Query 006126
Match_columns 660
No_of_seqs 761 out of 4287
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:40:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 3E-48 1E-52 412.0 41.1 280 309-633 106-410 (410)
2 1nr0_A Actin interacting prote 100.0 2.2E-44 7.5E-49 402.4 46.6 365 241-636 48-569 (611)
3 1nr0_A Actin interacting prote 100.0 7.2E-43 2.4E-47 390.2 45.4 339 268-633 196-610 (611)
4 3ow8_A WD repeat-containing pr 100.0 1.3E-41 4.5E-46 348.4 42.4 282 309-633 30-320 (321)
5 2ymu_A WD-40 repeat protein; u 100.0 5.2E-41 1.8E-45 372.8 49.2 327 267-631 226-577 (577)
6 1got_B GT-beta; complex (GTP-b 100.0 3.8E-41 1.3E-45 348.2 44.0 280 309-631 53-340 (340)
7 1got_B GT-beta; complex (GTP-b 100.0 1.2E-40 4.2E-45 344.3 44.0 290 243-578 46-340 (340)
8 4g56_B MGC81050 protein; prote 100.0 1.1E-41 3.7E-46 354.5 35.8 321 269-636 12-345 (357)
9 4gqb_B Methylosome protein 50; 100.0 5.3E-41 1.8E-45 346.8 37.3 289 310-636 29-333 (344)
10 2ynn_A Coatomer subunit beta'; 100.0 4E-40 1.4E-44 334.8 40.2 281 310-634 12-302 (304)
11 3ow8_A WD repeat-containing pr 100.0 4.9E-40 1.7E-44 336.7 40.4 286 245-580 25-320 (321)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-40 1.1E-44 341.7 39.1 295 310-637 14-338 (345)
13 1vyh_C Platelet-activating fac 100.0 3E-40 1E-44 350.5 39.6 380 60-580 3-410 (410)
14 2pbi_B Guanine nucleotide-bind 100.0 7.6E-40 2.6E-44 340.2 41.6 280 309-631 62-354 (354)
15 3frx_A Guanine nucleotide-bind 100.0 9E-40 3.1E-44 334.6 40.5 292 309-635 15-318 (319)
16 2pbi_B Guanine nucleotide-bind 100.0 2E-39 6.9E-44 337.0 40.3 291 244-578 56-354 (354)
17 2ymu_A WD-40 repeat protein; u 100.0 2E-38 6.7E-43 352.1 50.7 345 241-634 46-457 (577)
18 3iz6_a 40S ribosomal protein R 100.0 2.7E-40 9.4E-45 347.2 33.2 305 242-583 56-377 (380)
19 3frx_A Guanine nucleotide-bind 100.0 3.3E-39 1.1E-43 330.4 40.4 290 246-582 11-318 (319)
20 1r5m_A SIR4-interacting protei 100.0 4.9E-39 1.7E-43 341.7 42.9 320 268-633 51-424 (425)
21 4ery_A WD repeat-containing pr 100.0 1.4E-38 4.7E-43 324.7 44.2 283 309-633 21-311 (312)
22 1gxr_A ESG1, transducin-like e 100.0 9.1E-39 3.1E-43 328.7 42.6 314 268-632 15-335 (337)
23 3iz6_a 40S ribosomal protein R 100.0 1E-39 3.5E-44 342.9 32.8 290 309-636 64-377 (380)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-38 5.3E-43 329.2 40.6 293 267-587 21-341 (345)
25 2pm9_A Protein WEB1, protein t 100.0 6.3E-40 2.2E-44 348.3 28.1 331 268-635 18-415 (416)
26 4gqb_B Methylosome protein 50; 100.0 2.5E-38 8.6E-43 326.7 38.7 279 268-583 36-333 (344)
27 2xzm_R RACK1; ribosome, transl 100.0 6.7E-38 2.3E-42 324.2 41.1 292 309-635 19-341 (343)
28 2hes_X YDR267CP; beta-propelle 100.0 6E-38 2E-42 322.7 40.4 290 309-634 12-328 (330)
29 4g56_B MGC81050 protein; prote 100.0 1.5E-38 5.2E-43 330.7 36.2 281 268-583 48-345 (357)
30 2ynn_A Coatomer subunit beta'; 100.0 1.1E-37 3.7E-42 316.9 40.0 272 268-581 19-302 (304)
31 1erj_A Transcriptional repress 100.0 1.3E-37 4.3E-42 328.5 41.4 304 310-635 63-390 (393)
32 2xzm_R RACK1; ribosome, transl 100.0 1.6E-37 5.5E-42 321.3 41.3 293 244-583 13-342 (343)
33 4aow_A Guanine nucleotide-bind 100.0 3.9E-37 1.3E-41 317.2 42.5 292 246-583 32-339 (340)
34 2hes_X YDR267CP; beta-propelle 100.0 2.3E-37 7.8E-42 318.4 39.9 301 244-581 6-328 (330)
35 1pgu_A Actin interacting prote 100.0 1.2E-36 3.9E-41 340.2 48.8 341 268-634 24-614 (615)
36 3vl1_A 26S proteasome regulato 100.0 5.6E-38 1.9E-42 333.9 35.3 322 268-634 62-419 (420)
37 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-37 1.1E-41 357.6 42.9 349 266-636 62-666 (902)
38 4aow_A Guanine nucleotide-bind 100.0 2.1E-36 7.4E-41 311.6 44.1 296 304-636 33-339 (340)
39 2oaj_A Protein SNI1; WD40 repe 100.0 2.6E-37 8.7E-42 358.2 41.1 346 267-637 22-608 (902)
40 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.6E-36 2.9E-40 319.9 47.7 312 269-635 124-443 (445)
41 4ery_A WD repeat-containing pr 100.0 7.3E-36 2.5E-40 304.4 43.6 275 268-580 29-311 (312)
42 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-36 3.9E-41 368.3 42.0 343 268-641 705-1165(1249)
43 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-36 1.6E-40 363.0 46.5 323 267-639 620-1039(1249)
44 3dm0_A Maltose-binding peripla 100.0 3.9E-36 1.3E-40 341.1 42.5 293 309-633 380-692 (694)
45 1erj_A Transcriptional repress 100.0 6.6E-36 2.2E-40 315.3 40.9 279 268-582 70-390 (393)
46 3zwl_B Eukaryotic translation 100.0 3.5E-35 1.2E-39 305.8 42.4 290 300-637 23-349 (369)
47 3dm0_A Maltose-binding peripla 100.0 1.6E-35 5.5E-40 336.1 41.6 289 247-581 377-693 (694)
48 3gre_A Serine/threonine-protei 100.0 1.6E-36 5.3E-41 324.8 29.4 320 269-631 34-437 (437)
49 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-37 2.5E-41 332.0 26.3 326 270-634 169-517 (524)
50 1gxr_A ESG1, transducin-like e 100.0 2.1E-34 7.1E-39 296.0 43.4 274 268-579 57-335 (337)
51 3ei3_B DNA damage-binding prot 100.0 3.4E-35 1.2E-39 308.6 38.1 285 309-634 71-382 (383)
52 1sq9_A Antiviral protein SKI8; 100.0 2.4E-35 8.1E-40 311.1 36.8 295 309-636 14-397 (397)
53 3v7d_B Cell division control p 100.0 2.9E-34 9.8E-39 309.7 45.6 304 269-631 127-460 (464)
54 4a11_B DNA excision repair pro 100.0 7.5E-35 2.6E-39 307.8 39.5 325 268-634 49-405 (408)
55 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-35 1.4E-39 306.1 36.3 298 310-638 7-365 (372)
56 4e54_B DNA damage-binding prot 100.0 8.6E-36 2.9E-40 318.9 31.6 290 310-638 118-434 (435)
57 4h5i_A Guanine nucleotide-exch 100.0 8.5E-35 2.9E-39 303.3 37.7 293 311-635 14-344 (365)
58 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-34 6.3E-39 333.6 43.3 323 268-635 19-387 (814)
59 1r5m_A SIR4-interacting protei 100.0 7.9E-35 2.7E-39 309.2 36.5 296 309-636 43-363 (425)
60 3k26_A Polycomb protein EED; W 100.0 3.8E-35 1.3E-39 305.2 33.3 290 309-633 16-365 (366)
61 3i2n_A WD repeat-containing pr 100.0 3.2E-35 1.1E-39 304.9 32.6 284 310-636 17-355 (357)
62 3zwl_B Eukaryotic translation 100.0 4.3E-34 1.5E-38 297.5 40.6 278 268-588 38-353 (369)
63 3odt_A Protein DOA1; ubiquitin 100.0 3.6E-34 1.2E-38 291.2 38.7 291 243-589 9-304 (313)
64 3ei3_B DNA damage-binding prot 100.0 3.9E-34 1.3E-38 300.6 39.3 284 268-581 79-382 (383)
65 2pm9_A Protein WEB1, protein t 100.0 2.1E-35 7.3E-40 313.3 29.5 291 311-637 12-340 (416)
66 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-34 7.6E-39 300.5 36.5 279 268-583 14-363 (372)
67 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-33 6.1E-38 286.0 42.2 276 309-638 16-300 (313)
68 4aez_A CDC20, WD repeat-contai 100.0 6.2E-34 2.1E-38 301.1 40.3 280 270-588 99-387 (401)
69 4e54_B DNA damage-binding prot 100.0 2.4E-35 8.2E-40 315.4 29.6 286 268-585 125-434 (435)
70 3dwl_C Actin-related protein 2 100.0 1.2E-35 4.2E-40 311.1 26.6 291 310-632 10-377 (377)
71 4aez_A CDC20, WD repeat-contai 100.0 3.2E-34 1.1E-38 303.3 37.6 285 310-640 90-386 (401)
72 3vl1_A 26S proteasome regulato 100.0 1.8E-34 6.2E-39 306.8 34.9 285 312-635 57-366 (420)
73 3k26_A Polycomb protein EED; W 100.0 2.3E-34 7.9E-39 299.4 33.8 283 268-581 24-366 (366)
74 4gga_A P55CDC, cell division c 100.0 1.9E-33 6.6E-38 299.2 41.2 280 267-588 110-402 (420)
75 4gga_A P55CDC, cell division c 100.0 7.9E-33 2.7E-37 294.5 43.6 284 311-637 105-398 (420)
76 3gre_A Serine/threonine-protei 100.0 4.9E-34 1.7E-38 305.4 34.1 309 241-578 51-437 (437)
77 3i2n_A WD repeat-containing pr 100.0 3.3E-34 1.1E-38 297.3 31.3 282 268-584 24-356 (357)
78 1sq9_A Antiviral protein SKI8; 100.0 1.1E-33 3.8E-38 298.3 35.5 282 269-583 23-397 (397)
79 4a11_B DNA excision repair pro 100.0 9.8E-34 3.3E-38 299.2 34.7 324 283-638 22-369 (408)
80 3v7d_B Cell division control p 100.0 1.5E-32 5.1E-37 296.2 44.4 278 310-640 120-427 (464)
81 3mkq_A Coatomer beta'-subunit; 100.0 6.5E-33 2.2E-37 320.6 44.2 311 268-633 61-422 (814)
82 2pm7_B Protein transport prote 100.0 4E-33 1.4E-37 282.2 35.6 247 309-581 7-285 (297)
83 3dw8_B Serine/threonine-protei 100.0 1.2E-33 4.1E-38 303.0 33.4 303 310-632 27-444 (447)
84 4ggc_A P55CDC, cell division c 100.0 1.7E-32 5.8E-37 279.6 40.3 280 313-636 27-317 (318)
85 4ggc_A P55CDC, cell division c 100.0 1.9E-32 6.4E-37 279.3 40.2 274 268-583 31-317 (318)
86 3dwl_C Actin-related protein 2 100.0 3.3E-34 1.1E-38 300.3 27.2 280 268-579 17-377 (377)
87 2pm7_B Protein transport prote 100.0 4.2E-33 1.4E-37 282.0 33.4 248 374-640 7-290 (297)
88 4h5i_A Guanine nucleotide-exch 100.0 2.1E-33 7.3E-38 292.7 31.0 289 268-582 20-344 (365)
89 1yfq_A Cell cycle arrest prote 100.0 8.1E-33 2.8E-37 285.2 35.0 279 309-631 9-321 (342)
90 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5.1E-37 293.8 36.4 280 310-645 132-425 (435)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.6E-31 5.6E-36 286.6 43.2 278 310-639 117-396 (445)
92 3bg1_A Protein SEC13 homolog; 100.0 2.5E-33 8.5E-38 286.3 26.3 256 374-649 11-307 (316)
93 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-32 5.2E-37 290.6 28.3 292 268-623 21-350 (588)
94 3bg1_A Protein SEC13 homolog; 100.0 1.7E-32 5.9E-37 280.1 27.7 243 309-580 11-292 (316)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-32 2E-36 286.0 31.3 289 268-585 40-346 (402)
96 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-31 5.6E-36 285.7 35.0 269 269-588 138-421 (435)
97 3dw8_B Serine/threonine-protei 100.0 1E-31 3.5E-36 287.9 32.5 302 267-580 33-445 (447)
98 1yfq_A Cell cycle arrest prote 100.0 1.7E-31 6E-36 275.2 33.0 276 268-578 17-321 (342)
99 3jrp_A Fusion protein of prote 100.0 5.6E-31 1.9E-35 275.1 36.0 248 309-582 9-288 (379)
100 3mmy_A MRNA export factor; mRN 100.0 4E-31 1.4E-35 274.9 33.5 280 309-633 37-345 (368)
101 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-31 3E-35 269.6 34.6 253 309-589 9-345 (351)
102 3f3f_A Nucleoporin SEH1; struc 100.0 8.4E-31 2.9E-35 269.8 34.4 250 374-637 9-340 (351)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-31 7.1E-36 281.8 30.4 288 312-637 35-345 (402)
104 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-32 7.9E-37 296.6 23.5 279 266-581 211-517 (524)
105 1pgu_A Actin interacting prote 100.0 2.5E-30 8.4E-35 288.8 40.3 291 309-639 16-333 (615)
106 3jrp_A Fusion protein of prote 100.0 8.2E-31 2.8E-35 273.9 31.3 247 374-635 9-288 (379)
107 3bws_A Protein LP49; two-domai 100.0 2E-29 6.8E-34 269.1 40.4 280 311-634 122-432 (433)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.6E-30 1.6E-34 275.7 35.4 301 311-640 4-397 (450)
109 3mmy_A MRNA export factor; mRN 100.0 3.4E-30 1.1E-34 267.9 32.2 292 242-580 29-345 (368)
110 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-31 1.7E-35 279.1 25.3 265 310-633 14-296 (588)
111 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-30 1.8E-34 266.1 32.5 285 310-636 18-338 (355)
112 3lrv_A PRE-mRNA-splicing facto 100.0 4.1E-30 1.4E-34 265.7 29.9 281 269-635 43-334 (343)
113 1l0q_A Surface layer protein; 100.0 1.9E-28 6.4E-33 257.8 42.3 316 275-637 3-345 (391)
114 3vu4_A KMHSV2; beta-propeller 100.0 1.7E-29 6E-34 262.2 32.1 282 244-582 11-337 (355)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.1E-29 2.1E-33 267.0 31.8 243 310-580 101-390 (450)
116 2xyi_A Probable histone-bindin 100.0 6.4E-29 2.2E-33 265.1 31.3 244 374-636 126-412 (430)
117 2xyi_A Probable histone-bindin 100.0 1.7E-28 5.8E-33 261.8 33.8 251 310-583 127-412 (430)
118 4gq1_A NUP37; propeller, trans 100.0 3.4E-29 1.2E-33 263.8 27.3 300 311-632 15-387 (393)
119 3jro_A Fusion protein of prote 100.0 2.1E-29 7.2E-34 287.7 27.3 248 374-636 7-287 (753)
120 3jro_A Fusion protein of prote 100.0 4.9E-29 1.7E-33 284.7 30.1 248 309-582 7-286 (753)
121 1l0q_A Surface layer protein; 100.0 5.5E-27 1.9E-31 246.5 39.0 265 324-639 3-280 (391)
122 3bws_A Protein LP49; two-domai 100.0 3.3E-27 1.1E-31 251.8 35.4 274 266-581 126-432 (433)
123 2w18_A PALB2, fancn, partner a 100.0 4.7E-27 1.6E-31 233.9 31.4 236 379-632 42-355 (356)
124 2w18_A PALB2, fancn, partner a 100.0 3.1E-27 1.1E-31 235.1 29.1 272 276-579 56-355 (356)
125 3lrv_A PRE-mRNA-splicing facto 100.0 5.5E-28 1.9E-32 249.7 24.7 236 386-641 48-299 (343)
126 4gq1_A NUP37; propeller, trans 100.0 1.7E-27 5.7E-32 250.9 26.4 284 271-579 27-387 (393)
127 1nir_A Nitrite reductase; hemo 100.0 4.8E-26 1.6E-30 248.9 38.6 329 269-641 144-521 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-24 3.5E-29 231.1 31.0 289 269-613 69-408 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-24 4.5E-29 248.4 34.3 321 266-637 40-462 (741)
130 1k32_A Tricorn protease; prote 99.9 2.2E-24 7.4E-29 255.5 33.8 331 267-637 57-464 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-24 5.6E-29 229.5 28.0 277 311-636 62-389 (415)
132 1nir_A Nitrite reductase; hemo 99.9 8.6E-23 2.9E-27 223.1 34.8 297 267-589 183-522 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-23 4.5E-28 239.4 29.6 322 268-636 22-445 (723)
134 1k32_A Tricorn protease; prote 99.9 1.1E-22 3.6E-27 241.0 34.7 312 266-636 248-639 (1045)
135 1ri6_A Putative isomerase YBHE 99.9 3.3E-22 1.1E-26 205.4 34.1 278 276-585 7-314 (343)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-22 4.1E-27 230.8 33.1 319 269-636 32-437 (706)
137 3u4y_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 199.9 37.2 286 317-640 3-310 (331)
138 3vgz_A Uncharacterized protein 99.9 1.7E-21 5.8E-26 201.2 36.1 270 311-625 40-335 (353)
139 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-22 7.2E-27 230.1 29.5 301 311-634 36-413 (741)
140 1pby_B Quinohemoprotein amine 99.9 4.8E-22 1.6E-26 203.7 27.3 270 324-643 2-319 (337)
141 3u4y_A Uncharacterized protein 99.9 4.6E-21 1.6E-25 196.3 33.8 278 269-584 4-307 (331)
142 1pby_B Quinohemoprotein amine 99.9 3.3E-21 1.1E-25 197.5 31.4 275 275-590 2-319 (337)
143 3vgz_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 194.6 34.6 270 267-572 45-335 (353)
144 1ri6_A Putative isomerase YBHE 99.9 6.2E-21 2.1E-25 195.9 30.9 271 324-633 5-307 (343)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-21 5E-26 222.5 25.5 284 312-635 17-394 (723)
146 3hfq_A Uncharacterized protein 99.9 5.5E-20 1.9E-24 189.8 33.3 273 283-637 15-322 (347)
147 2ojh_A Uncharacterized protein 99.9 1.3E-20 4.3E-25 188.8 27.3 252 280-572 18-293 (297)
148 2ojh_A Uncharacterized protein 99.9 7.8E-21 2.7E-25 190.3 24.9 252 329-625 18-293 (297)
149 3scy_A Hypothetical bacterial 99.9 4.4E-19 1.5E-23 184.1 36.3 286 271-587 10-345 (361)
150 1z68_A Fibroblast activation p 99.9 1.5E-20 5.1E-25 214.0 27.0 322 268-637 21-446 (719)
151 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-19 4.3E-24 205.9 33.3 285 266-583 85-437 (706)
152 2oit_A Nucleoporin 214KDA; NH2 99.9 4.6E-19 1.6E-23 188.3 35.3 311 311-634 36-405 (434)
153 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-19 5.7E-24 185.8 28.4 234 386-642 11-333 (349)
154 3o4h_A Acylamino-acid-releasin 99.9 7.2E-20 2.5E-24 203.0 26.0 267 310-634 20-315 (582)
155 3o4h_A Acylamino-acid-releasin 99.8 1.3E-19 4.4E-24 201.0 27.2 262 268-581 27-315 (582)
156 1jmx_B Amine dehydrogenase; ox 99.8 7.5E-19 2.6E-23 180.8 27.4 242 316-590 4-334 (349)
157 4a5s_A Dipeptidyl peptidase 4 99.8 2.2E-18 7.7E-23 196.4 34.0 330 268-637 22-452 (740)
158 2oit_A Nucleoporin 214KDA; NH2 99.8 1.9E-18 6.6E-23 183.5 29.4 253 266-535 40-331 (434)
159 3pe7_A Oligogalacturonate lyas 99.8 3.6E-18 1.2E-22 178.8 30.9 293 310-638 29-386 (388)
160 3hfq_A Uncharacterized protein 99.8 5.1E-18 1.7E-22 175.0 31.1 260 267-586 44-324 (347)
161 3scy_A Hypothetical bacterial 99.8 3.8E-17 1.3E-21 169.4 35.9 248 375-637 48-342 (361)
162 3pe7_A Oligogalacturonate lyas 99.8 5.8E-18 2E-22 177.2 23.2 272 269-579 42-380 (388)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.3E-17 3.2E-21 166.9 32.0 279 277-583 5-343 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.6E-17 3E-21 167.1 31.3 247 376-635 39-342 (365)
165 1z68_A Fibroblast activation p 99.8 1.1E-17 3.8E-22 190.3 22.5 288 267-589 64-451 (719)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.3E-16 4.4E-21 181.9 30.7 251 311-586 16-358 (740)
167 2oiz_A Aromatic amine dehydrog 99.8 6.4E-16 2.2E-20 160.0 31.4 297 272-616 13-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 4.7E-17 1.6E-21 170.6 20.5 280 312-632 36-380 (396)
169 1q7f_A NHL, brain tumor CG1071 99.7 4.5E-15 1.6E-19 148.3 33.9 239 374-635 27-281 (286)
170 3fvz_A Peptidyl-glycine alpha- 99.7 2.4E-15 8.2E-20 153.7 29.1 246 376-634 23-322 (329)
171 1qks_A Cytochrome CD1 nitrite 99.7 8.2E-14 2.8E-18 151.7 42.4 323 272-640 165-544 (567)
172 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-14 3.9E-19 145.4 32.1 242 310-582 28-281 (286)
173 3c5m_A Oligogalacturonate lyas 99.7 7E-16 2.4E-20 161.6 22.8 282 269-584 42-387 (396)
174 3dsm_A Uncharacterized protein 99.7 1E-14 3.5E-19 148.9 29.4 240 377-641 44-308 (328)
175 3azo_A Aminopeptidase; POP fam 99.7 3.2E-15 1.1E-19 168.2 27.7 280 269-587 30-375 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.7 7.7E-15 2.6E-19 149.9 27.9 261 311-581 23-322 (329)
177 3azo_A Aminopeptidase; POP fam 99.7 3.2E-15 1.1E-19 168.2 27.0 285 310-637 22-372 (662)
178 3no2_A Uncharacterized protein 99.7 9.8E-15 3.3E-19 144.8 27.1 253 386-654 5-272 (276)
179 2gop_A Trilobed protease; beta 99.7 2.9E-14 9.9E-19 146.6 29.9 274 273-633 23-330 (347)
180 2dg1_A DRP35, lactonase; beta 99.7 3E-14 1E-18 145.6 29.6 271 311-624 5-300 (333)
181 2z2n_A Virginiamycin B lyase; 99.6 5.2E-12 1.8E-16 126.4 40.7 276 310-635 13-296 (299)
182 2oiz_A Aromatic amine dehydrog 99.6 1.1E-13 3.8E-18 143.1 28.2 225 394-638 30-340 (361)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-13 5.7E-18 155.4 32.0 242 374-636 122-416 (710)
184 2xdw_A Prolyl endopeptidase; a 99.6 9.3E-13 3.2E-17 149.3 35.6 278 271-583 80-416 (710)
185 1qks_A Cytochrome CD1 nitrite 99.6 1.8E-12 6.2E-17 141.1 36.3 299 267-589 201-546 (567)
186 2bkl_A Prolyl endopeptidase; m 99.6 3.7E-14 1.3E-18 160.3 23.0 240 374-637 118-400 (695)
187 2bkl_A Prolyl endopeptidase; m 99.6 6.4E-14 2.2E-18 158.3 24.3 281 269-584 74-400 (695)
188 2dg1_A DRP35, lactonase; beta 99.6 1.3E-12 4.4E-17 133.5 30.8 265 269-572 12-301 (333)
189 3e5z_A Putative gluconolactona 99.6 7.2E-13 2.5E-17 133.0 28.3 231 375-636 26-288 (296)
190 3dsm_A Uncharacterized protein 99.6 2.5E-12 8.5E-17 131.1 31.8 268 282-590 15-310 (328)
191 2z2n_A Virginiamycin B lyase; 99.6 5E-11 1.7E-15 119.1 39.5 273 266-583 18-297 (299)
192 3e5z_A Putative gluconolactona 99.6 1.9E-12 6.5E-17 129.9 28.9 235 310-584 26-289 (296)
193 3sjl_D Methylamine dehydrogena 99.6 3.3E-12 1.1E-16 130.5 30.4 281 269-590 39-372 (386)
194 1rwi_B Serine/threonine-protei 99.5 1.9E-12 6.5E-17 127.7 26.5 236 378-637 25-267 (270)
195 2mad_H Methylamine dehydrogena 99.5 6.2E-11 2.1E-15 122.6 36.8 283 269-588 27-357 (373)
196 1yr2_A Prolyl oligopeptidase; 99.5 1.6E-12 5.6E-17 147.9 26.8 282 269-584 113-444 (741)
197 1rwi_B Serine/threonine-protei 99.5 3.9E-12 1.4E-16 125.4 26.0 235 313-583 25-266 (270)
198 2qc5_A Streptogramin B lactona 99.5 2.3E-10 7.8E-15 114.4 38.6 283 300-633 10-299 (300)
199 3no2_A Uncharacterized protein 99.5 6E-12 2.1E-16 124.6 25.7 232 322-590 4-261 (276)
200 2mad_H Methylamine dehydrogena 99.5 1.5E-10 5.2E-15 119.7 36.2 237 381-638 70-354 (373)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.1E-11 1.1E-15 121.8 30.3 234 376-634 17-299 (314)
202 2gop_A Trilobed protease; beta 99.5 6.1E-12 2.1E-16 129.1 25.2 215 379-636 17-293 (347)
203 1yr2_A Prolyl oligopeptidase; 99.5 6.6E-12 2.3E-16 142.9 27.3 282 320-637 115-444 (741)
204 3sjl_D Methylamine dehydrogena 99.5 2.2E-11 7.6E-16 124.5 27.5 282 317-643 38-372 (386)
205 2qc5_A Streptogramin B lactona 99.5 5.2E-10 1.8E-14 111.7 36.7 269 267-580 24-299 (300)
206 3c75_H MADH, methylamine dehyd 99.4 3.7E-11 1.3E-15 125.1 26.7 278 272-588 82-409 (426)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.7E-15 117.0 29.5 244 311-581 17-299 (314)
208 1kb0_A Quinohemoprotein alcoho 99.4 1.8E-10 6.3E-15 128.7 29.4 295 323-645 77-518 (677)
209 1yiq_A Quinohemoprotein alcoho 99.4 2.4E-10 8.2E-15 128.0 30.3 293 323-645 70-516 (689)
210 3q7m_A Lipoprotein YFGL, BAMB; 99.4 1.7E-09 5.7E-14 112.3 34.2 304 273-632 52-376 (376)
211 1xip_A Nucleoporin NUP159; bet 99.3 2.1E-10 7.1E-15 117.8 25.3 169 378-567 39-230 (388)
212 3g4e_A Regucalcin; six bladed 99.3 6.6E-10 2.2E-14 111.4 28.5 226 311-570 12-261 (297)
213 1kb0_A Quinohemoprotein alcoho 99.3 3E-10 1E-14 127.1 27.8 280 322-633 127-566 (677)
214 3g4e_A Regucalcin; six bladed 99.3 2.2E-09 7.6E-14 107.5 31.4 221 378-622 14-260 (297)
215 3hrp_A Uncharacterized protein 99.3 9.7E-10 3.3E-14 115.3 28.2 246 377-632 131-408 (409)
216 3c75_H MADH, methylamine dehyd 99.3 6.6E-10 2.3E-14 115.7 26.3 233 386-638 84-406 (426)
217 1yiq_A Quinohemoprotein alcoho 99.3 9E-10 3.1E-14 123.4 29.1 311 274-621 70-536 (689)
218 1xip_A Nucleoporin NUP159; bet 99.3 1.2E-10 4.2E-15 119.5 19.3 188 312-524 38-230 (388)
219 3hrp_A Uncharacterized protein 99.3 1.1E-09 3.9E-14 114.8 26.7 235 311-579 130-408 (409)
220 2qe8_A Uncharacterized protein 99.3 4.4E-10 1.5E-14 115.1 22.9 269 312-630 17-317 (343)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 6.5E-09 2.2E-13 105.5 31.4 216 379-622 51-290 (326)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 7E-09 2.4E-13 107.6 32.1 284 322-643 52-346 (376)
223 2ghs_A AGR_C_1268P; regucalcin 99.2 9.8E-09 3.4E-13 104.2 30.9 224 313-571 50-292 (326)
224 3iuj_A Prolyl endopeptidase; h 99.2 9.4E-10 3.2E-14 124.0 25.2 240 310-585 127-409 (693)
225 3dr2_A Exported gluconolactona 99.2 3.3E-09 1.1E-13 106.7 26.0 229 310-578 43-303 (305)
226 3iuj_A Prolyl endopeptidase; h 99.2 1.3E-09 4.4E-14 122.8 23.4 238 374-637 126-408 (693)
227 3dr2_A Exported gluconolactona 99.2 1E-08 3.4E-13 103.1 27.2 225 375-629 43-302 (305)
228 3hxj_A Pyrrolo-quinoline quino 99.2 1.9E-09 6.6E-14 109.4 20.6 293 276-636 32-326 (330)
229 2hz6_A Endoplasmic reticulum t 99.2 1.8E-12 6.1E-17 134.3 -2.2 227 386-643 9-249 (369)
230 2qe8_A Uncharacterized protein 99.2 3.1E-09 1.1E-13 108.8 22.1 275 265-578 19-318 (343)
231 1mda_H Methylamine dehydrogena 99.1 1.6E-09 5.6E-14 110.8 19.6 259 285-590 47-355 (368)
232 1mda_H Methylamine dehydrogena 99.1 2.3E-09 7.8E-14 109.8 20.2 225 396-638 47-350 (368)
233 2hz6_A Endoplasmic reticulum t 99.1 2.6E-11 9E-16 125.5 5.2 186 428-642 11-200 (369)
234 2ece_A 462AA long hypothetical 99.1 4.6E-08 1.6E-12 100.5 29.0 228 386-622 95-399 (462)
235 1fwx_A Nitrous oxide reductase 99.1 1.1E-08 3.9E-13 108.7 23.2 239 380-636 90-433 (595)
236 1kv9_A Type II quinohemoprotei 99.1 9.5E-08 3.3E-12 106.6 30.4 291 323-644 66-498 (668)
237 1kv9_A Type II quinohemoprotei 99.0 4.1E-07 1.4E-11 101.5 30.9 247 323-590 117-497 (668)
238 2ad6_A Methanol dehydrogenase 99.0 4.2E-07 1.4E-11 99.3 30.3 293 323-644 62-504 (571)
239 1npe_A Nidogen, entactin; glyc 99.0 1.9E-06 6.6E-11 84.3 32.3 199 378-590 37-247 (267)
240 2iwa_A Glutamine cyclotransfer 99.0 2.4E-07 8.2E-12 89.6 24.6 217 405-636 9-239 (266)
241 4a2l_A BT_4663, two-component 98.9 1.1E-05 3.7E-10 92.3 42.8 328 271-637 223-574 (795)
242 4a2l_A BT_4663, two-component 98.9 2.3E-05 8E-10 89.5 45.1 325 269-637 269-617 (795)
243 2ad6_A Methanol dehydrogenase 98.9 5.3E-07 1.8E-11 98.5 29.6 245 323-590 115-503 (571)
244 3hxj_A Pyrrolo-quinoline quino 98.9 2E-08 6.7E-13 101.8 17.2 266 317-642 25-291 (330)
245 3nol_A Glutamine cyclotransfer 98.9 1.1E-07 3.7E-12 90.8 20.7 201 406-622 32-243 (262)
246 2ece_A 462AA long hypothetical 98.9 2.6E-07 8.9E-12 95.0 23.6 202 425-634 93-352 (462)
247 1w6s_A Methanol dehydrogenase 98.9 7.5E-07 2.6E-11 97.3 28.2 252 317-590 111-512 (599)
248 3nok_A Glutaminyl cyclase; bet 98.9 2.8E-07 9.5E-12 87.9 21.2 197 406-621 44-253 (268)
249 1npe_A Nidogen, entactin; glyc 98.9 4E-06 1.4E-10 82.0 30.5 228 387-638 2-242 (267)
250 1w6s_A Methanol dehydrogenase 98.8 1.3E-06 4.3E-11 95.5 28.2 293 323-644 62-513 (599)
251 1flg_A Protein (quinoprotein e 98.8 5.7E-06 2E-10 90.4 32.4 268 323-621 117-547 (582)
252 1flg_A Protein (quinoprotein e 98.8 5E-06 1.7E-10 90.9 31.6 246 383-645 114-527 (582)
253 2iwa_A Glutamine cyclotransfer 98.8 3.6E-06 1.2E-10 81.3 26.3 201 312-538 21-238 (266)
254 3mbr_X Glutamine cyclotransfer 98.8 4.7E-06 1.6E-10 78.8 26.2 200 406-622 10-222 (243)
255 1fwx_A Nitrous oxide reductase 98.8 4.5E-07 1.5E-11 96.6 21.1 184 426-634 100-361 (595)
256 3nok_A Glutaminyl cyclase; bet 98.7 1.5E-06 5.2E-11 82.8 21.6 184 377-570 55-254 (268)
257 3v9f_A Two-component system se 98.7 0.00037 1.3E-08 79.4 45.6 333 269-637 72-439 (781)
258 3nol_A Glutamine cyclotransfer 98.7 2.1E-06 7.3E-11 81.9 22.2 184 379-571 45-245 (262)
259 3v9f_A Two-component system se 98.7 0.00012 4E-09 83.5 40.8 327 272-636 267-613 (781)
260 2fp8_A Strictosidine synthase; 98.7 1.6E-05 5.4E-10 80.2 27.9 233 379-634 21-313 (322)
261 3mbr_X Glutamine cyclotransfer 98.6 1.5E-05 5.2E-10 75.4 24.6 187 376-570 20-223 (243)
262 2xtc_A F-box-like/WD repeat-co 98.6 2.3E-08 7.7E-13 76.5 3.8 57 63-119 3-68 (90)
263 2fp8_A Strictosidine synthase; 98.5 5.8E-05 2E-09 76.0 27.5 245 312-581 19-313 (322)
264 2xbg_A YCF48-like protein; pho 98.5 0.00094 3.2E-08 67.2 36.3 276 311-632 35-320 (327)
265 3v64_C Agrin; beta propeller, 98.5 0.00034 1.2E-08 71.2 32.6 232 381-636 38-277 (349)
266 1ijq_A LDL receptor, low-densi 98.5 0.0003 1E-08 70.5 31.7 227 388-636 3-240 (316)
267 3v65_B Low-density lipoprotein 98.4 0.00025 8.6E-09 73.3 30.2 227 386-636 87-320 (386)
268 2p4o_A Hypothetical protein; p 98.4 0.00031 1.1E-08 70.0 30.0 223 312-572 32-279 (306)
269 1ijq_A LDL receptor, low-densi 98.4 0.00096 3.3E-08 66.7 32.8 203 376-589 29-246 (316)
270 2p4o_A Hypothetical protein; p 98.4 0.00022 7.5E-09 71.1 27.9 228 377-624 32-278 (306)
271 3v64_C Agrin; beta propeller, 98.4 0.0014 4.8E-08 66.6 33.5 201 377-589 73-283 (349)
272 1k3i_A Galactose oxidase precu 98.4 4E-05 1.4E-09 85.5 23.6 235 378-623 244-530 (656)
273 1k3i_A Galactose oxidase precu 98.3 3.1E-05 1.1E-09 86.3 22.5 273 266-570 189-530 (656)
274 3qqz_A Putative uncharacterize 98.3 0.00061 2.1E-08 65.3 28.1 218 410-633 21-252 (255)
275 3v65_B Low-density lipoprotein 98.3 0.00066 2.2E-08 70.1 30.6 201 377-589 116-326 (386)
276 3p5b_L Low density lipoprotein 98.3 0.0011 3.9E-08 68.6 32.3 230 386-637 83-323 (400)
277 2xe4_A Oligopeptidase B; hydro 98.3 6.3E-05 2.2E-09 85.1 23.1 203 420-637 225-461 (751)
278 3p5b_L Low density lipoprotein 98.3 0.0022 7.6E-08 66.4 32.8 204 375-589 110-328 (400)
279 3qqz_A Putative uncharacterize 98.2 0.00096 3.3E-08 63.9 27.0 199 374-581 24-253 (255)
280 3sov_A LRP-6, low-density lipo 98.2 0.00095 3.2E-08 66.8 27.0 226 388-637 6-241 (318)
281 2xe4_A Oligopeptidase B; hydro 98.1 0.00016 5.5E-09 81.8 22.2 194 417-632 175-398 (751)
282 4hw6_A Hypothetical protein, I 98.1 0.0012 3.9E-08 69.3 27.1 246 378-633 140-432 (433)
283 3tc9_A Hypothetical hydrolase; 98.1 0.0023 7.7E-08 67.0 28.4 244 378-633 138-429 (430)
284 3amr_A 3-phytase; beta-propell 98.0 0.0022 7.7E-08 63.7 25.5 193 387-589 41-272 (355)
285 3ei3_A DNA damage-binding prot 98.0 0.045 1.5E-06 64.3 40.0 328 274-634 571-999 (1158)
286 3m0c_C LDL receptor, low-densi 98.0 0.014 4.7E-07 65.7 33.8 202 376-589 423-640 (791)
287 2xbg_A YCF48-like protein; pho 97.9 0.022 7.4E-07 57.1 35.8 271 268-579 41-320 (327)
288 3m0c_C LDL receptor, low-densi 97.9 0.0099 3.4E-07 66.8 31.5 229 386-636 395-634 (791)
289 3sov_A LRP-6, low-density lipo 97.9 0.009 3.1E-07 59.6 28.1 199 379-589 37-246 (318)
290 4hw6_A Hypothetical protein, I 97.9 0.0023 7.9E-08 67.0 24.4 241 312-580 139-432 (433)
291 3tc9_A Hypothetical hydrolase; 97.9 0.004 1.4E-07 65.1 25.7 241 312-580 137-429 (430)
292 3amr_A 3-phytase; beta-propell 97.8 0.0047 1.6E-07 61.4 23.9 186 428-633 42-262 (355)
293 4a0p_A LRP6, LRP-6, low-densit 97.8 0.037 1.3E-06 60.6 32.2 225 387-636 7-239 (628)
294 1n7d_A LDL receptor, low-densi 97.7 0.00021 7.2E-09 79.8 13.5 202 377-589 406-622 (699)
295 3kya_A Putative phosphatase; s 97.6 0.032 1.1E-06 58.6 27.8 254 378-637 140-478 (496)
296 3kya_A Putative phosphatase; s 97.6 0.028 9.7E-07 59.1 27.3 250 313-586 140-480 (496)
297 2p9w_A MAL S 1 allergenic prot 97.6 0.0022 7.4E-08 63.3 17.5 160 419-581 16-215 (334)
298 2xzh_A Clathrin heavy chain 1; 97.6 0.059 2E-06 52.6 33.5 228 386-636 78-334 (365)
299 1n7d_A LDL receptor, low-densi 97.6 0.00028 9.7E-09 78.7 11.7 228 388-637 379-617 (699)
300 3s94_A LRP-6, low-density lipo 97.6 0.15 5E-06 55.8 37.8 298 266-583 174-512 (619)
301 1bpo_A Protein (clathrin); cla 97.5 0.1 3.5E-06 53.0 32.2 228 386-636 77-333 (494)
302 3s94_A LRP-6, low-density lipo 97.5 0.18 6.2E-06 55.1 40.1 334 262-635 39-424 (619)
303 2p9w_A MAL S 1 allergenic prot 97.4 0.0073 2.5E-07 59.5 17.9 171 455-634 11-215 (334)
304 3ei3_A DNA damage-binding prot 97.3 0.43 1.5E-05 56.0 41.3 308 274-636 523-915 (1158)
305 3ii7_A Kelch-like protein 7; p 97.3 0.05 1.7E-06 53.7 23.6 227 388-642 14-278 (306)
306 3sre_A PON1, serum paraoxonase 97.2 0.17 6E-06 50.7 25.9 197 417-633 51-297 (355)
307 2xzh_A Clathrin heavy chain 1; 97.2 0.2 6.7E-06 49.0 31.7 262 284-584 49-335 (365)
308 3a9g_A Putative uncharacterize 97.2 0.24 8.1E-06 50.0 27.2 228 377-622 29-330 (354)
309 2vpj_A Kelch-like protein 12; 97.2 0.068 2.3E-06 52.5 22.7 223 395-643 31-285 (301)
310 1bpo_A Protein (clathrin); cla 97.2 0.28 9.4E-06 49.9 32.2 261 284-584 48-334 (494)
311 3ii7_A Kelch-like protein 7; p 97.1 0.16 5.6E-06 49.8 24.9 185 386-585 56-276 (306)
312 1uuj_A Platelet-activating fac 97.1 0.00025 8.6E-09 53.8 3.0 61 60-120 5-67 (88)
313 2be1_A Serine/threonine-protei 97.0 0.0012 4.1E-08 66.0 8.2 200 428-639 12-236 (339)
314 2ism_A Putative oxidoreductase 97.0 0.34 1.1E-05 48.8 26.6 226 378-622 32-333 (352)
315 2xn4_A Kelch-like protein 2; s 97.0 0.14 4.8E-06 50.2 23.0 222 395-643 30-283 (302)
316 4a0p_A LRP6, LRP-6, low-densit 97.0 0.63 2.1E-05 50.9 45.6 197 417-636 341-551 (628)
317 3ott_A Two-component system se 97.0 0.39 1.3E-05 54.1 29.0 236 376-636 21-262 (758)
318 4asc_A Kelch repeat and BTB do 96.9 0.31 1.1E-05 48.0 24.8 224 393-642 11-283 (315)
319 3sre_A PON1, serum paraoxonase 96.9 0.19 6.6E-06 50.4 22.8 172 394-580 82-297 (355)
320 3pbp_A Nucleoporin NUP82; beta 96.9 0.076 2.6E-06 53.9 19.5 152 424-577 29-208 (452)
321 2vpj_A Kelch-like protein 12; 96.9 0.15 5.3E-06 49.8 22.1 184 386-584 63-281 (301)
322 1zgk_A Kelch-like ECH-associat 96.6 0.21 7E-06 49.2 21.0 221 395-642 39-293 (308)
323 2xn4_A Kelch-like protein 2; s 96.5 0.37 1.3E-05 47.1 21.9 183 386-583 62-278 (302)
324 2g8s_A Glucose/sorbosone dehyd 96.5 0.83 2.8E-05 45.9 26.5 236 378-632 19-350 (353)
325 1xi4_A Clathrin heavy chain; a 96.5 0.21 7.3E-06 58.4 21.7 188 386-587 77-295 (1630)
326 2ism_A Putative oxidoreductase 96.4 0.82 2.8E-05 45.9 23.8 104 416-524 31-151 (352)
327 3pbp_A Nucleoporin NUP82; beta 96.4 0.11 3.8E-06 52.7 16.7 146 386-533 32-208 (452)
328 3ott_A Two-component system se 96.3 2 6.8E-05 48.2 40.2 321 271-636 199-547 (758)
329 3das_A Putative oxidoreductase 96.3 0.24 8.3E-06 49.5 18.7 115 451-569 26-158 (347)
330 2be1_A Serine/threonine-protei 96.3 0.036 1.2E-06 55.2 12.5 195 386-586 10-236 (339)
331 4asc_A Kelch repeat and BTB do 96.2 0.65 2.2E-05 45.7 21.9 176 397-586 69-282 (315)
332 2woz_A Kelch repeat and BTB do 96.1 1.2 4.1E-05 43.8 25.2 222 395-642 24-293 (318)
333 1xi4_A Clathrin heavy chain; a 96.1 0.36 1.2E-05 56.5 20.8 261 284-584 48-334 (1630)
334 1zgk_A Kelch-like ECH-associat 96.1 0.66 2.2E-05 45.5 20.9 176 395-585 90-291 (308)
335 2uvk_A YJHT; unknown function, 96.1 0.68 2.3E-05 46.4 21.4 88 386-477 20-128 (357)
336 1tl2_A L10, protein (tachylect 95.9 0.12 4.1E-06 47.5 13.0 149 417-575 42-204 (236)
337 3a9g_A Putative uncharacterize 95.9 0.63 2.1E-05 46.8 19.8 146 415-567 28-214 (354)
338 1tl2_A L10, protein (tachylect 95.8 0.22 7.5E-06 45.8 14.1 143 428-580 6-162 (236)
339 2uvk_A YJHT; unknown function, 95.6 1.3 4.5E-05 44.3 21.1 59 529-589 286-350 (357)
340 2woz_A Kelch repeat and BTB do 95.6 1.6 5.5E-05 42.8 21.4 176 397-587 80-293 (318)
341 1cru_A Protein (soluble quinop 95.5 2.1 7.2E-05 44.6 22.9 111 456-570 26-163 (454)
342 1cru_A Protein (soluble quinop 95.2 1.6 5.6E-05 45.4 20.5 107 415-524 26-160 (454)
343 2g8s_A Glucose/sorbosone dehyd 95.1 0.71 2.4E-05 46.4 17.0 107 457-569 18-148 (353)
344 3das_A Putative oxidoreductase 95.1 1.8 6.2E-05 43.1 19.5 152 410-567 26-218 (347)
345 3s25_A Hypothetical 7-bladed b 94.9 3.1 0.0001 40.6 28.7 242 269-568 20-279 (302)
346 2zwa_A Leucine carboxyl methyl 94.7 2.1 7.1E-05 47.4 21.0 195 386-585 398-639 (695)
347 3sbq_A Nitrous-oxide reductase 94.7 5.2 0.00018 42.1 25.8 244 326-582 73-409 (638)
348 2zwa_A Leucine carboxyl methyl 93.8 3.9 0.00013 45.2 20.6 198 425-640 396-639 (695)
349 3qhy_B Beta-lactamase inhibito 93.4 5.4 0.00018 38.4 18.6 222 378-635 25-247 (282)
350 3s25_A Hypothetical 7-bladed b 93.1 6.9 0.00024 38.1 28.3 158 396-583 89-257 (302)
351 3q6k_A 43.2 kDa salivary prote 91.5 12 0.00042 37.5 22.3 185 396-622 124-342 (381)
352 3sbq_A Nitrous-oxide reductase 90.5 1.5 5.1E-05 46.1 10.9 125 437-570 299-454 (638)
353 3q6k_A 43.2 kDa salivary prote 89.6 3.7 0.00013 41.3 12.8 147 479-634 124-306 (381)
354 2d68_A FOP, FGFR1OP; alpha hel 86.4 0.53 1.8E-05 35.3 3.2 31 65-95 18-48 (82)
355 3qhy_B Beta-lactamase inhibito 84.9 28 0.00095 33.2 20.1 183 378-582 64-247 (282)
356 2wg3_C Hedgehog-interacting pr 84.7 14 0.00049 38.3 14.5 112 457-571 14-159 (463)
357 2wg3_C Hedgehog-interacting pr 78.8 39 0.0013 35.0 15.1 108 509-625 15-160 (463)
358 4gq2_M Nucleoporin NUP120; bet 78.3 9.8 0.00034 43.7 11.3 42 550-591 235-276 (950)
359 4gq2_M Nucleoporin NUP120; bet 76.8 27 0.00092 40.0 14.4 40 457-496 236-275 (950)
360 4hvt_A Ritya.17583.B, post-pro 71.6 1.2E+02 0.0042 33.1 23.5 182 395-584 216-432 (711)
361 3uc1_A DNA gyrase subunit A; D 69.9 85 0.0029 30.6 24.5 209 311-536 41-278 (327)
362 3no0_A DNA gyrase subunit A; D 67.9 83 0.0029 29.8 18.2 186 428-634 37-246 (276)
363 3b7f_A Glycosyl hydrolase, BNR 66.5 1.1E+02 0.0037 30.5 21.4 206 428-642 24-268 (394)
364 4hvt_A Ritya.17583.B, post-pro 65.8 1.6E+02 0.0055 32.2 19.4 191 423-635 137-382 (711)
365 1zi0_A DNA gyrase subunit A; b 61.4 1.2E+02 0.004 29.2 26.7 244 272-536 1-276 (307)
366 1oyi_A Double-stranded RNA-bin 55.8 5.3 0.00018 30.0 1.9 40 56-97 4-45 (82)
367 3b7f_A Glycosyl hydrolase, BNR 51.3 1.9E+02 0.0066 28.5 25.5 245 386-642 22-328 (394)
368 4a9v_A PHOX; hydrolase, beta-p 51.2 52 0.0018 34.8 9.1 62 508-570 476-550 (592)
369 3zwu_A Alkaline phosphatase PH 50.3 50 0.0017 35.3 9.1 59 509-568 477-548 (592)
370 3f7f_A Nucleoporin NUP120; nuc 50.2 59 0.002 35.4 9.6 36 553-590 224-259 (729)
371 3elq_A Arylsulfate sulfotransf 49.3 2.6E+02 0.0089 29.5 16.3 133 509-646 208-396 (571)
372 2zux_A YESW protein; beta-prop 45.5 2.9E+02 0.01 29.0 20.0 56 397-452 231-308 (591)
373 4fhn_B Nucleoporin NUP120; pro 44.5 1.8E+02 0.0063 33.9 13.6 38 508-545 238-276 (1139)
374 4a9v_A PHOX; hydrolase, beta-p 42.1 1E+02 0.0035 32.6 9.6 59 417-475 477-549 (592)
375 1suu_A DNA gyrase subunit A; t 39.3 2.6E+02 0.0091 26.7 28.3 200 271-487 5-231 (312)
376 2jt1_A PEFI protein; solution 38.0 13 0.00043 27.6 1.5 37 60-96 1-38 (77)
377 2xz2_A CSTF-50, isoform B; RNA 36.5 21 0.00072 25.2 2.3 32 63-94 14-45 (66)
378 1zbp_A Hypothetical protein VP 35.5 42 0.0014 31.6 5.0 56 72-127 4-64 (273)
379 4fhn_B Nucleoporin NUP120; pro 32.1 37 0.0013 39.8 5.0 40 551-590 238-277 (1139)
380 3zwu_A Alkaline phosphatase PH 31.6 1.4E+02 0.0046 31.9 8.8 60 552-621 477-548 (592)
381 3uc1_A DNA gyrase subunit A; D 30.1 3.8E+02 0.013 25.8 27.5 161 415-581 94-279 (327)
382 3f7f_A Nucleoporin NUP120; nuc 26.7 84 0.0029 34.3 6.1 37 377-413 222-259 (729)
383 1kdl_A YOPD protein; yersinia, 24.1 45 0.0015 18.4 1.7 14 66-79 5-18 (26)
384 2jvf_A De novo protein M7; tet 22.0 23 0.00077 25.1 0.4 21 62-82 59-79 (96)
385 4h10_A ARYL hydrocarbon recept 21.8 71 0.0024 23.2 3.1 33 48-80 30-62 (73)
386 1wp5_A Topoisomerase IV; broke 21.1 5.5E+02 0.019 24.6 25.2 186 388-581 7-225 (323)
387 2dk1_A WW domain-binding prote 20.5 1.1E+02 0.0037 20.3 3.5 31 616-646 8-38 (50)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-48 Score=412.01 Aligned_cols=280 Identities=18% Similarity=0.214 Sum_probs=250.5
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.++|.+++|+|++++|++|+.||+|++||+.++.. ...+ .+|...|.+++|+ +
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------------------~~~l--~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF---------------------ERTL--KGHTDSVQDISFDHSG 162 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC---------------------CEEE--CCCSSCEEEEEECTTS
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---------------------EEEE--eccCCcEEEEEEcCCC
Confidence 3999999999999999999999999999999876653 1111 1799999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
++|++|+ |++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|++|++||++++.++..+.+|...|.++.|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--------------------CcEEEE
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLS 524 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~ 524 (660)
+|++.++++++.|++|++||+++++. .. ...+|. ..|.+++|+|+ |.++++
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 99999999999999999999998543 22 345666 68999999996 667888
Q ss_pred -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 525 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 525 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
+.|+.|++||++++.++..+.+ |...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. +| ...+
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------~h-~~~v 383 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHFV 383 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSCE
T ss_pred EeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-------CC-CCcE
Confidence 5899999999999999988865 68899999999999999999999999999999999888876 44 4445
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
. +++|+| ++.+|++|+.||+|+||++.
T Consensus 384 ~--~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 384 T--SLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp E--EEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred E--EEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 4 999999 89999999999999999863
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-44 Score=402.45 Aligned_cols=365 Identities=13% Similarity=0.114 Sum_probs=285.0
Q ss_pred CCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126 241 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 319 (660)
Q Consensus 241 ~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~ 319 (660)
++.....|.||.. |.. +.|||||++||+|+.||+|+|||+... .......+.. |.++|.+++|
T Consensus 48 ~~~~~~~~~~h~~~v~~-----------~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~f 111 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTV-----------AKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISW 111 (611)
T ss_dssp CSSCCEEECCCSSCEEE-----------EEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEE
T ss_pred CcccCeEecCCCCceEE-----------EEECCCCcEEEEEeCCCCEEEeECCCC---cceeeEeecc--cCCceEEEEE
Confidence 3445556666665 444 499999999999999999999998632 1222223433 8999999999
Q ss_pred ecCCCEEEEEECC----CcEEEEeccCCce--------------------eeeeeccceeEEEecCCCCceeeecccCCC
Q 006126 320 SHSGDFLVALTQT----ATHKLWKWQSNKQ--------------------SLEEENVNMESQLYQPSSKLVMTNDIAADP 375 (660)
Q Consensus 320 spdg~~l~s~s~d----g~i~vw~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 375 (660)
+|+|++|++++.+ +.|++||...... .+...+.+..+++|+..++.+...+. +|
T Consensus 112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H 189 (611)
T 1nr0_A 112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EH 189 (611)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CC
T ss_pred CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cc
Confidence 9999999999875 4788887432111 12234556678999988877665443 79
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC
Q 006126 376 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~ 444 (660)
...|.+++|+ +++|++++ |++|++||+.++++...+. +|...|.+++|+|++ +|++++.|++|++||+.
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 88999999 9999999999999988884 799999999999999 99999999999999998
Q ss_pred CCceee-------------------------------------------EeeccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 006126 445 TKKTKA-------------------------------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLC 481 (660)
Q Consensus 445 ~~~~~~-------------------------------------------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~ 481 (660)
+++++. .+.+|...|++++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 876543 3357899999999999999999999999999
Q ss_pred EEEcCCCeeeecee------eee-------------------e-------------------------------------
Q 006126 482 VWDAVGWKKLCSKF------LHS-------------------F------------------------------------- 499 (660)
Q Consensus 482 vwd~~~~~~~~~~~------~~~-------------------~------------------------------------- 499 (660)
+||+.++....... +.. +
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 99998764321100 000 0
Q ss_pred --------------eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE
Q 006126 500 --------------QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 564 (660)
Q Consensus 500 --------------~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 564 (660)
...|. ..+.+++|+|||++|++ +.|++|++||+.++....... ..|...|++++|+|||++
T Consensus 430 ~~~~v~~~~~~~~~~~~~~---~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 430 CYKHIAIYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp ESSEEEEEETTEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred eCceEEEEeCCceeeeecC---CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence 00011 35789999999999999 589999999997765422111 247899999999999999
Q ss_pred EEEEecCCeEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 565 IYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 565 l~sg~~dg~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
|++++.|+.|++|++.+ +++..... ..+| ...|+ +++|+| |+++||+|+.|++|+||++.+++
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~~~-----~~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHTNS-----WTFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCC-----CCCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEEcCCCCEEEEEcCCCCceeeeee-----eeec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence 99999999999999987 55433211 1124 44455 999999 89999999999999999998765
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.2e-43 Score=390.21 Aligned_cols=339 Identities=13% Similarity=0.083 Sum_probs=273.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC-----CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~-----~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~ 342 (660)
+.|+|||++|++++.|++|++||... +..... +. ..+|.+.|.+++|+|+|++|++++.|++|++||+.+
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~----g~~~~~-~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVD----GTKTGV-FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEECCCcEEEEECCC----CcEeee-eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 49999999999999999999999874 333221 21 125999999999999999999999999999999987
Q ss_pred Cceeee----------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcE
Q 006126 343 NKQSLE----------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 397 (660)
Q Consensus 343 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I 397 (660)
++.... ....+..+++|+..++....... +|...|.+++|+ +++|++++ |++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--gh~~~v~~l~~spdg~~l~s~s~D~~v 348 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHI 348 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc--CCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence 654321 22344567899988887655433 799999999999 88999999 9999
Q ss_pred EEEECCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee---------------------------
Q 006126 398 SIFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--------------------------- 449 (660)
Q Consensus 398 ~iwd~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~--------------------------- 449 (660)
++||+.+++....+ ..|...|.+++|++++.+++++.|+.+++|++.++...
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 99999999887766 57899999999998778889999999999997653211
Q ss_pred --------------eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126 450 --------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515 (660)
Q Consensus 450 --------------~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 515 (660)
..+ .|...+.+++|+|||++|++|+.|++|++||+.++... .+. . .+|. ..|.+++|
T Consensus 429 ~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~-~-~~h~---~~v~~v~f 499 (611)
T 1nr0_A 429 ACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVK-T-IVHP---AEITSVAF 499 (611)
T ss_dssp EESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEE-E-EECS---SCEEEEEE
T ss_pred EeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eee-c-cCCC---CceEEEEE
Confidence 111 14567899999999999999999999999999875321 122 2 4666 68999999
Q ss_pred ecCCcEEEE-EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee-E-EEeecc
Q 006126 516 HPDQIHLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-R-CQINLT 591 (660)
Q Consensus 516 sp~~~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~-~-~~~~~~ 591 (660)
+|||++|++ +.|++|++||+.+ ++.........|...|.+++|+|||++|++|+.|+.|++||+.++.. . ..+
T Consensus 500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~--- 576 (611)
T 1nr0_A 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK--- 576 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---
T ss_pred CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---
Confidence 999999999 5899999999987 55544312223789999999999999999999999999999988652 2 222
Q ss_pred cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 592 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 592 ~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.||....+. +++|+| ++. |++++.|++|++|++.
T Consensus 577 ----~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 577 ----GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ----TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred ----ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 255334455 999999 787 9999999999999973
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=348.42 Aligned_cols=282 Identities=17% Similarity=0.224 Sum_probs=249.2
Q ss_pred CCCCCeEEEEEecC----CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126 309 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 309 ~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
+|.+.|++++|+|+ +.+|++|+.|++|+||++...... ..|. ..+|...|.+++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------~~~~-----------l~gh~~~v~~~~~ 88 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------LQWS-----------LEGHQLGVVSVDI 88 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------EEEE-----------ECCCSSCEEEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------eeee-----------eccCCCCEEEEEE
Confidence 49999999999985 679999999999999998765431 1111 1279999999999
Q ss_pred e--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 385 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 385 s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .|++|+.|+.|++||+++++....+..|...|.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence 9 78999999 9999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 539 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~ 539 (660)
+++|+|++++|++++.||.|++||+++++. +. ...+|. ..|.+++|+|++++|+++ .|+.|++||+++++
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGKL-----LH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 999999999999999999999999998643 33 345676 689999999999999995 89999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
....+.+ |...|.+++|+|++++|++|+.|+.|++||+.+++++..+. +| ...++ +++|+| ++.+|+
T Consensus 240 ~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~h-~~~v~--~v~~s~-~g~~l~ 306 (321)
T 3ow8_A 240 LAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------DH-QDQVW--GVKYNG-NGSKIV 306 (321)
T ss_dssp EEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CC-SSCEE--EEEECT-TSSEEE
T ss_pred eeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-------CC-CCcEE--EEEECC-CCCEEE
Confidence 8888865 68999999999999999999999999999999999988876 34 44455 999999 899999
Q ss_pred EEeCCCeEEEEeCC
Q 006126 620 LGLTNGRVHVIEPL 633 (660)
Q Consensus 620 s~s~Dg~v~iw~~~ 633 (660)
+++.||+|+|||+.
