 ~~l~~sp-~~~~l~s~s~dg~i~vwd~~~ 487 (660)
+.+.|+| ++..|++++.||.+..||..+
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999 678899999999999999876
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=8.7e-07 Score=81.80 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=117.8
Q ss_pred eEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee------------eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 006126 418 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 485 (660)
Q Consensus 418 v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~ 485 (660)
++.+.++.+..|+++..++.+..+..-.+.+. +.+..|.++-.+-..+--++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 44444444436666666666555554433332 223333333333233334678999999999999998
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 559 (660)
+.-.. ....+...|. .-.+.+....+..+.++ .-+..+.|+++-.+....-.. ....|++++-+
T Consensus 119 ~~~~~----~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDLA----LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSH 188 (319)
T ss_pred hHHHh----hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCC
Confidence 76211 1111122221 12223333445555542 234567777653332211111 13448889988
Q ss_pred cCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 560 CDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 560 ~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
|.. +.+++|+.||.+-+||.+.......+- ..| ..+++ .|-|||.++..|+++++||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l------~ah-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL------KAH-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH------HHh-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 865 566788889999999999874332221 123 55677 9999999999999999999999999874
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.5e-05 Score=75.73 Aligned_cols=240 Identities=20% Similarity=0.096 Sum_probs=142.3
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc
Q 006126 374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~ 447 (660)
+|...|..++|+ ..++..++ +..|+|.|+++..++..+..+ ..+++++|.-|. .|..|...|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 688889999999 34678888 999999999999999888877 889999999988 88899999999999998643
Q ss_pred e-eeEeec--cCCCeEEEEE------eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126 448 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 518 (660)
Q Consensus 448 ~-~~~~~~--~~~~v~~l~~------sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 518 (660)
- +..+.+ ...+|..++. .+.|.+++..+.+ +..|.+.-... .... +.+-..+ +...++..++-
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~---~~p~-vlele~p--G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE---CLPC-VLELEPP--GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---CCCc-ccccCCC--cceeeeeecCc
Confidence 2 222221 2233443332 3345555555443 33555543211 0111 1111111 56667777776
Q ss_pred CcEEEEE--ecC---cEE----EEeCCCCceeeeecCCCCCCC-----eEEEEE-ccCCCEEEE-EecCCeEEEEECCCC
Q 006126 519 QIHLLSI--HEG---QID----VYEAPTLNHTSQLVPDKMDLP-----ITYATY-SCDGKCIYV-SCKSGHVKVFDTSTL 582 (660)
Q Consensus 519 ~~~l~~~--~d~---~i~----iwd~~~~~~~~~~~~~~~~~~-----v~~~~~-s~dg~~l~s-g~~dg~I~iwd~~~~ 582 (660)
.+.++.+ .+. +++ --|..+|.++..-........ -+..-+ .++.++++. |..-+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 6666653 211 111 122334443322211100000 011122 345566554 444588999999999
Q ss_pred eeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126 583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~ 634 (660)
+.++.+.. +.++. ++....+++. +|++- .|..++||+.++
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhe-ecceEEEEecCC
Confidence 99999875 34455 5555444444 55555 466899988654
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.53 E-value=7.6e-05 Score=80.83 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=166.0
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe--EEEEEeC-CEEEEEe-CCcEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS 398 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~s~-~~l~s~~-dg~I~ 398 (660)
+..++.++.++.+.-.|..+++. +|......... .....+ ..+...+ ..++.++ ++.|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence 34566777788888888877764 56543322100 000001 1123334 7777777 99999
Q ss_pred EEECCCCeEEEEEcCCCCC-----eE-EEEEcCCCeEEEEe---------CCCeEEEEeCCCCceeeEeeccCC------
Q 006126 399 IFSLETFQTLATFANPPPI-----AT-YFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------ 457 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~-----v~-~v~~sp~~~l~s~~---------~d~~I~iwd~~~~~~~~~~~~~~~------ 457 (660)
.+|.++|+.+..+...... +. +..+. ++.++.++ .++.+..+|..+|+.+-.+.....
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~ 202 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP 202 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence 9999999999887643321 11 11221 24444443 367899999999998876643211
Q ss_pred --------------Ce-EEEEEeCCCCEEEEEeCCC------------------cEEEEEcCCCeeeeceeeeee----e
Q 006126 458 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSF----Q 500 (660)
Q Consensus 458 --------------~v-~~l~~sp~~~~l~s~s~dg------------------~i~vwd~~~~~~~~~~~~~~~----~ 500 (660)
.+ ...++.+.+..++.++.++ .|.-+|.++|+..-....... .
T Consensus 203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 01 1234455566777787665 699999999876543322100 0
Q ss_pred eccCCCCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE--------
Q 006126 501 TGLVPETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-------- 568 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-------- 568 (660)
.+..+ ..+..+. .-+|. .+++ +.+|.+...|.++|+.+-..... ...++.+| ..++.+
T Consensus 283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 01110 0111111 11333 3444 47899999999999987665321 11233334 333332
Q ss_pred ----------ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 569 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 569 ----------~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
..+|.|.-.|+.+|+.+...........-....+.....+.. .+..+..++.||.|+.+|..+|+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence 236789999999999888876421000000000111111221 4568888889999999999999999
Q ss_pred ccCCC
Q 006126 639 WGKLP 643 (660)
Q Consensus 639 w~~~~ 643 (660)
|....
T Consensus 430 W~~~~ 434 (488)
T cd00216 430 WKFRT 434 (488)
T ss_pred eEEEC
Confidence 98554
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=0.00019 Score=66.79 Aligned_cols=141 Identities=13% Similarity=0.042 Sum_probs=93.0
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF 400 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iw 400 (660)
..+++.|+..+.+.--|.++++. .|... -...+.+-+.- |++++.|+ .|.+.+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFL 78 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEE
Confidence 34667777777776655555542 44432 23345455555 89999999 9999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
+.++|.....+.....--......+++ .+..|+.|+..+..|.++..++.+.+-..+...+-+..|-...|..+...|.
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 999998888776433322344567788 9999999999999999998888876644443344456663334444455555
Q ss_pred EEEEEcCC
Q 006126 480 LCVWDAVG 487 (660)
Q Consensus 480 i~vwd~~~ 487 (660)
+.--..+.
T Consensus 159 vlavt~~~ 166 (354)
T KOG4649|consen 159 VLAVTKNP 166 (354)
T ss_pred EEEEccCC
Confidence 54444433
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=88.62 Aligned_cols=159 Identities=15% Similarity=0.109 Sum_probs=115.7
Q ss_pred EEEe----CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-----ceeeE
Q 006126 382 FALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAK 451 (660)
Q Consensus 382 v~~s----~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-----~~~~~ 451 (660)
++|+ +-.+.+|.+..|-+-|+++|.. +.|. ....|.+..|...+ +++.|..+|.|..+|++.+ .+.+.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3666 4454455588999999988643 3343 55678888888877 9999999999999999865 34444
Q ss_pred eeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126 452 LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 529 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~ 529 (660)
+. |.+.|+++..-. ++.+|++.+.+|+|++||++--+. ...+. ..+||.+. ..-.-+...+....+++ |.|..
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--~~~V~-qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--KKSVM-QYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--cccee-eeeccccc-ccccccccccccceEEEccCeeE
Confidence 44 889999988766 788999999999999999987332 22344 56777531 11222344555556666 78999
Q ss_pred EEEEeCCCCceeeeecCC
Q 006126 530 IDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~~ 547 (660)
.+||.+++|..+.+++..
T Consensus 370 tRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEecccCceeeccCCC
Confidence 999999999998887653
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.51 E-value=0.00026 Score=70.05 Aligned_cols=267 Identities=19% Similarity=0.253 Sum_probs=158.1
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcEEEEeccCCceeeeeeccc
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
+.+.+.|... +++.-. + -.+-.-.+..||||+.+++++. .-.|.+||.++-..
T Consensus 17 ~rv~viD~d~----~k~lGm-i----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-------- 79 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGM-I----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-------- 79 (342)
T ss_dssp EEEEEEETTT----TEEEEE-E----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE--------
T ss_pred ceEEEEECCC----CcEEEE-e----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc--------
Confidence 3577777663 333332 1 1344455778999999887653 12344555444432
Q ss_pred eeEEEecCCCCceeeec-ccCCCC----CCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 006126 354 MESQLYQPSSKLVMTND-IAADPK----DSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFIL 423 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~-~~~~h~----~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~ 423 (660)
.... ++.+|. .....++++ +++++... ...|.|-|+..++.+.++.... |.-.
T Consensus 80 -------------~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~i 142 (342)
T PF06433_consen 80 -------------TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLI 142 (342)
T ss_dssp -------------EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEE
T ss_pred -------------cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEE
Confidence 2111 111111 112234555 77777666 4789999999999988876443 3333
Q ss_pred cCCC--eEEEEeCCCeEEEEeCC-CCceeeEe----eccCCCe-EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 424 LPQD--LFAFGFDDSSILVHCPC-TKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 424 sp~~--~l~s~~~d~~I~iwd~~-~~~~~~~~----~~~~~~v-~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
-|.+ .|.+-+.||++.-..+. .|+...+. .....++ ..-++...+..++..+.+|.|+--|+.........+
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc
Confidence 4444 78888899998888877 45554322 1112222 233455566677778999999999998765333233
Q ss_pred eeeeee------ccCCCCCCeEEEEEecCCcEEEE-E---ecC-------cEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126 496 LHSFQT------GLVPETTIVNHIQFHPDQIHLLS-I---HEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATY 558 (660)
Q Consensus 496 ~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~-~---~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 558 (660)
.. +.. +-.| +.-.-+++++....|++ - .++ .|.++|+.+++.+.++.. ..++.++..
T Consensus 223 ~~-~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~V 296 (342)
T PF06433_consen 223 WS-LLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAV 296 (342)
T ss_dssp EE-SS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEE
T ss_pred cc-ccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEE
Confidence 32 111 1111 34445888886666554 2 222 499999999999999865 456789999
Q ss_pred ccCCC-EEEEE-ecCCeEEEEECCCCeeEEEeec
Q 006126 559 SCDGK-CIYVS-CKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 559 s~dg~-~l~sg-~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
+.|.+ +|++. ..++.+.+||..+|+.+..+..
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 98776 55544 4578999999999999988763
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.1e-07 Score=87.67 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=145.5
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC--C-ceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCe
Q 006126 414 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK 489 (660)
Q Consensus 414 ~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~--~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~ 489 (660)
|...|+.+.......+.+++.||.++.|.-.. | +.+..+..|.+.|.+++.+-+|..+.+.+. |..++++|+.+..
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 55566665554444899999999999998543 1 234455668888999999999999999777 9999999998854
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecC-C-cEEEEE--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPD-Q-IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~-~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
......+. .-| +.+ +...+|. - ..++++ .++.+.++|-....+..-+...-|..+|..+.+.+-++.+
T Consensus 88 minmiKL~-----~lP--g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLV-----DLP--GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccc-----cCC--Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 43222222 111 122 2222232 1 234444 7789999998755533333334579999999999999999
Q ss_pred EEEecCCeEEEEECCC------CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 566 YVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 566 ~sg~~dg~I~iwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++....|.|.-|.... .++...++..... .|-....-...++.|+| ++..+.+-+.|.+|++++..+|+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence 9999999999999873 2222222211000 01112223356899999 899999999999999999999875
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00014 Score=81.34 Aligned_cols=233 Identities=12% Similarity=0.168 Sum_probs=144.1
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeC----CCCc
Q 006126 376 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP----CTKK 447 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~----~~~~ 447 (660)
...|.++.|. ++.++.+. +|.|.+-|..+.... ....-..+|.+++|+||+ .++..+.++++.+-+- -..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3678889988 55565555 899888888765432 223446789999999999 8888887777765442 1111
Q ss_pred e-------------------eeEeeccC---------------------CCeEEEEEeCCCCEEEEEe----CC-CcEEE
Q 006126 448 T-------------------KAKLKGHQ---------------------NRITCLAYSLSLNVLVSSG----AD-AQLCV 482 (660)
Q Consensus 448 ~-------------------~~~~~~~~---------------------~~v~~l~~sp~~~~l~s~s----~d-g~i~v 482 (660)
. -..|.|.. +.=+.|.|--||.++++.. .+ +.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1 11222111 1123588999999988732 23 78999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCceeeeec--CCCCCCCeEEE
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLV--PDKMDLPITYA 556 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~ 556 (660)
||.+ |..... ..... +.-.+++|-|.|..+++ . +|+.|.+|.- +|-....+. .+.....|..+
T Consensus 227 ~drE-g~Lns~------se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 227 YDRE-GALNST------SEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred eccc-chhhcc------cCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee
Confidence 9987 322111 11111 34458999999999998 2 5677999985 333322221 11224459999
Q ss_pred EEccCCCEEEE---EecCCeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 557 TYSCDGKCIYV---SCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 557 ~~s~dg~~l~s---g~~dg~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
+|+.++..|++ ......|++|-+.+.. +.+.+..+ . .. -+.|+|.....+..-..+|...+++
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--------~--~~--~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--------Q--KA--LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--------c--cc--cccccCCCceeEEEEecCCcEEEEE
Confidence 99999999997 4555669999987753 22233221 1 11 2677775555555555666555544
Q ss_pred C
Q 006126 632 P 632 (660)
Q Consensus 632 ~ 632 (660)
.
T Consensus 364 ~ 364 (1265)
T KOG1920|consen 364 F 364 (1265)
T ss_pred E
Confidence 4
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=5.8e-07 Score=59.79 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=37.0
Q ss_pred CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
|+++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=3.5e-06 Score=90.59 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=129.4
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
+..++.|+ ...+..+|+.+.+..+...-....|.-+ ..++ .+.+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 45666677 7888899999988877766545455433 3456 899999999999999999999999999999998865
Q ss_pred EeCCCCEEEEEeC---------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEEecCcEEE
Q 006126 464 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDV 532 (660)
Q Consensus 464 ~sp~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~d~~i~i 532 (660)
. .|+.|++++. |.-|+|||++.-+.+ .+++ +.. ...-+.|+|. .+.++++..|...+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~-~~~-------~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQ-FPY-------GPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcc-ccc-------CchhhhhcccccceEEEEecccceee
Confidence 5 6889998875 556899999984322 2222 221 2234677775 33334478899999
Q ss_pred EeCCC-Cce-eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 533 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 533 wd~~~-~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
.|..+ +.+ ...+..+.....+..+++|++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99432 111 22222222255599999999999999999999999997
No 319
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.7e-05 Score=85.10 Aligned_cols=203 Identities=12% Similarity=0.097 Sum_probs=129.2
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeee-c
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC-S 493 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~-~ 493 (660)
+|++.+ .++.|+.+|.|.+++- +-+.++.+..+... |..+....+..+|++.+.|+ .+++||+..-+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 466777 9999999999988873 34555777777766 55543333446888877765 48999997643222 1
Q ss_pred eee-----eeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCC---CCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126 494 KFL-----HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---TLNHTSQLVPDKMDLPITYATYSCDGKC 564 (660)
Q Consensus 494 ~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 564 (660)
..+ .+...+.. +.++.+++.+.+-+.+++| .+|.|..+.-. .......+. +....+|+.+++..+++-
T Consensus 109 ~c~~~~ri~~~~np~~--~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTN--PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCC--CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCce
Confidence 122 11111212 2688899999998889998 88988888522 111112222 223889999999999887
Q ss_pred EEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126 565 IYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 565 l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
++....-..|.+|.+....+ ...+. .+++...|.++++. ...+++|+ +..|.+|+....+.-|.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~-t~qfIca~-~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDG-TYQFICAG-SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCC-CccEEEec-CceEEEEcCCCcceeee
Confidence 44444556799999984332 22233 22233448899884 33355554 44699999886555443
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.44 E-value=0.00048 Score=74.67 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=138.0
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe-EEEEEeCCEEEEEe---------
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS--------- 393 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~v~~s~~~l~s~~--------- 393 (660)
..++.++.+|.+.-+|.++++. +|......... ....+ ....+.+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~------------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~ 172 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ------------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACG 172 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE------------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCC
Confidence 5677888899999888888774 56543321100 00000 01112234444432
Q ss_pred -CCcEEEEECCCCeEEEEEcCCCC--------------------Ce-EEEEEcCCC-eEEEEeCCC--------------
Q 006126 394 -GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS-------------- 436 (660)
Q Consensus 394 -dg~I~iwd~~~~~~~~~~~~~~~--------------------~v-~~v~~sp~~-~l~s~~~d~-------------- 436 (660)
+|.+..+|..+|+.+..+..... .+ ...++.+.+ .++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 57899999999998887753211 01 123445445 777777665
Q ss_pred ----eEEEEeCCCCceeeEeeccCCCe------EEEEEe----CCCC---EEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 437 ----SILVHCPCTKKTKAKLKGHQNRI------TCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 437 ----~I~iwd~~~~~~~~~~~~~~~~v------~~l~~s----p~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
.|.-+|..+|+.+-.+..-.... ....+. -+|. .++.++.+|.+...|.++|+.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 79999999999887664211111 011111 1343 5778889999999999998765433321
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE------------------EecCcEEEEeCCCCceeeeecCCCCC------CCeEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITY 555 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~ 555 (660)
...++.+| +...+. ..+|.+.-.|+.+|+.+-+.....+. .+...
T Consensus 331 ----------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 331 ----------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred ----------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 00122233 111111 13567888888888876555432111 11111
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
-.....+..|+.|+.||.|+.+|..+|+.+.....
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 11113567899999999999999999999998764
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=3.6e-05 Score=81.98 Aligned_cols=187 Identities=10% Similarity=0.011 Sum_probs=115.1
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEE-------------------EEEcCCC-eE-EEEeCCCeEEEE
Q 006126 386 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATY-------------------FILLPQD-LF-AFGFDDSSILVH 441 (660)
Q Consensus 386 ~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~-------------------v~~sp~~-~l-~s~~~d~~I~iw 441 (660)
|++|+.-. ...|-..++...++-+.+.-+ ...+.. +=+.||| .+ .+.-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 67777776 467777777766655544311 111111 2234555 33 223334567778
Q ss_pred eCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC----------------------------------------CCcEE
Q 006126 442 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 481 (660)
Q Consensus 442 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~----------------------------------------dg~i~ 481 (660)
|..+.+...++.- .+....+.++|+|+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 8887766655543 224456778888888777651 23466
Q ss_pred EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce------------eeeecCC
Q 006126 482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH------------TSQLVPD 547 (660)
Q Consensus 482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~------------~~~~~~~ 547 (660)
+.|.++........+..++.+ .....+.++|||+++++ + .+++|.|.|+.+.+. +.....
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666665100000122223333 35678999999999998 4 789999999987553 233322
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.......+|+++|+...+-.-|..|..||+.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33345688999998777888899999999886
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=9e-06 Score=86.59 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=130.5
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 375 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 375 h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
....++|+++++++|+-|. +|.|++++... .. .+...|... ..+| ++++|+.||+|.|..+-+.+...++
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3456778888899999999 99999999763 33 332233322 5577 9999999999999999888877777
Q ss_pred eccCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec
Q 006126 453 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 527 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d 527 (660)
. ...++.+++++|+ .+.+++|+..| +.++.-+--.. ...+ ...... +.|.++.|. |.++|-..|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v--~l~~~e---G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSV--VLSEGE---GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccce--eeecCc---cceEEEEec--CcEEEEecC
Confidence 6 5578999999997 56799999888 76665332110 1111 111222 689999998 778888888
Q ss_pred CcEEEEeCCCCceeeeecCCCC----CCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
-.|++||+.+++.+..+..+.. ......+.|.++ ..|+.| +..+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEe-cCCeEEEEEEe
Confidence 8899999999888777765321 122345777655 445555 44568888877
No 323
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.35 E-value=3.9e-07 Score=54.07 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHhhhc
Q 006126 66 EELIYLIHQFLNEEEFKETLHKLEQET 92 (660)
Q Consensus 66 ~e~~~lI~q~L~e~G~~~sa~~L~~Es 92 (660)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 324
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=1.9e-05 Score=84.10 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=127.1
Q ss_pred CeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 417 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 417 ~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
.++|++++.. .|+-|+-+|.|++++.. |.. .+...|... ..+|.++++|+.||+|.|-.+-+++......+
T Consensus 41 ~is~~av~~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVHDK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhhcc-eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 3455555432 78999999999999965 333 333334433 55899999999999999999888654333333
Q ss_pred eeeeeccCCCCCCeEEEEEecC-----CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 497 HSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
+ .++.+++++|+ .+.+++| ..| +.++.-+=.............++|.+++|. |+++|-++.
T Consensus 112 ~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 112 K----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred C----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 3 47899999998 4556664 555 777653311111111222348999999996 889998887
Q ss_pred CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 571 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 571 dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+| |+|||+.+++.+..++++...+ ......-.+.|.+ + ..|+.|-.| +|+|..+..
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~-~-~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD-E-DRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC-C-CeEEEecCC-eEEEEEEec
Confidence 77 9999999999888877653111 2233344788987 3 566665444 799988873
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.28 E-value=0.0016 Score=64.66 Aligned_cols=243 Identities=13% Similarity=0.074 Sum_probs=135.2
Q ss_pred eEecCCCCEEEEEeC----------CCcEEEEeccCcCCCcceeeeecCCC---CCCCCeEEEEEecCCCEEEEEECCCc
Q 006126 268 STSLPDADSAVCAKS----------LEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSGDFLVALTQTAT 334 (660)
Q Consensus 268 ~~~spdg~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~l~~~---~h~~~V~~~~~spdg~~l~s~s~dg~ 334 (660)
+..||||+.+++++. .-.|.+||..+ -.....+.+|.. .........++|.||++++.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V------ 111 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYV------ 111 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEE------
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc---CcccceEecCCcchheecccccceEEccCCcEEEE------
Confidence 477999999887542 24589999986 333344445541 01122234566666666544
Q ss_pred EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECC-CCeEEEEE
Q 006126 335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLE-TFQTLATF 411 (660)
Q Consensus 335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~-~~~~~~~~ 411 (660)
|++... .++.+.|...++++...- ...+..+--+ +.-+.+-| ||.+.-..+. .|+..++.
T Consensus 112 ---~N~TPa----------~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 112 ---QNFTPA----------TSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp ---EEESSS----------EEEEEEETTTTEEEEEEE----GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ---EccCCC----------CeEEEEECCCCceeeeec----CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 443322 234566666666554331 1223333223 44455555 9998888887 45554332
Q ss_pred ----cCCCCCe-EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce--eeEeec----------cCCCeEEEEEeCCCCEEEE
Q 006126 412 ----ANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKG----------HQNRITCLAYSLSLNVLVS 473 (660)
Q Consensus 412 ----~~~~~~v-~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~----------~~~~v~~l~~sp~~~~l~s 473 (660)
.....++ ..-++...+ .++.-+.+|.|+-.|+..... ...+.. -.+.-.-+++++..+.|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1222222 233455555 666688899999888875532 122211 0123345678876655554
Q ss_pred Ee---CCC-------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE-EEE-E-ecCcEEEEeCCCCce
Q 006126 474 SG---ADA-------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-LLS-I-HEGQIDVYEAPTLNH 540 (660)
Q Consensus 474 ~s---~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~-~-~d~~i~iwd~~~~~~ 540 (660)
.- .++ .|.++|+.+++.+...++. ..+.+|..+.+.+- |++ . .++.+.+||..+|+.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 21 122 4888899997766655554 46779999998774 444 4 568999999999999
Q ss_pred eeeecC
Q 006126 541 TSQLVP 546 (660)
Q Consensus 541 ~~~~~~ 546 (660)
+.++..
T Consensus 325 ~~~~~~ 330 (342)
T PF06433_consen 325 VRSIEQ 330 (342)
T ss_dssp EEEE--
T ss_pred Eeehhc
Confidence 988865
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.28 E-value=2.9e-06 Score=56.37 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126 405 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 442 (660)
Q Consensus 405 ~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd 442 (660)
|+++.++.+|...|++++|+|++ .|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=2.8e-05 Score=83.88 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=125.8
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
.++.|+--..+..+|+++++..+...-..+.|.-+. .+++.+.+|...|+|.+-|.++. ..++ ....|+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~-----~~ih-t~~aHs--- 217 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF-----ETIH-TFDAHS--- 217 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC-----ceee-eeeccc---
Confidence 677787777888999998877766654444455443 47899999999999999999983 4444 566777
Q ss_pred CCeEEEEEecCCcEEEE-Ee---------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEE
Q 006126 508 TIVNHIQFHPDQIHLLS-IH---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKV 576 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~i 576 (660)
+.|..+.. .|+.|++ |. |.-|+|||++..+.+.-+... ....-+.|.|.- ..+++.+..|...+
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceee
Confidence 57766544 5778887 42 345899999988766555432 222456777753 56777888899999
Q ss_pred EECCC-Cee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 577 FDTST-LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 577 wd~~~-~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
-|..+ +.+ ......+ +. +. .+..+.+++ +++.+|.|..+|.|.+|. ...++
T Consensus 293 vd~~~lsNP~~~~~~v~---p~---~s--~i~~fDiSs-n~~alafgd~~g~v~~wa-~~~~P 345 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVN---PN---GS--GISAFDISS-NGDALAFGDHEGHVNLWA-DRPQP 345 (1118)
T ss_pred ccccccCCCccceeEEc---cC---CC--cceeEEecC-CCceEEEecccCcEeeec-CCCCC
Confidence 88432 111 1111111 11 11 245899999 899999999999999998 33333
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00017 Score=75.98 Aligned_cols=221 Identities=10% Similarity=0.053 Sum_probs=111.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
...+..+.++|+|++++. +.||...|+....... ...+.-...+|. .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence 446789999999998887 4567776665222111 011223456677 5666
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
|+-. .++|.++.--+.+..+.++.. ..+..+-. | .|...+.+ .|.+||..+++.+..+... +|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 6666 788999743323222233322 12333322 7 66666544 8999999999999988743 3899999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC------eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce-
Q 006126 468 LNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH- 540 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~- 540 (660)
|.+++..+.+ .+.+++.+.. +.-....+..+.+-. ..|.+.+|..+ .++-...+.++- +..|..
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSNHLKY--LVNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEE--EETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCCeEEE--EEcCCcc
Confidence 9999988754 6777765442 000000122111101 47888999876 333333336655 333432
Q ss_pred -eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 541 -TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 541 -~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+..+ ..+++=+.+.+..+.++....|+.|..+.+..
T Consensus 227 ~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 IIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2333 45667777777777888888888888877653
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.6e-05 Score=73.86 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=131.7
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC-CEEEE
Q 006126 397 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVS 473 (660)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s 473 (660)
+++.+..+.+....+..+...|..++|+|.. ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. .++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5566666666666667888899999999987 7899999999999999999888888877 789999998865 45677
Q ss_pred EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------CCcEEEEEecCcEEEEeCCC--Cceeeeec
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLSIHEGQIDVYEAPT--LNHTSQLV 545 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~~~d~~i~iwd~~~--~~~~~~~~ 545 (660)
|...|.|.+||++..+.. +..+...-.- .+|..++.-+ .|-.++.+ --....|++.- +....+..
T Consensus 254 Gl~nG~VlvyD~R~~~~~----~~e~~a~~t~--~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGP----LMELVANVTI--NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eccCceEEEEEccCCCch----Hhhhhhhhcc--CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCcccc
Confidence 778999999999985421 1101110000 2444443322 33333332 22344565432 22222222
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCC-------eEEE-EECCCCeeEEEeecccccCCCCcCcccceEEEEE-ecCCCC
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSG-------HVKV-FDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-HPLEPN 616 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg-------~I~i-wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~-sp~d~~ 616 (660)
. +..+.+.++++.+-.+.++.....+ .|-. -|-.+|..++.-....+ |....+.......+ .+ +.+
T Consensus 327 l-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl~t~~ai~~~~-~nn 401 (463)
T KOG1645|consen 327 L-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKLSTTQAIRAVE-DNN 401 (463)
T ss_pred c-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCcccccccccceeccc-ccc
Confidence 2 1255666677766555555443321 1111 12233444433222111 11111111112222 34 556
Q ss_pred EEEEEe-CCCeEEEEeCCCCceec
Q 006126 617 RIALGL-TNGRVHVIEPLESEVEW 639 (660)
Q Consensus 617 ~l~s~s-~Dg~v~iw~~~~~~~~w 639 (660)
+++..+ +.+.+.+||+.+.+...
T Consensus 402 ~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEEecCCcceeEEeccchhheee
Confidence 655444 45789999999987643
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.24 E-value=0.00044 Score=72.11 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCeEEEEEe---CCEEEEEe-----CC----cEEEEECCCCeEEEE--E-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEE
Q 006126 377 DSISCFALR---GSHLFSAS-----GG----KISIFSLETFQTLAT--F-ANPPPIATYFILLPQD-LFAFGFDDSSILV 440 (660)
Q Consensus 377 ~~v~~v~~s---~~~l~s~~-----dg----~I~iwd~~~~~~~~~--~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~i 440 (660)
....++.|+ +..+.+.. +| .-.+|++..++..+. . -.....|.|++++|+. .++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 344677777 45555543 33 345677765543221 1 1567789999999999 9999999999999
Q ss_pred EeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126 441 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 441 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~ 487 (660)
||...+.. .+....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 99876632 2333556678999999999999999999999999976
No 331
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.22 E-value=0.003 Score=68.76 Aligned_cols=294 Identities=14% Similarity=0.048 Sum_probs=160.0
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 401 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd 401 (660)
+..++.++.++.|.-.|..+++. +|...................-..+++.+..++.++ |+.+.-+|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 44566677777787777777764 554332110000000000000112344455666666 99999999
Q ss_pred CCCCeEEEEEcCCCCC-eEEEEEcC---CCeEEEEe------CCCeEEEEeCCCCceeeEeeccC---------------
Q 006126 402 LETFQTLATFANPPPI-ATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ--------------- 456 (660)
Q Consensus 402 ~~~~~~~~~~~~~~~~-v~~v~~sp---~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~--------------- 456 (660)
..+|+.+......... -..+.-+| ++.++++. .+|.|..+|.++|+.+-.+..-.