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999973
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.2e-41 Score=372.82 Aligned_cols=327 Identities=18% Similarity=0.241 Sum_probs=278.9
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.+.|+|||++|++++.|+.|++||... ..... +. +|...|.+++|+|+|+++++++.|+.+++|+.......
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~~~----~~~~~--~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~ 297 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ 297 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTS----CEEEE--EC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC----CEEEE--Ee--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEE
Confidence 358999999999999999999999752 33332 43 38999999999999999999999999999997543221
Q ss_pred ee--------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC
Q 006126 347 LE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 403 (660)
Q Consensus 347 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~ 403 (660)
.. ..+.+..+++|+..+..+.... +|...|.+++|+ +.+|++++ |+.|++||.
T Consensus 298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~- 373 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR- 373 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe---CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-
Confidence 10 2334456789998766554332 799999999999 88999999 999999995
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 006126 404 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 482 (660)
Q Consensus 404 ~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~v 482 (660)
+++.+..+.+|...|.+++|+|++ .|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 578888999999999999999999 9999999999999995 57888999999999999999999999999999999999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccC
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
||... ..+. ...+|. ..|.+++|+|++++|++ +.|+.|++||. +++++..+.. |...|++++|+||
T Consensus 453 w~~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~d 519 (577)
T 2ymu_A 453 WNRNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD 519 (577)
T ss_dssp EETTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred EECCC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCC
Confidence 99754 2333 455677 68999999999999999 58999999996 7888888865 6899999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 562 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 562 g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
|++|++++.||.|++||. +++.+..+. || ...|. +++|+| |+++|+|++.|++|++||
T Consensus 520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeC-CCCEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 999999999999999996 577777776 55 44455 999999 899999999999999997
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-41 Score=348.15 Aligned_cols=280 Identities=14% Similarity=0.180 Sum_probs=247.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|++++|+|+|++|++|+.||+|++||..++.. +.... .|...|.+++|+ +
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~---------------------~~~~~--~~~~~v~~~~~s~~~ 109 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---------------------VHAIP--LRSSWVMTCAYAPSG 109 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE---------------------EEEEE--CSSSCEEEEEECTTS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc---------------------ceEee--cCCccEEEEEECCCC
Confidence 3999999999999999999999999999999876653 11111 588899999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 387 SHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
++|++++ |+.|++|++.++ .....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+.+|.+.|.+
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEE
Confidence 8999999 999999999875 45667889999999999999888899999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 540 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 540 (660)
++|+|+++++++|+.|++|++||++++.. .. ...+|. ..|.+++|+|++++|++ +.|+.|++||+++++.
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMC-----RQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCee-----EE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 99999999999999999999999998543 33 455677 68999999999999999 5899999999999888
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
+..+....+...|.+++|+|+|++|++|+.||.|++||+.+++....+. || ...+. +++|+| ++.+|++
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~s~-dg~~l~s 329 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-------cC-CCcEE--EEEEcC-CCCEEEE
Confidence 8777544445689999999999999999999999999999999888776 44 44555 999999 8999999
Q ss_pred EeCCCeEEEEe
Q 006126 621 GLTNGRVHVIE 631 (660)
Q Consensus 621 ~s~Dg~v~iw~ 631 (660)
|+.||+|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999997
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-40 Score=344.34 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=247.6
Q ss_pred CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126 243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321 (660)
Q Consensus 243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp 321 (660)
.....+.||.. |..+ .|+|||++|++|+.||+|++||..+ ...... ++. |...|.+++|+|
T Consensus 46 ~~~~~l~gH~~~v~~~-----------~~s~d~~~l~s~s~Dg~v~iWd~~~---~~~~~~--~~~--~~~~v~~~~~s~ 107 (340)
T 1got_B 46 RTRRTLRGHLAKIYAM-----------HWGTDSRLLLSASQDGKLIIWDSYT---TNKVHA--IPL--RSSWVMTCAYAP 107 (340)
T ss_dssp CEEEEECCCSSCEEEE-----------EECTTSSEEEEEETTTEEEEEETTT---CCEEEE--EEC--SSSCEEEEEECT
T ss_pred hhheeecCCCCceEEE-----------EECCCCCEEEEEeCCCcEEEEECCC---CCcceE--eec--CCccEEEEEECC
Confidence 34556777776 5554 9999999999999999999999875 223333 333 899999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI 399 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~i 399 (660)
+|++|++|+.|+.+++|++.+..... ...... .+|...|.++.|+ +..+++++ |+.|++
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~-----------------~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~d~~i~~ 168 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNV-----------------RVSREL--AGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSC-----------------EEEEEE--ECCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcc-----------------eeEEEe--cCCCccEEEEEECCCCcEEEEECCCcEEE
Confidence 99999999999999999987653200 011111 1799999999999 77888888 999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 478 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg 478 (660)
||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++++.||
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 557 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 557 (660)
+|++||+++++...... ...+. ..|.+++|+|+|+++++ +.|+.|++||+.+++.+..+.+ |...|.+++
T Consensus 249 ~v~iwd~~~~~~~~~~~----~~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~ 319 (340)
T 1got_B 249 TCRLFDLRADQELMTYS----HDNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLG 319 (340)
T ss_dssp CEEEEETTTTEEEEEEC----CTTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEE
T ss_pred cEEEEECCCCcEEEEEc----cCCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEEE
Confidence 99999999865322111 11122 47999999999999999 5899999999999998888865 789999999
Q ss_pred EccCCCEEEEEecCCeEEEEE
Q 006126 558 YSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 558 ~s~dg~~l~sg~~dg~I~iwd 578 (660)
|+|+|.+|++|+.||.|+|||
T Consensus 320 ~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 320 VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999997
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-41 Score=354.52 Aligned_cols=321 Identities=13% Similarity=0.138 Sum_probs=227.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.+.+++.++ .++.+.....|++.. ... ..|...|.+++|||||++|++++.|.. ++||
T Consensus 12 d~g~~~~~~-~~~g~~~~~~w~~p~----~~p-------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd--------- 69 (357)
T 4g56_B 12 DLGTENLYF-QSNGSSKGSAWGRPV----TAP-------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWG--------- 69 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCC---------
T ss_pred CCCccceEE-ecCCCccccccCCCC----CCc-------ccccCCEEEEEECCCCCEEEEEcCCCC-cccc---------
Confidence 444445443 344467778898752 111 138999999999999999999998532 3332
Q ss_pred eeccceeEEEecCCCCceeeecc--cCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEE----EEcCCCCCeEE
Q 006126 349 EENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATY 420 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~----~~~~~~~~v~~ 420 (660)
..+.+|+..++....... ..+|...|.+++|+ ...+++++ ||+|++||+.+++... ...+|...|++
T Consensus 70 -----~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 70 -----GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp -----EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred -----CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 112334433332111110 01588899999999 66666777 9999999999876543 33478999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
++|+|++ .|++|+.|+.|++||+++++.+..+.+|...|++++|+|++. ++++++.|++|++||+++++......
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--- 221 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--- 221 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---
Confidence 9999999 999999999999999999999999999999999999999875 78999999999999999865432211
Q ss_pred eeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVK 575 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~ 575 (660)
...+. ..+.+++|+|++ .++++ +.|+.|++||+++++++..+.. |...|++++|+|++ ++|++|+.|+.|+
T Consensus 222 -~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 222 -FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp -CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred -ecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 12333 579999999985 56777 4889999999999999888865 68899999999987 6899999999999
Q ss_pred EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
|||+++++++..+ +| ...|+ +++|+|.++.+|+|||.||+|++|++.+..
T Consensus 296 iwd~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 296 VLDADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EECTTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEECCCCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999999877654 45 44455 999999779999999999999999997643
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-41 Score=346.78 Aligned_cols=289 Identities=14% Similarity=0.151 Sum_probs=231.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC-----CceeeecccCCCCCCeEEEEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-----KLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~ 384 (660)
|...|.+++|+|||++|++++ |+++++||.. +.+|+... +...... .|...|.+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGS--------------LWLFKDPCAAPNEGFCSAGV---QTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEE--------------EEEESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeece--------------eeeeccccccCCcceeeeee---ccCCCEEEEEE
Confidence 678899999999999988887 7788888732 12232111 1111111 36678999999
Q ss_pred e-CCEEEEEe-CCcEEEEECCCCeEEEE----EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126 385 R-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 385 s-~~~l~s~~-dg~I~iwd~~~~~~~~~----~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~ 457 (660)
+ ++.|++|+ ||+|++||+.+++.... ..+|...|++++|+|+| +|++|+.|++|++||+++++++..+.+|..
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9 88899999 99999999998875543 34899999999999999 999999999999999999999999999999
Q ss_pred CeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcEEEE-EecCcEEEEe
Q 006126 458 RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYE 534 (660)
Q Consensus 458 ~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-~~d~~i~iwd 534 (660)
.|++++|+|++ .+|++++.|++|++||+++++...... ...+. ..+.+++|+|+ +.++++ +.|+.|++||
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----CSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeee----cceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 99999999987 478999999999999999865432211 12233 46899999995 566777 4899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
+++++++.++.. |...|++++|+|++ ++|++|+.|+.|+|||+.++++... . || ...|+ +++|+|+
T Consensus 244 ~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~-------~H-~~~V~--~v~~sp~ 310 (344)
T 4gqb_B 244 TKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-Q-------AH-RDFVR--DATWSPL 310 (344)
T ss_dssp SCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-C-------CC-SSCEE--EEEECSS
T ss_pred CCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-c-------CC-CCCEE--EEEEeCC
Confidence 999999988875 68999999999998 5899999999999999999986542 2 55 44455 9999994
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc
Q 006126 614 EPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 614 d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+..+|++||.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 44578899999999999997653
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4e-40 Score=334.83 Aligned_cols=281 Identities=17% Similarity=0.270 Sum_probs=240.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.+.|.+++|+|+|++|++++.||.|++||+.++.. +.... +|..+|.+++|+ ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARKN 68 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGGT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEee--ccCCcEEEEEEeCCCC
Confidence 899999999999999999999999999999876643 11111 688999999999 88
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~ 464 (660)
+|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+.+|...|.+++|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 9999999999999999887 455778899999999999
Q ss_pred eC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-EecCcEEEEeCCCCce
Q 006126 465 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNH 540 (660)
Q Consensus 465 sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~d~~i~iwd~~~~~~ 540 (660)
+| ++..|++|+.|++|++||++++.. ......+|. ..+..+.|+| ++.+|++ +.|++|++||++++++
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 99 678999999999999999987432 222334554 5788999987 7788988 5899999999999999
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEE
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIA 619 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~ 619 (660)
+.++.+ |...|.+++|+|++++|++|+.||.|++||+.++++...+..+ ...++ +++|+|+++. +++
T Consensus 221 ~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 221 VATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--------SSSEE--EEEECTTCGGGCEE
T ss_pred ceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--------CccEE--EEEECCCCCceEEE
Confidence 998875 6899999999999999999999999999999999998888632 34455 9999994333 577
Q ss_pred EEeCCCeEEEEeCCC
Q 006126 620 LGLTNGRVHVIEPLE 634 (660)
Q Consensus 620 s~s~Dg~v~iw~~~~ 634 (660)
+|++| .+.+|++..
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77655 578888765
No 11
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-40 Score=336.72 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=245.6
Q ss_pred cccccCCCC-CCceeecCCCCceeeEecCC----CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126 245 LDASSGDDS-NDSSCFNDNNQSRESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 319 (660)
Q Consensus 245 ~~~~~g~~~-v~~~~~~~~~~~~~~~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~ 319 (660)
++...+|.. |.++ .|+|+ +++|++|+.|++|++|++.. ........+. +|...|.+++|
T Consensus 25 ~~~~~~H~~~V~~v-----------~~~~~~~~~~~~l~tgs~D~~v~vW~~~~---~~~~~~~~l~--gh~~~v~~~~~ 88 (321)
T 3ow8_A 25 FKQEQAHDDAIWSV-----------AWGTNKKENSETVVTGSLDDLVKVWKWRD---ERLDLQWSLE--GHQLGVVSVDI 88 (321)
T ss_dssp EEETTSSSSCEEEE-----------EEC-------CEEEEEETTSCEEEEEEET---TEEEEEEEEC--CCSSCEEEEEE
T ss_pred eeecccCCCcEEEE-----------EEecCCCCCCCEEEEEcCCCCEEEEECCC---CCeeeeeeec--cCCCCEEEEEE
Confidence 344456665 5554 77764 67999999999999999974 1222233454 49999999999
Q ss_pred ecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCc
Q 006126 320 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK 396 (660)
Q Consensus 320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~ 396 (660)
+|++.++++++.|++|++||+.+++.. .... .|...+.+++|+ +++|++++ ||.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~---------------------~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQI---------------------KSID--AGPVDAWTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEE---------------------EEEE--CCTTCCCCEEECTTSSEEEEECTTSE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEE---------------------EEEe--CCCccEEEEEECCCCCEEEEEcCCCc
Confidence 999999999999999999998776541 1111 577788899999 88999999 999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 397 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
|++||+.+++....+..+...|.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++
T Consensus 146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 554 (660)
.|++|++||++++.. .. ...+|. ..|.+++|+|++++|++ +.|++|++||+.+++++.++.. |...|.
T Consensus 226 ~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~~v~ 294 (321)
T 3ow8_A 226 DDGYIKIYDVQHANL-----AG-TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVW 294 (321)
T ss_dssp TTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEE
T ss_pred CCCeEEEEECCCcce-----eE-EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCCcEE
Confidence 999999999998543 23 456777 68999999999999999 5899999999999999988865 689999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECC
Q 006126 555 YATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
+++|+|+|++|++++.||.|+|||..
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999964
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=341.74 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=238.1
Q ss_pred CCC-CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~-~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
|.. .|++++|+|+|++||+|+.|++|+||++.++.... ......+|...|.+++|+ +
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCC
Confidence 777 99999999999999999999999999987654210 011112799999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeeccCCCe
Q 006126 387 SHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRI 459 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~~~~~v 459 (660)
++|++++ |++|++||+.++ +++..+.+|...|.+++|+|++ +|++|+.|+.|++||+.++. ++..+.+|...|
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 8999999 999999999876 4677889999999999999999 99999999999999998763 456778899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 538 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~ 538 (660)
.+++|+|++++|++++.|++|++||.+++... ... ...+|. ..|.+++|+|+|++|++ +.|++|++||....
T Consensus 154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 154 KHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEECT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccccC
Confidence 99999999999999999999999999875422 222 456777 79999999999999999 59999999996322
Q ss_pred ---------------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee----EEEeecccccCCCCc
Q 006126 539 ---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYAQPGTI 599 (660)
Q Consensus 539 ---------------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~----~~~~~~~~~~~~gh~ 599 (660)
+++.++.+ .|...|.+++|+|++..|++++.|+.|++|+...+.. ...+.. ....+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~h- 302 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA--HLHQAH- 302 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE--EETTSS-
T ss_pred CCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe--eecccc-
Confidence 22333433 3688999999999999999999999999999876531 111111 112255
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
...|+ +++|+|+++.+||+|+.||+|++|++.+++.
T Consensus 303 ~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 303 SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 44455 9999994336999999999999999988765
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-40 Score=350.46 Aligned_cols=380 Identities=18% Similarity=0.263 Sum_probs=248.3
Q ss_pred cccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc--HHHHHHHHhcCchHhHHHhhhhhcCCCCCcchhhhHHHHH
Q 006126 60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQ 137 (660)
Q Consensus 60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~--~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 137 (660)
+...+++|++|+|+|||+|+||.+++.+|++|+++.++ ...+...++++.|+.++++-+.+..++
T Consensus 3 ~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~------------- 69 (410)
T 1vyh_C 3 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELE------------- 69 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHH-------------
Confidence 45678999999999999999999999999999998875 556677788889988877543330000
Q ss_pred HHHHHHHhhhccCCCCchhhhhchhhhhhhhhccCcccccccCCCccchhHHHHHHhhhcceeeeeeeecCCCCCccccc
Q 006126 138 RQKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETIS 217 (660)
Q Consensus 138 ~q~~lell~~~e~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s 217 (660)
.+.-+. .+.+.. ..|. +.. .+...| .+.
T Consensus 70 -~~~~~~-------------------------------~~~~~~-~~~~-~~~---~~~~~~--------~~~------- 97 (410)
T 1vyh_C 70 -SKLNEA-------------------------------KEEFTS-GGPL-GQK---RDPKEW--------IPR------- 97 (410)
T ss_dssp -----------------------------------------------------------CCC--------CCC-------
T ss_pred -HHHHHH-------------------------------HHHHhc-cCCc-ccc---CCcccc--------ccC-------
Confidence 000000 000000 0000 000 000000 000
Q ss_pred ccCccccchhhhccccccCCCCCCCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCC
Q 006126 218 LKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE 296 (660)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~ 296 (660)
......+.||.. |.++ .|+|+++++++|+.||+|++||+.+
T Consensus 98 ------------------------~~~~~~l~gh~~~V~~~-----------~~~p~~~~l~s~s~Dg~i~vwd~~~--- 139 (410)
T 1vyh_C 98 ------------------------PPEKYALSGHRSPVTRV-----------IFHPVFSVMVSASEDATIKVWDYET--- 139 (410)
T ss_dssp ------------------------SSCSCEEECCSSCEEEE-----------EECSSSSEEEEEESSSCEEEEETTT---
T ss_pred ------------------------CCceEeecccCCcEEEE-----------EEcCCCCEEEEEeCCCeEEEEECCC---
Confidence 111223456655 4444 8999999999999999999999985
Q ss_pred CcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC
Q 006126 297 PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK 376 (660)
Q Consensus 297 ~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 376 (660)
+.+.. .+. +|.+.|.+++|+|+|++|++|+.||+|++||+.+... +..+ .+|.
T Consensus 140 -~~~~~-~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---------------------~~~~--~~h~ 192 (410)
T 1vyh_C 140 -GDFER-TLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------IRTM--HGHD 192 (410)
T ss_dssp -CCCCE-EEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------EECC--CCCS
T ss_pred -CcEEE-EEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------eEEE--cCCC
Confidence 33332 243 3999999999999999999999999999999866543 2211 1799
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
..|.+++|+ +++|++|+ |++|++||+.++.++.++.+|...|.++.++|++ .|++|+.|+.|++||+.++++...+
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 999999999 88999999 9999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eccCCCeEEEEEeCC--------------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEE
Q 006126 453 KGHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 512 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~--------------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 512 (660)
.+|...|.+++|+|+ |.+|++|+.|++|++||++++.. +. ...+|. ..|.+
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-----~~-~~~~h~---~~v~~ 343 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----LM-TLVGHD---NWVRG 343 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-----EE-EEECCS---SCEEE
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce-----EE-EEECCC---CcEEE
Confidence 999999999999996 67899999999999999998643 33 455777 68999
Q ss_pred EEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 513 IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 513 ~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
++|+|+|++|++ +.|+.|++||+.+++++..+.. |...|++++|+|++.+|++|+.||.|+||+++
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999 5899999999999999888865 68899999999999999999999999999863
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.6e-40 Score=340.22 Aligned_cols=280 Identities=14% Similarity=0.188 Sum_probs=243.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|++++|+|++++|++|+.||+|++||..+..... ... .|...|.+++|+ +
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---------------------~~~--~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---------------------AVT--MPCTWVMACAYAPSG 118 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---------------------EEE--CSSSCCCEEEECTTS
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---------------------EEe--cCCCCEEEEEECCCC
Confidence 399999999999999999999999999999976654311 111 477889999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126 387 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~------~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
.+|++++ |+.+++|++... .....+..|...|.+++|+|++ .|++++.|++|++||+++++.+..+.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 9999999 999999998643 3455677899999999999999 9999999999999999999999999999999
Q ss_pred eEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeC
Q 006126 459 ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 535 (660)
Q Consensus 459 v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~ 535 (660)
|.++.|+| ++++|++|+.||+|++||+++++. +. ...+|. ..|.+++|+|++.++++ +.|++|++||+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-----VQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 99999987 578999999999999999998643 33 355677 68999999999999999 58999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. || ...+. +++|+| ++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-------~h-~~~v~--~l~~sp-dg 338 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-------GH-ENRVS--TLRVSP-DG 338 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-------CC-SSCEE--EEEECT-TS
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-------CC-CCcEE--EEEECC-CC
Confidence 998887777654445689999999999999999999999999999998887765 44 44455 999999 89
Q ss_pred CEEEEEeCCCeEEEEe
Q 006126 616 NRIALGLTNGRVHVIE 631 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~ 631 (660)
.+|++|+.||+|+||+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 9999999999999996
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9e-40 Score=334.62 Aligned_cols=292 Identities=16% Similarity=0.182 Sum_probs=244.2
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
+|.+.|.+++|+|++ ++|++|+.|++|++|++...... .+..+..+. +|...|.+++|+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~~~~s~d 76 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFK--GHSHIVQDCTLTAD 76 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEE--CCSSCEEEEEECTT
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEe--CCcccEEEEEECCC
Confidence 499999999999965 89999999999999998643220 011111111 799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
+.+|++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++ ++++..+.+|...|.++.
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 88999999 9999999999999999999999999999999999 99999999999999986 567888899999999999
Q ss_pred EeCC------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 006126 464 YSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 536 (660)
Q Consensus 464 ~sp~------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~ 536 (660)
|+|. +..+++++.|+.|++||+++++. .. ...+|. ..|.+++|+|+|++|++ +.|+.|++||+.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-----EA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEE-----EE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchh-----he-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 9985 45899999999999999998542 22 355777 79999999999999999 589999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
+++.+..+.. ...|.+++|+|++.++++++.+ .+++|++..+.....+......... .....+.+++|+| ||+
T Consensus 227 ~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp-dg~ 299 (319)
T 3frx_A 227 AKKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSA-DGQ 299 (319)
T ss_dssp TTEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG--GGCCCEEEEEECT-TSS
T ss_pred CCcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc--CcCcceeEEEECC-CCC
Confidence 9999888854 5689999999999999988754 5999999998877766532111001 1112345999999 899
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 006126 617 RIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~ 635 (660)
+|++|+.||+|+||++.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-39 Score=337.05 Aligned_cols=291 Identities=14% Similarity=0.123 Sum_probs=244.0
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
....+.||.. |.++ .|+||+++|++|+.||+|++||... ......+. . |...|.+++|+|+
T Consensus 56 ~~~~l~gH~~~V~~~-----------~~s~d~~~l~s~s~Dg~v~vWd~~~---~~~~~~~~--~--~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCM-----------DWCKDKRRIVSSSQDGKVIVWDSFT---TNKEHAVT--M--PCTWVMACAYAPS 117 (354)
T ss_dssp EEEEEECCSSCEEEE-----------EECTTSSEEEEEETTSEEEEEETTT---CCEEEEEE--C--SSSCCCEEEECTT
T ss_pred EEEEecCCCCeEEEE-----------EECCCCCEEEEEeCCCeEEEEECCC---CCcceEEe--c--CCCCEEEEEECCC
Confidence 4456777876 5555 9999999999999999999999874 22223322 2 7889999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i 399 (660)
|.++++++.|+.+++|++....... ........ .+|...|.+++|+ +..|++++ |++|++
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV--AMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE--EECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCEEEEeeCCCCEEEEEEecccccc---------------ccccceee--eccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 9999999999999999976442100 00011111 1599999999999 77999999 999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 476 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 476 (660)
||+.+++++..+.+|...|.+++|+| ++ .|++|+.|+.|++||+++++++..+.+|...|++++|+|++.+|++++.
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 99999999999999999999999987 46 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 555 (660)
|++|++||++++....... ...+. ..+.+++|+|+|+++++ +.|+.|++||+.+++.+..+.+ |...|++
T Consensus 261 D~~v~lwd~~~~~~~~~~~----~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~--h~~~v~~ 331 (354)
T 2pbi_B 261 DATCRLYDLRADREVAIYS----KESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG--HENRVST 331 (354)
T ss_dssp TSCEEEEETTTTEEEEEEC----CTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC--CSSCEEE
T ss_pred CCeEEEEECCCCcEEEEEc----CCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC--CCCcEEE
Confidence 9999999999854321110 11122 46889999999999999 4899999999999998888764 7899999
Q ss_pred EEEccCCCEEEEEecCCeEEEEE
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
++|+|||++|++|+.||.|+||+
T Consensus 332 l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 332 LRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999996
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-38 Score=352.08 Aligned_cols=345 Identities=18% Similarity=0.233 Sum_probs=285.1
Q ss_pred CCCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEE
Q 006126 241 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 319 (660)
Q Consensus 241 ~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~ 319 (660)
++..++.+.||.. |..+ .|+|||++||+++.|++|+|||..+ ..... +. +|...|.+++|
T Consensus 46 ~~~~~~~l~gh~~~V~~l-----------~fspdg~~las~~~d~~i~vWd~~~----~~~~~--~~--~~~~~v~~~~~ 106 (577)
T 2ymu_A 46 NGQLLQTLTGHSSSVWGV-----------AFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LT--GHSSSVRGVAF 106 (577)
T ss_dssp TSCEEEEEECCSSCEEEE-----------EECTTSSEEEEEETTSCEEEEETTS----CEEEE--EC--CCSSCEEEEEE
T ss_pred CCCEEEEEeCCCCCEEEE-----------EECCCCCEEEEEeCCCEEEEEECCC----CEEEE--EE--CCCCCEEEEEE
Confidence 4667777888876 5554 9999999999999999999999752 33333 43 38999999999
Q ss_pred ecCCCEEEEEECCCcEEEEeccCCceeee---------------------------------------------------
Q 006126 320 SHSGDFLVALTQTATHKLWKWQSNKQSLE--------------------------------------------------- 348 (660)
Q Consensus 320 spdg~~l~s~s~dg~i~vw~~~~~~~~~~--------------------------------------------------- 348 (660)
+|+|++|++++.|+.+++|+.........
T Consensus 107 s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 186 (577)
T 2ymu_A 107 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 186 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEE
T ss_pred CCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeee
Confidence 99999999999999999999643321100
Q ss_pred ----------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC
Q 006126 349 ----------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 415 (660)
Q Consensus 349 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~ 415 (660)
..+.+..+++|+... ..+.... +|...|.+++|+ +.+|++++ |+.|++||. +++.+..+.+|.
T Consensus 187 ~~~~~~~~l~~~~~d~~v~~w~~~~-~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~ 262 (577)
T 2ymu_A 187 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 262 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTS-CEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS
T ss_pred eecCCCCEEEEEcCCCEEEEEeCCC-cEEEEEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC
Confidence 122234567888543 4433332 799999999999 78999999 999999996 477888999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126 416 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 494 (660)
..|.+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------ 335 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------ 335 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------
Confidence 999999999999 9999999999999996 46788889999999999999999999999999999999998763
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~ 573 (660)
.+. ...+|. ..+.+++|+|+++++++ +.|+.|++||. +++.+..+.. |...|.+++|+|||++|++++.|+.
T Consensus 336 ~~~-~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 336 HLQ-TLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSE
T ss_pred eeE-EEeCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC--CCCCeEEEEECCCCCEEEEEeCCCE
Confidence 233 345666 68999999999999999 58899999996 6777777764 6889999999999999999999999
Q ss_pred EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 574 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 574 I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
|++||. +++.+..+. +| ...+. +++|+| |+.+|++++.|++|++|+...
T Consensus 409 v~~~~~-~~~~~~~~~-------~~-~~~v~--~~~~s~-d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 409 VKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEECT-TCCEEEEEE-------CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEETTS
T ss_pred EEEEeC-CCCEEEEec-------CC-CCCeE--EEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 999996 466666665 33 44455 999999 899999999999999999754
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-40 Score=347.20 Aligned_cols=305 Identities=13% Similarity=0.103 Sum_probs=247.7
Q ss_pred CCccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe
Q 006126 242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 320 (660)
Q Consensus 242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s 320 (660)
....+.+.||.. |.++ .|+|+|++|++|+.||+|+|||..+ +.... .+.. |...|.+++|+
T Consensus 56 ~~~~~~l~gH~~~V~~~-----------~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~-~~~~--h~~~v~~~~~s 117 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSL-----------DWTPEKNWIVSASQDGRLIVWNALT----SQKTH-AIKL--HCPWVMECAFA 117 (380)
T ss_dssp CEEEEEECCCSSCEEEE-----------EECTTSSCEEEEETTSEEEEEETTT----TEEEE-EEEC--CCTTCCCCEEC
T ss_pred eEEeecccccccEEEEE-----------EEcCCCCEEEEEeCCCeEEEEECCC----Cccce-EEec--CCCCEEEEEEC
Confidence 345567788877 5555 9999999999999999999999974 33222 2333 89999999999
Q ss_pred cCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCc
Q 006126 321 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGK 396 (660)
Q Consensus 321 pdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~ 396 (660)
|+|++|++|+.|+.+++|++....... ....... ...+|...|.++.|. +..|++|+ |++
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~--------------~~~~~~~--~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRD--------------GNMPVSR--VLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCC--------------CSSTTCC--BCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred CCCCEEEEeeCCCcEEEEECCCCcccc--------------CCcccee--eccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 999999999999999999986543200 0000111 112799999999998 45799999 999
Q ss_pred EEEEECCCCeEEEEE-----cCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCC-CCceeeEeeccCCCeEEEEEeCCC
Q 006126 397 ISIFSLETFQTLATF-----ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSL 468 (660)
Q Consensus 397 I~iwd~~~~~~~~~~-----~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~ 468 (660)
|++||+.+++.+..+ .+|...|.+++|++ ++ .|++|+.|+.|++||++ .++.+..+.+|.+.|++++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999998887 57889999999987 66 99999999999999998 457788999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecC
Q 006126 469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 546 (660)
++|++++.||+|++||++++........... ...+. ..|.+++|+|+|++++++ .||.|++||+.+++.+..+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 9999999999999999999764432211100 01111 358999999999999995 899999999999888766632
Q ss_pred --CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 547 --DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 547 --~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
..|...|.+++|+|+|++|++|+.||.|+||++...+
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 3478999999999999999999999999999998654
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-39 Score=330.40 Aligned_cols=290 Identities=16% Similarity=0.228 Sum_probs=241.4
Q ss_pred ccccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126 246 DASSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 323 (660)
Q Consensus 246 ~~~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg 323 (660)
..+.||.. |.++ .|+|++ ++|++|+.|++|++|++.+...........+. +|...|.+++|+|+|
T Consensus 11 ~~l~gH~~~V~~l-----------~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 11 GTLEGHNGWVTSL-----------ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTADG 77 (319)
T ss_dssp EEECCCSSCEEEE-----------EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTTS
T ss_pred EEEccccceEEEE-----------EccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCCC
Confidence 34667776 5554 889865 89999999999999998742111111122343 499999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 400 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw 400 (660)
++|++|+.|++|++||+.+++. +..+. +|...|.+++|+ +.+|++++ |++|++|
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATGET---------------------YQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp SEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCe---------------------eEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999876653 11111 799999999999 88999999 9999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCC------C-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE
Q 006126 401 SLETFQTLATFANPPPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 473 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp~------~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 473 (660)
|+. ++++..+.+|...|.++.|+|. + .+++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++
T Consensus 135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence 996 5678888999999999999984 4 7999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC------
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------ 547 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~------ 547 (660)
++.||+|++||+++++.. . ....+ ..|.+++|+|++.+++++.++.+++|++..+..+..+...
T Consensus 214 ~~~dg~i~iwd~~~~~~~-----~-~~~~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 214 AGKDGEIMLWNLAAKKAM-----Y-TLSAQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp EETTCEEEEEETTTTEEE-----E-EEECC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred EeCCCeEEEEECCCCcEE-----E-EecCC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccccc
Confidence 999999999999986533 2 22233 4799999999999999987888999999887766665432
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
.+...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 23567999999999999999999999999998764
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-39 Score=341.72 Aligned_cols=320 Identities=17% Similarity=0.188 Sum_probs=263.4
Q ss_pred eEecCCCC-EEEEEeCCCcEEEEec----cCcCCCc---ceeeeecCCC------CCCCCeEEEEEecCCCEEEEEECCC
Q 006126 268 STSLPDAD-SAVCAKSLEKSVNLKL----QLINEPS---ECRTLLLPDN------SFGGRVVRLIYSHSGDFLVALTQTA 333 (660)
Q Consensus 268 ~~~spdg~-~l~s~~~dg~i~iwd~----~~~~~~~---~~~~~~l~~~------~h~~~V~~~~~spdg~~l~s~s~dg 333 (660)
+.|+|+|+ +|++++.||.|++|++ .++...- ....+..+.. +|.+.|.+++|+|+|++|++++.||
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 130 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENG 130 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTS
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 49999999 9999999999999999 6422000 1122111111 2577999999999999999999999
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT 410 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~ 410 (660)
.|++|+.... . +.... +|...|.+++|+ +.+|++++ |+.|++||+.+++.+..
T Consensus 131 ~i~i~~~~~~-~---------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 131 ELRLWNKTGA-L---------------------LNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp CEEEEETTSC-E---------------------EEEEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred eEEEEeCCCC-e---------------------eeecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 9999983222 1 11111 689999999999 88999999 99999999999999999
Q ss_pred EcCCCCC---------------eEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 411 FANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 411 ~~~~~~~---------------v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
+..+... +.+++|+|++.+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 9877776 8999999988888999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 554 (660)
.|+.|++||+++++. +. ...+|. ..|.+++|+|++ ++++ +.|+.|++||+++++.+..+.. |...|.
T Consensus 267 ~d~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~ 334 (425)
T 1r5m_A 267 DDGTLRIWHGGNGNS-----QN-CFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIF 334 (425)
T ss_dssp TTSCEEEECSSSBSC-----SE-EECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEE
T ss_pred CCCEEEEEECCCCcc-----ce-EecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEE
Confidence 999999999998532 23 344565 689999999999 7776 6899999999999998888865 588999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCCe--------------------eEEEeecccccCCCCcCc-ccceEEEEEecC
Q 006126 555 YATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAHPL 613 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~gh~~~-~v~~~~v~~sp~ 613 (660)
+++|+|++++|++++.||.|++||+.+++ .+..+. +|... .+. +++|+|
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~--~~~~s~- 404 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-------SSQDNDYIF--DLSWNC- 404 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-------CTTCCCCEE--EEEECT-
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-------CcccCCceE--EEEccC-
Confidence 99999999999999999999999999887 566655 33222 444 999999
Q ss_pred CCCEEEEEeCCCeEEEEeCC
Q 006126 614 EPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 614 d~~~l~s~s~Dg~v~iw~~~ 633 (660)
++.+|++++.||.|++|++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 89999999999999999985
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-38 Score=324.68 Aligned_cols=283 Identities=19% Similarity=0.248 Sum_probs=243.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|...|.+++|+|+|++|++++.||.|++|+..+++. .... .+|...|.+++|+ +
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKTI--SGHKLGISDVAWSSDS 77 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEEE--CCCSSCEEEEEECTTS
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chhh--ccCCCceEEEEEcCCC
Confidence 4999999999999999999999999999998766543 1111 1699999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 464 (660)
++|++++ |+.|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++||+++++.+..+..|...|.++.|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeee
Q 006126 465 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 543 (660)
+|+++++++++.||.|++||+++++.. ......+. ..+..++|+|+++++++ +.|+.|++||+++++.+..
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCL-----KTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEE-----EEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcee-----eEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 999999999999999999999985432 22333444 57999999999999999 5899999999999999888
Q ss_pred ecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 544 LVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
+..+..........++ +++.+|++|+.||.|++||+.+++.+..+. || ...+. +++|+| ++.++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~l~s~~ 298 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-------GH-TDVVI--STACHP-TENIIASAA 298 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECS-SSSEEEEEE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------cc-CCcEE--EEeecC-cCCceEEEE
Confidence 8664322222333444 788999999999999999999999888876 44 44444 999999 899999997
Q ss_pred --CCCeEEEEeCC
Q 006126 623 --TNGRVHVIEPL 633 (660)
Q Consensus 623 --~Dg~v~iw~~~ 633 (660)
.|++|++|+..
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999974
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-39 Score=328.66 Aligned_cols=314 Identities=14% Similarity=0.167 Sum_probs=261.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|||++++++..++.+..|+... ........ +|...|.+++|+|++++|++++ ||.|++|++.+.....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR-----HARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS-----EEEEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred EEECCCCCEEEeecCCCcEeccccCC-----ccccceec--cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 49999999999998888777775542 22222222 3899999999999999999998 9999999987664311
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI 422 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~ 422 (660)
.+......+|...|.+++|+ +++|++++ ||.|++||+.+++ ....+..|...+.+++
T Consensus 87 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 87 ------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp ------------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred ------------------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 00000111588999999999 88999999 9999999999887 5667788999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 501 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 501 (660)
|+|++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++.....
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------- 221 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------- 221 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-------
Confidence 99999 9999999999999999999999999999999999999999999999999999999999986543221
Q ss_pred ccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 502 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 502 ~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
.+. ..+.+++|+|+++++++ +.++.|++||+++++.. .+. .|...|.+++|+|++++|++++.||.|++||+.
T Consensus 222 ~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 233 58999999999999999 47899999999887754 332 468999999999999999999999999999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
+++...... | ...+. +++|+| ++++|++++.||.|++|++
T Consensus 296 ~~~~~~~~~--------~-~~~v~--~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQSK--------E-SSSVL--SCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEEec--------C-CCcEE--EEEECC-CCCEEEEecCCCeEEEEEE
Confidence 998775542 1 33344 999999 8999999999999999996
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-39 Score=342.88 Aligned_cols=290 Identities=14% Similarity=0.215 Sum_probs=245.0
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|++++|+|+|++|++|+.||+|+|||..++... .... +|...|.+++|+ +
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~--~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIK--LHCPWVMECAFAPNG 120 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEE--CCCTTCCCCEECTTS
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEe--cCCCCEEEEEECCCC
Confidence 49999999999999999999999999999998766531 1111 688999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCCe-------EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe----
Q 006126 387 SHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL---- 452 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~-------~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~---- 452 (660)
++|++|+ |+.|++||+.+.. ....+.+|...|.++.|+|++ .|++|+.|++|++||+.+++.+..+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 8999999 9999999987532 345577899999999999986 8999999999999999999988877
Q ss_pred -eccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc
Q 006126 453 -KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 529 (660)
Q Consensus 453 -~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~ 529 (660)
.+|...|.++.|++ ++.++++|+.|++|++||++... ..+. ...+|. +.|.+++|+|++++|++ +.|++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEECSSSC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEcCCCe
Confidence 67999999999987 88999999999999999998522 2333 456787 79999999999999999 49999
Q ss_pred EEEEeCCCCceeeeecCCC-----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126 530 IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
|++||+++++.+..+.... +...|++++|+|+|++|++|+.||.|++||+.+++....+.. ...+| ...|.
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~h-~~~v~ 348 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT---LQNSH-EGRIS 348 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC---SCSSC-CCCCC
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec---ccCCC-CCceE
Confidence 9999999999887775421 123589999999999999999999999999999987776532 11244 44555
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 605 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+++|+| ++.+|++|+.||+|+||++...+
T Consensus 349 --~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 349 --CLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp --EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred --EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 999999 89999999999999999997653
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=329.23 Aligned_cols=293 Identities=13% Similarity=0.127 Sum_probs=231.3
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.++|+|||++||+|+.|++|+|||..+ ...........+|...|.+++|+|+|++|++|+.|+++++|+.......
T Consensus 21 ~l~~sp~g~~las~~~D~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 21 FLAWNPAGTLLASCGGDRRIRIWGTEG----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE 96 (345)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEEEET----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCC----CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence 359999999999999999999999974 3222111112359999999999999999999999999999997655321
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATY 420 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~ 420 (660)
.+..+ .+|...|.+++|+ +++|++++ |+.|++||+.++ .++..+.+|...|.+
T Consensus 97 -------------------~~~~~--~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 155 (345)
T 3fm0_A 97 -------------------CVTTL--EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155 (345)
T ss_dssp -------------------EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred -------------------EEEEc--cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence 11111 1799999999999 88999999 999999999875 456678899999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEeCCCCc--eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee------
Q 006126 421 FILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL------ 491 (660)
Q Consensus 421 v~~sp~~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~------ 491 (660)
++|+|++ +|++|+.|+.|++||.++++ +...+.+|...|++++|+|+|++|++++.|++|++||.......
T Consensus 156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 9999999 99999999999999998775 45778899999999999999999999999999999997432110
Q ss_pred ----eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce----eee---ecCCCCCCCeEEEEEc
Q 006126 492 ----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH----TSQ---LVPDKMDLPITYATYS 559 (660)
Q Consensus 492 ----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~----~~~---~~~~~~~~~v~~~~~s 559 (660)
....+.+....|. ..|.+++|+|++..+++ +.|+.|++|+...+.. ... .....|...|++++|+
T Consensus 236 ~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp ---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred ccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 0112222222355 68999999999999998 6999999999875431 111 1112478999999999
Q ss_pred cCC-CEEEEEecCCeEEEEECCCCeeEEE
Q 006126 560 CDG-KCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 560 ~dg-~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
|++ .+|++|+.||.|++|++.+++....
T Consensus 313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 313 PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 998 5999999999999999998875543
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=348.26 Aligned_cols=331 Identities=11% Similarity=0.061 Sum_probs=263.9
Q ss_pred eEecCCCC-EEEEE----------eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 006126 268 STSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 336 (660)
Q Consensus 268 ~~~spdg~-~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~ 336 (660)
+.|+|+|+ +++++ +.|+.|++||+........... ..|...|.+++|+|++++|++++.||.|+
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-----LQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-----CCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-----EecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 38999997 99999 8899999999985221111111 23889999999999999999999999999
Q ss_pred EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCe------
Q 006126 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ------ 406 (660)
Q Consensus 337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~------ 406 (660)
+|++..... ....+.... +|...|.+++|+ +.+|++++ ||.|++||+.+++
T Consensus 93 vw~~~~~~~-----------------~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 93 LYSTNEANN-----------------AINSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp EECCSSTTS-----------------CCCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred Eeecccccc-----------------cccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 999876211 001111111 699999999999 57899999 9999999999876
Q ss_pred EEEE---EcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceeeEeecc------CCCeEEEEEeCCC-CEEEEE
Q 006126 407 TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLVSS 474 (660)
Q Consensus 407 ~~~~---~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~-~~l~s~ 474 (660)
.... +..|...|.+++|+|+ + .|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 3332 3578899999999999 5 9999999999999999999999888776 7899999999997 689999
Q ss_pred eCCC---cEEEEEcCCCeeeeceeeeeeee-ccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCCCCceeeeecCCC
Q 006126 475 GADA---QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 548 (660)
Q Consensus 475 s~dg---~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~ 548 (660)
+.|+ .|++||++++. ..+. ... +|. ..|.+++|+| ++.+|++ +.|+.|++||+++++.+..+..
T Consensus 234 ~~d~~~~~i~~~d~~~~~----~~~~-~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-- 303 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNAN----TPLQ-TLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-- 303 (416)
T ss_dssp ECCSSSCCCCEEETTSTT----SCSB-CCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--
T ss_pred ECCCCCceEEEEeCCCCC----CCcE-EeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--
Confidence 9998 99999999842 2333 344 666 6899999999 8999998 5899999999999999888865
Q ss_pred CCCCeEEEEEccCC-CEEEEEecCCeEEEEECCCCeeEEEeec---------ccccCCCC------------------cC
Q 006126 549 MDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------IS 600 (660)
Q Consensus 549 ~~~~v~~~~~s~dg-~~l~sg~~dg~I~iwd~~~~~~~~~~~~---------~~~~~~gh------------------~~ 600 (660)
|...|.+++|+|++ .+|++++.||.|++||+.++........ ..+...+. +.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 68899999999999 8999999999999999987654322110 00000000 13
Q ss_pred cccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
..+. +++|+| +|++|++++.||+|+||++.+.
T Consensus 384 ~~~~--~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSP--AAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSC--CCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred CCcc--ceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 3333 899999 8999999999999999999864
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=326.74 Aligned_cols=279 Identities=15% Similarity=0.100 Sum_probs=224.3
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccC--------cCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEe
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQL--------INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 339 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~ 339 (660)
+.|+|||++|++++ |+++++||... ......+... ..|...|.+++|+|++ .|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG----VQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE----EEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee----eccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 49999999999887 77888887421 0000111110 1157789999999986 588999999999999
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 416 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~ 416 (660)
+.+++.... .. ....+|...|++++|+ +++|++|+ |++|++||+.+++++..+.+|..
T Consensus 110 ~~~~~~~~~------------------~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 110 LDENETLIV------------------SK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ECTTSSCEE------------------EE-EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ccCCCceeE------------------ee-ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 887654111 00 0111799999999999 88999999 99999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeee
Q 006126 417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL 491 (660)
Q Consensus 417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~ 491 (660)
.|.+++|+|++ .|++|+.|++|++||+++++....+. .|...+.+++|+| ++++|++|+.||+|++||+++++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-- 248 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-- 248 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--
Confidence 99999999998 78999999999999999999888774 3566799999999 46788999999999999999854
Q ss_pred eceeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEE
Q 006126 492 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS 568 (660)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg 568 (660)
.+. .+.+|. ..|++++|+|++ ++|++ +.|++|++||+.+++++. +. .|...|++++|+|+++ +|++|
T Consensus 249 ---~~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 ---CVL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp ---CCE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEE
T ss_pred ---EEE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEE
Confidence 333 456777 699999999998 46777 589999999999887654 33 4799999999999986 57799
Q ss_pred ecCCeEEEEECCCCe
Q 006126 569 CKSGHVKVFDTSTLE 583 (660)
Q Consensus 569 ~~dg~I~iwd~~~~~ 583 (660)
+.||.|++|++.+..
T Consensus 319 s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEEECCC--
T ss_pred cCCCeEEEEECCCCC
Confidence 999999999998754
No 27
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.7e-38 Score=324.24 Aligned_cols=292 Identities=16% Similarity=0.187 Sum_probs=232.7
Q ss_pred CCCCCeEEEEE-----ec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126 309 SFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 382 (660)
Q Consensus 309 ~h~~~V~~~~~-----sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 382 (660)
+|.+.|++++| ++ ++++|++|+.|++|++|++....... ..+.....+ .+|...|.++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l--~~h~~~V~~~ 82 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKAL--TGHNHFVSDL 82 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEE--CCCSSCEEEE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchh--ccCCCceEEE
Confidence 49999999999 77 99999999999999999987543200 011111111 2799999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee---cc
Q 006126 383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GH 455 (660)
Q Consensus 383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~---~~ 455 (660)
+|+ +.++++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.. ....... +|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCC
Confidence 999 88999999 9999999999999999999999999999999999 999999999999999984 3333333 68
Q ss_pred CCCeEEEEEeCCC----------CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126 456 QNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 524 (660)
Q Consensus 456 ~~~v~~l~~sp~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~- 524 (660)
...|.++.|+|++ .++++++.|+.|++||... .... ...+|. ..|.+++|+|+|++|++
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKYIATG 231 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCEEEEE
Confidence 8999999999987 7899999999999999543 2222 455777 68999999999999999
Q ss_pred EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE--Eeecccc----cCCC
Q 006126 525 IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAY----AQPG 597 (660)
Q Consensus 525 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~--~~~~~~~----~~~g 597 (660)
+.|+.|++||+.+ ......+. +...|.+++|+|++.++++| .|+.|++||+.+++... .+..... ...|
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 5899999999954 44444442 35679999999999988755 57889999998876544 3321110 1123
Q ss_pred CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
| ... +.+++|+| ++++|++|+.||+|++|++.++
T Consensus 308 ~-~~~--v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 K-NPQ--CTSLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp S-CCC--EEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred C-CCc--eEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 3 333 44999999 8999999999999999998765
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-38 Score=322.71 Aligned_cols=290 Identities=16% Similarity=0.130 Sum_probs=224.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.++|++++|+|+ +|++|+.|++|++|++..+... ........+|...|.+++|+ +
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-------------------~~~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-------------------LIDVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-------------------EEEEECTTCCCSCEEEEEECTTS
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-------------------EEEEEecCCccCCEEEEEECCCC
Confidence 39999999999998 9999999999999998764320 11111011499999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC----CceeeEee
Q 006126 387 SHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLK 453 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~----~~~~~~~~ 453 (660)
.+|++++ |++|++||+.. .+....+.+|...|.+++|+|++ +|++|+.|++|++||++. .+++..+.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 8999999 99999999853 45677888999999999999999 999999999999999943 25677888
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC--CcEEEE-EecCcE
Q 006126 454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQI 530 (660)
Q Consensus 454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~-~~d~~i 530 (660)
+|...|.+++|+|++.+|++++.|++|++||..++.. ..+. ...+|. ..|.+++|+|+ +.+|++ +.|++|
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 9999999999999999999999999999999877431 2333 456787 79999999998 678888 589999
Q ss_pred EEEeCCCC--------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126 531 DVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 602 (660)
Q Consensus 531 ~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 602 (660)
++||+..+ .+...+.. .|...|.+++|++++ +|++++.||.|+|||..+++....... ..+|....
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~h~~~~ 297 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR----ALCHGVYE 297 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE----SCTTTTSC
T ss_pred EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc----ccccccce
Confidence 99998754 23333332 378899999999765 899999999999999988742211110 11443324
Q ss_pred cceEEEEEecC-CCCEEEEEeCCCeEEEEeCCC
Q 006126 603 LYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 603 v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
++ +++|+|. ++.+||+|+.||+|+||++..
T Consensus 298 v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 298 IN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 55 9999994 478999999999999999865
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.5e-38 Score=330.73 Aligned_cols=281 Identities=11% Similarity=0.054 Sum_probs=224.6
Q ss_pred eEecCCCCEEEEEeC------CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc
Q 006126 268 STSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 341 (660)
Q Consensus 268 ~~~spdg~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~ 341 (660)
+.|||||++||+|+. |+.+++|+...+......... . .+|...|.+++|+|++. +++++.||+|+|||+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~--~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-G--VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEIL 123 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-E--EECSSCEEEEEEETTTE-EEEEETTSCEEEC---
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-c--CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecc
Confidence 499999999999997 678999988653222222111 1 23889999999999986 5678889999999987
Q ss_pred CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe
Q 006126 342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 418 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v 418 (660)
+++.... ......+|...|++++|+ +++|++++ |+.|++||+.+++++..+.+|...|
T Consensus 124 ~~~~~~~-------------------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 124 EKESLLV-------------------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp -----CC-------------------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ccceeEE-------------------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 6643110 000111699999999999 88999999 9999999999999999999999999
Q ss_pred EEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126 419 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS 493 (660)
Q Consensus 419 ~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~ 493 (660)
++++|+|++ .+++++.|+.|++||+++++....+. .|...+.+++|+|+ +.+|++|+.|+.|++||+++++
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---- 260 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---- 260 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----
Confidence 999999988 89999999999999999988776554 46778999999997 5689999999999999999854
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCC-cEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEEec
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCK 570 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~ 570 (660)
.+. ...+|. ..|.+++|+|++ ++|++ +.|++|+|||+++++++..+ .|...|++++|+| |+++|++|+.
T Consensus 261 -~~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 261 -SAQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp -GCE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEET
T ss_pred -EeE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC
Confidence 333 455676 689999999987 46777 58999999999999887665 4799999999998 8999999999
Q ss_pred CCeEEEEECCCCe
Q 006126 571 SGHVKVFDTSTLE 583 (660)
Q Consensus 571 dg~I~iwd~~~~~ 583 (660)
||.|++|++.+..
T Consensus 333 Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 DHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEECC---
T ss_pred CCeEEEEECCCCC
Confidence 9999999997643
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-37 Score=316.92 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=229.4
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|||++|++++.||+|++||+.+ ...... +.. |..+|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~---~~~~~~--~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-- 89 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYET---QVEVRS--IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT---TEEEEE--EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCC---CceeEE--eec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE--
Confidence 39999999999999999999999984 222333 333 899999999999999999999999999999876654
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~ 423 (660)
+..+. +|...|.+++|+ +.+|++|+ |++|++||+.++ .....+.+|...|.+++|
T Consensus 90 -------------------~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred -------------------EEEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 11111 799999999999 88999999 999999999887 556778899999999999
Q ss_pred cC-CC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 424 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 424 sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
+| ++ .|++|+.|++|++||+.++.....+. +|...+..+.|+| ++.+|++++.|++|++||+++++ .+.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~- 222 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA- 222 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----EEE-
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----cce-
Confidence 99 45 99999999999999998887666554 4668899999987 77899999999999999999854 333
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC--EEEEEecCCeEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVK 575 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~sg~~dg~I~ 575 (660)
...+|. ..|.+++|+|++.+|++ +.|++|++||+.+++.+.++.. |...+.+++|+|++. ++++|+.|| +.
T Consensus 223 ~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~asg~~~g-~~ 296 (304)
T 2ynn_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNG-FT 296 (304)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEEECTTCGGGCEEEEETTE-EE
T ss_pred eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEEECCCCCceEEEEecCCc-eE
Confidence 456787 68999999999999999 5899999999999999988865 578899999999875 577776555 77
Q ss_pred EEECCC
Q 006126 576 VFDTST 581 (660)
Q Consensus 576 iwd~~~ 581 (660)
+|++..
T Consensus 297 ~~~~~~ 302 (304)
T 2ynn_A 297 VLSLGN 302 (304)
T ss_dssp EEECC-
T ss_pred EEEecc
Confidence 888764
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-37 Score=328.46 Aligned_cols=304 Identities=13% Similarity=0.132 Sum_probs=238.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.+.|.+++|+|||++|++|+ ++.+++|++.++........... ...++. .........+...|.+++|+ ++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~--~~~~~~---~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--ANKDPE---NLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc--cccccc---cccccccCCCceeEEEEEECCCCC
Confidence 899999999999999999876 78999999987765322000000 000000 00000001244569999999 88
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
+|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++++++...+. +...+.+++|+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 99999999999999999998887776 56789999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEcCCCeeeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc---
Q 006126 466 L-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--- 539 (660)
Q Consensus 466 p-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~--- 539 (660)
| +++++++++.|+.|++||++++......... ....+|. ..|.+++|+|+|++|++ +.|+.|++||+++..
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9 8999999999999999999986543322111 0124666 68999999999999999 589999999997632
Q ss_pred ---------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126 540 ---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 540 ---------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
+...+. .|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+. || ...+. +++|
T Consensus 293 ~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~v~~ 360 (393)
T 1erj_A 293 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------GH-RNSVI--SVAV 360 (393)
T ss_dssp --------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEE
T ss_pred cccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-------CC-CCCEE--EEEe
Confidence 333443 368899999999999999999999999999999999888776 44 44455 8888
Q ss_pred ecC-----CCCEEEEEeCCCeEEEEeCCCC
Q 006126 611 HPL-----EPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 611 sp~-----d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+|. ++++||+|+.||+|+||++...
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 752 5789999999999999998643
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-37 Score=321.34 Aligned_cols=293 Identities=15% Similarity=0.181 Sum_probs=233.6
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEe-----cC-CCCEEEEEeCCCcEEEEeccCcCCCcc--eeeeecCCCCCCCCe
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTS-----LP-DADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRV 314 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~-----sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~l~~~~h~~~V 314 (660)
....+.||.. |.++ .| ++ |+++|++|+.|++|++||+........ .....+. +|...|
T Consensus 13 ~~~~l~gH~~~V~~~-----------~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSI-----------VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--GHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEE-----------EECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--CCSSCE
T ss_pred eeeeeccchhhhhhe-----------eeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--cCCCce
Confidence 3456777776 5554 55 55 999999999999999999974321111 1122243 499999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE
Q 006126 315 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 392 (660)
Q Consensus 315 ~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~ 392 (660)
.+++|+|++.++++++.|++|++||+.++.. +..+. +|...|.+++|+ +++|+++
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------~~~~~--~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTT---------------------YKRFV--GHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCE---------------------EEEEE--CCCSCEEEEEECSSTTEEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEc--CCCCcEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999876643 11111 799999999999 8899999
Q ss_pred e-CCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-----------eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126 393 S-GGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 393 ~-dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-----------~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~ 457 (660)
+ |+.|++||+.. ....... .|...|.+++|+|++ .|++++.|+.|++|| ..++....+.+|..
T Consensus 137 ~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~ 214 (343)
T 2xzm_R 137 GAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES 214 (343)
T ss_dssp ETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS
T ss_pred cCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc
Confidence 9 99999999984 3333333 688899999999874 699999999999999 45677788899999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC
Q 006126 458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 537 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~ 537 (660)
.|.+++|+|+|++|++|+.||.|++||+.... .... .. .+. ..|.+++|+|++.+++++.|+.|++||+.+
T Consensus 215 ~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~-~~-~~~---~~v~~v~~sp~~~~la~~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLT----YPQR-EF-DAG---STINQIAFNPKLQWVAVGTDQGVKIFNLMT 285 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEESSCCS----SCSE-EE-ECS---SCEEEEEECSSSCEEEEEESSCEEEEESSS
T ss_pred cceEEEECCCCCEEEEEcCCCeEEEEECCCCc----ccce-ee-cCC---CcEEEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 99999999999999999999999999995422 1222 11 122 469999999999999888999999999987
Q ss_pred Cceee--eecC---------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 538 LNHTS--QLVP---------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 538 ~~~~~--~~~~---------~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
++... .+.. ..|...|.+++|+|+|++|++|+.||.|++|++.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 76544 3321 1367889999999999999999999999999987653
No 33
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.9e-37 Score=317.22 Aligned_cols=292 Identities=16% Similarity=0.197 Sum_probs=241.0
Q ss_pred ccccCCCC-CCceeecCCCCceeeEecCC-CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCC
Q 006126 246 DASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 323 (660)
Q Consensus 246 ~~~~g~~~-v~~~~~~~~~~~~~~~~spd-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg 323 (660)
..++||.. |.++ +|+|+ +++|++|+.||+|+|||+.............+. +|...|.+++|+|+|
T Consensus 32 ~tL~GH~~~V~~v-----------~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 32 GTLKGHNGWVTQI-----------ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDG 98 (340)
T ss_dssp EEECCCSSCEEEE-----------EECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTS
T ss_pred EEECCccCCEEEE-----------EEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCC
Confidence 35788887 6665 89998 689999999999999999853322222233354 489999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 400 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iw 400 (660)
++|++++.|+.|++|+......... .. .+...+..+.++ +.+|++++ |+.+++|
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~---------------------~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRR---------------------FV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEE---------------------EE--CCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CEEEEEcccccceEEeecccceeee---------------------ec--CCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 9999999999999999876654111 01 466677788888 88899999 9999999
Q ss_pred ECCCCeEEE-EEcCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126 401 SLETFQTLA-TFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 476 (660)
Q Consensus 401 d~~~~~~~~-~~~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 476 (660)
|+....... ...+|...+.+++|++++ .+++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 998765443 345889999999999876 7889999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-------CCC
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DKM 549 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~ 549 (660)
|+.|++||+++++.. . ...++ ..+.+++|+|++.+++++.|+.|++||++++..+..+.. ..|
T Consensus 236 Dg~i~iwd~~~~~~~-----~-~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 236 DGQAMLWDLNEGKHL-----Y-TLDGG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp TCEEEEEETTTTEEE-----E-EEECS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CCeEEEEEeccCcee-----e-eecCC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 999999999985433 3 22333 479999999999888888999999999998877666543 246
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
...|++++|+|||++|++|+.||.|+|||+.+|+
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8899999999999999999999999999999885
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=318.37 Aligned_cols=301 Identities=12% Similarity=0.100 Sum_probs=224.5
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
.+..+.+|.. |.++ .|+|+ +|++|+.|++|++||+.... ..... .+...+|...|.+++|+|+
T Consensus 6 ~~~~~~~h~~~v~~~-----------~~s~~--~las~~~D~~i~lw~~~~~~--~~~~~-~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 6 LIKSLKLYKEKIWSF-----------DFSQG--ILATGSTDRKIKLVSVKYDD--FTLID-VLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EEEEEECCSSCEEEE-----------EEETT--EEEEEESSSCEEEEECSSSC--CEEEE-EECTTCCCSCEEEEEECTT
T ss_pred cceeeccCCCceeee-----------ccCCC--EEEEEcCCCEEEEEEecCCC--eEEEE-EEecCCccCCEEEEEECCC
Confidence 3455667766 4444 78887 99999999999999997411 12222 2322238999999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~i 399 (660)
|++|++++.|++|++|++..... .......+..+ .+|...|.+++|+ +++|++|+ |++|++
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~--~~h~~~V~~v~~sp~g~~las~s~D~~v~i 133 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESAD--------------RTFEMDLLAII--EGHENEVKGVAWSNDGYYLATCSRDKSVWI 133 (330)
T ss_dssp SSEEEEEETTSCEEEEEC---------------------CCCEEEEEE--C----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcC--------------ccccceeEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence 99999999999999999854321 00011122211 2799999999999 88999999 999999
Q ss_pred EECCC----CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC--ceeeEeeccCCCeEEEEEeCC--CCE
Q 006126 400 FSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNV 470 (660)
Q Consensus 400 wd~~~----~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~--~~~ 470 (660)
||+.. .+++..+.+|...|.+++|+|++ .|++|+.|++|++||..++ +++..+.+|...|.+++|+|+ +.+
T Consensus 134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 99943 35678889999999999999999 9999999999999998776 678889999999999999998 778
Q ss_pred EEEEeCCCcEEEEEcCCCeeee---ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc--eeeee
Q 006126 471 LVSSGADAQLCVWDAVGWKKLC---SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQL 544 (660)
Q Consensus 471 l~s~s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~ 544 (660)
|++++.|++|++||++++.... ......+...|. ..|.+++|++++ +|++ +.|+.|++||..++. .....