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 9999998876532110 00111122 44444443 26899999999998876543211
Q ss_pred ----------------CCeE-EEEEeCCCCEEEEEeCC-----C-----------cEEEEEcCCCeeeeceeeeeeeecc
Q 006126 457 ----------------NRIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 457 ----------------~~v~-~l~~sp~~~~l~s~s~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
..++ .+++.|...++..+... + .|.-.|+++|+..-.... ..|
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~----~~~ 292 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT----TPH 292 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC----CCC
Confidence 1111 23566655566655422 2 566778888775432221 112
Q ss_pred CC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeee--------ecC--CCCC-CCe-----------
Q 006126 504 VP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQ--------LVP--DKMD-LPI----------- 553 (660)
Q Consensus 504 ~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~--------~~~--~~~~-~~v----------- 553 (660)
.. ......-+.+..+|+ .++. ..+|.+++.|-++|+.+.. +.. .... .++
T Consensus 293 D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 293 DEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred CCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 10 001112223334666 4444 4889999999999988622 100 0000 000
Q ss_pred -----------------EEEEEccCCCEEEEEecC---------------------------------CeEEEEECCCCe
Q 006126 554 -----------------TYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTLE 583 (660)
Q Consensus 554 -----------------~~~~~s~dg~~l~sg~~d---------------------------------g~I~iwd~~~~~ 583 (660)
..++++|+..+++....+ |.|.-+|+.+|+
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 125667766665543322 457778888888
Q ss_pred eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 584 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
........ .+.....+.- .+..++.++.||.++.+|..+|+..|....+
T Consensus 453 ~~W~~~~~---------~p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 453 IVWEHKED---------FPLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeeEecCC---------CCCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 88776531 1111001221 3457777888999999999999999976553
No 332
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.19 E-value=0.0078 Score=65.60 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=140.1
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEeCCEEEEEe-------CC
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-------GG 395 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~l~s~~-------dg 395 (660)
..++.++.|+.+.-.|.++++. +|+....... ....+.+ ....+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 4567777888888888777764 6664332110 0011111 112244455443 47
Q ss_pred cEEEEECCCCeEEEEEcCCCC-------------------------------Ce-EEEEEcCCC-eEEEEeCC-----C-
Q 006126 396 KISIFSLETFQTLATFANPPP-------------------------------IA-TYFILLPQD-LFAFGFDD-----S- 436 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~-------------------------------~v-~~v~~sp~~-~l~s~~~d-----~- 436 (660)
.|..+|.++|+.+..+..-.. .+ ..+++.|.. +++.+... +
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 899999999998877542111 11 134566655 55544421 2
Q ss_pred ----------eEEEEeCCCCceeeEeeccCCCeE---------EEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeece
Q 006126 437 ----------SILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 437 ----------~I~iwd~~~~~~~~~~~~~~~~v~---------~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~~~ 494 (660)
+|.-.|+++|+..-.++.....++ -+.+..+|+ .++.++.+|.+.+.|.++|+.+...
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 688889999998877765322222 122234666 6788999999999999998875221
Q ss_pred eeee---ee---e---c---------------cC-----CC-CC--CeEEEEEecCCcEEEE-Eec--------------
Q 006126 495 FLHS---FQ---T---G---------------LV-----PE-TT--IVNHIQFHPDQIHLLS-IHE-------------- 527 (660)
Q Consensus 495 ~~~~---~~---~---~---------------~~-----~~-~~--~v~~~~~sp~~~~l~~-~~d-------------- 527 (660)
.... .. . + .. |. .+ .-..++++|+..++++ ..+
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 1100 00 0 0 00 00 00 0012566666555554 211
Q ss_pred -------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 528 -------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 528 -------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
+.|.-+|+.+++..-..... .+...-.+.-.+..++.+..||.++.+|.++|+.+...
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 35777888888776555321 11111112235567778888999999999999999987
Q ss_pred ec
Q 006126 589 NL 590 (660)
Q Consensus 589 ~~ 590 (660)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 64
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.0003 Score=74.34 Aligned_cols=278 Identities=12% Similarity=0.099 Sum_probs=150.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|...|.--+++..++|++.|+.-|.+.+|+...+.... ...++..+.+.....+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------------------~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------------------LKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc----------------------ccccCccceEEEEEecchhH
Confidence 66777778888999999999999999988866554311 1111223334444555 44
Q ss_pred EEEEEe-CCcEEEEECCCCeEE-----EEE-cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc----eeeEeecc
Q 006126 388 HLFSAS-GGKISIFSLETFQTL-----ATF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH 455 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~-----~~~-~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~----~~~~~~~~ 455 (660)
++|.|+ .|.|.++-+..+... ..+ +.|...|++++|++++ .+++|...|.|..-.+.+.. ..+.+-..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 556666 689999987653321 111 2467899999999999 99999999999888877621 11222224
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC-CeEEEEEecC-----CcEEEEEecCc
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPD-----QIHLLSIHEGQ 529 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~-----~~~l~~~~d~~ 529 (660)
.+.|-.+.+. ++..|++... . -.+++++.+. +. .-|..+..+ .-...+|-|. ...|+++. -.
T Consensus 170 ds~IVQlD~~-q~~LLVStl~-r-~~Lc~tE~et------i~--QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG 237 (726)
T KOG3621|consen 170 DSEIVQLDYL-QSYLLVSTLT-R-CILCQTEAET------IT--QIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PG 237 (726)
T ss_pred CcceEEeecc-cceehHhhhh-h-hheeecchhH------HH--HhcCCCcCCccccceEEeeccccCCCceEEEec-CC
Confidence 4566666554 3334443332 2 2245554421 11 011111001 1223455543 23444443 33
Q ss_pred EEEEeCC-CCceeeeecCCC-----------CCC-----------CeEEEEEc----cCCCEEEEEecCCeEEEEECCCC
Q 006126 530 IDVYEAP-TLNHTSQLVPDK-----------MDL-----------PITYATYS----CDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 530 i~iwd~~-~~~~~~~~~~~~-----------~~~-----------~v~~~~~s----~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
.|+|... .|..+++....+ +.. .-..+.|. -.+..+++-++-| |+|+|.++.
T Consensus 238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~ 316 (726)
T KOG3621|consen 238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNS 316 (726)
T ss_pred CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccc
Confidence 5677654 344444422110 000 00011111 1223344444444 899999887
Q ss_pred eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+...-... ... +..|+. .++-|..--.||.+++..+.+.+
T Consensus 317 ~v~l~se~---------~~D--I~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 317 QVYLWSEG---------GHD--ILDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEeecC---------CCc--eeEEee---cCceEEEEecCCceeEEEeehhH
Confidence 66544321 122 335553 45556666677788888777654
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00046 Score=74.53 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=129.9
Q ss_pred CeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCC-----eEEEEeCCCC---
Q 006126 378 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-----SILVHCPCTK--- 446 (660)
Q Consensus 378 ~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~-----~I~iwd~~~~--- 446 (660)
.+.|+.-++..++.|+ +|.|.+++-. .+.++.++.+...+...-+.-++ .|++.+.|+ .+++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5665555578888888 9999888743 44557777777663233334444 666665554 5999998643
Q ss_pred ---cee--eEeec-----cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 447 ---KTK--AKLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 447 ---~~~--~~~~~-----~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
+++ +.+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.-+-- +.+..+........ .+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~---RDrgsr~~~~~~~~--~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL---RDRGSRQDYSHRGK--EPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch---hccccceeeeccCC--CCceeeEEe
Confidence 233 12222 3567889999999999999999999998843211 11111111111111 689999999
Q ss_pred cCCcEE-EEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 517 PDQIHL-LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 517 p~~~~l-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+++.+ .++....|.+|.+. |+....-..+.|+.++.|.+|++....+++++ +..|++|+.....+-..+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 999884 34677889999997 44422221234688899999987655344443 3469999988655444443
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.13 E-value=0.0025 Score=66.16 Aligned_cols=267 Identities=18% Similarity=0.162 Sum_probs=144.9
Q ss_pred ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcE
Q 006126 320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 397 (660)
Q Consensus 320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I 397 (660)
|||+++++.... .-+.|... ......++|..++....... ....+....|+ |+.++...++.|
T Consensus 1 S~d~~~~l~~~~--~~~~~r~s----------~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATN--YTKQWRHS----------FKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL 65 (353)
T ss_dssp -TTSSEEEEEEE--EEEESSSE----------EEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred CCCCCeEEEEEC--cEEeeeec----------cceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence 688988877654 22223221 11223566777766554332 24567888999 899999999999
Q ss_pred EEEECCCCeEEEEEc-CC----------------CCCeEEEEEcCCC-eEEEEeCC-C----------------------
Q 006126 398 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S---------------------- 436 (660)
Q Consensus 398 ~iwd~~~~~~~~~~~-~~----------------~~~v~~v~~sp~~-~l~s~~~d-~---------------------- 436 (660)
.+++..++...+.-. +. -..-..+.||||| .|+....| .
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES 145 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence 999998775443221 20 1122467899999 66654322 1
Q ss_pred -------------eEEEEeCCCCceee-E-e---eccCCCeEEEEEeCCCCEEEEEe--CCC---cEEEEEcCCCeeeec
Q 006126 437 -------------SILVHCPCTKKTKA-K-L---KGHQNRITCLAYSLSLNVLVSSG--ADA---QLCVWDAVGWKKLCS 493 (660)
Q Consensus 437 -------------~I~iwd~~~~~~~~-~-~---~~~~~~v~~l~~sp~~~~l~s~s--~dg---~i~vwd~~~~~~~~~ 493 (660)
.+.++|+.+++... . . ......+..+.|.++++.++..- .+. .+.+.|..++....
T Consensus 146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~- 224 (353)
T PF00930_consen 146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV- 224 (353)
T ss_dssp EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-
T ss_pred cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-
Confidence 23445555544321 1 1 12344577889999988444433 332 46677887754311
Q ss_pred eeeeeeeeccCCCCCCeEEEEEe-cCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEE-EEEccCCCEEE-
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY- 566 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~- 566 (660)
.......+.- ..-....|. +++..++. + .+| .|++++...+.. ..++.+ ...|.. +.++++++.|+
T Consensus 225 -~~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G--~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 225 -VLEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG--DWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp -EEEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S--SS-EEEEEEEECTSSEEEE
T ss_pred -EEEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC--ceeecccceEcCCCCEEEE
Confidence 1111111111 122255665 66666655 4 555 577778765553 344432 556755 77888887666
Q ss_pred EEecC----CeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 567 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 567 sg~~d----g~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
++..+ ..|+.-++. .+++ ..+... ....+ .+.||| ++++++-.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~--------~~~~~--~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEP-KCLTCE--------DGDHY--SASFSP-DGKYYVDT 345 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEE-EESSTT--------SSTTE--EEEE-T-TSSEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCCe-EeccCC--------CCCce--EEEECC-CCCEEEEE
Confidence 44432 357777777 5544 444421 11113 799999 78876643
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=0.00094 Score=69.77 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=69.8
Q ss_pred EEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 530 IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 530 i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
-.+|+....+. +..... .....+.+++++|+.+.++.|+.||.|.+||...+..... ...+.++.
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------ka~~~P~~ 304 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------KAEFIPTL 304 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------eecccceE
Confidence 35566644332 222222 2478899999999999999999999999999987743322 22344668
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 608 IAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++||| +|.++++|++-|.+.+||+.-+.
T Consensus 305 iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 305 IAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 99999 89999999999999999987543
No 337
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=98.08 E-value=8.6e-06 Score=75.05 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=70.0
Q ss_pred ccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc---------HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhH
Q 006126 63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---------INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMF 133 (660)
Q Consensus 63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~---------~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~ 133 (660)
..++|+++||+.||-..||.++|..+.+|+|+..+ -..++.+|..|+.++|...+.++.+.- -.-....+
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei-Ld~n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI-LDTNRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH-HccchhHH
Confidence 56899999999999999999999999999999872 567899999999999999998772210 01123345
Q ss_pred HHHHHHHHHHHhhhc
Q 006126 134 SQIQRQKYLEAVDRQ 148 (660)
Q Consensus 134 ~~i~~q~~lell~~~ 148 (660)
+.+++|+++|++..+
T Consensus 103 F~Lq~q~lIEliR~~ 117 (228)
T KOG2659|consen 103 FHLQQLHLIELIREG 117 (228)
T ss_pred HHHHHHHHHHHHHhh
Confidence 669999999999988
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.08 E-value=3.7e-06 Score=87.13 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=150.9
Q ss_pred CCCCeEEEEEe---C-CEEEEEe-CCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCC--eEEEEe----CCCeEEEE
Q 006126 375 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 441 (660)
Q Consensus 375 h~~~v~~v~~s---~-~~l~s~~-dg~I~iwd~~~~~~--~~~~~~~~~~v~~v~~sp~~--~l~s~~----~d~~I~iw 441 (660)
....+.|+++. . ..++.|. +|.|.+-.+..... .....++....++++|++-+ .||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788877 3 3567777 89998887764322 22344677889999999976 676664 35589999
Q ss_pred eCCCC--ceee--Eeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 442 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 442 d~~~~--~~~~--~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
|+.++ .+.. .|.+ ......+++|..+.+.+++|.....+.++|++.... ....+. + ..+..+...
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn------T---k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN------T---KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh------h---hhcccceec
Confidence 99876 2221 2222 334556888888889999999999999999985211 111111 1 246678888
Q ss_pred c-CCcEEEEEecCcEEEEe-CCCC-ceeeeecCCC--CCCCeEEEEEccCCC-EEEEEec-CCeEEEEECCCC------e
Q 006126 517 P-DQIHLLSIHEGQIDVYE-APTL-NHTSQLVPDK--MDLPITYATYSCDGK-CIYVSCK-SGHVKVFDTSTL------E 583 (660)
Q Consensus 517 p-~~~~l~~~~d~~i~iwd-~~~~-~~~~~~~~~~--~~~~v~~~~~s~dg~-~l~sg~~-dg~I~iwd~~~~------~ 583 (660)
| .+.|+++..||.|.+|| .++- .++..+.... ....+..++|+|... .+++... .++|+.+|+..- +
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence 8 78889887899999999 3332 2333332211 123488999998643 4444444 488999997531 1
Q ss_pred eEEEeecccccCCCCcCcccceEEEEEecCC-CCEEEEEeCCCeEEEEeCC
Q 006126 584 LRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d-~~~l~s~s~Dg~v~iw~~~ 633 (660)
....+......+..|.+..-.+.++.||+.+ -+...++-..-++.-+++.
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1111111110011222211223388999855 2345555555555555554
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.07 E-value=0.0019 Score=68.17 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=117.9
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeecc
Q 006126 378 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 455 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~ 455 (660)
....+.++ |++++.++||...++.....+....- ....++|.+.+.+|+-...+.|.++.--+.+....+..
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~- 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL- 107 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-
Confidence 35677787 88888888999999986555443322 23367898866777777788999964323333233332
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 535 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~ 535 (660)
...+..+ |. |..|...+.+ .|.+||..+++.++...+. .|..+.|+++|.+++...+..+.+++.
T Consensus 108 ~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-----------~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 108 PFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS-----------AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------------E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred CcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEecC-----------CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 1234444 22 7777776644 8999999997655443332 478999999999999976778888876
Q ss_pred CCC-----------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126 536 PTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 536 ~~~-----------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
... ..+..+.. -...|.+.+|..| -++++. .. .|+- +-.|+.-..-. -+.+++
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~---------ld~~~y 236 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAH---------LDKPLY 236 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE----------SS--E
T ss_pred cchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEE---------cCCceE
Confidence 433 01222211 1567888888765 333333 33 6655 44444322211 145677
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
-+.+.| ..+.+.....|+.|..+.+...+
T Consensus 237 --llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 237 --LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred --EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 456667 56788888899999999887554
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0018 Score=67.39 Aligned_cols=271 Identities=11% Similarity=0.115 Sum_probs=139.9
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEE
Q 006126 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 392 (660)
Q Consensus 313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~ 392 (660)
.|.++.|+++..-|+.|...|.|.||.+..++.... .....-.|.....+ .|.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~~~~~-------~~~---------------- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYNFRRF-------SLN---------------- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S---------GG----------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCcccccc-------ccc----------------
Confidence 588999999988899999999999999876643110 00000000000000 000
Q ss_pred eCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--ec------c
Q 006126 393 SGGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H 455 (660)
Q Consensus 393 ~dg~I~iwd~~~---------~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~------~ 455 (660)
++.-.+-|+.. ..+..-+....+.|++++.|.-|.++.|..+|.+.|.|++....+..- .. .
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred -CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence 00111222211 123333445578999999987779999999999999999877666542 11 2
Q ss_pred CCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEEcCC-Cee-eeceeeeeeeeccCCCCCCeEEEE-EecC------
Q 006126 456 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAVG-WKK-LCSKFLHSFQTGLVPETTIVNHIQ-FHPD------ 518 (660)
Q Consensus 456 ~~~v~~l~~sp-----~~---~~l~s~s~dg~i~vwd~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~sp~------ 518 (660)
...|+++.|.- |+ -.+++|+..|.+.+|.+.- ... ....... ....+. +.|..+. |+.+
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence 34678888852 33 3688899999999998752 111 1111111 111222 3555544 3221
Q ss_pred ---------------CcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE-----ccCCCEEEEEecCCeEEEEE
Q 006126 519 ---------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-----SCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 519 ---------------~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----s~dg~~l~sg~~dg~I~iwd 578 (660)
..+++++.+..++++...+.+....... .......+++ ...+..|++-..+|.|++|.
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 1245557888999999988877655531 1233334455 23567888888999999999
Q ss_pred CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
+..-+.+.......... ..... ..++++ +|+.++-.|..
T Consensus 289 LP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~gps 327 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTGPS 327 (395)
T ss_dssp TTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SSS
T ss_pred CCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeCcc
Confidence 99988887776531100 11122 456677 78877766544
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.05 E-value=0.012 Score=55.26 Aligned_cols=308 Identities=11% Similarity=0.071 Sum_probs=152.7
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
.+++.|+..+.+.--|... +.+.--.. -..+|.+-+.- -|++++.|...|.+.+-+.+++..
T Consensus 24 T~v~igSHs~~~~avd~~s----G~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--------- 85 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQS----GNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--------- 85 (354)
T ss_pred eEEEEecCCceEEEecCCC----CcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---------
Confidence 3555666666666666653 32221111 13344443333 577899999999999888887753
Q ss_pred eEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCeEEEE
Q 006126 355 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QDLFAFG 432 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~~l~s~ 432 (660)
.|+-..-..+ ..-..+++++..+..|+ |++....|..+..++...+.......+-+..| ++.|..+
T Consensus 86 ---~w~f~~~~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 86 ---IWNFVILETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ---eeeeeehhhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 4542211111 11112344488899999 99999999999999988776555555556667 3455555
Q ss_pred eCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeee-eeeeccCCCC
Q 006126 433 FDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPET 507 (660)
Q Consensus 433 ~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~ 507 (660)
...|.+.--..+++.. .++-.| .++|.+ +| -+..+..+..||.+.-+| ..|+.+...... .++.+...
T Consensus 154 ~t~G~vlavt~~~~~~-~~~w~~~~~~PiF~---splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~-- 226 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYSS-TEFWAATRFGPIFA---SPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCE-- 226 (354)
T ss_pred eccceEEEEccCCCCc-ceehhhhcCCcccc---CceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceeccccc--
Confidence 6666655555544421 112111 122221 11 133444555566666555 333222110000 00000000
Q ss_pred C--CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cC---CCEEEEEecCCeEEEEE---
Q 006126 508 T--IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CD---GKCIYVSCKSGHVKVFD--- 578 (660)
Q Consensus 508 ~--~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d---g~~l~sg~~dg~I~iwd--- 578 (660)
+ ....+.+-.++-+.+...-..--+|..++|.....+.... ....++ |. .++|..++.||++.|--
T Consensus 227 s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~ 301 (354)
T KOG4649|consen 227 SRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK 301 (354)
T ss_pred CCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEecc
Confidence 0 0012222222222222211223467766665544443211 122222 22 35677888899998873
Q ss_pred ------CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 579 ------TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 579 ------~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
-+.+++....... . .+.+...-+.. +| +|+.|+.|..|+-||+.+.
T Consensus 302 sl~~~~s~~g~lq~~~~~e-l------~~eIFsSPvii---~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 302 SLAEISSNGGELQNLEAIE-L------SNEIFSSPVII---DG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cccccccCCCccceEEEee-c------CcccccCCeEE---cc-EEEEEEccCeEEEEecccc
Confidence 3334332221100 0 11121111111 33 5778889999999999764
No 342
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.03 E-value=4.9e-06 Score=53.28 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 006126 64 TKEELIYLIHQFLNEEEFKETLHKLEQETRVF 95 (660)
Q Consensus 64 ~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~ 95 (660)
.++++.++|+|||.+.||..||.+|++|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999974
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.03 E-value=1.8e-06 Score=89.39 Aligned_cols=204 Identities=14% Similarity=0.128 Sum_probs=132.5
Q ss_pred CCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeC-CCCEEEEEe----CCCcEEEEEc
Q 006126 416 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSG----ADAQLCVWDA 485 (660)
Q Consensus 416 ~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp-~~~~l~s~s----~dg~i~vwd~ 485 (660)
..+.|++++-+. .+++|..+|.|.+-.++.... -....+|....++++|++ |.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345566665543 788999999999988765432 233456788899999998 556677663 2567999999
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEcc-CC
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSC-DG 562 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-dg 562 (660)
.++-........ +..+.. ....+++|..+.+.+.+| ....++++|++. ......+ ....+..+..+| .+
T Consensus 137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSP 208 (783)
T ss_pred ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCC
Confidence 885222222222 112222 456689999888888886 667999999972 2222222 144566788888 77
Q ss_pred CEEEEEecCCeEEEEEC-CCCe-eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEEeCCC
Q 006126 563 KCIYVSCKSGHVKVFDT-STLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 634 (660)
Q Consensus 563 ~~l~sg~~dg~I~iwd~-~~~~-~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw~~~~ 634 (660)
.++++.. ||.|.+||. .+-+ ++..+. + .....+-....++|.|+....+++.+.| ++|+.+++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~-~-----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIIL-R-----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHh-h-----CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8887776 999999994 2211 111111 0 0001112245899999877788888876 7899999864
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.011 Score=60.01 Aligned_cols=280 Identities=15% Similarity=0.104 Sum_probs=132.6
Q ss_pred EEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126 317 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 393 (660)
Q Consensus 317 ~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~ 393 (660)
=+|.+||+.|+.++. ||.-.+| +.|..+++..+.+- +.........++ ++.++-..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly-------------------~lDL~t~~i~QLTd--g~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLY-------------------LLDLATGEITQLTD--GPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEE-------------------EEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceE-------------------EEEcccCEEEECcc--CCCCCccceEEecCCCeEEEEE
Confidence 467889977776665 6655444 33445555554332 111111123333 56665555
Q ss_pred -CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc--CCCeEEEEeC-----------------------CCeEEEEeCCCCc
Q 006126 394 -GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD-----------------------DSSILVHCPCTKK 447 (660)
Q Consensus 394 -dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s--p~~~l~s~~~-----------------------d~~I~iwd~~~~~ 447 (660)
+..|+..|+.+.+....+..+...+-...|. .|+..++|.. ...|...|+.+|+
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 5688899999988766666666666556664 3342232211 1356667888887
Q ss_pred eeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
....+. ....+..+.|+|....+++=+..| .-|||-+++.... ..++.....+ ..+..=-|.|||..|
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~-----e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG-----ESVGHEFWVPDGSTI 252 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-----EEEEEEEE-TTSS-E
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC-----cccccccccCCCCEE
Confidence 655554 456778899999554444433222 1255655442111 1222211111 345556789999988
Q ss_pred EE-Ee-----cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----------------CeEEEEECC
Q 006126 523 LS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDTS 580 (660)
Q Consensus 523 ~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----------------g~I~iwd~~ 580 (660)
.. +. +..|.-+|+.+++...... .......-.++||++++-=+.| -.|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 76 42 3357778888876543332 2235566677999988753333 157788888
Q ss_pred CCeeEEEeeccc---ccCCCCcCcccceEEEEEecCCCCEEE-EEeCCCeEEEEeC
Q 006126 581 TLELRCQINLTA---YAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEP 632 (660)
Q Consensus 581 ~~~~~~~~~~~~---~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~Dg~v~iw~~ 632 (660)
.+..... ..|. ....|+.. +.=-.+.|+| |+++++ ++...|...||-+
T Consensus 329 ~~~~~~l-~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 329 AGRFRKL-ARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp TTEEEEE-EE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEE
T ss_pred cCceeee-eeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEE
Confidence 7765432 2221 12223211 1112689999 777765 4556677777654
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0047 Score=61.84 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=112.6
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCCeEEEEeCC------------Ce
Q 006126 377 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------SS 437 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp~~~l~s~~~d------------~~ 437 (660)
..+.++..- +..|+++. .-+.+++.+++..+..+.. .....+.+...|+|.+..++.. |.
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred CCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 334444444 44555444 3455666666655333321 1234567888999933333333 34
Q ss_pred EEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCC--CeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126 438 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ 514 (660)
Q Consensus 438 I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~ 514 (660)
++.+|. .+..++.+..+-..-+.++||||++.|..+... +.|.-|++.. +......... .....+ +..-.++
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~--~~~~~~--G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEP--GLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE--EccCCC--CCCCceE
Confidence 566665 466666666666677899999999887776654 7888887763 2221111111 111111 4556788
Q ss_pred EecCCcEEEEE-ec-CcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 006126 515 FHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 570 (660)
Q Consensus 515 ~sp~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~ 570 (660)
...+|.+.+++ .+ +.|.+|+.. ++.+..+..+ ...+++++|- |+.+.|+..+.
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEec
Confidence 88899888664 33 389999997 9999888764 4778888886 56666554443
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.0007 Score=71.08 Aligned_cols=178 Identities=16% Similarity=0.141 Sum_probs=110.6
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEE---eCC-CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG---FDD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~---~~d-~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
.+.+-|-. |...+.+......+..-.|+|++ .++.- ... ..++++|+.+++....+. ..+.-....|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 45555544 55556666566667778999999 43322 222 469999999887655443 2333345579999998
Q ss_pred EEEEe-CCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecC--cEEEEeCCCCceeee
Q 006126 471 LVSSG-ADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 543 (660)
Q Consensus 471 l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~--~i~iwd~~~~~~~~~ 543 (660)
|+... .|| .|.++|+.++.. ..+..+. +.-..-.|+|||++++.. ..| .|.++|.+.+.. ..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~------~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNL------PRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcc------eecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence 77654 455 477778877441 1111111 223367899999999983 333 588888865554 44
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEec-CCe--EEEEECCCCeeEEEe
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLELRCQI 588 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~--I~iwd~~~~~~~~~~ 588 (660)
+... ...-..-.|+|||++++..+. +|. |.+.|+.++.....+
T Consensus 321 iT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 321 LTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred eecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 4332 222227789999999987664 344 777777776643333
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0002 Score=76.78 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=77.6
Q ss_pred CCEEEEEe-----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 386 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 386 ~~~l~s~~-----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
..++++++ .|.|.||- ++|++.+... .+-.+++++|+|.. .|+.|-.-|.+.+|...+.+.-.....|..+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 34555544 37777774 4555443332 22345679999999 99999999999999988776666667799999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~ 487 (660)
..+.|||+|..++++..-|.+.+|....
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 9999999999999999999999998763
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.90 E-value=0.012 Score=60.95 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=133.4
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCC--------------CCCeEEEEEecCCCEEEEEECC
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT 332 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h--------------~~~V~~~~~spdg~~l~s~s~d 332 (660)
...|||||+.+|.... +.+.+++..+ +...+++..+..+ -+.-..+.|||||++||....|
T Consensus 47 ~~~~sP~g~~~~~v~~-~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 47 DAKWSPDGKYIAFVRD-NNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EEEE-SSSTEEEEEET-TEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cceeecCCCeeEEEec-CceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3499999999998864 7899998764 4555544333100 1123568899999999998775
Q ss_pred -CcEEEEe---ccCCce---eee--------eeccceeEEEecCCCCceeeeccc---CCCCCCeEEEEEe--CCEEEEE
Q 006126 333 -ATHKLWK---WQSNKQ---SLE--------EENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSA 392 (660)
Q Consensus 333 -g~i~vw~---~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~s--~~~l~s~ 392 (660)
..+..+. ...... ... .......+.+++..++........ ......+..+.|. +..|+..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 4444333 323221 111 122445667889888875432221 1245568889998 4424443
Q ss_pred e---C---CcEEEEECCCCeEEEEEc-CCCCC---eEEEEEc-CCC--eEEEEeCCC--eEEEEeCCCCceeeEeeccCC
Q 006126 393 S---G---GKISIFSLETFQTLATFA-NPPPI---ATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 393 ~---d---g~I~iwd~~~~~~~~~~~-~~~~~---v~~v~~s-p~~--~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~ 457 (660)
- + -.+.+.|..++....... ..... .....+. +++ .+.....|| .|++++...+. ...+....-
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence 3 2 247777887766543333 12222 2355554 666 555555777 57777777655 445554556
Q ss_pred CeEE-EEEeCCCCEEEE-EeCC----CcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 458 RITC-LAYSLSLNVLVS-SGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 458 ~v~~-l~~sp~~~~l~s-~s~d----g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
.|.. +.|+++++.+.. +..+ ..+..-++. .+.. .++. ... ..-..+.|||+|++++.
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT----~~~---~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLT----CED---GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESS----TTS---STTEEEEE-TTSSEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Eecc----CCC---CCceEEEECCCCCEEEE
Confidence 6744 678888776654 4432 245555666 4332 1111 111 12258999999999987
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.018 Score=60.70 Aligned_cols=182 Identities=15% Similarity=0.078 Sum_probs=100.9
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe-------eccCCCeEEEEEeCCC
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL 468 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~ 468 (660)
.|.+|+.. |+.+.++.-..+.+.++.|+.+..|++-..||.+++||+. |+....+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 58888875 6677776644488999999887667777899999999986 3331111 1111222233333355
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec----cCCCCCCeEE-EEEecCCcEEEE-EecCcEEEEeCCCCceee
Q 006126 469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~-~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 542 (660)
++.-..++.+.+..--..... ...+...+.. +.. ..... ..++.+....+. ..++.+.+.+-...+.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~--~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWW--PSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred --EEEECCCCeEEEEeCccccch-hhccccCCCcccccccc--cccccceEeecCcceEEEEecCCEEEEEEcccccc--
Confidence 333334555444422221100 0001001110 000 01111 234444444444 4555666554332211
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
+. ..+++..+++||+|+++|.-..+|.+.|....-.+....+..
T Consensus 213 -i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 213 -ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred -cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 21 257899999999999999999999999998776666666553
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00089 Score=71.98 Aligned_cols=105 Identities=7% Similarity=-0.061 Sum_probs=76.3
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC-E
Q 006126 315 VRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-H 388 (660)
Q Consensus 315 ~~~~~spdg~~l~s~s~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~-~ 388 (660)
+-..|+|...+++.++. .|+|.||- .+|+.-+.. ...-.+++++|+ .+ .
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa----------------------dtGEPqr~V---t~P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA----------------------DTGEPQRDV---TYPVHATSLCWHPEEFV 73 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe----------------------cCCCCCccc---ccceehhhhccChHHHH
Confidence 44678999998888775 36676653 222221111 122235678999 44 4
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~ 444 (660)
|+.|- -|.+.+|...+.+.......|+.+|..+.|||+| .++++..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55555 6999999998877766667899999999999999 99999999999999765
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.84 E-value=0.0025 Score=68.39 Aligned_cols=181 Identities=11% Similarity=0.012 Sum_probs=109.2
Q ss_pred EecCCCCEEEEE-eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCC----cEEEEeccCC
Q 006126 269 TSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----THKLWKWQSN 343 (660)
Q Consensus 269 ~~spdg~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg----~i~vw~~~~~ 343 (660)
=++|||+.+... ...+.+.+.|.++ .....++.+ .+....++++|+|+++++.+.+. ++..-+....