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 9999999999999997632100 012221222366 689999999877 5555 799999999998774 23232
Q ss_pred cCCCCCC-CeEEEEEcc--CCCEEEEEecCCeEEEEECCC
Q 006126 545 VPDKMDL-PITYATYSC--DGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 545 ~~~~~~~-~v~~~~~s~--dg~~l~sg~~dg~I~iwd~~~ 581 (660)
. ..|.. .|.+++|+| ++++|++|+.||.|+|||+++
T Consensus 290 ~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 A-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp S-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred c-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2 23565 899999999 789999999999999999865
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-36 Score=340.16 Aligned_cols=341 Identities=11% Similarity=0.103 Sum_probs=276.8
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCC-eEEEEEec--CCCEEEEEECCCcEEEEeccCC
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~-V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~~ 343 (660)
+.|+|||++|++++ ++.|++||+.++..+ ..... +. +|... |.+++|+| +|++|++++.||.|++|++.++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~--~~--~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ--FT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE--EC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceE--Ee--cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 39999999999998 889999999852111 23333 43 38999 99999999 9999999999999999999644
Q ss_pred --------ceeee--e-------------------eccc----eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC-
Q 006126 344 --------KQSLE--E-------------------ENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS- 387 (660)
Q Consensus 344 --------~~~~~--~-------------------~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~- 387 (660)
..... . ...+ ..+.+|+ .+..+.... +|...|.+++|+ +.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSRPM 174 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSSSC
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCCCc
Confidence 11110 0 0111 4566777 334443332 799999999999 54
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCC---CeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceeeEe-e---ccCC
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GHQN 457 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~---~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~~~-~---~~~~ 457 (660)
.+++++ |+.|++||+.+++.+..+..|.. .|.+++|+|+ + .|++++.|+.|++||+.+++.+..+ . +|..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 799999 99999999999999999999999 9999999999 8 9999999999999999999999998 6 8999
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee----------------------------------------
Q 006126 458 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH---------------------------------------- 497 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------------------------------------- 497 (660)
.|.++.|+ +++++++++.|+.|++||+++++........
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence 99999999 9999999999999999999865432110000
Q ss_pred --------------------------------------------------------------------------------
Q 006126 498 -------------------------------------------------------------------------------- 497 (660)
Q Consensus 498 -------------------------------------------------------------------------------- 497 (660)
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~ 413 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 413 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEE
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEE
Confidence
Q ss_pred --------------------------------------------------------------------eeeeccCCCCCC
Q 006126 498 --------------------------------------------------------------------SFQTGLVPETTI 509 (660)
Q Consensus 498 --------------------------------------------------------------------~~~~~~~~~~~~ 509 (660)
....+|. ..
T Consensus 414 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~~ 490 (615)
T 1pgu_A 414 ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR---AK 490 (615)
T ss_dssp ECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---SC
T ss_pred EcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---Cc
Confidence 0011222 57
Q ss_pred eEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc----------CCCEEEEEecCCeEEEEE
Q 006126 510 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 510 v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----------dg~~l~sg~~dg~I~iwd 578 (660)
|.+++|+|++++|++ +.|+.|++||+.+++.+..+.. .|...|++++|+| ++++|++|+.||.|++||
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 899999999999999 5899999999999999887754 2689999999999 999999999999999999
Q ss_pred CCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 579 TSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 579 ~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+.++ +.+..+. +| ...+. +++|+| ++. |++++.||+|++|++..
T Consensus 570 ~~~~~~~~~~~~-------~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 570 VKRPMKIIKALN-------AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSCTTCCEEETT-------SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCceechhhh-------cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9997 6666654 44 44455 999999 788 99999999999999865
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.6e-38 Score=333.91 Aligned_cols=322 Identities=10% Similarity=0.029 Sum_probs=254.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|++|++++.||.+++||... ...... +.. | ..+....|+|+|++|++++.||.|++|++.++..
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~----~~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-- 131 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTII----RDGSKM-LKR--A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-- 131 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCS----EETTTT-SCS--C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE--
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecc----cceeeE-Eec--C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce--
Confidence 38999999999999999999999974 222211 211 3 4455567899999999999999999998765543
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
.... .+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 132 -------------------~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 132 -------------------REID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp -------------------EEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred -------------------eeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 1111 1699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeec---cCCCeEEE---------------------EEeCCCCEEEEEeCCCc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCL---------------------AYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~---~~~~v~~l---------------------~~sp~~~~l~s~s~dg~ 479 (660)
|++ .|++++.|+.|++||+++++.+..+.. |...|.++ +|+|+++++++++.||.
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 270 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV 270 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe
Confidence 999 999999999999999999999888875 34445554 45788999999999999
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCce-eeeecCCCCCCCeEEE
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYA 556 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~ 556 (660)
|++||+++++. +.....+|. ..|.+++|+|++. ++++ +.||.|++||+++++. +..+.. .|...|.++
T Consensus 271 i~i~d~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~ 341 (420)
T 3vl1_A 271 ITVHNVFSKEQ-----TIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNV 341 (420)
T ss_dssp EEEEETTTCCE-----EEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEE
T ss_pred EEEEECCCCce-----eEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEE
Confidence 99999998543 222444566 6899999999999 8888 5889999999998754 566654 357788888
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCCeeEEEee--cccccCCCCcCcccceEEEEEecCCCC---EEEEEeCCCeEEEEe
Q 006126 557 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN--LTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIE 631 (660)
Q Consensus 557 ~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~--~~~~~~~gh~~~~v~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~ 631 (660)
.+ +++++|++++.||.|++|++........+. .......+| ...+. +++|+| ++. .+++++.+|.+.+|+
T Consensus 342 ~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 342 YF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVS--QFCYVS-DDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCC--EEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred Ee-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-CcceE--EEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence 55 688899999999999999988742221111 000011133 34455 999999 788 778888899999999
Q ss_pred CCC
Q 006126 632 PLE 634 (660)
Q Consensus 632 ~~~ 634 (660)
+..
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 865
No 37
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=357.56 Aligned_cols=349 Identities=11% Similarity=0.064 Sum_probs=254.0
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
..+.|+| |++|++++.|++|++||+.+ ...+..+. |...|++++|+|++++|++|+.||.|++||+.+...
T Consensus 62 ~~l~fsp-g~~L~S~s~D~~v~lWd~~~---~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 62 KEMRFVK-GIYLVVINAKDTVYVLSLYS---QKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp EEEEEET-TTEEEEEETTCEEEEEETTT---CSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEcC-CCEEEEEECcCeEEEEECCC---CcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 3459999 88999999999999999985 22233332 678999999999999999999999999999987653
Q ss_pred e---------------------------------eeeeccceeEEEecCCCCceeeeccc----------------CCCC
Q 006126 346 S---------------------------------LEEENVNMESQLYQPSSKLVMTNDIA----------------ADPK 376 (660)
Q Consensus 346 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~h~ 376 (660)
. ......+..+ +||..++..+..+.. .+|.
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~ 211 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRT 211 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccC
Confidence 1 0123344567 999998886654321 1245
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE--Ec---C-------------CCCCeEEEEEc----CCC--eE
Q 006126 377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFILL----PQD--LF 429 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~--~~---~-------------~~~~v~~v~~s----p~~--~l 429 (660)
..|.+++|+ |.+|++++ ||.|++||+.+++++.. +. . +...|++++|+ |++ .+
T Consensus 212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 789999999 88999999 99999999999887654 21 1 23468899994 554 56
Q ss_pred EEEeCC--------------------------------------------------------------------------
Q 006126 430 AFGFDD-------------------------------------------------------------------------- 435 (660)
Q Consensus 430 ~s~~~d-------------------------------------------------------------------------- 435 (660)
++|+.|
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence 666443
Q ss_pred --CeEEEEeCCCCceeeE-----------------------------------------eeccCCCeEEEEEeCCCCEEE
Q 006126 436 --SSILVHCPCTKKTKAK-----------------------------------------LKGHQNRITCLAYSLSLNVLV 472 (660)
Q Consensus 436 --~~I~iwd~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~sp~~~~l~ 472 (660)
+.|++||+.+|..... +.+|...+.+++|+|++++|+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 3344444433321111 112223333445578899999
Q ss_pred EEeCCCcEEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc-------
Q 006126 473 SSGADAQLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN------- 539 (660)
Q Consensus 473 s~s~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~------- 539 (660)
+|+.|++|++||+.++.......+.. +..+|. ..|.+++|+|||++|++ +.|++|+|||+.+++
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~ 528 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENR 528 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCC---CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcccc
Confidence 99999999999999864211111110 012666 68999999999999999 599999999997652
Q ss_pred --------------------------------------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 540 --------------------------------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 540 --------------------------------------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
++..+. .|...|++++||||| +||+|+.|+.|+|||+++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 529 PESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp ---------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred CCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 244443 378999999999999 999999999999999998
Q ss_pred CeeEEEeecccccC-CCCcCcccceEEEEEe-----cCCC---CEEEEEeCCCeEEEEeC---CCCc
Q 006126 582 LELRCQINLTAYAQ-PGTISLELYPLVIAAH-----PLEP---NRIALGLTNGRVHVIEP---LESE 636 (660)
Q Consensus 582 ~~~~~~~~~~~~~~-~gh~~~~v~~~~v~~s-----p~d~---~~l~s~s~Dg~v~iw~~---~~~~ 636 (660)
+..+...... .. .|| ...|+ +++|+ | || .+|++|+.||+|++||+ .+|+
T Consensus 606 ~~~~~~~~~~--~~~~gh-~~~V~--sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 606 PAIIYMENIR--EISGAQ-SACVT--CIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp TEEEEEEEGG--GTCSSC-CCCEE--EEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred CeEEEEeehh--Hhcccc-ccceE--EEEEEEEecCC-CCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 8776432211 11 144 34444 99999 8 64 89999999999999999 5554
No 38
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-36 Score=311.65 Aligned_cols=296 Identities=16% Similarity=0.198 Sum_probs=243.1
Q ss_pred ecCCCCCCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE
Q 006126 304 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 382 (660)
Q Consensus 304 ~l~~~~h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 382 (660)
+|.+ |.+.|++++|+|+ +++|+|||.||+|+|||+...... .+.....+ .+|...|.++
T Consensus 33 tL~G--H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l--~~h~~~V~~~ 92 (340)
T 4aow_A 33 TLKG--HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRAL--RGHSHFVSDV 92 (340)
T ss_dssp EECC--CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEE--CCCSSCEEEE
T ss_pred EECC--ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEE--eCCCCCEEEE
Confidence 4654 9999999999997 689999999999999998765431 11112111 2799999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee-eEeeccCC
Q 006126 383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN 457 (660)
Q Consensus 383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~ 457 (660)
+|+ +.+|++++ |+.|++|+............+...+..+.+++++ .|++|+.|+.+++||+...... ....+|..
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 88999999 9999999999999998888899999999999999 9999999999999998765443 44567999
Q ss_pred CeEEEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEe
Q 006126 458 RITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 534 (660)
Q Consensus 458 ~v~~l~~sp~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd 534 (660)
.+.+++|++++ .++++++.|+.|++||+++++. +. ...+|. ..|.+++|+|++++|++ +.|+.|++||
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-----~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-----KT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-----ee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999998864 5788999999999999998543 23 455677 68999999999999999 5899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc--cCCCCcCcccceEEEEEec
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~--~~~gh~~~~v~~~~v~~sp 612 (660)
+++.+.+..+.. ...|.+++|+|++.++ +++.|+.|++||++++..+..+..... ...+| ... +++++|+|
T Consensus 244 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~--v~~l~~s~ 316 (340)
T 4aow_A 244 LNEGKHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQ--CTSLAWSA 316 (340)
T ss_dssp TTTTEEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCC--EEEEEECT
T ss_pred eccCceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCC--EEEEEECC
Confidence 999999888854 6789999999988655 556799999999999988877654321 12233 333 45999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 613 LEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++++|++|+.||+|+|||+.+|+
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999999875
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=358.24 Aligned_cols=346 Identities=12% Similarity=0.081 Sum_probs=255.6
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.++|+|||++||+|+.||+|+||+..+ .++.. .+ .|...|.+++|+| |++|++++.|++|++||+.+++..
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~-~~---~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVI-KL---EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTT----CEEEE-EC---SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEE-Ec---CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEE
Confidence 359999999999999999999999863 33322 22 2788999999999 889999999999999999876542
Q ss_pred ee--------------------eeccceeEEEecCCCCceeee---------cccCCCCCCeEEEEEe---CCEEEEEe-
Q 006126 347 LE--------------------EENVNMESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHLFSAS- 393 (660)
Q Consensus 347 ~~--------------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~h~~~v~~v~~s---~~~l~s~~- 393 (660)
.. ....+..+++||..++.+... ....+|...|.+++|+ +..+++|+
T Consensus 93 ~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 93 TTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp EEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred EEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 11 234456789999988875311 1223799999999999 35788888
Q ss_pred CCcEEEEECCCCeEEEEEcCC------------------CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE--e
Q 006126 394 GGKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--L 452 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~------------------~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~--~ 452 (660)
||.| +||+.++++++.+..| ...|.+++|+|+| +|++|+.|+.|++||+++++++.. +
T Consensus 173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l 251 (902)
T 2oaj_A 173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV 251 (902)
T ss_dssp SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence 8999 9999999999888765 4679999999999 999999999999999999887653 2
Q ss_pred ---ec-------------cCCCeEEEEEe----CCC-CEEEEEeCC-----CcEEEEEc---------------------
Q 006126 453 ---KG-------------HQNRITCLAYS----LSL-NVLVSSGAD-----AQLCVWDA--------------------- 485 (660)
Q Consensus 453 ---~~-------------~~~~v~~l~~s----p~~-~~l~s~s~d-----g~i~vwd~--------------------- 485 (660)
.. |...|++++|+ |++ ..+++|+.| ..+.+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~ 331 (902)
T 2oaj_A 252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331 (902)
T ss_dssp SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence 11 34579999995 433 456666554 25666652
Q ss_pred --------------------------------------------------CCCeeeece-eeee----------------
Q 006126 486 --------------------------------------------------VGWKKLCSK-FLHS---------------- 498 (660)
Q Consensus 486 --------------------------------------------------~~~~~~~~~-~~~~---------------- 498 (660)
.++...... ....
T Consensus 332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~ 411 (902)
T 2oaj_A 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS 411 (902)
T ss_dssp SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence 221100000 0000
Q ss_pred ------------------eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCcee--eeec-------CCCCC
Q 006126 499 ------------------FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT--SQLV-------PDKMD 550 (660)
Q Consensus 499 ------------------~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~--~~~~-------~~~~~ 550 (660)
...+|. ..+.+++|+|++++|++ +.|++|++||+.++... ..+. ...|.
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~---~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGV---RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSB---CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred cCHHHHHHHHhcccCCCCcccCCc---CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence 011122 23444566789999999 59999999999877431 1111 11468
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCee---------------------------------------------E
Q 006126 551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL---------------------------------------------R 585 (660)
Q Consensus 551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~---------------------------------------------~ 585 (660)
..|.+++|+|||++||+|+.||+|+|||+.+++. +
T Consensus 489 ~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 568 (902)
T 2oaj_A 489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS 568 (902)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence 8999999999999999999999999999987631 2
Q ss_pred EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
..+ .+| ...|+ +++|+| || +||+|+.|++|+|||+.++..
T Consensus 569 ~~l-------~~h-~~~V~--svafSp-dG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 569 TAV-------HAN-KGKTS--AINNSN-IG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp EEE-------CCC-SCSEE--EEEECB-TS-EEEEEETTSEEEEEETTTTEE
T ss_pred EEE-------EcC-CCcEE--EEEecC-Cc-EEEEEeCCCcEEEEECCCCeE
Confidence 222 244 44555 999999 89 999999999999999987654
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.6e-36 Score=319.93 Aligned_cols=312 Identities=18% Similarity=0.225 Sum_probs=262.8
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.++++|+++++|+.||+|++||+.+ +.... .+. +|...|++++|+ ++++++|+.||.|++||+.+++.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~-~~~--~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--- 191 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVT----GKCLR-TLV--GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC--- 191 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTT----CCEEE-ECC--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE---
T ss_pred EEEEcCCEEEEEECCCcEEEEECCC----CcEEE-EEc--CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE---
Confidence 6778899999999999999999984 33332 244 499999999998 56999999999999999876643
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 427 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~ 427 (660)
+.... +|...|.++.|+++.+++++ ||.|++||+.+++.+..+.+|...|.+++| ++
T Consensus 192 ------------------~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 192 ------------------IHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp ------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred ------------------EEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 11111 69999999999988899999 999999999999999999999999999999 67
Q ss_pred -eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 428 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 428 -~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
.+++|+.|+.|++||+++++.+..+.+|...|.++.| ++.++++++.|+.|++||+++++. +. ...+|.
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~-~~~~~~-- 319 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----IH-TLTGHQ-- 319 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCC--
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----EE-EEcCCc--
Confidence 9999999999999999999999999999999999999 789999999999999999998653 23 344565
Q ss_pred CCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCee
Q 006126 507 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~ 584 (660)
..+.++.++ +.++++ +.||.|++||+++++.+..+... .|...|++++|+ ++++++|+.||.|++||+.+++.
T Consensus 320 -~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 320 -SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp -SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred -ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 577777764 668888 58999999999999998888653 268899999995 68999999999999999999998
Q ss_pred EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCe----EEEEeCCCC
Q 006126 585 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLES 635 (660)
Q Consensus 585 ~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~----v~iw~~~~~ 635 (660)
+..+.... ..+| ...++ +++|+| ++.++++|+.||+ |.|||+...
T Consensus 395 ~~~~~~~~--~~~~-~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 395 IRNLVTLE--SGGS-GGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECT--TGGG-TCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeeccc--cCCC-CceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 88774211 0122 44455 999999 8999999999998 999999753
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.3e-36 Score=304.45 Aligned_cols=275 Identities=12% Similarity=0.119 Sum_probs=232.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|++|++++.||.|++|+..+ +.+... +. +|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 29 ~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-- 99 (312)
T 4ery_A 29 VKFSPNGEWLASSSADKLIKIWGAYD----GKFEKT-IS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-- 99 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEeeCCCeEEEEeCCC----cccchh-hc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--
Confidence 39999999999999999999999974 333332 43 3899999999999999999999999999999876653
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
+.... +|...|.+++|+ +++|++++ |+.|++||+.+++.+..+..|...|.+++|+
T Consensus 100 -------------------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 100 -------------------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred -------------------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence 11111 699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
|++ .+++|+.|+.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||+++++.. . ...+
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~-~~~~ 232 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-----K-TYTG 232 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-----E-EECS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----E-EEEe
Confidence 999 99999999999999999998887764 46678999999999999999999999999999986532 2 2334
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEEC
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDT 579 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~ 579 (660)
|......+......+++.++++ +.|+.|++||+.+++.+..+.+ |...|.+++|+|+++++++++ .|+.|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4321112333334467888888 5899999999999999888865 689999999999999999987 6999999986
Q ss_pred C
Q 006126 580 S 580 (660)
Q Consensus 580 ~ 580 (660)
+
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-36 Score=368.33 Aligned_cols=343 Identities=13% Similarity=0.125 Sum_probs=287.7
Q ss_pred eEecC--CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 268 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~sp--dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
+.|+| ++.++++|+.||.|++||+.+ +.+... +. +|.+.|.+++|+|+|+++++++.||.|++||+.++..
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~~-~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRNT-MF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTS----SSEEEE-EC--CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCC----cchhhe-ec--CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 58888 556899999999999999984 443332 43 3899999999999999999999999999999977643
Q ss_pred eee---------------------------------eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126 346 SLE---------------------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 390 (660)
Q Consensus 346 ~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~ 390 (660)
... .......+.+|+..++........ +|...|.+++|+ +.+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEE
Confidence 211 111234568899888876654432 689999999999 88999
Q ss_pred EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC------------------------
Q 006126 391 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------------ 444 (660)
Q Consensus 391 s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~------------------------ 444 (660)
+++ ||.|++||+.++..+..+.+|...|.+++|+|++ .+++++.|+.|++||+.
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999 9999999999999999999999999999999999 99999999998888743
Q ss_pred -------------------------------------------------------CCceeeEeeccCCCeEEEEEeCCCC
Q 006126 445 -------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 445 -------------------------------------------------------~~~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
+++....+.+|...|.+++|+|+|+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence 2333445567889999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC
Q 006126 470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 549 (660)
Q Consensus 470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~ 549 (660)
++++++.||.|++||+.+++.. . ..+|. ..|.+++|+|++.+++.+.|+.|++||+.+++....+.. |
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~ 1084 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--H 1084 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--C
T ss_pred EEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--c
Confidence 9999999999999999996532 1 23555 689999999988777668999999999999999888865 6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 629 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i 629 (660)
...|.+++|+|+++++++++.||.|++||+.+++....+. +| ...+. +++|+| ++.+|++++.||+|++
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~~~~s~-dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-------GH-NGCVR--CSAFSL-DGILLATGDDNGEIRI 1153 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-------CC-SSCEE--EEEECS-SSSEEEEEETTSCCCE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec-------cC-CCcEE--EEEECC-CCCEEEEEeCCCEEEE
Confidence 8899999999999999999999999999999998776665 44 44454 999999 8999999999999999
Q ss_pred EeCCCCceeccC
Q 006126 630 IEPLESEVEWGK 641 (660)
Q Consensus 630 w~~~~~~~~w~~ 641 (660)
||+.+++.....
T Consensus 1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp EESSSSCCCCCC
T ss_pred EECCCCceEEEe
Confidence 999998875543
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.6e-36 Score=363.03 Aligned_cols=323 Identities=12% Similarity=0.154 Sum_probs=268.5
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.+.|+|||+++++|+.||+|++||..+ +.... .+. +|.+.|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~-~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~- 691 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAET----GEKLL-DIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL- 691 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT----CCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC----CCEEE-Eec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-
Confidence 359999999999999999999999985 33322 243 4999999999999999999999999999999876654
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 421 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v 421 (660)
+.... +|...|.+++|+ +.++++++ |+.|++||+.++++...+.+|...|.++
T Consensus 692 --------------------~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 692 --------------------VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp --------------------EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred --------------------EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 11111 699999999998 34788888 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe------------------------------------------------
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------------------------------ 452 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~------------------------------------------------ 452 (660)
+|+|++ .+++|+.||.|++||+.+++....+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999999 9999999999999998776543322
Q ss_pred -------eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126 453 -------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 524 (660)
Q Consensus 453 -------~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~- 524 (660)
.+|...|.+++|+|+++++++++.||.|++||+.++.. +. ...+|. ..|.+++|+|+|+++++
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----VA-DCRGHL---SWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEECTTSSEEEEE
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----ee-ecCCCc---cceEEEEECCCCCEEEEE
Confidence 16778899999999999999999999999999998543 33 455777 78999999999999999
Q ss_pred EecCcEEEEeCCCCcee-----------------------------eeecCC------CCCCCeEEEEEccCCCEEEEEe
Q 006126 525 IHEGQIDVYEAPTLNHT-----------------------------SQLVPD------KMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 525 ~~d~~i~iwd~~~~~~~-----------------------------~~~~~~------~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
+.|+.|++||+.+.... ...... .+...+.+++|+|+++++++|+
T Consensus 901 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE
T ss_pred eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc
Confidence 58999999996532100 000000 1256799999999999999999
Q ss_pred cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 570 KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 570 ~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
.||.|++||+.+++....+. +| ...+. +++|+| ++++|++++.||+|++|++.+++...
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~-------~h-~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGV-------GH-KKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECC-------CC-SSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred CCCCEEEEEcCCCceeeecc-------cC-CCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceEE
Confidence 99999999999998877765 44 44455 899999 89999999999999999999987653
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.9e-36 Score=341.14 Aligned_cols=293 Identities=15% Similarity=0.192 Sum_probs=240.2
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
+|.+.|++++|+|++ ++|++|+.|++|++|++...... .+.....+. +|...|.+++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~--~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLT--GHSHFVEDVVLSSD 441 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEE--CCSSCEEEEEECTT
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceec--CCCCcEEEEEECCC
Confidence 499999999999875 79999999999999998765320 111111111 799999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe---eccCCCeE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRIT 460 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~---~~~~~~v~ 460 (660)
+++|++|+ ||+|++||+.+++..+.+.+|...|.+++|+|++ .|++|+.|++|++||.......... .+|...|.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 88999999 9999999999999999999999999999999999 9999999999999998754333222 46889999
Q ss_pred EEEEeCCC--CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCC
Q 006126 461 CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 537 (660)
Q Consensus 461 ~l~~sp~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~ 537 (660)
+++|+|++ ..+++++.|++|++||+++++. .. ...+|. +.|.+++|+|++++|++ +.|+.|++||+++
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-----RS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-----EE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 99999986 6899999999999999998532 22 456777 79999999999999999 5899999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc---------CCCCcCcccceEEE
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLVI 608 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~---------~~gh~~~~v~~~~v 608 (660)
++.+..+.. ...|.+++|+|++.++++++ |+.|+|||+.+++.+..+..+... +..+....+++.++
T Consensus 593 ~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 593 GKKLYSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TEEEECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CceEEEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 998877743 67899999999999888775 566999999999988777532111 00111223456799
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 609 AAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+|+| ++.+|++|+.||+|+||++.
T Consensus 669 ~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEcC-CCCEEEEEcCCCeEEEEecc
Confidence 9999 89999999999999999985
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.6e-36 Score=315.31 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=229.2
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCC----------------CCCCCeEEEEEecCCCEEEEEEC
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN----------------SFGGRVVRLIYSHSGDFLVALTQ 331 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~----------------~h~~~V~~~~~spdg~~l~s~s~ 331 (660)
+.|+|||++||+|+ ++++++|++.+ +..... +..+ .+...|.+++|+|+|++|++|+.
T Consensus 70 v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 70 VKFSNDGEYLATGC-NKTTQVYRVSD----GSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp EEECTTSSEEEEEC-BSCEEEEETTT----CCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEc-CCcEEEEEecC----CCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 49999999999976 78999999975 322221 2210 12335999999999999999999
Q ss_pred CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEE
Q 006126 332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL 408 (660)
Q Consensus 332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~ 408 (660)
|+.|++||+.+++. +..+ .+|...|.+++|+ +.+|++++ |++|++||+.++++.
T Consensus 144 d~~i~iwd~~~~~~---------------------~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 144 DRLIRIWDIENRKI---------------------VMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp TSCEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCcE---------------------EEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE
Confidence 99999999876643 1111 1799999999999 88999999 999999999999988
Q ss_pred EEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe-------eccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 409 ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 409 ~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
..+. +...+.+++|+| ++ +|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|+|++|++++.|++
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 8775 456799999999 77 9999999999999999999888776 579999999999999999999999999
Q ss_pred EEEEEcCCCeeee-------ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 480 LCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 480 i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
|++||+++..... ..... ...+|. ..|.+++|+|++.+|++ +.|+.|++||+.+++++..+.+ |..
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~--h~~ 353 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--HRN 353 (393)
T ss_dssp EEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--CSS
T ss_pred EEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC--CCC
Confidence 9999998743211 11122 345777 68999999999999999 5899999999999999888865 689
Q ss_pred CeEEEEEcc------CCCEEEEEecCCeEEEEECCCC
Q 006126 552 PITYATYSC------DGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 552 ~v~~~~~s~------dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
.|.+++|++ ++++|++|+.||.|+||++...
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999986 6889999999999999998643
No 46
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=305.77 Aligned_cols=290 Identities=15% Similarity=0.184 Sum_probs=247.7
Q ss_pred eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126 300 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 379 (660)
Q Consensus 300 ~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 379 (660)
.....+.+ |.+.|.+++|+|+|++|++++.||.|++|++.+++. +..+. +|...|
T Consensus 23 ~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v 77 (369)
T 3zwl_B 23 MKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGTLD--GHTGTI 77 (369)
T ss_dssp EEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEEEC--CCSSCE
T ss_pred cccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhhhh--hcCCcE
Confidence 33344544 999999999999999999999999999999876653 11111 699999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCc---
Q 006126 380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK--- 447 (660)
Q Consensus 380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~--- 447 (660)
.+++|+ +++|++++ ||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+ +.|++||+.++.
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 999999 88999999 9999999999999999887 88899999999999 99999998 999999987653
Q ss_pred --------eeeEeeccCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 448 --------TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 448 --------~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
....+..|.. .+.+++|+|+++++++++.||.|++||+++.. ..+. ....|. ..|.+++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~ 228 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSP 228 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECT
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECC
Confidence 3344555666 99999999999999999999999999998831 2222 344565 6899999999
Q ss_pred CCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC--------------eEEEEECCCC
Q 006126 518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTL 582 (660)
Q Consensus 518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg--------------~I~iwd~~~~ 582 (660)
++++|++ +.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||..++
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9999999 589999999999999988885 478899999999999999999988 8999999999
Q ss_pred eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+.+..+. +| ...+. +++|+| ++++|++++.||.|+||++..+..
T Consensus 306 ~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 306 EEIGRVQ-------GH-FGPLN--TVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CEEEEEE-------CC-SSCEE--EEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred cchhhee-------cc-cCcEE--EEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 9888876 33 44444 999999 899999999999999999987654
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-35 Score=336.09 Aligned_cols=289 Identities=17% Similarity=0.216 Sum_probs=235.2
Q ss_pred cccCCCC-CCceeecCCCCceeeEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC
Q 006126 247 ASSGDDS-NDSSCFNDNNQSRESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 324 (660)
Q Consensus 247 ~~~g~~~-v~~~~~~~~~~~~~~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~ 324 (660)
.+++|.. |.++ .|+|++ ++|++|+.|++|++|++.............+. +|...|.+++|+|+|+
T Consensus 377 ~l~~H~~~V~~v-----------~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 377 TMRAHTDMVTAI-----------ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEECCSSCEEEE-----------ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTTSS
T ss_pred hcccCCceeEEE-----------EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCCCC
Confidence 3566666 4444 788775 79999999999999999753222112222343 4999999999999999
Q ss_pred EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 006126 325 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 401 (660)
Q Consensus 325 ~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd 401 (660)
+|++|+.||+|+|||+.++.. ...+. +|...|.+++|+ +.+|++++ |++|++||
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVS---------------------TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCcc---------------------eeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999876643 11111 799999999999 88999999 99999999
Q ss_pred CCCCeEEEEE---cCCCCCeEEEEEcCCC---eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 402 LETFQTLATF---ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 402 ~~~~~~~~~~---~~~~~~v~~v~~sp~~---~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
.......... .+|...|.+++|+|++ .+++|+.|++|++||+++++....+.+|.+.|++++|+|++++|++++
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 8755443332 3688899999999986 799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCC-------
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK------- 548 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~------- 548 (660)
.||+|++||+++++.... ...+ ..|.+++|+|++.+++++.++.|++||+++++.+..+....
T Consensus 581 ~Dg~i~iwd~~~~~~~~~------~~~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYS------LEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp TTSBCEEEETTTTEEEEC------CBCS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------
T ss_pred CCCeEEEEECCCCceEEE------ecCC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccc
Confidence 999999999999654322 1222 57999999999999999888889999999998877664321
Q ss_pred ----------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 549 ----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 549 ----------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+...+++++|+|+|++|++|+.||.|+||++..
T Consensus 651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 112478999999999999999999999999853
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=324.80 Aligned_cols=320 Identities=10% Similarity=0.085 Sum_probs=246.0
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
.|+|+++.+++++ .|+..+ ..+..+ ..+ |.+.|.+++|+| +|++|++|+.||+|++||+.+....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g----~~~~~~-~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~- 99 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG----KLIATL-MEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG- 99 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC----CEEEEE-CTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-
T ss_pred hcCCccccccccc------cccccc----eEEeee-ccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-
Confidence 6788888888776 377642 233332 133 899999999999 9999999999999999998652110
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC---CCeEEEEEc---------
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA--------- 412 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~---~~~~~~~~~--------- 412 (660)
........ . +|...|.+++|+ +++|++++ ||.|++||+. +++....+.
T Consensus 100 --------------~~~~~~~~-~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 100 --------------EVYSSSLT-Y--DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp --------------CCCSCSEE-E--ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred --------------cccceeee-c--cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence 00000000 1 489999999999 78999999 9999999994 554444332
Q ss_pred -C--CCCCeEEEE--EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 413 -N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 413 -~--~~~~v~~v~--~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
. +...+.++. +++++ .+++|+.|+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.||.|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 1 456677777 56888 999999999999999999999999988 899999999999999999999999999999
Q ss_pred cCCCeeeeceeeeeeeeccCCCCCCeEEEEEe----cCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC-----------
Q 006126 485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH----PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----------- 548 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----------- 548 (660)
+++++. +.++..+|. ..|.+++|+ |++.+++++ .|+.|++||+++++++..+..+.
T Consensus 243 ~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 243 IRFNVL-----IRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TTTTEE-----EEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred cCCccE-----EEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 998543 332222444 579999665 467788885 88999999999998887776431
Q ss_pred -------------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc----------------------
Q 006126 549 -------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY---------------------- 593 (660)
Q Consensus 549 -------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~---------------------- 593 (660)
|...|++++|+ ++++|++|+.||.|++||+.+++....+..+..
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 55668999999 889999999999999999999987776653210
Q ss_pred --------cCCCCcCcccceEEEEEecC-CCCEEEEEeCCCeEEEEe
Q 006126 594 --------AQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 594 --------~~~gh~~~~v~~~~v~~sp~-d~~~l~s~s~Dg~v~iw~ 631 (660)
...+| ...|+ +++|++. ++.+|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~h-~~~I~--~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYH-HDIIN--SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------------CCCEE--EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCccccc-cccee--eEeeeccCCceEEEEEcCCceEEEeC
Confidence 01113 34444 8999993 277999999999999995
No 49
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-37 Score=332.01 Aligned_cols=326 Identities=10% Similarity=0.010 Sum_probs=225.4
Q ss_pred ecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC------CCEEEEEECCCcEEEEeccCC
Q 006126 270 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 270 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd------g~~l~s~s~dg~i~vw~~~~~ 343 (660)
.+|+++.+++++.|++|+|||+.+...... ....+.. |.+.|++++|+|+ +.+||+++.||+|++|++..+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE-EEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 357777888899999999999975221110 0111222 7889999999997 579999999999999999765
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCeEE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 420 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v~~ 420 (660)
..... ....... .... ..+|...|++++|+ +..|++|+ ||+|++||+.++. +...+.+|...|.+
T Consensus 246 ~~~~~--------~~~~~~~--p~~~--l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 246 ATDVH--------VFKMCEK--PSLT--LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SSSSS--------EEECCCS--CSEE--ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred ccccc--------cceeecC--ceEE--EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 42100 0000000 0001 11699999999999 77999999 9999999999764 45668899999999
Q ss_pred E--EEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC--CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeece
Q 006126 421 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 421 v--~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 494 (660)
+ +|+|++ +|++|+.|++|++||++++++...+.+|.. .|.+++|+|++..+++++.|++|++||++++.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----
Confidence 9 578886 789999999999999999888878877753 58899999999999999999999999999853
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC---CCCCCeEEEEEccCCCEEEEEec
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
.+. ...+|. +.|++++|+|+|++|++ +.|++|++||+..+ .+...... .+...+.+++|+|+|+.+. . .
T Consensus 389 ~~~-~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~-~ 461 (524)
T 2j04_B 389 AVH-PLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-I-D 461 (524)
T ss_dssp CCE-EEEECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-E-C
T ss_pred cce-eeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-c-c
Confidence 223 345787 79999999999999999 58999999998643 32222110 1122578999999998552 2 2
Q ss_pred CCeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCC
Q 006126 571 SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 571 dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~ 634 (660)
| .+++|+.. ++.....+. || ...|+ +|+|+| ++ .++|+|+.||+|+||++.-
T Consensus 462 ~-~~~~~~~~~~g~~~~~l~-------gh-~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 S-SYEVYPLTVNDVSKAKID-------AH-GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp C-CCCCCC--------------------C-CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred C-CceecccccCCcceeeec-------CC-CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 2 23344433 344455544 44 44566 999999 64 4999999999999999853
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.1e-34 Score=296.05 Aligned_cols=274 Identities=12% Similarity=0.065 Sum_probs=235.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+++++++++ ||.|++||+...........+.. .+|...|.+++|+|++++|++++.||.|++|++.+.....
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDC--LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEEC--SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccc--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce
Confidence 49999999999999 99999999986443334443322 2489999999999999999999999999999987664210
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s 424 (660)
.... .+|...|.+++|+ ++++++++ ||.|++||+.+++....+..|...+.+++|+
T Consensus 134 -------------------~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 134 -------------------KAEL--TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp -------------------EEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred -------------------eeec--ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 1101 1688899999999 78999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
|++ .|++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++.. ....|
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~ 264 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-------QLHLH 264 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-------EECCC
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-------EEcCC
Confidence 999 99999999999999999998887775 7889999999999999999999999999999985421 23455
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
. ..|.+++|+|+++++++ +.|+.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++
T Consensus 265 ~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 265 E---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp S---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred c---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 5 68999999999999999 58999999999999887554 35889999999999999999999999999996
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.4e-35 Score=308.62 Aligned_cols=285 Identities=16% Similarity=0.219 Sum_probs=230.6
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 309 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg-~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
+|...|.+++|+|+| ++|++|+.||.|++|++.+..... .....+|...|.+++|+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---------------------FIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---------------------EECCCSTTCBEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---------------------eeecCCcCCceeEEEeCCC
Confidence 389999999999999 999999999999999987665411 11111699999999998
Q ss_pred -CCEEEEEe-CCcEEEEECCCCeEEEEEcCC---CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~---~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
+.+|++++ |+.|++||+.+ .....+..+ ...|.+++|+|++ .|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 47899999 99999999985 555555543 4789999999999 9999999999999999 578889999999999
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecCcEEEEeCC
Q 006126 460 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAP 536 (660)
Q Consensus 460 ~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~~i~iwd~~ 536 (660)
.+++|+|+++ ++++++.|+.|++||+++++... ..+. .. +|. ..|.+++|+| ++.+|++ +.|+.|++||++
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~-~~-~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-SYIA-EM-PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-CEEE-EE-ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-ceEE-Ee-cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 9999999999 99999999999999998743211 2222 22 465 6899999999 9999999 589999999999
Q ss_pred CCceeeeecCCC-----CC----------CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126 537 TLNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 601 (660)
Q Consensus 537 ~~~~~~~~~~~~-----~~----------~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 601 (660)
+++....+..+. |. ..+..++|+|+|++ +|+.||.|++||+.+++.+..+..+ +| ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~-----~~-~~ 353 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP-----NA-AG 353 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT-----TB-CS
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC-----CC-Cc
Confidence 888766665321 11 34445666777766 7778999999999999998887632 11 33
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
.+. +++|+| ++.+|++|+ ||.|+|||+.+
T Consensus 354 ~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IIS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 344 779999 899999997 99999999975
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-35 Score=311.05 Aligned_cols=295 Identities=9% Similarity=0.053 Sum_probs=239.9
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-C-
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G- 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~- 386 (660)
+|.+.|.+++|+| ++|++++.||.|++|++.+..... ......... +|...|.+++|+ .
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~--~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHF--VHKSGLHHVDVLQAI 74 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEE--CCTTCEEEEEEEEEE
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEe--cCCCcEEEEEEeccc
Confidence 4999999999999 799999999999999987765100 000111111 699999999999 6
Q ss_pred -------CEEEEEe-CCcEEEEECCCCeE-----EEEEcCC-----CCCeEEEEEc----CCC-e-EEEEeCCCeEEEEe
Q 006126 387 -------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVHC 442 (660)
Q Consensus 387 -------~~l~s~~-dg~I~iwd~~~~~~-----~~~~~~~-----~~~v~~v~~s----p~~-~-l~s~~~d~~I~iwd 442 (660)
.+|++++ ||.|++||+.+++. ...+..| ...|.+++|+ |++ . |++++.|+.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 6889998 99999999998887 8888888 5899999999 999 8 99999999999999
Q ss_pred CCC------Cceee-----Eee-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeec--
Q 006126 443 PCT------KKTKA-----KLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-- 502 (660)
Q Consensus 443 ~~~------~~~~~-----~~~-------~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-- 502 (660)
+.+ ++.+. .+. .|...|.+++|+|++ ++++++.||.|++||+++++.. . ....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-----~-~~~~~~ 227 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL-----Y-NFESQH 227 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE-----E-EEECCC
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee-----E-EEeccc
Confidence 998 77666 774 488999999999999 9999999999999999985432 2 2333
Q ss_pred -c---CCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCceeeeecCCC-----------CCCCeEEEEEccCCC
Q 006126 503 -L---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGK 563 (660)
Q Consensus 503 -~---~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~ 563 (660)
| . ..|.+++|+|++++|++ +.| +.|++||+++++.+..+.... |...|.+++|+|+++
T Consensus 228 ~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 304 (397)
T 1sq9_A 228 SMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304 (397)
T ss_dssp ---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred cccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence 5 4 68999999999999999 588 999999999999988886411 688999999999999
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEeecccccCCCC--------------cCcccceEEEEEecCCC----------CEEE
Q 006126 564 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRIA 619 (660)
Q Consensus 564 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh--------------~~~~v~~~~v~~sp~d~----------~~l~ 619 (660)
+|++|+.||.|++||+.+++.+..+...... .+| +...+ .+++|+| ++ ++|+
T Consensus 305 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~-~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 305 TLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGV--FDVKFLK-KGWRSGMGADLNESLC 380 (397)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCE--EEEEEEC-TTTSBSTTCTTSCEEE
T ss_pred EEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCce--eEEEecc-ccccccccccccceEE
Confidence 9999999999999999999998888721100 011 03334 4999999 77 7999
Q ss_pred EEeCCCeEEEEeCCCCc
Q 006126 620 LGLTNGRVHVIEPLESE 636 (660)
Q Consensus 620 s~s~Dg~v~iw~~~~~~ 636 (660)
+++.||.|++|++.+|+
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998763
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-34 Score=309.72 Aligned_cols=304 Identities=13% Similarity=0.168 Sum_probs=249.2
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.+.++++++++|+.||+|++||+.+ +.... .+. +|.+.|++++|+|++ ++++|+.||+|++||+.++..
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~-~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~--- 195 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSIN----KKFLL-QLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC--- 195 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTT----TEEEE-EEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---
T ss_pred EEEECCCEEEEEcCCCcEEEEECCC----CcEEE-EEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---
Confidence 5566789999999999999999974 33332 243 499999999999998 899999999999999876643
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEECCCCeE----------------
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT---------------- 407 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~~~~~~---------------- 407 (660)
+.... +|...|.+++|+ +.++++++ ||.|++||+.++..
T Consensus 196 ------------------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 196 ------------------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp ------------------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred ------------------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 11111 699999999998 47899999 99999999987652
Q ss_pred -------EEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCc
Q 006126 408 -------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 408 -------~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~ 479 (660)
...+.+|...+.++ ++++ .+++|+.|+.|++||+.+++.+..+.+|...|.++.|+|+++++++|+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 45677888888876 5677 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 558 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 558 (660)
|++||+++++. +. ...+|. ..|.+++|+ +.++++ +.||.|++||+.++....... +...+..++|
T Consensus 334 i~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~ 399 (464)
T 3v7d_B 334 IRIWDLENGEL-----MY-TLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF 399 (464)
T ss_dssp EEEEETTTTEE-----EE-EECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEE
T ss_pred EEEEECCCCcE-----EE-EEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEE
Confidence 99999998643 33 345676 689999998 567887 689999999999888766653 4677888999
Q ss_pred ccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEe
Q 006126 559 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 631 (660)
Q Consensus 559 s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~ 631 (660)
+++++++++|+ ||.|++||+.+++.+..+.. +| ...+. +++|++ ..++++++.||.+.+|-
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v~--~v~~~~--~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQIW--SVNFKG--KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEEE--EEEEET--TEEEEEEEETTEEEEEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcEE--EEEecC--CEEEEEEEeCCeEEEEE
Confidence 99999999998 89999999999998875332 22 44444 899975 45666777788766654
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=307.81 Aligned_cols=325 Identities=10% Similarity=0.067 Sum_probs=225.5
Q ss_pred eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeec------CCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEe
Q 006126 268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLL------PDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 339 (660)
Q Consensus 268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l------~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~ 339 (660)
+.|+| ++++|++++.||.|++||+.+............ ...+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 128 (408)
T 4a11_B 49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128 (408)
T ss_dssp EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence 39999 999999999999999999986433222221000 0024899999999999 778999999999999999
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEECCCCeEEEEEcC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFAN 413 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~l~s~~-dg~I~iwd~~~~~~~~~~~~ 413 (660)
+.++.. .... .+...+.++.+. +.++++++ +|.|++||+.+++.+..+..
T Consensus 129 ~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 129 TNTLQT---------------------ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp TTTTEE---------------------EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred CCCCcc---------------------ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 876653 1111 266778888888 33888888 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCc-eeeEe---------------eccCCCeEEEEEeCCCCEEEEEe
Q 006126 414 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 414 ~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
|...|.+++|+|++ .+++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 99999999999999 58999999999999998765 33333 56889999999999999999999
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 555 (660)
.||.|++||+++++........ ....... .........+.+.+++++.++.|++||+.+++.+..+.. |...|++
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~ 339 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGK-VCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDC 339 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCC-CCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEE
T ss_pred CCCeEEEEECCCCccceecccc-ccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEE
Confidence 9999999999986543221111 0011110 122223333445555557999999999999999988865 6899999
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
++|+|++++|++|+.||.|++||+.+++.+...... .. ...+.|.....+.+++.|+.+++|+...
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCcc
Confidence 999999999999999999999999999877654321 11 2344443455677888899999998753
No 55
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.1e-35 Score=306.10 Aligned_cols=298 Identities=10% Similarity=0.090 Sum_probs=239.1
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.++|.+++|+|+|++|++++.|+.|++|++.+++.. .+..+. +|...|.+++|+ ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELK--EHNGQVTGVDWAPDSN 65 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEE--CCSSCEEEEEEETTTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------eeeeec--CCCCcccEEEEeCCCC
Confidence 8999999999999999999999999999998766410 111111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce---eeE-eeccCCCe
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAK-LKGHQNRI 459 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~---~~~-~~~~~~~v 459 (660)
+|++++ ||.|++||+.+++....+ ..|...|.+++|+|++ .|++++.|+.|++||++.+.. ... ..+|...|
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 999999 999999999988765544 5788999999999999 999999999999999988763 333 35689999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-------------eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 525 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~ 525 (660)
.+++|+|+++++++++.||.|++||++.... .....+. ...+|. ..|.+++|+|++++|++ +
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999999752110 0012233 334566 68999999999999999 5
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC--CeeEE--Eeec-----------
Q 006126 526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRC--QINL----------- 590 (660)
Q Consensus 526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~--~~~~~--~~~~----------- 590 (660)
.|+.|++||+++++++..+.. |...|.+++|+|+++++++| .|+.|++|++.+ ++... .+..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 899999999999999888865 57899999999999999888 899999999988 53211 1100
Q ss_pred -----------c--------cccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCCCcee
Q 006126 591 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 591 -----------~--------~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
. .....|| ...|. +++|+|.+| .+|+||+.||+|++|++.+++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 1111355 44455 999886577 99999999999999999876653
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.6e-36 Score=318.92 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=225.4
Q ss_pred CCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 310 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 310 h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
|...|++++|+| ++++||+|+.||.|+|||+....... .+ ...+|.+.|++++|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~------------------~~---~~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT------------------FI---KGIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE------------------EE---CCCSSSCCCCEEEECSSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee------------------EE---EccCCCCCEEEEEEeCCC
Confidence 788999999999 56789999999999999987654310 11 111799999999998
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
+++|++++ ||+|++||++++........ +...+.+++|+|++ +|++|+.||.|++||++ ++.+..+.+|...|.+
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 67999999 99999999987655443333 34467899999999 99999999999999986 5667788999999999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126 462 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~ 539 (660)
++|+|++. ++++++.|+.|++||+++.+... .+. ...+|. ..|.+++|+|+|.+|++ +.|+.|++||+.++.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 99999876 78899999999999998854322 111 234676 68999999999999999 599999999999988
Q ss_pred eeeeecCCCC----CCCeEEEEEccCCCEEEEEe------------cCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 540 HTSQLVPDKM----DLPITYATYSCDGKCIYVSC------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 540 ~~~~~~~~~~----~~~v~~~~~s~dg~~l~sg~------------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
....+..+.+ ...+....|+|++.++++++ .++.|++||..+++.+..+.. +| ...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~------~~-~~~v 402 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD------PE-SSGI 402 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC------SS-CCCC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC------CC-CCcE
Confidence 7776654321 12344567788877777664 235799999999998877652 23 4444
Q ss_pred ceEEE-EEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 604 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 604 ~~~~v-~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
. ++ +|+| +|.+||+|+ |++|+||++.+++.+
T Consensus 403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp C--CEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence 4 55 7999 899999876 789999999988653
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.5e-35 Score=303.34 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=219.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCC-------cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 383 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg-------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 383 (660)
.-||++++|+|||++|++||.+. .|++|++......... .. .........+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~----------~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QF----------HILSEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HE----------EEEEEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---ee----------eeeeEEEccCCCCceEEEE
Confidence 55899999999999999998643 5999998765431110 00 0000011126888899999
Q ss_pred EeCCEEEEEe------------CCcEEEEECCCCeE----EEEEc-----CCCCCeEEEEEcCCC-eEEE--EeCCCeEE
Q 006126 384 LRGSHLFSAS------------GGKISIFSLETFQT----LATFA-----NPPPIATYFILLPQD-LFAF--GFDDSSIL 439 (660)
Q Consensus 384 ~s~~~l~s~~------------dg~I~iwd~~~~~~----~~~~~-----~~~~~v~~v~~sp~~-~l~s--~~~d~~I~ 439 (660)
++++.+++|. |+.+++|++.+... ..... .+...+.+++|+||| ++++ ++.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 9877777763 56799999865432 11211 234568899999999 6654 44789999
Q ss_pred EEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126 440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 519 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 519 (660)
+||+.+++.+..+. |...|.+++|+|||+++++++ ++.+.+|+..++.... .....+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~----~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIA----RKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEE----EECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCccee----eeecCCCC---CCEEEEEEcCCC
Confidence 99999999988886 778899999999999999988 4566777777654322 11334565 689999999999
Q ss_pred cEEEE-EecC----cEEEEeCCCCcee--eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 006126 520 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 592 (660)
Q Consensus 520 ~~l~~-~~d~----~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 592 (660)
+++++ +.|+ .+++||+...... .......|...|++++|+|||++||+|+.|+.|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 99998 5565 5888998765432 1222234688999999999999999999999999999999998876532
Q ss_pred ccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 593 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 593 ~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
|| ...|+ +++|+| |+++|||||.|++|+||++...
T Consensus 310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 55 44455 999999 8999999999999999999644
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-34 Score=333.61 Aligned_cols=323 Identities=13% Similarity=0.160 Sum_probs=259.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|||++|++++.||.|+|||+.+ ...... +. +|..+|.+++|+|+|++|++++.||.|++|++.+++.
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-- 89 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYET---QVEVRS--IQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT---TEEEEE--EE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC---CceEEE--Ee--cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 49999999999999999999999974 222333 33 3899999999999999999999999999999876653
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 423 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~ 423 (660)
+.... +|...|++++|+ +.+|++++ ||.|++||+.++ .....+.+|...|.+++|
T Consensus 90 -------------------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred -------------------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 11111 699999999999 88999999 899999999987 777888899999999999
Q ss_pred cC-CC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-CCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee
Q 006126 424 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 424 sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 498 (660)
+| ++ .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+++++. +.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~- 222 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-----VA- 222 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-----EE-
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-----EE-
Confidence 99 77 99999999999999999888887777654 8999999999 999999999999999999998543 33
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCE-EEEEecCCeEEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKV 576 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-l~sg~~dg~I~i 576 (660)
...+|. ..|.+++|+|++.++++ +.||.|++||+.+++.+..+.. +...+.+++|+|+|.. +++++.++.+.+
T Consensus 223 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 345666 68999999999999999 5899999999999999888865 5789999999999873 244445777889
Q ss_pred EECCCCeeEEEeecccc-c-----------------------C-----------CCCcCcccceEEEEEecCCCCEEEEE
Q 006126 577 FDTSTLELRCQINLTAY-A-----------------------Q-----------PGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 577 wd~~~~~~~~~~~~~~~-~-----------------------~-----------~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
|++..+.....+.+... . . .++.. ..+.+++|+| +|++++++
T Consensus 298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sp-dg~~la~~ 374 (814)
T 3mkq_A 298 LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD--VFPQSLAHSP-NGRFVTVV 374 (814)
T ss_dssp EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS--SCCSEEEECT-TSSEEEEE
T ss_pred EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc--cCCceeEECC-CCCEEEEe
Confidence 99875443322221000 0 0 01111 1234889999 78888888
Q ss_pred eCCCeEEEEeCCCC
Q 006126 622 LTNGRVHVIEPLES 635 (660)
Q Consensus 622 s~Dg~v~iw~~~~~ 635 (660)
+ ||.+.+|++...
T Consensus 375 ~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 375 G-DGEYVIYTALAW 387 (814)
T ss_dssp E-TTEEEEEETTTT
T ss_pred c-CCEEEEEECccc
Confidence 7 888999987543
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-35 Score=309.23 Aligned_cols=296 Identities=11% Similarity=0.143 Sum_probs=239.6
Q ss_pred CCCCCeEEEEEecCCC-EEEEEECCCcEEEEec----cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126 309 SFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 383 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 383 (660)
.|.+.|.+++|+|+|+ +|++++.||.|++|++ .++..... ......+-.+..+.. ...+|...|.+++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWK---LTIIAELRHPFALSA----SSGKTTNQVTCLA 115 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEE---EEEEEEEECCCCCC----------CBCEEEEE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccc---ccccccccccccccc----cccCCCCceEEEE
Confidence 3789999999999999 9999999999999999 66552000 000000001100000 0013788999999
Q ss_pred Ee--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCC-
Q 006126 384 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR- 458 (660)
Q Consensus 384 ~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~- 458 (660)
|+ +++|++++ ||.|++|| .+++.+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..+...
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 99 88999999 99999999 6788899999999999999999999 9999999999999999999999988887776
Q ss_pred --------------eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 459 --------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 459 --------------v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
+.++.|+|++ .+++++.||.|++||+++++. +. ...+|. ..|.+++|+|++++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP-----TG-KLIGHH---GPISVLEFNDTNKLLLS 264 (425)
T ss_dssp -----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC-----SE-EECCCS---SCEEEEEEETTTTEEEE
T ss_pred cceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce-----ee-eeccCC---CceEEEEECCCCCEEEE
Confidence 9999999975 588899999999999998532 22 344566 68999999999999999
Q ss_pred -EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 525 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 525 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
+.|+.|++||+++++.+..+.. |...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+ ...+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~i 333 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--------GVPI 333 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--------TCCE
T ss_pred EcCCCEEEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--------CccE
Confidence 5899999999999988888854 68899999999999 9999999999999999999988887632 3344
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 604 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
. +++|+| ++++|++++.||.|++|++.+++
T Consensus 334 ~--~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 334 F--AGRISQ-DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp E--EEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred E--EEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence 4 999999 89999999999999999998876
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.8e-35 Score=305.25 Aligned_cols=290 Identities=14% Similarity=0.158 Sum_probs=234.3
Q ss_pred CCCCCeEEEEEecC----CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126 309 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 309 ~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
+|..+|.+++|+|+ ...+++++.++.|++|++.++..... +.......|...|.+++|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL------------------LQSYVDADADENFYTCAW 77 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE------------------EEEEECSCTTCCEEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe------------------eeeccccCCCCcEEEEEe
Confidence 49999999999984 45677777788999999886654111 110111147789999999
Q ss_pred e-C-----CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe---
Q 006126 385 R-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL--- 452 (660)
Q Consensus 385 s-~-----~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~--- 452 (660)
+ . .+|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++|+.|+.|++||+++++.+..+
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9 3 4788888 99999999999999999999999999999999 77 9999999999999999999998888
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee----------------------eeeeeccCCCCCCe
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL----------------------HSFQTGLVPETTIV 510 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------------~~~~~~~~~~~~~v 510 (660)
.+|...|.+++|+|++++|++++.||.|++||+++++....... .....+|. ..|
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v 234 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYV 234 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCC
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceE
Confidence 67999999999999999999999999999999998543211100 00122355 689
Q ss_pred EEEEEecCCcEEEE-EecCcEEEEeCCCCce--------------eeeecCCCCCCCeEEEEEccC--CCEEEEEecCCe
Q 006126 511 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGH 573 (660)
Q Consensus 511 ~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--g~~l~sg~~dg~ 573 (660)
.+++|+ +.++++ +.|+.|++||+.++.. +..+.. |...|.+++|+|+ +++|++|+.||.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 999999 668888 4899999999987654 444543 5788999999999 999999999999
Q ss_pred EEEEECCCCeeEE----EeecccccCCCCc-CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 574 VKVFDTSTLELRC----QINLTAYAQPGTI-SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 574 I~iwd~~~~~~~~----~~~~~~~~~~gh~-~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
|++||+.+++... .+. +|. ... +.+++|+| ++++|++++.||.|+|||+.
T Consensus 311 i~vwd~~~~~~~~~~~~~~~-------~~~~~~~--v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLT-------HHKCGAA--IRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCSSSGGGCEEEEEC-------CTTCCSC--EEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCCCCccccceEEc-------ccccCCc--eEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 9999999886432 333 221 334 44999999 89999999999999999985
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=304.86 Aligned_cols=284 Identities=14% Similarity=0.155 Sum_probs=229.7
Q ss_pred CCCCeEEEEEecCCCEEE-EEEC---CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe
Q 006126 310 FGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~-s~s~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 385 (660)
|...|.+++|+|++..++ +++. ||.|++|++.+++... ... . +|...|.+++|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-------------------~~~-~--~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-------------------LRE-I--EKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-------------------EEE-E--EESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-------------------eee-e--cccCcEEEEEEc
Confidence 899999999999997655 5554 8999999987665311 000 1 588999999999
Q ss_pred -C----CEEEEEe-CCcEEEEECCCCe-EEEEEcCCCCCeEEEEE------cCCC-eEEEEeCCCeEEEEeCCCCc-eee
Q 006126 386 -G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-TKA 450 (660)
Q Consensus 386 -~----~~l~s~~-dg~I~iwd~~~~~-~~~~~~~~~~~v~~v~~------sp~~-~l~s~~~d~~I~iwd~~~~~-~~~ 450 (660)
. .+|++++ ||.|++||+.+++ .+..+.+|...|.++.| +|++ .|++++.|+.|++||+++++ .+.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 4 7899999 9999999999988 88899999999999955 6788 99999999999999999887 677
Q ss_pred EeeccCC----CeEEEE----EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec---CC
Q 006126 451 KLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQ 519 (660)
Q Consensus 451 ~~~~~~~----~v~~l~----~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~ 519 (660)
.+..|.+ .+.++. |+|+++++++++.||.|++||+++++.. . ...|. ..|.+++|+| ++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-----W--ETNIK---NGVCSLEFDRKDISM 224 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-----E--EEECS---SCEEEEEESCSSSSC
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-----e--ecCCC---CceEEEEcCCCCCCC
Confidence 7766554 889998 6889999999999999999999996532 1 23444 6899999999 89
Q ss_pred cEEEE-EecCcEEEEeCCCCceeeeec---CCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCee----------
Q 006126 520 IHLLS-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL---------- 584 (660)
Q Consensus 520 ~~l~~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~---------- 584 (660)
.++++ +.|+.|++||+++++....+. ...|...|++++|+|+++ ++++|+.||.|++||+.++..
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 99998 589999999998877655543 113689999999999998 899999999999999986532
Q ss_pred ---------EEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEeCCCeEEEEeCCCCc
Q 006126 585 ---------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 636 (660)
Q Consensus 585 ---------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~Dg~v~iw~~~~~~ 636 (660)
+..+. +| ...+. +++|+| ++.+|+ +++.||.|+||++.+.+
T Consensus 305 ~~~~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 305 MGVAGSVSLLQNVT-------LS-TQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCEEEEEEEEE-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccccceeeccc-------cC-CCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 33333 33 44455 999999 788887 89999999999998754
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=297.48 Aligned_cols=278 Identities=12% Similarity=0.088 Sum_probs=235.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|++|++++.||.|++||+.+ +.... .+.. |...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 38 ~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~-~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 108 (369)
T 3zwl_B 38 VKYNKEGDLLFSCSKDSSASVWYSLN----GERLG-TLDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-- 108 (369)
T ss_dssp EEECTTSCEEEEEESSSCEEEEETTT----CCEEE-EECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCCC----chhhh-hhhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 39999999999999999999999974 33332 2433 899999999999999999999999999999876654
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-----CcEEEEECCCCe-----------EE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ-----------TL 408 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d-----g~I~iwd~~~~~-----------~~ 408 (660)
+... .+...|.+++|+ +.++++++ + +.|.+||+.++. ..
T Consensus 109 -------------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 109 -------------------VATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp -------------------EEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred -------------------EEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 1111 267789999999 88999888 7 999999987653 33
Q ss_pred EEEcCCCC--CeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 409 ATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 409 ~~~~~~~~--~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
..+..+.. .+.+++|+|++ .|++++.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 44455555 89999999999 999999999999999998 788889999999999999999999999999999999999
Q ss_pred cCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--------------cEEEEeCCCCceeeeecCCCC
Q 006126 485 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVPDKM 549 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--------------~i~iwd~~~~~~~~~~~~~~~ 549 (660)
+++++.... .. +. ..+.+++|+|++++++++ .++ .+++||..+++.+..+.. |
T Consensus 247 ~~~~~~~~~------~~-~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~ 314 (369)
T 3zwl_B 247 VSTLQVLKK------YE-TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--H 314 (369)
T ss_dssp TTTCCEEEE------EE-CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--C
T ss_pred CCCCceeee------ec-CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--c
Confidence 998654322 11 22 589999999999999994 565 799999999999988865 6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
...|.+++|+|++++|++++.||.|++|+++++.....+
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 899999999999999999999999999999887654443
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-34 Score=291.20 Aligned_cols=291 Identities=11% Similarity=0.073 Sum_probs=238.7
Q ss_pred CccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec
Q 006126 243 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 321 (660)
Q Consensus 243 ~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp 321 (660)
.....+.+|.. +..+ .| |++++|++++.||.|++||+.+ ...... +. .|...|.+++|+|
T Consensus 9 ~~~~~l~~h~~~v~~~-----------~~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~-~~--~~~~~v~~~~~~~ 69 (313)
T 3odt_A 9 QLSATLKGHDQDVRDV-----------VA-VDDSKVASVSRDGTVRLWSKDD----QWLGTV-VY--TGQGFLNSVCYDS 69 (313)
T ss_dssp EEEEEECCCSSCEEEE-----------EE-EETTEEEEEETTSEEEEEEESS----SEEEEE-EE--ECSSCEEEEEEET
T ss_pred HHHHHhhCCCCCcEEE-----------Ee-cCCCEEEEEEcCCcEEEEECCC----CEEEEE-ee--cCCccEEEEEECC
Confidence 34455666665 4443 77 9999999999999999999974 333322 22 2899999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 400 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iw 400 (660)
++++|++++.||.+++|++.... .+..+... .+|...|.+++|.++++++++ ||.|++|
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATS------------------GEDPLYTL--IGHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCT------------------TSCC-CEE--CCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEecCCCeEEEEEeeecC------------------CCCcccch--hhcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 99999999999999999875442 12222221 169999999999988999999 9999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCC
Q 006126 401 SLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD 477 (660)
Q Consensus 401 d~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d 477 (660)
| .++....+..|...+.++.|+| ++ .+++++.|+.|++|| .++....+.. |...+.+++|+|++. +++++.|
T Consensus 130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 9 7788888999999999999998 77 999999999999999 4567777777 999999999999998 9999999
Q ss_pred CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEE
Q 006126 478 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 557 (660)
Q Consensus 478 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 557 (660)
|.|++||+++++. +. ...+|. ..|.+++|+|++.+++++.|+.|++||+++++.+..+.. |...|.+++
T Consensus 205 g~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~ 273 (313)
T 3odt_A 205 GLIKLVDMHTGDV-----LR-TYEGHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVD 273 (313)
T ss_dssp SEEEEEETTTCCE-----EE-EEECCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEE
T ss_pred CeEEEEECCchhh-----hh-hhhcCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEE
Confidence 9999999998543 33 345666 689999999999644447999999999999999888865 578999999
Q ss_pred EccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
|+|+++ +++++.||.|++||+.+++......
T Consensus 274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999998 5678999999999999987665543
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.9e-34 Score=300.55 Aligned_cols=284 Identities=12% Similarity=0.135 Sum_probs=225.8
Q ss_pred eEecCCC-CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126 268 STSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~spdg-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
+.|+|++ ++|++|+.||.|++||+.+ ...... +...+|...|.+++|+| ++++|++++.|+.|++||+.+...
T Consensus 79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 79 LEWHPTHPTTVAVGSKGGDIILWDYDV----QNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp EEECSSCTTEEEEEEBTSCEEEEETTS----TTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred EEECCCCCCEEEEEcCCCeEEEEeCCC----ccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 3999999 9999999999999999985 222221 33235999999999999 789999999999999999875332
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
..+. ...+|...|.+++|+ +.+|++++ |+.|++||+ +++.+..+..|...|.+++
T Consensus 154 -----------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 154 -----------QVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp -----------EEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred -----------EEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 1111 111466889999999 88999999 999999999 5888899999999999999
Q ss_pred EcCCC--eEEEEeCCCeEEEEeCCC----CceeeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeecee
Q 006126 423 LLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~~I~iwd~~~----~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 495 (660)
|+|++ .+++|+.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++......
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99999 799999999999999997 5666666 6999999999999 99999999999999999999865432211
Q ss_pred eee-eeeccCC-------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 496 LHS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 496 ~~~-~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
... ....|.. +...+..++|+|++++ ..+.|+.|++||+.+++.+..+....|...+..++|+|++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 110 0011110 0023444666666666 224799999999999999999977555778888899999999999
Q ss_pred EecCCeEEEEECCC
Q 006126 568 SCKSGHVKVFDTST 581 (660)
Q Consensus 568 g~~dg~I~iwd~~~ 581 (660)
|+ ||.|+|||+++
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999875
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=313.33 Aligned_cols=291 Identities=15% Similarity=0.208 Sum_probs=238.2
Q ss_pred CCCeEEEEEecCCC-EEEEE----------ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126 311 GGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 379 (660)
Q Consensus 311 ~~~V~~~~~spdg~-~l~s~----------s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 379 (660)
...|.+++|+|+|+ +|+++ +.|+.|++|++.++... ..+... .|...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------~~~~~~---~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------KPIASL---QVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------SCSCCC---CCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------cEEEEE---ecCCce
Confidence 45788999999997 89999 88999999998766420 011111 588999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCc---
Q 006126 380 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--- 447 (660)
Q Consensus 380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~--- 447 (660)
.+++|+ +.+|++++ ||.|++||+.+ .+....+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999 88999998 99999999987 4588888999999999999998 6 99999999999999999876
Q ss_pred ---eee---EeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC-
Q 006126 448 ---TKA---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 519 (660)
Q Consensus 448 ---~~~---~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~- 519 (660)
... .+.+|...|.+++|+|+ +.++++++.|+.|++||+++++............+|. ..|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKNS 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSCT
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCCC
Confidence 332 34679999999999998 7899999999999999999965433222211111224 689999999997
Q ss_pred cEEEE-EecC---cEEEEeCCCC-ceeeeecCCCCCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccc
Q 006126 520 IHLLS-IHEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 593 (660)
Q Consensus 520 ~~l~~-~~d~---~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~ 593 (660)
.++++ +.|+ .|++||++++ .++..+.. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--- 303 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--- 303 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC---
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC---
Confidence 57777 4777 9999999986 55555541 3689999999999 999999999999999999999998888773
Q ss_pred cCCCCcCcccceEEEEEecCCC-CEEEEEeCCCeEEEEeCCCCce
Q 006126 594 AQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp~d~-~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
| ...+. +++|+| ++ .+|++++.||.|+||++.+++.
T Consensus 304 ----~-~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 304 ----R-GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ----S-SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ----C-CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 3 44455 899999 66 8999999999999999988764
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-34 Score=300.50 Aligned_cols=279 Identities=10% Similarity=0.053 Sum_probs=230.7
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+.|+|||++|++++.|+.|++||..+ ... ....+. +|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELK--EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEET----TEEEEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC----CcEEeeeeec--CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 49999999999999999999999984 321 111243 38999999999999999999999999999998666421
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeE---EEEE-cCCCCCeE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LATF-ANPPPIAT 419 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~---~~~~-~~~~~~v~ 419 (660)
. .....+|...|.+++|+ +++|++++ |+.|++||+..+.. ...+ ..|...|.
T Consensus 88 ~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 88 P---------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp E---------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred e---------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 1 01111588999999999 88999999 99999999988762 3333 57889999
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEeC------------------CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 420 YFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d~~I~iwd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
+++|+|++ .|++++.|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 99999999 9999999999999995 4678888898999999999999999999999999999
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCC--Cce--e---------------
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNH--T--------------- 541 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~--~~~--~--------------- 541 (660)
++||+++++. +. ....|. ..|.+++|+|++.+++++.|+.|++||+.+ ++. +
T Consensus 227 ~i~d~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 227 CLADADKKMA-----VA-TLASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp EEEEGGGTTE-----EE-EEECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred EEEECCCCce-----eE-EEccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 9999998543 33 334555 689999999999999999999999999987 421 0
Q ss_pred ---------------------eeecCCCCCCCeEEEEEc-cCC---CEEEEEecCCeEEEEECCCCe
Q 006126 542 ---------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 542 ---------------------~~~~~~~~~~~v~~~~~s-~dg---~~l~sg~~dg~I~iwd~~~~~ 583 (660)
..+. ..|...|++++|. ++| ++|++|+.||.|++||+.+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp HHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1121 2578999999976 677 999999999999999998754
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=286.00 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=234.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|.+++| |++++|++++.||.|++|++.+... ..... .|...|.+++|+ +
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVVY--TGQGFLNSVCYDSEK 71 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEEE--ECSSCEEEEEEETTT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEee--cCCccEEEEEECCCC
Confidence 39999999999 9999999999999999999866543 11111 588999999999 8
Q ss_pred CEEEEEe-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE
Q 006126 387 SHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 461 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~---~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~ 461 (660)
.+|++++ ||.|++|++... +....+..|...|.+++| ++ .+++++.|+.|++|| .++....+..|...+.+
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeE
Confidence 8999999 999999998654 667788899999999999 45 999999999999999 67888889999999999
Q ss_pred EEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126 462 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~ 539 (660)
+.|+| ++..+++++.||.|++||... ........|. ..+.+++|+|++. +++ +.|+.|++||+++++
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence 99998 999999999999999999433 2221222255 6899999999999 555 699999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
.+..+.. |...|.+++|+|++ .+++++.||.|++||+.+++....+..+ ...+. +++|+| ++. ++
T Consensus 217 ~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~~~i~--~~~~~~-~~~-~~ 281 (313)
T 3odt_A 217 VLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------AISIW--SVDCMS-NGD-II 281 (313)
T ss_dssp EEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--------SSCEE--EEEECT-TSC-EE
T ss_pred hhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--------CceEE--EEEEcc-CCC-EE
Confidence 9988865 68999999999999 5889999999999999999988888632 33444 999999 777 66
Q ss_pred EEeCCCeEEEEeCCCCcee
Q 006126 620 LGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 620 s~s~Dg~v~iw~~~~~~~~ 638 (660)
+++.||.|++|++.+++..
T Consensus 282 ~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 282 VGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEETTSCEEEEESCGGGCC
T ss_pred EEeCCCcEEEEeCCCCcee
Confidence 7899999999999887653
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-34 Score=301.08 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=230.1
Q ss_pred ecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeee
Q 006126 270 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 349 (660)
Q Consensus 270 ~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~ 349 (660)
+++++..+++++.||.|++||..+ +....... ..|...|.+++|+|+|++|++|+.||.|++|++.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---- 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADS----GSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---- 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT----CCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----
T ss_pred EeecCCCEEEEECCCeEEEeeCCC----CcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE----
Confidence 334456788999999999999985 44433221 12789999999999999999999999999999876643
Q ss_pred eccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCC
Q 006126 350 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD 427 (660)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~-~~~~~~~~~~~~~~v~~v~~sp~~ 427 (660)
+.... +|...|.+++|++++|++++ ||.|++||+. .+.....+.+|...|.+++|+|++
T Consensus 169 -----------------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 169 -----------------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp -----------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred -----------------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 11111 69999999999988999999 9999999998 567788889999999999999999
Q ss_pred -eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 428 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 428 -~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
.|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++.... .. +
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~------~~-~ 302 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT------VD-A 302 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE------EE-C
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE------Ee-C
Confidence 999999999999999999999999999999999999999764 555654 799999999998654322 22 2
Q ss_pred CCCCCCeEEEEEecCCcEEEE--E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 504 VPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
. ..|.+++|+|+++++++ + .|+.|++||+.++..........|...|.+++|+|+|++|++++.||.|++|++.
T Consensus 303 ~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 303 G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 2 57999999999999998 3 6899999999987766554434578999999999999999999999999999999
Q ss_pred CCeeEEEe
Q 006126 581 TLELRCQI 588 (660)
Q Consensus 581 ~~~~~~~~ 588 (660)
+++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 98876654
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.4e-35 Score=315.44 Aligned_cols=286 Identities=12% Similarity=0.136 Sum_probs=216.9
Q ss_pred eEecC-CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCce
Q 006126 268 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 268 ~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
++|+| ++++||+|+.||+|+|||+... ..... +...+|.+.|.+++|+| ++++|++++.||+|++||+++...
T Consensus 125 l~~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~--~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTF--IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp EEECSSCTTCEEEEETTSCEEEECSSCC---SCCEE--ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred EEEeCCCCCEEEEEeCCCEEEEEECCCC---CceeE--EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 49999 5679999999999999999752 22222 22345999999999998 789999999999999999876543
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
. ... ....+...+.+++|+ +.+|++|+ ||.|++||+. ++.+..+.+|...|.+++
T Consensus 200 ~-----------~~~----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 200 R-----------VFA----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp E-----------EEE----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEE
T ss_pred e-----------EEe----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeee
Confidence 1 110 111345567889999 88999999 9999999986 566777889999999999
Q ss_pred EcCCC--eEEEEeCCCeEEEEeCCCCceeeE---eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeee
Q 006126 423 LLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 497 (660)
|+|++ .+++|+.|+.|++||+++++.... ..+|...|++++|+|+|++|++++.||.|++||++++........+
T Consensus 258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~ 337 (435)
T 4e54_B 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPH 337 (435)
T ss_dssp ECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCC
T ss_pred ecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecc
Confidence 99998 788999999999999988765433 3569999999999999999999999999999999987543222111
Q ss_pred eeeeccCCCCCCeEEEEEecCCcEEEEE-------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEE-EEccCCC
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCDGK 563 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~dg~ 563 (660)
....... ..+....|+|++..++++ .++.|++||..+++.+..+.. .|...|.++ +|+|+|+
T Consensus 338 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~ 413 (435)
T 4e54_B 338 PHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGD 413 (435)
T ss_dssp CCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSS
T ss_pred ccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCC
Confidence 0000000 123345566666655553 235799999999999888765 367788887 6999999
Q ss_pred EEEEEecCCeEEEEECCCCeeE
Q 006126 564 CIYVSCKSGHVKVFDTSTLELR 585 (660)
Q Consensus 564 ~l~sg~~dg~I~iwd~~~~~~~ 585 (660)
+|++|+ |+.|+||++++++..
T Consensus 414 ~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 414 TLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CEEEEC-SSEEEECCCC-----
T ss_pred EEEEEc-CCcEEEEECCcCeee
Confidence 999886 889999999988753
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=311.12 Aligned_cols=291 Identities=13% Similarity=0.099 Sum_probs=220.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.++|.+++|+|+|++|++++.|+.|++|++.++.. ..+..+ .+|...|.+++|+ ++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~s~~~~ 68 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHARTF--SDHDKIVTCVDWAPKSN 68 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCCB--CCCSSCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEEE--ecCCceEEEEEEeCCCC
Confidence 678999999999999999999999999999876521 011111 1699999999999 78
Q ss_pred EEEEEe-CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc---eeeEeec-cCCC
Q 006126 388 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR 458 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~---~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~---~~~~~~~-~~~~ 458 (660)
+|++++ |+.|++||+.+++ ....+..|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 999999 9999999999877 677778999999999999999 99999999999999999887 4677877 9999
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeee-------------eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 524 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~- 524 (660)
|.+++|+|++++|++++.|+.|++||++..... ....+. .. +|. ..|.+++|+|++++|++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-EY-PSG---GWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-CC-CCS---SSEEEEEECTTSSCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-cc-cCC---ceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999643211 112333 22 666 78999999999999998
Q ss_pred EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe--eEEEee---------
Q 006126 525 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LRCQIN--------- 589 (660)
Q Consensus 525 ~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~--~~~~~~--------- 589 (660)
+.|+.|++||+.+++. +..+.. |...|.+++|+|+|++|++|+.|+.+ +|+..... ....+.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred eCCCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 5899999999999887 666654 68899999999999999999877766 66655221 000000
Q ss_pred -------------------------c---------ccccCCCCcCcccceEEEEEecCCCC---EEEEEeCCCeEEEEeC
Q 006126 590 -------------------------L---------TAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIEP 632 (660)
Q Consensus 590 -------------------------~---------~~~~~~gh~~~~v~~~~v~~sp~d~~---~l~s~s~Dg~v~iw~~ 632 (660)
. ......+| ...+. ++.+.+.++. .|+|||.||+|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~--~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIA--TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSC-SSCEE--EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccc-cceeE--EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 00011124 44444 8887763444 7999999999999985
No 71
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-34 Score=303.27 Aligned_cols=285 Identities=18% Similarity=0.201 Sum_probs=232.5
Q ss_pred CCCC--eEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 310 FGGR--VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 310 h~~~--V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
|... +.+++|+ +..+++++.||.|++|++.++... .... ..|...|.+++|+
T Consensus 90 ~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~---------------------~~~~-~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 90 IIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVS---------------------ALAE-TDESTYVASVKWSHD 145 (401)
T ss_dssp CCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEE---------------------EEEE-CCTTCCEEEEEECTT
T ss_pred CcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEe---------------------Eeee-cCCCCCEEEEEECCC
Confidence 5554 4445555 456889999999999998776541 1111 1488999999999
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCC-CCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~-~~~~~~~~~~~~~~v~~l~ 463 (660)
+.+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.|+.|++||++ .+..+..+.+|...|.+++
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 88999999 999999999999999999999999999999432 99999999999999998 5667888899999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCc
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN 539 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~ 539 (660)
|+|++++|++++.|+.|++||++++.. +. ...+|. ..|.+++|+|++..+++ + .|+.|++||+.+++
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIP-----KF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSE-----EE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCc-----cE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 999999999999999999999998543 22 344565 68999999998765554 4 48999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEE--ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg--~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.+..+. +...|.+++|+|++++++++ +.||.|++||+.+++........ +| ...+. +++|+| ++.+
T Consensus 296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s~-dg~~ 363 (401)
T 4aez_A 296 RVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALSP-DGRI 363 (401)
T ss_dssp EEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEECT-TSSE
T ss_pred EEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEECC-CCCE
Confidence 988884 46789999999999999994 48999999999998766654432 44 44455 999999 8999
Q ss_pred EEEEeCCCeEEEEeCCCCceecc
Q 006126 618 IALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 618 l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
|++++.||.|++|++.+++....
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEECTTSEEEEEECCC------
T ss_pred EEEEeCCCcEEEEECCCCccccc
Confidence 99999999999999999887544
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-34 Score=306.80 Aligned_cols=285 Identities=12% Similarity=0.064 Sum_probs=230.9
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
..+.+++|+|+|++|++++.||.+++|++.+... ... + ..| ..+....|+ +++|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---------------------~~~-~-~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---------------------SKM-L-KRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET---------------------TTT-S-CSC-CEEEEEEECSSSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce---------------------eeE-E-ecC-CceEEEEEecCCCEE
Confidence 3455799999999999999999999999765543 110 0 023 333344556 8899
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
++++ ||.|++||+.+++....+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999 9999999999999998889999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCC------------------CCCCeEEEEEecCCcEEEE-EecC
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLS-IHEG 528 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~l~~-~~d~ 528 (660)
+++|++++.|+.|++||+++++........ ..+.. ....+.+++|+|+++++++ +.||
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRK---ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBT---TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecC---CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 999999999999999999987644322111 11110 0034455556789999999 5899
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceE
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 606 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~ 606 (660)
.|++||+++++.+..+.. .|...|.+++|+|+++ +|++|+.||.|++||+.+++. +..+. +|+...+.
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~v~-- 339 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------INEGTPIN-- 339 (420)
T ss_dssp CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------ESTTSCEE--
T ss_pred eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------ccCCCCce--
Confidence 999999999988877754 4688999999999999 999999999999999998753 55555 33355454
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 607 VIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 607 ~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
++ +.| ++.+|++++.||+|++|++..+
T Consensus 340 ~~-~~~-~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 340 NV-YFA-AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EE-EEE-TTEEEEEETTTEEEEEEEECCT
T ss_pred EE-EeC-CCCEEEEecCCccEEEEeccCC
Confidence 66 455 5789999999999999998874
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-34 Score=299.35 Aligned_cols=283 Identities=11% Similarity=0.088 Sum_probs=228.5
Q ss_pred eEecCC----CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC----CCEEEEEECCCcEEEEe
Q 006126 268 STSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWK 339 (660)
Q Consensus 268 ~~~spd----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd----g~~l~s~s~dg~i~vw~ 339 (660)
+.|+|+ ...+++++.++.|++||.........+..... ..|...|.+++|+|+ |++|++|+.||.|++||
T Consensus 24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD--ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc--cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 388884 45677777778999999985332223332222 227789999999999 67999999999999998
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEE---c
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF---A 412 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~---~ 412 (660)
+.+++. +.... +|...|.+++|+ +.+|++++ ||.|++||+.+++....+ .
T Consensus 102 ~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 158 (366)
T 3k26_A 102 PITMQC---------------------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158 (366)
T ss_dssp TTTCCE---------------------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred chhceE---------------------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence 876543 11111 699999999998 67999999 999999999999999988 6
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec----------------------------cCCCeEEEE
Q 006126 413 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----------------------------HQNRITCLA 463 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~----------------------------~~~~v~~l~ 463 (660)
.|...|.+++|+|++ .|++++.|+.|++||+++++....+.. |...|.++.
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 899999999999999 999999999999999998765544433 999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCCeeee---------ceeeeeeeeccCCCCCCeEEEEEecC--CcEEEEE-ecCcEE
Q 006126 464 YSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQID 531 (660)
Q Consensus 464 ~sp~~~~l~s~s~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~-~d~~i~ 531 (660)
|+ ++++++++.|+.|++||++++.... ...+. ...+|. ..|.+++|+|+ +++|+++ .||.|+
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 98 7799999999999999998854310 01222 345566 68999999999 9999995 889999
Q ss_pred EEeCCCCcee----eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 532 VYEAPTLNHT----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 532 iwd~~~~~~~----~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+||+.+++.. ..+..+.|...|++++|+|++++|++|+.||.|++||+.+
T Consensus 313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999987644 3565544479999999999999999999999999999853
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-33 Score=299.21 Aligned_cols=280 Identities=17% Similarity=0.206 Sum_probs=230.7
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.++||++ +.||+|. |++|+|||..+ +.+... +..++|...|++++|+|+|++|++|+.||.|++||+.+++.
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~t----g~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~- 181 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 181 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCC----CCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence 4589976 4777665 99999999984 554432 33345889999999999999999999999999999877654
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEc
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILL 424 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~s 424 (660)
+.... +|...+.++++++..|++|+ |+.+++||... ...+..+.+|...+..+.|+
T Consensus 182 --------------------~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 182 --------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp --------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred --------------------EEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 11111 79999999999999999999 99999999876 45567788999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCc----eeeEeeccCCCeEEEEEeCCCC-EEEE--EeCCCcEEEEEcCCCeeeeceee
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLN-VLVS--SGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~-~l~s--~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
|++ .+++++.|+.|++||..+++ .+.....|...|.+++|+|++. .+++ |+.|++|++||+.++.....
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~--- 316 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--- 316 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE---
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee---
Confidence 999 99999999999999998765 3456677999999999999654 5554 45799999999999654322
Q ss_pred eeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126 497 HSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573 (660)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~ 573 (660)
...+ ..+.++.|+|++..++++ .|+.|++||+.+++++.++.+ |...|++++|+|||++|++|+.|++
T Consensus 317 ---~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~t 387 (420)
T 4gga_A 317 ---VDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADET 387 (420)
T ss_dssp ---EECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTE
T ss_pred ---eccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCe
Confidence 2233 479999999999999873 589999999999999999865 7899999999999999999999999
Q ss_pred EEEEECCCCeeEEEe
Q 006126 574 VKVFDTSTLELRCQI 588 (660)
Q Consensus 574 I~iwd~~~~~~~~~~ 588 (660)
|+|||+.........
T Consensus 388 vriWdv~~~~~~~~~ 402 (420)
T 4gga_A 388 LRLWRCFELDPARRR 402 (420)
T ss_dssp EEEECCSCSSCC---
T ss_pred EEEEECCCCCccchh
Confidence 999999876554443
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.9e-33 Score=294.50 Aligned_cols=284 Identities=14% Similarity=0.160 Sum_probs=235.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
.-.+..++||++ +.|++| .|++|+|||..+++. .......+|...|++++|+ |++
T Consensus 105 d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 105 DYYLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp CTTCBCEEECTT-SEEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSE
T ss_pred cccceeEEECCC-CEEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCE
Confidence 345778999986 466665 599999998776653 2211222688899999999 899
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeC
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp 466 (660)
|++|+ ||.|++||+.++++++.+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|
T Consensus 162 lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 99999 999999999999999999999999998887533 9999999999999998864 45678899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE-EE-E--ecCcEEEEeCCCCceee
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-I--HEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~-~--~d~~i~iwd~~~~~~~~ 542 (660)
+++++++++.|+.+++||..+++... ..+. ....|. ..|.+++|+|++..+ ++ + .|++|++||+.++++..
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred CCCeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 99999999999999999998865322 1222 344565 689999999976544 44 2 68999999999999988
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
.+.. ...+.++.|+|+++.+++++ .|+.|+|||+.+++++..+. || ...|. +++|+| ||.+|||
T Consensus 316 ~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH-~~~V~--~l~~sp-dg~~l~S 381 (420)
T 4gga_A 316 AVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVAS 381 (420)
T ss_dssp EEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEE
T ss_pred eecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEE
Confidence 8854 67899999999999998765 68999999999999998886 55 44455 999999 8999999
Q ss_pred EeCCCeEEEEeCCCCce
Q 006126 621 GLTNGRVHVIEPLESEV 637 (660)
Q Consensus 621 ~s~Dg~v~iw~~~~~~~ 637 (660)
|+.||+|+|||+.+.++
T Consensus 382 ~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 382 AAADETLRLWRCFELDP 398 (420)
T ss_dssp EETTTEEEEECCSCSSC
T ss_pred EecCCeEEEEECCCCCc
Confidence 99999999999977544
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=305.41 Aligned_cols=309 Identities=12% Similarity=0.081 Sum_probs=236.2
Q ss_pred CCCccccc-cCCCC-CCceeecCCCCceeeEecC-CCCEEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEE
Q 006126 241 EGRPLDAS-SGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVR 316 (660)
Q Consensus 241 ~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~~~sp-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~ 316 (660)
++..+..+ .+|.. |.++ .|+| ++++|++|+.||+|++||+.......... ...+ +|...|.+
T Consensus 51 ~g~~~~~~~~~h~~~V~~~-----------~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~ 116 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSS-----------AVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQ 116 (437)
T ss_dssp CCCEEEEECTTTTSCEEEE-----------EEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEE
T ss_pred cceEEeeeccCCCCceEEE-----------EECCCCCCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEE
Confidence 34555555 66654 4444 9999 99999999999999999997411111010 1111 28999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEecc---CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEE
Q 006126 317 LIYSHSGDFLVALTQTATHKLWKWQ---SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHL 389 (660)
Q Consensus 317 ~~~spdg~~l~s~s~dg~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l 389 (660)
++|+|++++|++++.||.|++||+. .++..............+++ .++...+.++.+. +.+|
T Consensus 117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN-----------FGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG-----------GSSCCCEEEEEEEECSSCEEE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC-----------cccccCceEEEEEEcCCCCEE
Confidence 9999999999999999999999985 33321110000000011110 0266778888855 7789
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee-ccCCCeEEEEE
Q 006126 390 FSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAY 464 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~-~~~~~v~~l~~ 464 (660)
++++ ||.|++||+.+++++..+.. |...|++++|+|++ .|++|+.||.|++||+++++++..+. .|...|.+++|
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 9999 99999999999999999987 88999999999999 99999999999999999999998886 68889999966
Q ss_pred eC----CCCEEEEEeCCCcEEEEEcCCCeeeeceeeee------------------eeec--cCCCCCCeEEEEEecCCc
Q 006126 465 SL----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS------------------FQTG--LVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 465 sp----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~--~~~~~~~v~~~~~sp~~~ 520 (660)
+| ++.+|++++.||.|++||+++++......-.. ...+ |. ..|.+++|+ +++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~ 341 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDK 341 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-Cce
Confidence 54 67899999999999999999876443221100 0011 44 579999999 778
Q ss_pred EEEEE-ecCcEEEEeCCCCceeeeecCC-----------------------------------CCCCCeEEEEEccC--C
Q 006126 521 HLLSI-HEGQIDVYEAPTLNHTSQLVPD-----------------------------------KMDLPITYATYSCD--G 562 (660)
Q Consensus 521 ~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~s~d--g 562 (660)
+|+++ .|+.|++||+.+++....+..+ .|...|++++|+++ +
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~ 421 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET 421 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc
Confidence 88885 8999999999998887776542 17889999999988 7
Q ss_pred CEEEEEecCCeEEEEE
Q 006126 563 KCIYVSCKSGHVKVFD 578 (660)
Q Consensus 563 ~~l~sg~~dg~I~iwd 578 (660)
.+|++|+.||.|+||+
T Consensus 422 ~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 422 PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTSCEEEEC
T ss_pred eEEEEEcCCceEEEeC
Confidence 8999999999999995
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=297.29 Aligned_cols=282 Identities=12% Similarity=0.120 Sum_probs=223.3
Q ss_pred eEecCCCCEE-EEEeC---CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC---CCEEEEEECCCcEEEEec
Q 006126 268 STSLPDADSA-VCAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKW 340 (660)
Q Consensus 268 ~~~spdg~~l-~s~~~---dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd---g~~l~s~s~dg~i~vw~~ 340 (660)
+.|+|++..+ ++++. ||.|++||+.+ +........ +|...|.+++|+|+ |++|++++.||.|++|++
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceeee--cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 4999999755 45655 89999999985 333322111 38999999999998 799999999999999998
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE------e--CCEEEEEe-CCcEEEEECCCCe-EEEE
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TLAT 410 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~------s--~~~l~s~~-dg~I~iwd~~~~~-~~~~ 410 (660)
.++.. .+... .+|...|.++.| + +++|++++ ||.|++||+.+++ ....
T Consensus 98 ~~~~~--------------------~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 98 EAPEM--------------------PVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp TSCSS--------------------CSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCc--------------------cEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 76641 11111 169999999965 4 77999999 9999999999887 6777
Q ss_pred EcCCCC----CeEEEE----EcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC---CCCEEEEEeCCC
Q 006126 411 FANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADA 478 (660)
Q Consensus 411 ~~~~~~----~v~~v~----~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~s~s~dg 478 (660)
+..+.. .+.+++ |+|++ .+++++.|+.|++||+++++.... ..|...|.+++|+| ++.++++++.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 765544 788888 67899 999999999999999999887544 55889999999999 999999999999
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCcEEEEeCCCCc-----------------
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN----------------- 539 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~~~----------------- 539 (660)
.|++||+++++........ ...+|. ..|.+++|+|+++ ++++ +.||.|++||++++.
T Consensus 235 ~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp EEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred eEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence 9999999885443322222 234676 7999999999998 6777 589999999997543
Q ss_pred --eeeeecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCCCee
Q 006126 540 --HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 540 --~~~~~~~~~~~~~v~~~~~s~dg~~l~-sg~~dg~I~iwd~~~~~~ 584 (660)
.+..+. .|...|++++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus 311 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 311 VSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 344444 3688999999999999998 899999999999987653
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-33 Score=298.25 Aligned_cols=282 Identities=12% Similarity=0.148 Sum_probs=231.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCc---ceeeeecCCCCCCCCeEEEEEecC----C---CEEEEEECCCcEEEE
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFLVALTQTATHKLW 338 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~l~~~~h~~~V~~~~~spd----g---~~l~s~s~dg~i~vw 338 (660)
.|+| ++|++++.||.|++||+....... .... +. +|...|.+++|+|+ | ++|++++.||.|++|
T Consensus 23 ~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw 96 (397)
T 1sq9_A 23 SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 96 (397)
T ss_dssp EECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred EecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--Ee--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence 8888 899999999999999998532100 1333 32 38999999999999 9 999999999999999
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCC-----CCCeEEEEEe------CCE-EEEEe-CCcEEEEECCC-
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-GGKISIFSLET- 404 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~s------~~~-l~s~~-dg~I~iwd~~~- 404 (660)
++.+..... ........ +| ...|.+++|+ +.+ |++++ ||.|++||+.+
T Consensus 97 ~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 97 RITREDETK----------------KVIFEKLD--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEECTTTC----------------CEEEEEEC--CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred EccCCcccc----------------cccceeec--ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 987654200 00011111 45 5889999998 678 99998 99999999998
Q ss_pred -----CeEEE-----EE-------cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec---c---CCCeEE
Q 006126 405 -----FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---H---QNRITC 461 (660)
Q Consensus 405 -----~~~~~-----~~-------~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~---~---~~~v~~ 461 (660)
++.+. .+ ..|...|.+++|+|++.+++++.|+.|++||+++++.+..+.. | ...|.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 66665 66 4588899999999988888999999999999999999999998 9 999999
Q ss_pred EEEeCCCCEEEEEeCC---CcEEEEEcCCCeeeeceeeeeeeec-------------cCCCCCCeEEEEEecCCcEEEE-
Q 006126 462 LAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG-------------LVPETTIVNHIQFHPDQIHLLS- 524 (660)
Q Consensus 462 l~~sp~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~sp~~~~l~~- 524 (660)
++|+|++++|++++.| +.|++||+++++.. . ...+ |. ..|.+++|+|++++|++
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-----G-SLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-----E-EECBC--------CCBSBS---SCEEEEEECSSSSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCccc-----c-eeccCcccccccccccccC---CcEEEEEECCCCCEEEEE
Confidence 9999999999999999 99999999986433 2 2233 55 68999999999999999
Q ss_pred EecCcEEEEeCCCCceeeeecCC----CC---------------CCCeEEEEEccCC----------CEEEEEecCCeEE
Q 006126 525 IHEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG----------KCIYVSCKSGHVK 575 (660)
Q Consensus 525 ~~d~~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~~~~s~dg----------~~l~sg~~dg~I~ 575 (660)
+.|+.|++||+++++.+..+... .| ...|.+++|+|+| ++|++|+.||.|+
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 58999999999999998888711 24 8899999999998 7999999999999
Q ss_pred EEECCCCe
Q 006126 576 VFDTSTLE 583 (660)
Q Consensus 576 iwd~~~~~ 583 (660)
+|++.+|+
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99998764
No 79
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=299.24 Aligned_cols=324 Identities=15% Similarity=0.150 Sum_probs=245.0
Q ss_pred CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecC
Q 006126 283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 361 (660)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 361 (660)
++.+++|++.. ...... +. +|.+.|.+++|+| +|++|++++.||.|++|++.+.......... ...
T Consensus 22 ~~~~~v~~~~~----~~~~~~-~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~-- 88 (408)
T 4a11_B 22 ESTRRVLGLEL----NKDRDV-ER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVC-- 88 (408)
T ss_dssp HHHHHHHTEEE----CTTEEE-CC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEE--
T ss_pred cCcceeecccc----Ccceee-ee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccc--
Confidence 45577788763 333322 33 3999999999999 9999999999999999999876542210000 000
Q ss_pred CCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---C-eEEEEe
Q 006126 362 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D-LFAFGF 433 (660)
Q Consensus 362 ~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~---~-~l~s~~ 433 (660)
........+|...|.+++|+ +.+|++++ ||.|++||+.+++....+. +...+.++.|+|. + .+++++
T Consensus 89 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 89 ----SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp ----EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE
T ss_pred ----cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc
Confidence 00000112599999999998 56899999 9999999999999888876 6778899999884 4 899999
Q ss_pred CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeece----------eeeeeeec
Q 006126 434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSK----------FLHSFQTG 502 (660)
Q Consensus 434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~----------~~~~~~~~ 502 (660)
.|+.|++||+++++.+..+.+|...|.+++|+|+++ .+++++.||.|++||++++...... .......+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 999999999999999999999999999999999998 5899999999999999875411000 00111235
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC---CCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
|. ..|.+++|+|++++|++ +.|+.|++||+.+++....+..... ...+........+..+++++.|+.|++||
T Consensus 244 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 244 HN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 55 68999999999999999 5899999999998887655433211 11222222234456677778899999999
Q ss_pred CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
+.+++.+..+. +| ...+. +++|+| ++.+|++++.||.|++|++.+++..
T Consensus 321 ~~~~~~~~~~~-------~~-~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 321 VYSGEQITMLK-------GH-YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTTCCEEEEEC-------CC-SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred CcCCcceeeec-------cC-CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 99999998886 33 44455 999999 8999999999999999999988763
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-32 Score=296.24 Aligned_cols=278 Identities=13% Similarity=0.162 Sum_probs=235.6
Q ss_pred CCCCe-EEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC
Q 006126 310 FGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 387 (660)
Q Consensus 310 h~~~V-~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~ 387 (660)
|...| .++.| ++++|++|+.||.|++||+.+++. +..+. +|...|.+++|+ +.
T Consensus 120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------LLQLS--GHDGGVWALKYAHGG 174 (464)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------EEEEC--CCSSCEEEEEECSTT
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEe--CCCcCEEEEEEcCCC
Confidence 77775 55555 578999999999999999876653 11111 799999999999 66
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc--CCC-eEEEEeCCCeEEEEeCCCCce---------------
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKKT--------------- 448 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~s--p~~-~l~s~~~d~~I~iwd~~~~~~--------------- 448 (660)
+|++|+ ||+|++||+.+++.+..+.+|...|.+++|+ +++ .+++|+.|+.|++||+.++..
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 999999 9999999999999999999999999999998 577 999999999999999987653
Q ss_pred --------eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 449 --------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 449 --------~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
+..+.+|...|.++ +++++++++++.||.|++||+++++. +. ...+|. ..|.+++|+|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-----~~-~~~~~~---~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-----LY-ILSGHT---DRIYSTIYDHERK 323 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-----EE-EECCCS---SCEEEEEEETTTT
T ss_pred ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCEEEEEEcCCCC
Confidence 45677888888886 67789999999999999999998543 33 345676 6899999999999
Q ss_pred EEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 521 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 521 ~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++++ +.|+.|++||+++++++..+.. |...|.+++|+ ++++++|+.||.|++||+.+++.......
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 390 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--------- 390 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC---------
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC---------
Confidence 9999 5899999999999999988865 68999999997 68999999999999999999876655431
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
...+. .++|+| ++.++++++ ||.|++||+.+++....
T Consensus 391 ~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 391 TNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp TTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred CCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 33344 789999 899999998 89999999999987654
No 81
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.5e-33 Score=320.64 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=245.4
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|+|+|++|++++.||.|++||+.+ +.... .+. +|.+.|.+++|+|+|++|++++.||.|++|++.++..
T Consensus 61 ~~~s~~~~~l~~~~~dg~i~vw~~~~----~~~~~-~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-- 131 (814)
T 3mkq_A 61 GKFIARKNWIIVGSDDFRIRVFNYNT----GEKVV-DFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-- 131 (814)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTT----CCEEE-EEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCC----CcEEE-EEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce--
Confidence 49999999999999999999999985 33322 233 3899999999999999999999999999999876532
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFI 422 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~ 422 (660)
...... +|...|.+++|+ +..|++++ ||.|++||+.++.....+..+. ..+.+++
T Consensus 132 ------------------~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~ 191 (814)
T 3mkq_A 132 ------------------LEQTFE--GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191 (814)
T ss_dssp ------------------EEEEEE--CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE
T ss_pred ------------------EEEEEc--CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEE
Confidence 111111 689999999998 56899999 9999999999888877777554 8899999
Q ss_pred EcC--CC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 423 LLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 423 ~sp--~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
|+| ++ .+++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.++++++.||.|++||+.+++.. . .
T Consensus 192 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----~-~ 265 (814)
T 3mkq_A 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-----K-T 265 (814)
T ss_dssp ECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE-----E-E
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----E-E
Confidence 999 88 9999999999999999999999999999999999999999999999999999999999985432 2 2
Q ss_pred eeccCCCCCCeEEEEEecCCc--EEEEEecCcEEEEeCCCCceeeeecC-------------------------------
Q 006126 500 QTGLVPETTIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLNHTSQLVP------------------------------- 546 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~------------------------------- 546 (660)
...|. ..+.+++|+|++. +++++.++.+.+|++..+.....+..
T Consensus 266 ~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 266 LNVGL---ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp ECCSS---SSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred eecCC---CcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 33444 5899999999997 56668889999999765432221110
Q ss_pred ----------CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 547 ----------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 547 ----------~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
..+...+.+++|+|+|+++++++ ||.+.+|++........ ..+. +++|+| +++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~-------------~~i~--~~~~sp-dg~ 405 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF-------------GKCQ--DFVWGP-DSN 405 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE-------------EECS--EEEECT-TSS
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC-------------CceE--EEEEeC-CCC
Confidence 11344678999999999999998 89999999876543221 1122 566666 566
Q ss_pred EEEEEeCCCeEEEEeCC
Q 006126 617 RIALGLTNGRVHVIEPL 633 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~ 633 (660)
++++++.||+|++|+..
T Consensus 406 ~la~~~~~g~v~l~~~~ 422 (814)
T 3mkq_A 406 SYALIDETGQIKYYKNF 422 (814)
T ss_dssp CEEEECTTCCEEEEETT
T ss_pred eEEEEeCCCcEEEEECC
Confidence 66666666666666543
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4e-33 Score=282.17 Aligned_cols=247 Identities=14% Similarity=0.173 Sum_probs=203.4
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|.+++|+|+|++||+|+.|++|+||++..... ..+..+ .+|...|.+++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l--~gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 65 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEE--CCCSSCEEEEEECCGG
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEE--ccccCCeEEEEecCCC
Confidence 4999999999999999999999999999999864321 111111 1799999999996
Q ss_pred -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCce--eeEeeccC
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQ 456 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~--~~~~~~~~ 456 (660)
+++|++|+ |++|++||+.+++ .+..+..|...|.+++|+|+ + .|++|+.|+.|++||++++.. ...+.+|.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 67999999 9999999999874 56677889999999999998 7 999999999999999987632 45678899
Q ss_pred CCeEEEEEeCC-------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC---c
Q 006126 457 NRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---I 520 (660)
Q Consensus 457 ~~v~~l~~sp~-------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~ 520 (660)
..|.+++|+|+ +++|++|+.|++|++||++++.... .... ...+|. ..|.+++|+|++ .
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCce
Confidence 99999999997 5799999999999999998754211 1222 456787 799999999985 7
Q ss_pred EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 521 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 521 ~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+|++ +.|++|++||+++.. ....+....|...|.+++|+|+|++|++++.||.|+||+...
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 8888 589999999997643 112232234678999999999999999999999999999863
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=302.96 Aligned_cols=303 Identities=11% Similarity=0.093 Sum_probs=223.3
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCc--eeeecccCCCC-----------
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPK----------- 376 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~----------- 376 (660)
|.+.|.+++|+|+|++||+|+.||.|+||++.+...... ...+. +...+. +|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~~~~~--~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS------------HSRGEYNVYSTFQ--SHEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C------------CCCCCEEEEEEEE--CCCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc------------ccccceeEecccc--cccccccccccccc
Confidence 688999999999999999999999999999887652100 00000 111111 576
Q ss_pred -CCeEEEEEe--C--CEEEEEe-CCcEEEEECCCCeEE---------------------------------------EE-
Q 006126 377 -DSISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT- 410 (660)
Q Consensus 377 -~~v~~v~~s--~--~~l~s~~-dg~I~iwd~~~~~~~---------------------------------------~~- 410 (660)
..|.+++|+ + .+|++++ |+.|++||+.++... +.
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999 4 6899999 999999999765432 12
Q ss_pred EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC-Cceee-------EeeccCCCeEEEEEeCCC-CEEEEEeCCCcE
Q 006126 411 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKA-------KLKGHQNRITCLAYSLSL-NVLVSSGADAQL 480 (660)
Q Consensus 411 ~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~-~~~~~-------~~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i 480 (660)
..+|...|.+++|+|++ .|++| .|+.|++||+++ ++.+. .+.+|...|.+++|+|++ ++|++++.||.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 35799999999999999 99998 799999999984 44444 356799999999999998 999999999999
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCC---------CCCCeEEEEEecCCcEEEEEecCcEEEEeCCC-CceeeeecCCCCC
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMD 550 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~~~ 550 (660)
++||+++++.... .+. ...+|.. ....|.+++|+|+|++|+++.++.|++||+++ ++++..+..+...
T Consensus 252 ~iwd~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCDR-HSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSCT-TCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCccccc-eee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 9999998653110 122 2334430 00279999999999999996559999999997 8888887653210
Q ss_pred C-------------CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccccc-------------CCC-------
Q 006126 551 L-------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------QPG------- 597 (660)
Q Consensus 551 ~-------------~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~-------------~~g------- 597 (660)
. .+..++|+|++++|++|+.||.|++||+.+++.+.. ..+... ..+
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccccc
Confidence 1 134599999999999999999999999999887642 211000 000
Q ss_pred ---CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 598 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 598 ---h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
..+..-.+..++||| ++++||+++.++ +++|.-
T Consensus 409 ~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 001111245899999 899999998776 888864
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=279.58 Aligned_cols=280 Identities=14% Similarity=0.180 Sum_probs=229.3
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE
Q 006126 313 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 390 (660)
Q Consensus 313 ~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~ 390 (660)
...+|+||+++ .||+| .|++|+|||+.+++. +......+|...|.+++|+ +++|+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~---------------------~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCeEEEEEECCCCCEEE
Confidence 35789999986 56655 599999998776653 2222222688899999999 89999
Q ss_pred EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEEeCC
Q 006126 391 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 391 s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~ 467 (660)
+|+ ||+|++||+.+++++..+.+|...+.++.+ ++ .+++|+.++.+++|+...+ ..+..+.+|...+.++.++++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 999 999999999999999999999988876655 45 8999999999999998875 456778899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE---E-ecCcEEEEeCCCCceeee
Q 006126 468 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I-HEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 468 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~-~d~~i~iwd~~~~~~~~~ 543 (660)
++++++++.|+.|++||+++++...... . ....+. +.|.+++++|++..++. + .++.|++||.........
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPL-Q-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCS-E-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred CCEEEEEecCcceeEEECCCCcccccce-e-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 9999999999999999999865332211 1 233444 68999999998765543 2 678999999998887666
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEe--cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
.. +...+..++|+|+++.+++++ .|+.|+|||+.+++++..+. || ...|+ +++|+| ++++||||
T Consensus 237 ~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~ 302 (318)
T 4ggc_A 237 VD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASA 302 (318)
T ss_dssp EE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEE
T ss_pred cc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEE
Confidence 53 477899999999999888765 78999999999999998886 55 44555 999999 89999999
Q ss_pred eCCCeEEEEeCCCCc
Q 006126 622 LTNGRVHVIEPLESE 636 (660)
Q Consensus 622 s~Dg~v~iw~~~~~~ 636 (660)
|.||+|+|||+.+.+
T Consensus 303 s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 303 AADETLRLWRCFELD 317 (318)
T ss_dssp ETTTEEEEECCSCCC
T ss_pred ecCCeEEEEECCCCC
Confidence 999999999997654
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=279.28 Aligned_cols=274 Identities=16% Similarity=0.204 Sum_probs=225.5
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++||+++ .||+| .|++|+|||..+ +++... +..++|...|.+++|+|+|++|++|+.||+|++|++.+++.
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~t----g~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCC----CCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 5899987 66665 599999999984 444432 33345899999999999999999999999999999877654
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcC
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 425 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~-~~~~~~~~~~~~v~~v~~sp 425 (660)
+.... +|...+.++.+.+..+++++ ++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus 102 -------------------~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 102 -------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp -------------------EEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 11111 68888888877799999999 899999998875 45677889999999999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCce----eeEeeccCCCeEEEEEeCCCCEE---EEEeCCCcEEEEEcCCCeeeeceeee
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVL---VSSGADAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l---~s~s~dg~i~vwd~~~~~~~~~~~~~ 497 (660)
++ .+++++.|+.|++||+++++. ......+.+.|.++.++|++..+ ++++.+++|++||.+..... .
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence 99 999999999999999998754 34455688899999999976533 35677899999999885432 1
Q ss_pred eeeeccCCCCCCeEEEEEecCCcEEEE-E--ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
...+. ..+..+.|+|++..+++ + .|+.|++||+++++++.++.+ |...|++++|+|||++|++|+.||.|
T Consensus 236 --~~~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 236 --AVDAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp --EEECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred --cccce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 12222 57999999999999887 3 689999999999999999865 78999999999999999999999999
Q ss_pred EEEECCCCe
Q 006126 575 KVFDTSTLE 583 (660)
Q Consensus 575 ~iwd~~~~~ 583 (660)
+|||+....
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999997643
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-34 Score=300.28 Aligned_cols=280 Identities=10% Similarity=0.018 Sum_probs=214.3
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcc-eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+.|+|||++|++++.|+.|++||+.+ .. .....+. +|...|.+++|+|+|++|++++.||.|++||+.++...
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~----~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDG----NGWKHARTFS--DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEET----TEEEECCCBC--CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred EEECCCCCEEEEecCCCEEEEEEccC----CceEEEEEEe--cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 39999999999999999999999984 31 1112243 38999999999999999999999999999998765410
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe---EEEEEcC-CCCCeE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPPIAT 419 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~---~~~~~~~-~~~~v~ 419 (660)
.... ...+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+.. |...|.
T Consensus 91 ------------------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 91 ------------------KQTL--VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp ------------------CCEE--ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred ------------------eeee--EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 0011 111699999999999 88999999 9999999999887 4677777 999999
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEeCC------------------CCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 420 YFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d~~I~iwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
+++|+|++ +|++|+.|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.||.|
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 99999999 99999999999999985 35566667 899999999999999999999999999
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCce--eee---------------
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--TSQ--------------- 543 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~--~~~--------------- 543 (660)
++||+++++... ..+. ...+|. ..|.+++|+|++++|+++.++.+.+|+...... ...
T Consensus 230 ~iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T 3dwl_C 230 TIAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGN 304 (377)
T ss_dssp C-CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSS
T ss_pred EEEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccc
Confidence 999999865311 1133 455676 689999999999999998777777888752210 000
Q ss_pred -------------------ec--------------CCCCCCCeEEEEEccCC-C---EEEEEecCCeEEEEEC
Q 006126 544 -------------------LV--------------PDKMDLPITYATYSCDG-K---CIYVSCKSGHVKVFDT 579 (660)
Q Consensus 544 -------------------~~--------------~~~~~~~v~~~~~s~dg-~---~l~sg~~dg~I~iwd~ 579 (660)
+. ...|...|+++++.+.+ . .+++|+.||.|+|||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 305 TGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 01278899999976543 3 6999999999999985
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.2e-33 Score=282.02 Aligned_cols=248 Identities=11% Similarity=0.077 Sum_probs=204.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~--~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~ 445 (660)
+|...|++++|+ |++|++|+ |++|++||+.+ ++.+.++.+|...|.+++|+|+ + .|++|+.|++|++||+++
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 799999999999 89999999 99999999974 4678899999999999999864 7 999999999999999998
Q ss_pred Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---
Q 006126 446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 518 (660)
Q Consensus 446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 518 (660)
++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++++... ... ...+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~-~~~~h~---~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPI-IIDAHA---IGVNSASWAPATIE 159 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCE-EEECCS---SCEEEEEECCCC--
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eee-eeeccc---CccceEeecCCccc
Confidence 74 56677889999999999997 899999999999999999875321 112 456777 68999999997
Q ss_pred ----------CcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEECC
Q 006126 519 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 519 ----------~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~ 580 (660)
+++|++ +.|+.|++||++++. ....+. .|...|.+++|+|++ .+|++|+.|+.|+|||+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 468888 589999999998766 445554 478999999999985 899999999999999998
Q ss_pred CCee--E-EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceecc
Q 006126 581 TLEL--R-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 581 ~~~~--~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~ 640 (660)
++.. . ..+. ..+| ...++ +++|+| ++++||+++.||+|+||+.... +.|.
T Consensus 238 ~~~~~~~~~~~~-----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 238 NEQGPWKKTLLK-----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp STTSCCEEEESS-----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred CCCCccceeeee-----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence 7531 1 1211 1133 33444 999999 8999999999999999998643 3454
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-33 Score=292.74 Aligned_cols=289 Identities=11% Similarity=0.061 Sum_probs=215.9
Q ss_pred eEecCCCCEEEEEeCCC-------cEEEEeccCcCCCc-----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----
Q 006126 268 STSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---- 331 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg-------~i~iwd~~~~~~~~-----~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~---- 331 (660)
++|+|||++|++|+.+. .|++|++....... ....+.|.. |.+.|.+++++ ++.+++|..
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~--~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED--NDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT--TSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC--CCCceEEEEeC--CCEEEEEECCCcc
Confidence 39999999999998653 59999987532221 112234543 78888887664 567777654
Q ss_pred -------CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEE
Q 006126 332 -------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISI 399 (660)
Q Consensus 332 -------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~i 399 (660)
|+.+++|++........ .+.. ........+...+.+++|+ |+++++++ |++|++
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLE---------FLTS-----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEE---------EEEE-----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEecCCCcEEEEEecCCCceEE---------Eeee-----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 55667776654432111 1110 0001111456779999999 78776544 799999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEeC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGA 476 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s~ 476 (660)
||+.+++++..+. |...|.+++|+||| ++++++.+ .+.+|+..+++.+. ...+|...|.+++|+|+++++++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999998886 66789999999999 88888855 55666666666553 34568889999999999999999998
Q ss_pred CC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 477 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 477 dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
|+ .+++||+..+..... ... ...+|. ..|++++|+|||++|++ +.|++|+|||+++++++.++.. .|..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~ 313 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVL-RSK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF 313 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEE-EEE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred CCcceeEEeecccccceecce-eee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence 87 688899887543211 112 345666 68999999999999999 5899999999999999888743 4799
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
.|++++|+|||++|++|+.|++|+|||+...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999653
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.1e-33 Score=285.21 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=230.8
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+|.+.|.+++|+|++++|++++.||.|++|++........ ... .. +|...|.+++|+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------~~~-~~--~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------LLQ-SL--RYKHPLLCCNFIDNT 68 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------EEE-EE--ECSSCEEEEEEEESS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------cee-ee--ecCCceEEEEECCCC
Confidence 4999999999999999999999999999999876642000 111 11 588999999999 8
Q ss_pred C-EEEEEe-CCcEEEEEC-CCCeEEEEEcC--CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC---------CceeeE
Q 006126 387 S-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAK 451 (660)
Q Consensus 387 ~-~l~s~~-dg~I~iwd~-~~~~~~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~---------~~~~~~ 451 (660)
. +|++++ ||.|++||+ .+++. ..+.. |...|.+++|+| + .+++++.|+.|++||+++ ++++..
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 8 899999 999999999 87765 66778 999999999999 8 999999999999999988 777777
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecC
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG 528 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~ 528 (660)
+. |...|.+++|+|++ +++++.|+.|++||+++ +... .......|. ..+.+++|+| +++++++ +.||
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecCC
Confidence 76 88999999999987 99999999999999987 4321 111233444 6899999999 9999999 5899
Q ss_pred cEEEEeCCCC------ceeeeecCCC-------CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126 529 QIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 595 (660)
Q Consensus 529 ~i~iwd~~~~------~~~~~~~~~~-------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 595 (660)
.|++||+... +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------ 290 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------ 290 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh------
Confidence 9999999876 6666665531 23499999999999999999999999999999999888765
Q ss_pred CCCcCcccceEEEEEecCCCCEEEEEeCCCe-EEEEe
Q 006126 596 PGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 631 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~-v~iw~ 631 (660)
+|+...+. +++ | ++.+|++++.||+ .+.|.