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~et---meV~~qV~V-----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAET---MEVAWQVMV-----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECcc---ceEEEEEEe-----CCCcccceECCCCCEEEEeccCcccCcceeeeccccC
Confidence 567899876443 3457788888874 233334333 33556789999999998886432 1211111000
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC----C-eEEEEEcCCCC
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET----F-QTLATFANPPP 416 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~----~-~~~~~~~~~~~ 416 (660)
. ....++... +. ++. |++... .++.|.+.|..+ + +.+..+. -..
T Consensus 271 d----------~~vvfni~~---------------ie--a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGK 321 (635)
T PRK02888 271 D----------WVVVFNIAR---------------IE--EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPK 321 (635)
T ss_pred c----------eEEEEchHH---------------HH--HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCC
Confidence 0 001111110 00 011 444333 467899999988 3 4444443 444
Q ss_pred CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce------------eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126 417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 482 (660)
Q Consensus 417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v 482 (660)
....+.++||| .++++..+.+|.|.|+.+.+. .....--.+ ....+|.++|+...+...|..|..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEE
Confidence 56689999999 555666789999999987542 222222222 334579999998888899999999
Q ss_pred EEcCC
Q 006126 483 WDAVG 487 (660)
Q Consensus 483 wd~~~ 487 (660)
||+..
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99976
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.79 E-value=0.051 Score=55.21 Aligned_cols=255 Identities=14% Similarity=0.109 Sum_probs=123.1
Q ss_pred ecCCCCceeeecccC-C--CCCCeEEEEEe--CCEEEEEe--CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126 359 YQPSSKLVMTNDIAA-D--PKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-L 428 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~-~--h~~~v~~v~~s--~~~l~s~~--dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~ 428 (660)
-|+.+|..+..+... + |.-..+.=+|. |+.|+.++ +| .+.+.|+.+++..+--.+.........++|++ .
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 366777655444311 0 11111222444 66665555 54 68888999988776555432322245677888 6
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe--CCCCEEEEEeC----------------------CCcEEEEE
Q 006126 429 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LSLNVLVSSGA----------------------DAQLCVWD 484 (660)
Q Consensus 429 l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~----------------------dg~i~vwd 484 (660)
++-......++-.|+++.+....+......+-...|. .|+..++-.-. ...|...|
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 6555566789999999987766666566655545553 45666543211 12455667
Q ss_pred cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecC-------cEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126 485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYA 556 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 556 (660)
+++|+.. . +.... .++..+.|+|....+++ |..| .|.+.+. .+.....+........+..=
T Consensus 175 l~tG~~~---~---v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 175 LKTGERK---V---VFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp TTT--EE---E---EEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEE
T ss_pred CCCCcee---E---EEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccc
Confidence 7775531 1 22222 47889999997776666 7543 3444454 23333333322223445556
Q ss_pred EEccCCCEEEEEe-----cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC------
Q 006126 557 TYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG------ 625 (660)
Q Consensus 557 ~~s~dg~~l~sg~-----~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg------ 625 (660)
-|.|||..|.--+ .+..|.-+|+.+++........ ++..+--++ ||.++|-=|.|.
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------------~~~H~~ss~-Dg~L~vGDG~d~p~~v~~ 310 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP------------WCSHFMSSP-DGKLFVGDGGDAPVDVAD 310 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------------SEEEEEE-T-TSSEEEEEE---------
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC------------ceeeeEEcC-CCCEEEecCCCCCccccc
Confidence 7899998766422 2446778899988765433211 122455567 788877655542
Q ss_pred ----------eEEEEeCCCCce
Q 006126 626 ----------RVHVIEPLESEV 637 (660)
Q Consensus 626 ----------~v~iw~~~~~~~ 637 (660)
-|+++++..++.
T Consensus 311 ~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 311 AGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp ----------EEEEEETTTTEE
T ss_pred cccceecCCcEEEEeccccCce
Confidence 566777776653
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.00095 Score=70.12 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred CceeeEeeccCCCeEEEEEeCCCCEEEEEe---CC-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG---AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 521 (660)
Q Consensus 446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 521 (660)
|.....+......+..-.|+|++..++..+ .. ..+.++|+.++.... +- ...+ .-...+|+|||+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~---i~-~~~g------~~~~P~fspDG~~ 251 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV---IL-NFNG------NNGAPAFSPDGSK 251 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---ee-ccCC------ccCCccCCCCCCE
Confidence 444444444455666678999998766543 22 358999999865321 11 1222 3346789999999
Q ss_pred EEEE--ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-C--eEEEEECCCCeeEEEeeccccc
Q 006126 522 LLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYA 594 (660)
Q Consensus 522 l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g--~I~iwd~~~~~~~~~~~~~~~~ 594 (660)
|+.+ .|+ .|+++|+..+...+ +... .+.-+.-.|+|||++++..+.. | .|++++.+.+.. ..+...
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~--- 324 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS--- 324 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---
Confidence 9984 454 58888997766433 4321 3333477899999999876653 4 477778777765 333321
Q ss_pred CCCCcCcccceEEEEEecCCCCEEEEEeCC-Ce--EEEEeCCCCc
Q 006126 595 QPGTISLELYPLVIAAHPLEPNRIALGLTN-GR--VHVIEPLESE 636 (660)
Q Consensus 595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~--v~iw~~~~~~ 636 (660)
+ .. -. .-.|+| ||++++..+.. |. |.+.++.++.
T Consensus 325 --~--~~-~~--~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 325 --G--GG-NS--NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred --C--CC-Cc--CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence 1 11 11 578999 89998887743 44 6667776655
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.035 Score=58.54 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=97.7
Q ss_pred EEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEE-------cCCCCCeEEEEEcCC
Q 006126 356 SQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQ 426 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~-------~~~~~~v~~v~~sp~ 426 (660)
+.+|+..+..+-+... .+ +.+.++.|+ ...|+... ||.+++||+. |+....+ .-....+....+..+
T Consensus 63 I~iys~sG~ll~~i~w--~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPW--DS-GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEECCCCCEeEEEEE--CC-CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 4566654443333222 13 789999999 66666555 9999999986 3331111 111122223344446
Q ss_pred C-eEEEEeCCCeEEEEeCCCCc-eeeEee---c-----cCC-CeEE-EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126 427 D-LFAFGFDDSSILVHCPCTKK-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 427 ~-~l~s~~~d~~I~iwd~~~~~-~~~~~~---~-----~~~-~v~~-l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 494 (660)
| .+++ .++.+.+..-.... ..+.+. + +.. .... ..++.+....+....++.+.+.+-....
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----- 211 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----- 211 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc-----
Confidence 6 4444 34444444322211 111111 0 000 0000 2244445555555555556544433310
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
.+ ..+ +++..|++||+|+++|. ..+|.+.+.+..-.+....+... .......+.|.-+
T Consensus 212 ~i----~~~----~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 212 QI----DSD----GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN 270 (410)
T ss_pred cc----cCC----CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence 11 111 47999999999999998 67899999887655555555442 2345667777654
No 355
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.73 E-value=0.012 Score=56.60 Aligned_cols=199 Identities=13% Similarity=0.027 Sum_probs=118.9
Q ss_pred EEEEEcCCCCC-eEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126 407 TLATFANPPPI-ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLC 481 (660)
Q Consensus 407 ~~~~~~~~~~~-v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~ 481 (660)
.+.++...... ...+.|..+| .+-+.+.-| .|+.+|+.+|+......-. ...--.++... ++...-.=.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 44444433333 3467787888 777777666 7999999999877655422 12222444443 33444445688999
Q ss_pred EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCC---CeEEEE
Q 006126 482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL---PITYAT 557 (660)
Q Consensus 482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~ 557 (660)
+||..+.+.+...... +.-..++ .|+..|+.+ ....++++|..+.+...++....... .++-+.
T Consensus 114 ~yd~~tl~~~~~~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEETTTTEEEEEEE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EEccccceEEEEEecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 9999986655443332 2334555 566677765 66789999999888877766543333 345566
Q ss_pred EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC----CCc---CcccceEEEEEecCCCCEEEEE
Q 006126 558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GTI---SLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~----gh~---~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
|- +|...|-.-....|...|..+|+....+......+. ... .+.. +.++|.|..+.+++||
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL--NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL--NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E--EEEEEETTTTEEEEEE
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee--EeEeEeCCCCEEEEEe
Confidence 64 666666555667899999999999998876543321 100 2223 4999999666666776
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00051 Score=72.71 Aligned_cols=203 Identities=13% Similarity=0.077 Sum_probs=120.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 375 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
+...|.--+++ +++++.|+ .|.+.+|+-..++....-. +....+.....+++. ++|.|+..|.|.++-+..+..-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44444444444 89999999 7999999988766543322 344455667788888 9999999999999988764321
Q ss_pred -----eEe-eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 450 -----AKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 450 -----~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
... ..|...|+++.|++|+..+.+|...|+|..-.+.+. .......+.+.... +.|..+... ..+|+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~d----s~IVQlD~~--q~~LL 184 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSED----SEIVQLDYL--QSYLL 184 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccC----cceEEeecc--cceeh
Confidence 111 237889999999999999999999999998888762 11111222122111 456555554 33444
Q ss_pred EEecCcEEEEeCCCCceeeeecCCCCCC-CeEEEEEccC-----CCEEEEEecCCeEEEEECCC-CeeEEE
Q 006126 524 SIHEGQIDVYEAPTLNHTSQLVPDKMDL-PITYATYSCD-----GKCIYVSCKSGHVKVFDTST-LELRCQ 587 (660)
Q Consensus 524 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~d-----g~~l~sg~~dg~I~iwd~~~-~~~~~~ 587 (660)
++.--.-.+++++.+. +..+-.....+ .-...+|-|. ...|+++ .-| .|+|..+- |+.+.+
T Consensus 185 VStl~r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG-~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 185 VSTLTRCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPG-LRLWEADFAGEVIKT 252 (726)
T ss_pred HhhhhhhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCC-CceEEeecceeEEEe
Confidence 4332333456665433 22221111111 1334566543 2345544 433 67787652 444433
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.70 E-value=0.037 Score=53.48 Aligned_cols=198 Identities=16% Similarity=0.093 Sum_probs=110.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126 374 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~ 447 (660)
+-...+..++|. .+.|++.. .+.|..++. +|+.++.+.-. ....-.+++..++ ++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 344569999999 56666666 578888886 48888887633 4567788998888 66666568999999884321
Q ss_pred ------eeeEee-----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC---Ceeeeceeeeeee--eccCCCCCCeE
Q 006126 448 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 511 (660)
Q Consensus 448 ------~~~~~~-----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~--~~~~~~~~~v~ 511 (660)
....+. .++..+-.++|+|.++.|+.+-...-..+|.++. ............. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 112221 2445688999999888888877776666776654 1111000000001 0111 3578
Q ss_pred EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 512 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 512 ~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
+++++|....+++ + .+..|..+| .+|+.+..+.... | -...-.++|+++|++.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999997655555 6 667899999 5788766654321 1 235778999999865544 467777765
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.045 Score=52.92 Aligned_cols=213 Identities=13% Similarity=0.035 Sum_probs=112.9
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126 410 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486 (660)
Q Consensus 410 ~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~ 486 (660)
.+.+-...+..++|+|+. ++++....+.|..++. +|+.++++.-. -+..-.|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455566679999999986 7777778889998996 47888777543 3567889998888777766568999999984
Q ss_pred CCee-eeceeeeee----eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCC---Cceeee-----ec-CCCCCC
Q 006126 487 GWKK-LCSKFLHSF----QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQ-----LV-PDKMDL 551 (660)
Q Consensus 487 ~~~~-~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~---~~~~~~-----~~-~~~~~~ 551 (660)
.... ......+.+ ...+. ..+-.++|+|.+..|++. ...-..+|.+.. ...+.. +. ......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N---~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGN---KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---S---S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCC---cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 4221 111111111 11122 468899999987777775 444445555432 111111 11 011245
Q ss_pred CeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 552 PITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 552 ~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
.+.+++++|.. ++++.+..+..|.++| .+|+.+..+...... .|-...--..-.|+|.| +|++.++. +.+..+++
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~-~gl~~~~~QpEGIa~d~-~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF-HGLSKDIPQPEGIAFDP-DGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG-GG-SS---SEEEEEE-T-T--EEEEE-TTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc-cCcccccCCccEEEECC-CCCEEEEc-CCceEEEe
Confidence 67889999864 5666677778899999 678877776643210 00000001133799999 78665554 66655554
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.13 Score=53.97 Aligned_cols=198 Identities=16% Similarity=0.115 Sum_probs=136.3
Q ss_pred eEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeee
Q 006126 418 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLC 492 (660)
Q Consensus 418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~ 492 (660)
-..++.++.+ ..+....+..|.+.|..+.+..+...-- .....++++|+++.+..+.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 3577888888 4555556789999998777766655422 26678899999988777665 6889999988854332
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCceeeeecC---CCCCCCeEEEEEccCCCEEEE
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~dg~~l~s 567 (660)
. .+.+.. + ..++++|+|..+++. .++.|.+.|.......+ -.. -.-......+.++|+|.+++.
T Consensus 155 ~-----~~vG~~----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 155 T-----IPVGNT----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred E-----EecCCC----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 2 333322 2 789999999988874 68999999986655543 110 011344567899999997776
Q ss_pred EecC---CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCce
Q 006126 568 SCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLESEV 637 (660)
Q Consensus 568 g~~d---g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~~~~~~ 637 (660)
.... +.+...|..++......... ... ....+..+| +|..+.+... .+.|.+-|-.+...
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCce
Confidence 5554 58999999998876652211 111 233688999 7888777644 47888888877654
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.57 E-value=0.01 Score=60.77 Aligned_cols=181 Identities=15% Similarity=0.086 Sum_probs=107.8
Q ss_pred CeEEEEeCCCCceeeEeec-cCCCeEEEE---EeCC----CCEEEEEeC----------CCcEEEEEcCCCeeeeceeee
Q 006126 436 SSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 436 ~~I~iwd~~~~~~~~~~~~-~~~~v~~l~---~sp~----~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~ 497 (660)
..|++.|..+.+.+..+.- ....+.++. +..+ ..++++|+. .|.|.++++..... ....+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEE
Confidence 3678888888877765543 223344443 3322 456776653 28899999988400 001111
Q ss_pred eee-eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCc-eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 498 SFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 498 ~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
.+. .... ++|++++-- ++ +++++.++.|.+|++...+ ....-..+ ....+.++... +++++.|.....|.
T Consensus 81 ~i~~~~~~---g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 81 LIHSTEVK---GPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEEES---S-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEEEeec---CcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCEE
Confidence 111 1112 688888877 34 4777888999999998777 43333221 23455555544 67999998888888
Q ss_pred EEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 576 VFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 576 iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
++..+. +..+..+... ..+.+++++.|-+ +++.++.+..+|.|.++....
T Consensus 153 ~~~~~~~~~~l~~va~d--------~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARD--------YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEE--------SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEec--------CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 775443 2222232211 3356677899987 557999999999999998863
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.57 E-value=0.03 Score=58.31 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=114.0
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc-------------------------------------------eeeEe
Q 006126 417 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL 452 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~-------------------------------------------~~~~~ 452 (660)
.|+.+.|.++. .|++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788888888 88889889988887532110 01112
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee-eeccCCCCCCeEEEEEec-----CC---cEEE
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHP-----DQ---IHLL 523 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp-----~~---~~l~ 523 (660)
....++|++++.+.-| +++.|..+|.+.|.|+|....+....+... ...... ..++++.|+. |+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~--~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS--SYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS------EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccc--cCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999987544 999999999999999999877665555420 111111 5688888863 33 3455
Q ss_pred EE-ecCcEEEEeCC--C-CceeeeecC--CCCCCCeEEEE-EccCC--------------------CEEEEEecCCeEEE
Q 006126 524 SI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCDG--------------------KCIYVSCKSGHVKV 576 (660)
Q Consensus 524 ~~-~d~~i~iwd~~--~-~~~~~~~~~--~~~~~~v~~~~-~s~dg--------------------~~l~sg~~dg~I~i 576 (660)
+| ..|.+.+|.+. . +.....+.. ..+..+|..+. |+.+. +-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 55 66899888764 1 211111111 12355555554 43221 12344445678999
Q ss_pred EECCCCeeEEEeecccccCCCCcCcccceEEEEE-----ecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 577 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-----HPLEPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 577 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~-----sp~d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
+...+.+...... +....+..+.+ .. .+..|++-..||.|+++.+..-+..
T Consensus 240 ~~~~~~k~~~K~~----------~~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 240 FKPPKSKGAHKSF----------DDPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp E-TT---EEEEE-----------SS-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT--EE
T ss_pred EeCCCCcccceee----------ccccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCchHh
Confidence 9998887665543 11122223333 22 4567888899999999999887764
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.022 Score=54.23 Aligned_cols=217 Identities=13% Similarity=0.047 Sum_probs=128.2
Q ss_pred cEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCC-eEEEEeCC-----CeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC
Q 006126 396 KISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDD-----SSILVHCPCTK-KTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v--~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp 466 (660)
...++|..+.+...++......- -.=.||||| +|...-.| |.|-|||.+.+ +.+..+..|.-....+.|.+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~ 171 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA 171 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence 45678887776665554322211 123699999 66655443 58999998754 45667788888888999999
Q ss_pred CCCEEEEEeC------------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126 467 SLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 527 (660)
Q Consensus 467 ~~~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d 527 (660)
||+.++.+.. .-++.+.|..+|..+.+..+. ...+. -.|..++..+||+.++.+ ..
T Consensus 172 DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp--~~l~~---lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 172 DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP--ASLRQ---LSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc--hhhhh---cceeeeeeCCCCcEEEEEEee
Confidence 9999887542 123455665666554443332 11122 368888888888877764 22
Q ss_pred Cc-----EEEEeCCCCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCC
Q 006126 528 GQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQP 596 (660)
Q Consensus 528 ~~-----i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~ 596 (660)
|. --+=-...++++.-+.... ....|-+++.+.+..+++..+- .+...+||..+|..+..-...
T Consensus 247 G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----- 321 (366)
T COG3490 247 GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----- 321 (366)
T ss_pred CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----
Confidence 21 1111122344433332211 1355777888765555555444 456778999999987664432
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
+ +..|+- ...=++..+.+|.+.++.-
T Consensus 322 ---d----aaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 322 ---D----AAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred ---c----ccccee---ccCceEEecCCceEEeccc
Confidence 1 112322 2333555567888888743
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.04 Score=57.68 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=139.1
Q ss_pred EEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC---CCeEEEEeCCCCceeeE
Q 006126 380 SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK 451 (660)
Q Consensus 380 ~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~---d~~I~iwd~~~~~~~~~ 451 (660)
..++.+ +..+.... ++.|.+.|..+.+......... .-..++++|++ .+..+.. ++++.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 345555 55444444 6899999988777776665332 44578999999 5544443 78999999999888877
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE- 527 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d- 527 (660)
...-..+ ..++++|+|..++... .++.|.+.|..+..............+ .....+.++|+|.++.+. .+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence 5433334 8899999999766555 788999999777433210000001111 245679999999988773 22
Q ss_pred -CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-CeEEEEECCCCeeEEEeec
Q 006126 528 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 528 -~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~~~~~~~~~~~ 590 (660)
+.+...|..++.....-...... ....+.++|+|+++++.... +.+.+.|..+.........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 58999999888776652221112 56678999999999988554 8899999999887776553
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.54 E-value=0.011 Score=60.62 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=75.5
Q ss_pred CCCCeEEEEEeCCEEEEEeCCcEEEEECCCCe-EEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-CceeeE
Q 006126 375 PKDSISCFALRGSHLFSASGGKISIFSLETFQ-TLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAK 451 (660)
Q Consensus 375 h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~-~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~~~~ 451 (660)
..++|++++-.+++|+.+.++.|.+|++...+ ....-. .....+.++....+ ++++|.....+.++..+. +..+..
T Consensus 87 ~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 87 VKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp ESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEE
T ss_pred ecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEE
Confidence 56789998888666888889999999998877 443322 22335666665533 888898888777764432 232333
Q ss_pred eec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126 452 LKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 452 ~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~ 487 (660)
+.. ....++++.|-++++.++.+..+|.+.++....
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 322 345688888987777999999999999998863
No 365
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.51 E-value=0.00014 Score=53.17 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=39.8
Q ss_pred cHHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHHhhhcc
Q 006126 97 DINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQ 149 (660)
Q Consensus 97 ~~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lell~~~e 149 (660)
+...++++|++|+|++|++.+...........+...|. |++|+|+|+++.+.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~-L~~q~~lell~~~~ 55 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQGK 55 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhH-HHHHHHHHHHHcCC
Confidence 36789999999999999999987744332333444555 99999999998763
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.11 Score=51.78 Aligned_cols=230 Identities=13% Similarity=0.019 Sum_probs=127.7
Q ss_pred cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEE
Q 006126 321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKIS 398 (660)
Q Consensus 321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~ 398 (660)
..++.|+.|+.+| +.+++...... .... .+...|..+... -+.+++-+|+.+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~~~i----~~~~~I~ql~vl~~~~~llvLsd~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------PTRI----LKLSSITQLSVLPELNLLLVLSDGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------ceeE----eecceEEEEEEecccCEEEEEcCCccE
Confidence 3577899998888 77777621111 0100 133347777777 5667777789999
Q ss_pred EEECCCCeEEEEE--------------cCCCCCeEEEE--EcCCC-eEEEEeCCCeEEEEeCCCC-----ceeeEeeccC
Q 006126 399 IFSLETFQTLATF--------------ANPPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTK-----KTKAKLKGHQ 456 (660)
Q Consensus 399 iwd~~~~~~~~~~--------------~~~~~~v~~v~--~sp~~-~l~s~~~d~~I~iwd~~~~-----~~~~~~~~~~ 456 (660)
++++......... ......+..++ -...+ ..++....+.|.+|..... +..+.+. -.
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cC
Confidence 9998764433311 12223444444 12333 3444444558888776542 3444444 45
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-----eccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-----TGLVPETTIVNHIQFHPDQIHLLSIHEGQID 531 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~ 531 (660)
..+.++.|. ++.++.|..+ ...+.|+.++....-....... .... .....+---+++.+|++ .+..-.
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~Ll~-~~~~g~ 211 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSS---SKPLGIFQLSDNEFLLC-YDNIGV 211 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccC---CCceEEEEeCCceEEEE-ecceEE
Confidence 778899998 5567777644 5778899875432111111000 0001 11222333334555554 344344
Q ss_pred EEeCCCCceee--eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 532 VYEAPTLNHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 532 iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
+.|. .|+..+ .+.. ...+.++++. ..||++.+. +.|.||++.++++++.+..
T Consensus 212 fv~~-~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 212 FVNK-NGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcC-CCCcCcccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 4454 454433 2322 4455566663 457777665 5599999999999998873
No 367
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.48 E-value=0.13 Score=51.21 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=122.9
Q ss_pred CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe----------
Q 006126 386 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 452 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---------- 452 (660)
++.|+.|. +| +.+++... ....+... ...|..+...|+- .+++-+ |+.++++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77888888 56 99999833 33333322 2238899988876 444443 599999998754333210
Q ss_pred ----eccCCCeEEEE--EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe
Q 006126 453 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 526 (660)
Q Consensus 453 ----~~~~~~v~~l~--~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 526 (660)
......+..++ -.+.+...++.....+|.+|.............+.+.-. ..+.+++|. +..++++.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01222344433 112344444455566888888766311100111211111 578899999 66777777
Q ss_pred cCcEEEEeCCCCceeeeecCCCC----------CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE--Eeeccccc
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA 594 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~~ 594 (660)
.+...+.|+.++.....+..... ..++..+.. +++.+|++- |..-.+.|. .|+... .+.-.
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~--- 228 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS--- 228 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcC---
Confidence 77899999987766444322111 123333333 345666653 332333343 343332 22110
Q ss_pred CCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 595 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
. .+..+++.. .+|+..+. +.|-||++.+++...
T Consensus 229 -----~---~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 229 -----S---APQSVAYSS---PYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred -----C---chhEEEEEC---CEEEEECC-CEEEEEECcCCcEEE
Confidence 1 123566543 47777665 459999999997643
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.028 Score=61.86 Aligned_cols=202 Identities=12% Similarity=0.066 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCC-eEEEEe------CCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc-EEE---
Q 006126 416 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCV--- 482 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~------~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~-i~v--- 482 (660)
..+.+.+++|+| .++... .|. .|.+++.. +.......+ ...+.-.|+|+|+.+++.+.... +++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 456788999999 554443 233 56666653 333222232 23778899999988877753312 222
Q ss_pred --------EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEE---EeCCCCce-e---eeecCC
Q 006126 483 --------WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPD 547 (660)
Q Consensus 483 --------wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~i---wd~~~~~~-~---~~~~~~ 547 (660)
.++..++... ... +.|..+.|||||..++...++.|++ -....|.. + ..+..
T Consensus 427 ~~~gql~~~~vd~ge~~~---------~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~- 493 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---------RVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP- 493 (591)
T ss_pred CCCceEEEEeccCchhhh---------ccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence 2333221100 111 5799999999999999855678777 44444541 1 11211
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 626 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~ 626 (660)
.-...+.++.|..++.++ ++..++.-.+|.+.- |.....+.. +....+ +..++-+| + .+.....+|.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~------~n~~~~--v~~vaa~~-~--~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS------RNLSAP--VVAVAASP-S--TVYVTDARAV 561 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCC------CCccCc--eEEEecCC-c--eEEEEcCCce
Confidence 113446889999999855 555544444444332 221111111 100112 33666655 2 3444456664
Q ss_pred EEEEeCCCCceeccCCCCc
Q 006126 627 VHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 627 v~iw~~~~~~~~w~~~~~~ 645 (660)
+.+=.-.+....|...+..
T Consensus 562 ~~l~~~~~~~~~W~ev~~l 580 (591)
T PRK13616 562 LQLPNSDSGDQYWREVPGL 580 (591)
T ss_pred EEecCCCCCCCCceECccc
Confidence 4443333344577765554
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.38 E-value=0.2 Score=53.35 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=122.9
Q ss_pred eEEEEEecCCCEEEEE-ECCC----cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 314 VVRLIYSHSGDFLVAL-TQTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 314 V~~~~~spdg~~l~s~-s~dg----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+....+||||+++|.+ +..| .++++|+.+++. +...+ .......+.|. +
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---------------------l~d~i---~~~~~~~~~W~~d~ 181 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---------------------LPDGI---ENPKFSSVSWSDDG 181 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---------------------EEEEE---EEEESEEEEECTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---------------------cCCcc---cccccceEEEeCCC
Confidence 3467899999988865 3333 366666555533 22111 01111237777 4
Q ss_pred CEEEEEe-CC-----------cEEEEECCCCeE--EEEEcCCCCC--eEEEEEcCCC-eEE-EEeCC---CeEEEEeCCC
Q 006126 387 SHLFSAS-GG-----------KISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFA-FGFDD---SSILVHCPCT 445 (660)
Q Consensus 387 ~~l~s~~-dg-----------~I~iwd~~~~~~--~~~~~~~~~~--v~~v~~sp~~-~l~-s~~~d---~~I~iwd~~~ 445 (660)
+.|+... +. .|..|.+.+... ...+...... ...+..++|+ +++ ..... ..+++.|+..
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 5554444 32 378888876543 2445443333 5678899999 444 33332 3588888876
Q ss_pred C----ceeeEeeccCCCe-EEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 446 K----KTKAKLKGHQNRI-TCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 446 ~----~~~~~~~~~~~~v-~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
+ .....+......+ ..+... .+.+++.... .+.|...++.......... ....+.. ...+..+..
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~---~l~~~~~-~~~l~~~~~-- 334 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWT---VLIPEDE-DVSLEDVSL-- 334 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE---EEE--SS-SEEEEEEEE--
T ss_pred cCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccccee---EEcCCCC-ceeEEEEEE--
Confidence 4 2233333333333 334333 4444444332 3567777887754211111 1222220 013444444
Q ss_pred CCcEEEE-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCeeEE
Q 006126 518 DQIHLLS-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRC 586 (660)
Q Consensus 518 ~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~~~~ 586 (660)
.+.+|+. . .+ ..|+++|+..+.....+.... .+.|..+...++++.+..... -+.++.||+.+++...
T Consensus 335 ~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 335 FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 4556665 3 34 369999997355544544432 455666666666665443222 3789999999987543
No 370
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.38 E-value=0.38 Score=53.83 Aligned_cols=316 Identities=12% Similarity=0.040 Sum_probs=163.3
Q ss_pred EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeecccee
Q 006126 276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 355 (660)
Q Consensus 276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~ 355 (660)
+++.|.++..+.+--.-.. ........++...-...|.-..|-.|+.||.++..||.+.-+.+......
T Consensus 550 ~~aVG~Ws~~~~~l~~~pd--~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~--------- 618 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLPD--LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQ--------- 618 (1096)
T ss_pred EEEEEeecceEEEEEECCC--cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccce---------
Confidence 7888888877655433210 11111111322223445666777778899999999999887654433221
Q ss_pred EEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eE
Q 006126 356 SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF 429 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l 429 (660)
.-|.+ +.. -...++.--.|+ ...+++++|.-..+|.-+..-+...+.. ..--..+.|+.+. .+
T Consensus 619 --lsd~K-----k~~---lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~-kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 619 --LSDRK-----KVT---LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL-KEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred --Ecccc-----ccc---cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch-HHhhhhcccccccCCceE
Confidence 11111 000 123444444555 5667777777666776543222211110 0001122344333 34
Q ss_pred EEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCC--------------CcEEEEEcCCCeeeec
Q 006126 430 AFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWKKLCS 493 (660)
Q Consensus 430 ~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--------------g~i~vwd~~~~~~~~~ 493 (660)
+++. .+.+++..+..-+. ++++. -......+++.+....+.+.+.- ..++++|-++.+....
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~ 765 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS 765 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence 4443 34455554443222 23332 22345556666643333333221 1377788877554443
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecC-CcEEEEEe-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
......... ..+.++.|..| +.++++|. .|.|.++.+..++.++......-.+.+.++.. -+
T Consensus 766 hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fn 839 (1096)
T KOG1897|consen 766 HEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FN 839 (1096)
T ss_pred cccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hC
Confidence 333311111 24566668877 66776641 36788888877444444422122455555543 36
Q ss_pred CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
|+++|.- +..|++|+..+.+.+..-. ++ ..++. .+...- .++.++.|.--+.+.+-....