T Consensus 291 -~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 -KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred -cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 44344455 777 8 8999999999998 55544
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=293.82 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=227.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 389 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l 389 (660)
|...|.+++| +|+++++|+.||.|++||..+++. ..... +|...|.+++|.+++|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~l~~~~~~l 186 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI 186 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEEEc--CCCCcEEEEEECCCEE
Confidence 6788998877 899999999999999999876543 11111 7999999999998999
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee---eEeeccCCCeEEEEEe
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS 465 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~---~~~~~~~~~v~~l~~s 465 (660)
++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++... ..+.+|...|.++.|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999 999999999999999999999999999999743 9999999999999999988765 677889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeee
Q 006126 466 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 544 (660)
Q Consensus 466 p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 544 (660)
+++++++|+.||.|++||+++++. +. ...+|. ..|.++.++ +.++++ +.|+.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~-----~~-~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEF-----VR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCE-----EE-EEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcE-----EE-EEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 688999999999999999998643 33 345666 689999885 678888 58999999999999999888
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe---------eEEEeecccccCCCCcCcccceEEEEEecCCC
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 615 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~---------~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~ 615 (660)
.. |...|.+++| ++++|++|+.||.|++||+.+++ .+..+. +| ...+. +++| ++
T Consensus 333 ~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~l~~---~~ 395 (435)
T 1p22_A 333 EG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQF---DE 395 (435)
T ss_dssp CC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEE---CS
T ss_pred eC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-------CC-CCCeE--EEEe---CC
Confidence 65 6889999998 78999999999999999997765 555554 44 44555 7888 46
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 616 NRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
.+|++++.||+|++||+.++.......++.
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 425 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPPRS 425 (435)
T ss_dssp SCEEECCSSSEEEEEC--------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCCCC
Confidence 789999999999999998877654444433
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.6e-31 Score=286.60 Aligned_cols=278 Identities=19% Similarity=0.216 Sum_probs=234.9
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 389 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l 389 (660)
|.+.|.. +++++|++|++|+.||.|++||+.+++. +..+. +|...|.+++|+++++
T Consensus 117 h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~l 172 (445)
T 2ovr_B 117 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNII 172 (445)
T ss_dssp STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTEE
T ss_pred cCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE---------------------EEEEc--CCCCCEEEEEecCCEE
Confidence 7877643 3566799999999999999999876653 11111 7999999999998899
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCC
Q 006126 390 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 468 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 468 (660)
++|+ ||.|++||+.+++.+..+.+|...|.++.|+++ .+++|+.|+.|++||+.+++.+..+.+|...|.++.| ++
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 9999 999999999999999999999999999999533 8999999999999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC
Q 006126 469 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 547 (660)
Q Consensus 469 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 547 (660)
+++++++.||.|++||+++++. +. ...+|. ..|.++.| ++.++++ +.|+.|++||+++++.+..+..
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~- 317 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETC-----LH-TLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG- 317 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEE-----EE-EECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-
T ss_pred CEEEEEcCCCEEEEEECCCCcE-----eE-EecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-
Confidence 8999999999999999998543 33 344666 68999999 7888888 5899999999999999888865
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE
Q 006126 548 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 627 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v 627 (660)
|...+.++.+ +++++++|+.||.|++||+.+++.+..+..+. +| ...+ .+++|+ ++++++|+.||.|
T Consensus 318 -~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~-~~~v--~~~~~~---~~~l~s~~~dg~v 384 (445)
T 2ovr_B 318 -HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----KH-QSAV--TCLQFN---KNFVITSSDDGTV 384 (445)
T ss_dssp -CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT----SC-SSCE--EEEEEC---SSEEEEEETTSEE
T ss_pred -CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC----CC-CCCE--EEEEEC---CCEEEEEeCCCeE
Confidence 5788887776 57799999999999999999999888876321 12 3334 488885 4799999999999
Q ss_pred EEEeCCCCceec
Q 006126 628 HVIEPLESEVEW 639 (660)
Q Consensus 628 ~iw~~~~~~~~w 639 (660)
++||+.+++...
T Consensus 385 ~iwd~~~~~~~~ 396 (445)
T 2ovr_B 385 KLWDLKTGEFIR 396 (445)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCceee
Confidence 999999987643
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.5e-33 Score=286.34 Aligned_cols=256 Identities=11% Similarity=0.108 Sum_probs=202.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeCCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~~~ 445 (660)
+|...|++++|+ +++|++|+ |++|++||+.++. .+..+.+|...|.+++|+| ++ .|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 799999999999 89999999 9999999998875 4677889999999999986 37 999999999999999998
Q ss_pred Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---
Q 006126 446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 518 (660)
Q Consensus 446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 518 (660)
++ ....+.+|...|.+++|+|+ +.+|++++.|++|++||++.+.. ........+|. ..|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 73 56678889999999999997 78999999999999999987421 11112345676 68999999997
Q ss_pred --------------CcEEEE-EecCcEEEEeCCCC---ceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEE
Q 006126 519 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 576 (660)
Q Consensus 519 --------------~~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~i 576 (660)
+++|++ +.|+.|++||++.. +++..+. .|...|.+++|+|++ ++|++|+.||.|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 367887 58999999999755 3455554 478999999999987 89999999999999
Q ss_pred EECCCCe----eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCccccc
Q 006126 577 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSRE 649 (660)
Q Consensus 577 wd~~~~~----~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~~~~ 649 (660)
|++.+.. ....+. +| ...++ +++|+| ++++||+++.||+|+||+.... ..|......+.++
T Consensus 243 w~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~~~~~ 307 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWVCISDVNKGQ 307 (316)
T ss_dssp EECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEEEEEECC---
T ss_pred EEccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEEeeeccCCC
Confidence 9997631 111222 23 34455 999999 8999999999999999998643 3454443333333
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=290.58 Aligned_cols=292 Identities=10% Similarity=0.059 Sum_probs=221.6
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++|||||+++|+++.|++|+ |... .. . +. +|...|++++|+|+| .++.+.+|+.+...
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~----~~--~--l~--gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKY----AK--D--IN--CNSKNLFHVKEFPLE-------FENKLDFELAQQNG--- 78 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECC----CS--C--CS--SBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred EEECCCCCEEEEEcCCceee--cccc----cc--e--ec--CCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence 39999999999999999999 6442 22 2 22 499999999999999 45665555432221
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC-----CeE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-----IAT 419 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~-----~v~ 419 (660)
... . .|...|.+++|+ |.+||+++ ||.|++||.+. ++..+. |.. .+.
T Consensus 79 ------------------~~~--~--~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 79 ------------------LLN--S--QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYH 133 (588)
T ss_dssp ------------------SST--T--SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEE
T ss_pred ------------------Eee--c--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEE
Confidence 111 1 468889999999 89999999 99999999654 666666 554 599
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEeCCCCce-------eeEe----eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 006126 420 YFILLPQD-LFAFGFDDSSILVHCPCTKKT-------KAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 487 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-------~~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~ 487 (660)
+++||||| .|++|+.||+|++||+.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+.+
T Consensus 134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 99999999 999999999999999998853 5666 5678899999999999 88899999999999988
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE--ccCCCEE
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKCI 565 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~dg~~l 565 (660)
+... ...+++..+|. ..|.+++|+ |..++++.+++|++||+.+++...... +|...|..++| +||+..+
T Consensus 212 ~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~L 282 (588)
T 2j04_A 212 SSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTIL 282 (588)
T ss_dssp SSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEE
T ss_pred Cccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEE
Confidence 5421 11222334666 689999999 688888778999999998777633332 37999999999 9999999
Q ss_pred EEEecCCeEEEEECCCCeeEEEeeccc------------ccCCCC----cCcccceEEEEEecCCCCEEEEEeC
Q 006126 566 YVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT----ISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 566 ~sg~~dg~I~iwd~~~~~~~~~~~~~~------------~~~~gh----~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
+++++||. ++|..+. +. +.+.. +...|. -.+...+.+++|+| ||+.+|+++.
T Consensus 283 a~a~edG~-klw~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 283 LMSNKTSY-KVLLEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EECSSCEE-EEEESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEcCCCC-EEEeecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence 99999999 9999862 11 21110 001010 01122245999999 8999999874
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-32 Score=280.09 Aligned_cols=243 Identities=15% Similarity=0.169 Sum_probs=198.4
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|.+++|+|+|++|++|+.|++|+|||+.++... .+..+ .+|...|.+++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~l--~gH~~~V~~v~~~~~~ 69 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIADL--RGHEGPVWQVAWAHPM 69 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEEE--ECCSSCEEEEEECCGG
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEEE--cCCCccEEEEEeCCCC
Confidence 49999999999999999999999999999998765320 11111 1799999999996
Q ss_pred -CCEEEEEe-CCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCce---eeEeecc
Q 006126 386 -GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH 455 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~--~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~---~~~~~~~ 455 (660)
+++|++|+ |++|++||+.++ .....+.+|...|.+++|+|+ + .|++|+.|+.|++||++++.. ...+.+|
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 67999999 999999999987 466778899999999999998 7 999999999999999987632 3556779
Q ss_pred CCCeEEEEEeCC-----------------CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126 456 QNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 518 (660)
Q Consensus 456 ~~~v~~l~~sp~-----------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 518 (660)
...|.++.|+|+ +++|++|+.|++|++||++.... ...+. .+.+|. ..|.+++|+|+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp~ 223 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAPS 223 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecCC
Confidence 999999999997 47899999999999999975321 01233 456787 68999999998
Q ss_pred C----cEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 519 Q----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 519 ~----~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
+ .+|++ +.|++|++||+.+.. ....+. .|...|.+++|+|+|++|++|+.||.|+||+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 6 78888 589999999997631 112232 368899999999999999999999999999976
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.8e-32 Score=286.02 Aligned_cols=289 Identities=12% Similarity=0.078 Sum_probs=230.8
Q ss_pred eEecCCCCEEE-EEeCCCcEEEEeccCcCCC-cceeeeecCCCCCCCCeEEEEEec-CCCEEEEEECCCcEEEEeccCCc
Q 006126 268 STSLPDADSAV-CAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNK 344 (660)
Q Consensus 268 ~~~spdg~~l~-s~~~dg~i~iwd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~ 344 (660)
+.++|+...++ +++.||.|+||++...... ..... + .+|.+.|.+++|+| ++++|++|+.||.|++|++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~--~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--V--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCC--B--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCce--E--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 47788776544 5788999999998641110 11111 3 34999999999999 99999999999999999988764
Q ss_pred eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C-CEEEEEe-CCcEEEEECCCCeEEEEE--cCCCCCe
Q 006126 345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIA 418 (660)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~-~~l~s~~-dg~I~iwd~~~~~~~~~~--~~~~~~v 418 (660)
.... ....+..+. +|...|.+++|+ + .+|++++ ||.|++||+.+++.+..+ ..|...|
T Consensus 116 ~~~~--------------~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 116 LVLP--------------LREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp CSSC--------------BCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred Cccc--------------cCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 2100 001111111 799999999999 4 6899999 999999999999999999 7899999
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe-eccCCC-eEEEEEeCCCCEEEEE---eCCCcEEEEEcCCCeeee
Q 006126 419 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~l~s~---s~dg~i~vwd~~~~~~~~ 492 (660)
.+++|+|++ .|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|+++++++| +.|+.|++||++++..
T Consensus 180 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-- 257 (402)
T 2aq5_A 180 YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-- 257 (402)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--
T ss_pred EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--
Confidence 999999999 9999999999999999999999888 678776 8999999999999999 7899999999988542
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
++......+. ..+.+++|+|+++++++ + .|+.|++||+.+++. +..+....|...|.+++|+|++.++++
T Consensus 258 --~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-- 330 (402)
T 2aq5_A 258 --PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-- 330 (402)
T ss_dssp --CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred --CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence 1221222344 57999999999999976 6 699999999998874 445444345789999999999998875
Q ss_pred cCCeEEEEECCCCeeE
Q 006126 570 KSGHVKVFDTSTLELR 585 (660)
Q Consensus 570 ~dg~I~iwd~~~~~~~ 585 (660)
.++.+++|++.+++..
T Consensus 331 ~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 331 KCEIARFYKLHERKCE 346 (402)
T ss_dssp GTEEEEEEEEETTEEE
T ss_pred cceeEEEEEcCCCcEE
Confidence 5679999999987654
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-31 Score=285.72 Aligned_cols=269 Identities=17% Similarity=0.254 Sum_probs=221.2
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.+++|++++++|+.||.|++||..+ +..... +. +|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~~--~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--- 205 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-LT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--- 205 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSS----CCEEEE-EC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-Ec--CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---
Confidence 5667999999999999999999974 443332 43 38999999999 789999999999999999876653
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEE---EEEcCCCCCeEEEEEc
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILL 424 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~---~~~~~~~~~v~~v~~s 424 (660)
+.... +|...|.+++|+++.+++|+ ||.|++||+.++... ..+.+|...|.+++|
T Consensus 206 ------------------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 206 ------------------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ------------------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred ------------------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 11111 68999999999988999999 999999999987655 667799999999999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 425 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
++ .+++|+.||.|++||+++++.+..+.+|...|.++.|+ +.++++|+.||.|++||+++++. +. ...+|
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~-----~~-~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-----LR-VLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----EE-EECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCE-----EE-EEeCC
Confidence 66 99999999999999999999999999999999999994 68999999999999999998543 33 34567
Q ss_pred CCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc---------eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126 504 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~ 573 (660)
. ..|.+++| ++.++++ +.||.|++||+.++. ++..+.. |...|.+++| ++++|++|+.||.
T Consensus 336 ~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 336 E---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp S---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECCSSSE
T ss_pred c---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--CCCCeEEEEe--CCCEEEEEeCCCE
Confidence 6 68999998 6888888 589999999997665 6666654 6889999999 7889999999999
Q ss_pred EEEEECCCCeeEEEe
Q 006126 574 VKVFDTSTLELRCQI 588 (660)
Q Consensus 574 I~iwd~~~~~~~~~~ 588 (660)
|++||+.++......
T Consensus 407 i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 407 ILIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEEC----------
T ss_pred EEEEECCCCCCcccC
Confidence 999999887655443
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=287.94 Aligned_cols=302 Identities=11% Similarity=0.080 Sum_probs=220.7
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCC-----Ccce-eeeecCCCCCC------------CCeEEEEEecCC--CEE
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--DFL 326 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~-----~~~~-~~~~l~~~~h~------------~~V~~~~~spdg--~~l 326 (660)
.+.|+|+|++||+|+.||.|+|||+..... .... ....+. +|. ..|.+++|+|++ .+|
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l 110 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQF 110 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE--CCCCEEEGGGTEEECCCCCEEEECCCCSSSEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc--cccccccccccccccCceEEEEEcCCCCcceE
Confidence 359999999999999999999999985321 0111 112243 377 889999999998 899
Q ss_pred EEEECCCcEEEEeccCCceeeeeec---c----------------ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 327 VALTQTATHKLWKWQSNKQSLEEEN---V----------------NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 327 ~s~s~dg~i~vw~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
++++.||.|++|++........... . .....-|.... .... .+..+|...|.+++|+
T Consensus 111 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 111 LLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEECTT
T ss_pred EEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEcCC
Confidence 9999999999999876543211000 0 00000000000 0011 1123799999999999
Q ss_pred CCEEEEEeCCcEEEEECCC-CeEEEE-------EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCce----eeE
Q 006126 386 GSHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAK 451 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~-~~~~~~-------~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~----~~~ 451 (660)
+++|++|.|+.|++||+.+ ++.... +.+|...|.+++|+|++ .|++|+.|+.|++||+++++. +..
T Consensus 189 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 189 YETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp SSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred CCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 8899988799999999984 444442 45889999999999997 999999999999999999887 788
Q ss_pred eeccCC------------CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCC----------
Q 006126 452 LKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT---------- 508 (660)
Q Consensus 452 ~~~~~~------------~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~---------- 508 (660)
+.+|.. .|.+++|+|+|++|++++. +.|++||+++ ++. +. ...+|.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~-~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-----VE-TYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----SC-CEESCGGGTTTHHHHHHTSG
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----cc-eeeccccccccccccccccc
Confidence 888876 8999999999999999998 9999999987 432 22 2333331000
Q ss_pred --CeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec------------------------------CCCCCCCeEE
Q 006126 509 --IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV------------------------------PDKMDLPITY 555 (660)
Q Consensus 509 --~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~v~~ 555 (660)
.+..++|+|++++|+++ .|+.|++||+.+++.+.... ...+...|..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 13349999999999985 89999999999887653110 0023567899
Q ss_pred EEEccCCCEEEEEecCCeEEEEECC
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
++|+|++++||+++.++ +++|..+
T Consensus 422 ~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 422 TAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EEECSSSSEEEEECSSC-EEEEECC
T ss_pred EEECCCCCEEEEEecce-eeeeccc
Confidence 99999999999998876 8888754
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.7e-31 Score=275.23 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=223.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCC-EEEEEECCCcEEEEec-cCCce
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSNKQ 345 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~-~~~~~ 345 (660)
+.|+|++++|++++.||.|++|++............. +|...|.+++|+|+++ +|++++.||.|++|++ .++..
T Consensus 17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL----RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE----ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee----ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 4999999999999999999999998522111133321 3899999999999999 9999999999999998 66542
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCC--CCCCeEEEEEe-CCEEEEEe-CCcEEEEECCC---------CeEEEEEc
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLATFA 412 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~---------~~~~~~~~ 412 (660)
..+ .+ |...|.+++|+ +++|++++ |+.|++||+.+ ++++..+.
T Consensus 93 -----------~~~-------------~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 93 -----------QAL-------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp -----------EEC-------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred -----------Eec-------------cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 111 15 99999999999 99999999 99999999987 76666665
Q ss_pred CCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-Cce--eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 006126 413 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW 488 (660)
Q Consensus 413 ~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~ 488 (660)
|...+.+++|+|++ +++++.|+.|++||+++ +.. ......|...|.+++|+| +++++++++.||.|++||++..
T Consensus 149 -~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 88899999999987 99999999999999998 543 334456888999999999 9999999999999999999874
Q ss_pred --eeeeceeeeeeeeccCC------CCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126 489 --KKLCSKFLHSFQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 489 --~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 559 (660)
... ..... ...+|.. ....|.+++|+|++++|++ +.||.|++||+.+++.+..+..+ |...|.+++
T Consensus 227 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~-- 301 (342)
T 1yfq_A 227 GDDYN-SSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA-- 301 (342)
T ss_dssp CCSTT-CTTCE-EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE--
T ss_pred Ccccc-cccce-eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc-cCCCceEec--
Confidence 100 01122 2333320 0148999999999999998 58999999999999998887642 288999999
Q ss_pred cCCCEEEEEecCCe-EEEEE
Q 006126 560 CDGKCIYVSCKSGH-VKVFD 578 (660)
Q Consensus 560 ~dg~~l~sg~~dg~-I~iwd 578 (660)
|++++|++|+.||. .+.|.
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSS
T ss_pred CCCCeEEEEecCCccccccc
Confidence 99999999999998 55554
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-31 Score=275.10 Aligned_cols=248 Identities=15% Similarity=0.173 Sum_probs=208.2
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|.+++|+|+|++|++++.||.|++|++..... ..+..+ .+|...|++++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 67 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCGG
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEe--cCCCCcEEEEEeCCCC
Confidence 3999999999999999999999999999999864322 111111 1699999999997
Q ss_pred -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCc--eeeEeeccC
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 456 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~ 456 (660)
+.+|++++ ||.|++||+.+++ ....+..|...|.+++|+|+ + .|++++.|+.|++||+.++. ....+.+|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 68999999 9999999999987 77778889999999999999 8 99999999999999999873 345667899
Q ss_pred CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---Cc
Q 006126 457 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 520 (660)
Q Consensus 457 ~~v~~l~~sp-------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~ 520 (660)
..|.+++|+| ++.++++++.||.|++||++++.... .... ...+|. ..|.+++|+|+ +.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence 9999999999 69999999999999999998754321 1222 455677 68999999999 89
Q ss_pred EEEE-EecCcEEEEeCCCCc---eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 521 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 521 ~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
+|++ +.|+.|++||++++. ....+....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9998 589999999998864 2233333346889999999999999999999999999999854
No 100
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4e-31 Score=274.88 Aligned_cols=280 Identities=13% Similarity=0.103 Sum_probs=223.7
Q ss_pred CCCCCeEEEEEecC---CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe
Q 006126 309 SFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 385 (660)
Q Consensus 309 ~h~~~V~~~~~spd---g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 385 (660)
+|.+.|.+++|+|+ |++|++|+.||.|++|++.+.... ...... +|...|.+++|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~ 95 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------IPKAQQ--MHTGPVLDVCWS 95 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------EEEEEE--ECSSCEEEEEEC
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------eEEEec--cccCCEEEEEEC
Confidence 49999999999999 699999999999999998763221 101111 699999999999
Q ss_pred --CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEE--cCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 386 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~--sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
+++|++++ ||.|++||+.+++... +..|...|.+++| +|++ .|++++.|+.|++||+++++.+..+..+. .+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 88999999 9999999999998776 4578999999999 8999 99999999999999999999998888664 56
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE----EEE-EecCcEEEEe
Q 006126 460 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVYE 534 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~-~~d~~i~iwd 534 (660)
.++.+.+ ..+++++.++.+.+||++..... .......+. ..+.++.+.++... +++ +.|+.|++||
T Consensus 174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 174 YCADVIY--PMAVVATAERGLIVYQLENQPSE----FRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEEEET--TEEEEEEGGGCEEEEECSSSCEE----EEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred eEEEecC--CeeEEEeCCCcEEEEEeccccch----hhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 6666664 58888999999999999885422 111112222 45667777665543 666 6999999999
Q ss_pred CCCC---ceeeeecCCCCCC------------CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 535 APTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 535 ~~~~---~~~~~~~~~~~~~------------~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++.. ..+..+.. |.. .|++++|+|++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 245 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~- 314 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-------QL- 314 (368)
T ss_dssp SSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CC-
T ss_pred cCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-------CC-
Confidence 9877 44555544 232 79999999999999999999999999999999888776 33
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
...+. +++|+| ++.+|++++.|+..+.|++.
T Consensus 315 ~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 315 DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGC
T ss_pred CCCce--EEEECC-CCCeEEEEeccccccccccc
Confidence 44455 999999 89999999999866655543
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.8e-31 Score=269.65 Aligned_cols=253 Identities=13% Similarity=0.142 Sum_probs=210.8
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|.+++|+|+|++|++++.||.|++|++.++.... ....... +|...|.+++|+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~~--~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-----------------ELSDSWR--AHDSSIVAIDWASPE 69 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-----------------EEEEEEE--CCSSCEEEEEECCGG
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------eecceec--cCCCcEEEEEEcCCC
Confidence 499999999999999999999999999999987653210 0111111 699999999998
Q ss_pred -CCEEEEEe-CCcEEEEECCCC---------eEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCceeeE
Q 006126 386 -GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~---------~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
+.+|++++ ||.|++||+.++ +....+..|...|.+++|+|+ + .+++++.|+.|++||+++++.+..
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 57999999 999999999887 667888899999999999999 8 999999999999999998876544
Q ss_pred ee-------------ccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126 452 LK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515 (660)
Q Consensus 452 ~~-------------~~~~~v~~l~~sp~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 515 (660)
+. .|...+.++.|+|+ +..+++++.|+.+.+|+...+... .+. ...+|. ..|.+++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-~~~~h~---~~i~~~~~ 222 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH---VAA-KLPGHK---SLIRSISW 222 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE---EEE-ECCCCC---SCEEEEEE
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee---eee-ecCCCC---cceeEEEE
Confidence 43 57889999999997 999999999999988888775421 222 345676 69999999
Q ss_pred ecCC----cEEEE-EecCcEEEEeCCCC----------------------------------------------ceeeee
Q 006126 516 HPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NHTSQL 544 (660)
Q Consensus 516 sp~~----~~l~~-~~d~~i~iwd~~~~----------------------------------------------~~~~~~ 544 (660)
+|++ .+|++ +.|+.|++||++++ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 78888 58999999999764 344444
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 545 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 545 ~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
. .|...|++++|+|++++|++|+.||.|+||++.+++....+.
T Consensus 303 ~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 303 D--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp C--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred e--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 3 368899999999999999999999999999999887665543
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.4e-31 Score=269.78 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=206.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcC--CC-eEEEEeCCCeEEEEeC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP 443 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp--~~-~l~s~~~d~~I~iwd~ 443 (660)
+|...|++++|+ +.+|++++ ||.|++||+.++ +....+.+|...|.+++|+| ++ +|++|+.|+.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 799999999999 88999999 999999999876 46777889999999999999 58 9999999999999999
Q ss_pred CCC---------ceeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------eeeccCC
Q 006126 444 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------FQTGLVP 505 (660)
Q Consensus 444 ~~~---------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~ 505 (660)
+++ +.+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++......... ...+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL- 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence 887 557788899999999999999 9999999999999999999865433222110 112344
Q ss_pred CCCCeEEEEEecC---CcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCC----CEEEEEecCCeEEEE
Q 006126 506 ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF 577 (660)
Q Consensus 506 ~~~~v~~~~~sp~---~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg----~~l~sg~~dg~I~iw 577 (660)
..+.+++|+|+ +.++++ +.++.+.+|+...++.........|...|++++|+|++ ++|++|+.||.|++|
T Consensus 168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 68999999997 888888 58888988888777653333333478999999999998 899999999999999
Q ss_pred ECCCC----------------------------------------------eeEEEeecccccCCCCcCcccceEEEEEe
Q 006126 578 DTSTL----------------------------------------------ELRCQINLTAYAQPGTISLELYPLVIAAH 611 (660)
Q Consensus 578 d~~~~----------------------------------------------~~~~~~~~~~~~~~gh~~~~v~~~~v~~s 611 (660)
|+.++ +.+..+. +| ...+. +++|+
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~s 315 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEVW--SVSWN 315 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEEC-------TT-SSCEE--EEEEC
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccEE--EEEEc
Confidence 99875 2222222 44 34444 99999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 612 PLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
| ++++|++++.||.|+||++.+++.
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred C-CCCEEEEecCCCcEEEEecCcCcc
Confidence 9 899999999999999999988753
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.1e-31 Score=281.76 Aligned_cols=288 Identities=11% Similarity=0.026 Sum_probs=229.9
Q ss_pred CCeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CC
Q 006126 312 GRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 387 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~ 387 (660)
.....++++|+...++ +++.||.|+||++....... ..+.. ..+|...|.+++|+ ++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-----------------~~~~~--~~~h~~~V~~~~~~p~~~~ 95 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-----------------KNVPL--VCGHTAPVLDIAWCPHNDN 95 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-----------------TTCCC--BCCCSSCEEEEEECTTCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-----------------CCCce--EecCCCCEEEEEeCCCCCC
Confidence 3445688998876444 57889999999986543200 01111 12799999999998 67
Q ss_pred EEEEEe-CCcEEEEECCCC-------eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe--ecc
Q 006126 388 HLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGH 455 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~-------~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~--~~~ 455 (660)
+|++|+ ||.|++||+.++ +.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+++++.+..+ .+|
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 999999 999999999987 6678889999999999999997 8999999999999999999999999 789
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----ecCcEE
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQID 531 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~d~~i~ 531 (660)
...|.+++|+|++++|++++.||.|++||+++++. +..+..+|.. ..+.+++|+|++.+++++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 99999999999999999999999999999998653 3322245552 348999999999999987 689999
Q ss_pred EEeCCCCce-eeeecCCCCCCCeEEEEEccCCCEEEE-EecCCeEEEEECCCCee-EEEeecccccCCCCcCcccceEEE
Q 006126 532 VYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVI 608 (660)
Q Consensus 532 iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~s-g~~dg~I~iwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v 608 (660)
+||+++++. +..... .+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..+ .| ...+. ++
T Consensus 249 iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-----~~-~~~v~--~~ 319 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-----SS-KESQR--GM 319 (402)
T ss_dssp EEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----CC-SSCCS--EE
T ss_pred EEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----cc-CCccc--ce
Confidence 999988765 333322 35778999999999999975 55799999999999874 4444422 11 34455 99
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 609 AAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 609 ~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+|+| ++.++++ .|+.+++|++.+++.
T Consensus 320 ~~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 320 GYMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEec-cccccee--cceeEEEEEcCCCcE
Confidence 9999 7887765 577999999988754
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-32 Score=296.59 Aligned_cols=279 Identities=12% Similarity=0.047 Sum_probs=208.1
Q ss_pred eeeEecCC------CCEEEEEeCCCcEEEEeccCcCCCc-ce-----eeeecCCCCCCCCeEEEEEecCCCEEEEEECCC
Q 006126 266 RESTSLPD------ADSAVCAKSLEKSVNLKLQLINEPS-EC-----RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 333 (660)
Q Consensus 266 ~~~~~spd------g~~l~s~~~dg~i~iwd~~~~~~~~-~~-----~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg 333 (660)
..+.|+|+ +.+||+++.||+|++||+....... .. ....+. +|...|.+++|+|++ .|++|+.||
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~--~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS--LADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC--CTTTCEEEEEESSSS-EEEEEETTS
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE--cCCCCEEEEEecCCC-eEEEEeCCC
Confidence 34688886 6799999999999999997532110 00 011233 489999999999865 799999999
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEE--EEe--C-CEEEEEe-CCcEEEEECCCCeE
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQT 407 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s--~-~~l~s~~-dg~I~iwd~~~~~~ 407 (660)
+|++||+.++.. ..... .+|...|.++ +|+ + .+|++++ |++|++||+.++++
T Consensus 288 tV~lWD~~~~~~--------------------~~~~~--~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~ 345 (524)
T 2j04_B 288 FVAEFDLTDPEV--------------------PSFYD--QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345 (524)
T ss_dssp EEEEEETTBCSS--------------------CSEEE--ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred EEEEEECCCCCC--------------------ceEEe--ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence 999999875432 00000 1699999999 456 5 6899999 99999999999887
Q ss_pred EEEEcCCCC--CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 408 LATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 408 ~~~~~~~~~--~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
...+.+|.. .|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++||
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 777766653 57899999999 999999999999999999998889999999999999999999999999999999999
Q ss_pred cCCCeeeeceeeeeee---eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC-CCceeeeecCCCCCCCeEEEEEcc
Q 006126 485 AVGWKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 485 ~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
+... .+.... ..+.. ..+.+++|+|++..+.... .+.+|+.. ++.++.++.+ |...|.+++|+|
T Consensus 426 ~~~~------~~~~~~~~~~~~~~--~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp 493 (524)
T 2j04_B 426 AARR------LLHGIKNSSATQKS--LRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKIDA--HGINITCTKWNE 493 (524)
T ss_dssp SCSS------TTTCC------CCC--CEEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECC
T ss_pred chHh------hccccccCccceee--eEEEEeccCCCCCeEEccC--CceecccccCCcceeeecC--CCceEEEEECCC
Confidence 8662 122100 01110 2477999999998553322 23344432 4566666654 689999999999
Q ss_pred CCC---EEEEEecCCeEEEEECCC
Q 006126 561 DGK---CIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 561 dg~---~l~sg~~dg~I~iwd~~~ 581 (660)
++. ++++|+.||.|+||++.-
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999864
No 105
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.5e-30 Score=288.82 Aligned_cols=291 Identities=12% Similarity=0.108 Sum_probs=241.1
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCC-eEEEEEe--
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR-- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~s-- 385 (660)
.|.+.|.+++|+|+|++|++++ ++.|.+|++.++.... .....+ .+|... |.+++|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-----------------~~~~~~--~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-----------------PPVVQF--TGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-----------------CSEEEE--CTTTTSCEEEEEECSS
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-----------------ccceEE--ecCCCceEEEEEECcC
Confidence 4899999999999999999998 7899999987551000 111111 179999 9999998
Q ss_pred --CCEEEEEe-CCcEEEEECCCC--------eEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCcee
Q 006126 386 --GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTK 449 (660)
Q Consensus 386 --~~~l~s~~-dg~I~iwd~~~~--------~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~ 449 (660)
+++|++++ ||.|++||+.++ +....+..|...|.+++|+|++ .+++++.+ +.|++|| .++.+
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~ 153 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL 153 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence 47999999 999999999755 6777888999999999999999 99999987 6899998 56788
Q ss_pred eEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC---CeEEEEEecC-CcEEEE
Q 006126 450 AKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QIHLLS 524 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~~ 524 (660)
..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++. +. ...+|. . .|.+++|+|+ ++++++
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-----~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-----SA-SDRTHH---KQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-----EE-EECSSS---CTTCCEEEEEECSTTCCEEEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-----ee-eecccC---CCCceEEEEEECCCCCCEEEE
Confidence 89999999999999999998 899999999999999988543 23 344565 5 7999999999 999998
Q ss_pred -EecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCc
Q 006126 525 -IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 601 (660)
Q Consensus 525 -~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~ 601 (660)
+.|+.|++||+++++.+..+... .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+. ...
T Consensus 225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~ 297 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQL 297 (615)
T ss_dssp EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCG
T ss_pred EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC------Ccc
Confidence 58999999999999998887321 368999999999 99999999999999999999999888876431 011
Q ss_pred ccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 602 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 602 ~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
...+.++.|. ++.++++++.||.|++||+.+++...
T Consensus 298 ~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 298 GNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp GGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred cCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEE
Confidence 2234477774 68899999999999999999876543
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-31 Score=273.87 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~ 445 (660)
+|...|++++|+ +++|++++ ||.|++||+. +++....+.+|...|++++|+|+ + .|++|+.|+.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 799999999999 88999999 9999999998 66778889999999999999987 7 999999999999999999
Q ss_pred Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec----
Q 006126 446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 517 (660)
Q Consensus 446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---- 517 (660)
++ .+..+..|...|.+++|+|+ +.++++++.|+.|++||++++.... .. ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~-~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC---EE-EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee---eE-EecCCC---CceEEEEEcCcccc
Confidence 87 67788889999999999999 9999999999999999999854221 11 344566 6899999999
Q ss_pred ---------CCcEEEE-EecCcEEEEeCCCCce----eeeecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEECC
Q 006126 518 ---------DQIHLLS-IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 518 ---------~~~~l~~-~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d---g~~l~sg~~dg~I~iwd~~ 580 (660)
++.++++ +.|+.|++||++++.. ...+. .|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6899998 5899999999987653 33443 47899999999999 8999999999999999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
++......... ...+| ... +.+++|+| ++.+|++++.||.|++|++..+
T Consensus 240 ~~~~~~~~~~~--~~~~~-~~~--v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLL--KEEKF-PDV--LWRASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEES--SSSCC-SSC--EEEEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeee--ccccC-CCc--EEEEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 87422111110 01122 333 44999999 8999999999999999999854
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=2e-29 Score=269.09 Aligned_cols=280 Identities=16% Similarity=0.120 Sum_probs=227.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
...+.+++|+|++.++++++.++.|++||..+++.... ...+. ..+|...|.+++|+ +.+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~------~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEK------YKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHH------HHTTCCEEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------cCccc------ccccCCceeEEEEcCCCEE
Confidence 45577999999777778888889999999877654110 00000 01688899999998 777
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEe
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 465 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 465 (660)
+++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence 88888 8999999999999999999999999999999999 66 55668999999999999888887754 459999999
Q ss_pred CCCCEEEEEe--------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126 466 LSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 535 (660)
Q Consensus 466 p~~~~l~s~s--------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~ 535 (660)
|+|+++++++ .|+.|++||+++++..... .+. ..+.+++|+|+++.+++ + .++.|++||+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-------EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-------cCC---CCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 9999999888 5889999999986543221 222 46889999999987655 4 7899999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec---------------CCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---------------SGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. .
T Consensus 333 ~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~ 400 (433)
T 3bws_A 333 KEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------G 400 (433)
T ss_dssp TTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------S
T ss_pred CCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------C
Confidence 9998887774 3677999999999999998876 57999999999998887753 2
Q ss_pred cccceEEEEEecCCCCEEEEEeC-CCeEEEEeCCC
Q 006126 601 LELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 634 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~~~ 634 (660)
.. +.+++|+| ++++|++++. |++|++|++..
T Consensus 401 ~~--~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQ--PTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SS--EEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred CC--CceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 22 44999999 8999988775 99999999863
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.6e-30 Score=275.74 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=229.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC--------------c-----------
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK--------------L----------- 365 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~----------- 365 (660)
..++.+++|+|+|++|+++ .++.|.+||+.+++.... +..|..... .
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEF-------AGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEE-------EEEEECCC---------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCccee-------eeecCCccccccccccccchhhccccccccccccc
Confidence 4578999999999966655 578999999988872110 011110000 0
Q ss_pred ----------------eeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEEEECC--CCeEEEEEc--CCCCCeEEE
Q 006126 366 ----------------VMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYF 421 (660)
Q Consensus 366 ----------------~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~iwd~~--~~~~~~~~~--~~~~~v~~v 421 (660)
........+|...|.+++|+ +.+| ++++ ||.|++||+. +++.+..+. .+...|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 00000001466789999999 7785 7887 9999999999 888888876 667899999
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceee----EeeccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCS 493 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~----~~~~~~~~v~~l~~sp~---~~~l~s~s~dg~i~vwd~~~~~~~~~ 493 (660)
+|+|++ .|++|+.|+.|++|++.+++... .+.+|...|++++|+|+ +++|++++.|+.|++||++++.
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---- 231 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---- 231 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----
Confidence 999999 99999999999999998877554 77889999999999999 9999999999999999999854
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCC-----------------------CC
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KM 549 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------------------~~ 549 (660)
.+.....+|. ..|.+++|+ ++++|++ +.|+.|++||+++++++..+... ..
T Consensus 232 -~~~~~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 -IVDKWLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp -CEEEECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred -eeeeeecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 3332355777 689999999 9999999 58999999999999988777531 12
Q ss_pred CCCeEEEEEccCCCEEEEEe-cCCeEEEEEC--CCC---eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 550 DLPITYATYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
...|.+++|+|++++|++++ .|+.|+||++ .++ +.+..+. +| .. +.+++|+| ++.++++++.
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------~~--~~--v~~~~~~~-~~~~v~~~~~ 374 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------FP--YN--VISLSAHN-DEFQVTLDNK 374 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-------CS--SC--EEEEEEET-TEEEEEECCT
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-------cC--Cc--eEEEEecC-CcEEEEEecc
Confidence 46799999999999999999 8999999999 555 5555554 22 23 45999999 5544444333
Q ss_pred ------CCeEEEEeCCCCceecc
Q 006126 624 ------NGRVHVIEPLESEVEWG 640 (660)
Q Consensus 624 ------Dg~v~iw~~~~~~~~w~ 640 (660)
+..|.+|.+.....+|.
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEE
T ss_pred cCCCCCCcceEEEEEEcCCCeEE
Confidence 45689998765544453
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=3.4e-30 Score=267.89 Aligned_cols=292 Identities=11% Similarity=0.124 Sum_probs=225.4
Q ss_pred CCccccccCCCC-CCceeecCCCCceeeEecCC---CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEE
Q 006126 242 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRL 317 (660)
Q Consensus 242 ~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~spd---g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~ 317 (660)
..++..+.+|.. |..+ .|+|+ |++|++|+.||.|++||+.. .+......+.. |...|.++
T Consensus 29 ~~~~~~~~~h~~~v~~~-----------~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~--h~~~v~~~ 92 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCL-----------SFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQM--HTGPVLDV 92 (368)
T ss_dssp TCCEECSSCCSSCEEEE-----------EECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEEEEEE--CSSCEEEE
T ss_pred cceeEeccCCCCceEEE-----------EEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEEEecc--ccCCEEEE
Confidence 445666777766 5554 99999 69999999999999999984 13333223433 89999999
Q ss_pred EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--e--CCEEEEEe
Q 006126 318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS 393 (660)
Q Consensus 318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s--~~~l~s~~ 393 (660)
+|+|++++|++++.||.|++||+.++.. +... +|...|.+++| + +.+|++++
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------------~~~~---~~~~~v~~~~~~~~~~~~~l~~~~ 148 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQA---------------------IQIA---QHDAPVKTIHWIKAPNYSCVMTGS 148 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEEE---ECSSCEEEEEEEECSSCEEEEEEE
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCc---------------------eeec---cccCceEEEEEEeCCCCCEEEEcc
Confidence 9999999999999999999999876653 1111 58999999999 6 67899999
Q ss_pred -CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe--eccCCCeEEEEEeCCCCE
Q 006126 394 -GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 394 -dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~ 470 (660)
||.|++||+.+++.+..+..+. .+.++.+.++ .+++++.++.+++|+++........ ..+...+.++.+.+++..
T Consensus 149 ~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 149 WDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp TTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC
Confidence 9999999999999988888665 5556666544 7888899999999999876543322 224556677777665554
Q ss_pred ----EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC---------CCCeEEEEEecCCcEEEE-EecCcEEEEeCC
Q 006126 471 ----LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE---------TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 536 (660)
Q Consensus 471 ----l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~ 536 (660)
+++++.||.|++||++..... ..+. ...+|... ...|.+++|+|++++|++ +.||.|++||+.
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINPPNPA--KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSCSCHH--HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCeEEEecCCCcEEEEecCCCCcc--ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 999999999999999885320 1112 22333300 026999999999999999 589999999999
Q ss_pred CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC
Q 006126 537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~ 580 (660)
+++++..+.. |...|.+++|+|+|++|++|+.|+..+.|++.
T Consensus 304 ~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 304 ARTKLKTSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTEEEEECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCcEEEEecC--CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999888864 68999999999999999999998765555443
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.9e-31 Score=279.07 Aligned_cols=265 Identities=13% Similarity=0.116 Sum_probs=206.8
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 388 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~ 388 (660)
-...|.+++|||||+++|+++.|++|+ |.+... .+ .+|...|++++|+ ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---------------------~l-----~gh~~~v~~V~FsPdg- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---------------------DI-----NCNSKNLFHVKEFPLE- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---------------------CC-----SSBGGGTEEEEEECCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---------------------ee-----cCCCccEEEEEECCCC-
Confidence 478999999999999999999999998 532221 22 1799999999998 22
Q ss_pred EEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-----CeEE
Q 006126 389 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC 461 (660)
Q Consensus 389 l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-----~v~~ 461 (660)
.+..|++.+++....+. .|...|.+++|+|+| .|++++.||.|++||..+ ++..+. |.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 44455555444333333 557889999999999 999999999999999543 666667 665 4999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec--eeeeee---eeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 536 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~ 536 (660)
++|||||++|++|+.||+|++||+.++..... ..+.++ ..+|. ..|.+++|+||| .++++.|++|++||+.
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 99999999999999999999999998532000 122322 35676 699999999999 5455799999999998
Q ss_pred CCcee---eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE--e
Q 006126 537 TLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H 611 (660)
Q Consensus 537 ~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~--s 611 (660)
.+... +++.. .|...|.+++|+ |+.||+++ ++.|++||+.+++...... || ...++ .++| +
T Consensus 211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~~s 276 (588)
T 2j04_A 211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLNHE 276 (588)
T ss_dssp SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEETTC
T ss_pred CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEeeeC
Confidence 77732 34533 367899999999 68999997 6999999999987643322 44 55566 8999 9
Q ss_pred cCCCCEEEEEeCCCeEEEEeCC
Q 006126 612 PLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 612 p~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
| |+..+++++.||+ ++|...
T Consensus 277 ~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 K-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-SCEEEEECSSCEE-EEEESS
T ss_pred C-CCCEEEEEcCCCC-EEEeec
Confidence 9 8999999999999 999975
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=5.3e-30 Score=266.12 Aligned_cols=285 Identities=10% Similarity=0.021 Sum_probs=211.0
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
|.+.|.+++|+|||++|++|+.++ +++|+..+...... .+...+..+++. ++
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-------------------------QEMRHLSKVRMLHRTN 71 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------EECSCCCEEEECTTSS
T ss_pred CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------eecCCeEEEEEcCCCC
Confidence 899999999999999999888775 77998765543110 011235566666 66
Q ss_pred EEE-EEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCC-ceeeEeeccCCCeEEEEE
Q 006126 388 HLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 464 (660)
Q Consensus 388 ~l~-s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~-~~~~~~~~~~~~v~~l~~ 464 (660)
.++ +++ |++|++||+.+++++..+. +...|.++.++++. ++++ .|+.|++||+.++ +.+..+.. ....+++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 664 455 7899999999999999886 56689999999886 2223 3789999999988 77766654 4445667
Q ss_pred eCCCCEEEE--EeCCCcEEEEEcCCCeeee----------cee-eeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCc-
Q 006126 465 SLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ- 529 (660)
Q Consensus 465 sp~~~~l~s--~s~dg~i~vwd~~~~~~~~----------~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~- 529 (660)
++ .++++ |+.||.|++||++++.... ..+ +. ...+|. ..|.+++|+|+|++|++ +.|++
T Consensus 146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp ET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCSE
T ss_pred Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCCE
Confidence 77 56666 5789999999999753110 011 33 566887 79999999999999999 58998
Q ss_pred EEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc-----c-----------
Q 006126 530 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-----Y----------- 593 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~-----~----------- 593 (660)
|++||+++++++..+....|...|.+++|+|+|++|++|+.|+.|+|||+..+.....-.... +
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 999999999999998743378999999999999999999999999999998653221111000 0
Q ss_pred cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.+.++ .... ..++|+| |++++++++.||.+++|++..++
T Consensus 300 ~~~~~-~~~~--~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 300 LSVDK-HVRG--CKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCT-TCCC--CEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred eccCC-CCCc--eEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 00110 1112 3789999 89999999999999999987654
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=265.72 Aligned_cols=281 Identities=9% Similarity=0.016 Sum_probs=213.5
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.+.+|+.++++|+.||+|++||+.++ .....+ ....|.++.|+|+ +++++.|+++++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~---~~~~~~------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~------- 103 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDS---KTITTI------TTPNPRTGGEHPA---IISRGPCNRLLLLYPG------- 103 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSS---SCEEEE------EEECCCTTCCCCS---EEEECSTTEEEEEETT-------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCC---cEEEEE------ecCCceeeeeCCc---eEEecCCCeEEEEEcc-------
Confidence 55678899999999999999999852 222222 1456778888888 8999999999999753
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC--
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLP-- 425 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp-- 425 (660)
+.+.+|++.+++.++.+. .|...|.+++|+|
T Consensus 104 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (343)
T 3lrv_A 104 ----------------------------------------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEV 137 (343)
T ss_dssp ----------------------------------------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC--
T ss_pred ----------------------------------------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCC
Confidence 234467777777666555 6778899999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeecc
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 503 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 503 (660)
++ ++++|+.|+.|++||+++++....... |...|.+++|+|+|.+|++|+.||.|++||+++++.. ...+..+|
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~h 213 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVDE 213 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCCT
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEeccC
Confidence 99 999999999999999999988776644 5668999999999999999999999999999986432 02122237
Q ss_pred CCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-CCCCCe--EEEEEccCCCEEEEEec-CCeEEEEEC
Q 006126 504 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDT 579 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v--~~~~~s~dg~~l~sg~~-dg~I~iwd~ 579 (660)
. +.|.+++|+|+|.+|+++.++.|++||+++++.+..+... .|...+ .+++|+|+|++|++++. |+.|+||++
T Consensus 214 ~---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 214 E---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp T---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred C---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 7 7999999999999999976779999999998876555421 122333 46999999999999998 999999999
Q ss_pred CCCeeEEEeecccccCCCCcCcccceEEEEEec--CCCCEEEEEeCCCeEEEEeCCCC
Q 006126 580 STLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp--~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.+........ ++ ..+.|+| .+...+++++.||.++++-....
T Consensus 291 ~~~~~~~~~~------------~~--~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 291 DKKTKNWTKD------------EE--SALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp CTTTCSEEEE------------EE--EECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred cccccceEec------------Cc--eeEecCccccccceeEEEecCCceEEEEecCC
Confidence 7665433321 12 2556665 24668888888998888765443
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=257.75 Aligned_cols=316 Identities=11% Similarity=0.079 Sum_probs=235.6
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccc
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~ 353 (660)
..+++++.|+.|++||+.+ +++... +. +...+.+++|+|+|+++ ++++.|+.|++||..+++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----NKVTAT-IP---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEE-EE---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--------
T ss_pred EEEEEcCCCCEEEEEECCC----CeEEEE-ee---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--------
Confidence 4678889999999999984 444332 32 34569999999999987 5666899999998776643
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-e
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 428 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~ 428 (660)
+... .+...+.+++|+ +++|+.++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus 67 -------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 67 -------------IATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK 129 (391)
T ss_dssp -------------EEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred -------------EEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE
Confidence 1111 133389999999 77776555 699999999999998887754 468999999999 5
Q ss_pred E-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 429 F-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 429 l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+++++.... .. +.
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------~~-~~-- 199 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------VK-VE-- 199 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------EE-CS--
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------Ee-cC--
Confidence 5 78888999999999999988888765 457999999999987 5677889999999998653321 11 22
Q ss_pred CCCeEEEEEecCCcEEEEE----ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE-EEEecCCeEEEEECCC
Q 006126 507 TTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST 581 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l-~sg~~dg~I~iwd~~~ 581 (660)
..+.+++|+|++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+|+++ ++++.|+.|++||+.+
T Consensus 200 -~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 478999999999999884 478999999999998888765 3458899999999988 5668899999999999
Q ss_pred CeeEEEeecccccCC-C------CcCcccceEEEEEecCC-----C--CEEEEEeCCCeEEEEeCCCCce
Q 006126 582 LELRCQINLTAYAQP-G------TISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 582 ~~~~~~~~~~~~~~~-g------h~~~~v~~~~v~~sp~d-----~--~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++.+..+..+..... | +......+..+...+.. . -.+...+.|.++++|++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 999888764311100 0 00000111122222211 1 3466667789999999988764
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.7e-29 Score=262.19 Aligned_cols=282 Identities=10% Similarity=0.085 Sum_probs=207.6
Q ss_pred ccccccCCCC-CCceeecCCCCceeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC
Q 006126 244 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 322 (660)
Q Consensus 244 ~~~~~~g~~~-v~~~~~~~~~~~~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd 322 (660)
+++.+.+|.. |.++ .|+|||++|++|+.++ ++||+... ...... . +...+..+++.++
T Consensus 11 ~~~~~~~h~~~V~~v-----------~fs~dg~~la~g~~~~-~~iw~~~~----~~~~~~-~----~~~~~~~~~~~~~ 69 (355)
T 3vu4_A 11 PIVPENHVSNPVTDY-----------EFNQDQSCLILSTLKS-FEIYNVHP----VAHIMS-Q----EMRHLSKVRMLHR 69 (355)
T ss_dssp --------CCCCCEE-----------EECTTSSEEEEECSSE-EEEEEETT----EEEEEE-E----ECSCCCEEEECTT
T ss_pred CccccccCCCceEEE-----------EECCCCCEEEEEcCCE-EEEEecCC----cceeee-e----ecCCeEEEEEcCC
Confidence 4444455555 5555 9999999999998776 78999873 333221 1 2335888999999
Q ss_pred CCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEE
Q 006126 323 GDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFS 401 (660)
Q Consensus 323 g~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd 401 (660)
+++++ +++.|++|++||..+++. +... .+...|.+++++.+.++++.++.|++||
T Consensus 70 ~~~~~~~~~~d~~v~iWd~~~~~~---------------------~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d 125 (355)
T 3vu4_A 70 TNYVAFVTGVKEVVHIWDDVKKQD---------------------VSRI---KVDAPVKDLFLSREFIVVSYGDVISVFK 125 (355)
T ss_dssp SSEEEEECSSTTEEEEEETTTTEE---------------------EEEE---ECSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred CCEEEEEECCccEEEEEECCCCcE---------------------EEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEE
Confidence 98884 566789999998776653 2111 2566899999997777777899999999
Q ss_pred CCCC-eEEEEEcCCCCCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCc----------------eeeEeeccCCCeEEE
Q 006126 402 LETF-QTLATFANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCL 462 (660)
Q Consensus 402 ~~~~-~~~~~~~~~~~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~----------------~~~~~~~~~~~v~~l 462 (660)
+.++ +.+..+.. ....+++++ . ..++ |+.||.|++||+.++. .+..+.+|...|+++
T Consensus 126 ~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~ 201 (355)
T 3vu4_A 126 FGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV 201 (355)
T ss_dssp SSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred CCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence 9988 66655544 444566777 5 3333 7899999999999865 267889999999999
Q ss_pred EEeCCCCEEEEEeCCCc-EEEEEcCCCeeeeceeeeeeeec-cCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCc
Q 006126 463 AYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 539 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~ 539 (660)
+|+|+|++|++++.|++ |++||+++++. +.++..+ |. ..|.+++|+|+|++|++ +.|++|++||++.+.
T Consensus 202 ~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-----~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 202 RLNRKSDMVATCSQDGTIIRVFKTEDGVL-----VREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EECTTSSEEEEEETTCSEEEEEETTTCCE-----EEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcE-----EEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 99999999999999998 99999998643 3323334 66 79999999999999999 589999999997653
Q ss_pred eee--eec-------------------CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 540 HTS--QLV-------------------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 540 ~~~--~~~-------------------~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
... .+. ..........++|++||++|++++.||.+++|++..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 274 DNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred CcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 211 100 0011233467999999999999999999999998654
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-29 Score=266.96 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=192.8
Q ss_pred CCCCeEEEEEecCCCEE-EEEECCCcEEEEecc--CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-
Q 006126 310 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 385 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 385 (660)
|.+.|.+++|+|+|++| ++++.||.|++|++. ++.. +..+....|...|.+++|+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------LKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------EEEEEEEECSSCEEEEEECT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------eeeeecccCCCCceEEEEcC
Confidence 56689999999999996 888899999999987 4432 1111001377889999999
Q ss_pred -CCEEEEEe-CCcEEEEECCCCeEEE----EEcCCCCCeEEEEEcCC---C-eEEEEeCCCeEEEEeCCCCceeeE-eec
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LKG 454 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~~~~----~~~~~~~~v~~v~~sp~---~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~ 454 (660)
+.+|++++ +|.|++|++.+++... .+.+|...|.+++|+|+ + +|++|+.|+.|++||+.+++.+.. +.+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 88999999 8999999998877554 67789999999999999 8 999999999999999999988877 568
Q ss_pred cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-------------------eccCCCCCCeEEEEE
Q 006126 455 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------------------TGLVPETTIVNHIQF 515 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~v~~~~~ 515 (660)
|...|.+++|+ ++++|++++.|+.|++||+++++........... .... ..|.+++|
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~i~~ 315 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE---FAVSKIIK 315 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC---CCEEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce---EEEEEEEE
Confidence 99999999999 9999999999999999999997654433221000 0111 47899999
Q ss_pred ecCCcEEEE-E-ecCcEEEEeC--CCC---ceeeeecCCCCCCCeEEEEEccCCCEEEEEec------CCeEEEEECC
Q 006126 516 HPDQIHLLS-I-HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS 580 (660)
Q Consensus 516 sp~~~~l~~-~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~------dg~I~iwd~~ 580 (660)
+|+++++++ + .++.|++||+ .++ ..+..+.. + ..|.+++|+|++.++++++. +..|.+|.+.
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999999998 4 6899999999 555 55666654 3 78999999996544444443 4557888654
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.4e-29 Score=265.12 Aligned_cols=244 Identities=15% Similarity=0.155 Sum_probs=201.1
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCC----------CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCe
Q 006126 374 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 437 (660)
Q Consensus 374 ~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~----------~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~ 437 (660)
+|.+.|++++|+ +.+|++++ +|.|++||+.+ ......+.+|...|.+++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 699999999999 35788888 89999999986 67788888999999999999998 8999999999
Q ss_pred EEEEeCCCCce-------eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 438 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 438 I~iwd~~~~~~-------~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++.. ...+. ....|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSH-TVDAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSE-EEECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--Cccee-EeecCC---CC
Confidence 99999987422 456678999999999999 788999999999999999998531 12233 334666 68
Q ss_pred eEEEEEecCCc-EEEE-EecCcEEEEeCCC-CceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCC---
Q 006126 510 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 582 (660)
Q Consensus 510 v~~~~~sp~~~-~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~--- 582 (660)
|++++|+|++. ++++ +.||.|++||+++ ..++..+.. |...|++++|+|+++ ++++++.||.|+|||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999997 4666 5899999999998 456667654 689999999999995 7999999999999999872
Q ss_pred -----------eeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCCCc
Q 006126 583 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 583 -----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+++..+. || ...++ +++|+| ++. ++++++.||.|+||++....
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------GH-TAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------CC-SSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHHH
T ss_pred cCccccccCCcceEEEcC-------CC-CCCce--EEEECC-CCCCEEEEEECCCCEEEeEccccc
Confidence 3333332 44 33455 999999 677 99999999999999997653
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.7e-28 Score=261.83 Aligned_cols=251 Identities=14% Similarity=0.180 Sum_probs=201.7
Q ss_pred CCCCeEEEEEecC-CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~~V~~~~~spd-g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
|.+.|.+++|+|+ +.+|++++.||.|++|++........ ..........+. +|...|.+++|+ +
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~~~~--~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDLRLR--GHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSEEEE--CCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcEEec--CCCCCeEEEEeCCCC
Confidence 8999999999997 68999999999999999876321000 000011111111 699999999999 5
Q ss_pred C-EEEEEe-CCcEEEEECCCCeE-------EEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCC---ceeeEe
Q 006126 387 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL 452 (660)
Q Consensus 387 ~-~l~s~~-dg~I~iwd~~~~~~-------~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~---~~~~~~ 452 (660)
. +|++|+ ||.|++||+.++.. ...+.+|...|.+++|+|+ + .|++++.|+.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 899999 99999999987322 4567789999999999995 4 9999999999999999987 577788
Q ss_pred eccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc-EEEE-EecCc
Q 006126 453 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 529 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~-~~d~~ 529 (660)
..|...|++++|+|++. ++++|+.||.|++||+++.. .++. ...+|. ..|.+++|+|+++ ++++ +.|+.
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence 88999999999999887 68899999999999999732 2333 445666 6899999999996 4666 58999
Q ss_pred EEEEeCCCC--------------ceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCCCe
Q 006126 530 IDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 530 i~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~~~ 583 (660)
|++||+... ..+..+. .|...|.+++|+|+++ ++++++.||.|+||++..+.
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 999999762 3444443 4688999999999999 89999999999999997643
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=3.4e-29 Score=263.78 Aligned_cols=300 Identities=8% Similarity=0.026 Sum_probs=197.1
Q ss_pred CCCeEEEEE---ecCCCEEEEEECCCcEEEEeccCCceeee-----------eeccceeEEEecCCCCceeeecccCCCC
Q 006126 311 GGRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLE-----------EENVNMESQLYQPSSKLVMTNDIAADPK 376 (660)
Q Consensus 311 ~~~V~~~~~---spdg~~l~s~s~dg~i~vw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 376 (660)
.....++.| +|++..+++++.|+.|.+|+......... ..........|........ ..|.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 89 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE-----NLHD 89 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC-----C---
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc-----cccC
Confidence 445666777 45555566666788999998654322111 1111112223332211111 1344
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEE-----EEcCCCCCeEEEEEcC--------CC-eEEEEeCCCeEE
Q 006126 377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSIL 439 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~-----~~~~~~~~v~~v~~sp--------~~-~l~s~~~d~~I~ 439 (660)
..+....+. +.+|++++ |++|++||+.++.... .+.+|...|++++|+| |+ +|++|+.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 444444455 67899999 9999999999886543 3568999999999998 77 999999999999
Q ss_pred EEeCCCCceeeEeeccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeeeeceeee-------------------ee
Q 006126 440 VHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLH-------------------SF 499 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------------------~~ 499 (660)
+||+.++..+..+.+|...|.+++|+|++. +|++++.|++|++||+++++........ ..
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 999998888888888999999999999874 7999999999999999986532211000 01
Q ss_pred eeccCCCCCCeEEEEEe-cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe------------------EEEEEc
Q 006126 500 QTGLVPETTIVNHIQFH-PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI------------------TYATYS 559 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~s-p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v------------------~~~~~s 559 (660)
..+|. ..+.++.|+ |+++.+++ +.|+++++||+..++....+.. |...+ ....|+
T Consensus 250 ~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 250 SSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp --CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred ccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEc
Confidence 13454 578899987 79999999 5899999999987765554432 12222 223344
Q ss_pred c--CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 560 C--DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 560 ~--dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
| ++.++++|+.||.|++||+.+++....+. +| ..+|. +++||| ||++||++++|| +.+|++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-------~~-~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-------QL-GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-------EC-SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-------CC-CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 3 44577788899999999999998776655 23 34455 999999 899999998776 666654
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=287.69 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=207.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCC
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~--~~~~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~ 445 (660)
+|.+.|++++|+ +++|++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 799999999999 88999999 9999999998 56778889999999999999988 8 999999999999999998
Q ss_pred Cc--eeeEeeccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec----
Q 006126 446 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 517 (660)
Q Consensus 446 ~~--~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---- 517 (660)
++ .+..+.+|...|++++|+|+ ++.+++|+.||.|++||++++.... .. ...+|. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---~~-~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---ee-EeecCC---CceEEEEecCcccc
Confidence 86 67788889999999999999 9999999999999999999853221 11 344666 6899999999
Q ss_pred ---------CCcEEEE-EecCcEEEEeCCCCc----eeeeecCCCCCCCeEEEEEccC---CCEEEEEecCCeEEEEECC
Q 006126 518 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 580 (660)
Q Consensus 518 ---------~~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~d---g~~l~sg~~dg~I~iwd~~ 580 (660)
++.++++ +.||.|++||++++. ....+. .|...|++++|+|+ ++++++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 589999999998773 344444 47899999999999 9999999999999999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+++....... ....+| ...+. +++|+| ++.++++++.||.|++|++..+.
T Consensus 238 ~~~~~~~~~~--~~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTL--LKEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCB--SSSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEE--eccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 8743221111 111122 44455 999999 89999999999999999998653
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-29 Score=284.70 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=207.0
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---
Q 006126 309 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 385 (660)
Q Consensus 309 ~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--- 385 (660)
+|.+.|.+++|+|+|++|++|+.||.|+||++.++.. ...... .+|...|++++|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l--~~h~~~V~~l~~s~~~ 65 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 65 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCTT
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceec--cCCcCceEEEEecCCC
Confidence 4999999999999999999999999999999864322 111111 1799999999997
Q ss_pred -CCEEEEEe-CCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC--C-eEEEEeCCCeEEEEeCCCCc--eeeEeeccC
Q 006126 386 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 456 (660)
Q Consensus 386 -~~~l~s~~-dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~--~-~l~s~~~d~~I~iwd~~~~~--~~~~~~~~~ 456 (660)
+++|++|+ ||.|++||+.+++ ....+..|...|.+++|+|+ + .+++|+.||.|++||++++. ....+.+|.
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 57999999 9999999999987 67778899999999999999 8 99999999999999998873 345667899
Q ss_pred CCeEEEEEeC-------------CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---Cc
Q 006126 457 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 520 (660)
Q Consensus 457 ~~v~~l~~sp-------------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~ 520 (660)
..|.++.|+| ++.++++|+.||.|++||++++.... .... ...+|. ..|.+++|+|+ +.
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCCC
Confidence 9999999999 58999999999999999998864221 1222 455777 79999999999 89
Q ss_pred EEEE-EecCcEEEEeCCCCcee---eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 521 HLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 521 ~l~~-~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
++++ +.||.|++||+.++... .......|...|++++|+|+|+++++|+.||.|++|++.++
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9998 58999999999886421 12222346889999999999999999999999999999853
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.5e-27 Score=246.53 Aligned_cols=265 Identities=16% Similarity=0.138 Sum_probs=212.6
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 399 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l-~s~~-dg~I~i 399 (660)
..+++++.|+.|++||+.+++. +... .+...+.+++|+ ++++ ++++ |+.|++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 58 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------EEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence 3567888899999998876643 1111 133458999999 7766 5665 899999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeC
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGA 476 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~ 476 (660)
||+.+++.+..+..+. .+.+++|+|++ .+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.
T Consensus 59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC
Confidence 9999999998887665 89999999999 66 45557799999999999988887754 578999999999987 67888
Q ss_pred CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeE
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 554 (660)
|+.|++||+.+++.. . ....+ ..+.+++|+|+++++++ + .++.|++||+++++.+..+.. ...+.
T Consensus 137 ~~~v~~~d~~~~~~~-----~-~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~ 203 (391)
T 1l0q_A 137 DKTVSVINTVTKAVI-----N-TVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPS 203 (391)
T ss_dssp TTEEEEEETTTTEEE-----E-EEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEE
T ss_pred CCEEEEEECCCCcEE-----E-EEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCcc
Confidence 999999999986543 2 22223 36789999999998865 4 678999999999988777743 56789
Q ss_pred EEEEccCCCEEEEEe---cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE-EEEeCCCeEEEE
Q 006126 555 YATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVI 630 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~---~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-~s~s~Dg~v~iw 630 (660)
+++|+|+|+++++++ .++.|++||+.+++.+..+..+ . . +.+++|+| +++++ ++++.|+.|++|
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~-~--~~~~~~s~-dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------P-D--PAGIAVTP-DGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------S-S--EEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--------C-C--ccEEEEcc-CCCEEEEEcCCCCEEEEE
Confidence 999999999999888 6899999999999888777632 2 2 34899999 78876 677899999999
Q ss_pred eCCCCceec
Q 006126 631 EPLESEVEW 639 (660)
Q Consensus 631 ~~~~~~~~w 639 (660)
|+.+++...
T Consensus 272 d~~~~~~~~ 280 (391)
T 1l0q_A 272 DTATNTITA 280 (391)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCcEEE
Confidence 999887643
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.3e-27 Score=251.79 Aligned_cols=274 Identities=13% Similarity=0.058 Sum_probs=218.7
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC--CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCC
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP--DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 343 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~--~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~ 343 (660)
..+.|+|++.++++++.++.|++||..+ +........ ..+|...|.+++|+|+|+++++++.|+.|++||+.++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~ 201 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL 201 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence 3458999888888888999999999984 333332110 0248899999999999999999999999999998765
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEE-EEe-CCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIAT 419 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~-s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~ 419 (660)
+. +.... .|...+.+++|+ +++++ +++ ++.|++||+.+++.+..+..+ ..+.
T Consensus 202 ~~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~ 257 (433)
T 3bws_A 202 AY---------------------KATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPR 257 (433)
T ss_dssp CE---------------------EEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEE
T ss_pred eE---------------------EEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCce
Confidence 43 11111 578889999999 67764 554 899999999999988887654 4589
Q ss_pred EEEEcCCC-eEEEEe--------CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCe
Q 006126 420 YFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~--------~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~ 489 (660)
+++|+|++ .+++++ .|+.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 99999999 888877 5889999999998877665 366689999999999755 566889999999999865
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e---------------cCcEEEEeCCCCceeeeecCCCCCCCe
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLPI 553 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~v 553 (660)
.... +. +. ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. ...+
T Consensus 337 ~~~~-----~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~ 403 (433)
T 3bws_A 337 VQKS-----IP--VF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQP 403 (433)
T ss_dssp EEEE-----EE--CS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSE
T ss_pred EEEE-----ec--CC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCC
Confidence 4321 21 22 578999999999988884 3 46999999999998888764 5678
Q ss_pred EEEEEccCCCEEEEEec-CCeEEEEECCC
Q 006126 554 TYATYSCDGKCIYVSCK-SGHVKVFDTST 581 (660)
Q Consensus 554 ~~~~~s~dg~~l~sg~~-dg~I~iwd~~~ 581 (660)
.+++|+|+|++|++++. |+.|++|++..
T Consensus 404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 404 TGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 99999999999998875 99999999864
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4.7e-27 Score=233.85 Aligned_cols=236 Identities=11% Similarity=0.073 Sum_probs=177.2
Q ss_pred eEEEEEe--CC---EEEEEeCCcEEEEECCCC---eEEEEEcCCCC-------------------------CeEEEEEcC
Q 006126 379 ISCFALR--GS---HLFSASGGKISIFSLETF---QTLATFANPPP-------------------------IATYFILLP 425 (660)
Q Consensus 379 v~~v~~s--~~---~l~s~~dg~I~iwd~~~~---~~~~~~~~~~~-------------------------~v~~v~~sp 425 (660)
+.++-|. +. .+++++...|++|+..++ +.+.++..|.. .|++++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 4555555 22 577888999999999998 78888776654 456777788
Q ss_pred C----C-eEEEEeC--------------------CCeEEEEeC-CCCceeeEeeccCCCeEEEEEeC---CCCEEEEEeC
Q 006126 426 Q----D-LFAFGFD--------------------DSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA 476 (660)
Q Consensus 426 ~----~-~l~s~~~--------------------d~~I~iwd~-~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~s~s~ 476 (660)
| + .+++++. |+.|++|++ .+|+.+..+.+|...++.++|+| ++..|++++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 8 6 6666553 888889998 44788888888888888889988 7799999999
Q ss_pred CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE------------E-EecCcEEEEeCCCCceeee
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~------------~-~~d~~i~iwd~~~~~~~~~ 543 (660)
|++|++||+++++.+ +++ .+|......+.+++|+|+|.+++ + +.|++|++||..+++.+..
T Consensus 202 D~TIkIWDl~TGk~l-----~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 202 MNNIVIWNLKTGQLL-----KKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp TSEEEEEETTTCCEE-----EEE-ECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCcEE-----EEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 999999999997543 322 22221114678889999999874 3 3778999999999988766
Q ss_pred ec---CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 544 LV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 544 ~~---~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
+. +.+|...+.+..++ +.++++|+.|++|+|||+.+++.+..+. ||++..+. .++|+| ||++|++
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaS 343 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLA 343 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEE
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEE
Confidence 52 22355555544444 8899999999999999999999999886 45343333 689999 8999999
Q ss_pred EeCCCeEEEEeC
Q 006126 621 GLTNGRVHVIEP 632 (660)
Q Consensus 621 ~s~Dg~v~iw~~ 632 (660)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999985
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.1e-27 Score=235.10 Aligned_cols=272 Identities=11% Similarity=0.030 Sum_probs=181.4
Q ss_pred EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-C-CcEEEEeccCCceeeeeeccc
Q 006126 276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-T-ATHKLWKWQSNKQSLEEENVN 353 (660)
Q Consensus 276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-d-g~i~vw~~~~~~~~~~~~~~~ 353 (660)
.+++++ ..+|++|+......-.......+ |..+|..++|.||-.-|++..- + ..-.++.
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~s-------------- 116 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHF----AEVPVLQIVPVPDVYNLVCVALGNLEIREIRA-------------- 116 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEEC----CSSCEEEECCCTTCCSCEEEEECSSSEEEEEE--------------
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEec----cCceeEEEEEcCcccceeeeeeccccccceEE--------------
Confidence 344444 57899999986211123333332 7777777777776543333322 1 1111111
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe---CCcEEEEEC-CCCeEEEEEcCCCCCeEEEEEcC---
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP--- 425 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~---dg~I~iwd~-~~~~~~~~~~~~~~~v~~v~~sp--- 425 (660)
..+.+.+....+.....+|...|.. +. ++.+.++. |+.|++|++ .+|+.+..+..|...++.++|+|
T Consensus 117 ---la~spd~~~~~~~l~s~g~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 117 ---LFCSSDDESEKQVLLKSGNIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp ---ECC------CCEEEEEEEEEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred ---EEECCCccccccEEEeCCCeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 1122221111111111123322322 23 44555543 899999999 55888888889999999999999
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCceeeEeeccC---CCeEEEEEeCCCCEE------------EEEeCCCcEEEEEcCCCe
Q 006126 426 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ---NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 426 ~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l------------~s~s~dg~i~vwd~~~~~ 489 (660)
++ .|++|+.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 66 99999999999999999999999998754 367788999999876 567889999999999976
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCC-eEEEEEccCCCEEEE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYV 567 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~s~dg~~l~s 567 (660)
.+....+. .+.+|. ..+.+..+ ++..+++ +.|++|+|||+.+++++.++.+ |... +..++|+|||++|++
T Consensus 272 ~l~v~~~~-~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 272 SVGVMLYC-LPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEEEEC-CCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEE
T ss_pred EEEEEEee-ccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEE
Confidence 55432222 235665 34444444 3778888 4899999999999999999975 4444 456899999999999
Q ss_pred EecCCeEEEEEC
Q 006126 568 SCKSGHVKVFDT 579 (660)
Q Consensus 568 g~~dg~I~iwd~ 579 (660)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999995
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-28 Score=249.70 Aligned_cols=236 Identities=12% Similarity=0.092 Sum_probs=188.1
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCC---------CCceeeEee-c
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC---------TKKTKAKLK-G 454 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~---------~~~~~~~~~-~ 454 (660)
+.++++|+ ||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 67899999 9999999999999888776 455677788887 9999999999999655 555455554 5
Q ss_pred cCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126 455 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 531 (660)
Q Consensus 455 ~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~ 531 (660)
|...|.+++|+| +++++++++.||+|++||+++++. +......+. ..+.+++|+|+|.+++++ .|+.|+
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVHSAKSD---VEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEECCCSS---CCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEecCCC---CceEEEEECCCCCEEEEEcCCCEEE
Confidence 778999999999 999999999999999999998653 221112333 579999999999999994 899999
Q ss_pred EEeCCCCcee-eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126 532 VYEAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 532 iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
+||+++++.+ ..+.. .|..+|++++|+|+|.+|++++ |+.|++||+++++....+.... +| ...+...+++|
T Consensus 196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----~~-~~~~~~~~~~~ 268 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----IP-EFKTGTVTYDI 268 (343)
T ss_dssp EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----C------CCEEEEE
T ss_pred EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----cc-cccccceEEEE
Confidence 9999999887 66654 3789999999999999999999 5599999999987655443210 11 11222236999
Q ss_pred ecCCCCEEEEEeC-CCeEEEEeCCCCceeccC
Q 006126 611 HPLEPNRIALGLT-NGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 611 sp~d~~~l~s~s~-Dg~v~iw~~~~~~~~w~~ 641 (660)
+| ++++|++++. |+.|+||++..+...|..
T Consensus 269 ~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 269 DD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CC-CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 99 8999999998 999999999887776764
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.7e-27 Score=250.87 Aligned_cols=284 Identities=10% Similarity=0.051 Sum_probs=189.7
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCc----ceeeeecCC------------------CCCCCCeEEEEEecCCCEEEE
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPD------------------NSFGGRVVRLIYSHSGDFLVA 328 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~l~~------------------~~h~~~V~~~~~spdg~~l~s 328 (660)
+|++..++.++.|+.|.+|+........ ......... ..|...+....+++++.+|++
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 106 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLAC 106 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEE
Confidence 4555556666678889999875311110 011100000 112333333444556778999
Q ss_pred EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----------CCEEEEEe-CCcE
Q 006126 329 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GGKI 397 (660)
Q Consensus 329 ~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----------~~~l~s~~-dg~I 397 (660)
++.|++|+||+...+..... . .+. ...+|.+.|++++|+ +++|++++ |++|
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~--------~--------~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQ--------H--------VLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp EETTSCEEEEEEETTEEEEE--------E--------EEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred EeCCCcEEEEECCCCcccee--------e--------eec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 99999999999877654111 0 111 112799999999995 46899999 9999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE------------------------
Q 006126 398 SIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK------------------------ 451 (660)
Q Consensus 398 ~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~------------------------ 451 (660)
++||+.++.+...+..|...+.+++|+|++ +|++|+.|++|++||+++++....
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 999999998888888899999999999988 799999999999999988754322
Q ss_pred -eeccCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------------eeeccCCCCCCeEEEEEe
Q 006126 452 -LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 452 -~~~~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~s 516 (660)
..+|...+.++.|+ |+++.+++++.|+++++||+.++.......... ....+ .......++
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 324 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGACPH 324 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCEEC
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEEEc
Confidence 23577888999987 799999999999999999998754322111000 00001 112223344
Q ss_pred c--CCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 517 P--DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 517 p--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
| ++.+++++ .|+.|++||+.+++....... |..+|.+++|+|||++||+++.+| +.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3 33344555 789999999999988777654 578999999999999999998776 556654
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.8e-26 Score=248.89 Aligned_cols=329 Identities=10% Similarity=0.062 Sum_probs=242.8
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEec--cCCcee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNKQS 346 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~--~~~~~~ 346 (660)
.++|++..+++++.|++|.+||..+ +++... ++. +|. +..++|+|||++|++++.|+.|.+||+ .+.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~-i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~- 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK- 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT----CCEEEE-EEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC----ceEEEE-Eec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-
Confidence 5789999999999999999999974 444332 321 133 899999999999999999999999998 44332
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCC----
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP---- 414 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~---- 414 (660)
+..+ .+...+..++|+ |+++++++ +++|.+||..++++++++..+
T Consensus 215 --------------------~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 215 --------------------VAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp --------------------EEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred --------------------EEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 2211 134457788886 56888877 799999999999999888642
Q ss_pred -------CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee--EeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q 006126 415 -------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCV 482 (660)
Q Consensus 415 -------~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~v 482 (660)
...+..+.++|++ .+++...++.|.+||..+++.+. .+. +...+.++.|+|+|+++++++ .+++|.+
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 2378899999988 77888889999999998876544 333 566788999999999876554 5899999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-CcEEEEE--ecCcEEEEeCCC-------CceeeeecCCCCCCC
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLP 552 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~ 552 (660)
||+.+++........ ...|. +....+ ++|+ +..++++ .|++|.+||+.+ .++++++.. |...
T Consensus 351 ~D~~tg~l~~~i~~g--~~ph~---g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~ 422 (543)
T 1nir_A 351 IDSKDRRLSALVDVG--KTPHP---GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGG 422 (543)
T ss_dssp EETTTTEEEEEEECS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSC
T ss_pred EECCCCeEEEeeccC--CCCCC---CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCC
Confidence 999997654332211 11232 233333 5787 5555555 479999999988 888899876 4667
Q ss_pred eEEEEEccCCCEEEEEe-------cCCeEEEEECCCCeeE-EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe--
Q 006126 553 ITYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-- 622 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~-------~dg~I~iwd~~~~~~~-~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-- 622 (660)
+..++|+|+|++|++++ .++.|.+||+.+++.. ..+........+ .+...+..+.|+| +|+.+.++.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~-~g~~~~~s~~~ 499 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG--EGAKRVVQPEYNK-RGDEVWFSVWN 499 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC--SSCCEEEEEEECS-SSSEEEEEEEC
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC--CCCCceEeccCCC-CCCEEEEEeec
Confidence 78899999999999987 3679999999999876 444321100000 1123455999999 899887652
Q ss_pred ---CCCeEEEEeCCCCceeccC
Q 006126 623 ---TNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 623 ---~Dg~v~iw~~~~~~~~w~~ 641 (660)
.|+.|.|||..+++.+-..
T Consensus 500 ~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 500 GKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCCeEEEEECCCceEEEee
Confidence 4799999999999885443
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1e-24 Score=231.08 Aligned_cols=289 Identities=11% Similarity=-0.025 Sum_probs=213.9
Q ss_pred EecCCCC-EEEEEe----CCC----cEEEEec--cCcCCCcceeeeecCCCCCCCCeEEEEEec--------------CC
Q 006126 269 TSLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH--------------SG 323 (660)
Q Consensus 269 ~~spdg~-~l~s~~----~dg----~i~iwd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp--------------dg 323 (660)
.|++.|. .+++|+ .|| ++++||+ .++ ..+....+.+ |...+..+++++ .+
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG---TVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT---CEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC---CEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 7778875 555776 467 8999999 642 2332333433 777888887775 26
Q ss_pred CEEEEEECC------CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C
Q 006126 324 DFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 394 (660)
Q Consensus 324 ~~l~s~s~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d 394 (660)
..++.++.+ +.|++||+..... .. +. +|...+.+++|+ |++|++++ +
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~---------------------~~-l~--~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQ---------------------FV-VH--RSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSC---------------------EE-EE--EESSCEEEEEECTTSSEEEEEECT
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCC---------------------EE-Ee--CCCCcceeeEEcCCCCEEEEEEec
Confidence 667776654 6888888754322 11 11 578889999999 88999998 6
Q ss_pred C---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE-EEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCC
Q 006126 395 G---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 467 (660)
Q Consensus 395 g---~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~-s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 467 (660)
+ .|++||+.+++.. .+..+...+.+++|+||| .|+ +++.++ .|++||+.+++. ..+..|...+.+++|+||
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence 4 9999999998875 466777889999999999 666 666665 499999998875 567778889999999999
Q ss_pred CCEEEEEeC-CC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec---CcEEEEeCCCCce
Q 006126 468 LNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNH 540 (660)
Q Consensus 468 ~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---~~i~iwd~~~~~~ 540 (660)
|++|++++. ++ .|++||+.+++. . ....+. ..+.+++|+|+|++|++ +.+ ..|++||+.+++.
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGAP------Q-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCC------E-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCcEEEEEECCCCCE------E-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 999998886 44 678889887542 1 112233 46889999999999998 443 5899999998876
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCC---eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126 541 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
. .+.. + ..+.+++|+|||++|++++.++ .|++||+..+. ...+. +| ...+. +++|+|.
T Consensus 348 ~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------~~-~~~v~--~~~~~~~ 408 (415)
T 2hqs_A 348 Q-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------AT-DGQVK--FPAWSPY 408 (415)
T ss_dssp E-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------CS-SSEEE--EEEECCC
T ss_pred E-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------CC-CCCCc--CCccccc
Confidence 4 3433 2 3899999999999999988876 89999998554 44554 22 34455 9999993
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.3e-24 Score=248.42 Aligned_cols=321 Identities=11% Similarity=0.088 Sum_probs=228.7
Q ss_pred eeeEecCCCCEEEEEeC-CC-----cEEEEeccCcCCCcceeeeecCCCCCC----------------------CCeEEE
Q 006126 266 RESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRL 317 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~l~~~~h~----------------------~~V~~~ 317 (660)
..+.|||||++|++++. |+ .|++||+.+ +....+ +..+++. ..|.++
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 34599999999999998 88 899999985 433332 2111122 348899
Q ss_pred EEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCC
Q 006126 318 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG 395 (660)
Q Consensus 318 ~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg 395 (660)
+|||||++|++++. +.|.+|++.++.. ....... .|...+.+++|+ |++|+.++++
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~------------------~~~~~l~---~~~~~~~~~~~SPDG~~la~~~~~ 172 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGK------------------AAVRQLT---HGEGFATDAKLSPKGGFVSFIRGR 172 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCST------------------TSCCBCC---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCc------------------ceEEEcc---cCCcccccccCCCCCCEEEEEeCC
Confidence 99999999999987 8888888765510 0111111 467789999999 8899999988
Q ss_pred cEEEEECCCCeEEEEEcCCCCC----------------eEEEEEcCCC-eEEEEeCCC----------------------
Q 006126 396 KISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS---------------------- 436 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~----------------v~~v~~sp~~-~l~s~~~d~---------------------- 436 (660)
.|++||+.+++..+....+... +.+++|+||| .|++++.|+
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 9999999998776654444332 4679999999 888887665
Q ss_pred -----------eEEEEeCCC-CceeeEee--ccCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCCCeeeeceeee
Q 006126 437 -----------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLH 497 (660)
Q Consensus 437 -----------~I~iwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~ 497 (660)
.|++||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++...
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~----- 326 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV----- 326 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE-----
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE-----
Confidence 899999998 87654443 37788999999 99999987764 5679999999865322
Q ss_pred eeeeccCCCCC---CeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEEE-EEccCCCEEEEE-ec
Q 006126 498 SFQTGLVPETT---IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYVS-CK 570 (660)
Q Consensus 498 ~~~~~~~~~~~---~v~~~~~sp~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~dg~~l~sg-~~ 570 (660)
+...+.. . .+.+++|+|||++++++ .++.++||.+. ++. ...+.. +...+..+ .|+|||+.|+.. +.
T Consensus 327 -~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 327 -LAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp -EEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECS
T ss_pred -EEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeC
Confidence 1222221 2 34689999999977775 67766777654 344 555544 46778787 599999987654 44
Q ss_pred CC--eEEEEECCC-CeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCce
Q 006126 571 SG--HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 637 (660)
Q Consensus 571 dg--~I~iwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~~ 637 (660)
++ .++||++.. +.....+.. ...+. .++|+| |+++|+....+ +.+.+|+...+..
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~~ 462 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK---------APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGEKI 462 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC---------SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSCEE
T ss_pred CCCceEEEEEEEcCCCCeeeccc---------CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCeE
Confidence 55 899999864 444444431 22344 899999 89888765443 5789999865543
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=2.2e-24 Score=255.50 Aligned_cols=331 Identities=12% Similarity=0.056 Sum_probs=238.5
Q ss_pred eeEecCCCCEEEEEeCC------CcEEEEeccCcCCCcceeeeecCCCCCCCCe-------EEEEEecCCCEEEEEECC-
Q 006126 267 ESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT- 332 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V-------~~~~~spdg~~l~s~s~d- 332 (660)
...|||||++||+++.+ ..|.+|+..+ +.... +.. |...+ ..++|||||+.+++++.+
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~----g~~~~--lt~--~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN----GEIKR--ITY--FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTT----TEEEE--CCC--CCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCC----CCeEE--ccc--CCCcccccccccccccCCCCCEEEEEECCcC
Confidence 35999999999988654 4789999874 44444 332 77778 999999999966776644
Q ss_pred -----CcEEEEeccCCceeeeeec----------------------------cceeEEEecC-CCCceeeecccCCCCCC
Q 006126 333 -----ATHKLWKWQSNKQSLEEEN----------------------------VNMESQLYQP-SSKLVMTNDIAADPKDS 378 (660)
Q Consensus 333 -----g~i~vw~~~~~~~~~~~~~----------------------------~~~~~~~~~~-~~~~~~~~~~~~~h~~~ 378 (660)
..+.+|++.++........ ......+|.. .++..... .+|...
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~ 205 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTH 205 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSC
T ss_pred CCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCc
Confidence 3577777766553321000 0111233321 12333322 279999
Q ss_pred eEEEEEe-CCEEEEEe-CCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec
Q 006126 379 ISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 454 (660)
Q Consensus 379 v~~v~~s-~~~l~s~~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~ 454 (660)
+.++.|+ +.++++++ ++.+.+|.+.. +.....+..+. .+...+|+||| .++++ .++.|++||+... .+..+.+
T Consensus 206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~ 282 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEI 282 (1045)
T ss_dssp CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCC
T ss_pred ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-Eeeeecc
Confidence 9999999 54444555 78889998753 44455555554 45677999999 78877 4899999999544 3435544
Q ss_pred -----------cCCCeEEEEEe-CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCC-CeEEEEEecCCcE
Q 006126 455 -----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIH 521 (660)
Q Consensus 455 -----------~~~~v~~l~~s-p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~ 521 (660)
|...+.+++|+ |||+++++++ ++.|.+|++.++... . ...|. . .+..++|+ ||+.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~--~~~~~---~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----K--VPEPL---RIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----E--CSCCS---CEEEEEECSS-SEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----E--ccCCC---cceEEeeeEc-CCCe
Confidence 34468999999 9999999888 889999999875421 1 22333 4 68899999 9999
Q ss_pred EEE-EecCcEE-EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 522 LLS-IHEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 522 l~~-~~d~~i~-iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
++. +.++.+. +||+.+++.. .+. .|...+..++|+|||++|++++.++.|++||+.+++...... +|
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-------~~- 419 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-------SR- 419 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CS-
T ss_pred EEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-------CC-
Confidence 988 4667788 8999876653 333 357889999999999999999999999999999998777664 22
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCC----------eEEEEeCCCCce
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESEV 637 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg----------~v~iw~~~~~~~ 637 (660)
...+. +++|+| ||++|++++.++ .|++||+.+++.
T Consensus 420 ~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 420 EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 33445 899999 899999887654 999999998763
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.6e-24 Score=229.50 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=204.6
Q ss_pred CCCeEEEEEecCCC-EEEEEE----CCC----cEEEEec--cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126 311 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 379 (660)
Q Consensus 311 ~~~V~~~~~spdg~-~l~s~s----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 379 (660)
...+...+|++.|. ++++|+ .|| .+++||+ .+++.... ..+. +|...+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~--------~~~~-------------~~~~~~ 120 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ--------NSYK-------------VNKQWL 120 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE--------EEEE-------------ECGGGH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee--------eEEE-------------cChhHH
Confidence 35677888988884 666776 467 8888888 66653211 0010 233333
Q ss_pred EEEEEe----------------CCEEEEEe-C------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC
Q 006126 380 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD 435 (660)
Q Consensus 380 ~~v~~s----------------~~~l~s~~-d------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d 435 (660)
..+++. +..++.++ + +.|++||+. +...+.+..|...+.+++|+||| .|++++.+
T Consensus 121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence 333222 45566555 4 699999997 45567777888999999999999 99999887
Q ss_pred C---eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCc--EEEEEcCCCeeeeceeeeeeeeccCCCCCC
Q 006126 436 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI 509 (660)
Q Consensus 436 ~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (660)
+ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.|+. |++||+.+++. . ....|. ..
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~ 268 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------R-QVTDGR---SN 268 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------E-ECCCCS---SC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------E-eCcCCC---Cc
Confidence 5 9999999998765 5667888999999999999888 5666655 99999988542 1 223444 57
Q ss_pred eEEEEEecCCcEEEE-Ee-cC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---CeEEEEECCCC
Q 006126 510 VNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 582 (660)
Q Consensus 510 v~~~~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d---g~I~iwd~~~~ 582 (660)
+.+++|+|||++|++ +. ++ .|++||+.+++.. .+.. +...+.+++|+|||++|++++.+ +.|++||+.++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 999999999999988 43 34 6888899877643 3332 36678899999999999988875 58999999998
Q ss_pred eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC---eEEEEeCCCCc
Q 006126 583 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE 636 (660)
Q Consensus 583 ~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg---~v~iw~~~~~~ 636 (660)
+... +. ++ . .+.+++|+| ||++|++++.|+ .|++|++..+.
T Consensus 346 ~~~~-l~-------~~-~---~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 346 GVQV-LS-------ST-F---LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEEE-CC-------CS-S---SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CEEE-ec-------CC-C---CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 7643 32 21 1 244899999 899999988877 79999997554
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=8.6e-23 Score=223.14 Aligned_cols=297 Identities=13% Similarity=0.108 Sum_probs=213.8
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEec--cCcCCCcceeeeecCCCCCCCCeEEEEEec----CCCEEEEEEC-CCcEEEEe
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLWK 339 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~~sp----dg~~l~s~s~-dg~i~vw~ 339 (660)
.+.|+|||+++++++.|++|++||+ .+ ..+.. +++ +...+.+++|+| ||+++++++. +++|.+||
T Consensus 183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t----~~~~~-~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 183 ISRMSASGRYLLVIGRDARIDMIDLWAKE----PTKVA-EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSS----CEEEE-EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred eEEECCCCCEEEEECCCCeEEEEECcCCC----CcEEE-EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 4589999999999999999999999 53 33322 232 456789999999 9999999985 89999999
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE-EEEEe-CCcEEEEECCCCeEEE--EEcC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TFAN 413 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~-l~s~~-dg~I~iwd~~~~~~~~--~~~~ 413 (660)
..+.+.... +.......-...+ .+...+..+.++ +.. +++.. ++.|.+||..+++.+. .+ .
T Consensus 255 ~~t~~~~~~----------i~~~g~~~~~~~~--~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~ 321 (543)
T 1nir_A 255 GETLEPKQI----------VSTRGMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-G 321 (543)
T ss_dssp TTTCCEEEE----------EECCEECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred cccccccee----------ecccCcccCcccc--ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence 877654211 1110000000000 123378899998 554 44555 7999999998866544 33 3
Q ss_pred CCCCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEeec----cCCCeEEEEEeCC-CCEEEEEe-CCCcEEEEEc
Q 006126 414 PPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVWDA 485 (660)
Q Consensus 414 ~~~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~-~~~l~s~s-~dg~i~vwd~ 485 (660)
+...+.++.|+|+| ++++ +..+++|.+||+.+++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 45667789999999 6654 45688999999999999888864 55444443 5787 55666665 5899999999
Q ss_pred CCCee--eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------cCcEEEEeCCCCcee-eeecC------CC
Q 006126 486 VGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQLVP------DK 548 (660)
Q Consensus 486 ~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------d~~i~iwd~~~~~~~-~~~~~------~~ 548 (660)
.+... .....++ ...+|. ..+..++++|+|++|+++. +++|.+||+.+++.. ..+.. ..
T Consensus 401 ~~~~~~~~~~~~v~-~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 401 DPKNHPQYAWKKVA-ELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp CTTTCTTTBTSEEE-EEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred CCCCCchhcCeEEE-EEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 87210 0012334 344554 4678899999999999953 679999999998876 44311 13
Q ss_pred CCCCeEEEEEccCCCEEEEEe-----cCCeEEEEECCCCeeEEEee
Q 006126 549 MDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 549 ~~~~v~~~~~s~dg~~l~sg~-----~dg~I~iwd~~~~~~~~~~~ 589 (660)
+...+..+.|+|+|+.++++. .|+.|.|||..+++++.+++
T Consensus 477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 477899999999999999764 37999999999999998887
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.3e-23 Score=239.36 Aligned_cols=322 Identities=13% Similarity=0.077 Sum_probs=218.0
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC---CeEEEEEecCCCEEEEEECC---------CcE
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------ATH 335 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~~spdg~~l~s~s~d---------g~i 335 (660)
+.|||||+++++ +.||+|++||..+ ++.... +.. |.. .|.+++|||||++|++++.+ +.+
T Consensus 22 ~~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~-~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 22 AKWISDTEFIYR-EQKGTVRLWNVET----NTSTVL-IEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEE-ECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cEEcCCCcEEEE-eCCCCEEEEECCC----CcEEEE-ecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 389999997776 7899999999985 444333 322 443 49999999999999999875 455
Q ss_pred EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEcC
Q 006126 336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN 413 (660)
Q Consensus 336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~~ 413 (660)
.+||+.++. ........+|...+..++|+ |++|+.++++.|++||+.+++..+....
T Consensus 94 ~~~d~~~~~---------------------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 94 VLSKIPHGD---------------------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEESSSCC---------------------CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECC
T ss_pred EEEECCCCc---------------------eEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecC
Confidence 566655443 21111112455568889999 8899999999999999999887776655
Q ss_pred CCCCe------------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEE
Q 006126 414 PPPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SILV 440 (660)
Q Consensus 414 ~~~~v------------------~~v~~sp~~-~l~s~~~d~----------------------------------~I~i 440 (660)
+...+ .+++|+||| .|++++.|+ .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 44333 789999999 888877543 7999
Q ss_pred EeCCCCceeeEeecc------CCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe
Q 006126 441 HCPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 510 (660)
Q Consensus 441 wd~~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 510 (660)
||+.+++....+..+ ...+..++|+|||+++++.+. +..|++||+.+++.... ....+. ..+
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~-----~~~~~~---~~~ 304 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK-----HEDESE---AWL 304 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE-----EEEECS---SCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE-----EEeccC---CEE
Confidence 999988765666544 567899999999998877653 35799999998653211 111222 233
Q ss_pred ----EEEEEecCCcEEEE--E-ecC------cEEEEe-CCCCce--eeeecCCCCCCCeEE-EEEccCCCEEEEEecC--
Q 006126 511 ----NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLNH--TSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-- 571 (660)
Q Consensus 511 ----~~~~~sp~~~~l~~--~-~d~------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~dg~~l~sg~~d-- 571 (660)
..++|+|||+.|+. + .++ .|++|| ...+.. ...+.. +...+.. ++|+|||+.|+..+.+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~ 382 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDL 382 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSC
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCC
Confidence 37899999997775 3 455 577888 444441 445543 1344554 6999999999876655
Q ss_pred -CeEEEEECCCCe--eEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCc
Q 006126 572 -GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLESE 636 (660)
Q Consensus 572 -g~I~iwd~~~~~--~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg--~v~iw~~~~~~ 636 (660)
+.++||++.... ....+... .+| ...+. .++|+| |+++++.... ++ ...+++..+++
T Consensus 383 ~~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 383 PRRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp TTCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred CcceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCCC
Confidence 789999986532 22222210 001 22344 899999 8888776533 22 33445554443
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.1e-22 Score=241.02 Aligned_cols=312 Identities=11% Similarity=-0.007 Sum_probs=233.9
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC---------CCCCeEEEEEe-cCCCEEEEEECCCcE
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---------FGGRVVRLIYS-HSGDFLVALTQTATH 335 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~---------h~~~V~~~~~s-pdg~~l~s~s~dg~i 335 (660)
....|||||++++++ .++.|.+|+.. ...+.. +.... |...+.+++|| |||++|++++ ++.+
T Consensus 248 ~~~~~SpDG~~la~~-~~~~i~~~d~~----~~~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i 319 (1045)
T 1k32_A 248 YPRHLNTDGRRILFS-KGGSIYIFNPD----TEKIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQA 319 (1045)
T ss_dssp CEEEEEESSSCEEEE-ETTEEEEECTT----TCCEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEE
T ss_pred ceeeEcCCCCEEEEE-eCCEEEEecCC----ceEeee--eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEE
Confidence 345999999999988 48999999984 333432 32211 34479999999 9999999888 7888
Q ss_pred EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC-CeEEEEEe-CCEEEEEe-CCcEE-EEECCCCeEEEEE
Q 006126 336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR-GSHLFSAS-GGKIS-IFSLETFQTLATF 411 (660)
Q Consensus 336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s-~~~l~s~~-dg~I~-iwd~~~~~~~~~~ 411 (660)
.+|+...+.. .... .|.. .+..++|+ |+.|++++ ++.+. +||+.+++... +
T Consensus 320 ~~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l 374 (1045)
T 1k32_A 320 FIQDVSGTYV---------------------LKVP---EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F 374 (1045)
T ss_dssp EEECTTSSBE---------------------EECS---CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred EEEcCCCCce---------------------EEcc---CCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-e
Confidence 8887655432 1111 4556 78889998 77888888 67888 89998776543 4
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC----------cE
Q 006126 412 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------QL 480 (660)
Q Consensus 412 ~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----------~i 480 (660)
..+...+..++|+||| .|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++ .|
T Consensus 375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 4777889999999999 999999999999999999988888878999999999999999999887654 89
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce-------e-----------
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-------T----------- 541 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~-------~----------- 541 (660)
++||+.+++. . ....|. ..+.+++|+|||++|++ +.++...+|+...... +
T Consensus 455 ~l~d~~~g~~------~-~l~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1045)
T 1k32_A 455 HVYDMEGRKI------F-AATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 524 (1045)
T ss_dssp EEEETTTTEE------E-ECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred EEEECCCCcE------E-EeeCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCC
Confidence 9999998541 1 123344 46888999999999988 5656666665432211 0
Q ss_pred -----------------------eeecCCCCCCCeEEEEEccCCCEEEE-------------EecCCeEEEEECCCCeeE
Q 006126 542 -----------------------SQLVPDKMDLPITYATYSCDGKCIYV-------------SCKSGHVKVFDTSTLELR 585 (660)
Q Consensus 542 -----------------------~~~~~~~~~~~v~~~~~s~dg~~l~s-------------g~~dg~I~iwd~~~~~~~ 585 (660)
.......+...+..++++|||+++++ ...+..|++||+.+++..
T Consensus 525 ~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~ 604 (1045)
T 1k32_A 525 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT 604 (1045)
T ss_dssp GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred ccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE
Confidence 00011124567889999999987875 122457899999998754
Q ss_pred EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.... . +..++|+| ||++|++++.| .|++||+.+++
T Consensus 605 ~l~~------------~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 605 EVKN------------N--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEE------------E--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred Eeec------------C--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 3321 1 33889999 89999999876 89999998876
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=3.3e-22 Score=205.43 Aligned_cols=278 Identities=13% Similarity=0.150 Sum_probs=190.2
Q ss_pred EEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC-CcEEEEecc--CCceeeeeecc
Q 006126 276 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQ--SNKQSLEEENV 352 (660)
Q Consensus 276 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d-g~i~vw~~~--~~~~~~~~~~~ 352 (660)
.+++++.|+.|++|++.. .+........ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++...
T Consensus 7 l~~~~~~~~~v~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH---EGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECT---TSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred EEEeCCCCCeEEEEEECC---CCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence 344447899999999963 2222221111 167789999999999999999886 999999986 33220
Q ss_pred ceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEECC---CCeEEEEEcCCCCCeEEEEEcC
Q 006126 353 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE---TFQTLATFANPPPIATYFILLP 425 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~---~~~~~~~~~~~~~~v~~v~~sp 425 (660)
.+.... .+ ..+..++|+ +++|++++ ++.|.+||+. +++....+..+ ..+.+++|+|
T Consensus 76 -------------~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 76 -------------FAAESA--LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp -------------EEEEEE--CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred -------------eccccc--cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 111110 12 267889999 77776666 6889999994 44455555433 4588899999
Q ss_pred CC-eEEEEe-CCCeEEEEeCCC-Cceee----Eeec-cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC--Ceeeece
Q 006126 426 QD-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSK 494 (660)
Q Consensus 426 ~~-~l~s~~-~d~~I~iwd~~~-~~~~~----~~~~-~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~--~~~~~~~ 494 (660)
++ .+++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+++++++++ .++.|.+||+.. ++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 99 777776 899999999987 65432 2232 345788999999999776555 789999999954 3321111
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC--C--CceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
.+.....++.. ...+..++|+|+|+++++ + .++.|.+||+. + .+.+..+.. ...+..++|+|+|++|+++
T Consensus 219 ~~~~~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 219 TLDMMPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEECSCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEE
T ss_pred eccccCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEe
Confidence 22211222110 135778999999998886 4 67899999998 2 334444433 2338899999999999888
Q ss_pred e-cCCeEEEE--ECCCCeeE
Q 006126 569 C-KSGHVKVF--DTSTLELR 585 (660)
Q Consensus 569 ~-~dg~I~iw--d~~~~~~~ 585 (660)
+ .++.|.+| |..+++..
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEE
T ss_pred cCCCCeEEEEEEcCCCceee
Confidence 7 57999999 55566543
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=1.2e-22 Score=230.84 Aligned_cols=319 Identities=13% Similarity=0.091 Sum_probs=217.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCC-cceeee-ec----CC-----CCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTL-LL----PD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKL 337 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~-~l----~~-----~~h~~~V~~~~~spdg~~l~s~s~dg~i~v 337 (660)
.|+ |..+++++.|+ | +||..++... ..+... .+ .. ..+...|.+++|||| ++++.+. ++.+.+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~ 105 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVG 105 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEE
Confidence 677 67777788888 8 9999863320 111110 00 00 001257999999999 6666554 589998
Q ss_pred EeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC-----CeEEEE
Q 006126 338 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----FQTLAT 410 (660)
Q Consensus 338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~-----~~~~~~ 410 (660)
||+.+++. .... .+...+.+++|+ |++|+++.++.|++||+.+ ++..+.
T Consensus 106 ~d~~~~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~ 161 (706)
T 2z3z_A 106 FDMLARKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAV 161 (706)
T ss_dssp EETTTTEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEES
T ss_pred EECCCCce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEe
Confidence 88766543 1111 355667788999 8899997799999999998 776654
Q ss_pred EcCCCCC--------------eEEEEEcCCC-eEEEEe---------------------------------CCCeEEEEe
Q 006126 411 FANPPPI--------------ATYFILLPQD-LFAFGF---------------------------------DDSSILVHC 442 (660)
Q Consensus 411 ~~~~~~~--------------v~~v~~sp~~-~l~s~~---------------------------------~d~~I~iwd 442 (660)
...+... +.++.|+||| .|++++ .+..|++||
T Consensus 162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 4433332 4789999999 888887 446899999
Q ss_pred CCCCceeeEee--ccCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126 443 PCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515 (660)
Q Consensus 443 ~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 515 (660)
+.+++...... .|...+.+++|+|||++|++++.++ .|++||+.+++... .+. ...+......+.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~--~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLF--VETDKHYVEPLHPLTF 317 (706)
T ss_dssp TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEE--EEECSSCCCCCSCCEE
T ss_pred CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEE--EccCCCeECccCCcee
Confidence 99887654442 4667899999999999999988775 89999999863211 111 1111100012467899
Q ss_pred ec--CCcEEEEE-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE-EEEccCCCEEEEEecC-C----eEEEEECCCCeeE
Q 006126 516 HP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-G----HVKVFDTSTLELR 585 (660)
Q Consensus 516 sp--~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~sg~~d-g----~I~iwd~~~~~~~ 585 (660)
+| ||++++++ .++.+++|++. ++..+..+.. +...+.. ++|+|||+.|+.++.+ + .|+.||+.+++..
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 395 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK 395 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce
Confidence 99 99988875 77888888775 5666666654 3666776 7999999988766554 4 6778888877632
Q ss_pred EEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCc
Q 006126 586 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 636 (660)
Q Consensus 586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~ 636 (660)
.+. + ...+. +++|+| |+++++..+.+ +.|++||+.+++
T Consensus 396 -~l~--------~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 396 -DLT--------P-ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -ESC--------C-SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -ecc--------C-CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 322 1 22344 899999 89988776443 569999998876
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.5e-21 Score=199.89 Aligned_cols=286 Identities=12% Similarity=0.048 Sum_probs=199.7
Q ss_pred EEEecCCCE-EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126 317 LIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 393 (660)
Q Consensus 317 ~~~spdg~~-l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~ 393 (660)
..|.+++++ +++.+.++.|.+||..+++. ..... .+...+ +++|+ ++++++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 346666665 56666789999988776654 11111 234445 89998 77666666
Q ss_pred --CCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCC-eEEEEeCCC---eEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126 394 --GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 394 --dg~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 466 (660)
++.|.+||+.+++. ...+..+.....+++|+|+| .++++..++ .|.+||+.+++.+..+.. .....+++|+|
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 68999999999987 77776666666559999999 777555553 899999999988887764 44578999999
Q ss_pred CCCEEEE-EeCCCc-EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce--
Q 006126 467 SLNVLVS-SGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-- 540 (660)
Q Consensus 467 ~~~~l~s-~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~-- 540 (660)
+|+++++ ...++. |.+|++............ ... .. ..+..++|+|+|+++++ + .++.|++||+.+++.
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~-~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FIS-GG---TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EEC-SS---SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCc-ccc-CC---CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 9986554 455688 999999864322111111 111 12 46889999999997776 4 578999999999888
Q ss_pred -eeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCee--EEEeecccccCCCCcCcccc-eEEEEEecCCC
Q 006126 541 -TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELY-PLVIAAHPLEP 615 (660)
Q Consensus 541 -~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~--~~~~~~~~~~~~gh~~~~v~-~~~v~~sp~d~ 615 (660)
+..+.. ...+..++|+|||+++++++ .++.|.+||+.+++. +..+...... . ..... ...++|+| |+
T Consensus 213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~sp-dg 284 (331)
T 3u4y_A 213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI--D--PRPLFGANQMALNK-TE 284 (331)
T ss_dssp EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC--C--CGGGTTCCCEEECT-TS
T ss_pred eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc--C--CCCcccccceEECC-CC
Confidence 766653 46678899999999877665 468899999999987 3333211000 0 11111 13689999 88
Q ss_pred CEEEEEe-CCCeEEEEeCCCCceecc
Q 006126 616 NRIALGL-TNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 616 ~~l~s~s-~Dg~v~iw~~~~~~~~w~ 640 (660)
++|++++ .++.|.+||+......+-
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CEEEEecCCCCcEEEEEecCCcccce
Confidence 8876555 567999999988766443
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.7e-21 Score=201.20 Aligned_cols=270 Identities=13% Similarity=0.083 Sum_probs=205.1
Q ss_pred CCCeEEEEEecCCCEEEEEECC-------CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQT-------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 383 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 383 (660)
...+..++|+|+|+++++++.+ +.|.+||..+++. +.... ....+..++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------~~~~~---~~~~~~~~~ 95 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------TQAIH---NDLKPFGAT 95 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------EEEEE---ESSCCCSEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------EEEEe---cCCCcceEE
Confidence 5678999999999999888754 4677776655443 22211 223356788
Q ss_pred Ee--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCC---------eEEEEEcCCC-eEEEEe--CCCeEEEEeCCCCc
Q 006126 384 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTKK 447 (660)
Q Consensus 384 ~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~---------v~~v~~sp~~-~l~s~~--~d~~I~iwd~~~~~ 447 (660)
|+ +++++.++ ++.|.+||..+++.+..+..+... +.+++|+|++ .+++++ .++.|.+||+.+++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 88 77666555 689999999999998888754322 6889999999 666555 57899999999999
Q ss_pred eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--
Q 006126 448 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 525 (660)
Q Consensus 448 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-- 525 (660)
.+..+..+...+.++.|+|+|+++++++.++.|.+||+.+++........ ..++. ..+..++|+|+|++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITDS 250 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEES
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEeC
Confidence 88888766667889999999999999999999999999997654332221 11222 467889999999988774
Q ss_pred ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccc
Q 006126 526 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 604 (660)
Q Consensus 526 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 604 (660)
.++.|.+||..+++.+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+... . .
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---------~--~ 315 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP---------T--H 315 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC---------S--E
T ss_pred CCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC---------C--C
Confidence 45899999999999888876532 25699999999776665 6899999999999988877531 1 2
Q ss_pred eEEEEEecCCCCEEEEEeCCC
Q 006126 605 PLVIAAHPLEPNRIALGLTNG 625 (660)
Q Consensus 605 ~~~v~~sp~d~~~l~s~s~Dg 625 (660)
+.+++|+| |+++++.+..++
T Consensus 316 ~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 316 PNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECT-TSCEEEEEEECC
T ss_pred CCeEEEcC-CCCEEEEEEccc
Confidence 44899999 888776666553
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.1e-22 Score=230.13 Aligned_cols=301 Identities=10% Similarity=0.065 Sum_probs=206.7
Q ss_pred CCCeEEEEEecCCCEEEEEEC-CC-----cEEEEeccCCceeeeeeccceeE--EEecCCCCceeeecccCCCCCCeEEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLEEENVNMES--QLYQPSSKLVMTNDIAADPKDSISCF 382 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~-dg-----~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~v 382 (660)
...|.+++|||||++|++++. |+ .|.+||+.+++...........+ ..+...... .+..........+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKA-RRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhh-hhhhhhhccccCccee
Confidence 567999999999999999998 88 89999988775422200000000 000000000 0000000001347788
Q ss_pred EEe--CCEEEEEeCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126 383 ALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 383 ~~s--~~~l~s~~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~ 457 (660)
+|+ |++|++++++.|.+||+.++. ....+..+...+.+++|+||| .|++++ ++.|++||+.+++.......+..
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 999 889999999999999999873 344566777889999999999 888887 56999999998876655444433
Q ss_pred C----------------eEEEEEeCCCCEEEEEeCCC---------------------------------cEEEEEcCC-
Q 006126 458 R----------------ITCLAYSLSLNVLVSSGADA---------------------------------QLCVWDAVG- 487 (660)
Q Consensus 458 ~----------------v~~l~~sp~~~~l~s~s~dg---------------------------------~i~vwd~~~- 487 (660)
. +.++.|+|||++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47799999999999988765 788999987
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-----cCcEEEEeCCCCceeeeecCCCCCC---CeEEEEE
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDL---PITYATY 558 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~ 558 (660)
++... +. ....|. ..+..++| |||++|++ +. +..|++||+.+++....+... ... .+..++|
T Consensus 274 ~~~~~---~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 274 AQTQW---ID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTWVPLHNSLRF 344 (741)
T ss_dssp CCCEE---EC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSCCCCCSCCEE
T ss_pred CceEE---ec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCcCCcCCceEE
Confidence 65321 11 111344 57899999 99999997 33 467999999999876665432 122 4568899
Q ss_pred ccCCCEEEEEecCCeEEEEECC-CCeeEEEeecccccCCCCcCcccceEEE-EEecCCCCEEE-EEeCCC--eEEEEeCC
Q 006126 559 SCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG--RVHVIEPL 633 (660)
Q Consensus 559 s~dg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~d~~~l~-s~s~Dg--~v~iw~~~ 633 (660)
+|||+++++++.||.++||.+. +++ ...+. ++ ...+. .+ .|+| +++.|+ +++.|+ .++||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-------~~-~~~v~--~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALT-------HG-NWSVD--ELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESC-------CS-SSCEE--EEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeee-------ec-ceEEE--eEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999988887765 344 44443 22 22233 65 6999 788765 455555 89999986
Q ss_pred C
Q 006126 634 E 634 (660)
Q Consensus 634 ~ 634 (660)
.
T Consensus 413 ~ 413 (741)
T 2ecf_A 413 L 413 (741)
T ss_dssp T
T ss_pred c
Confidence 4
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=4.8e-22 Score=203.72 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=200.2
Q ss_pred CEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC-CeEEEEEe--CCEEEEEe--CCcEE
Q 006126 324 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFSAS--GGKIS 398 (660)
Q Consensus 324 ~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~s--~~~l~s~~--dg~I~ 398 (660)
+++++++.++.|.+||..+++. +..... ++.. .+..++|+ +++++.++ ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 4789999999999998776643 111110 1222 46788998 66665554 68999
Q ss_pred EEECCCCeEEEEEcCCC-----CCeEEEEEcCCC-eEEEEe------------CCCeEEEEeCCCCceeeEeeccCCCeE
Q 006126 399 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 460 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~~-----~~v~~v~~sp~~-~l~s~~------------~d~~I~iwd~~~~~~~~~~~~~~~~v~ 460 (660)
+||+.+++.+..+.... ..+.+++|+|+| .+++++ .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999887776321 256689999999 887775 579999999999888877764 45678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecC----------
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG---------- 528 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~---------- 528 (660)
+++|+|+|++++++ ++.|.+||+.+++.... +..+.. ...+.|+|+++.+++ + .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~-----~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLVED-----KPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEEEE-----ECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEeee-----eecccc-----CCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 68999999998654322 111211 112378899887765 2 222
Q ss_pred -------------cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126 529 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 595 (660)
Q Consensus 529 -------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 595 (660)
.|.+||+.+++.. .+....+...+.+++|+|||++++++ ++.|++||+.+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----- 278 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----- 278 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence 4799999988875 33333346678899999999999988 79999999999988877653
Q ss_pred CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126 596 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~ 643 (660)
...+. +++|+| ++++|++++.|+.|++||+.+++.......
T Consensus 279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 12234 899999 899999999999999999999887554433
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=4.6e-21 Score=196.32 Aligned_cols=278 Identities=9% Similarity=0.032 Sum_probs=190.8
Q ss_pred EecCCCCE-EEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCcee
Q 006126 269 TSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 346 (660)
Q Consensus 269 ~~spdg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~ 346 (660)
.|.+++++ +++++.++.|.+||..+ ++.... +.. +...+ +++|+|+|+++++++. ++.|.+||..++...
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----LEILNQ-ITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----CCEEEE-EEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----cceeee-EEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 45566655 67778889999999984 444332 211 45566 9999999998877776 789988887665420
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCC----cEEEEECCCCeEEEEEcCCCCCeEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG----KISIFSLETFQTLATFANPPPIATY 420 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg----~I~iwd~~~~~~~~~~~~~~~~v~~ 420 (660)
..... .+..+..+++|+ +++++++.++ .|.+||+.+++.+..+..+ ....+
T Consensus 76 --------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 132 (331)
T 3u4y_A 76 --------------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVG 132 (331)
T ss_dssp --------------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEE
T ss_pred --------------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccc
Confidence 11111 244444458898 7888855533 8999999999988887654 44689
Q ss_pred EEEcCCC-eEE-EEeCCCe-EEEEeCCCCcee----eEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeee
Q 006126 421 FILLPQD-LFA-FGFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 421 v~~sp~~-~l~-s~~~d~~-I~iwd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~ 492 (660)
++|+|+| .++ ++..++. |.+|++.....+ .........+.+++|+|+|++++++ ..++.|.+||+.+++..
T Consensus 133 ~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~- 211 (331)
T 3u4y_A 133 IAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI- 211 (331)
T ss_dssp EEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-
T ss_pred eEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-
Confidence 9999999 554 4456678 999998764332 1222345568999999999966555 46899999999986541
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCce--eeeecCC--CCC---CCeEEEEEccCCC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGK 563 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~--~~~---~~v~~~~~s~dg~ 563 (660)
..+..+..+ ..+..++|+|||++++++ .++.|.+||+.+++. +..+... .+. .....++|+|||+
T Consensus 212 -~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 285 (331)
T 3u4y_A 212 -TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET 285 (331)
T ss_dssp -EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS
T ss_pred -ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC
Confidence 112212222 467789999999988774 578899999998877 3333221 011 2235689999999
Q ss_pred EEEEEec-CCeEEEEECCCCee
Q 006126 564 CIYVSCK-SGHVKVFDTSTLEL 584 (660)
Q Consensus 564 ~l~sg~~-dg~I~iwd~~~~~~ 584 (660)
+|++++. ++.|.+||+.....
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEecCCCCcEEEEEecCCcc
Confidence 8876655 57999999987653
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=3.3e-21 Score=197.48 Aligned_cols=275 Identities=12% Similarity=0.078 Sum_probs=201.8
Q ss_pred CEEEEEeCCCcEEEEeccCcCCCcce-eeeecCCCCCCC-CeEEEEEecCCCEEEEE-ECCCcEEEEeccCCceeeeeec
Q 006126 275 DSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGG-RVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEEN 351 (660)
Q Consensus 275 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~-~V~~~~~spdg~~l~s~-s~dg~i~vw~~~~~~~~~~~~~ 351 (660)
+++++++.++.|.+||..+ .+. ..+.+. +.. .+.+++|+|+|++++.+ +.++.|.+||..+++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~--- 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----MAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR--- 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----TEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE---
T ss_pred cEEEEcCCCCeEEEEECCC----CcEEEEEEcC---CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee---
Confidence 4788999999999999974 333 333221 222 58899999999876554 4578999998876653111
Q ss_pred cceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEECCCCeEEEEEcCCCC
Q 006126 352 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPP 416 (660)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-------------dg~I~iwd~~~~~~~~~~~~~~~ 416 (660)
+...... .|...+.+++|+ ++++++++ ++.|.+||+.+++....+.. ..
T Consensus 72 -------~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 72 -------IDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp -------EECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred -------EEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 1100000 012245678898 77888774 58999999999988887764 44
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-----------------
Q 006126 417 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------------- 478 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----------------- 478 (660)
.+.+++|+|+| .++++ ++.|++||+.+++....+..+.. ...+.|+|+++.++..+.++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 57788999999 77777 68899999999988877765431 11236899998766544332
Q ss_pred -------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCC
Q 006126 479 -------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 551 (660)
Q Consensus 479 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 551 (660)
.|.+||+.+++.. . +. ...+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+.. ..
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~-~--~~--~~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~ 280 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA-M--RE--VRIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PH 280 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE-E--EE--EEECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SS
T ss_pred cccccccceEEEeCCCCCce-E--ee--cCCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CC
Confidence 4689999987643 1 11 22333 468899999999999888 89999999999988877754 45
Q ss_pred CeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 552 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 281 ~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 678999999999999999999999999999998888764
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.3e-20 Score=194.64 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=200.1
Q ss_pred eeEecCCCCEEEEEeC-------CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC-CCcEEEE
Q 006126 267 ESTSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLW 338 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~-dg~i~vw 338 (660)
.+.++|||+++++++. ++.|.+||..+ ......+. +...+..++|+|+|++++.++. ++.|.+|
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIH-----NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEE-----ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEe-----cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3589999999988874 56899999985 22233332 2445788999999997666555 7899999
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcC
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFAN 413 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~ 413 (660)
|..+++... .+....+.... ......+.+++|+ ++++++++ ++.|.+||+.+++....+..