T Consensus 840 gkllA~I--n~~vrLye~t~~~eLr~e~-------~~-~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTTERELRIEC-------NI-SNPII--ALDLQV-KGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred CeEEEec--CcEEEEEEccccceehhhh-------cc-cCCeE--EEEEEe-cCcEEEEeeccceEEEEEEec
Confidence 7777654 5689999999885444322 11 23344 444444 788999998888776654443
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.14 Score=51.38 Aligned_cols=204 Identities=18% Similarity=0.092 Sum_probs=114.2
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee----c-cCCCeEEEEEeCC
Q 006126 394 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNRITCLAYSLS 467 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~----~-~~~~v~~l~~sp~ 467 (660)
.+.|.-|+..+++.. .+.. ...+.++.....+ .|+++.. -+.+++.+++..+..+. + .....+.+...|+
T Consensus 46 ~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 46 GGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 577888888765432 2222 2223344443344 5555533 34566666555433321 1 1245667888999
Q ss_pred CCEEEEEeC-----------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEe
Q 006126 468 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 534 (660)
Q Consensus 468 ~~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd 534 (660)
|.+.+.... -|.++.+|. .+.. .. ...++- ..-+.++||||++.++.+ ..+.|+-|+
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~-----~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV-----VR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcC-CCCE-----EE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 987665433 123444443 2211 11 222222 345689999999988875 557888887
Q ss_pred CCC--Cce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 535 APT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 535 ~~~--~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
+.. +.. ...+......+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+. .++.++
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~----------~~~t~~ 260 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV----------KRPTNP 260 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC----------CCCccc
Confidence 752 111 11111111245566788888999887665554 89999999 88888887531 224466
Q ss_pred EEecCCCCEEEEEe
Q 006126 609 AAHPLEPNRIALGL 622 (660)
Q Consensus 609 ~~sp~d~~~l~s~s 622 (660)
+|--.+.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 77543455544433
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.076 Score=50.76 Aligned_cols=211 Identities=15% Similarity=0.040 Sum_probs=124.9
Q ss_pred EEEEEcCCC--eEEEEeCCC-eEEEEeCCCCceeeEeeccCCC--eEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 006126 419 TYFILLPQD--LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNR--ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 488 (660)
Q Consensus 419 ~~v~~sp~~--~l~s~~~d~-~I~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~ 488 (660)
..++++|.- -++.+-.-| ...++|..+.+...++...++. .-.=.|||||.+|...-.| |.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 367888876 555565555 4678998888766655332211 1122599999999876443 67999999863
Q ss_pred eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEec-------------------CcEEEEeCCCCceeeeecCC--
Q 006126 489 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-------------------GQIDVYEAPTLNHTSQLVPD-- 547 (660)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d-------------------~~i~iwd~~~~~~~~~~~~~-- 547 (660)
- ..+- -...|. -....+.+.+||+.+++... -++.+.|..+|..+.+....
T Consensus 151 f----qrvg-E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 151 F----QRVG-EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred c----ceec-ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 2 1111 122333 34567999999999987322 13566676677766554433
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCe-----EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~-----I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.+.-.|..++..+||..++.+-..|. -.+=....++.+..+....-.-. .-.-|+-+++.+-.++...+|+=
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecC
Confidence 45678889999999987765543321 11112233444443332100000 00123447888775555555555
Q ss_pred CCCeEEEEeCCCCceecc
Q 006126 623 TNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 623 ~Dg~v~iw~~~~~~~~w~ 640 (660)
..+...|||..+|...-.
T Consensus 300 ~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 300 RGNRAVIWDAATGAVVSE 317 (366)
T ss_pred CCCeEEEEEcCCCcEEec
Confidence 666788999999986443
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.24 E-value=0.008 Score=66.99 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=95.1
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcC-----CC-eEEEEeCCCeEEEEeCCCCc--eeeE-ee--ccCCCeEE
Q 006126 394 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC 461 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~-v~~v~~sp-----~~-~l~s~~~d~~I~iwd~~~~~--~~~~-~~--~~~~~v~~ 461 (660)
...|+-.|+++|+.+..+..+... |..++-.. +. ..+.|-.+..+..||++-.. ++.. .. ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999877654 55444321 13 56788889999999988532 2211 11 13456778
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 535 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~ 535 (660)
++-+.+| ++|+|+.+|.||+||-- |. ..++.+.+-. .+|..|..+.||+++++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~-g~-----~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRL-GK-----RAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeeccc-ch-----hhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8777776 78899999999999943 21 1232333433 6899999999999999987888888885
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0019 Score=67.64 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=76.0
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
...+.-+.|+|.- .||.+..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456778999998 99999999999999887 777888887777777 99999999999999999999999999976554
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEec
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
..... .. ..|.++.|.+
T Consensus 99 ~~~~s-----~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VE---TDISKGIWDR 115 (665)
T ss_pred ccccc-----cc---cchheeeccc
Confidence 43221 11 4677787874
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.09 E-value=0.0015 Score=42.01 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.3
Q ss_pred CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
++....+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 376
>PHA02713 hypothetical protein; Provisional
Probab=97.07 E-value=0.051 Score=59.92 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=99.8
Q ss_pred CC-eEEEEeCC------CeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeee
Q 006126 426 QD-LFAFGFDD------SSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKL 491 (660)
Q Consensus 426 ~~-~l~s~~~d------~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~ 491 (660)
++ .++.||.+ ..+..||+.+..-.. .+....... ++ ..-+|+..+.|+.++ ++..||..+.+=
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W- 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKW- 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EEECCEEEEECCcCCCCCCceEEEEECCCCeE-
Confidence 55 66677753 357888987764321 111111111 22 223677778888764 478899876431
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-----------------------CcEEEEeCCCCceeeeecCC
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~ 547 (660)
..+..+..... .. +++ .-+|+..+.| .+ ..+..||..+.+-...-...
T Consensus 380 --~~~~~mp~~r~----~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 380 --KMLPDMPIALS----SY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred --EECCCCCcccc----cc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 11111111111 11 111 2246655554 32 24778888766542211110
Q ss_pred CCCCCeEEEEEccCCCEEEEEecC------CeEEEEECCC-CeeE--EEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LELR--CQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 618 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~d------g~I~iwd~~~-~~~~--~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 618 (660)
.......+..-+|+..+.|+.+ ..+..||..+ .+-. ..++.. ..... .++. ++.+.
T Consensus 452 --~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--------r~~~~--~~~~---~~~iy 516 (557)
T PHA02713 452 --TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--------LSALH--TILH---DNTIM 516 (557)
T ss_pred --cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--------cccce--eEEE---CCEEE
Confidence 1111111223356766777654 2467899887 4322 222110 11111 2222 67899
Q ss_pred EEEeCCC--eEEEEeCCCCceeccCCCCcccccc
Q 006126 619 ALGLTNG--RVHVIEPLESEVEWGKLPFTDSREF 650 (660)
Q Consensus 619 ~s~s~Dg--~v~iw~~~~~~~~w~~~~~~~~~~~ 650 (660)
++||.|| ++-.||+.+ .+|...+|.-+..+
T Consensus 517 v~Gg~~~~~~~e~yd~~~--~~W~~~~~~~~~~~ 548 (557)
T PHA02713 517 MLHCYESYMLQDTFNVYT--YEWNHICHQHSNSY 548 (557)
T ss_pred EEeeecceeehhhcCccc--ccccchhhhcCCce
Confidence 9999998 677777755 57988888765543
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.034 Score=57.48 Aligned_cols=137 Identities=15% Similarity=0.211 Sum_probs=97.0
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC---eE-----EEEeCCCeEEEEeCCCCc--eeeEeecc--
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF-----AFGFDDSSILVHCPCTKK--TKAKLKGH-- 455 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~l-----~s~~~d~~I~iwd~~~~~--~~~~~~~~-- 455 (660)
|.++. ...++-.|++.|+.+....-+.. |+-+.+.|+. .+ +.|-.|..|.-||++-.. .+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33444 56788899999999999887666 7777888876 33 457788899999987422 22222232
Q ss_pred --CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 006126 456 --QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 533 (660)
Q Consensus 456 --~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iw 533 (660)
.....|++-..+| ++++||.+|.|++||- .+ ...++.+.+-. .+|..+..+.+|++|++..+..+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~-----~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IG-----RRAKTALPGLG---DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hh-----hhhhhcccccC---CceeeEEeeccCcEEEEecccEEEEE
Confidence 2345666666565 7889999999999997 32 22222344444 68999999999999999777888777
Q ss_pred eCC
Q 006126 534 EAP 536 (660)
Q Consensus 534 d~~ 536 (660)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.06 E-value=0.013 Score=65.50 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=97.0
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEeeccCCC-eEEEEEeCC-------CCEEEEEeCCCcEEEEEcCCCe-eeeceeeeee
Q 006126 429 FAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLS-------LNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSF 499 (660)
Q Consensus 429 l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~-------~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~ 499 (660)
|........++-.|++.|+.+..+..|... |.. +.|+ ....+.|-.+..+..||.|-.. .+.....+..
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 333345678999999999999999887644 554 4443 2345667788999999998632 1110111101
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
... ...+|++-+.+|...+.+.+|.||+||- .|+.-++..+ .-+.+|.++..+.||+||++.+. ..+.+++.
T Consensus 575 --~~~---~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 575 --SSK---NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred --ccC---CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 111 4678898898997777789999999994 4544444433 24799999999999999987764 56667764
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.98 E-value=0.55 Score=49.95 Aligned_cols=199 Identities=11% Similarity=0.018 Sum_probs=107.8
Q ss_pred EEEEcCCC-eEEEE-eCCC----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----------cEEE
Q 006126 420 YFILLPQD-LFAFG-FDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----------QLCV 482 (660)
Q Consensus 420 ~v~~sp~~-~l~s~-~~d~----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----------~i~v 482 (660)
...++|+| +++.+ +..| .++++|+.+|+.+...-.. .....+.|.++++.|+....+. .|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 56789999 55543 4444 6999999999776532111 1122389999998887766443 2777
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCC-eEEEEEecCCcEEEE-E---ec-CcEEEEeCCCC----ceeeeecCCCCCCC
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLS-I---HE-GQIDVYEAPTL----NHTSQLVPDKMDLP 552 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~-~---~d-~~i~iwd~~~~----~~~~~~~~~~~~~~ 552 (660)
|.+.+..... ..++.+..+ .. ...+..++|+++++. + .+ ..+++.|+..+ .....+... ..+.
T Consensus 207 ~~~gt~~~~d----~lvfe~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~ 279 (414)
T PF02897_consen 207 HKLGTPQSED----ELVFEEPDE--PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGV 279 (414)
T ss_dssp EETTS-GGG-----EEEEC-TTC--TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-
T ss_pred EECCCChHhC----eeEEeecCC--CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCce
Confidence 8877643211 113333332 23 678899999999886 3 33 56899999875 222333221 1333
Q ss_pred eEEEEEccCCCEEEEEec---CCeEEEEECCCCee---EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC-
Q 006126 553 ITYATYSCDGKCIYVSCK---SGHVKVFDTSTLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG- 625 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~~---dg~I~iwd~~~~~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg- 625 (660)
...+... .+.+++.... ++.|.-.++.+... ...+..+ ...+.+..+... .+.+++....++
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~--------~~~~~l~~~~~~--~~~Lvl~~~~~~~ 348 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE--------DEDVSLEDVSLF--KDYLVLSYRENGS 348 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----------SSSEEEEEEEEE--TTEEEEEEEETTE
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC--------CCceeEEEEEEE--CCEEEEEEEECCc
Confidence 3334333 3434443322 36777788877653 2233221 222333344432 234555555555
Q ss_pred -eEEEEeCCCCce
Q 006126 626 -RVHVIEPLESEV 637 (660)
Q Consensus 626 -~v~iw~~~~~~~ 637 (660)
.|+++++..+..
T Consensus 349 ~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 349 SRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEEEETT-TEE
T ss_pred cEEEEEECCCCcE
Confidence 588899983333
No 380
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.029 Score=57.96 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=100.0
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE-------EEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-------l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
++.++..-..++-.|++.|+.+..++-+.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... ..+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~---~kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK---NKLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc---ceee-ee
Confidence 556666667899999999999999987766 777788886542 23466788999999985221 1111 22
Q ss_pred eccCCC-CCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 501 TGLVPE-TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 501 ~~~~~~-~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
.+|.-. .....|.+-..+|..++.|.+|.|++||- .+...++..+ +-..+|..+..+.||++|++.+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222100 03456777777887666689999999997 5555445444 2488999999999999998765 455666554
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.90 E-value=0.45 Score=45.93 Aligned_cols=185 Identities=15% Similarity=0.155 Sum_probs=111.5
Q ss_pred CeEEEEE-e-CCEEEEEe-C--CcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeE
Q 006126 378 SISCFAL-R-GSHLFSAS-G--GKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 378 ~v~~v~~-s-~~~l~s~~-d--g~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
-...+.| . |.++-+.+ - ..|+.+|+.+|+..+...-.. .---.++...|....-.-.++...+||..+-+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 3457778 4 45555555 3 489999999999877655332 222344454443444445788999999999988888
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 530 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i 530 (660)
+. ..+.=+.++ .|++.|+.......++.+|..+.+......+. ..+.. ...++.+.+. +|...|-- ....|
T Consensus 126 ~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 126 FP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTSSEE
T ss_pred Ee-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 76 344556665 46777877777889999999886654433333 11111 1356677776 55544434 66788
Q ss_pred EEEeCCCCceeeeecCC----------C---CCCCeEEEEEccCCCEEEEEec
Q 006126 531 DVYEAPTLNHTSQLVPD----------K---MDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~----------~---~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
...|..+|+.+..+... . .....+.++++|..+.++..+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 89999999887654210 0 1356789999987765554443
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.83 E-value=0.1 Score=57.57 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=99.7
Q ss_pred CCeEEEEEe--CCEEEEEe-------CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 006126 377 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 435 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~-------dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d--------- 435 (660)
..+...+++ |+.++... |. .|.+++.. +.. +.+... ...+.-.|+||| .+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356677777 66655443 33 45555642 222 333222 237788999997 66555432
Q ss_pred ---CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE---EEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 436 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 436 ---~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
+.+.+.++..+.... ...+.|..+.|+|||.+++... ++.|.+ -....|...-..+.. +..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence 233333444433322 2356799999999999988766 577776 443444311111111 222222 23
Q ss_pred eEEEEEecCCcEEEEEec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 510 VNHIQFHPDQIHLLSIHE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 510 v~~~~~sp~~~~l~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
+.++.|.+++.+++...+ ..++..++. |.....+.......++..++=+++ -++....+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 678999999996654433 335444553 333222222223566777776653 455555566443
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.29 Score=45.56 Aligned_cols=149 Identities=9% Similarity=0.019 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCeEEEEeCC----------CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEE
Q 006126 416 PIATYFILLPQDLFAFGFDD----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWD 484 (660)
Q Consensus 416 ~~v~~v~~sp~~~l~s~~~d----------~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd 484 (660)
...+.-..+|+|.+..|... |.++.|-.. ..+..+...-+--+.++|+.+.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 34556677899933444422 234444321 12222222223345788988776655 445567787787
Q ss_pred --cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-c
Q 006126 485 --AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-C 560 (660)
Q Consensus 485 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~ 560 (660)
..+|.......+-.+.......+-..-.++...+|.+.++. ..++|...|..+|+.+..+... ...|+++||. +
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence 66665444333322222100000123346667788887776 7789999999999999998774 7889999996 4
Q ss_pred CCCEEEEE
Q 006126 561 DGKCIYVS 568 (660)
Q Consensus 561 dg~~l~sg 568 (660)
+-..+++.
T Consensus 265 n~d~~yvT 272 (310)
T KOG4499|consen 265 NLDILYVT 272 (310)
T ss_pred CccEEEEE
Confidence 44455543
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.78 E-value=0.064 Score=44.07 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=62.7
Q ss_pred eEEEEEec---CC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126 314 VVRLIYSH---SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 388 (660)
Q Consensus 314 V~~~~~sp---dg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~ 388 (660)
|.++++.. || +.|++||.|..|++|+-+.- ++. . .-.+.|.+++-. +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------------~~E---------i---~e~~~v~~L~~~~~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------------VAE---------I---TETDKVTSLCSLGGGR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------------EEE---------E---ecccceEEEEEcCCCE
Confidence 55666554 33 57999999999999874321 111 1 244667777777 777
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE---cCCC--eEEEEeCCCeEE
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSIL 439 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~---sp~~--~l~s~~~d~~I~ 439 (660)
++.+- +|+|-+|+-. ..+...+.... +.++.+ ..|| .|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88887 8999999753 33444443333 444443 3455 889998888764
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.75 E-value=0.21 Score=56.67 Aligned_cols=231 Identities=9% Similarity=-0.039 Sum_probs=124.0
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC--------eEEEEEc----------------CCC-eEEEEeCCCeEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL 439 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~--------v~~v~~s----------------p~~-~l~s~~~d~~I~ 439 (660)
++.++.++ ++.|.-.|..+|+.+..+...... .+.+++. .++ .++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66777777 899999999999998887633211 1122221 123 788899999999
Q ss_pred EEeCCCCceeeEeeccCCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEEcCCCeeeece
Q 006126 440 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~-------------~l~~sp--~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~ 494 (660)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876632 22111 111122 2345666643 688999999998765433
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
... .. ..... -+.+.....+ .+ -...-+|.+++....-. + ... ..+....+........+
T Consensus 353 ~~g-----~p----~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-G--n~~----pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 353 DPG-----NP----DPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM-G--NQT----PDQWGGDRTPADEKYSS 414 (764)
T ss_pred ecC-----CC----CcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC-C--Ccc----ccccCCccccCcccccc
Confidence 221 00 00000 0122222211 11 12334444433321111 0 000 00100000000111246
Q ss_pred eEEEEECCCCeeEEEeecccccCCCCcCccc-----ceEEEEEecCCCC---EEEEEeCCCeEEEEeCCCCceeccC
Q 006126 573 HVKVFDTSTLELRCQINLTAYAQPGTISLEL-----YPLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v-----~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~~~~~~~~w~~ 641 (660)
.|.-.|.++|+....+... |++..- ..+-+.+.-.+|+ .++.++.+|.+++.|-.+|+..|..
T Consensus 415 slvALD~~TGk~~W~~Q~~------~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTV------HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEeccc------CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 6778899999988887642 111100 0111222211443 7889999999999999999998864
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.12 Score=42.58 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=64.7
Q ss_pred eEEEEEeC---CC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126 459 ITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 534 (660)
Q Consensus 459 v~~l~~sp---~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd 534 (660)
|+++++.. || +.|++||.|..|++|+-.. .+..+... +.|++++-...+++.++-.+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~-----~~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET-----DKVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc-----cceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 55666544 33 5799999999999998665 12212222 578888888776655556899999998
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEc-cC--C-CEEEEEecCCeEEE
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYS-CD--G-KCIYVSCKSGHVKV 576 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~d--g-~~l~sg~~dg~I~i 576 (660)
-. ..+-..+. ...++++++. .+ | .-|++|-.+|.|-+
T Consensus 70 ~~--~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RS--QRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Cc--ceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 63 22223322 4446666554 33 3 36888888888743
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.72 E-value=0.0051 Score=39.28 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126 405 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 442 (660)
Q Consensus 405 ~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd 442 (660)
+++...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566677888899999999998 999999999999996
No 388
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.011 Score=62.12 Aligned_cols=80 Identities=10% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 629 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i 629 (660)
...+..+.|+|.-..+|.+..+|.|-++.++ .+.+++++.+ +.++. .+++|.| ||+.||.|-.||+|++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--------~~~v~-~sL~W~~-DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--------GENVT-ASLCWRP-DGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--------CCccc-eeeeecC-CCCEEEEEecCCeEEE
Confidence 4567889999999999999999999999988 7777777643 22222 3899999 8999999999999999
Q ss_pred EeCCCCceecc
Q 006126 630 IEPLESEVEWG 640 (660)
Q Consensus 630 w~~~~~~~~w~ 640 (660)
-|+.++...-+
T Consensus 89 ~Dve~~~~l~~ 99 (665)
T KOG4640|consen 89 HDVEKGGRLVS 99 (665)
T ss_pred EEccCCCceec
Confidence 99999876444
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.51 E-value=1 Score=44.95 Aligned_cols=278 Identities=13% Similarity=0.060 Sum_probs=124.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
...+..|.|..+..-.++ +..+.| +....+.. -|.......-. .-.-...++.|. ...+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~DGG~------------tW~~~~~~~~~-----~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-GAYGTI--LKTTDGGK------------TWQPVSLDLDN-----PFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-ETTTEE--EEESSTTS------------S-EE-----S----------EEEEEEEETTEEE
T ss_pred CCceEEEEEecCCEEEEE-ecCCEE--EEECCCCc------------cccccccCCCc-----cceeeEEEEEecCCceE
Confidence 668999999955554444 455554 33332221 23321110000 011235677777 4444
Q ss_pred EEEeCCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCce-eeEeeccCCCeEEEEEe
Q 006126 390 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYS 465 (660)
Q Consensus 390 ~s~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s 465 (660)
++|..+ +.+...+.|+.-..+. ..+.....+....++.....+..|.|+.=. +.|+. ........+.+..+..+
T Consensus 76 ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 76 IVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred EEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 544455 3344444444333322 122233344444444222234445443322 23332 22234455778888899
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC-CCCceeee-
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ- 543 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~- 543 (660)
+||+++++++.-....-||--... ..+.. ..-. ..|.+|.|.|++...+++..|.|+.=+. .....-..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~---w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTT---WQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred CCCcEEEEECcccEEEEecCCCcc---ceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence 999988887665566678764310 01111 1111 5899999999998888888888888772 22221111
Q ss_pred -ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 544 -LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 544 -~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.........+..++|.+++...++|+. |.+ +.....|+.=........ .....+ .+.|.+ + +.-...+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~-----~~~n~~--~i~f~~-~-~~gf~lG 293 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGEN-----VPSNLY--RIVFVN-P-DKGFVLG 293 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTT-----SSS-----EEEEEE-T-TEEEEE-
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccC-----CCCceE--EEEEcC-C-CceEEEC
Confidence 111112445899999998888877654 444 345555654333321100 022244 888876 3 3444455
Q ss_pred CCCeEEEE
Q 006126 623 TNGRVHVI 630 (660)
Q Consensus 623 ~Dg~v~iw 630 (660)
.+|.|.=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78877554
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.22 Score=48.14 Aligned_cols=170 Identities=8% Similarity=0.079 Sum_probs=110.4
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 530 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i 530 (660)
+.+....+.++.|+|+.+.|++......-.+|=...|+.+...++. .. ...-.+.+..+|.++++- .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~-------~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GF-------SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-cc-------CChhHeEEecCCEEEEEehhcceE
Confidence 3444556999999999999999888888888877888877776666 11 234578888888888885 78888
Q ss_pred EEEeCCCCceeee-------ecCCCC-CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC-c
Q 006126 531 DVYEAPTLNHTSQ-------LVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS-L 601 (660)
Q Consensus 531 ~iwd~~~~~~~~~-------~~~~~~-~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~-~ 601 (660)
.++.+.....+.. +....+ +.....++|+|..+.+..+-+-.-+.||.+..+... +..+.. .++.. .
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~--~~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHAS--LDPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--cccccc--cCccccc
Confidence 8887765432211 111112 567889999999999988888777777776633211 111100 01101 1
Q ss_pred ccc---eEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 602 ELY---PLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 602 ~v~---~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.++ +.++.|++..+..|+-+.+++.|.-.+..
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111 33778887666677766666666555544
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.43 E-value=0.41 Score=52.82 Aligned_cols=223 Identities=15% Similarity=0.110 Sum_probs=116.9
Q ss_pred CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCeEEEEeCC-C-----eEEEEeCCCCceee--EeeccCCCeEEEEEe
Q 006126 395 GKISIFSLETFQTLATFANP-PPIATYFILLPQDLFAFGFDD-S-----SILVHCPCTKKTKA--KLKGHQNRITCLAYS 465 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~l~s~~~d-~-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s 465 (660)
..+..||..++.......-. ...-.+++...+-..++||.| | ++..||..+++-.. .+.......... .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--V 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--E
Confidence 36888888877544332212 222233444333378888888 3 68899988776332 111111111111 2
Q ss_pred CCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE-EecCCcEEEE-Eec------CcEEE
Q 006126 466 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPDQIHLLS-IHE------GQIDV 532 (660)
Q Consensus 466 p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~-~~d------~~i~i 532 (660)
-+|...++|+.|| ++-.||..+.+-....++. . ...... ..-+|...++ |.+ .++..
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~-------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---T-------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCCCC---c-------ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence 2688888999886 4778888773311111111 1 111111 1224655555 433 35888
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
||..+.+....-......... .++ .-++...+.||.|+ +|..||..+.+-...-. ...+ ..... .
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~--m~~~----rs~~g--~ 518 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP--MTSP----RSAVG--V 518 (571)
T ss_pred EcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEccc--Cccc----ccccc--E
Confidence 998876643322211101111 122 24677778888776 37789988765443311 1111 11122 2
Q ss_pred EEEecCCCCEEEEEeCCC-----eEEEEeCCCCceeccCCCC
Q 006126 608 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg-----~v~iw~~~~~~~~w~~~~~ 644 (660)
+.+ ++...++|+.|| +|-.||+.+. +|...++
T Consensus 519 ~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~~~ 555 (571)
T KOG4441|consen 519 VVL---GGKLYAVGGFDGNNNLNTVECYDPETD--TWTEVTE 555 (571)
T ss_pred EEE---CCEEEEEecccCccccceeEEcCCCCC--ceeeCCC
Confidence 222 677888898885 6777877664 5665554
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.079 Score=59.45 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=76.5
Q ss_pred CeEEEEEeCCEEEEEe-CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126 378 SISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 454 (660)
Q Consensus 378 ~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~ 454 (660)
.+.+.+.-+..++.|+ .|.+-..|+...-. ...=.....+|++++|+.+| .++.|-.+|.|.+||+..++.++.+..
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 3444444467788888 68888888765311 11112345789999999999 999999999999999999999999887
Q ss_pred cCCCeEEEE---EeCCCCEEEEEeCCCcEEEEEc
Q 006126 455 HQNRITCLA---YSLSLNVLVSSGADAQLCVWDA 485 (660)
Q Consensus 455 ~~~~v~~l~---~sp~~~~l~s~s~dg~i~vwd~ 485 (660)
|..+.+++- +..++..++++...|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 776666554 4445667777777776 5554
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.39 E-value=0.012 Score=40.34 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=30.0
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
+..++|+| ..+++|.++.||.|.++++ +++..|+
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 44999999 7999999999999999999 7777774
No 394
>PHA02713 hypothetical protein; Provisional
Probab=96.38 E-value=0.3 Score=53.91 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=90.6
Q ss_pred CCEEEEEe-C------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceee--
Q 006126 386 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA-- 450 (660)
Q Consensus 386 ~~~l~s~~-d------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~-- 450 (660)
+...+.|+ + ..+..||+.+......-.-...........-+| ..+.||.++ ++..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55556665 3 247788987765322111111111112223356 667777654 48889988653221
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEeCCC-----------------------cEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
.+.........+. -+|+..+.|+.++ .+..||..+.+= ..+..+.....
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W---~~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW---ETLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE---eecCCCCcccc---
Confidence 1111111111222 2677777777653 467788776431 11111111111
Q ss_pred CCeEEEEEecCCcEEEEE-ec------CcEEEEeCCC-Ccee--eeecCCCCCCCeEEEEEccCCCEEEEEecCC--eEE
Q 006126 508 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVK 575 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~~-~d------~~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg--~I~ 575 (660)
. .+++.. +++..+.| .+ ..+..||..+ .+-. ..+.. .......++ -+|+..++|+.|| .+.
T Consensus 456 -~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~--~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 -R-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTIL--HDNTIMMLHCYESYMLQD 528 (557)
T ss_pred -c-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEE--ECCEEEEEeeecceeehh
Confidence 1 122222 35555543 32 2467899886 4432 22211 122222222 3688888999888 677
Q ss_pred EEECCCCe
Q 006126 576 VFDTSTLE 583 (660)
Q Consensus 576 iwd~~~~~ 583 (660)
.||..+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 78887765
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.37 E-value=1.5 Score=45.28 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=102.3
Q ss_pred CCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe---C--
Q 006126 322 SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS---G-- 394 (660)
Q Consensus 322 dg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~---d-- 394 (660)
+.++|+..+- .+.|.|.|+.+..... ++...-....+... .+-..+-+.-+.- |+.++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P---------~l~KvIe~~ev~~k--~g~s~PHT~Hclp~G~imIS~lGd~~G~ 154 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP---------RLHKVIEPEEVFEK--TGLSRPHTVHCLPDGRIMISALGDADGN 154 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHH--H-EEEEEEEEE-SS--EEEEEEEETTS-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC---------ceEeeeCHHHHHhh--cCCCCCceeeecCCccEEEEeccCCCCC
Confidence 4578888884 6899999987654321 12111111000000 0111111111222 55666642 2
Q ss_pred --CcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCC-eEEEEeC--------------------CCeEEEEeCCCCce
Q 006126 395 --GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGFD--------------------DSSILVHCPCTKKT 448 (660)
Q Consensus 395 --g~I~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~-~l~s~~~--------------------d~~I~iwd~~~~~~ 448 (660)
|-+.++|-++.+......... .--..+.|.|.. .++|... ..++.+||+.+.+.
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 468888988888777765432 233567777866 6665432 35899999999999
Q ss_pred eeEeeccC--CCeEEEEEe--CCCCE-EEEEeCCCcEEEEEc-CCCeeeeceeeeeeeecc---------------CCCC
Q 006126 449 KAKLKGHQ--NRITCLAYS--LSLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL---------------VPET 507 (660)
Q Consensus 449 ~~~~~~~~--~~v~~l~~s--p~~~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~---------------~~~~ 507 (660)
++++.--. .....+.|. |+..+ ++.+.-..+|..|-- ..++-...+.+. +.... .+
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~~~~~P-- 311 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKPFGAVP-- 311 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGGG-EE---
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCcccccccccccccCC--
Confidence 99886432 234456664 44444 333334455555433 333322222222 21110 01
Q ss_pred CCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc---eeeeecCCC--------------CCCCeEEEEEccCCCEEEEE
Q 006126 508 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---HTSQLVPDK--------------MDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~--------------~~~~v~~~~~s~dg~~l~sg 568 (660)
.-|+.|.+|.|.++|.++ ..|.|+.||+.+-. .+.++...+ -.+...-+..|-||+.|+..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 457899999999999995 78999999997632 222221110 01233567888899888865
Q ss_pred e
Q 006126 569 C 569 (660)
Q Consensus 569 ~ 569 (660)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 3
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.28 E-value=1.1 Score=50.97 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=98.2
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe-------------EEEEEcC---CCeEEEEeC----------CCeE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI 438 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v-------------~~v~~sp---~~~l~s~~~----------d~~I 438 (660)
+..++.++ |+.+.-.|.++|+.+..+... ..| ..+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44676776 999999999999998776421 111 0111122 335555642 6889
Q ss_pred EEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 439 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
+-+|.++|+.+-.+..-.-..... -+.+.....++.+. ....+|.+.+.. . +..+.. +..+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glv------y-~ptGn~-------~pd~~g 402 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLV------Y-LPMGNQ-------TPDQWG 402 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeE------E-EeCCCc-------cccccC
Confidence 999999999987775311001110 11333222222221 233444444221 1 111111 011111
Q ss_pred CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCC-------CCeEEEEEcc-CCC---EEEEEecCCeEEEEECCCCeeE
Q 006126 518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELR 585 (660)
Q Consensus 518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~s~-dg~---~l~sg~~dg~I~iwd~~~~~~~ 585 (660)
..+.... -..++|.-.|.++|+..-.++.-.|. ....-+.+.. +|+ .++.++.+|.++++|.++|+.+
T Consensus 403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 403 GDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 1110001 13456777788888876655442221 1111122322 563 7899999999999999999988
Q ss_pred EEee
Q 006126 586 CQIN 589 (660)
Q Consensus 586 ~~~~ 589 (660)
...+
T Consensus 483 ~~~~ 486 (764)
T TIGR03074 483 VPVE 486 (764)
T ss_pred eece
Confidence 7643
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.008 Score=55.49 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=59.2
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC
Q 006126 471 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 549 (660)
Q Consensus 471 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 549 (660)
+...+.||.|+-++++..... .+ -..-+. .. ...-.-+..+++ +.+|.|++|...-............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s----~r-se~~~~----e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~ 101 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES----CR-SERFID----EG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE 101 (238)
T ss_pred hccccCCcccccchhhhhhhh----hh-hhhhhh----cc--eeecccCceEEeecccceEEEecCCccchHHHhhhccc
Confidence 445677888888888762211 11 000011 01 111122445666 5899999998762211111111111
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
......+.-..++.+.++++.||.||.|++..++.+....