T Consensus 117 d~~~~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~ 182 (353)
T 3vgz_A 117 DAKTGEVKG----------RLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN 182 (353)
T ss_dssp ETTTCCEEE----------EEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred eCCCCeeEE----------EEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence 887665411 11110000000 0011236889998 77666655 68899999999999988876
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeec----cCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 006126 414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG 487 (660)
Q Consensus 414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~ 487 (660)
+...+.+++|+|+| .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|+++++++. ++.|.+||+.+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 66668899999999 899999999999999999988877764 4567889999999998777665 48999999998
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
++...... .+ ....++|+|+|+++++ + .++.|.+||..+++.+..+.. ...+.+++|+|||++|
T Consensus 263 ~~~~~~~~-----~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 263 GNILAKVA-----AP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTL 328 (353)
T ss_dssp CCEEEEEE-----CS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEE
T ss_pred CcEEEEEE-----cC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEE
Confidence 65433222 11 2246999999997776 4 579999999999998888754 4578999999999988
Q ss_pred EEEecCC
Q 006126 566 YVSCKSG 572 (660)
Q Consensus 566 ~sg~~dg 572 (660)
+++..++
T Consensus 329 ~v~~~~~ 335 (353)
T 3vgz_A 329 YVSVKQK 335 (353)
T ss_dssp EEEEECC
T ss_pred EEEEccc
Confidence 8777664
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=6.2e-21 Score=195.92 Aligned_cols=271 Identities=12% Similarity=0.082 Sum_probs=184.6
Q ss_pred CEEEEE-ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-CcEE
Q 006126 324 DFLVAL-TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKIS 398 (660)
Q Consensus 324 ~~l~s~-s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d-g~I~ 398 (660)
++++++ +.|+.|.+|++...... ..+... .+...+.+++|+ +++|++++ + +.|.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGAL------------------TLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCE------------------EEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcE------------------EEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEE
Confidence 344444 67999999998532110 011111 366678889999 78888888 5 8999
Q ss_pred EEECC--CCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC---CCceeeEeeccCCCeEEEEEeCCCC
Q 006126 399 IFSLE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 399 iwd~~--~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
+|++. +++ .+..+..+. .+.+++|+|++ .+++++ .++.|.+||+. +++.+..+.. ...+.+++|+|+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 64 AYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNR 141 (343)
T ss_dssp EEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSS
T ss_pred EEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCC
Confidence 99997 555 334454444 77899999999 666655 58899999994 3444555543 34588999999999
Q ss_pred EEEEEe-CCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce--e
Q 006126 470 VLVSSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--T 541 (660)
Q Consensus 470 ~l~s~s-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~ 541 (660)
++++++ .++.|.+||+.+ ++........ ...... ..+..++|+|+++++++ + .++.|.+||+.. ++. .
T Consensus 142 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVSDDGHLVAQDPAE-VTTVEG---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-EECSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred EEEEecCCCCEEEEEEecCCCceeeecccc-cccCCC---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 888877 899999999987 5432111001 111111 46889999999998876 4 678999999953 432 2
Q ss_pred eeec---CC-CCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECC--CC--eeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 542 SQLV---PD-KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTS--TL--ELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 542 ~~~~---~~-~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~--~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
..+. .. .....+..++|+|+|++|+++. .++.|++||+. ++ +.+..+.. + .. +.+++|+|
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------~--~~---~~~~~~s~ 286 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT------E--TQ---PRGFNVDH 286 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------S--SS---CCCEEECT
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC------C--Cc---cceEEECC
Confidence 2221 11 1134677899999999887544 78999999998 33 33333331 1 22 33899999
Q ss_pred CCCCEEEEEe-CCCeEEEEeCC
Q 006126 613 LEPNRIALGL-TNGRVHVIEPL 633 (660)
Q Consensus 613 ~d~~~l~s~s-~Dg~v~iw~~~ 633 (660)
++++|++++ .|+.|.+|++.
T Consensus 287 -dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 287 -SGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp -TSSEEEEECTTTCEEEEEEEE
T ss_pred -CCCEEEEecCCCCeEEEEEEc
Confidence 899888877 68999999554
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.5e-21 Score=222.45 Aligned_cols=284 Identities=13% Similarity=0.107 Sum_probs=196.5
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCC---CeEEEEEe--C
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G 386 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s--~ 386 (660)
..+.+++|+|||+++++ +.||+|++||..+++... +.+ +|.. .|.+++|+ |
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~----------~~~-------------~~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV----------LIE-------------GKKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE----------EEC-------------TTTTTTTTCSEEEECTTS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE----------Eec-------------cccccccccceEEECCCC
Confidence 45778999999997766 789999999887665311 111 3333 48999999 8
Q ss_pred CEEEEEe-C---------CcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 387 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 387 ~~l~s~~-d---------g~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
++|++++ + +.|.+||+.+++. +.+. .+...+..++|+||| .|++++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 8999887 3 6788999998876 3343 344458899999999 8888876 79999999998877665
Q ss_pred eccCCCe------------------EEEEEeCCCCEEEEEeCCC----------------------------------cE
Q 006126 453 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL 480 (660)
Q Consensus 453 ~~~~~~v------------------~~l~~sp~~~~l~s~s~dg----------------------------------~i 480 (660)
..+...+ .++.|+|||+.|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999987553 79
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e----cCcEEEEeCCCCceeeeecCCCCCCCe--
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQLVPDKMDLPI-- 553 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~v-- 553 (660)
++||+.+++.............+. ..+.+++|+|||+++++. . +..|++||+.+++....+... +...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~ 306 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHR 306 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEec
Confidence 999998865211110000011122 478899999999988763 2 357999999998876655332 23333
Q ss_pred --EEEEEccCCCEEEE--EecCC------eEEEEE-CCCCee--EEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 554 --TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 554 --~~~~~s~dg~~l~s--g~~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
..++|+|||+.|+. +..++ .|++|| ..+++. ...+.. | ...+. ..++|+| |++.|+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~--~~~~~-~~~~~sp-dg~~l~~ 376 (723)
T 1xfd_A 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------G--DWDVT-KILAYDE-KGNKIYF 376 (723)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------S--SSCEE-EEEEEET-TTTEEEE
T ss_pred cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------C--CeEEE-eeeEEcC-CCCEEEE
Confidence 37899999997775 44566 577777 444441 222221 2 11121 1369999 8999876
Q ss_pred EeCC---CeEEEEeCCCC
Q 006126 621 GLTN---GRVHVIEPLES 635 (660)
Q Consensus 621 ~s~D---g~v~iw~~~~~ 635 (660)
.+.+ +.++||++...
T Consensus 377 ~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EESSSCTTCCEEEEECSS
T ss_pred EEcCCCCcceEEEEEeCC
Confidence 6655 78999998653
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=5.5e-20 Score=189.79 Aligned_cols=273 Identities=13% Similarity=0.052 Sum_probs=175.3
Q ss_pred CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEeccCCceeeeeeccceeEEEe
Q 006126 283 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLY 359 (660)
Q Consensus 283 dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 359 (660)
++.|.+|++... ++.+..+.... +...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 15 ~~~i~v~~~d~~--tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTT--AKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------- 75 (347)
T ss_dssp CCEEEEEEEETT--TTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------
T ss_pred CCCEEEEEEcCC--CCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------
Confidence 466888887631 24443322222 456788899999999 665554 46777777533321
Q ss_pred cCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCe
Q 006126 360 QPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF-DDSS 437 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~ 437 (660)
+.+..+..+...+..++|+|+| .|++++ .++.
T Consensus 76 ----------------------------------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 76 ----------------------------------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGT 109 (347)
T ss_dssp ----------------------------------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTE
T ss_pred ----------------------------------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCE
Confidence 1112222334556689999999 777777 7889
Q ss_pred EEEEeCCC-Cc--eeeEeec---------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCeeeeceeeeeeeeccC
Q 006126 438 ILVHCPCT-KK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLV 504 (660)
Q Consensus 438 I~iwd~~~-~~--~~~~~~~---------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~ 504 (660)
|.+|++.. +. .+..+.. +...+.+++|+|+|+.+++...++.|.+||+. +++....... .....
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~---~~~~g 186 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL---TMEAG 186 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE---ECCTT
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE---EcCCC
Confidence 99999863 32 2333321 12348899999999966666678899999998 4432211111 11111
Q ss_pred CCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC--Cce--eeeecCCCC----CCCeEEEEEccCCCEEEE-EecCCe
Q 006126 505 PETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIYV-SCKSGH 573 (660)
Q Consensus 505 ~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~~~~~----~~~v~~~~~s~dg~~l~s-g~~dg~ 573 (660)
..+..++|+|||+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|++ +..++.
T Consensus 187 ---~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 187 ---FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp ---CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred ---CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 36788999999998777 4 678999999874 443 222221111 145888999999998854 555899
Q ss_pred EEEEECCC-C--eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC-CeEEEE--eCCCCce
Q 006126 574 VKVFDTST-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVI--EPLESEV 637 (660)
Q Consensus 574 I~iwd~~~-~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-g~v~iw--~~~~~~~ 637 (660)
|.+|++.. + +.+..+..+ ... +..++|+| |+++|++++.+ +.|.+| |..+++.
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~--------~~~--~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTE--------GDF--PRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECS--------SSC--CCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEECCCCcEEEeEEEecC--------CCC--cCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 99999973 2 333333311 222 33899999 89988887754 899999 5555554
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.3e-20 Score=188.80 Aligned_cols=252 Identities=9% Similarity=-0.029 Sum_probs=180.5
Q ss_pred EeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC-CceeeeeeccceeEEE
Q 006126 280 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQL 358 (660)
Q Consensus 280 ~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~-~~~~~~~~~~~~~~~~ 358 (660)
++.|++|++||+.+ +....+. . |...|.+++|+|+|++|++++ ++.|.+|++.+ +..
T Consensus 18 ~~~~~~i~~~d~~~----~~~~~~~--~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~------------- 75 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT----RKMRVVW--Q--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP------------- 75 (297)
T ss_dssp CCCCEEEEEEETTT----TEEEEEE--E--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-------------
T ss_pred CCcceeEEEEeCCC----Cceeeec--c--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-------------
Confidence 45789999999974 4444332 1 788999999999999999987 78999998776 433
Q ss_pred ecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C--C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEE
Q 006126 359 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 430 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d--g--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~ 430 (660)
... ....+...+.+++|+ +++|++++ + + .|..|+..+++ ...+..+. .+.+++|+|++ .|+
T Consensus 76 --------~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 76 --------EKV-DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFT 144 (297)
T ss_dssp --------EEC-CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEE
T ss_pred --------eEe-ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEE
Confidence 111 111234678889999 88888887 3 3 45555555554 34444333 48899999999 655
Q ss_pred -EEeCCCeEEEEeCCC-CceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 431 -FGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 431 -s~~~d~~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
+++.++.+.+|++.. +.....+..+...+.++.|+|+|+++++++ .++.+++|++.... ..+. ....+.
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~-~~~~~~--- 216 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVE-RITDSA--- 216 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEE-ECCCCS---
T ss_pred EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcE-EEecCC---
Confidence 788899999998532 233456666888999999999999888766 58999999986311 1122 222333
Q ss_pred CCeEEEEEecCCcEEEE-Eec-----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126 508 TIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
..+.+++|+|+|++|++ +.+ +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 47889999999999988 444 569999998877644333223577889999999999999887764
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=7.8e-21 Score=190.35 Aligned_cols=252 Identities=11% Similarity=0.008 Sum_probs=182.8
Q ss_pred EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCC-C
Q 006126 329 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-F 405 (660)
Q Consensus 329 ~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~-~ 405 (660)
++.|+.|.+||+.+++. .... .|...|.+++|+ +++|++++++.|.+||+.+ +
T Consensus 18 ~~~~~~i~~~d~~~~~~---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM---------------------RVVW---QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP 73 (297)
T ss_dssp CCCCEEEEEEETTTTEE---------------------EEEE---EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC
T ss_pred CCcceeEEEEeCCCCce---------------------eeec---cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC
Confidence 34577888887765543 2111 477889999999 8899998899999999999 8
Q ss_pred eEEEEEcCC-CCCeEEEEEcCCC-eEEEEeC--C--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCC
Q 006126 406 QTLATFANP-PPIATYFILLPQD-LFAFGFD--D--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADA 478 (660)
Q Consensus 406 ~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~--d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg 478 (660)
+.......+ ...+.+++|+|++ .|++++. + ..|..|++.+++ ...+..+ ..+..++|+|+++.++ +++.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 74 SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence 777666555 3678899999999 8888883 3 355555656554 3444433 3489999999999887 677899
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCC-CCceeeeecCCCCCCCeEE
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY 555 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~ 555 (660)
.+++|++.... .... ....+. ..+.+++|+|+|+++++ + .++.+++|++. .+..+..+.. +...+..
T Consensus 152 ~~~l~~~~~~~----~~~~-~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~ 221 (297)
T 2ojh_A 152 VFDIYSMDIDS----GVET-RLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWF 221 (297)
T ss_dssp EEEEEEEETTT----CCEE-ECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEE
T ss_pred ceEEEEEECCC----Ccce-EcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCC
Confidence 99999864321 1111 122333 57999999999998887 4 47889999876 4555555543 4677889
Q ss_pred EEEccCCCEEEEEecC-----------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC
Q 006126 556 ATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D 624 (660)
++|+|+|++|++++.+ +.|++||+.+++........ +| ...+. +++|+| ++++|++++.|
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GG-QGTMN--SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ES-TTTSC--SCCBCT-TSSEEEEEEEC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CC-Ccccc--cceECC-CCCEEEEEEec
Confidence 9999999999988776 56999999988765444321 22 33344 799999 89998888766
Q ss_pred C
Q 006126 625 G 625 (660)
Q Consensus 625 g 625 (660)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.4e-19 Score=184.08 Aligned_cols=286 Identities=12% Similarity=0.087 Sum_probs=187.8
Q ss_pred cCCCCEEEEEeC----CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC----CcEEEEeccC
Q 006126 271 LPDADSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 342 (660)
Q Consensus 271 spdg~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d----g~i~vw~~~~ 342 (660)
.+...+++.|+. ++.|.+|++... ++.+...... |...+..++|+|||++|++++.+ +.+.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 344456666643 568999988531 2334333221 46778889999999999999886 7999998765
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe--CCcEEEEECCCCeEEEEE------cC-
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLATF------AN- 413 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~--dg~I~iwd~~~~~~~~~~------~~- 413 (660)
.. +.+........+......+++.+++|++++ ++.|.+|++.....+..+ .+
T Consensus 85 ~~-------------------g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 85 EK-------------------GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp TT-------------------TEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred CC-------------------CcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 31 111100000023445666666777777776 689999999754322111 11
Q ss_pred -------CCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCce------e-------eEeeccCCCeEEEEEeCCCCEE
Q 006126 414 -------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT------K-------AKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 414 -------~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~------~-------~~~~~~~~~v~~l~~sp~~~~l 471 (660)
+...+.+++|+|+| .+++++ .++.|.+|++..... + .....+...+..++|+|+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 12345789999999 565544 588999998875431 1 1122345567899999999988
Q ss_pred EEEe-CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee--cCcEEEEeCC--CCc--eeee
Q 006126 472 VSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH--EGQIDVYEAP--TLN--HTSQ 543 (660)
Q Consensus 472 ~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~--d~~i~iwd~~--~~~--~~~~ 543 (660)
++++ .++.|.+||+.++.......+. ....+. .....++|+|||++|++ .. ++.|.+|++. +++ .+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 7777 6899999999876542222222 111222 35689999999999977 43 5789999985 444 3333
Q ss_pred ecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEE--ECCCCeeEEE
Q 006126 544 LVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVF--DTSTLELRCQ 587 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iw--d~~~~~~~~~ 587 (660)
+.. ...+.+++|+|||++|++++ .++.|.+| |..++++...
T Consensus 302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 332 45678999999999998887 56899996 5557765543
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=213.97 Aligned_cols=322 Identities=11% Similarity=0.066 Sum_probs=213.8
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC---CeEEEEEecCCCEEEEEEC---------CCcE
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TATH 335 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~~spdg~~l~s~s~---------dg~i 335 (660)
..|+|||+++++ +.|++|++||..+ +....+ +.. |.. .|.+++|||||++|++++. ++.|
T Consensus 21 ~~~s~dg~~~~~-~~d~~i~~~~~~~----g~~~~~-~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 21 PNWISGQEYLHQ-SADNNIVLYNIET----GQSYTI-LSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CEESSSSEEEEE-CTTSCEEEEESSS----CCEEEE-ECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cEECCCCeEEEE-cCCCCEEEEEcCC----CcEEEE-Ecc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence 399999965554 4699999999985 444443 211 222 4899999999999999876 5777
Q ss_pred EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEEc-
Q 006126 336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA- 412 (660)
Q Consensus 336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~~- 412 (660)
++||+.+++ .+... .....+..++|+ |+.|+.+.++.|++||+.+++..+...
T Consensus 93 ~~~d~~~g~---------------------~~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 93 YIYDLSNGE---------------------FVRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEETTTTE---------------------ECCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC
T ss_pred EEEECCCCc---------------------cccce---ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC
Confidence 777765553 21000 112457889999 889999999999999999887654332
Q ss_pred CCCCCe-----------------EEEEEcCCC-eEEEEeCCC----------------------------------eEEE
Q 006126 413 NPPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SILV 440 (660)
Q Consensus 413 ~~~~~v-----------------~~v~~sp~~-~l~s~~~d~----------------------------------~I~i 440 (660)
++...+ .+++|+||| .|++++.|. .|++
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 222222 489999999 888877552 7899
Q ss_pred EeCCCCcee--------eEeeccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEE----cCCCeeeeceeeeeeeeccC
Q 006126 441 HCPCTKKTK--------AKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWD----AVGWKKLCSKFLHSFQTGLV 504 (660)
Q Consensus 441 wd~~~~~~~--------~~~~~~~~~v~~l~~sp~~~~l~s~s~d----g~i~vwd----~~~~~~~~~~~~~~~~~~~~ 504 (660)
||+.+++.. ..+.+|...+..++|+||++++++.... ..|.+|| ..+++.... +.....+|.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~ 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT--QEHIEESRT 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG--GEEEEECSS
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE--EecccccCC
Confidence 999988753 2234578889999999998777664432 2488899 777543211 100013444
Q ss_pred CCCCCeE-----EEEEecCCcEEEE--E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC---
Q 006126 505 PETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--- 571 (660)
Q Consensus 505 ~~~~~v~-----~~~~sp~~~~l~~--~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--- 571 (660)
..+. .+.|+|||+.++. + .++ .|++||+.+++ ...+.. +...+..+.++ +++.|+..+.+
T Consensus 307 ---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 307 ---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp ---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEEEecCCC
Confidence 4555 7899999997654 3 333 68888987766 344433 35567888877 88888776655
Q ss_pred --CeEEEEECCC--Cee-EEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEeCC--CeEEEEeCCCCce
Q 006126 572 --GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV 637 (660)
Q Consensus 572 --g~I~iwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s~D--g~v~iw~~~~~~~ 637 (660)
+.+++|.+.. +.. ...+... ..+| ...+. .+.|+| ++++++ +++.+ ..+.+|++.+++.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~~--~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQYY--TASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCBE--EEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCceEEEEEEeCCCCCCCceeccCc---cCCC-CCceE--EEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 7788887754 421 2222210 0112 22233 789999 677666 44443 5789999988764
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=1.3e-19 Score=205.92 Aligned_cols=285 Identities=13% Similarity=0.040 Sum_probs=197.6
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccC---
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS--- 342 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~--- 342 (660)
..+.|||| +.++.+. ++.+++||+.+ +....+. . +...+.+++|||||++|+++ .|+.|.+|++.+
T Consensus 85 ~~~~~spd-~~~~~~~-~~~i~~~d~~~----~~~~~l~--~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLFT-QGGLVGFDMLA----RKVTYLF--D--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp EEEEETTT-TEEEEEE-TTEEEEEETTT----TEEEEEE--C--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred eeEEECCC-CeEEEEE-CCEEEEEECCC----CceEEcc--C--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 34589999 6666553 59999999974 5554432 1 56778999999999999985 679999999877
Q ss_pred --CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C-----------------------
Q 006126 343 --NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----------------------- 394 (660)
Q Consensus 343 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d----------------------- 394 (660)
++........... ..+... ..+.+...+.+++|+ |++|++++ |
T Consensus 154 ~~g~~~~~~~~~~~~-~~~g~~--------~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 224 (706)
T 2z3z_A 154 GMSRAIAVTIDGTET-LVYGQA--------VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY 224 (706)
T ss_dssp CCCCCEESCSCCBTT-EEESSC--------CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred cCCCcEEeccCCCCC-eEcccc--------hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence 5431110000000 000000 000122346788999 88888876 2
Q ss_pred ----------CcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeEee-c-
Q 006126 395 ----------GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLK-G- 454 (660)
Q Consensus 395 ----------g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~~~-~- 454 (660)
..|.+||+.+++...... .+...+.+++|+||| .|++++.++ .|++||+.+++....+. .
T Consensus 225 y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 225 YPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp CCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 579999999988655443 456778999999999 888877765 89999999984443332 2
Q ss_pred cCC---CeEEEEEeC--CCCEEEEEeCCCcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEE-EEEecCCcEEEE-E-
Q 006126 455 HQN---RITCLAYSL--SLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-I- 525 (660)
Q Consensus 455 ~~~---~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~-~- 525 (660)
+.. .+.++.|+| ||+++++++.|+.+++|++. ++. .+. ....+. ..+.+ ++|+|+|+.|+. +
T Consensus 305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-----~~~-~l~~~~---~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-----LIR-QVTKGE---WEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-----EEE-ECCCSS---SCEEEEEEECTTSSEEEEEES
T ss_pred CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-----EEE-ecCCCC---eEEEeeeEEcCCCCEEEEEec
Confidence 222 246789999 99999999999999999876 322 222 122333 45766 799999998877 4
Q ss_pred ecC----cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCe
Q 006126 526 HEG----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLE 583 (660)
Q Consensus 526 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----g~I~iwd~~~~~ 583 (660)
.++ .|+.||+.+++ ...+. +...+.+++|+|||++++.++.+ +.|++||+.+++
T Consensus 376 ~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 333 67888887765 33442 36678999999999998877554 569999999887
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=4.6e-19 Score=188.33 Aligned_cols=311 Identities=13% Similarity=0.076 Sum_probs=196.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
...+..+++++++.++++++.|+ +++|+............... .+........+ .+...|.+++|+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN--KIVDKVQGLLV------PMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT--CEEECCCCEEE------CCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc--cccccCccccc------cCCCcccEEEEcCCCCE
Confidence 45689999999999999999888 88887542211000000000 00000000011 467789999999 888
Q ss_pred EE----EEe-CCcEEEEECCCC--------eE---EEEEcCCCCCeEEEEEcCC-C-eEEEEeCCCeEEEEeCCCCceee
Q 006126 389 LF----SAS-GGKISIFSLETF--------QT---LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 389 l~----s~~-dg~I~iwd~~~~--------~~---~~~~~~~~~~v~~v~~sp~-~-~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
|+ +++ |+.|++||+.++ +. ...+.+|...|.+++|+|+ + .|++++.||+|++||++++..+.
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 88 666 899999998764 22 4455678999999999998 5 99999999999999999987777
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEE-E-ec
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLS-I-HE 527 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~-~-~d 527 (660)
...+|...|.+++|+|+|++|++|+.||+|++||++ ++........... ..|. ..|.+++|++++.++++ + .+
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEETT
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc---eeEEEEEEecCceEEEEEccCC
Confidence 777899999999999999999999999999999998 3322111111000 1122 37999999999988876 3 44
Q ss_pred C------cEEEEeCCCCc-----eeeeecCC-----CCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe---eEEE
Q 006126 528 G------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE---LRCQ 587 (660)
Q Consensus 528 ~------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~---~~~~ 587 (660)
| .+++||+++.+ ....+... ....+-..+.+-++.+++++++. .+.|.|....... ....
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 38999998652 11121110 11223333444477777776655 4556666644311 1111
Q ss_pred eecc--cccCCCCcCcccceEEEEEe--cCC------------CCEEEEEeCCCeEEEEeCCC
Q 006126 588 INLT--AYAQPGTISLELYPLVIAAH--PLE------------PNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 588 ~~~~--~~~~~gh~~~~v~~~~v~~s--p~d------------~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+... ...|..-.+...+++.+++. .++ ...|..-+.||.+..|.+-.
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1110 00111101122233333332 111 24678888999999998765
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=1.7e-19 Score=185.79 Aligned_cols=234 Identities=14% Similarity=0.022 Sum_probs=177.0
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCCCceeeEeeccC-----
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQ----- 456 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~~~~~~~~~~~~----- 456 (660)
+.++++++ ++.|.+||+.+++.+..+..+. ..+..++|+|+| .+ +++..++.|.+||+.+++.+..+..+.
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 45677777 8999999999999988887443 256789999999 55 555678999999999998887776322
Q ss_pred -CCeEEEEEeCCCCEEEEEeCC------------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 457 -NRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 457 -~~v~~l~~sp~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
..+.+++|+|+|+++++++.+ +.|.+||+.+++... .+. ....+ ..+.+++|+|+|+ ++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~-~~~~~----~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVR-TFPMP----RQVYLMRAADDGS-LY 162 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSE-EEECC----SSCCCEEECTTSC-EE
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--eee-eccCC----CcccceeECCCCc-EE
Confidence 237889999999999998865 899999998854221 111 11122 3578899999999 55
Q ss_pred EEecCcEEEEeCCCCceeeeecCCC-------------------------------------------------------
Q 006126 524 SIHEGQIDVYEAPTLNHTSQLVPDK------------------------------------------------------- 548 (660)
Q Consensus 524 ~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------------- 548 (660)
++ ++.|++||+.+++.+..+....
T Consensus 163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 53 3459999999988776654321
Q ss_pred -----------CCCCeEEEEEcc-CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 549 -----------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 549 -----------~~~~v~~~~~s~-dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
+...+..++|+| ||++++++ ++.|++||+.+++.+..+.. ..... +++|+| +++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~s~-dg~ 307 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYY--CVAFDK-KGD 307 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--EEEECS-SSS
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCcc--ceEECC-CCC
Confidence 011345678889 99999988 88999999999998877653 22234 899999 788
Q ss_pred EEEEEeCCCeEEEEeCCCCceeccCC
Q 006126 617 RIALGLTNGRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~~~~w~~~ 642 (660)
+|++++.++.|++||+.+++......
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeeee
Confidence 88888889999999999988754443
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=7.2e-20 Score=202.99 Aligned_cols=267 Identities=9% Similarity=0.005 Sum_probs=187.6
Q ss_pred CCCCeEEEEEecCCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~ 387 (660)
+..+|++++|+|||++||+++. ||++.||++.++.. .+.. .++...+..++|+ ++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~---------------------~~lt--~~~~~~~~~~~~spd~ 76 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET---------------------VKLN--REPINSVLDPHYGVGR 76 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE---------------------EECC--SSCCSEECEECTTCSE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc---------------------Eeee--cccccccccccCCCCe
Confidence 3568999999999999999887 99999998644432 2211 1233578899999 74
Q ss_pred EEEEEeC----CcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126 388 HLFSASG----GKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 388 ~l~s~~d----g~I~iwd~~~---~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
.+++++. ....+|.+.. +... .+... ..+...+|+|+| .+++.+.++.+.+||+.+++.......+ .
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~- 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G- 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C-
Confidence 5554442 4455654432 3222 33322 234466888887 3444444445559999988765554433 3
Q ss_pred eEEEEEeCCCCEEEEEeCC----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEE
Q 006126 459 ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QID 531 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~ 531 (660)
.+++|+|||+++++++.+ +.|++||+.+++.. ...+|. ..+..++|+|||+.|+++ .++ .|+
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-------~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-------VFDSGE---GSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-------EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-------EeecCC---CccccceECCCCCEEEEccCCCeeEEE
Confidence 789999999999988877 78999999886531 123444 578999999999999974 667 899
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEE--------EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCccc
Q 006126 532 VYEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 603 (660)
Q Consensus 532 iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v 603 (660)
+||+.+++.. .+. .+...+..++ |+|||.++++++.||.+++|++ |+..... ...+
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v 285 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNH 285 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEE
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCce
Confidence 9999988876 443 2455566666 9999999999999999999999 6654311 2223
Q ss_pred ceEEEEEecCCCCEEEEEeCCC---eEEEEeCCC
Q 006126 604 YPLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 634 (660)
Q Consensus 604 ~~~~v~~sp~d~~~l~s~s~Dg---~v~iw~~~~ 634 (660)
. +++|+ ++.++++++.+. .+++|+...
T Consensus 286 ~--~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 286 G--RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E--EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred E--EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 4 88888 578888888774 477777654
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=1.3e-19 Score=200.97 Aligned_cols=262 Identities=11% Similarity=0.020 Sum_probs=187.9
Q ss_pred eEecCCCCEEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEeccCC
Q 006126 268 STSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSN 343 (660)
Q Consensus 268 ~~~spdg~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~---dg~i~vw~~~~~ 343 (660)
+.|+|||+.||+++. ||+++||++. .+...+++ . .+...|..++|||| +.+++++. +....+|.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt--~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~- 97 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLN--R-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT- 97 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECC--S-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET-
T ss_pred eecCCCCCeEEEEEccCCceeEEEEc----CCCcEeee--c-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec-
Confidence 389999999999887 9999999986 35555542 2 13368999999999 77777765 45566765432
Q ss_pred ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC--EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeE
Q 006126 344 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKISIFSLETFQTLATFANPPPIAT 419 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~--~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~ 419 (660)
|+ ..+.. ... ....+...+|+ ++ .++++.++.+.+||+.+++..+....+. .
T Consensus 98 ---------------~~-~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~ 153 (582)
T 3o4h_A 98 ---------------SR-PGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---F 153 (582)
T ss_dssp ---------------TS-TTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---C
T ss_pred ---------------cC-CCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---c
Confidence 00 11111 111 11223344555 43 3444446666699999988766554433 7
Q ss_pred EEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeee
Q 006126 420 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLC 492 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~ 492 (660)
+++|+||| .|++++.+ +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++..++ .|++||+.+++..
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 89999999 88877776 78999999988754 6777888899999999999999888888 8999999986532
Q ss_pred ceeeeeeeeccCCCCCCeEEEE--------EecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 563 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 563 (660)
...+|. ..+..++ |+|||..+++ +.++.+++|++ ++.... ....+.+++|+ +|+
T Consensus 232 ------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 232 ------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RGK 294 (582)
T ss_dssp ------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TTE
T ss_pred ------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CCE
Confidence 223333 3455555 9999977676 48899999999 665542 24678899999 999
Q ss_pred EEEEEecCC---eEEEEECCC
Q 006126 564 CIYVSCKSG---HVKVFDTST 581 (660)
Q Consensus 564 ~l~sg~~dg---~I~iwd~~~ 581 (660)
++++++.+. .+++||..+
T Consensus 295 ~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 295 LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEcCCCCCCeEEEEcCCC
Confidence 999988874 477777654
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=7.5e-19 Score=180.85 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=178.5
Q ss_pred EEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe
Q 006126 316 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 393 (660)
Q Consensus 316 ~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~ 393 (660)
.+++++++.++++++.++.|.+||..+++. +..... +....+..++|+ +++++.++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence 356788899999999999999998876643 111110 121246788898 66665544
Q ss_pred --CCcEEEEECCCCeEEEEEcCCC------CCeEEEEEcCCC-eEEEEeCC------------CeEEEEeCCCCcee---
Q 006126 394 --GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKTK--- 449 (660)
Q Consensus 394 --dg~I~iwd~~~~~~~~~~~~~~------~~v~~v~~sp~~-~l~s~~~d------------~~I~iwd~~~~~~~--- 449 (660)
++.|.+||+.+++....+.... ..+.+++|+|+| .+++++.+ +.|.+||+.+++..
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 7899999999999887776332 236789999999 88888765 89999999885433
Q ss_pred eEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee-------------------------e----e
Q 006126 450 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------------------F----Q 500 (660)
Q Consensus 450 ~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-------------------------~----~ 500 (660)
..+. +...+.+++|+|+|+ +++++ +.|.+||+.+++......... . .
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 3343 344688999999999 55554 349999998876543221110 0 0
Q ss_pred ---------------------------------eccCCCCCCeEEEEEec-CCcEEEEEecCcEEEEeCCCCceeeeecC
Q 006126 501 ---------------------------------TGLVPETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 501 ---------------------------------~~~~~~~~~v~~~~~sp-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 546 (660)
..+. ..+..++|+| +|++++++ ++.|++||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT---ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECS---SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCC---CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC
Confidence 0000 2456788889 99999988 89999999999988877754
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 547 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 547 ~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 294 ---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 ---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34577899999999999988899999999999998888764
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=2.2e-18 Score=196.39 Aligned_cols=330 Identities=9% Similarity=0.082 Sum_probs=208.9
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEeccC
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~-----~V~~~~~spdg~~l~s~s~dg~i~vw~~~~ 342 (660)
+.|+|||++++++ ||+|++||+.+ +.+..+ +.. |.. ....++|||||++|+.++.++.+ |...
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~--~r~~- 89 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEY----GNSSVF-LEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQ--WRHS- 89 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTT----CCEEEE-ECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEEC--SSSC-
T ss_pred cEECCCCcEEEEc--CCcEEEEECCC----CceEEE-Eec--hhhhhhcccccceEECCCCCEEEEEECCeee--EEEc-
Confidence 4999999999987 99999999985 444443 333 332 23458899999999999876433 1100
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEEE-cCCCCCe-
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATF-ANPPPIA- 418 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~~-~~~~~~v- 418 (660)
....+.+||..++...... .|...+..++|+ |+.||.+.++.|++|++.+++..+.. .++...+
T Consensus 90 ---------~~~~~~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 90 ---------YTASYDIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp ---------EEEEEEEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred ---------cceEEEEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCcccee
Confidence 0111245555665544322 577789999999 88999999999999999988755422 2322222
Q ss_pred ----------------EEEEEcCCC-eEEEEeCCC------------------------------------eEEEEeCCC
Q 006126 419 ----------------TYFILLPQD-LFAFGFDDS------------------------------------SILVHCPCT 445 (660)
Q Consensus 419 ----------------~~v~~sp~~-~l~s~~~d~------------------------------------~I~iwd~~~ 445 (660)
..+.||||| .|+.++.|. .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 348999999 888765321 588899988
Q ss_pred ---Cc--eeeEee------ccCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCe----eeeceeeeeeeeccCCC
Q 006126 446 ---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 446 ---~~--~~~~~~------~~~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~ 506 (660)
++ ....+. +|...+..++|+|||+.++.... +..|++||+.+++ +.....+ ...++.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l--~~~~~~-- 313 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH--IEMSTT-- 313 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE--EEECSS--
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe--eeccCC--
Confidence 73 223333 37778999999999997665543 3479999999875 2111111 113333
Q ss_pred CCCeE-----EEEEecCCcEEE-E-E-ec--CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----
Q 006126 507 TTIVN-----HIQFHPDQIHLL-S-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----- 571 (660)
Q Consensus 507 ~~~v~-----~~~~sp~~~~l~-~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----- 571 (660)
..+. .+.|+|||+.++ . + .+ ..|++||+.++... .+... ...+..+. .+|++.|+..+..
T Consensus 314 -~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g--~~~v~~~~-~~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 314 -GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKG--TWEVIGIE-ALTSDYLYYISNEYKGMP 388 (740)
T ss_dssp -SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCS--SSCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred -ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccC--CEEEEEEE-EEeCCEEEEEEecCCCCC
Confidence 3443 788999999887 4 4 33 46999999766654 34321 45565544 2457666654433
Q ss_pred C--eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCce
Q 006126 572 G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESEV 637 (660)
Q Consensus 572 g--~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D---g~v~iw~~~~~~~ 637 (660)
+ .|+..++..+.....+.... .+. ....+ .+.|+| ++.+++..... ..+.+++..+++.
T Consensus 389 ~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~~--~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~~ 452 (740)
T 4a5s_A 389 GGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQYY--SVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (740)
T ss_dssp TCBEEEEEETTEEEEEEESSTTT---STT-TBCBE--EEEECT-TSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred ceeEEEEEECCCCCcceeecccc---CCC-CCceE--EEEECC-CCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence 2 45555665554332333110 011 12233 899999 78876654433 4678888876653
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=1.9e-18 Score=183.51 Aligned_cols=253 Identities=7% Similarity=-0.021 Sum_probs=168.2
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCC-------cceeeeec-CCCCCCCCeEEEEEecCCCEEE----EEECCC
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEP-------SECRTLLL-PDNSFGGRVVRLIYSHSGDFLV----ALTQTA 333 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~l-~~~~h~~~V~~~~~spdg~~l~----s~s~dg 333 (660)
..+++++++.++++++.|+ +++|+....... ........ ....|...|.+++|+|+|++|+ +++.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3358999999999999988 899876521100 01110000 0011567899999999999999 788899
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEE
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA 409 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~ 409 (660)
.|+|||+.+..... .... ..........+|...|.+++|+ +.+|++++ ||+|++||+.++....
T Consensus 119 ~v~iwd~~~~~~~~-----------~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 119 IIAFFDVRTFSNEA-----------KQQK-RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp EEEEEEHHHHHCTT-----------CSSC-CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred eEEEEEccccccCC-----------cCCc-ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 99999986541000 0000 0000001112689999999999 57899999 9999999999998777
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-------CCCeEEEEEeCCCCEEEEE-eCCC--
Q 006126 410 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNVLVSS-GADA-- 478 (660)
Q Consensus 410 ~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~-s~dg-- 478 (660)
...+|...|.+++|+|+| +|++|+.||.|++||++ ++....+..| ...|.++.|++++.++++. +.||
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 777888999999999999 99999999999999998 5655555443 2379999999988777543 3443
Q ss_pred ----cEEEEEcCCCeeeeceeeee---e-e--eccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeC
Q 006126 479 ----QLCVWDAVGWKKLCSKFLHS---F-Q--TGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 535 (660)
Q Consensus 479 ----~i~vwd~~~~~~~~~~~~~~---~-~--~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~ 535 (660)
.+++||++............ . + .+.. .+...+.+.++.+++++ + ..+.|.++..
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999998642110111110 0 0 0111 23334445577777776 3 4455666654
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=3.6e-18 Score=178.84 Aligned_cols=293 Identities=12% Similarity=0.029 Sum_probs=188.1
Q ss_pred CCCCeEE-----EEEecCCCEEEEEEC-CCc--EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEE
Q 006126 310 FGGRVVR-----LIYSHSGDFLVALTQ-TAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 381 (660)
Q Consensus 310 h~~~V~~-----~~~spdg~~l~s~s~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 381 (660)
|...... .+|||||++|+.++. +|. |.+|+.. ++....... ++...+..
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---------------------~g~~~~lt~--~~~~~~~~ 85 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN---------------------TQVATQLTE--GRGDNTFG 85 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT---------------------TCEEEECCC--SSCBCSSS
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC---------------------CCceEEeee--CCCCCccc
Confidence 4444554 889999999999988 675 4444443 343333221 34444556
Q ss_pred EEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEE--EcCCC-eEEEE----------------------e
Q 006126 382 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------F 433 (660)
Q Consensus 382 v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~--~sp~~-~l~s~----------------------~ 433 (660)
+.|+ ++.|+.++ ++.|++||+.+++....+..+...+.... ++|++ .++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 6798 88999998 78999999999988777766666554444 48999 66532 2
Q ss_pred CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCC
Q 006126 434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPE 506 (660)
Q Consensus 434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 506 (660)
.+..|++||+.+++.. .+..+...+..+.|+| ||+.|+.++.+ ..|.++|..++.. .. +...+..
T Consensus 166 ~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~- 237 (388)
T 3pe7_A 166 PCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RK---VKTHAEG- 237 (388)
T ss_dssp CCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EE---SCCCCTT-
T ss_pred CcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EE---eeeCCCC-
Confidence 3468999999988654 4445677899999999 99999887764 3788888876431 11 2222210
Q ss_pred CCCeEEEEEecCCcEEEE-Ee-cC----cEEEEeCCCCceeeeecCCCCC---CCeEEEEEccCCCEEEEE---------
Q 006126 507 TTIVNHIQFHPDQIHLLS-IH-EG----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVS--------- 568 (660)
Q Consensus 507 ~~~v~~~~~sp~~~~l~~-~~-d~----~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~sg--------- 568 (660)
..+..++|+|||+.|+. +. ++ .|++||+.+++.........+. ......+|+|||+.|+..
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred -cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 24778899999998866 42 22 3999999988753322211100 001123799999988854
Q ss_pred ecCCeEEEEECCCCeeEEEeeccccc---CCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCcee
Q 006126 569 CKSGHVKVFDTSTLELRCQINLTAYA---QPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVE 638 (660)
Q Consensus 569 ~~dg~I~iwd~~~~~~~~~~~~~~~~---~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~~~~~~~ 638 (660)
..+..|++||+.+++...... +... ..+ .....+..++|+| ||+.|+.++ .+|...||.+.-.+..
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~--~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVAR-HDTSWKVFEG--DRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEE-CCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred CCCCEEEEEeccCCceEEecc-ccCccccccc--ccccCCCCccCCC-CCCEEEEEecCCCceeEEEEECChhc
Confidence 446789999999987644322 1100 000 0001234789999 898887666 5777777776544433
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=5.1e-18 Score=174.97 Aligned_cols=260 Identities=8% Similarity=-0.015 Sum_probs=169.7
Q ss_pred eeEecCCCCEEEEEeC---CCcEEEEeccCcCCCcceeeee-cCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEecc
Q 006126 267 ESTSLPDADSAVCAKS---LEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQ 341 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~ 341 (660)
.+.|+|||+ +++++. ++.|.+|++.+ +....+. +.. |...+..++|+|||++|++++ .++.+.+|++.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~----g~~~~~~~~~~--~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDG----QTAHKLNTVVA--PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEET----TEEEEEEEEEE--ESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecC----CcEEEeeeeec--CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 359999999 555544 68999999963 3332221 111 567889999999999999888 57899999875
Q ss_pred CCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 006126 342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 421 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v 421 (660)
...... .+.. ......... .......+.++
T Consensus 117 ~~g~~~------------------~~~~------------------------------~~~~~~~p~--~~~~~~~~~~~ 146 (347)
T 3hfq_A 117 ADGALT------------------LTDT------------------------------VQHSGHGPR--PEQDGSHIHYT 146 (347)
T ss_dssp TTSCEE------------------EEEE------------------------------EECCCCCSS--TTCSSCCEEEE
T ss_pred CCCCee------------------ecce------------------------------eecCCCCCC--ccccCCCceEE
Confidence 321100 0000 000000000 01123457889
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCC-CCceee--Eeec-cCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeec
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPC-TKKTKA--KLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCS 493 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~-~~~~~~--~~~~-~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~ 493 (660)
+|+|+| .++++..++.|.+|++. +++... .+.. ....+..++|+|||+++++ ...++.|.+|++.. ++....
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 999999 88888889999999998 554332 2222 2336788999999997665 45688999999874 432211
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCC-C--ceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~-~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
..+.....+.. ....+..++|+|||++|++ + .++.|.+||+.. + +.+..+.. +...+..++|+|||++|+++
T Consensus 227 ~~~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 227 GIVKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp EEEESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEE
T ss_pred eeeeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEE
Confidence 11211111100 0024888999999998866 3 578999999973 2 34444433 35567899999999999888
Q ss_pred ecC-CeEEEE--ECCCCeeEE
Q 006126 569 CKS-GHVKVF--DTSTLELRC 586 (660)
Q Consensus 569 ~~d-g~I~iw--d~~~~~~~~ 586 (660)
+.+ +.|.+| |..++++..
T Consensus 304 ~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 304 NQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ETTTTEEEEEEECTTTCCEEE
T ss_pred EcCCCcEEEEEEeCCCCeEEe
Confidence 765 899999 556777654
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=3.8e-17 Score=169.43 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=164.1
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C----CcEEEEECCC--CeE--EEEEcCCCCCeEEEEEcCCC-eEEEEe-CCCeEEEE
Q 006126 375 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 441 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~--~~~--~~~~~~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iw 441 (660)
+...+..++|+ +++|++++ + +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 44556778999 88888888 4 6999998865 443 3334445556677777 66 555555 68899999
Q ss_pred eCCCCceeeEe------ec--------cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCee------eece-eeeee
Q 006126 442 CPCTKKTKAKL------KG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF 499 (660)
Q Consensus 442 d~~~~~~~~~~------~~--------~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~------~~~~-~~~~~ 499 (660)
++.....+..+ .+ +...+.+++|+|+|+++++++ .++.|.+|++..... .... .....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754332211 11 123458899999999776655 478999999876431 1100 00101
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEeCCCCce--eeeecC-CCCCCCeEEEEEccCCCEEEEEecC--C
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G 572 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~d--g 572 (660)
...+. ..+..++|+|||+++++ + .++.|.+||+.+++. +..+.. ..+......++|+|||++|+++..+ +
T Consensus 206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11222 46789999999998887 4 578999999987654 222221 1234557899999999999776664 8
Q ss_pred eEEEEECC--CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe-CCCeEEEEeC--CCCce
Q 006126 573 HVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP--LESEV 637 (660)
Q Consensus 573 ~I~iwd~~--~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~--~~~~~ 637 (660)
.|.+|++. +++........ . .. .+.+++|+| |+++|++++ .++.|.+|++ .+++.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~-----~--g~--~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQL-----T--GI--HPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-----C--SS--CCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCcEEEeeEec-----C--CC--CCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 99999996 45533222111 0 11 233899999 899888887 6789999655 45554
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=5.8e-18 Score=177.24 Aligned_cols=272 Identities=13% Similarity=0.052 Sum_probs=176.2
Q ss_pred EecCCCCEEEEEeC-CCc--EEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 269 TSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 269 ~~spdg~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
.|||||++|++++. +|. |.+||+.+ +....+. .+|...+..++|+|||++|+.++.++.+.+||+.+++.
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNT----QVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----CEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCC----CceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 89999999999987 674 77778763 5555432 12455555788999999999999999999999887654
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--e--CCEEEEE----------------------e-CCcEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKIS 398 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s--~~~l~s~----------------------~-dg~I~ 398 (660)
.. ++. .+...+....| + +.+++.. . +..|.
T Consensus 115 ~~----------~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 115 NV----------VYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp EE----------EEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred ee----------eee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 21 111 12333333333 3 5555432 1 36799
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcC-CC-eEEEEeCC------CeEEEEeCCCCceeeEeeccC--CCeEEEEEeCCC
Q 006126 399 IFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSL 468 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d------~~I~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~ 468 (660)
+||+.+++.... ..+...+..+.|+| || .|+.+..+ ..|.++|+.++.. ..+..+. ..+..+.|+|||
T Consensus 172 ~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 172 RVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS
T ss_pred EEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC
Confidence 999999875443 34556788999999 99 77766653 3788888876543 3444443 357788999999
Q ss_pred CEEEEEeCC-C----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE----------ecCcEEEE
Q 006126 469 NVLVSSGAD-A----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVY 533 (660)
Q Consensus 469 ~~l~s~s~d-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----------~d~~i~iw 533 (660)
+.|+..+.+ + .|++||+.+++... +. ...++.........+.|+|||+.|+.. .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQ---LT-SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEE---EE-EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEE---EE-cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 987665432 2 39999999876321 11 111100000001124799999988862 24589999
Q ss_pred eCCCCceeeeecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCeEEEEEC
Q 006126 534 EAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFDT 579 (660)
Q Consensus 534 d~~~~~~~~~~~~~~~~~-----------~v~~~~~s~dg~~l~sg~~-dg~I~iwd~ 579 (660)
|+.+++.. .+.. +.. .+.+++|+|||+.|+..+. +|...||.+
T Consensus 326 d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 326 NMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 99887653 3332 233 4778899999998887664 565555543
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=9.3e-17 Score=166.87 Aligned_cols=279 Identities=7% Similarity=0.003 Sum_probs=179.3
Q ss_pred EEEEeCC--CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc-CCceeeeeeccc
Q 006126 277 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN 353 (660)
Q Consensus 277 l~s~~~d--g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~-~~~~~~~~~~~~ 353 (660)
++.|+.. +.|.+|++... ++.+..+.....++...+..++|+|||++|++++.+ .|.+|++. +++...
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~--~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------ 75 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDE--KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------ 75 (365)
T ss_dssp EEEEESSSSCEEEEEEEETT--TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE------
T ss_pred EEEEEccCCCcEEEEEEECC--CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE------
Confidence 4555543 56887776421 234433221101134578899999999999999888 89999976 443210
Q ss_pred eeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE--EEEE--------------eCCcEEEEECC-CCeEEEEEc--
Q 006126 354 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA-- 412 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~--l~s~--------------~dg~I~iwd~~-~~~~~~~~~-- 412 (660)
+.... .+ +.+.+++|+ |++ ++++ .+|.+.+|++. +++....+.
T Consensus 76 ----~~~~~-----------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~ 139 (365)
T 1jof_A 76 ----EASHP-----------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp ----EEEEE-----------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred ----eeEee-----------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence 00000 01 113345666 553 3333 36889999997 466554443
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEe-CCCeEEEEeCC-CCcee--eEee--ccCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 006126 413 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV 482 (660)
Q Consensus 413 --~~~~~v~~v~~sp~~-~l~s~~-~d~~I~iwd~~-~~~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~s~-dg~i~v 482 (660)
.+...+.+++|+||| .++++. .++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 245678999999999 777665 46799999998 67653 2333 24567899999999999888775 689999
Q ss_pred EEcC--CCeeee-ceeeeeeee---ccCCCCC------CeEEEE-EecCCcEEEEE-e-cC-----cEEEEeCC-CCcee
Q 006126 483 WDAV--GWKKLC-SKFLHSFQT---GLVPETT------IVNHIQ-FHPDQIHLLSI-H-EG-----QIDVYEAP-TLNHT 541 (660)
Q Consensus 483 wd~~--~~~~~~-~~~~~~~~~---~~~~~~~------~v~~~~-~sp~~~~l~~~-~-d~-----~i~iwd~~-~~~~~ 541 (660)
|++. +++... ...+..+.. ++. . .+..++ |+|||++|+++ . ++ .|.+|++. +++..
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRD---PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBC---TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcc---cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 9875 443211 011221111 111 1 478999 99999998874 3 33 89999996 56654
Q ss_pred eeec-CCCCCCCeEEEEEcc---CCCEEEEEecC-CeEEEEECCCCe
Q 006126 542 SQLV-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 583 (660)
Q Consensus 542 ~~~~-~~~~~~~v~~~~~s~---dg~~l~sg~~d-g~I~iwd~~~~~ 583 (660)
.... ...+...+..++|+| ||++|++++.+ +.|.+|++....
T Consensus 297 ~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 297 KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3111 111234566789999 89999998875 899999998763
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=8.6e-17 Score=167.09 Aligned_cols=247 Identities=13% Similarity=0.088 Sum_probs=167.4
Q ss_pred CCCeEEEEEe--CCEEEEEeCCcEEEEECC-CCeEEEEEcC-CCCCeEEEEEcCCC-e-E-EEEe-------------CC
Q 006126 376 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L-F-AFGF-------------DD 435 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~dg~I~iwd~~-~~~~~~~~~~-~~~~v~~v~~sp~~-~-l-~s~~-------------~d 435 (660)
...+..++|+ +++|++++.+.|.+|++. +++....... ......+++|+|+| . + +++. .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3457789999 788888883399999997 7876544321 11235568999999 5 3 3442 68
Q ss_pred CeEEEEeCC-CCceeeEee----ccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC-CCeeeeceeeeeeee-ccCCCC
Q 006126 436 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQT-GLVPET 507 (660)
Q Consensus 436 ~~I~iwd~~-~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~ 507 (660)
+.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||+. +++... +..... .+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~~g--- 192 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL---VGSVDAPDPG--- 192 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE---EEEEECSSTT---
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE---eeeEecCCCC---
Confidence 999999997 466544443 24567999999999998887664 6799999998 654321 111111 122
Q ss_pred CCeEEEEEecCCcEEEEE--ecCcEEEEeCC--CCcee---eeec---CC--CCCC------CeEEEE-EccCCCEEEEE
Q 006126 508 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLV---PD--KMDL------PITYAT-YSCDGKCIYVS 568 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~--~~~~~---~~~~---~~--~~~~------~v~~~~-~s~dg~~l~sg 568 (660)
..+..++|+|||++++++ .++.|.+|++. +++.. ..+. .. .+.. .+..++ |+|||++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 468899999999999874 46899999765 56542 1221 11 0111 488999 99999998877
Q ss_pred ecC-C-----eEEEEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecC--CCCEEEEEeCC-CeEEEEeCCCC
Q 006126 569 CKS-G-----HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 635 (660)
Q Consensus 569 ~~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~--d~~~l~s~s~D-g~v~iw~~~~~ 635 (660)
..+ + .|.+|++. ++++........ .+ ..... .++|+|. ||++|++++.+ ++|.||++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 653 2 89999996 676543221000 01 11233 6889995 58999988864 89999998765
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=190.29 Aligned_cols=288 Identities=12% Similarity=-0.009 Sum_probs=191.9
Q ss_pred eeEecCCCCEEEEEeC---------CCcEEEEeccCcCCCcceee-eecCCCCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 006126 267 ESTSLPDADSAVCAKS---------LEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 336 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~-~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~ 336 (660)
...|||||++|++++. +++|++||+.+ +.... ..+ ...+..++|||||++|++++ ++.|+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~l-----~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNEL-----PRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECCSSCC-----CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----Cccccceec-----CcccccceECCCCCEEEEEE-CCeEE
Confidence 3599999999999876 78999999984 44410 112 35688999999999999886 78999
Q ss_pred EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCC---------eEEEEEe--CCEEEEEe-CC---------
Q 006126 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS---------ISCFALR--GSHLFSAS-GG--------- 395 (660)
Q Consensus 337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~v~~s--~~~l~s~~-dg--------- 395 (660)
+|++.++...... .+........ |+... ..+++|+ |++|++++ |.
T Consensus 134 ~~~~~~g~~~~l~---------~~~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 134 LKQRPGDPPFQIT---------FNGRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp EESSTTSCCEECC---------CCCBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred EEeCCCCCcEEEe---------cCCCcCCeEc-----ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 9988766541110 0000000000 23222 2588999 88999887 42
Q ss_pred -------------------------cEEEEECCCCeEE---E-----EEcCCCCCeEEEEEcCCC-eEEEEeCC----Ce
Q 006126 396 -------------------------KISIFSLETFQTL---A-----TFANPPPIATYFILLPQD-LFAFGFDD----SS 437 (660)
Q Consensus 396 -------------------------~I~iwd~~~~~~~---~-----~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~ 437 (660)
.|++||+.+++.. . .+..+...+..++|+||+ .+++.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999987653 1 123577788999999999 66664432 25
Q ss_pred EEEEe----CCCCceeeEe----eccCCCeE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCCeeeeceeeeeee
Q 006126 438 ILVHC----PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 438 I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~sp~~~~l~s--~s~dg--~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
|.+|| +.+++....+ .+|...+. .+.|+|||+.++. ...+| .|.+||+.+++ .. ..
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------~~-~l 352 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------AI-QI 352 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------CE-EC
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------eE-ec
Confidence 88999 8888776665 46777776 8899999996554 44555 46777776643 11 11
Q ss_pred eccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEEeCCC--Cc-eeeeecC--CCCCCCeEEEEEccCCCEEEEE-
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIYVS- 568 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~iwd~~~--~~-~~~~~~~--~~~~~~v~~~~~s~dg~~l~sg- 568 (660)
..+. ..+..+.++ +++.++. +.+ +..++|.+.. +. ....+.. ..+...+..+.|+|||++++..
T Consensus 353 t~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 353 TSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp SCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred ccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 2222 457777878 8888877 543 6788887653 32 1233321 1135678889999999877754
Q ss_pred ecC--CeEEEEECCCCeeEEEee
Q 006126 569 CKS--GHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 569 ~~d--g~I~iwd~~~~~~~~~~~ 589 (660)
+.+ ..+++||+.+++....+.
T Consensus 429 s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 429 YGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCCCeEEEEECCCCCEEEEee
Confidence 333 578999998888665554
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=1.3e-16 Score=181.87 Aligned_cols=251 Identities=12% Similarity=0.129 Sum_probs=167.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
......++|+|||++++++ ||.|++|++.+++.. .+....+.. .+......+.|+ |++
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------~~~~~~~~~--------~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------VFLENSTFD--------EFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------EEECTTTTT--------TCCSCCCEEEECTTSSE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceE----------EEEechhhh--------hhcccccceEECCCCCE
Confidence 4456789999999988886 999999998877641 111111000 111223457888 888
Q ss_pred EEEEe-C---------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccC
Q 006126 389 LFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQ 456 (660)
Q Consensus 389 l~s~~-d---------g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~ 456 (660)
|+.++ + +.+.+||+.+++..+ +..+...+..++||||| .|+.+. |+.|++||+.+++..+. ..++.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence 88888 4 567899999988653 66677889999999999 888874 78999999988875432 22333
Q ss_pred CCe-----------------EEEEEeCCCCEEEEEeCCC------------------------------------cEEEE
Q 006126 457 NRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCVW 483 (660)
Q Consensus 457 ~~v-----------------~~l~~sp~~~~l~s~s~dg------------------------------------~i~vw 483 (660)
..+ ..+.|||||+.|+.++.|. +|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 222 3588999999999876432 47778
Q ss_pred EcCC---Ceeeeceeeee--eeeccCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCc----ee--eeecCC
Q 006126 484 DAVG---WKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLN----HT--SQLVPD 547 (660)
Q Consensus 484 d~~~---~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~----~~--~~~~~~ 547 (660)
|+.+ ++......+.. ...++. ..+..++|+|||+.++. .. +..|++||+.+++ +. ..+...
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred ECCCCCCCCcceEEEecCCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 8877 52111111110 001244 57889999999997766 32 2369999999887 32 222111
Q ss_pred CCCCCeE-----EEEEccCCCEEE-EEec-C--CeEEEEECCCCeeEE
Q 006126 548 KMDLPIT-----YATYSCDGKCIY-VSCK-S--GHVKVFDTSTLELRC 586 (660)
Q Consensus 548 ~~~~~v~-----~~~~s~dg~~l~-sg~~-d--g~I~iwd~~~~~~~~ 586 (660)
.+...+. ..+|+|||+.++ ..+. + ..|++||+.+++...
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 2343333 688999999877 6654 3 468899998876554
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=6.4e-16 Score=160.01 Aligned_cols=297 Identities=15% Similarity=0.116 Sum_probs=197.6
Q ss_pred CCCCEEEEEe------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CCcE
Q 006126 272 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 335 (660)
Q Consensus 272 pdg~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg~i 335 (660)
+++++++... .|+.|.+||..+ ++... +++. +..+ .++|+|||++++++.. ++.|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN----GKFLG-MVPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT----CCEEE-EEEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC----CeEEE-EecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 4666666554 367999999874 33332 2332 3333 8999999999998863 5678
Q ss_pred EEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEE
Q 006126 336 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT 410 (660)
Q Consensus 336 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~ 410 (660)
.+||..+.+.... .....+.. .+......++++ |++|++++ ++.|.+||+.+++.+..
T Consensus 84 ~v~d~~t~~~~~~----------i~~~~~~~-------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 84 EVWDADKLTFEKE----------ISLPPKRV-------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTCCEEEE----------EEECTTBC-------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEECcCCcEEEE----------EEcCcccc-------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 8888765543111 00000000 123446678888 88888876 37899999999998887
Q ss_pred -EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-Cceee------EeeccCCCeEEEEEeCCCCEEEEEeCCCcE
Q 006126 411 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKA------KLKGHQNRITCLAYSLSLNVLVSSGADAQL 480 (660)
Q Consensus 411 -~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~------~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i 480 (660)
+... ....+.+.|++ .+++.+.||.+.+|+... ++... .+..+..++ .+.++|++..++..+.++.+
T Consensus 147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 5432 22336678877 788889999999999865 55441 222222222 23346788888888899999
Q ss_pred EEEEcCCCeeeeceeeeeeee------ccCCCCCCeEEEEEecCCcEEEEE-e-----------cCcEEEEeCCCCceee
Q 006126 481 CVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTS 542 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~-~-----------d~~i~iwd~~~~~~~~ 542 (660)
.++|+............ +.. +..+ .....++|+|+++.++++ . .+.|.+||+.+++.+.