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 1222223333456689999999999999999888776653
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.08 E-value=1.3 Score=41.51 Aligned_cols=202 Identities=18% Similarity=0.184 Sum_probs=108.7
Q ss_pred CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEc-CCC--eEEEE-eCCCeEEEEeCCC--CceeeEee---c--cCCCeEE
Q 006126 394 GGKISIFSLETFQTLAT-FANPPPIATYFILL-PQD--LFAFG-FDDSSILVHCPCT--KKTKAKLK---G--HQNRITC 461 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~s-p~~--~l~s~-~~d~~I~iwd~~~--~~~~~~~~---~--~~~~v~~ 461 (660)
.|.|.-||+.+.+..+. +.+.. ..++.+- .++ .++++ +..-.|.-||-.. .....++. . ...+.+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 57777799887655443 33222 2233332 232 33333 3333455577332 22222211 1 2345666
Q ss_pred EEEeCCCCEEEEEeC-C---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE--EecCc
Q 006126 462 LAYSLSLNVLVSSGA-D---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQ 529 (660)
Q Consensus 462 l~~sp~~~~l~s~s~-d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~d~~ 529 (660)
-..+|+|++++ |.. | |.++.|-... .+..+. +.- ..-+.++|+.+.+.+.. +.+-+
T Consensus 114 gkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~-~~v---~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 114 GKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-------QVELIW-NCV---GISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred CccCCCCceee-eeeccccccccccccEEEEeccCC-------Cceeee-hhc---cCCccccccccCcEEEEEccCceE
Confidence 77899999844 332 2 3344443322 111001 111 23346889888887776 46667
Q ss_pred EEEEe--CCCCce-----eeeecCCC--CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 530 IDVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 530 i~iwd--~~~~~~-----~~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
|.-|| ..+|.. +..+.... .....-.+++..+|++.++.-..++|...|..+|+.+..+..+ .
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t 253 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------T 253 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------C
Confidence 76677 545432 22222100 0112234666778888888888899999999999999988764 2
Q ss_pred cccceEEEEEecCCCCEEE
Q 006126 601 LELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~ 619 (660)
.. +++++|--.+-..|.
T Consensus 254 ~q--itsccFgGkn~d~~y 270 (310)
T KOG4499|consen 254 PQ--ITSCCFGGKNLDILY 270 (310)
T ss_pred Cc--eEEEEecCCCccEEE
Confidence 23 448888653333443
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.04 E-value=2.4 Score=44.39 Aligned_cols=85 Identities=9% Similarity=-0.118 Sum_probs=54.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE-E-------------ecCCC
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA-A-------------HPLEP 615 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~-~-------------sp~d~ 615 (660)
...+.+++.+|++++.|+...=|.|.++|+.++..+..++.. .+..+.-+.+. - .+...
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY-------RdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY-------RDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC-------ccceEEEEEeecccccccccccccCCCCcce
Confidence 456788999999998888766699999999999888877732 12111100000 0 00001
Q ss_pred CE-EEEEeCCCeEEEEeCCCCceeccC
Q 006126 616 NR-IALGLTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 616 ~~-l~s~s~Dg~v~iw~~~~~~~~w~~ 641 (660)
.+ ++-+-.-|.|-||.+..|......
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 12 334556799999999999775443
No 400
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.91 E-value=1 Score=47.11 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=111.2
Q ss_pred CCeEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 426 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 426 ~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
++.++.+..+|.|.-.|..++..+.....- ...+.+-.+..+|+ ++.++.++.+..+|.++|+......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~--- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S--- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C---
Confidence 446666678888888888888765332211 12223323333665 7778889999999998877655444441 0
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-CCCCeEEEEEccCCCEEEEEec--CCeEEEEECC
Q 006126 504 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS 580 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~ 580 (660)
. .+..-..-.++..+..+.++.+.-.|..+|+..-.+.... -...+...-. .....++.+.. ++.+.-.|..
T Consensus 143 -~---~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 -P---YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred -e---EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEcc
Confidence 0 1222223334433333456777777777777654432211 0111111111 22344555555 6678888888
Q ss_pred CCeeEEEeecccccCCCCc--CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 581 TLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~--~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
+|................. ...+....+.. + .-+..++.+|.+.-.+..+++.+|....+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV---D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEE---C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8988877542211110000 00111111111 1 23466777888999999999999988876
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.84 E-value=0.8 Score=50.56 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=100.7
Q ss_pred CeEEEEEe-CCEEEEEe-C-C-----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeC
Q 006126 378 SISCFALR-GSHLFSAS-G-G-----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCP 443 (660)
Q Consensus 378 ~v~~v~~s-~~~l~s~~-d-g-----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~ 443 (660)
...+++.. +...++|+ | | .+..||..+.+-...-.-.......-...-+| ..++||.|| +|-.||.
T Consensus 324 ~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 324 CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 34455555 66667777 7 3 58888988776433111111111111122356 888999887 5888888
Q ss_pred CCCceeeEeeccCCCeEEEE-EeCCCCEEEEEeCCC------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 444 CTKKTKAKLKGHQNRITCLA-YSLSLNVLVSSGADA------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~-~sp~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
.+.+--..-. ......+.. ..-+|...++|+.++ ++..||..+..-....++.+... -..++.-
T Consensus 404 ~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~--------~~g~a~~ 474 (571)
T KOG4441|consen 404 VTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS--------GFGVAVL 474 (571)
T ss_pred CCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc--------cceEEEE
Confidence 7654221111 111222221 222688888888654 57788888754222222221111 1123333
Q ss_pred cCCcEEEE-EecC-----cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCe
Q 006126 517 PDQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 583 (660)
Q Consensus 517 p~~~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~ 583 (660)
++...++ |.|+ +|..||..+.+....-........+-.+. -+++..++|+.|| +|..||..+.+
T Consensus 475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 475 -NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3555555 5554 37889988766543321111122222222 3566777787775 57777777654
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.035 Score=62.13 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=73.3
Q ss_pred CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC
Q 006126 519 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 597 (660)
Q Consensus 519 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g 597 (660)
+..++.| ..|.+-..|+.. ..-.-..+....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+ |
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 4455665 667888888743 22212222234789999999999999999999999999999999999888754 3
Q ss_pred CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+ ....++-+.+.. ++..+.++..-|. +|+..-
T Consensus 173 a--p~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 173 A--PVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred C--ccceEEEEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence 2 223344666666 4566777766665 666543
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.82 E-value=3 Score=43.68 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=53.0
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-----------------CC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-----------------DQ 519 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----------------~~ 519 (660)
..+.++..+|++++.++...-|.|.++|+.++..+ + +..|..+ ..+.-+.... ..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-----r-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-----R-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-----h-hhccCcc--ceEEEEEeecccccccccccccCCCCcce
Confidence 45778999999998888877799999999985432 2 2333321 1111111111 12
Q ss_pred cEEEE-E-ecCcEEEEeCCCCceeeeecC
Q 006126 520 IHLLS-I-HEGQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 520 ~~l~~-~-~d~~i~iwd~~~~~~~~~~~~ 546 (660)
.+|+. . .-|.|.||++++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 34444 4 789999999999888877754
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.59 E-value=0.31 Score=54.75 Aligned_cols=91 Identities=11% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCC----------Ce--eEEE-eecccccCCCCcCcccceEEEEEecC--C
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LE--LRCQ-INLTAYAQPGTISLELYPLVIAAHPL--E 614 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~----------~~--~~~~-~~~~~~~~~gh~~~~v~~~~v~~sp~--d 614 (660)
...|..+.++|+|++|+..|..|.+ |-.+.. |+ ..+. +......... .....+..+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence 4568889999999999998887644 333321 11 1221 1111111111 22345669999994 2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126 615 PNRIALGLTNGRVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~ 643 (660)
+..|+.-..|+++|+||+......|....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 47888999999999999987665554433
No 405
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.57 E-value=1.6 Score=41.86 Aligned_cols=201 Identities=11% Similarity=0.003 Sum_probs=130.7
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
-..++-.||| .-+++...+.|--.|..+|+....--+....-..|..-|||..-++-+.. .|.-.|-++.+... .+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-f~- 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-FP- 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-ee-
Confidence 3467888999 88888888999999999998877666666777788899999877664433 56666766644221 22
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 576 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i 576 (660)
+...|.+ .......|.+.|..-.++..|.---.|..+ ..+.++... ....-+.+|..|||...++.-.++.|-.
T Consensus 141 --lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 141 --LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred --cccccCC--CcccceeeCCCccEEEeeccccceecCccc-CceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 2333433 567889999999988885443222223221 223333332 2555678899999999999888888888
Q ss_pred EECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 577 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 577 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.|..++. -.++....-.-.| .. .+--+| -+..-+|-...+.+.-+|+....
T Consensus 215 idp~~~~-aev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 215 IDPFAGH-AEVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCC-cceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 8888873 3333322111011 11 333345 57777777777888888876654
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.53 E-value=5.7 Score=44.99 Aligned_cols=312 Identities=12% Similarity=0.064 Sum_probs=169.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceee---eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT---LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
.|--|+.+|.++..||.+.-+-+... ++.... ..| -+.++.-=.|+..++.-+.+..|.-..+|.-...
T Consensus 590 ~~e~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~Kk~~l----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-- 661 (1096)
T KOG1897|consen 590 TFEGDIHYLLVALGDGALLYFVLDIN--TGQLSDRKKVTL----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-- 661 (1096)
T ss_pred EeeccceEEEEEcCCceEEEEEEEcc--cceEcccccccc----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc--
Confidence 55566889999999999877665531 122111 111 2456666667665544344444544444432111
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEE-EEEe----CCEEEEEeCCcEEEEECCCCeE--EEEEcCCCCCe
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR----GSHLFSASGGKISIFSLETFQT--LATFANPPPIA 418 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~s----~~~l~s~~dg~I~iwd~~~~~~--~~~~~~~~~~v 418 (660)
.++.+-+- ..+.. +.|+ ...++++..+.+++.-++.-+. ++++. -....
T Consensus 662 -----------Lv~spls~------------kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~p 717 (1096)
T KOG1897|consen 662 -----------LVYSPLSL------------KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESP 717 (1096)
T ss_pred -----------EEEeccch------------HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCCh
Confidence 11111110 01111 1222 5567777777777776654222 23322 22334
Q ss_pred EEEEEcCCC-eEEEEeCC--------------CeEEEEeCCCCceeeEeec----cCCCeEEEEEeCC-CCEEEEEeC--
Q 006126 419 TYFILLPQD-LFAFGFDD--------------SSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSGA-- 476 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d--------------~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s~-- 476 (660)
..+++.+.. .+.+.+.. ..++++|-++.+.+...+- ....+.++.|..| +.++++|+.
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v 797 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLV 797 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEee
Confidence 456666644 33333221 1467777776655443221 1124555668777 777777753
Q ss_pred --------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC
Q 006126 477 --------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK 548 (660)
Q Consensus 477 --------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 548 (660)
.|.|.+|.+..+..+ ..+. +.... +.+.++..- +|++ +++-+..|++|+..+.+.++.-. .
T Consensus 798 ~Pde~ep~~GRIivfe~~e~~~L--~~v~---e~~v~--Gav~aL~~f-ngkl-lA~In~~vrLye~t~~~eLr~e~--~ 866 (1096)
T KOG1897|consen 798 YPDENEPVNGRIIVFEFEELNSL--ELVA---ETVVK--GAVYALVEF-NGKL-LAGINQSVRLYEWTTERELRIEC--N 866 (1096)
T ss_pred ccCCCCcccceEEEEEEecCCce--eeee---eeeec--cceeehhhh-CCeE-EEecCcEEEEEEccccceehhhh--c
Confidence 477888877662211 1111 00000 345554333 3444 44566789999998876655432 2
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCeEEEEE--CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe
Q 006126 549 MDLPITYATYSCDGKCIYVSCKSGHVKVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 626 (660)
Q Consensus 549 ~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd--~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~ 626 (660)
+..++..+...-.|+.+++|.--+.+.+-. ...|.....-.. -.+-|.+++.+-. +..++.+..+|.
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD---------~~p~Wmtaveil~--~d~ylgae~~gN 935 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD---------YNPNWMTAVEILD--DDTYLGAENSGN 935 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh---------hCccceeeEEEec--CceEEeeccccc
Confidence 578888999999999999998877776644 444444443221 2234444666544 456667778888
Q ss_pred EEEEeCCC
Q 006126 627 VHVIEPLE 634 (660)
Q Consensus 627 v~iw~~~~ 634 (660)
+++-..++
T Consensus 936 lf~v~~d~ 943 (1096)
T KOG1897|consen 936 LFTVRKDS 943 (1096)
T ss_pred EEEEEecC
Confidence 88876654
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.49 E-value=0.04 Score=37.76 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~ 584 (660)
...|..++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999999 5543
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.36 E-value=0.73 Score=50.49 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=74.7
Q ss_pred eEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc--cCCCEEEEEecCCeEEEEECC------
Q 006126 510 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS------ 580 (660)
Q Consensus 510 v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~sg~~dg~I~iwd~~------ 580 (660)
+.-+.-+.-++..++. ...++.|||.+.+.....-.. .....|.++.|. |||+.+++.|-.+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3344455555555554 556899999988775444332 237889999996 899999999999999998532
Q ss_pred ---CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 581 ---TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 581 ---~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+...+..+... .++.+++. +..|.+ +|..++.+ ++.+.|++-.
T Consensus 111 ~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCC
Confidence 22333444332 34456666 899999 77655544 3568888753
No 409
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.05 Score=53.72 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHhhhcccc--------ccHHHHHHHHhcCchHhHHHhhhh----hcCCCCCcchhhh
Q 006126 65 KEELIYLIHQFLNEEEFKETLHKLEQETRVF--------FDINYFREYITSGEWDNAEKYLSA----FTNMNDNTYSAKM 132 (660)
Q Consensus 65 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~--------~~~~~l~~~i~~G~w~~~~~~l~~----~~~~~~~~~~~~~ 132 (660)
++-+.|+|..||.-+||-.+|..|-++|.+. .++..+++++++|+...|+.-.+. |+. ..+.-.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK----~~S~lE 190 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK----EESSLE 190 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh----ccchhh
Confidence 8889999999999999999999999999986 247888999999998888876532 211 112223
Q ss_pred HHHHHHHHHHHHhhhcc
Q 006126 133 FSQIQRQKYLEAVDRQQ 149 (660)
Q Consensus 133 ~~~i~~q~~lell~~~e 149 (660)
| ++.-|.|+||+..++
T Consensus 191 f-~lRlQefIELi~~~~ 206 (389)
T KOG0396|consen 191 F-QLRLQEFIELIKVDN 206 (389)
T ss_pred h-HHHHHHHHHHHHhcc
Confidence 3 489999999999883
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.29 E-value=4.3 Score=45.88 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC---------Cce---eeEe--------eccCCCeEEEEEeCC---CCEE
Q 006126 416 PIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKT---KAKL--------KGHQNRITCLAYSLS---LNVL 471 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~---------~~~---~~~~--------~~~~~~v~~l~~sp~---~~~l 471 (660)
-.|..+.++|+| .++..|..|.+.+.=.+. |+. .+++ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 357889999999 888777766443332221 111 1111 123457788889885 4788
Q ss_pred EEEeCCCcEEEEEcCC
Q 006126 472 VSSGADAQLCVWDAVG 487 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~ 487 (660)
++-+.|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888899999998864
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=1.3 Score=40.68 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=100.7
Q ss_pred EEEEe-CCEEEEEe---CCcEEEEECCCCeEEEEEcCCCCCeEE--EEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126 381 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY--FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 454 (660)
Q Consensus 381 ~v~~s-~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~~~~v~~--v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~ 454 (660)
.+.+. |.++.+.+ ...|++||+.+|+.+..-.-....+.. +.-..|..-.-.-.+|.-..+|.++-+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 34445 65666666 368999999999887665422212211 111122222233467888899988887776664
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEE
Q 006126 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 533 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iw 533 (660)
..+.=+.++ .|++.|+.++...+++.-|.++........+. ..+..- ..++.+.|- +|...+- -.+..|...
T Consensus 129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT--~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVT--DDGVPV--SKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEE--ECCeec--ccccceeee-ccEEEEeeeeecceEEE
Confidence 333444443 36666777766677877777764333222221 222110 223344444 4544443 356667777
Q ss_pred eCCCCceeeeecCC----------CCCCCeEEEEEccCC-CEEEEE
Q 006126 534 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 568 (660)
Q Consensus 534 d~~~~~~~~~~~~~----------~~~~~v~~~~~s~dg-~~l~sg 568 (660)
|..+|+.+..+... .+....+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777766554321 134567789999887 455554
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.17 E-value=0.93 Score=48.15 Aligned_cols=145 Identities=8% Similarity=-0.020 Sum_probs=89.2
Q ss_pred CCeEEEEEe-CCEEEEEe----CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-----eEEEEeCCCeEEEEeCCC-
Q 006126 377 DSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT- 445 (660)
Q Consensus 377 ~~v~~v~~s-~~~l~s~~----dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-----~l~s~~~d~~I~iwd~~~- 445 (660)
.++..++|. |+.++-.. +|.+++=|- +.+ +.-..|..+.|.|-+ .+++.--.+.|.||.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 568899999 77655433 355544332 222 333457889999864 566666788999998752
Q ss_pred ----CceeeEeec-c--CC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 446 ----KKTKAKLKG-H--QN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 446 ----~~~~~~~~~-~--~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
++.+..-.. . .- --..+.|+|....|++-.....=.+++++.... .++.-..++ +.|.|.+|.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi~~~----G~IhCACWT 164 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS----RVKADIKTS----GLIHCACWT 164 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc----eEEEeccCC----ceEEEEEec
Confidence 222222111 1 11 123567999998888777665555677665321 122111222 689999999
Q ss_pred cCCcEEEEE--ecCcEEEEeCC
Q 006126 517 PDQIHLLSI--HEGQIDVYEAP 536 (660)
Q Consensus 517 p~~~~l~~~--~d~~i~iwd~~ 536 (660)
+||+.|+++ ..=.-++||-.
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCc
Confidence 999999885 43457889853
No 413
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.16 E-value=0.73 Score=50.50 Aligned_cols=116 Identities=8% Similarity=0.063 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCeEE-EEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCCCe---
Q 006126 417 IATYFILLPQDLFA-FGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWK--- 489 (660)
Q Consensus 417 ~v~~v~~sp~~~l~-s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s--p~~~~l~s~s~dg~i~vwd~~~~~--- 489 (660)
...-+.-+.-+.++ +.+....+.|||.+.+.....-. ...+.|.++.|. |+|+.+++.+..+.|.+|.-....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444444555333 33444589999999876443222 346789999984 689999999999999998542111
Q ss_pred -eeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126 490 -KLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 535 (660)
Q Consensus 490 -~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~ 535 (660)
.....++..+ ...+++ .+|.+..|.++|..++ +.++.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 0011122211 234554 6789999999986554 45667888874
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=1.1 Score=41.08 Aligned_cols=181 Identities=12% Similarity=0.035 Sum_probs=99.7
Q ss_pred CC-eEEEEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 426 QD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 426 ~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
+| ++.+.+.-| .|++||+.+|+.+..-.-....+..=-...-|..+. -.-.+|.-..+|.++-+........
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 44 566655443 799999999987754432211221111111123322 2345777888998885443332222
Q ss_pred ccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeE---EEEEccCCCEEEEEecCCeEEEE
Q 006126 502 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT---YATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
+.-..+ ..|++.|+.+ ...+++.-|.++.....++.......+|. -+.| -||...|-.-.+..|...
T Consensus 131 ------GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI 201 (262)
T COG3823 131 ------GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARI 201 (262)
T ss_pred ------Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEE
Confidence 233333 3455556554 55567777776655444443322233333 3444 356666655556678888
Q ss_pred ECCCCeeEEEeeccccc----CCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 578 DTSTLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 578 d~~~~~~~~~~~~~~~~----~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
|..+|+.+..+..+... ..+.+.+..+ .+++.|+.+++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEec
Confidence 89999988887754322 2222233444 899999544666666
No 415
>PHA03098 kelch-like protein; Provisional
Probab=95.11 E-value=1.5 Score=48.35 Aligned_cols=183 Identities=11% Similarity=0.045 Sum_probs=87.8
Q ss_pred CCEEEEEe-CC------cEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCceee
Q 006126 386 GSHLFSAS-GG------KISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA 450 (660)
Q Consensus 386 ~~~l~s~~-dg------~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~ 450 (660)
+..++.|+ ++ .+..||..+.+....-.. .......+ .-++ .++.||.+ ..+..||..+++-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 55555555 32 577888887665322111 11112222 2356 66777765 257788887654321
Q ss_pred --EeeccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 451 --KLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 451 --~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
.+. +...-.+++ .-+++..+.|+.+ ..+..||..+.+-. .+...+.+.. -.+++. .++...
T Consensus 373 ~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~-----~~~~~~-~~~~iy 441 (534)
T PHA03098 373 EPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY-----GGCAIY-HDGKIY 441 (534)
T ss_pred CCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc-----CceEEE-ECCEEE
Confidence 111 111111222 2356777777732 35788998764321 1111111111 112222 345555
Q ss_pred EEE-ec--------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCe
Q 006126 523 LSI-HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 583 (660)
Q Consensus 523 ~~~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~ 583 (660)
+.| .+ ..+.+||..+.+-...-...........+. .+++.++.|+.+ +.|.+||..+.+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 553 22 238899988765432211110011111222 367777777754 468888887764
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.06 E-value=1.8 Score=42.39 Aligned_cols=150 Identities=19% Similarity=0.075 Sum_probs=83.7
Q ss_pred CeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEE
Q 006126 458 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 533 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iw 533 (660)
.+.+.+++++++.++... ....++++...... .....+ ..+....|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~-------~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV-------RPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc-------eeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688899999999887766 23446666544311 111122 357788999998777763 44555555
Q ss_pred -eCCCCceee-eecCCCCCCCeEEEEEccCCCEEEEEe---cCCeEEEEECC---CCeeEEEeecccccCCCCcCcccce
Q 006126 534 -EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 534 -d~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~---~dg~I~iwd~~---~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
+..++.... ..........|..+.+||||..++... .++.|++=-+. .+.......+..... .....+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~----~~~~~v 168 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP----PLLSDV 168 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc----cccCcc
Confidence 333333221 121111122899999999999888655 35777776543 231111111111110 111234
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 006126 606 LVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~D 624 (660)
..++|.+ ++.+++.+...
T Consensus 169 ~~v~W~~-~~~L~V~~~~~ 186 (253)
T PF10647_consen 169 TDVAWSD-DSTLVVLGRSA 186 (253)
T ss_pred eeeeecC-CCEEEEEeCCC
Confidence 5999999 66666655443
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.55 Score=53.36 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=91.3
Q ss_pred CCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCCCeeee---ceeeeeeeec-cCCCCCCeEEEEEecCCcEEEE--EecC
Q 006126 457 NRITCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLC---SKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS--IHEG 528 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~--s~dg~i~vwd~~~~~~~~---~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~--~~d~ 528 (660)
..+..+...+|+...++. +.+-.|..||+++..... ..++.....+ ..+ ....++.|.|.-....+ ..|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~--vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKP--VFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccc--cccccccccCCccchhhhhcccc
Confidence 355566667787665443 334478999998744322 1111100000 011 35667888886544333 4888
Q ss_pred cEEEEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 529 QIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 529 ~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
.|++.-+..... +..+. .....++++|+|.|+.++.|-..|++.-|... ++....+...... ....+++
T Consensus 179 sl~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------e~yrvl~ 248 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------ENYRVLS 248 (1405)
T ss_pred chhhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC------CCcceeE
Confidence 888887753322 22222 36788999999999999999999999888754 3434444322211 1355779
Q ss_pred EEEecCCCCEEEEE
Q 006126 608 IAAHPLEPNRIALG 621 (660)
Q Consensus 608 v~~sp~d~~~l~s~ 621 (660)
|.|-. ...++++-
T Consensus 249 v~Wl~-t~eflvvy 261 (1405)
T KOG3630|consen 249 VTWLS-TQEFLVVY 261 (1405)
T ss_pred EEEec-ceeEEEEe
Confidence 99987 45565543
No 418
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.79 E-value=0.095 Score=48.62 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEE-EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeE
Q 006126 386 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFI-LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 460 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~-~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~ 460 (660)
+..+++|. +|.|.+|...-. .....+......|.++. --.++ +..+++.||.|+.|++.-++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56677777 999999987621 11111122223333322 23344 78899999999999999888777766676 4444
Q ss_pred EEEEeCCCCEEEEE--eCCCcEEEEEcCC
Q 006126 461 CLAYSLSLNVLVSS--GADAQLCVWDAVG 487 (660)
Q Consensus 461 ~l~~sp~~~~l~s~--s~dg~i~vwd~~~ 487 (660)
....+..++++.++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 44455555566665 6666666666654
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.71 E-value=1.1 Score=46.74 Aligned_cols=150 Identities=8% Similarity=0.040 Sum_probs=80.0
Q ss_pred CCeEEEEEeCCCCEEEEEe-----------CCC-cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 457 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
.....|+|.++|+.+++-. ..+ .|.+++-..+.... .... .+.... .....+++.++| .+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-d~~~-vfa~~l---~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-DKSN-VFAEEL---SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-ceeE-EeecCC---CCccceeEecCC-EEEe
Confidence 3456788999998777643 223 67777654322111 1111 121111 346789999999 4444
Q ss_pred EecCcEEEE-eCCCC-----ce--e-eeecCCC--CCCCeEEEEEccCCCEEEEEecC-------------------CeE
Q 006126 525 IHEGQIDVY-EAPTL-----NH--T-SQLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 574 (660)
Q Consensus 525 ~~d~~i~iw-d~~~~-----~~--~-~~~~~~~--~~~~v~~~~~s~dg~~l~sg~~d-------------------g~I 574 (660)
. ...|..| |.... +. + ..+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 3345544 54211 11 1 1122110 13447789999999876654421 446
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 625 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg 625 (660)
.-++..+++.. .+. .|+ .+...++|+| +|+++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence 66666655432 221 132 2234899999 798887755443
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=4.1 Score=44.71 Aligned_cols=171 Identities=10% Similarity=0.101 Sum_probs=86.7
Q ss_pred CeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEE--E--cCCCCCeEEEEEcCCC-eEEEEeCCCeEE-EEeCCCCcee
Q 006126 378 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLAT--F--ANPPPIATYFILLPQD-LFAFGFDDSSIL-VHCPCTKKTK 449 (660)
Q Consensus 378 ~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~--~--~~~~~~v~~v~~sp~~-~l~s~~~d~~I~-iwd~~~~~~~ 449 (660)
.+-.+.|+ ...|++.. +|++.+|++.. +.+.. . ......|..+.+..+| .+.+. +|.+. +-+... ..+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~-~~~ 160 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEE-PKL 160 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCc-chh
Confidence 77889999 77777777 99999999863 33222 1 2233446666666677 44333 33333 333332 122
Q ss_pred eEeec---cCCCeEEEEEeCCCCEE-EEEeCCCcE--EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 450 AKLKG---HQNRITCLAYSLSLNVL-VSSGADAQL--CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 450 ~~~~~---~~~~v~~l~~sp~~~~l-~s~s~dg~i--~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
.++.. ....-+|-...+++... .....+-.+ .++-..... .....+...+ +.+..+..||+.++|+
T Consensus 161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~----~q~~~~~~~~----~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR----VQLHALSWPN----SSVVKISVSPNRRFLA 232 (829)
T ss_pred hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc----ccccccCCCC----ceEEEEEEcCCcceEE
Confidence 22322 11111232222222111 111111000 111111110 1111122222 4688899999999999
Q ss_pred E-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 524 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 524 ~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
- ..+|.|.+-+....++...+....|. +.-.++|..+
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 8 78899999988777766666543322 2225666533
No 421
>PRK10115 protease 2; Provisional
Probab=94.67 E-value=10 Score=43.18 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=116.1
Q ss_pred eEEEEEe--CCEEEEEeC--C----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-C-----CeEEEEeC
Q 006126 379 ISCFALR--GSHLFSASG--G----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHCP 443 (660)
Q Consensus 379 v~~v~~s--~~~l~s~~d--g----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d-----~~I~iwd~ 443 (660)
+..+.++ +++|+.+.| | .|++.|+.+|..+....... -..++|.+|+ .|+.... + ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 5556677 777776652 3 68899998886432221111 1468999998 4444332 2 36888899
Q ss_pred CCC--ceeeEeeccCCCeE-EEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 444 CTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 444 ~~~--~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
.++ +....+........ .+..+.++++++..+. ++.+.+++....... ...+. .... .....+. +.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~~ 278 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-HY 278 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-eC
Confidence 887 33444543333333 3333448887665443 357888885331100 01111 1111 1222222 33
Q ss_pred CCcEEEEEe-c---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEE--EECCCCeeEEEeecc
Q 006126 518 DQIHLLSIH-E---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTSTLELRCQINLT 591 (660)
Q Consensus 518 ~~~~l~~~~-d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~i--wd~~~~~~~~~~~~~ 591 (660)
.+.+.+... + ..|...++.+......+........+..+.+. .+.++++...+|.-++ ++..++. ...+...
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~ 356 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFD 356 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCC
Confidence 333333332 1 23444455421122233332223467778887 3345556666766544 4544333 3333210
Q ss_pred cccCCCCcCcccceEEEEEe--cCCCCEEEEEeC---CCeEEEEeCCCCc
Q 006126 592 AYAQPGTISLELYPLVIAAH--PLEPNRIALGLT---NGRVHVIEPLESE 636 (660)
Q Consensus 592 ~~~~~gh~~~~v~~~~v~~s--p~d~~~l~s~s~---Dg~v~iw~~~~~~ 636 (660)
+ +..+..+.++ ++++.++++.+. -+.+..+|+.+++
T Consensus 357 -----~----~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 -----D----PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -----C----CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 0 1111233344 322345544443 3678888887765
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.49 E-value=5.3 Score=39.12 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=87.2
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE-cCCCeee
Q 006126 417 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 491 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd-~~~~~~~ 491 (660)
.+.+.++++++ .++... ....++++... .....+. ....+....|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 67889999999 555544 33356666543 3222221 223677888999988777777667767763 3332211
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCC---CCceee-----eecCCCCCCCeEEEEEc
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TLNHTS-----QLVPDKMDLPITYATYS 559 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~---~~~~~~-----~~~~~~~~~~v~~~~~s 559 (660)
...+. ..... +.|..+.+||||..++. . .++.|.+--+. .+.... .+.. .....++.++|.
T Consensus 102 -~~~v~---~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~ 174 (253)
T PF10647_consen 102 -PVEVD---WPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS 174 (253)
T ss_pred -eEEec---ccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence 11111 11110 26999999999999987 3 25677776543 221110 1111 125678999999
Q ss_pred cCCCEEEEEecCC
Q 006126 560 CDGKCIYVSCKSG 572 (660)
Q Consensus 560 ~dg~~l~sg~~dg 572 (660)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9998888766543
No 423
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=5.2 Score=39.04 Aligned_cols=177 Identities=10% Similarity=0.084 Sum_probs=104.8
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126 412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
.+-...+.++.|+|+. .|++..+...-.|+=...|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445568999999999 6666666666666655678888876431 2234467788888888877778888888776653
Q ss_pred eeeceeeeeeeeccCCC-CCCeEEEEEecCCcEEEEEec-CcEEEEeCCCCc-ee--eeecCCC-----CCCCeEEEEEc
Q 006126 490 KLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSIHE-GQIDVYEAPTLN-HT--SQLVPDK-----MDLPITYATYS 559 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~d-~~i~iwd~~~~~-~~--~~~~~~~-----~~~~v~~~~~s 559 (660)
.........+.-+..+. ....-.++|.|....+.+..+ +=+.||.+.... .+ ....... .-..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22111110111111100 146778999999888888743 445555443221 11 1100000 02346677887
Q ss_pred c-CCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 560 C-DGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 560 ~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
+ .+..++-+.+++.+.-.|.. |+.+..+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 5 56677777777888777766 44455544
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.31 E-value=1.6 Score=46.49 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=86.8
Q ss_pred CeEEEEEcCCC-eEEEEe--CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC----CCEEEEEeCCCcEEEEEcCCCe
Q 006126 417 IATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~--~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
++..++|.... .+++.- .+|.+++=| ...+..|+ .|..+.|.|- -..+++......|.+|-+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 56678886443 444432 233333332 12344443 5889999984 3356666778899999986321
Q ss_pred eeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC--ceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126 490 KLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 490 ~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
....+.+. ..-+-..+.+--...+.|+|....|++ .....-.+++++.. +....+. ..+.|.|.||.+||+.|
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRL 170 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEE
Confidence 11111111 011100010012335789999998887 43333345555432 2333342 37889999999999987
Q ss_pred EEEecC-CeEEEEECCCC
Q 006126 566 YVSCKS-GHVKVFDTSTL 582 (660)
Q Consensus 566 ~sg~~d-g~I~iwd~~~~ 582 (660)
+.+-.. =.-+|||-...
T Consensus 171 VVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEeCCeEEEEEecCchh
Confidence 765433 35678986544
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.29 E-value=5.6 Score=41.30 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=93.2
Q ss_pred eEEEEe-CCCeEEEEeCCCC----ceeeEeec---cC----CCeEEEEEeCCCCEEEEEe--CC----CcEEEEEcCCCe
Q 006126 428 LFAFGF-DDSSILVHCPCTK----KTKAKLKG---HQ----NRITCLAYSLSLNVLVSSG--AD----AQLCVWDAVGWK 489 (660)
Q Consensus 428 ~l~s~~-~d~~I~iwd~~~~----~~~~~~~~---~~----~~v~~l~~sp~~~~l~s~s--~d----g~i~vwd~~~~~ 489 (660)
+|+..+ ..+.|+|.|+.+. +..++++. +. .....+..-|+|+.++++- .+ |.+.+.|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 555555 7779999998743 33444432 11 2233445568898888743 22 457888888754
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---------------------cCcEEEEeCCCCceeeeecCCC
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---------------------EGQIDVYEAPTLNHTSQLVPDK 548 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---------------------d~~i~iwd~~~~~~~~~~~~~~ 548 (660)
........ .+.. ..-..+-+.|..+.++++. ..++.+||+.+.+.++++....
T Consensus 169 v~g~We~~---~~~~---~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 169 VKGRWEKD---RGPQ---PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp EEEE--SB----TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred ccceeccC---CCCC---CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 33221111 1111 3455677888888777642 2469999999999999997654
Q ss_pred CCCCeEEEEEc--cCCCEEEEEec-CCeEEEEEC-CCCee--EEEeecccccCCCCc---------CcccceEEEEEecC
Q 006126 549 MDLPITYATYS--CDGKCIYVSCK-SGHVKVFDT-STLEL--RCQINLTAYAQPGTI---------SLELYPLVIAAHPL 613 (660)
Q Consensus 549 ~~~~v~~~~~s--~dg~~l~sg~~-dg~I~iwd~-~~~~~--~~~~~~~~~~~~gh~---------~~~v~~~~v~~sp~ 613 (660)
.......+.|. |+..+=++|+. .++|..|-. ..++- ..++........+-. .-+--++.+..|.
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl- 321 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL- 321 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T-
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc-
Confidence 33345567765 55555444433 445555443 44431 122221111000100 0011256889999
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCC
Q 006126 614 EPNRIA-LGLTNGRVHVIEPLES 635 (660)
Q Consensus 614 d~~~l~-s~s~Dg~v~iw~~~~~ 635 (660)
|.++|. ++-.+|.||.||+...
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SST
T ss_pred CCCEEEEEcccCCcEEEEecCCC
Confidence 556654 5557899999999874
No 426
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.29 E-value=8.2 Score=40.55 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=148.3
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-------CCEEEEEeCC
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 395 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-------~~~l~s~~dg 395 (660)
...++.||..|.++||+........ . ..++.. .-..+|..+..- ...||.-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~--------------~-~lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQP--------------E-DLLLET----QLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCC--------------c-cEEEEE----ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 3589999999999999875443211 0 001110 233455555433 2345555566
Q ss_pred cEEEEECCC--Ce-------EEEEEcCC--CCCeEEEEEcC----CC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126 396 KISIFSLET--FQ-------TLATFANP--PPIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 396 ~I~iwd~~~--~~-------~~~~~~~~--~~~v~~v~~sp----~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
.+.+|.+.. |. .+..+..| ......+++-| .+ .|.+=+.||.+.+|+-+.......+.. ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777777621 11 11111122 22233444433 22 788899999999999665433333433 222
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee---------------ece---eeeeeeeccCCCCCCeEEE---EEec
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------------CSK---FLHSFQTGLVPETTIVNHI---QFHP 517 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~---------------~~~---~~~~~~~~~~~~~~~v~~~---~~sp 517 (660)
.-.+.|.+.-..+++++.+..+..|....-... ..+ +-.+..-| ..+..+ .++.
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS 251 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence 234678888888999999988888876320000 000 00011112 223333 3333
Q ss_pred CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc----cCC---CEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 518 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 518 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~dg---~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
....+++=...++.+.+. +|......+.+ -.+.....|. .++ ..++.++.++.+.||.= .++++.-..
T Consensus 252 ~~~~IvvLger~Lf~l~~-~G~l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l 326 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKD-NGSLRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQL 326 (418)
T ss_pred CCceEEEEecceEEEEcC-CCeEEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCC
Confidence 444455534556666665 56554443321 2222222222 122 25888889999999964 344444332
Q ss_pred ccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 591 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 591 ~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
. ..++.+....|.. -...+++-+++|.+.+-=+.+.....
T Consensus 327 ~--------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 327 P--------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred C--------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccc
Confidence 1 3344443334444 45689999999999998777665443
No 427
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.25 E-value=8.1 Score=40.31 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=109.2
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 461 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~ 461 (660)
+..+..+. +|.|.-.|..+++.+....... ..+.+-.+..+|.++.++.++.++.+|..+|+.+-...... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44455555 8999999999988765443221 22222223336688889999999999998898887776554 11111
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--cCcEEEEeCCCCc
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--d~~i~iwd~~~~~ 539 (660)
-..-.++ .+..++.++.+...|..+|+..-....... .. ..+..-....++..++... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 1222233 334444678888888888765433222210 00 0111111123343333333 4567777777777
Q ss_pred eeeeecCCC--CCCCeEEEEEcc-----CCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 540 HTSQLVPDK--MDLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 540 ~~~~~~~~~--~~~~v~~~~~s~-----dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
..-...... ....+....... .+.-++.++.++.+...|..+++.+..+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 665532110 011110010111 122346777788899999999999998875
No 428
>PRK13684 Ycf48-like protein; Provisional
Probab=94.19 E-value=7.6 Score=39.81 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEE-EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEe
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 534 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd 534 (660)
.+.+.++.+.|++.+++++ ..|.+.. +|-.. ........+.. ..++++.+.++++.++++..|.+.+=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg------~tW~~~~~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQ------TAWTPHQRNSS---RRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCC------CeEEEeeCCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 4578899999988666554 4555442 22111 11110111111 578899999999988888777765433
Q ss_pred CCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 535 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 535 ~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
...+..-...... .....+.++.+.+++..+++| .+|.|. .....|+.-....... +- ....+ .+.|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~~-~~~~~--~~~~~~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----EV-PSNFY--KIVFLD 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----CC-CcceE--EEEEeC
Confidence 3344332221111 013457889999988766655 567664 4445444332222100 10 11233 677765
Q ss_pred CCCCEEEEEeCCCeEEEEeCC
Q 006126 613 LEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
++..++ .+..|.|.-|+-.
T Consensus 313 -~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 313 -PEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred -CCceEE-ECCCceEEEecCC
Confidence 444544 5678988887653
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=0.77 Score=52.27 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=81.3
Q ss_pred CCcEEEEECCCCeEEE-----EEc------CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeEeeccCCCe
Q 006126 394 GGKISIFSLETFQTLA-----TFA------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRI 459 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~-----~~~------~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~~~~~~~~v 459 (660)
+..|..||+++...-. -+. .......++.|+|.= ..+.+..|+.|++.-+..-. .+..+. ....+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence 3478899987532211 111 122334688899977 77888899999888765322 222222 45678
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
++++|+|.|+.++.|-..|++.-|-..-.......... ... + ..|.+++|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e---~--yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEE---N--YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCC---C--cceeEEEEecceeEEEE
Confidence 99999999999999999999998876542111111111 111 1 68999999988888876
No 430
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.82 E-value=3.6 Score=44.45 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=75.7
Q ss_pred EEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCC-CCeEEEEEccCCCEEEEEec-------------CCeEEEEE
Q 006126 513 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 578 (660)
Q Consensus 513 ~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~sg~~-------------dg~I~iwd 578 (660)
+...++|.+++... ..++.+|+ .|+.+..+...... ..=..+..-|+|++|+.+.. ...|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 66778888887644 78888998 57776665442200 01135677799999998772 23477788
Q ss_pred CCCCeeEEEeecccccC-----------------CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccC
Q 006126 579 TSTLELRCQINLTAYAQ-----------------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~-----------------~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~ 641 (660)
.+|+.+..+....... .+...+...+.++.+.|.++.+++|+-.-..|...|..+++.+|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8999998877543321 1122344567899999965666666655668999999999999987
Q ss_pred CCCcccc
Q 006126 642 LPFTDSR 648 (660)
Q Consensus 642 ~~~~~~~ 648 (660)
.++....
T Consensus 310 g~~~~w~ 316 (477)
T PF05935_consen 310 GPPGGWN 316 (477)
T ss_dssp S-STT--
T ss_pred CCCCCCC
Confidence 7775444
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=93.78 E-value=4 Score=44.26 Aligned_cols=172 Identities=9% Similarity=-0.104 Sum_probs=79.8
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC--CeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d--~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~ 470 (660)
.+..||..+++....-.-...........-+| ..+.||.+ .++..||..+++-.. .+....... ++ ..-+|+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~-~~~~g~I 365 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AV-ASINNVI 365 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EE-EEECCEE
Confidence 57778888765433211111111111122456 66677654 368888876653221 111111111 22 2236777
Q ss_pred EEEEeCCC---cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC
Q 006126 471 LVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 471 l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~ 547 (660)
.+.|+.++ .+..||.++.+=....++. ... .. .+++ .-+|+..+.| |.+.+||..+.+-...-...
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~---~~r----~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTY---YPH----YK-SCAL-VFGRRLFLVG--RNAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCC---Ccc----cc-ceEE-EECCEEEEEC--CceEEecCCCCcEeEcCCCC
Confidence 78777653 4678888764311111111 111 01 1222 2345555555 35678888766543221111
Q ss_pred CCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCC
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTL 582 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~ 582 (660)
...... +++ --+|+..+.||.+ ..|..||..++
T Consensus 435 ~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 435 YPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 001112 222 2367777777754 24556666554
No 432
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.75 E-value=8.7 Score=41.57 Aligned_cols=147 Identities=19% Similarity=0.084 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
..+...++|.. |.....+.........+...++|.+++... ..+..+|+.. +......+. .+.. ..=..+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~---~~~~---~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLP---GGYY---DFHHDI 195 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE----B-S-E
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecC---Cccc---cccccc
Confidence 34456666643 555444432222221266778998887655 7888888864 332222222 1000 011257
Q ss_pred EEecCCcEEEEEe--------------cCcEEEEeCCCCceeeeecCCCC-------------------------CCCeE
Q 006126 514 QFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM-------------------------DLPIT 554 (660)
Q Consensus 514 ~~sp~~~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~-------------------------~~~v~ 554 (660)
...|+|++|+.+. ...|..+| .+|+.+..+...+| =..+.
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 7888998888643 12355666 56665544322111 13578
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126 555 YATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 591 (660)
Q Consensus 555 ~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 591 (660)
++.+.+ ++.+++++-.-..|...|..++++...+..+
T Consensus 275 si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 899998 5555555555568999999999999888754
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.74 E-value=7.6 Score=38.22 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=110.6
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeCC------CCc-eeeEeec-----cCCCeEEEEEeCCCC------------EE
Q 006126 417 IATYFILLPQD-LFAFGFDDSSILVHCPC------TKK-TKAKLKG-----HQNRITCLAYSLSLN------------VL 471 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~------~~~-~~~~~~~-----~~~~v~~l~~sp~~~------------~l 471 (660)
.-+.++++|.+ .-++...-+...+||.. ..+ .+-++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34689999999 76777777889999986 122 2223321 224567777764332 36
Q ss_pred EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe-EEEEEec--CCcEEEEE--ecCcEEEEeCCCCcee--eee
Q 006126 472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP--DQIHLLSI--HEGQIDVYEAPTLNHT--SQL 544 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp--~~~~l~~~--~d~~i~iwd~~~~~~~--~~~ 544 (660)
+.+++||+|.-|...-+........-.+..+.. +.| ..+++.. .+.+|+.. ..++|.|||-.=.+.. ..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~---gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ---GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC---cceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 778899999999854322100001110111111 223 2355553 36677764 7899999986422211 011
Q ss_pred cCC---CC--CCCe---------EEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126 545 VPD---KM--DLPI---------TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 545 ~~~---~~--~~~v---------~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
... .. ...| +-..-.++++.=+.|..-|.|-+||+. |.+++++... |.-+. =| .++.
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-----g~LNa-PW--G~a~ 251 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-----GRLNA-PW--GLAI 251 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-----CcccC-Cc--eeee
Confidence 100 00 0011 111112223223334445789999986 6666666421 21122 12 3444
Q ss_pred ec-----CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 611 HP-----LEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 611 sp-----~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.| -.+.+|+---.||+|..+|+.+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 33 135566666679999999999876
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=1.8 Score=44.51 Aligned_cols=155 Identities=10% Similarity=0.096 Sum_probs=97.0
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.|..|.+..+.+...|.+.=|-..+.. +.....+.+. ..++|.++.||+|.+.||.--.+.+|.+++....+....
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 444555555556666667777776533 2223333333 367999999999999999999999999988754432100
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCC
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQ 426 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp~ 426 (660)
+. .++. .....|....|+ ..-+|...+.-+-+|-+... +.++..+.+...|.-..|.++
T Consensus 104 -----------~~--~~ck------~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 104 -----------YT--QECK------TKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred -----------HH--HHhc------cCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccc
Confidence 00 0000 234458888999 77788777776777766543 345556678888888899998
Q ss_pred C--eEEEEe-CCCeEEEEeCCCC
Q 006126 427 D--LFAFGF-DDSSILVHCPCTK 446 (660)
Q Consensus 427 ~--~l~s~~-~d~~I~iwd~~~~ 446 (660)
. .+++.+ ..+++.=+.++++
T Consensus 165 t~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 165 TAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cceEeeeccccccccccEEEeec
Confidence 8 333333 4444444444443
No 435
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=93.60 E-value=0.043 Score=49.55 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 006126 48 ALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD 97 (660)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~ 97 (660)
+.-.++...+-+++.-...|++||++.||+..||.+++.+||+.+++.++
T Consensus 148 ~dp~~v~~~~~~~~~~re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE 197 (199)
T PF06588_consen 148 DDPDIVQPCLQWYNKYREKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLE 197 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCC
Confidence 33455666666677788899999999999999999999999999999874
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.52 E-value=10 Score=38.89 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=40.9
Q ss_pred CCCeEEEEEcc-------CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 550 DLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 550 ~~~v~~~~~s~-------dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
...+..+.|-. .|.++++.-..+.|....+..+..+...... . + .....+..+++.| ||.+.++.+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~--~--~~~~r~~~v~~~p-DG~Lyv~~d 324 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L--G--GFGGRPRDVAQGP-DGALYVSDD 324 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C--T--TSSS-EEEEEEET-TSEEEEEE-
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c--c--cCCCCceEEEEcC-CCeEEEEEC
Confidence 35566677653 4456666655678888887755332221110 0 1 1112355999999 899888888
Q ss_pred CCCeEE
Q 006126 623 TNGRVH 628 (660)
Q Consensus 623 ~Dg~v~ 628 (660)
.+|.|.
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 888764
No 437
>PHA03098 kelch-like protein; Provisional
Probab=93.36 E-value=4.9 Score=44.33 Aligned_cols=182 Identities=10% Similarity=-0.028 Sum_probs=85.9
Q ss_pred eEEEEeCCCCceeeE--eeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 437 SILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 437 ~I~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
.+..||..+++-... +.........+ .-+++.++.|+.+ ..+..||..+.+-....++ .....
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---p~~r~----- 381 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL---IFPRY----- 381 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc---CcCCc-----
Confidence 467788776644221 11111111222 2267777778765 3477788776432111111 11111
Q ss_pred eEEEEEecCCcEEEE-Ee--c----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------CeE
Q 006126 510 VNHIQFHPDQIHLLS-IH--E----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------GHV 574 (660)
Q Consensus 510 v~~~~~sp~~~~l~~-~~--d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------g~I 574 (660)
-.+++. -+++..+. |. + +.+..||..+.+-...-.... ...-.+ +...++...+.|+.+ ..+
T Consensus 382 ~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 382 NPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred cceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEEEECCccCCCCCcccceE
Confidence 112222 24555555 42 1 358899987655432111110 111112 223456666677643 238
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCCCC
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~~~ 644 (660)
.+||..+++-... .... .+.. ....+.+ ++.+++.||.+ +.|.+||+.+. .|...++
T Consensus 459 ~~yd~~~~~W~~~-~~~~-~~r~------~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~ 520 (534)
T PHA03098 459 ESYNPVTNKWTEL-SSLN-FPRI------NASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN--TWTLFCK 520 (534)
T ss_pred EEecCCCCceeeC-CCCC-cccc------cceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC--EEEecCC
Confidence 8899887653322 1110 1111 1112222 56777777754 46888887754 5765443
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.09 E-value=10 Score=38.75 Aligned_cols=174 Identities=14% Similarity=0.069 Sum_probs=94.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCc------EEEEEcCCCe--e-----eeceeeeeeeeccCC--CCCCeEEEEEecCCc
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQ------LCVWDAVGWK--K-----LCSKFLHSFQTGLVP--ETTIVNHIQFHPDQI 520 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~------i~vwd~~~~~--~-----~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~ 520 (660)
-+.+..+.+.|++..+++.+.+|. +..+++.... . .....+. ...+..- .....-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCC
Confidence 356788889876667777788887 6666655410 0 0001111 0011000 001344788888888
Q ss_pred EEEEE-ec------CcEEEEeCCCCceeeeecCC-------------CCCCCeEEEEEccCCCEEEEEec-----CC--e
Q 006126 521 HLLSI-HE------GQIDVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSCK-----SG--H 573 (660)
Q Consensus 521 ~l~~~-~d------~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~dg~~l~sg~~-----dg--~ 573 (660)
++++. .+ ..|+.++.. |+....+... ..+..+-+++++|||+.|+++.+ |+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88886 55 678889875 6665554211 13567889999999996665543 22 1
Q ss_pred -------EEE--EECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-----CCCeEEEEeCC
Q 006126 574 -------VKV--FDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-----TNGRVHVIEPL 633 (660)
Q Consensus 574 -------I~i--wd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-----~Dg~v~iw~~~ 633 (660)
++| ||..+ ++....+......+... .....+..+.+-| ++++|+-== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-PGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccc-cCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence 445 45544 33333333221100000 0123345888888 777766321 23456666554
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=2.2 Score=44.60 Aligned_cols=93 Identities=12% Similarity=0.005 Sum_probs=61.3
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEE---------CCCCee--EEEeecc-cccCCCCcCcccceEEEEEecCC--CC
Q 006126 551 LPITYATYSCDGKCIYVSCKSGHVKVFD---------TSTLEL--RCQINLT-AYAQPGTISLELYPLVIAAHPLE--PN 616 (660)
Q Consensus 551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd---------~~~~~~--~~~~~~~-~~~~~gh~~~~v~~~~v~~sp~d--~~ 616 (660)
-.|..+..++.|..++-.|.+|.+.++= ++.|+. .+..... ...... ...+.+..++|||+. ..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts--s~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS--STSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc--CCceeeeeccccCCccCCc
Confidence 4567788899999999999999765443 123322 1111110 000001 223456689999953 46
Q ss_pred EEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 617 RIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
.|..-+.|.++|||+..+....|-++++.
T Consensus 182 hL~iL~sdnviRiy~lS~~telylqpgep 210 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTELYLQPGEP 210 (741)
T ss_pred eEEEEecCcEEEEEecCCcchhhccCCCc
Confidence 78888899999999999998888877664
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.60 E-value=4.5 Score=42.12 Aligned_cols=147 Identities=15% Similarity=0.049 Sum_probs=76.6
Q ss_pred eEEEEEcCCC-eEEEEe-----------CCC-eEEEEeCCC--Cc--eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 418 ATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~-----------~d~-~I~iwd~~~--~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
...++|.++| ++++-. ..+ .|.+++-.. |+ ....+...-.....+++.++| .++ ++.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 4578899988 444432 223 677776443 32 223443334456889999988 444 4444333
Q ss_pred EEEEcCCCeee--eceeeeeeeecc-CCCCCCeEEEEEecCCcEEEE-Eec-------------------CcEEEEeCCC
Q 006126 481 CVWDAVGWKKL--CSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAPT 537 (660)
Q Consensus 481 ~vwd~~~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~-~~d-------------------~~i~iwd~~~ 537 (660)
++.|....... ....+.+.+... .........++|.|||.+.++ +.. +.|..+|...
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 34354321100 011111111110 000034778999999987776 421 3455556544
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
++ +..+.. . -.....++|+++|+++++-.
T Consensus 174 ~~-~e~~a~-G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GK-LRVVAH-G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred Ce-EEEEec-C-cCCCccceECCCCCEEEEcc
Confidence 33 233322 2 34456899999999877644
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.39 E-value=16 Score=38.29 Aligned_cols=151 Identities=8% Similarity=-0.016 Sum_probs=83.7
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCce--eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
..+..++++ .++.+.....++-||- |.. ...-......+..+.|.+++..++++ .+|.+. |....+..-....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 345566777 5555544433334442 221 11112234568899999998877755 556653 3333332100001
Q ss_pred eeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec-CCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 496 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
+......... ..+.++.|.+++..+++|..|.+.... ..|+.-.... ...-...++.+.|.++++.+++| .+|.|
T Consensus 318 f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 318 FEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred eeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 1111111111 358899999999998889888776664 3444323322 11124678899998777766665 67776
Q ss_pred EEE
Q 006126 575 KVF 577 (660)
Q Consensus 575 ~iw 577 (660)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 544
No 442
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.23 E-value=13 Score=36.74 Aligned_cols=205 Identities=13% Similarity=0.106 Sum_probs=116.2
Q ss_pred eEEEEEe-CCEEEEEe--CCcEEEEECC------CC-eEEEEEcC-----CCCCeEEEEEcCCC-------------eEE
Q 006126 379 ISCFALR-GSHLFSAS--GGKISIFSLE------TF-QTLATFAN-----PPPIATYFILLPQD-------------LFA 430 (660)
Q Consensus 379 v~~v~~s-~~~l~s~~--dg~I~iwd~~------~~-~~~~~~~~-----~~~~v~~v~~sp~~-------------~l~ 430 (660)
-+.++++ +..+..+. .+...+||.. .. ..+-++.. .....+.+.|+... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678888 44444444 5889999986 12 22333332 12345566665321 478
Q ss_pred EEeCCCeEEEEeCCCCce-----eeEee-ccCCCe-EEEEEeC--CCCEEEEE-eCCCcEEEEEcCCCeeee--ceeeee
Q 006126 431 FGFDDSSILVHCPCTKKT-----KAKLK-GHQNRI-TCLAYSL--SLNVLVSS-GADAQLCVWDAVGWKKLC--SKFLHS 498 (660)
Q Consensus 431 s~~~d~~I~iwd~~~~~~-----~~~~~-~~~~~v-~~l~~sp--~~~~l~s~-s~dg~i~vwd~~~~~~~~--~~~~~~ 498 (660)
.+++||+|.-|...-+.. ...+. +..+.| ..+++.. .+.+|..+ -..++|.+||-.-..... ...-..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 899999999998543322 12222 112333 3555543 34555544 357899999865421100 000000
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-E-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc----
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---- 560 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 560 (660)
++.+..| -.|..+ .++..++ . .-|.|-+||+ +|..++++.....-...+.++..|
T Consensus 185 iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 185 LPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 1222211 112111 2333332 2 2357999998 789998886554455666777754
Q ss_pred --CCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 561 --DGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 561 --dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.|.+|+---.||+|..||..+++.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 567787777799999999999987777653
No 443
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.19 E-value=14 Score=37.07 Aligned_cols=157 Identities=9% Similarity=0.035 Sum_probs=81.2
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCe
Q 006126 412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWK 489 (660)
Q Consensus 412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~ 489 (660)
......+..+.-++|| +++++.......-||.-...-...-+.-..+|..|.|.|++...+. ...|.|+.=+.. ..+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3455678888889999 7777766666667875432222222334678999999999877664 478888887722 211
Q ss_pred eeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEE
Q 006126 490 KLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~s 567 (660)
.- ...+... ..+ -.+..++|.+++...+++..|.+. .....|+.=+.... ..-...++.+.|.++.+-++.
T Consensus 220 ~w-~~~~~~~~~~~-----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 220 TW-SEPIIPIKTNG-----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp EE----B-TTSS-------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred cc-ccccCCcccCc-----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 10 1111101 111 348899999998888888777553 34445554333322 112567889999866555555
Q ss_pred EecCCeEEEE
Q 006126 568 SCKSGHVKVF 577 (660)
Q Consensus 568 g~~dg~I~iw 577 (660)
| .+|.|--|
T Consensus 293 G-~~G~ll~~ 301 (302)
T PF14870_consen 293 G-QDGVLLRY 301 (302)
T ss_dssp --STTEEEEE
T ss_pred C-CCcEEEEe
Confidence 5 67877554
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.18 E-value=0.76 Score=43.77 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=52.8
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeece-eeeeeee-------ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeC
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 535 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~ 535 (660)
+..++.+|++.+.+|.+++||+.+++..... .+..+.. ... ..|..+.++.+|.-+++-.+|..+.||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4557889999999999999999997654322 2221222 122 5788899999998888866788899987
Q ss_pred CCCce
Q 006126 536 PTLNH 540 (660)
Q Consensus 536 ~~~~~ 540 (660)
.-+.-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 54433
No 445
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.71 Score=46.49 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=67.7
Q ss_pred cccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc----------HHHHHHHHhcCchHhHHHhhhhhcCCCCCcch
Q 006126 60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----------INYFREYITSGEWDNAEKYLSAFTNMNDNTYS 129 (660)
Q Consensus 60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~----------~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~ 129 (660)
+...+.+.|+.+|..|+...|....+..|-+|+|...+ +.++.+++.+|+-.-|++.+..-...-....+
T Consensus 111 v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s 190 (394)
T KOG2817|consen 111 VDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS 190 (394)
T ss_pred cChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc
Confidence 33355566799999999999999999999999999852 88999999999999998887542111111223
Q ss_pred hhhHHHHHHHHHHHHhhhc
Q 006126 130 AKMFSQIQRQKYLEAVDRQ 148 (660)
Q Consensus 130 ~~~~~~i~~q~~lell~~~ 148 (660)
.-.|. +..+.|++++..+
T Consensus 191 ~LE~~-Lh~l~fl~l~~~g 208 (394)
T KOG2817|consen 191 SLEFK-LHSLHFLSLIRGG 208 (394)
T ss_pred cHHHH-HHHHHHHHHHhcC
Confidence 44555 8999999999988
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.96 E-value=2.7 Score=43.87 Aligned_cols=138 Identities=13% Similarity=0.212 Sum_probs=88.2
Q ss_pred CEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--------eEEEEeCCCeEEEEeCCCC-ceeeEee--
Q 006126 387 SHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCTK-KTKAKLK-- 453 (660)
Q Consensus 387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--------~l~s~~~d~~I~iwd~~~~-~~~~~~~-- 453 (660)
.+|..-+ ...+.-.|++.|+.+..+..|... -+.|.|+. .-++|-.+..|.-.|.+-. ..+....
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 3444433 467888899999999988877665 46777754 2345666777777776642 2222211
Q ss_pred c--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEE
Q 006126 454 G--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 531 (660)
Q Consensus 454 ~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~ 531 (660)
. ......|..-. .+.++++++..|.|++||.-.- ...+...+-. ..|..+..+.+|+++++.....+.
T Consensus 558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~------rAKtalP~lG---~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK------RAKTALPGLG---DAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred hccccccccccccc-cCceEEEecCCCceeeehhhcc------hhhhcCcccc---cceeeeEeecCCcEEEEeecceEE
Confidence 1 11222333222 3458999999999999996541 1122223333 578899999999999987777888
Q ss_pred EEeCC
Q 006126 532 VYEAP 536 (660)
Q Consensus 532 iwd~~ 536 (660)
+.|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88865
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=10 Score=41.80 Aligned_cols=182 Identities=10% Similarity=0.027 Sum_probs=94.9
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe----eccCCCeEEEEEeCCCCEE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l 471 (660)
.|+||+.. |..+..+.-....+-.+.|+.+..|++...+|++++|++- |..+... ......|..+.+..+|-.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa- 141 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA- 141 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE-
Confidence 46677754 5555554433336668999888877888899999999976 3333321 222334555555555533
Q ss_pred EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE--EEEEecCc--EEEEeCC--CCceeeeec
Q 006126 472 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH--LLSIHEGQ--IDVYEAP--TLNHTSQLV 545 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~d~~--i~iwd~~--~~~~~~~~~ 545 (660)
+-..+|.+.+-.-...... .....++... ..-.+-...+++.. ++..-+-. ..++-.. +.+. ..+.
T Consensus 142 -vlt~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~ 213 (829)
T KOG2280|consen 142 -VLTVSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALS 213 (829)
T ss_pred -EEecCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccC
Confidence 3344555544332221100 1111011111 11122222222211 11111100 1111111 1111 1121
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
. ....+..+..||+.++|+--...|.|.+-+.+..+....+..
T Consensus 214 ~--~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 214 W--PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred C--CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1 146788899999999999999999999999888777776653
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=91.87 E-value=11 Score=40.92 Aligned_cols=184 Identities=7% Similarity=-0.015 Sum_probs=85.9
Q ss_pred eEEEEeCCC-----eEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeeceeeee
Q 006126 428 LFAFGFDDS-----SILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 428 ~l~s~~~d~-----~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~ 498 (660)
.+++||.++ .+..||..+++-.. .+.........+ .-+|...+.|+.+ ..+..||..+.+- ..+..
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~~~~ 348 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VNMPS 348 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EECCC
Confidence 455555432 46678877654322 111111111122 2367777777754 3577888765321 11111
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
+.... ... +++ .-+|+..+. |.+ ..+..||.++.+-...-......... + +..-+|+..+.| |.+
T Consensus 349 l~~~r----~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~-~~~~~~~IYv~G---G~~ 417 (480)
T PHA02790 349 LLKPR----CNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C-ALVFGRRLFLVG---RNA 417 (480)
T ss_pred CCCCC----ccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e-EEEECCEEEEEC---Cce
Confidence 11111 011 222 224665555 433 45778998766543221111001111 1 223456666666 357
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceecc
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWG 640 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~ 640 (660)
.+||..+++-... . ....+.. . .. .+.. ++++.+.||.+ .+|..||+.+. +|.
T Consensus 418 e~ydp~~~~W~~~-~-~m~~~r~--~--~~--~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~--~W~ 475 (480)
T PHA02790 418 EFYCESSNTWTLI-D-DPIYPRD--N--PE--LIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTY--SWN 475 (480)
T ss_pred EEecCCCCcEeEc-C-CCCCCcc--c--cE--EEEE---CCEEEEECCcCCCcccceEEEEECCCC--eEE
Confidence 7899877643221 1 1111111 1 11 2222 57888888864 35778888754 454
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.64 E-value=6 Score=44.05 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=66.8
Q ss_pred eEEEEEe----CCEEEEEe-CCcEEEEECCC-------C----e---------EEEEEcCCCCCeEEEEEc--CCC-eEE
Q 006126 379 ISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LFA 430 (660)
Q Consensus 379 v~~v~~s----~~~l~s~~-dg~I~iwd~~~-------~----~---------~~~~~~~~~~~v~~v~~s--p~~-~l~ 430 (660)
|+.+... ...|+.|. ||.|.+|.+++ . . +...+ .....++.++++ ... +||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence 4445444 34566666 79999997632 1 0 00111 224577899998 555 888
Q ss_pred EEeCCCeEEEEeCCCC--ceee-EeeccCCCeEEEEEeCCC---C---EEEEEeCCCcEEEEEc
Q 006126 431 FGFDDSSILVHCPCTK--KTKA-KLKGHQNRITCLAYSLSL---N---VLVSSGADAQLCVWDA 485 (660)
Q Consensus 431 s~~~d~~I~iwd~~~~--~~~~-~~~~~~~~v~~l~~sp~~---~---~l~s~s~dg~i~vwd~ 485 (660)
+++....|.||-.... +... .-..|...|.+|.|-++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888877765432 1111 111266789999997643 2 7888999999999888
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.06 E-value=18 Score=36.13 Aligned_cols=168 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred cEEEEECCCCeEEEEEcCC------CCCeEEEEEcC--C----C-eEEEEeCCCeEEEEeCCCCceeeEeecc-------
Q 006126 396 KISIFSLETFQTLATFANP------PPIATYFILLP--Q----D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------- 455 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~------~~~v~~v~~sp--~----~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~------- 455 (660)
+|.+||+.+++.++++.-+ ...+..+.+.. . + ..++-+..+-|.|+|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778999999988887532 34556676655 1 3 4445555668999999998765544321
Q ss_pred ------------CCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCC-----Ceeeece----eeeeeeeccCCCCCCeE
Q 006126 456 ------------QNRITCLAYSL---SLNVLVSSGADAQLCVWDAVG-----WKKLCSK----FLHSFQTGLVPETTIVN 511 (660)
Q Consensus 456 ------------~~~v~~l~~sp---~~~~l~s~s~dg~i~vwd~~~-----~~~~~~~----~~~~~~~~~~~~~~~v~ 511 (660)
...+..++.+| +|+.|......+. ++|.+.+ ....... .++ ..|..+ +...
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~--~lG~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQ--DLGDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-E--EEEE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccce--eccccC--CCCc
Confidence 12355566655 5556665543322 2233222 1100000 111 112211 2456
Q ss_pred EEEEecCCcEEEE-EecCcEEEEeCCCCc---eeeeecCCCC-CCCeEEEEEcc--CCCEEEEE
Q 006126 512 HIQFHPDQIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKM-DLPITYATYSC--DGKCIYVS 568 (660)
Q Consensus 512 ~~~~sp~~~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~s~--dg~~l~sg 568 (660)
.++++++|..+++ -..+.|..||..+.- ....+..... -..+..+.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 7899999988888 488999999987511 2222322222 35677888888 66655543
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.47 E-value=8.9 Score=42.02 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=85.2
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.-+|.|+.++.+..||.|++|++.......-|. -..+-..+.|...| |+++..|..+.-|.-..--...
T Consensus 20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqq 89 (1636)
T KOG3616|consen 20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQ 89 (1636)
T ss_pred eeecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheeeccCcchhh
Confidence 4666999999999999999999986311111111 12334455565555 5666677777777644311100
Q ss_pred e----eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC
Q 006126 348 E----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANPP 415 (660)
Q Consensus 348 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~ 415 (660)
. .....++..+.|+....++.+. -+.|..+..+ .+.+-... -..|.+-|+.++.....+....
T Consensus 90 fdyndqsekefss~~cdptaqnvvgtl-----cggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g 164 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVVGTL-----CGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKG 164 (1636)
T ss_pred ccccchhhhhccceecCchhhhhhhhh-----ccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCC
Confidence 0 1112233344554443333322 1223333222 22222222 4567777777666554443333
Q ss_pred CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc
Q 006126 416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~ 447 (660)
-.|..+.+-.....+.+....+|.+-|+++.+
T Consensus 165 ~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 165 LAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred cchhhhhhccccceEEeeccccEEEeecccch
Confidence 34444444333344556666678888877654
No 452
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.39 E-value=24 Score=36.46 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=105.0
Q ss_pred EEEcCCC----eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe----CCCCE--EEEEeC-C---CcEEEEEcC
Q 006126 421 FILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNV--LVSSGA-D---AQLCVWDAV 486 (660)
Q Consensus 421 v~~sp~~----~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~--l~s~s~-d---g~i~vwd~~ 486 (660)
|-.+|.. +++....++-+.+||+. |+.++.+. .+.++.+..- -+|+. |+.++. + .+|++|.+.
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence 4445544 67777788899999987 66666664 2344444331 13443 444442 2 469999775
Q ss_pred C--Ceeeeceee-eeeeeccCCCCCCeEEEEEe--c-CCcEEEE--EecCcEEEEeCC---CC----ceeeeecCCCCCC
Q 006126 487 G--WKKLCSKFL-HSFQTGLVPETTIVNHIQFH--P-DQIHLLS--IHEGQIDVYEAP---TL----NHTSQLVPDKMDL 551 (660)
Q Consensus 487 ~--~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s--p-~~~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~~~~ 551 (660)
. +........ ..+..+. ..+..+|+- | +|.+.+. ..+|.+..|-+. ++ +.++.+.. ..
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~----~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~s 208 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDL----SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GS 208 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SS----SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS
T ss_pred CCCCcceEcCCCCccccccc----ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CC
Confidence 3 321110000 0011111 346777764 3 4555444 477877777654 33 35677755 55
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC--EEEEEeCCCeE
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN--RIALGLTNGRV 627 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~--~l~s~s~Dg~v 627 (660)
.+..|..+....+|+.|-++.-|.-|+.+.. .....+... ..++-...+.-+.+-..+ ++. +|+|.-.+++.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~---~g~~l~aDvEGlaly~~~-~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA---DGDGLVADVEGLALYYGS-DGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB---SSSSB-S-EEEEEEEE-C-CC-EEEEEEEGGGTEE
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc---cccccccCccceEEEecC-CCCeEEEEEcCCCCeE
Confidence 7889999988899999999988888887632 111111110 011123344433443334 332 45555577899
Q ss_pred EEEeCCCC
Q 006126 628 HVIEPLES 635 (660)
Q Consensus 628 ~iw~~~~~ 635 (660)
.||+....
T Consensus 285 ~Vy~r~~~ 292 (381)
T PF02333_consen 285 AVYDREGP 292 (381)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99998754
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.32 E-value=26 Score=36.77 Aligned_cols=151 Identities=12% Similarity=0.025 Sum_probs=81.0
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 538 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~ 538 (660)
...+..+++|.+++.+..-..++-||--... ...+. .... ..+.++.+.+++..++++..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~---~~~~---~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHN---RASA---RRIQNMGWRADGGLWLLTRGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEec---CCCc---cceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence 3445567777776665543333344432200 01111 1111 5788999999999998887777544 33344
Q ss_pred c-----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126 539 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 539 ~-----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
+ .............++++.|.+++..+++| .+|.+... ...|+.-....... + .....| .+.|.+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~----~-~~~~ly--~v~f~~- 380 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGAD----N-IAANLY--SVKFFD- 380 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccC----C-CCccee--EEEEcC-
Confidence 3 12222111113458899999887766666 56766555 34444322221000 0 022355 888877
Q ss_pred CCCEEEEEeCCCeEEEE
Q 006126 614 EPNRIALGLTNGRVHVI 630 (660)
Q Consensus 614 d~~~l~s~s~Dg~v~iw 630 (660)
+++-+++ +.+|.|.-|
T Consensus 381 ~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CCceEEE-eCCcEEEEe
Confidence 5555555 578877655
No 454
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.11 E-value=0.45 Score=52.65 Aligned_cols=162 Identities=9% Similarity=0.052 Sum_probs=93.3
Q ss_pred CCCCCeEEEEEe-C--CEEEEEe-CCcEEEEECC--CCeEE-----EEEcCCCCCeEEEEEcC---CC-eEEEEeCCCeE
Q 006126 374 DPKDSISCFALR-G--SHLFSAS-GGKISIFSLE--TFQTL-----ATFANPPPIATYFILLP---QD-LFAFGFDDSSI 438 (660)
Q Consensus 374 ~h~~~v~~v~~s-~--~~l~s~~-dg~I~iwd~~--~~~~~-----~~~~~~~~~v~~v~~sp---~~-~l~s~~~d~~I 438 (660)
+..+.|-.+.|- . ..+. . -|.+.+||+. .|+.. .........+.-+.|.| +. ++..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 566777777776 1 1222 3 3778889875 24322 22233344455666665 44 77777788888
Q ss_pred EEEeCCCCceeeEeeccCCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 439 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~v~~l~-----------~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
++.+..+... ..+.+|...+..++ .+|||+.++.++.||.++.|.+.-...+...+++ ....|+.
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~-- 283 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDK-- 283 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCC--
Confidence 8877654322 44555766655443 5899999999999999999876532222223333 3334442
Q ss_pred CCeEEEEEecC-------Cc--EEEEE--ecCcEEEEeCCCCcee
Q 006126 508 TIVNHIQFHPD-------QI--HLLSI--HEGQIDVYEAPTLNHT 541 (660)
Q Consensus 508 ~~v~~~~~sp~-------~~--~l~~~--~d~~i~iwd~~~~~~~ 541 (660)
.+-.|.-++.. +. +++++ .+..+++|.....+|.
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 22222224332 22 23333 3467899987766665
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.09 E-value=12 Score=41.79 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=85.6
Q ss_pred CCEEEEEeCCcEEEEECCCCeEE------EEEc----------------CCCCCeEEEEEcCCC---eEEEEeCCCeEEE
Q 006126 386 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 440 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~------~~~~----------------~~~~~v~~v~~sp~~---~l~s~~~d~~I~i 440 (660)
.++++.+..+.|.||++..-... ..+. .....|+.+....=| .|+.|.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 67788888999999998642221 1110 011234555444323 8899999999999
Q ss_pred EeCCC-------C----c---------eeeEeeccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 441 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 441 wd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
|.+++ . + +...+. -....++++++ ...+++|+++....|.||-....... ......
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-cccccc
Confidence 96531 0 0 111112 34578899998 77788888888888888766542110 001111
Q ss_pred eeeccCCCCCCeEEEEEecCC-----c-EEEE-EecCcEEEEeC
Q 006126 499 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 535 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~-----~-~l~~-~~d~~i~iwd~ 535 (660)
.... ..|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1223 358899997753 2 4444 57788888777
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.70 E-value=6.6 Score=40.19 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=59.5
Q ss_pred CeEEEEEecCCcEEEEEecCcEEEEeCCCCce---eeeec--CCCCCCCeEEEEEccC---CCEEEEEec-C--------
Q 006126 509 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIYVSCK-S-------- 571 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~---~~~~~--~~~~~~~v~~~~~s~d---g~~l~sg~~-d-------- 571 (660)
..+.|+|.|||+.+++-..|.|++++ ..+.. +..+. ..........++++|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46789999999998887899999999 44443 22221 1123567889999994 334443333 1
Q ss_pred CeEEEEECCCC--e---eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126 572 GHVKVFDTSTL--E---LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 625 (660)
Q Consensus 572 g~I~iwd~~~~--~---~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg 625 (660)
..|.-|....+ . ....+........+ .+... .++|.| ||.+.++.++.+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~--~H~g~--~l~fgp-DG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSG--NHNGG--GLAFGP-DGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSS--SS-EE--EEEE-T-TSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCC--CCCCc--cccCCC-CCcEEEEeCCCC
Confidence 24444554433 1 11111111110111 22223 799999 888777776544
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.58 E-value=0.86 Score=50.57 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=42.1
Q ss_pred EcCCC-eEEEEeCCCeEEEEeC-----CCCceeeEeeccC-CCeEEEEEeCCC---------CEEEEEeC-CCcEEEEEc
Q 006126 423 LLPQD-LFAFGFDDSSILVHCP-----CTKKTKAKLKGHQ-NRITCLAYSLSL---------NVLVSSGA-DAQLCVWDA 485 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~-----~~~~~~~~~~~~~-~~v~~l~~sp~~---------~~l~s~s~-dg~i~vwd~ 485 (660)
.+||| .|+.+..||.++.|.+ ..-.+++.++.|. ++-.|.-++.+. .++++++. +..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 67888 8888888887666653 3335666777776 333343344322 13444443 456899988
Q ss_pred CCCeee
Q 006126 486 VGWKKL 491 (660)
Q Consensus 486 ~~~~~~ 491 (660)
..+++.
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 876654
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.08 E-value=15 Score=39.15 Aligned_cols=112 Identities=14% Similarity=0.033 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEecCC------cEEEEE--e
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI--H 526 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~------~~l~~~--~ 526 (660)
-...+.|+|.|||++|++--..|.|++++..++.......+...... .. .....|+++|+- .+|.++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEec
Confidence 34678899999998777655569999998765432111111111111 12 578899999884 344442 1
Q ss_pred ---------cCcEEEEeCCCC-------ceee-eecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126 527 ---------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 527 ---------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
...|.-|.+... +.+. .+... ....-..+.|.|||.+.++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCcCCceEEECCCCcEEEEECCC
Confidence 223544554311 1111 11111 11223467899999876655543
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.03 E-value=0.056 Score=55.49 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=96.7
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT 537 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~ 537 (660)
-...|-|.+.-++.++.+..+..||-... ..+. ...+ +....++|..++..+++ . ..+.+.+||+.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le----~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE----LNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-----eecc----cCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 34568887777888898999999987652 1111 1111 45667899988888877 4 778999999975
Q ss_pred CceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 538 LNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 538 ~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
... +.+... .+.... +.|++.+..++.|...|.+.|++..+.+.+.+. | .+.-.+++.+|.+ . .
T Consensus 107 eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------G--kh~RRgtq~av~l-E-d 171 (615)
T KOG2247|consen 107 EYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------G--KHQRRGTQIAVTL-E-D 171 (615)
T ss_pred hhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------c--ccccceeEEEecc-c-c
Confidence 432 222221 122222 789999999999988999999998877655443 3 1223355899988 4 4
Q ss_pred EEEEEeCCCeEEE
Q 006126 617 RIALGLTNGRVHV 629 (660)
Q Consensus 617 ~l~s~s~Dg~v~i 629 (660)
+.+.++.|..+.+
T Consensus 172 ~vil~dcd~~L~v 184 (615)
T KOG2247|consen 172 YVILCDCDNTLSV 184 (615)
T ss_pred eeeecCcHHHHHH
Confidence 6667666655443
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.91 E-value=14 Score=31.69 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=66.1
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCc--------eeeEeeccCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEcCC
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~--------~~~~~~~~~~~v~~l~~sp-----~~~~l~s~s~dg~i~vwd~~~ 487 (660)
.|.... .|++++.-+.|.|++..... .+..+. -...|++++-.+ +...|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 444445 78888889999999876432 334443 455677775543 234566655 56788999988
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEec----CCcEEEEEecCcEEEEeCCCCc
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLN 539 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~d~~i~iwd~~~~~ 539 (660)
...+..+.+. ..|+++.+-. +...+++|.+..|.-||..-.+
T Consensus 83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 5433323322 4677777632 3455666777888888874333
No 461
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.84 E-value=24 Score=34.26 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=110.7
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe----eccCCCe
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL----KGHQNRI 459 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~----~~~~~~v 459 (660)
|..-+++. .+.|--.|..+|+..+.--+....-..|..-||| .-++-+.. -|.-.|.++.+.. +| +......
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~nl 150 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADANL 150 (353)
T ss_pred CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCcc
Confidence 33444555 5666677888887766555555555677888888 44433333 5666676655432 22 2233556
Q ss_pred EEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 006126 460 TCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 529 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~ 529 (660)
....|.+.|++-+++... +.|++|+.- .| ...+.|+..|||..-+++ .++.
T Consensus 151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------qG-----~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------QG-----GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred cceeeCCCccEEEeeccccceecCcccCceeeeccC--------------CC-----CCCcceEECCCCcEEEEeccccc
Confidence 778899999888876532 123333321 12 356689999999988886 7778
Q ss_pred EEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 530 IDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
|-..|..++.. ..+.. ......-..+--+|.|..-++-...+.++.||.....
T Consensus 212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 88888877643 23322 1113344456667889888887778899999887654
No 462
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.73 E-value=15 Score=36.73 Aligned_cols=149 Identities=14% Similarity=0.027 Sum_probs=78.3
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-----cEEEEE--ecCcEEEEeCCCCceeeeecCCCC--
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKM-- 549 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~-- 549 (660)
+|.+||+++++.+....+........ +.+..+.+.... .++..+ ..+.|.|+|+.+++..+.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~---s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPD---SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TC---GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEEEECCCCcEEEEEECChHHcccc---cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 67789999987665555442111112 578888887732 344444 446899999998876554432110
Q ss_pred ---------------CCCeEEEEEcc---CCCEEEEEecCCeEEEEECCCC-----eeEEEe-ecccccCCCCcCcccce
Q 006126 550 ---------------DLPITYATYSC---DGKCIYVSCKSGHVKVFDTSTL-----ELRCQI-NLTAYAQPGTISLELYP 605 (660)
Q Consensus 550 ---------------~~~v~~~~~s~---dg~~l~sg~~dg~I~iwd~~~~-----~~~~~~-~~~~~~~~gh~~~~v~~ 605 (660)
...+..++.+| +|++|+-+.-.+ -++|.+.+. ...... ........|.... ..
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~--~s 188 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS--QS 188 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SE
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCC--CC
Confidence 22355566654 556666554332 122332211 100000 0000001121111 12
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 606 LVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
..+++++ +|.++.+--..+.|..|+...
T Consensus 189 ~g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 189 DGMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp CEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred ceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 3788888 788888888999999999886
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.65 E-value=31 Score=35.25 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCe------EEEEeCCC--C--cee-----eEeeccCC--------CeEEEEEeCCCCEE
Q 006126 416 PIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTK-----AKLKGHQN--------RITCLAYSLSLNVL 471 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~~d~~------I~iwd~~~--~--~~~-----~~~~~~~~--------~v~~l~~sp~~~~l 471 (660)
+.+..+.+.+++ .+++.++++. ++.+++.. + ..+ ..+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 456778888665 7777777777 66555543 1 111 11111111 33478887788888
Q ss_pred EEEeCC------CcEEEEEcCCCeeeeceeeeeee--e----ccCCCCCCeEEEEEecCCcEEEEE------ecC--c--
Q 006126 472 VSSGAD------AQLCVWDAVGWKKLCSKFLHSFQ--T----GLVPETTIVNHIQFHPDQIHLLSI------HEG--Q-- 529 (660)
Q Consensus 472 ~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~--~----~~~~~~~~v~~~~~sp~~~~l~~~------~d~--~-- 529 (660)
++.-.+ ..|+.++.. |.......+.... . .........-+++++|+|+.|++. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 876666 778888876 5443333222111 0 000111578899999999955542 232 1
Q ss_pred -----EEE--EeCCC-Cceee--eecCCC-----CCCCeEEEEEccCCCEEEE
Q 006126 530 -----IDV--YEAPT-LNHTS--QLVPDK-----MDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 530 -----i~i--wd~~~-~~~~~--~~~~~~-----~~~~v~~~~~s~dg~~l~s 567 (660)
+++ ||..+ +.... .+.... ....+..+.+-+++++++.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55544 32222 222221 3577888999999997774
No 464
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.60 E-value=1.4 Score=29.25 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCC
Q 006126 457 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 457 ~~v~~l~~sp~~---~~l~s~s~dg~i~vwd~~~ 487 (660)
+.|.++.|+|+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4788877789999999995
No 465
>PRK10115 protease 2; Provisional
Probab=88.50 E-value=51 Score=37.61 Aligned_cols=240 Identities=8% Similarity=0.011 Sum_probs=112.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
-.+..+.+||||++|+.+...+--.-+ .+.+.|..+|..+...+ ...-..++|. ++.|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~----------------~l~v~d~~tg~~l~~~i----~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQY----------------GIRFRNLETGNWYPELL----DNVEPSFVWANDSWTF 186 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEE----------------EEEEEECCCCCCCCccc----cCcceEEEEeeCCCEE
Confidence 346678899999988877553211111 12344555554322111 1111457888 5555
Q ss_pred EEEe-C------CcEEEEECCCC--eEEEEEcCCCCCeE-EEEEcCCC-eEEEEe---CCCeEEEEeCC--CCceeeEee
Q 006126 390 FSAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGF---DDSSILVHCPC--TKKTKAKLK 453 (660)
Q Consensus 390 ~s~~-d------g~I~iwd~~~~--~~~~~~~~~~~~v~-~v~~sp~~-~l~s~~---~d~~I~iwd~~--~~~~~~~~~ 453 (660)
+.+. + ..|..+++.++ +....+........ .+..+.++ .++..+ .++.+.+++.. ++.....+.
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE
Confidence 4443 2 26888888887 44444543333333 33334466 433333 23578888843 343222222
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecC
Q 006126 454 GHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG 528 (660)
Q Consensus 454 ~~~~~v~~l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~ 528 (660)
...+....+. +..+.+++....+ ..|...++... .....+...... ..+..+.+. +..|+. . .++
T Consensus 267 ~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~--~~i~~~~~~--~~~l~~~~~~~g 336 (686)
T PRK10115 267 RRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDE-----QQWEELIPPREN--IMLEGFTLF--TDWLVVEERQRG 336 (686)
T ss_pred CCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCc-----ccCeEEECCCCC--CEEEEEEEE--CCEEEEEEEeCC
Confidence 2222222222 3333333332222 23444444420 111212222121 367778887 335554 3 454
Q ss_pred --cEEEEeCCCCceeeeecCCCCCCCeEEEEEc--cCCC-EEEEEec---CCeEEEEECCCCe
Q 006126 529 --QIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE 583 (660)
Q Consensus 529 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~dg~-~l~sg~~---dg~I~iwd~~~~~ 583 (660)
.++++|...+ .+..+... ....+..+.++ +++. ++++.+. -+.++.+|+.+++
T Consensus 337 ~~~l~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 337 LTSLRQINRKTR-EVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEcCCCC-ceEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4666665433 33444311 12223333444 4444 4444333 3789999998875
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.27 E-value=0.089 Score=54.06 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=95.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|-.......|-|.+.-++.++.+..+..||-..... .. ...++....++|. ++
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------------------le----~n~tg~aldm~wDkegd 87 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------------------LE----LNPTGKALDMAWDKEGD 87 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------------------cc----cCCchhHhhhhhccccc
Confidence 334444556777776688888888887777443322 00 0234445567777 55
Q ss_pred EEEE-Ee-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 388 HLFS-AS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 388 ~l~s-~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.++. +. .+.+.+||+.+..- +.+. +....-.-+.|++.. .++.+...+.+.+++..+.+.+-+.-.|..++++++
T Consensus 88 vlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 88 VLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred hhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence 4433 33 79999999975321 1121 111111226788888 888899999999999887766655555999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEc
Q 006126 464 YSLSLNVLVSSGADAQLCVWDA 485 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~ 485 (660)
|.+.+ +.+.++.|..+.+-..
T Consensus 167 v~lEd-~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 167 VTLED-YVILCDCDNTLSVTTQ 187 (615)
T ss_pred ecccc-eeeecCcHHHHHHhhh
Confidence 99876 4555666665554433
No 467
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.18 E-value=30 Score=40.56 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=67.8
Q ss_pred ceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 006126 365 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 442 (660)
Q Consensus 365 ~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd 442 (660)
..++..+.+..+++|..++=...+|+++....|.+|+++.. ..+.. .--.-++.-....--. +|+.|.--+.|.+.-
T Consensus 1086 ~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~ 1164 (1366)
T KOG1896|consen 1086 NKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLG 1164 (1366)
T ss_pred ceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEE
Confidence 34444444457788888777777888888899999999443 22211 1011112111111222 555555555555544
Q ss_pred CCCC-ceeeEeec--cCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcCC
Q 006126 443 PCTK-KTKAKLKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 443 ~~~~-~~~~~~~~--~~~~v~~l~~sp~~~--~l~s~s~dg~i~vwd~~~ 487 (660)
.... ..+..+.. ..-.++++.|--||. .++++..|+.|++|-..-
T Consensus 1165 fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1165 FQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred EccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 4322 12222211 234577778877665 467788899998886543
No 468
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.07 E-value=28 Score=34.14 Aligned_cols=198 Identities=8% Similarity=-0.071 Sum_probs=109.0
Q ss_pred CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126 416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 493 (660)
Q Consensus 416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~ 493 (660)
.-+..+.++.+ +...+..+.-++|.|+.+...-..... ..+.-.++.. .|++...+..|.-+-+.|+.+.+.
T Consensus 87 ~l~~Dv~vse~-yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss--- 160 (370)
T COG5276 87 DLFADVRVSEE-YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS--- 160 (370)
T ss_pred hhhheeEeccc-EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC---
Confidence 34556666655 566666777899999887543322211 1133344444 688988888777778899987431
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecC
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
..+.-...... ..-..++.| |++-.+ ..|+.+.+.|+.+.... ++.++ .....+.++..+++..+++...
T Consensus 161 P~lagrya~~~---~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~y~vvy~-- 232 (370)
T COG5276 161 PQLAGRYALPG---GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRAYLVVYD-- 232 (370)
T ss_pred ceeeeeeccCC---CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCeeEEEEcc--
Confidence 11111111111 233466666 556665 48899999999764432 22221 1234788888887776766653
Q ss_pred CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
--+.+-|..+.+..+.+... . ...++.+..+.. .+++.-.+..+.-+-+-|+.+..
T Consensus 233 egvlivd~s~~ssp~~~gsy--e----t~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSY--E----TSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred cceEEEecCCCCCceEeecc--c----cCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 34667777765544433211 0 011111111221 35566666666666666665543
No 469
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.99 E-value=16 Score=31.32 Aligned_cols=117 Identities=7% Similarity=0.001 Sum_probs=70.8
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeee---ceeeeeeeeccCCCCCCeEEEEEec-----CCcEEEEEecCcEEEEe
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 534 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~d~~i~iwd 534 (660)
.|......|++++.-|+|.|++........ ...+..+--+ ..|++++-.+ +...|+.|....+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 455555678888888899999876532111 1122211111 3566665443 34567779999999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEcc----CCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~----dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
+.....+.--.. ...|.++.+.. +..++++| .+..|.-||....+..+..
T Consensus 80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhC---ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 987665433222 45577776642 33455555 4677888888777666554
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.98 E-value=3.1 Score=39.61 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=50.0
Q ss_pred EecCCcEEEE-EecCcEEEEeCCCCceeeee------cCC------CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 515 FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL------VPD------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 515 ~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~------~~~------~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+..++.++++ ..+|.+++||+.+++.+..- ... .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4556777777 79999999999988764332 110 1356788899998888777654 57889998775
Q ss_pred CeeE
Q 006126 582 LELR 585 (660)
Q Consensus 582 ~~~~ 585 (660)
+.=+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5433
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.91 E-value=39 Score=35.61 Aligned_cols=151 Identities=9% Similarity=0.040 Sum_probs=82.0
Q ss_pred CCCEEEEEeCCCcEEEEeccCcC-CC-cceeeeecCCCCCCCCeEEEEEec----CCCEEEEEECCCcEEEEeccCCcee
Q 006126 273 DADSAVCAKSLEKSVNLKLQLIN-EP-SECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~~l~~~~h~~~V~~~~~sp----dg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+...|++|+..|.++||+..... .+ ..+.... -..+|..+..-+ .....++.=.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 34689999999999999996422 11 1222322 367888887643 2223334455667777776322110
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCC--CCeEEEEEe-------CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFANPPP 416 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s-------~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~ 416 (660)
...|...+......|. .....++.- .++|..-+ ||.+.+|+-+.....+.+.. .-
T Consensus 111 --------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 111 --------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred --------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 0011100000000121 222233322 13566666 99999999776554444432 11
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeC
Q 006126 417 IATYFILLPQD-LFAFGFDDSSILVHCP 443 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~ 443 (660)
--..+.+.+.. .|++++.+..+..|..
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 11245677766 8888888888887764
No 472
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.36 E-value=35 Score=34.41 Aligned_cols=232 Identities=12% Similarity=-0.042 Sum_probs=113.4
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCc--E
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGK--I 397 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~--I 397 (660)
++++|+.|+.+|...+. +... .+...+. .+...|+++... -+.|++-+|+. +
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~-------------------~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQ-------------------PGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQL 67 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccC-------------------CCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence 34689999998877654 2211 0112221 366789999988 56666666554 9
Q ss_pred EEEECCCCeE---------------EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEe---e
Q 006126 398 SIFSLETFQT---------------LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKL---K 453 (660)
Q Consensus 398 ~iwd~~~~~~---------------~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~---~ 453 (660)
+.+++..-.. ....-.+..+..-+...... .++++....+|.++..... ...+.+ .
T Consensus 68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~ 147 (302)
T smart00036 68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFP 147 (302)
T ss_pred EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccccc
Confidence 9999843221 01111344434333333322 4455555666666533211 111110 0
Q ss_pred -ccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCC--CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecC
Q 006126 454 -GHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 528 (660)
Q Consensus 454 -~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~ 528 (660)
....++..+..+++ ...+..|+..+...++++.. ... ....+........ ....++..-+++.++ .+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~---~~p~~i~~l~~~e~L-lc~~~ 222 (302)
T smart00036 148 LISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETS---LKPISVVQVPRDEFL-LCYDE 222 (302)
T ss_pred CCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccc---cCceEEEEECCCeEE-EEECc
Confidence 01223333333332 45677777653444555533 110 0011110000000 023334444455444 44455
Q ss_pred cEEEEeCCCC-ceee--eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 529 QIDVYEAPTL-NHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 529 ~i~iwd~~~~-~~~~--~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
...+.|.. | +..+ .+. -.....++++. ..+|+.-.. ..|.|+++.+++.++.+.
T Consensus 223 ~~v~Vn~~-G~~~~r~~~l~---w~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 223 FGVFVNLY-GKRRSRNPILH---WEFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELA 279 (302)
T ss_pred EEEEEeCC-CCccccceEEE---cCCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEe
Confidence 55555653 3 2211 221 24556677776 466766654 559999999999888876
No 473
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.25 E-value=3 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCeEEEEEccCC---CEEEEEecCCeEEEEECCC
Q 006126 551 LPITYATYSCDG---KCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 551 ~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~~ 581 (660)
+.|.++.|||+. ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999754 4787777779999999995
No 474
>PRK13684 Ycf48-like protein; Provisional
Probab=87.18 E-value=38 Score=34.70 Aligned_cols=155 Identities=6% Similarity=-0.029 Sum_probs=86.4
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEE-EeCCCCceeeEe-eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 491 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~i-wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~ 491 (660)
...+.++.+.|++ .++++ ..|.+.. +| ..++.-... ..-...++++.+.++++.++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4567889999988 55544 4554443 22 222222222 2344678899999998876654 4676653223332210
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEec
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
..+. ...... ...+.++.+.|++..++++.+|.+.. ....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 249 --~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 249 --SKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111 110100 03578899999988888888886653 3444443333321 1113467788887776666554 6
Q ss_pred CCeEEEEEC
Q 006126 571 SGHVKVFDT 579 (660)
Q Consensus 571 dg~I~iwd~ 579 (660)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 687776653
No 475
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.01 E-value=16 Score=37.84 Aligned_cols=140 Identities=12% Similarity=0.017 Sum_probs=75.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 539 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~ 539 (660)
.+-|. |.+..+.+...|.+.=|-++.... ..++. ...... ++|.++.||+|.+.+++ -.+++|.+++..-.+
T Consensus 27 gvFfD-DaNkqlfavrSggatgvvvkgpnd--DVpiS-fdm~d~---G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 27 GVFFD-DANKQLFAVRSGGATGVVVKGPND--DVPIS-FDMDDK---GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred ceeec-cCcceEEEEecCCeeEEEEeCCCC--CCCce-eeecCC---CceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 34344 333333344455555666554221 12222 111222 68999999999999999 689999999974322
Q ss_pred eeee--ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 540 HTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 540 ~~~~--~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.... .........|...+|+.+ .-+|.....| +-+|.....+..-.+.. ...+++.-..|.| +.+.
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk---------s~~~nvnWy~yc~-et~v 167 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK---------SHNLNVNWYMYCP-ETAV 167 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh---------hcccCccEEEEcc-ccce
Confidence 2111 111112556889999866 4555554444 66666544321111110 1223344788888 5565
Q ss_pred EE
Q 006126 618 IA 619 (660)
Q Consensus 618 l~ 619 (660)
+.
T Consensus 168 ~L 169 (657)
T KOG2377|consen 168 IL 169 (657)
T ss_pred Ee
Confidence 43
No 476
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=33 Score=33.67 Aligned_cols=265 Identities=11% Similarity=0.051 Sum_probs=135.9
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccc
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
+++...+..+.-++|.|+.+...+.+.-.+.+ .+--.++ .-.|++...+.-|.-..+.|+....
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyaygv--~vsGn~aYVadlddgfLivdvsdps--------- 159 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYGV--YVSGNYAYVADLDDGFLIVDVSDPS--------- 159 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-----CceEEEE--EecCCEEEEeeccCcEEEEECCCCC---------
Confidence 56777777888899999998655555544321 1223333 3457888777755444456654432
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCC-e
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD-L 428 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~---~~~~~~~~~~v~~v~~sp~~-~ 428 (660)
+..+..... .....-..++.+|++-..+. |+-+.+-|+..... +... .....+.++..+++- +
T Consensus 160 ---------sP~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 160 ---------SPQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAY 227 (370)
T ss_pred ---------Cceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeE
Confidence 222222111 23344467788888777776 99999999875432 2222 222367777777765 4
Q ss_pred EEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEE-EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 429 FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 429 l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l-~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
++.. +--+.+-|..+.+....+-. ....+.++ .+.-.+++......+.-+.+-|+.+.. -. +..++-+.
T Consensus 228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~------sp-fl~ss~~t 298 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP------SP-FLSSSLDT 298 (370)
T ss_pred EEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC------CC-chhccccC
Confidence 4433 33456667665543333322 12222222 233346677667777777777776621 11 11111100
Q ss_pred CC-CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 507 TT-IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 507 ~~-~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
.+ .-..+..+ +.++.........+-|....+......+ ....+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 299 ~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 299 AGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred CCccccceEEe--cCeeEeccCCceEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 00 11222222 3333333222334444432222111111 1222334444555667888888888888875
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.42 E-value=18 Score=40.14 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=70.9
Q ss_pred EEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCe
Q 006126 420 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK 489 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~ 489 (660)
-+.|..|. +.+++... ..+++|.- .|+.-..-....+.-..+.|-|.|..+++-..|| .|.++..+. -
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-L 283 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-L 283 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-c
Confidence 35565555 55554432 24666652 3432222222333445678999999999877665 355554332 1
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 563 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 563 (660)
......+. .+.. ..+..++|+-....++++..+.+.+|-..+....-.... .-..+.-+.|+|..+
T Consensus 284 rHGef~lr---~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~--~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 284 RHGEFDLR---VGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVER--QIPGISYVKWHPEEK 349 (1243)
T ss_pred ccCCcccc---CCch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEee--cCCCcceeeeccccC
Confidence 10011111 1111 345567787777777777788899998765443222111 133455567777543
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.83 E-value=21 Score=38.04 Aligned_cols=109 Identities=12% Similarity=-0.014 Sum_probs=61.8
Q ss_pred CeEEEEEecCCcEEEEEe-cCcEEEEeCCCCce--eeeec---CCCCCCCeEEEEEccCC------CEEEEEe-------
Q 006126 509 IVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG------KCIYVSC------- 569 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~s~dg------~~l~sg~------- 569 (660)
....|+|.|||+.+++-. .|.|++++..++.. +..+. ..........++++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 577899999999888866 69999998655432 22121 11125678899999874 3455432
Q ss_pred ---cCCeEEEEECCCC--ee---EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 570 ---KSGHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 570 ---~dg~I~iwd~~~~--~~---~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
....|.-|.+... .+ ...+.. .+.+ ..+.-. .++|.| ||.+.++.++.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~---lP~~-~~H~Gg--rI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAG---LPAG-NDHNGG--RLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEec---CCCC-CCcCCc--eEEECC-CCcEEEEECCC
Confidence 1234544554321 11 111211 1111 012222 788999 88877766654
No 479
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=85.51 E-value=0.8 Score=35.39 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 006126 66 EELIYLIHQFLNEEEFKETLHKLEQETRVFFD 97 (660)
Q Consensus 66 ~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~ 97 (660)
.=++-||..||+=+||+.|+..|+-|+|.+-.
T Consensus 19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 19 RLINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 34788999999999999999999999998653
No 480
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.94 E-value=21 Score=33.41 Aligned_cols=58 Identities=29% Similarity=0.317 Sum_probs=39.2
Q ss_pred EecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC
Q 006126 269 TSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT 332 (660)
Q Consensus 269 ~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d 332 (660)
.+.+-| +.|..+...+.|.+|++.+.. -..... ++ .-+.|..+.++..|+||+|--.+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~-~~~~~~--F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEE-CPLLCT--FS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCC-CceeEE--Ec---chhheeEEEeccccceEEEEEee
Confidence 344445 566555777889999998311 112222 33 35899999999999999997653
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.82 E-value=12 Score=41.36 Aligned_cols=94 Identities=9% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC---CceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 315 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS---KLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 315 ~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
..+.|-|+|..+++-+.||.-. +..+..+..++ |.+-. ..+-...+..++|+ ...+
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~----------------S~~ViFfErNGLrHGef~l---r~~~dEk~~~~~wn~~s~vl 310 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCST----------------SESVIFFERNGLRHGEFDL---RVGCDEKAFLENWNLLSTVL 310 (1243)
T ss_pred hccccccCCceeeeeccCCCCC----------------cceEEEEccCCcccCCccc---cCCchhhhhhhhhhHHHHHH
Confidence 3488999999999988664210 11112222211 11100 00334456677787 4455
Q ss_pred EEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 006126 390 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD 427 (660)
Q Consensus 390 ~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~ 427 (660)
+.+..+.+++|-...........-.-..+.-+.|+|..
T Consensus 311 av~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 311 AVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred HHhhcceEEEEEccceEEEEEEeecCCCcceeeecccc
Confidence 55558899999877655443333344567788999976
No 482
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.74 E-value=11 Score=34.51 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=30.1
Q ss_pred eEEEEEecC-----CCCEEEEEeCCCeEEEEeCCCC-ceeccCCC
Q 006126 605 PLVIAAHPL-----EPNRIALGLTNGRVHVIEPLES-EVEWGKLP 643 (660)
Q Consensus 605 ~~~v~~sp~-----d~~~l~s~s~Dg~v~iw~~~~~-~~~w~~~~ 643 (660)
+..++|||. .+.+||+.+.+|.|.||..... ...|....
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~ 132 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVA 132 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeee
Confidence 558999993 1347999999999999998876 66775443
No 483
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=83.64 E-value=1.4 Score=38.95 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHHhhhc
Q 006126 98 INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQ 148 (660)
Q Consensus 98 ~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~lell~~~ 148 (660)
...++++|++|++++|++.+....+.-...-+.. .+.|+.|+|+|++..+
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L-~f~L~~q~fiell~~~ 54 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSL-EFELRCQQFIELLREG 54 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCch-hHHHHHHHHHHHHHHH
Confidence 5678999999999999999865411111111233 3449999999999976
No 484
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.47 E-value=1e+02 Score=36.77 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=49.4
Q ss_pred CCCCCeEEEEEcCCCeEEEEeCCCeEEE--EeCCCC---c-e----------------eeEee-ccCCCeEEEEEeCCCC
Q 006126 413 NPPPIATYFILLPQDLFAFGFDDSSILV--HCPCTK---K-T----------------KAKLK-GHQNRITCLAYSLSLN 469 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~~l~s~~~d~~I~i--wd~~~~---~-~----------------~~~~~-~~~~~v~~l~~sp~~~ 469 (660)
.....|+|+....+|.++.+|.||.|+- |....| + + +-.+. .+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 3456788998777886666666774432 222211 1 1 11223 4667888998887777
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 006126 470 VLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 470 ~l~s~s~dg~i~vwd~~~ 487 (660)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 888888899999999876
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.33 E-value=24 Score=37.16 Aligned_cols=142 Identities=12% Similarity=0.090 Sum_probs=84.8
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEEcCCCe-eeeceeeeee
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVGWK-KLCSKFLHSF 499 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~ 499 (660)
.+..|+....++-.|++.|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+-.. .+...... -
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK-d 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK-D 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh-h
Confidence 4556666678888999999999999877654 456777532 22345556666666665421 11111111 0
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
..+. ....+..-..+| ++++ +..|.|++||-- |...++..+ .-...|..+..+.+|+++++.+. ..+.+-|
T Consensus 559 Y~tK----n~Fss~~tTesG-yIa~as~kGDirLyDRi-g~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 559 YKTK----NKFSSGMTTESG-YIAAASRKGDIRLYDRI-GKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred cccc----ccccccccccCc-eEEEecCCCceeeehhh-cchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 0111 123333333344 5555 788999999953 333333333 23778999999999999888765 4566666
Q ss_pred CC
Q 006126 579 TS 580 (660)
Q Consensus 579 ~~ 580 (660)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 486
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.23 E-value=82 Score=35.10 Aligned_cols=166 Identities=10% Similarity=0.143 Sum_probs=89.9
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec------CCcEEEE-Ee-
Q 006126 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------DQIHLLS-IH- 526 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~~-~~- 526 (660)
-...|-.+.|.++++.+++...+|.|.+||...+....... ....+.. .-+.+ .|-+ ...++++ +.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~---l~~~~~~--~v~ys-~fv~~~~~~~~~~~ll~v~~~ 201 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ---LKLKSSI--NVSYS-KFVNDFELENGKDLLLTVSQL 201 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc---ccccccc--ceehh-hhhcccccccCCceEEEEEEc
Confidence 35688899999999999999999999999994322111111 1112210 01111 2222 2334444 43
Q ss_pred c---CcEEEEeCC-CCceeeeecC-CCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 527 E---GQIDVYEAP-TLNHTSQLVP-DKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 527 d---~~i~iwd~~-~~~~~~~~~~-~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
+ -+.+++.+. +...+..+.. ..+........|.. +|....- .++.|.+|++.+.+....+.......... .
T Consensus 202 ~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~ 278 (670)
T PF10395_consen 202 SNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-D 278 (670)
T ss_pred CCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-c
Confidence 2 257777771 1222222210 01123333444443 4543333 67899999999998888887654433221 1
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
. .+++.|-..++++-+ .+++|++.|+.-.
T Consensus 279 ---~--~vSl~~~s~nRvLLs-~~nkIyLld~~~~ 307 (670)
T PF10395_consen 279 ---D--LVSLKPPSPNRVLLS-VNNKIYLLDLKFE 307 (670)
T ss_pred ---c--ceEeecCCCCeEEEE-cCCEEEEEeehhh
Confidence 1 233333344555544 4678999998654
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.89 E-value=18 Score=37.53 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=85.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeE-EEEEecCCcEEEE-EecCcEEEE-
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLS-IHEGQIDVY- 533 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~-~~d~~i~iw- 533 (660)
..|..+-..|||+.+..-+. ..+.++++.+......+.+. ...+... ..|+ .+..-..|.-+++ ..||.|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~-dspg~~~--~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVD-DSPGDSR--HQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhh-cCCCchH--HHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44566778899998887665 78889988774433222222 1111000 1122 1222223444444 577877666
Q ss_pred eCCCCce-----eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEE
Q 006126 534 EAPTLNH-----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 534 d~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
|++.+.. ++.+.. ...++..+.-..+.+-+++-..+|.+.++.....+.+-.-.. -.... -+
T Consensus 297 dvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---------~~~~~--~~ 363 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---------YQAPQ--LV 363 (733)
T ss_pred eeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---------hcCcc--ee
Confidence 5543221 111111 012222222223345566777778888776555443322111 11122 68
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 609 AAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++|| ++.++++- +.|.++++.+++..
T Consensus 364 ~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSP-NQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eeCc-ccchheee-cCCceEEEEecCCC
Confidence 9999 88998875 56789999988764
No 488
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.75 E-value=18 Score=42.73 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=88.2
Q ss_pred eCCCeEEEEeCCCCceeeEeeccCCCeEEEEE--------eCCCCEEEEEeCCCcEEEEEcCCCeeeecee-e-eeeeec
Q 006126 433 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-L-HSFQTG 502 (660)
Q Consensus 433 ~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~--------sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~-~~~~~~ 502 (660)
+.|+.+.+|+.+++.....+.+....|..+.. -|.=++++..+.--.|.++-+.-.+...... . ....-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998777777776666665543 2222344444444455555443211100000 0 000001
Q ss_pred cCCCCCCeEEEEEecCCcEEEEEecCcEEEEe--CCCC---c-ee----------------eeecCCCCCCCeEEEEEcc
Q 006126 503 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE--APTL---N-HT----------------SQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd--~~~~---~-~~----------------~~~~~~~~~~~v~~~~~s~ 560 (660)
-++ ..|.++....+|+.+++|.||.|+=.- ..++ + +- ..+. ..+..+|..++++.
T Consensus 176 ~dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDN 252 (1311)
T ss_pred cCC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEecc
Confidence 111 568899989999999999888543221 1111 1 10 0111 13467899999998
Q ss_pred CCCEEEEEecCCeEEEEECCC
Q 006126 561 DGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 561 dg~~l~sg~~dg~I~iwd~~~ 581 (660)
..+.+++-++.|+|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999986
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.65 E-value=1e+02 Score=35.76 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee---ccC---C-CCCCeEEEEEecCCcEEEEEecC
Q 006126 457 NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV---P-ETTIVNHIQFHPDQIHLLSIHEG 528 (660)
Q Consensus 457 ~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~---~~~---~-~~~~v~~~~~sp~~~~l~~~~d~ 528 (660)
.+...++|+| +.+.||+....|...|||+..........+. ... |+- + ..+.-..+.|.++...|+++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 4567899998 5568999999999999999322221111111 111 110 0 00234478899998999998889
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccC--CCEEEEEecCCeEEEEECCC
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~I~iwd~~~ 581 (660)
.+.++|+++......+........|..+.-+|+ +..++.. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 999999987765332222223567888888876 3333222 25677777776
No 490
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.99 E-value=58 Score=32.53 Aligned_cols=106 Identities=11% Similarity=-0.060 Sum_probs=59.3
Q ss_pred EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126 440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 519 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 519 (660)
++|+.+++.+.. +. ....+..|+ +|++.++-+..|.+.-+|.++|+......+. +....+.|. |
T Consensus 189 vidv~s~evl~~--GL-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vp----------G~~rGL~f~--G 252 (335)
T TIGR03032 189 VIDIPSGEVVAS--GL-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP----------GFTRGLAFA--G 252 (335)
T ss_pred EEEeCCCCEEEc--Cc-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECC----------CCCccccee--C
Confidence 467666655421 10 111223354 6788888888999999999876532221111 456788888 7
Q ss_pred cEEEEEe-----c----------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 520 IHLLSIH-----E----------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 520 ~~l~~~~-----d----------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
.++++|. + ..|.+.|+++|..+..+.....-..+.++++-|.
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 7777641 1 1255666666665555544322334445554443
No 491
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.74 E-value=26 Score=33.84 Aligned_cols=144 Identities=17% Similarity=0.222 Sum_probs=76.7
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-C--CeEEEEeCCCCceeeEee------ccCCCeEEEEEeCC
Q 006126 398 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCTKKTKAKLK------GHQNRITCLAYSLS 467 (660)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d--~~I~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~ 467 (660)
.+||+.+++....-......+.+-.+-+|| ++.+|+. + ..+++++..+...-..+. .....-.+...-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 478888876533222233333445677899 7777764 2 368888865410000111 12223334556789
Q ss_pred CCEEEEEeCCC-cEEEEEcCCCeeeeceeeeeeee---ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeee
Q 006126 468 LNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 468 ~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~ 543 (660)
|+.|+.|+.+. +..+|.-+.... ....+. +.. ...+ ...-.-+...|+|+.++.+..+ -.|||..+.+.++.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~-~~~~~~-~l~~~~~~~~-~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGP-GPVTLP-FLSQTSDTLP-NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRT 204 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCC-Cceeee-cchhhhccCc-cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEee
Confidence 99999988774 344554422100 001111 000 0000 0122356778999999887554 45779888877666
Q ss_pred ec
Q 006126 544 LV 545 (660)
Q Consensus 544 ~~ 545 (660)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 64
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.42 E-value=84 Score=33.97 Aligned_cols=272 Identities=14% Similarity=0.119 Sum_probs=128.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
..+|..+.+...|. +-.|+.||..+ | |..+++.++.... ....+|..+..+ +..+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL~~-f---------------------d~~~gkalql~s~-~~dk~I~al~~d~qg~L 219 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGLSY-F---------------------DAGRGKALQLASP-PLDKAINALIADVQGRL 219 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcceE-E---------------------ccccceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence 56888898988886 56666676543 3 3333333332211 122456666666 7788
Q ss_pred EEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeecc--CCCeEEEEEeC
Q 006126 390 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL 466 (660)
Q Consensus 390 ~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp 466 (660)
..|+|.-|.+.+.+..+...... -....|..+.-..+|.+-.|+..|..+.--.+.+-.....+.| -+.|.++....
T Consensus 220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence 88888778888776522221111 1223344333333446667777765543333322222222222 23456665555
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCceeee
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~d~~i~iwd~~~~~~~~~ 543 (660)
+|. |-+++.+|.+++-+-. +.. ...+. ...| ..+...+..| .+..+-. -+.|.+.+-+-.+|..+..
T Consensus 300 dGs-LWv~t~~giv~~~~a~-w~~--ma~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s 369 (671)
T COG3292 300 DGS-LWVGTYGGIVRYLTAD-WKR--MAVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS 369 (671)
T ss_pred CCC-EeeeccCceEEEecch-hhh--eeeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence 664 4455656555443221 110 00011 0001 1111222222 1111111 1223344444455655555
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
...- ....|+.+++..+|..-+..-.+| +..|+.++ +-...... |--..++. .+.=.| +++ |-.|+
T Consensus 370 v~q~-Rg~nit~~~~d~~g~lWlgs~q~G-Lsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIGT 436 (671)
T COG3292 370 VHQL-RGMNITTTLEDSRGRLWLGSMQNG-LSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIGT 436 (671)
T ss_pred eeec-cccccchhhhccCCcEEEEecccc-hhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEec
Confidence 4321 256677788877666554444445 55566655 32222221 11122333 566667 455 67777
Q ss_pred CCCeEEE
Q 006126 623 TNGRVHV 629 (660)
Q Consensus 623 ~Dg~v~i 629 (660)
.+|.++.
T Consensus 437 s~Glvk~ 443 (671)
T COG3292 437 SGGLVKR 443 (671)
T ss_pred cCCeEec
Confidence 7776554
No 493
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.39 E-value=5.6 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.3
Q ss_pred cCCcEEEEE--ecCcEEEEeCCCCceeeeecC
Q 006126 517 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 517 p~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~ 546 (660)
|++++|+++ .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577877774 578999999999888888765
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.48 E-value=29 Score=33.47 Aligned_cols=144 Identities=10% Similarity=0.078 Sum_probs=76.6
Q ss_pred EEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEEEcCCCe--eeeceeeeeeeeccCCCCCCeEEE
Q 006126 439 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D--AQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 439 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d--g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
.+||+.+++....-........+-.+.+||+++.+|+. + ..+++++..... .........+..+ -+-.++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-----RWYpT~ 123 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-----RWYPTA 123 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-----Cccccc
Confidence 58898887543221112222223357789999998875 2 358888764400 0000000001111 245567
Q ss_pred EEecCCcEEEEE-ec-CcEEEEeCCCC--ceee-eecCC----CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126 514 QFHPDQIHLLSI-HE-GQIDVYEAPTL--NHTS-QLVPD----KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 514 ~~sp~~~~l~~~-~d-~~i~iwd~~~~--~~~~-~~~~~----~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~ 584 (660)
..-|||+.|++| .. .+..+|.-... .... .+... ....---.+-..|||+.++.+..++. |||..+.+.
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v 201 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTV 201 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeE
Confidence 778899999985 33 35566664321 1111 11110 00111123555699999999876544 578888877
Q ss_pred EEEee
Q 006126 585 RCQIN 589 (660)
Q Consensus 585 ~~~~~ 589 (660)
+..+.
T Consensus 202 ~~~lP 206 (243)
T PF07250_consen 202 VRTLP 206 (243)
T ss_pred EeeCC
Confidence 66655
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.77 E-value=3.9 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeccC
Q 006126 616 NRIALGLTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~~~~w~~ 641 (660)
..+..++.+|.+..+|..+|+.+|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36777889999999999999999974
No 496
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.76 E-value=97 Score=33.10 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=48.1
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeC---------CCCcee---eEe-------e-ccCCCeEEEEEeCCC---CEEE
Q 006126 417 IATYFILLPQD-LFAFGFDDSSILVHCP---------CTKKTK---AKL-------K-GHQNRITCLAYSLSL---NVLV 472 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~---------~~~~~~---~~~-------~-~~~~~v~~l~~sp~~---~~l~ 472 (660)
.|..+..++.| .++-.|.+|.+.++=. +.|+.. +++ . ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 35677889999 8888888886654431 233221 111 1 112235578899975 6788
Q ss_pred EEeCCCcEEEEEcCCCe
Q 006126 473 SSGADAQLCVWDAVGWK 489 (660)
Q Consensus 473 s~s~dg~i~vwd~~~~~ 489 (660)
.-+.|..||+||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999998744
No 497
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.93 E-value=62 Score=30.40 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred EEEcCCCeEEEEeCCCeEEEEeCCC--CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC------cEEEE---EcCCCe
Q 006126 421 FILLPQDLFAFGFDDSSILVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA------QLCVW---DAVGWK 489 (660)
Q Consensus 421 v~~sp~~~l~s~~~d~~I~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg------~i~vw---d~~~~~ 489 (660)
+.-.+.+.|+.+...+.|.+|++.+ .+...+|.. -+.|..+.++..|+++++--.+. .+|+| +.....
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 3334434333336677899999883 345566653 47899999999999999854332 45553 333110
Q ss_pred eeeceeeeeeeeccC------------------CCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce-ee-----eec
Q 006126 490 KLCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-TS-----QLV 545 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~------------------~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~-~~-----~~~ 545 (660)
..++.....||. |.+..+.+++..|-.--|++|.++.+.+|.+..... .. .+.
T Consensus 102 ---~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe 178 (215)
T PF14761_consen 102 ---NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFE 178 (215)
T ss_pred ---CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEech
Confidence 011110111110 112467778888866667777788899998754332 11 110
Q ss_pred C---CCC-CCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 546 P---DKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 546 ~---~~~-~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
. ..| +.....++|. +.|+|..+ +-.++++.+
T Consensus 179 ~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 179 RSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 0 001 2224445554 56777765 445666654
No 498
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=77.81 E-value=55 Score=36.09 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=76.2
Q ss_pred CCeEEEEEecCCcEEEEEec--C----cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEE
Q 006126 508 TIVNHIQFHPDQIHLLSIHE--G----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKV 576 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~~~d--~----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~i 576 (660)
..+-.++.|||+++++-+.| | ++++-|+.++..+.... .....+++|.+|++.++-...|. .|.-
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 35667899999999997633 2 59999999988654331 34466889999998777665542 2333
Q ss_pred EECCC--CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCceeccCCCCcccc
Q 006126 577 FDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESEVEWGKLPFTDSR 648 (660)
Q Consensus 577 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D---g~v~iw~~~~~~~~w~~~~~~~~~ 648 (660)
..+.+ ..-...+. ..+..+-++|.-+- +..+|+....| +.+++.+....+..+....|.+.|
T Consensus 205 h~~gt~~~~d~lvye---------E~d~~f~~~v~~s~-s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 205 HRLGTPGSSDELVYE---------EKDDRFFLSVGRSR-SEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred EecCCCCCcceEEEE---------cCCCcEEEEeeecc-CCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 33333 11111111 12222333444444 45565554433 467888888877777766666655
No 499
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.98 E-value=97 Score=32.14 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=104.1
Q ss_pred cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE------eCCE--EEEE
Q 006126 321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------RGSH--LFSA 392 (660)
Q Consensus 321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~------s~~~--l~s~ 392 (660)
|...+++....++-+.+||++....... . .+..+.+.. .|+. |+.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~-------------~-------------~Gr~NNVDvrygf~l~g~~vDlava 119 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSL-------------P-------------VGRPNNVDVRYGFPLNGKTVDLAVA 119 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE---------------------------SS-EEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEee-------------c-------------CCCcceeeeecceecCCceEEEEEE
Confidence 4556777788888898888876643111 1 112222222 2332 4555
Q ss_pred e--C---CcEEEEECC--CCeEEEEEcC-------CCCCeEEEEE--cC-CC--eEEEEeCCCeEEEEeCC---CC----
Q 006126 393 S--G---GKISIFSLE--TFQTLATFAN-------PPPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC---TK---- 446 (660)
Q Consensus 393 ~--d---g~I~iwd~~--~~~~~~~~~~-------~~~~v~~v~~--sp-~~--~l~s~~~d~~I~iwd~~---~~---- 446 (660)
+ + ..|++|.+. ++. +..+.. ....+..+++ +| +| +++....+|.+..|-+. .+
T Consensus 120 s~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~ 198 (381)
T PF02333_consen 120 SDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA 198 (381)
T ss_dssp EE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred ecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence 4 2 368999775 343 333321 1123555555 44 45 77778889988777654 33
Q ss_pred ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CC-cEEE
Q 006126 447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQ-IHLL 523 (660)
Q Consensus 447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~-~~l~ 523 (660)
+.++.|.. .+.+-.|.......+|..+-++.-|.-|+.+.........+......+- ...|-.+++-. ++ .||+
T Consensus 199 ~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l--~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGL--VADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp EEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-CCC-EEEE
T ss_pred EEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccc--ccCccceEEEecCCCCeEEE
Confidence 34666764 4578888899888899999999888888887432211222221111111 14677777743 43 3666
Q ss_pred E-E-ecCcEEEEeCCC
Q 006126 524 S-I-HEGQIDVYEAPT 537 (660)
Q Consensus 524 ~-~-~d~~i~iwd~~~ 537 (660)
+ + .+++..|||.+.
T Consensus 276 vSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCeEEEEecCC
Confidence 6 4 677899999864
No 500
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.32 E-value=14 Score=33.63 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEEcCC
Q 006126 457 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 457 ~~v~~l~~sp~~------~~l~s~s~dg~i~vwd~~~ 487 (660)
..+..++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 3688899999999997664
Done!