T Consensus 224 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~ 300 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWS-LLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA 300 (361)
T ss_dssp EEEECSSSSCEEEEEEE-SCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE
T ss_pred EEEEecCCCceeccccc-ccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE
Confidence 99999764321111111 000 0000 112237899998888874 3 2479999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC--eeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
++..+ . +.+++|+|||++|++++. +.|.+||..++ +.+..+... | . ....++++| +|.
T Consensus 301 ~i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G--~---~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 301 RIPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A--E---ASLQVQFHP-VGG 360 (361)
T ss_dssp EEECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C--S---SEEEEEECC-CSC
T ss_pred EEecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C--C---CcEEEEecC-CCC
Confidence 98763 3 899999999999998887 99999999999 888776421 2 2 234789999 664
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=4.7e-17 Score=170.60 Aligned_cols=280 Identities=11% Similarity=0.044 Sum_probs=178.7
Q ss_pred CCeEEEEEecCCCEEEEEECC-C--cEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 312 GRVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
..+..++|||||++|+.+... + .+.+|+..+++ ...... ++......+.|+ |
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---------------------~~~l~~--~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---------------------AVQLTE--GKGDNTFGGFISTDE 92 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---------------------EEECCC--SSCBCTTTCEECTTS
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---------------------EEEeec--CCCCccccceECCCC
Confidence 347788999999998887653 3 45555554433 222111 122222236788 8
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEE-------------------EEEcCCC-eEEEE-----eCCCeEEE
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILV 440 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~-------------------v~~sp~~-~l~s~-----~~d~~I~i 440 (660)
++|+.++ ++.|.+||+.+++.......+...... +.|+|++ .++.+ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 8898888 789999999998876665544432222 3467777 44433 45668999
Q ss_pred EeCCCCceeeEeeccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 441 HCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 441 wd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+.++.. .. +...... ..+..+
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~---l~~~~~~--~~~~~~ 243 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RK---IKEHAEG--ESCTHE 243 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EE---SSCCCTT--EEEEEE
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eE---eeccCCC--ccccce
Confidence 999988765444 4677899999999 88877776654 3688889876431 11 1121110 357789
Q ss_pred EEecCCcEEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEEe----------------c
Q 006126 514 QFHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------K 570 (660)
Q Consensus 514 ~~sp~~~~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~----------------~ 570 (660)
+|+|||++|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 99999998776 443 4499999988875443322 1 133 89999 999888765 2
Q ss_pred CCeEEEEECCCCeeEEEeecccccC---CCCcCcccceEEEEEecCCCCEEEEEeC-CCeEEEEeC
Q 006126 571 SGHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEP 632 (660)
Q Consensus 571 dg~I~iwd~~~~~~~~~~~~~~~~~---~gh~~~~v~~~~v~~sp~d~~~l~s~s~-Dg~v~iw~~ 632 (660)
++.|++||+.+++... +..+.... .+ +.......++|+| ||+.|+.++. ++...||.+
T Consensus 319 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 319 DPFLYVLNTKAKSAQK-LCKHSTSWDVLDG--DRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCEEEEEETTTTBCCE-EEECCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred CCcEEEEecccCceEE-ccCCCCccccccc--cccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence 4789999999887543 32210000 00 0001123678999 8988887764 565555554
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=4.5e-15 Score=148.27 Aligned_cols=239 Identities=10% Similarity=0.065 Sum_probs=174.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC------CCCCeEEEEE-cCCC-eEEEEeC-CCeEEEE
Q 006126 374 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 441 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~------~~~~v~~v~~-sp~~-~l~s~~~-d~~I~iw 441 (660)
++-..+.+++++ +.++++.. ++.|.+||.. ++....+.. +...+..+++ .+++ ++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678899998 66666666 7999999987 666666642 3356789999 4677 5555533 8899999
Q ss_pred eCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee-ccCCCCCCeEEEEEecCC
Q 006126 442 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ 519 (660)
Q Consensus 442 d~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~ 519 (660)
| .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... +. +..... ++. ..+..++++|+|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-----~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-----LHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-----EEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-----EEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777766643 446789999999999888877889999999754 21 121111 222 468899999999
Q ss_pred cEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-eEEEEECCCCeeEEEeecccccCCC
Q 006126 520 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 597 (660)
Q Consensus 520 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-~I~iwd~~~~~~~~~~~~~~~~~~g 597 (660)
+.+++. .++.|++||. +++.+..+....+...+..++++++|+++++...++ .|++||. +++.+..+...
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------ 247 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------ 247 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence 977774 6889999998 566666665433346789999999999888888776 9999995 46666665432
Q ss_pred CcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 598 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
.....+.+++++| +|+++++ +.|++|++|++...
T Consensus 248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112244899999 8887777 57999999998653
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=2.4e-15 Score=153.74 Aligned_cols=246 Identities=14% Similarity=0.079 Sum_probs=179.6
Q ss_pred CCCeEEEEEe--CCEEEEEe-C------------------------CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC
Q 006126 376 KDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQD 427 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~-d------------------------g~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~ 427 (660)
-..+.+++++ |+++++.. + +.|.+||..+++....+. .+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568999999 77777766 5 379999999999887765 444678899999999
Q ss_pred -eEEEEeCCCeEEEEeCCCCc-eeeEe---------eccCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEcCCCeeeece
Q 006126 428 -LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 428 -~l~s~~~d~~I~iwd~~~~~-~~~~~---------~~~~~~v~~l~~sp-~~~~l~s~s-~dg~i~vwd~~~~~~~~~~ 494 (660)
++++...++.|++||..... .+..+ .++-.....++++| ++.++++.+ .++.|++||.. +......
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence 88888889999999986442 45555 23445789999999 788888886 68999999944 3322211
Q ss_pred eeeeee----eccCCCCCCeEEEEEecC-CcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEE-
Q 006126 495 FLHSFQ----TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV- 567 (660)
Q Consensus 495 ~~~~~~----~~~~~~~~~v~~~~~sp~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~s- 567 (660)
...... .++. .....++++|+ +..+++. .++.|++||..+++.+..+....+...+..++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 182 GEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp CEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred ccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 100000 0111 34789999999 6655554 77899999998899988886555677889999999 433333
Q ss_pred ------EecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 568 ------SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 568 ------g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
...+..|++|+..+++.+..+... .++ .-.+..++++| +|.++++...+++|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~---~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKH---FDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCS----SSC---CSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCc---cCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 334458999999999988876421 011 12345899999 888889998999999999864
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=8.2e-14 Score=151.73 Aligned_cols=323 Identities=11% Similarity=0.047 Sum_probs=218.5
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEecc--CCceeee
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ--SNKQSLE 348 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~--~~~~~~~ 348 (660)
|.+.++++...++.|.++|..+ .++. .+. ....+..++|||||+++++++.|+.|.+||+. +.+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t----~~v~~~i~-----~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~--- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST----YEIKTVLD-----TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT----CCEEEEEE-----CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE---
T ss_pred CCceEEEEeCCCCeEEEEECCC----CeEEEEEe-----CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE---
Confidence 4456777888889999999984 3333 332 24467899999999999999999999999974 3322
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEECCCCeEEEEEcCC------
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP------ 414 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s------~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~------ 414 (660)
+.... .......++|+ |+++++++ +++|.++|..+.+.+..+...
T Consensus 233 ------------------v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~ 291 (567)
T 1qks_A 233 ------------------VAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 291 (567)
T ss_dssp ------------------EEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred ------------------eEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence 11111 12234566776 66887777 699999999999998876521
Q ss_pred -----CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe-eccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 006126 415 -----PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDA 485 (660)
Q Consensus 415 -----~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~ 485 (660)
...+..+..++++ .++....+|.|.++|..+.+.+... ........++.|+|+|++++++. .++.|.++|+
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 2267888999988 6666677899999998765433221 12345677889999999987665 5789999999
Q ss_pred CCCeeeeceee-eeeeeccCCCCCCeEEEEEecCCcEEE-EE--ecCcEEEEeCCC-------CceeeeecCCCCCCCeE
Q 006126 486 VGWKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLL-SI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPIT 554 (660)
Q Consensus 486 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~v~ 554 (660)
.+++......+ . ...|. +.-..+ ++|++..+. ++ .++.|.++|..+ .+.++++... ...-.
T Consensus 372 ~t~kl~~~i~vgg--~~Php---g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~ 443 (567)
T 1qks_A 372 KEGKLVAIEDTGG--QTPHP---GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSL 443 (567)
T ss_dssp TTTEEEEEEECSS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCC
T ss_pred CCCcEEEEEeccC--cCCCC---ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCE
Confidence 99765443332 1 11221 222222 688855554 45 468999999987 5677777653 22234
Q ss_pred EEEEccCCCEEEEEec-------CCeEEEEECCCC-----eeE-EEeeccc--ccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 555 YATYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTA--YAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~-------dg~I~iwd~~~~-----~~~-~~~~~~~--~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
.+..+|+++++++... .+.|.+||+.+. ... ..+.... ..+.| ..++..+.|+| +|+.+.
T Consensus 444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~G~~~~ 518 (567)
T 1qks_A 444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG----QPRVVQGEFNK-DGTEVW 518 (567)
T ss_dssp CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS----CCEEEEEEECT-TSSEEE
T ss_pred EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC----CcceEeeeECC-CCCEEE
Confidence 4778999999998763 358999999876 211 2332100 01111 22355899999 788765
Q ss_pred EEe-----CCCeEEEEeCCCCceecc
Q 006126 620 LGL-----TNGRVHVIEPLESEVEWG 640 (660)
Q Consensus 620 s~s-----~Dg~v~iw~~~~~~~~w~ 640 (660)
.+. .++.|.|+|..+++.+-.
T Consensus 519 ~s~~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 519 FSVWNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEECCCceEEEE
Confidence 543 379999999999987543
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.1e-14 Score=145.39 Aligned_cols=242 Identities=10% Similarity=0.087 Sum_probs=175.6
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe---C
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~ 386 (660)
|-..+.+++++|+|+.+++.+.++.|.+|+...... ..+... + ...++...+..+++. +
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------~~~~~~-~------~~~~~~~~p~~i~~~~~~g 89 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGEC-G------KRDSQLLYPNRVAVVRNSG 89 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------EEECCB-S------SSTTCBSSEEEEEEETTTT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------EEeccc-C------CCcccccCceEEEEEcCCC
Confidence 567899999999999888888899999998763321 111110 0 001345668899994 4
Q ss_pred CEEEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeE
Q 006126 387 SHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT 460 (660)
Q Consensus 387 ~~l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~ 460 (660)
.++++.. ++.|.+|| .+++.+..+. .+...+.+++++|+| .+++...++.|.+||.. ++.+..+. .+...+.
T Consensus 90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 4455543 68999999 5677777775 344578899999999 77777788999999964 66666664 3456789
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEEE-ecC-cEEEEeCCC
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPT 537 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~-~d~-~i~iwd~~~ 537 (660)
+++++|+|+++++.+.++.|++||.... .+..+. .++. ..+..++++|+|+++++. .++ .|.+||. +
T Consensus 168 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 9999999998888788999999998542 122111 1222 368899999999888875 555 9999996 6
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
++.+..+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 777777755333445789999999987777 57999999998654
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=7e-16 Score=161.63 Aligned_cols=282 Identities=7% Similarity=-0.019 Sum_probs=174.2
Q ss_pred EecCCCCEEEEEeCC---CcEEEEeccCcCCCcceeeeecCCCCCCCC-eEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126 269 TSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTATHKLWKWQSNK 344 (660)
Q Consensus 269 ~~spdg~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~-V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~ 344 (660)
.|||||++|+..... ..+.+||..+ +....+. . +... ...+.|+|||++|+.++.++.+.+|++.+++
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~----~~~~~l~--~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLET----QQAVQLT--E--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----TEEEECC--C--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCC----CcEEEee--c--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 899999998877653 3677888874 4444432 1 2233 3347899999999999999999999987765
Q ss_pred eeeeee-ccceeEEEecCCCCceeeecccCCCCCCeE-----EEEEe--CCEEEEE-----e-CCcEEEEECCCCeEEEE
Q 006126 345 QSLEEE-NVNMESQLYQPSSKLVMTNDIAADPKDSIS-----CFALR--GSHLFSA-----S-GGKISIFSLETFQTLAT 410 (660)
Q Consensus 345 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~v~~s--~~~l~s~-----~-dg~I~iwd~~~~~~~~~ 410 (660)
...... ... |.+. +..+. + ....... .+.|+ ++.++.+ . +..|.+||+.+++....
T Consensus 114 ~~~~~~~~~~-----~~~~-g~~l~--~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 114 EQVIYTVDEE-----WKGY-GTWVA--N--SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEEEECCTT-----EEEE-EEEEE--C--TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred cEEEEecccc-----cCCC-CCEEE--e--ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 422100 000 0000 00000 0 0000000 01223 3333322 2 56899999998876554
Q ss_pred EcCCCCCeEEEEEcC-CC-eEEEEeCC------CeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEeCC----
Q 006126 411 FANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD---- 477 (660)
Q Consensus 411 ~~~~~~~v~~v~~sp-~~-~l~s~~~d------~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d---- 477 (660)
. .+...+..+.|+| ++ .|+..+.+ ..|.+||+.+++........ ...+..+.|+|+|++|+.++.+
T Consensus 184 ~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 184 H-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp E-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred c-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence 4 4566788999999 77 66665543 46899998766533332311 2357889999999988777554
Q ss_pred -CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEEE-----------------ecCcEEEEeCCCC
Q 006126 478 -AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-----------------HEGQIDVYEAPTL 538 (660)
Q Consensus 478 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~-----------------~d~~i~iwd~~~~ 538 (660)
+.|++||+.+++... +. .. .... +.|+| ||++++++ .+..|++||+.++
T Consensus 263 ~~~l~~~d~~~g~~~~---l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 263 DRVIYKANPETLENEE---VM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CEEEEEECTTTCCEEE---EE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred cceEEEEECCCCCeEE---ee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 449999998864321 11 11 1233 89999 99988863 2368999999877
Q ss_pred ceeeeecCCCCCC-----------CeEEEEEccCCCEEEEEec-CCe--EEEEECCCCee
Q 006126 539 NHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLEL 584 (660)
Q Consensus 539 ~~~~~~~~~~~~~-----------~v~~~~~s~dg~~l~sg~~-dg~--I~iwd~~~~~~ 584 (660)
+.. .+... .. .+..++|+|||+.|+.++. ++. |+++++.+++.
T Consensus 331 ~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 331 SAQ-KLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BCC-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ceE-EccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 653 33321 22 2566899999999887765 444 55556665543
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=1e-14 Score=148.90 Aligned_cols=240 Identities=9% Similarity=0.024 Sum_probs=173.2
Q ss_pred CCeEEEEEeCC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee
Q 006126 377 DSISCFALRGS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 453 (660)
Q Consensus 377 ~~v~~v~~s~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~ 453 (660)
.....+.+.++ ..++.. ++.|.+||..+++.+.++. .......+++++++ .+++...++.|.+||+.+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 44677888844 444444 7999999999999988885 34567899999999 55555589999999999998877765
Q ss_pred ccC-----CCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-
Q 006126 454 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 525 (660)
Q Consensus 454 ~~~-----~~v~~l~~sp~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~- 525 (660)
... .....+++ . +..++++. .++.|.+||..+++.... +..+ .....++++|+|++++++
T Consensus 123 ~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~-----i~~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDE-----LTIG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEE-----EECS-----SCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEE-----EEcC-----CCccceEEcCCCCEEEEEC
Confidence 432 14556777 3 44555444 488999999999764332 2222 245678999999977774
Q ss_pred ec----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126 526 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 595 (660)
Q Consensus 526 ~d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 595 (660)
.+ +.|.++|..+++....+.... ......++|+|+++.++++.. .|++||..+++..... +..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 33 789999999998877765421 346889999999999988754 8999999988753211 111
Q ss_pred CCCcCcccceEEEEEecCCCCEEEEE----eCCCeEEEEeCCCCceeccC
Q 006126 596 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK 641 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~sp~d~~~l~s~----s~Dg~v~iw~~~~~~~~w~~ 641 (660)
.+ . -.+..++++|+++.++++. ..+++|.+|++. ++..|..
T Consensus 264 ~~--~--~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 264 FR--D--TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CC--S--SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CC--C--CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 01 1 2244899999667777777 678999999998 8776653
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=3.2e-15 Score=168.23 Aligned_cols=280 Identities=10% Similarity=-0.045 Sum_probs=178.8
Q ss_pred EecCCCCEEEEE--eCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeE---------EEEEe--cCCCE-EEEEEC-CC
Q 006126 269 TSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-TA 333 (660)
Q Consensus 269 ~~spdg~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~---------~~~~s--pdg~~-l~s~s~-dg 333 (660)
.+++++.+++.. +.++...||.... .+....+ .. |...+. ...|+ |||++ |+.++. +.
T Consensus 30 ~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l--~~--~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~ 102 (662)
T 3azo_A 30 GAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESA--LP--APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ 102 (662)
T ss_dssp EEETTEEEEEEEETTTTTEEEEEEECT---TSCEEES--SC--TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred EEcCCeEEEEecCcccCCcEEEEEECC---CCCccee--CC--CCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence 778777677776 5578899999643 2334443 22 445555 56566 99998 776654 44
Q ss_pred cEEEEecc--CCceeeeeeccceeEEEecCCCCceeeeccc--CCCCCCeEEEEEe--CCEEEEEe-C----------Cc
Q 006126 334 THKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-G----------GK 396 (660)
Q Consensus 334 ~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~s--~~~l~s~~-d----------g~ 396 (660)
.|.+|+.. + ++........ ..|...+..++|+ |+.|++++ + ..
T Consensus 103 ~l~~~~~~~~g--------------------~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 103 RLYAFEPDAPG--------------------GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CEEEECTTSTT--------------------CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred eEEEEcCCCCC--------------------CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 55544443 1 0111111100 0156678899999 88888887 5 58
Q ss_pred EEEEECCC------CeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCC--------CeEEEEeCC-CC---ceeeEeeccC
Q 006126 397 ISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKGHQ 456 (660)
Q Consensus 397 I~iwd~~~------~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d--------~~I~iwd~~-~~---~~~~~~~~~~ 456 (660)
|.+||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +......+|.
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 99999988 554 4455 556677889999999 88877754 379999998 56 4444445567
Q ss_pred CCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCC-----CCCeEEEEEecCCcEEEEE-ecC
Q 006126 457 NRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPE-----TTIVNHIQFHPDQIHLLSI-HEG 528 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~-~d~ 528 (660)
..+..+.|+|||+++++++.++ .|.+||+.+++... +..++... ...+.+++|+|++++++++ . +
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee------cccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 8899999999999888888888 56666765643211 11222100 0015678999999988885 5 8
Q ss_pred cEEEE--eCCCCceeeeecCCCCCCCeEEEEEccCCCE--EEEEecCC--eEEEEECCCCeeEEE
Q 006126 529 QIDVY--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG--HVKVFDTSTLELRCQ 587 (660)
Q Consensus 529 ~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~sg~~dg--~I~iwd~~~~~~~~~ 587 (660)
.++|| |+.+++ +..+.. +...+..+ ++++++. +++++.+. .|++||+.+++....
T Consensus 315 ~~~l~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp SCEEEEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred ccEEEEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 88888 665554 555543 35566655 1444543 33444443 567778878875543
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=7.7e-15 Score=149.94 Aligned_cols=261 Identities=11% Similarity=-0.013 Sum_probs=182.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee---eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 385 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-- 385 (660)
-+.|.+++++|+|+.+++.+.++.+.+|+......... .......+.+||..++.++.... .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 56799999999999988888886554444332221100 01112346778877777654332 1345678899999
Q ss_pred CCEEEEEe-CCcEEEEECCCCe-EEEEE---------cCCCCCeEEEEEcC-CC-eEEEEe-CCCeEEEEeCCCCceeeE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~-~~~~~---------~~~~~~v~~v~~sp-~~-~l~s~~-~d~~I~iwd~~~~~~~~~ 451 (660)
|+++++.. ++.|++||..... .+..+ ..+......++++| ++ ++++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77666666 7899999986542 45555 23344678999999 67 667765 689999999 56777776
Q ss_pred eecc----------CCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 452 LKGH----------QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 452 ~~~~----------~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
+... -.....++++|+ +.++++...++.|++||..+++....... ..+. ..+..++|+| +.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~----~~~~---~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH----ASFG---RNVFAISYIP-GF 252 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC----TTTT---TCEEEEEEET-TE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec----cccC---CCcceeeecC-CE
Confidence 6432 234889999998 77777777889999999987654322111 1222 4688999999 43
Q ss_pred EEEE-E-------ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 521 HLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 521 ~l~~-~-------~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.+++ + .+..|++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333 2 234899999999998888742 13466789999999998888888899999999753
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=3.2e-15 Score=168.25 Aligned_cols=285 Identities=12% Similarity=0.006 Sum_probs=183.3
Q ss_pred CCCCeEEEEEecCCCEEEEE--ECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-------
Q 006126 310 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------- 380 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~--s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~------- 380 (660)
|...+..++|++++-++++. +.++...||....+.. ..... .|...+.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~l~---~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--------------------EESAL---PAPWNVRNRVFEYS 78 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--------------------EEESS---CTTCCBCCCGGGTC
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--------------------cceeC---CCCccccccccccC
Confidence 78899999999887777776 4578888997532221 11111 2222222
Q ss_pred --EEEEe----CCE-EEEEe--CCcEEEEECC--CCeEEEEEcC-----CCCCeEEEEEcCCC-eEEEEeCC--------
Q 006126 381 --CFALR----GSH-LFSAS--GGKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD-------- 435 (660)
Q Consensus 381 --~v~~s----~~~-l~s~~--dg~I~iwd~~--~~~~~~~~~~-----~~~~v~~v~~sp~~-~l~s~~~d-------- 435 (660)
...|+ |+. |+.++ +..|.+|++. .......+.. +...+.+++|+||| .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 33333 777 77776 3567777765 2033445554 56678899999999 88888776
Q ss_pred --CeEEEEeCCC------CceeeEee-ccCCCeEEEEEeCCCCEEEEEeCCC--------cEEEEEcC-CCeeeeceeee
Q 006126 436 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADA--------QLCVWDAV-GWKKLCSKFLH 497 (660)
Q Consensus 436 --~~I~iwd~~~------~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~dg--------~i~vwd~~-~~~~~~~~~~~ 497 (660)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|++||+. ++... ...
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~ 234 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR 234 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence 5899999987 554 4455 5567788899999999999887553 79999998 55211 112
Q ss_pred eeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeCCCCceeeeecCCCCC------CCeEEEEEccCCCEEEEE
Q 006126 498 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMD------LPITYATYSCDGKCIYVS 568 (660)
Q Consensus 498 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~dg~~l~sg 568 (660)
.+..++. ..+..++|+|||++++++ .++ .|++||+.+++........... ..+..++|+|++++++++
T Consensus 235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence 1334444 578999999999966665 556 6888887677654433221100 015678999999999999
Q ss_pred ecCCeEEEE--ECCCCeeEEEeecccccCCCCcCcccceEEE-EEecCCCCEEEEEeCCC--eEEEEeCCCCce
Q 006126 569 CKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 637 (660)
Q Consensus 569 ~~dg~I~iw--d~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v-~~sp~d~~~l~s~s~Dg--~v~iw~~~~~~~ 637 (660)
+. +.++|| |+.+++ ...+. ++ ...+. .+ ++++ +.-++++++.+. .|.+|++.+++.
T Consensus 312 ~~-~~~~l~~~d~~~~~-~~~l~-------~~-~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE-LVDAA-------GP-WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp BS-SSCEEEEEETTTTE-EEECC-------SS-CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred Ec-CccEEEEEECCCCc-EEEec-------CC-CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 98 999998 666665 44443 22 22233 44 4433 222344555554 455567767654
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=9.8e-15 Score=144.81 Aligned_cols=253 Identities=9% Similarity=-0.001 Sum_probs=191.6
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEE
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 461 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~ 461 (660)
++.|++++ ++.|.+||.++|+.+.++..+. ..+.++.++|+| .++ +.++.|..||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 56778888 8999999999999999998765 578899999999 666 45788999998 89999888864 357889
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCc
Q 006126 462 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 539 (660)
Q Consensus 462 l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~ 539 (660)
+.+.|+|+.+++.+. ++.+..+|. +++.+....+.....++. .....+++.++|.++++. .++.|..||.. |+
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 999999999999887 778888886 555443333321111111 235567789999999985 78999999997 99
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
.+.++.. ...+.++.+.++|+.+++++.++.|..+|..+|+.+..+..... .+ ..-.++..+...+ +|++++
T Consensus 157 ~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~--~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 157 LLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EG--VQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp EEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BS--CCCSEEEEEEECT-TSCEEE
T ss_pred EEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CC--ccccccccceEcC-CCCEEE
Confidence 9888865 24566788889999999998889999999999999998863211 01 1123355788888 899888
Q ss_pred EEeCC--------CeEEEEeC-CCCceeccCCCCcccccccccc
Q 006126 620 LGLTN--------GRVHVIEP-LESEVEWGKLPFTDSREFSTTF 654 (660)
Q Consensus 620 s~s~D--------g~v~iw~~-~~~~~~w~~~~~~~~~~~~~~~ 654 (660)
+.... +..+++++ .+++..|......+-+..|+++
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 87421 24467777 5788899988888777777663
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=2.9e-14 Score=146.58 Aligned_cols=274 Identities=9% Similarity=0.049 Sum_probs=155.9
Q ss_pred CCCEEEEEe---------CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECC---CcEEEEec
Q 006126 273 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKW 340 (660)
Q Consensus 273 dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~d---g~i~vw~~ 340 (660)
||++++... .++.|.+||+.+ +....+ ..+..++|||||++|+.++.+ +...||
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~-- 88 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIW-- 88 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEE--
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEE--
Confidence 898887653 256788999874 333332 357889999999999987753 332222
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCC
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 417 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~ 417 (660)
+|+..++....... +.. +..++|+ |+.|+.++ +. ..... ...
T Consensus 89 -----------------~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~-------~~~~~-------~~~ 133 (347)
T 2gop_A 89 -----------------VADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKR-------REDED-------FIF 133 (347)
T ss_dssp -----------------EEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECC-------CC-------------
T ss_pred -----------------EEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccC-------CCcCC-------cEE
Confidence 22222222221110 111 4555555 44444443 21 00000 000
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-------cEEEEEcCCCe
Q 006126 418 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWK 489 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-------~i~vwd~~~~~ 489 (660)
+..+.|..+| -+. ......|++||+.+++.+..+.. . .+..+.|+||| ++++++.++ ...+|.+.+++
T Consensus 134 ~~~~~~~~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 134 EDDVPAWFDDLGFF-DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK 209 (347)
T ss_dssp ---CCCC----------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred EcccceeecCcccc-cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence 1111122222 111 11235799999998877455554 3 78899999999 777776542 34444444433
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec--------CcEEEEeCCCCceeeeecCCCCCCCeEE-EEEc
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYS 559 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s 559 (660)
. .. +..+ . .+..+ +|||++|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+
T Consensus 210 ~---~~---l~~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s 272 (347)
T 2gop_A 210 E---EK---MFEK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD 272 (347)
T ss_dssp E---EE---EEEE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET
T ss_pred e---EE---eccC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc
Confidence 2 11 1111 1 34444 999999887 433 3688888 55543 3322 34667876 8999
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeE-EEEeCC
Q 006126 560 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 633 (660)
Q Consensus 560 ~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v-~iw~~~ 633 (660)
|| ++++++.++.++|| +.+++....+. + ...+ .+++|+| .++++++.++.. .||.+.
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v--~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWI--MGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESSSEEEEEC-------S--SSEE--EEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred -Cc-EEEEEecCCcEEEE-EcCCceEEEec-------C--CCeE--EeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 88 88999999999999 87666543332 1 2233 4889988 577777777664 777765
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.67 E-value=3e-14 Score=145.61 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=181.8
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
...|.+++|++++..++..+.++.++.|.- .. |. .+ . .+...+.+++|+ +++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~-----~~---~--~~~~~~~~~~~~~~g~l 58 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITA---EP-------------WL-----EI---S--KKGLQLEGLNFDRQGQL 58 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EE-------------EE-----EE---E--SSCCCEEEEEECTTSCE
T ss_pred ccccceeeecCCccceeEEeecccCccccc---ce-------------eE-----EE---e--ccCccccCcEECCCCCE
Confidence 445788889998887777777888887721 10 10 00 0 355567899998 666
Q ss_pred EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeEee--ccCCCeE
Q 006126 389 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT 460 (660)
Q Consensus 389 l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~~~--~~~~~v~ 460 (660)
++++. ++.|.+||..+++.......+...+.+++++|+| ++++...+ +.|.+||..++.....+. .+...+.
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 66666 7899999999887766554566789999999999 76766666 689999998876553333 2446789
Q ss_pred EEEEeCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEE
Q 006126 461 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV 532 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~i 532 (660)
++.++|+|+++++... .+.|..||..+++.. . +... . ..+..++|+|+|+.++++ .++.|++
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~---~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---P---IIQN-I---SVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---E---EEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE---E---eecC-C---CcccceEECCCCCEEEEEeCCCCeEEE
Confidence 9999999988876654 255666666553321 1 1111 1 357889999999877663 5689999
Q ss_pred EeCCC-Cceeeee------cCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126 533 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 533 wd~~~-~~~~~~~------~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
||+.+ +..+..+ .... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..|| . ..+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~-~--~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH-M--LRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC-S--CBC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc-c--cCc
Confidence 99964 3332211 1111 246788999999998888878899999998 4666665542200 0011 0 123
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 006126 606 LVIAAHPLEPNRIALGLTN 624 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~D 624 (660)
.+++|+| |+..|..++.+
T Consensus 283 ~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 283 THPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CEEEECT-TSCEEEEEEEC
T ss_pred ceEEECC-CCCEEEEEeCc
Confidence 4899999 77666655554
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=5.2e-12 Score=126.36 Aligned_cols=276 Identities=9% Similarity=0.039 Sum_probs=188.2
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
+...+.+++++++|+.+++...++.|.+|+.. +.. ..+. .. .+...+.++++. +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----------~~~~----------~~-~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----------TEYP----------LP-TPDAKVMCLTISSDGE 69 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----------EEEE----------CS-STTCCEEEEEECTTSC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----------EEec----------CC-cccCceeeEEECCCCC
Confidence 56789999999999977766667889888765 322 1111 00 234568889998 66
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEE
Q 006126 388 HLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCL 462 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l 462 (660)
.+++.. ++.|..||.. ++. ..+. .....+.++++.++| .+++...++.|.+||. +++.... ...+...+.++
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 666655 6889999986 443 2232 345678899999999 6666667889999998 5554432 22345678999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCcee
Q 006126 463 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 541 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~ 541 (660)
+++++|+..++...++.|..||. +++... .. ..... ..+..++++++|...++. .++.|.+||. +++..
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITE---FK--IPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee--CCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 99999988887777889999998 543221 11 11122 468899999999876665 5788999999 66643
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 542 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 542 ~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
. +....+...+.+++++++|+++++...++.|.+||. +++.. .+... ++ ... +.++++ + ++.++++.
T Consensus 217 ~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~-----~~-~~~--~~~i~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 217 E-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPIQ-----IK-SAE--PHGICF-D-GETIWFAM 283 (299)
T ss_dssp E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEECS-----SS-SCC--EEEEEE-C-SSCEEEEE
T ss_pred E-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeCC-----CC-CCc--cceEEe-c-CCCEEEEe
Confidence 3 322223577899999999997777667889999998 45432 33211 11 222 447888 7 78877776
Q ss_pred eCCCeEEEEeCCCC
Q 006126 622 LTNGRVHVIEPLES 635 (660)
Q Consensus 622 s~Dg~v~iw~~~~~ 635 (660)
+ .+.|..+++.++
T Consensus 284 ~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 284 E-CDKIGKLTLIKD 296 (299)
T ss_dssp T-TTEEEEEEEC--
T ss_pred c-CCcEEEEEcCcc
Confidence 5 567777777654
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=1.1e-13 Score=143.08 Aligned_cols=225 Identities=8% Similarity=-0.055 Sum_probs=149.5
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCceeeEeecc------C
Q 006126 394 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH------Q 456 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~~~~~~~~------~ 456 (660)
|+.|.+||..+++.+..+..+..+ .++|+||| .++++. .++.|.+||+.+++.+..+... .
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 568999999999998888765544 89999999 777765 3668999999999888777532 2
Q ss_pred CCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeec-eeeeee----eeccCCCCCCeEEEEEecCCc---------
Q 006126 457 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS-KFLHSF----QTGLVPETTIVNHIQFHPDQI--------- 520 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~-~~~~~~----~~~~~~~~~~v~~~~~sp~~~--------- 520 (660)
.....++++|||++|+++.. +++|.+||+.+++.... ...... .... +.-.-++++++|+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN----RPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTT----SSSEEEEEETTSSEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCC----CCeeEEEECCCCcEEEEEECCC
Confidence 45678999999999998864 68999999999765433 211100 0000 0001122222222
Q ss_pred -----------------------------EEEE-EecCcEEEEeCCCCce--eeeecCCC----C----CCCeEEEEEcc
Q 006126 521 -----------------------------HLLS-IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSC 560 (660)
Q Consensus 521 -----------------------------~l~~-~~d~~i~iwd~~~~~~--~~~~~~~~----~----~~~v~~~~~s~ 560 (660)
.++. +.++.|.++|+..... ...+.... + ......++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 2222 2334566666543321 11111000 0 01111268999
Q ss_pred CCCEEEEEec-----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126 561 DGKCIYVSCK-----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 629 (660)
Q Consensus 561 dg~~l~sg~~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i 629 (660)
+++.++++.. .+.|.+||+.+++.+..+... . .+ +++|+| ||++|++++. ++|.+
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--------~--p~--~ia~sp-dg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--------D--AL--SMTIDQ-QRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--------T--CC--EEEEET-TTTEEEEECS-SCEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--------C--ee--EEEECC-CCCEEEEeCC-CeEEE
Confidence 9998887654 348999999999999888742 2 44 899999 8999998887 99999
Q ss_pred EeCCCC--cee
Q 006126 630 IEPLES--EVE 638 (660)
Q Consensus 630 w~~~~~--~~~ 638 (660)
||..++ +..
T Consensus 330 ~D~~t~~l~~~ 340 (361)
T 2oiz_A 330 YDISQPEPKLL 340 (361)
T ss_dssp EECSSSSCEEE
T ss_pred EECCCCcceee
Confidence 999998 653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.7e-13 Score=155.37 Aligned_cols=242 Identities=9% Similarity=-0.032 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CC----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCe-------
Q 006126 374 DPKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 437 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~--dg----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~------- 437 (660)
+|...+..++|+ |++|+.+. +| .|++||+.+++.......+ ..+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 455568899999 88888776 33 8999999999877643222 225679999999 8888887765
Q ss_pred ---------EEEEeCCCCcee--eEeec--cCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEEcCC------Ceeeec
Q 006126 438 ---------ILVHCPCTKKTK--AKLKG--HQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 493 (660)
Q Consensus 438 ---------I~iwd~~~~~~~--~~~~~--~~~~v~~l~~sp~~~~l~s~s~-----dg~i~vwd~~~------~~~~~~ 493 (660)
|++|++.+++.. ..+.. |...+..+.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 999999887632 22332 4566889999999999988765 56899999976 321
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec----CcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEE
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIY 566 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d----~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~ 566 (660)
.+. ....+. ..+.. .|+|+|..|+. +.. ..|.+||+.++.. ...+..+.....+..++|++++.+++
T Consensus 278 -~~~-~l~~~~---~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWV-KLIDNF---EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCE-EEECSS---SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceE-EeeCCC---CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 122 122232 23433 58899998887 432 3699999987642 34444322124688899998888888
Q ss_pred EEecCCe--EEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EEe---CCCeEEEEeCCCCc
Q 006126 567 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 636 (660)
Q Consensus 567 sg~~dg~--I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~s---~Dg~v~iw~~~~~~ 636 (660)
+...|+. |++|++.+|+....+..+ .. .+..++++| ++..++ +.+ ..++|++||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--------~~--~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--------VG--SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--------SS--EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--------Cc--eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 667788778766666531 22 244789999 676555 333 34799999998877
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=9.3e-13 Score=149.26 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=181.8
Q ss_pred cCCCCEEEEEeCCC-c--EEEEeccCcCCCcceeee----ecCCCCCCCCeEEEEEecCCCEEEEEECCC-----cEEEE
Q 006126 271 LPDADSAVCAKSLE-K--SVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLW 338 (660)
Q Consensus 271 spdg~~l~s~~~dg-~--i~iwd~~~~~~~~~~~~~----~l~~~~h~~~V~~~~~spdg~~l~s~s~dg-----~i~vw 338 (660)
+|||++++....++ . -.+|-.... .+....+ .+. .+|...+..++|||||++||.++.++ .|++|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~-~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILS-DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGC-TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhc-cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48888887665442 1 245544321 1111111 111 23455788999999999999876643 67777
Q ss_pred eccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCc----------------EEE
Q 006126 339 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISI 399 (660)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~----------------I~i 399 (660)
|+.+++. ..... ....+..++|+ |+.|+.++ ++. |++
T Consensus 157 d~~tg~~---------------------~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 157 KVDGAKE---------------------LPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp ETTTTEE---------------------EEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred ECCCCCC---------------------Ccccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 7766543 21111 11125678899 77888877 654 999
Q ss_pred EECCCCeE--EEEEc--CCCCCeEEEEEcCCC-eEEEEeC-----CCeEEEEeCCC------Cc-eeeEeeccCCCeEEE
Q 006126 400 FSLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCL 462 (660)
Q Consensus 400 wd~~~~~~--~~~~~--~~~~~v~~v~~sp~~-~l~s~~~-----d~~I~iwd~~~------~~-~~~~~~~~~~~v~~l 462 (660)
|++.+++. ...+. .+...+..+.|+||| .|+.++. +..|++||+.+ +. ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 99988762 22233 345567899999999 7666654 56899999986 43 45666666666655
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeC
Q 006126 463 AYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA 535 (660)
Q Consensus 463 ~~sp~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~ 535 (660)
.|+|+|+.|+..+.++ .|.+||+.++... ....+...+.. ..+..++|++++.++++. .++ .|++||+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 4889999887776543 5999999875311 11212222221 257789999777777764 565 5778888
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec----CCeEEEEECCCCe
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLE 583 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~----dg~I~iwd~~~~~ 583 (660)
.+++.+..+.. +...+..++++|+++.++.... .+.|++||+.+++
T Consensus 367 ~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 367 ATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 77887777754 3677888999999987664432 4789999999887
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=1.8e-12 Score=141.14 Aligned_cols=299 Identities=14% Similarity=0.095 Sum_probs=192.0
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe----cCCCEEEEEEC-CCcEEEEecc
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQ 341 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s----pdg~~l~s~s~-dg~i~vw~~~ 341 (660)
.+.|||||+++++++.|+.|.+||+.... ......+. .......++|+ |||++++++.. ++++.|+|..
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~-----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIK-----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEe-----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 45899999999999999999999994100 22333332 14457899999 69999988877 5899999876
Q ss_pred CCceeeeeeccceeEEEecCCCCceeeecccCCC-CCCeEEEEEe--CCEE-EEEe-CCcEEEEECCCCeEEEEEc-CCC
Q 006126 342 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFA-NPP 415 (660)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s--~~~l-~s~~-dg~I~iwd~~~~~~~~~~~-~~~ 415 (660)
+.+.... .... +.... ..+.| ...+..+..+ +..+ +... +|.|.++|..+.+...... ...
T Consensus 275 t~~~~~~----------i~~~-~~~~~--~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~ 341 (567)
T 1qks_A 275 TLEPKKI----------QSTR-GMTYD--EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 341 (567)
T ss_dssp TCCEEEE----------EECC-EECTT--TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred CCcEEEE----------Eecc-ccccc--cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence 6554211 0000 00000 00002 2256777777 4444 4444 6999999998754332211 234
Q ss_pred CCeEEEEEcCCC-eEEE-EeCCCeEEEEeCCCCceeeEeec-----cCCCeEEEEEeCCCCEEE-EEe-CCCcEEEEEcC
Q 006126 416 PIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNVLV-SSG-ADAQLCVWDAV 486 (660)
Q Consensus 416 ~~v~~v~~sp~~-~l~s-~~~d~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~-s~s-~dg~i~vwd~~ 486 (660)
....++.|+|+| ++++ ...++.|.++|+.+++.+..+.. |.+.--.+ ++|++..+. ++. .+++|.++|..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence 456788999999 6554 44678999999999987766643 33222222 688755544 443 46899999998
Q ss_pred CCee--eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------cCcEEEEeCCCC-----ce-eeeecC----
Q 006126 487 GWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL-----NH-TSQLVP---- 546 (660)
Q Consensus 487 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------d~~i~iwd~~~~-----~~-~~~~~~---- 546 (660)
++.. ...+.++++... . ..-..+..+|+++++.+.. .++|.++|+.+. .. ...+..
T Consensus 421 ~~~~~~~~~kvv~~i~~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPAL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp TTTCTTTBTSEEEEEECS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred CCCCccccCEEEEEEecC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 7211 001222322211 1 1223477899999999853 469999999876 21 122211
Q ss_pred --CCCCCCeEEEEEccCCCEEEEEec-----CCeEEEEECCCCeeEEEee
Q 006126 547 --DKMDLPITYATYSCDGKCIYVSCK-----SGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 547 --~~~~~~v~~~~~s~dg~~l~sg~~-----dg~I~iwd~~~~~~~~~~~ 589 (660)
......+..+.|+|+|+++..+.+ ++.|.|+|..+++++..+.
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 112457889999999998887744 6999999999999988876
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=3.7e-14 Score=160.31 Aligned_cols=240 Identities=9% Similarity=-0.019 Sum_probs=159.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCC-eEEEEeCCCe------
Q 006126 374 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSS------ 437 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~--d----g~I~iwd~~~~~~~-~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~------ 437 (660)
+|...+..++|+ |++|+.+. + ..|++||+.+++.+ ... ........++|+||| .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 466678899999 88888543 2 57999999998865 211 111112578999999 8888888766
Q ss_pred -------EEEEeCCCCce----eeEeeccCCCeEEEEEeCCCCEEEEEeCCC----cEEEEEcCCCeeeeceeeeeeeec
Q 006126 438 -------ILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 438 -------I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
|++|++.+++. +.....+...+.++.|+|||++|+.++.++ .|++||..++. ...+. .
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~-~ 269 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLV-K 269 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEE-E
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEee-c
Confidence 99999988762 223334556889999999999998887666 67777665432 12122 2
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEE
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 575 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~ 575 (660)
+. ..+....+ ++|. ++. +. ++.|.+||+.++.. ...+........+..++|+ ++.++++...|+..+
T Consensus 270 ~~---~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 270 GV---GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp CS---SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred CC---CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 22 24555556 6677 555 43 47899999987653 2334332224567888888 778888999999888
Q ss_pred EEECC-CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE-EE---eCCCeEEEEeCCCCce
Q 006126 576 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LG---LTNGRVHVIEPLESEV 637 (660)
Q Consensus 576 iwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~-s~---s~Dg~v~iw~~~~~~~ 637 (660)
||.+. +++....+..+ .... +..++++| ++..++ +. ..+++|++||+.+++.
T Consensus 344 l~~~~~~g~~~~~l~~~-------~~~~--v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLP-------GVGA--ASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCCS-------SSSE--ECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecCC-------CCeE--EEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 87654 35444444321 1222 33788899 777665 22 2357899999988765
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=6.4e-14 Score=158.35 Aligned_cols=281 Identities=10% Similarity=-0.073 Sum_probs=176.3
Q ss_pred EecCCCCEEEEEeCCC---cEEEEeccCcCCCcceeeee-c--CCCCCCCCeEEEEEecCCCEEEEEE-----CCCcEEE
Q 006126 269 TSLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLL-L--PDNSFGGRVVRLIYSHSGDFLVALT-----QTATHKL 337 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~-l--~~~~h~~~V~~~~~spdg~~l~s~s-----~dg~i~v 337 (660)
..+|||++++....++ .-.+|..... .+....+. . ...+|...+..++|||||++||.+. .+..|++
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 4458999888777654 3556655421 12222221 1 1123666799999999999998543 3457888
Q ss_pred EeccCCceeeeeeccceeEEEecCCCCcee-eecccCCCCCCeEEEEEe--CCEEEEEe-CCc-------------EEEE
Q 006126 338 WKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS-GGK-------------ISIF 400 (660)
Q Consensus 338 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~-------------I~iw 400 (660)
||+.+++. + .... .......++|+ |+.|+.++ +.. |++|
T Consensus 152 ~dl~tg~~---------------------~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 152 IDVDSGEW---------------------SKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp EETTTCCB---------------------CSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred EECCCCCC---------------------cCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 88766643 1 1000 01112578899 78888887 665 9999
Q ss_pred ECCCCe----EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC----eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 401 SLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 401 d~~~~~----~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~----~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
++.++. .+.....+...+..+.|+||| .|+.++.++ .|++||..+++ ...+..+...+....+ ++|.++
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEE
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEE
Confidence 998876 222223455678899999999 777666555 78888766554 4445555556666666 566644
Q ss_pred EEEe---CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceeeeecC
Q 006126 472 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVP 546 (660)
Q Consensus 472 ~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~ 546 (660)
+... .++.|.+||+.++... ....+...+.. ..+..++|+ ++.++++ ..|+..++|.+. +++....+..
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 359 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARA---SWKEIVPEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL 359 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGG---GCEEEECCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred EEECCCCCCCEEEEEeCCCCCcc---CCeEEecCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence 4433 2578999999875321 11212222211 457888888 5666666 477776666543 4555555543
Q ss_pred CCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEECCCCee
Q 006126 547 DKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 584 (660)
Q Consensus 547 ~~~~~~v~~~~~s~dg~~l~sg~----~dg~I~iwd~~~~~~ 584 (660)
+ ....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 360 ~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 360 P-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp S-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2 256677888999998777433 347899999998874
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.59 E-value=1.3e-12 Score=133.47 Aligned_cols=265 Identities=10% Similarity=0.027 Sum_probs=177.4
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeee
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 348 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~ 348 (660)
.|+|++..++..+.++.++.|.. ..... +.. +...+.+++|+|+|+.++++..++.|.+|+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--- 78 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTITA------EPWLE--ISK--KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--- 78 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEEC------EEEEE--EES--SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---
T ss_pred eecCCccceeEEeecccCccccc------ceeEE--Eec--cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---
Confidence 66777777777777888888832 22332 222 566789999999999777788889998887765543
Q ss_pred eeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-C----CcEEEEECCCCeEEEEEc--CCCCCeE
Q 006126 349 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIAT 419 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-d----g~I~iwd~~~~~~~~~~~--~~~~~v~ 419 (660)
..... .+...+.+++++ ++++++.. + +.|.+||..++.....+. .+...+.
T Consensus 79 ------------------~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 79 ------------------KRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp ------------------EEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred ------------------EEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 11110 245679999998 66666665 4 589999998876654443 3445789
Q ss_pred EEEEcCCC-eEEEEeC------CCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC-Cee
Q 006126 420 YFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG-WKK 490 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~-~~~ 490 (660)
+++++|+| .+++... .+.|..+|..+++... +..+...+..++|+|+|+.++. .+.++.|.+||+.+ +..
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 99999999 5555543 3567777776555433 3333446789999999986654 45678999999964 221
Q ss_pred eece--eeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC----CCCCeEEEEEccCCC
Q 006126 491 LCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGK 563 (660)
Q Consensus 491 ~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~ 563 (660)
.... .......++ ..+..++++++|+++++. .++.|.+||. +++.+..+.... +...+.+++|+||++
T Consensus 218 ~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 218 IQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp EEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred cccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence 1110 000001111 257789999999977774 5689999998 577666664321 112588999999998
Q ss_pred EEEEEecCC
Q 006126 564 CIYVSCKSG 572 (660)
Q Consensus 564 ~l~sg~~dg 572 (660)
.|+.++.++
T Consensus 293 ~L~v~~~~g 301 (333)
T 2dg1_A 293 QLIICSNDI 301 (333)
T ss_dssp EEEEEEECG
T ss_pred EEEEEeCcc
Confidence 887766653
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=7.2e-13 Score=132.96 Aligned_cols=231 Identities=11% Similarity=-0.044 Sum_probs=162.3
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 375 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 375 h~~~v~~v~~s--~~-~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
+.....+++|+ ++ +++++. ++.|..||..++ ...+..+...+.+++++|+| ++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45567899999 66 566666 799999999887 66676777889999999999 7777667789999999888754
Q ss_pred eEeecc----CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126 450 AKLKGH----QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 508 (660)
Q Consensus 450 ~~~~~~----~~~v~~l~~sp~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 508 (660)
...... ...+..++++|+|+++++.+. .+.|..+|.. ++. . ....+. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~------~-~~~~~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL------S-APIRDR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE------E-EEECCC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE------E-EeecCC---C
Confidence 433221 235678999999998887321 2355555544 221 1 112222 4
Q ss_pred CeEEEEEecCCcEEEEE-ecCcEEEEeCC-CCce---eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 509 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
....++|+|+|+.+++. .++.|++||+. ++.. ...+ . .+...+..++++++|+++++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 67899999999999554 67899999986 5554 2333 2 235567789999999977666 8899999987 77
Q ss_pred eEEEeecccccCCCCcCcccceEEEEE-ecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 584 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 584 ~~~~~~~~~~~~~gh~~~~v~~~~v~~-sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.+..+..+ .. +.+++| +| +++.|.+++.++ +.-+++.+.+
T Consensus 248 ~~~~~~~~--------~~---~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 248 ELGRVLTP--------QT---TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp EEEEEECS--------SC---CCEEEEEST-TSCEEEEEETTE-EEEEECSCCB
T ss_pred EEEEEECC--------CC---ceeEEEECC-CCCEEEEEcCCe-EEEEEccccc
Confidence 66666532 22 338889 47 788888888764 4445555443
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=2.5e-12 Score=131.14 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=179.9
Q ss_pred CCCcEEEEeccCcCCCcceeeeec---CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEE
Q 006126 282 SLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 358 (660)
Q Consensus 282 ~dg~i~iwd~~~~~~~~~~~~~~l---~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 358 (660)
.+++|.+||.++ .++....+ ...........+++. +++..++...++.|.+||..+.+.
T Consensus 15 ~~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~------------- 76 (328)
T 3dsm_A 15 SNATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE------------- 76 (328)
T ss_dssp CCBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-------------
T ss_pred CCceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-------------
Confidence 378999999984 44332111 011123456778874 344445555578888887766543
Q ss_pred ecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCeEE
Q 006126 359 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDLFA 430 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~-----~~v~~v~~sp~~~l~ 430 (660)
+... ........++++ +..+..+. ++.|.+||..+++....+.... .....+++ .++.++
T Consensus 77 --------~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 77 --------VGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp --------EEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred --------EEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence 2211 123557889996 44555555 7999999999999887776332 13446666 444444
Q ss_pred EEe--CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEcCCCeeeeceeeee
Q 006126 431 FGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 431 s~~--~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~ 498 (660)
++. .++.|.++|+.+++.+..+.. ......+.++|+|++++++..+ +.|.+||..+++......+
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-- 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-- 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec--
Confidence 444 488999999999988887764 3345788899999877766554 7899999998654322111
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc-CCCEEEEE----ecCCe
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVS----CKSGH 573 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~sg----~~dg~ 573 (660)
..+ .....++++|+++.++++.. .|.+||..+++................++++| ++...++. ..++.
T Consensus 222 -~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 222 -KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp -CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred -CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 111 35789999999999988644 99999998887642211111146788999999 45555555 56789
Q ss_pred EEEEECCCCeeEEEeec
Q 006126 574 VKVFDTSTLELRCQINL 590 (660)
Q Consensus 574 I~iwd~~~~~~~~~~~~ 590 (660)
|.+||.. ++.+..+..
T Consensus 295 V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEEECTT-CCEEEEEEE
T ss_pred EEEECCC-CCEEEEEEe
Confidence 9999998 888888763
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=5e-11 Score=119.13 Aligned_cols=273 Identities=7% Similarity=-0.024 Sum_probs=187.4
Q ss_pred eeeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCce
Q 006126 266 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 345 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~ 345 (660)
..+.+.++|+..++...++.|..||.. +....+.++. +...+.+++++++|...++...++.|..|+.. +..
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 334788999988877778999999975 3344433332 45789999999999977776667888888764 211
Q ss_pred eeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEE
Q 006126 346 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYF 421 (660)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v 421 (660)
..+.. . .....+.++++. +.++++.. ++.|..||. +++.... .......+..+
T Consensus 90 -----------~~~~~----------~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 90 -----------KEYTL----------P-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp -----------EEEEC----------S-STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred -----------EEEeC----------C-CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 11110 0 134567888888 55555555 689999998 5554433 22345678899
Q ss_pred EEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeee
Q 006126 422 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 422 ~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 499 (660)
++.++| ..++...++.|..||. +++.... +......+.+++++++|+..++...++.|.+||. ++.... +.
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-- 219 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK-- 219 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE--
Confidence 999999 6666666789999998 6665432 2334567889999999998777767889999999 644211 11
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
...+. ..+.+++++++|+..++. .++.|..||. ++. +..+....+...+.++++ ++|.+.++.. .+.|..++
T Consensus 220 ~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 220 IPTPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp CSSTT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred CCCCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 11222 468899999999866665 6789999998 454 334432233567899999 8888777655 56788888
Q ss_pred CCCCe
Q 006126 579 TSTLE 583 (660)
Q Consensus 579 ~~~~~ 583 (660)
..+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 77654
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1.9e-12 Score=129.85 Aligned_cols=235 Identities=10% Similarity=0.035 Sum_probs=166.2
Q ss_pred CCCCeEEEEEecCCC-EEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~-~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
+.....+++|+|+|+ .++++..++.|..|+..++ . ..+. .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence 456788999999998 6677777889988876554 2 1111 355668899998 6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEE----e-------------CCCeEEEEeC
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFG----F-------------DDSSILVHCP 443 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~----~-------------~d~~I~iwd~ 443 (660)
.++++.. ++.|.+||..+++........ ...+..++++|+| ++++. + ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 6666555 689999999888765443321 2345679999999 66663 2 1346777776
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC-CCee-eeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 521 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 521 (660)
. ++ ...+..+......++|+|+|+.+++.+.++.|.+||+. ++.. ... . ....+. ..+..++++++|++
T Consensus 161 ~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~---~-~~~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQG---V-HFTVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEE---E-EECCSS---SCCCSEEEBTTSCE
T ss_pred C-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCC---e-EeeCCC---CCCCeEEECCCCCE
Confidence 5 44 34455566778999999999999777778999999997 4332 111 1 111222 45678999999987
Q ss_pred EEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEE-ccCCCEEEEEecCCeEEEEECCCCee
Q 006126 522 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLEL 584 (660)
Q Consensus 522 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~dg~~l~sg~~dg~I~iwd~~~~~~ 584 (660)
.++. ++.|.+||.. ++.+..+... .. +.+++| +|+++.|++++.+ .+.-++..+.++
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 7667 8899999985 7777777653 44 889999 5899999988875 466667766654
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.56 E-value=3.3e-12 Score=130.54 Aligned_cols=281 Identities=13% Similarity=0.076 Sum_probs=186.9
Q ss_pred EecCCCCEEEEEeC-----CCcEEEEeccCcCCCcce-eeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CC
Q 006126 269 TSLPDADSAVCAKS-----LEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QT 332 (660)
Q Consensus 269 ~~spdg~~l~s~~~-----dg~i~iwd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~d 332 (660)
...||++.++.... ++.|.+.|..+ .+. ..+.. -..+ .++++|||++++.+. .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~I~v----G~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGMIDG----GFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEEEEE----CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCC----CeEEEEEEC----CCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 56799998888765 67899999874 333 33221 1223 499999999887765 24
Q ss_pred CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCC-----CCCCeEEEEEe--CCEEEEEe---CCcEEEEEC
Q 006126 333 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSL 402 (660)
Q Consensus 333 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~ 402 (660)
+.|.+||..+.+. +....... .......++++ |++++++. ++.|.++|+
T Consensus 109 ~~VsviD~~t~~v---------------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 109 DYVEVFDPVTLLP---------------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEEEECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CEEEEEECCCCeE---------------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 6677777665543 22111100 11234567888 88877775 478999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeecc----CCCeE-EEEEe-CCCCEEEE
Q 006126 403 ETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVS 473 (660)
Q Consensus 403 ~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~----~~~v~-~l~~s-p~~~~l~s 473 (660)
.+++.+.++.... |..+.|.+ .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++
T Consensus 168 ~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 168 EGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp TTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred CCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 9999999886432 22334544 777888899999999876 5543222111 12222 23564 5775444
Q ss_pred EeCCCcEEEEEcCCCeeeeceeee--e---eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCC
Q 006126 474 SGADAQLCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPT 537 (660)
Q Consensus 474 ~s~dg~i~vwd~~~~~~~~~~~~~--~---~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~ 537 (660)
.+.+|.+.+.|+.++.......+. . ...+-.+ .....++++|+++.+++. . .+.|.++|+.+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 667899999999775421111111 0 0011111 234468889999998884 2 25799999999
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~~~ 590 (660)
++.+..+.. ...+.++++++|++ +|++.. .++.|.++|..+++.+..+..
T Consensus 321 ~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 321 GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp CCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred CeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 999999876 45788999999997 676654 489999999999999998875
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.9e-12 Score=127.73 Aligned_cols=236 Identities=12% Similarity=0.034 Sum_probs=162.0
Q ss_pred CeEEEEEe--CCEEEEE-e-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 378 SISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~-~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
...+++++ +++++++ . ++.|.+||..++............+.+++++++| .+++.. ++.|.+||...+.. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 67888998 6655524 4 6899999986654332222333567789999999 555555 88999999876543 333
Q ss_pred e-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcE
Q 006126 453 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 530 (660)
Q Consensus 453 ~-~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i 530 (660)
. .....+.+++++++|+.+++...++.|.+||..+.... . ...... ..+..++++|+|+.+++. .++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----V-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-----E-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-----e-eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 2 23357899999999998887777899999976553211 1 111111 357789999999866664 56899
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEE
Q 006126 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 610 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~ 610 (660)
.+||............ +...+..++++++|.++++...++.|.+|+........ ... ++ . -.+.++++
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~------~~-~--~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF------TG-L--NTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC------CS-C--SCEEEEEE
T ss_pred EEEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc------CC-C--CCceeEEE
Confidence 9999876654333221 23678899999999877777778899999987654332 111 11 1 12448999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 611 HPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 611 sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+| +|+++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 99 789999999999999999987643
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=6.2e-11 Score=122.63 Aligned_cols=283 Identities=8% Similarity=-0.008 Sum_probs=185.1
Q ss_pred EecCCCCEEEEEeC--CC---cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEEC----------CC
Q 006126 269 TSLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TA 333 (660)
Q Consensus 269 ~~spdg~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~----------dg 333 (660)
...|++++++.+.. .. +|.++|..+ .+... +++. -..+ .++|||||++++.+.. ++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILG-HVNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCC----CeEEE-EecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 34578887777664 23 789999874 33332 2332 1223 9999999999988862 56
Q ss_pred cEEEEeccCCceeeeeeccceeEEEecCC-CCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeE
Q 006126 334 THKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQT 407 (660)
Q Consensus 334 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~ 407 (660)
.|.+||..+.+.... .... .+.. .+......+.|+ |++|++++ ++.|.++| .+++.
T Consensus 98 ~v~viD~~t~~~~~~----------i~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 98 YVEVFDPVTFLPIAD----------IELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS 159 (373)
T ss_pred eEEEEECCCCcEEEE----------EECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE
Confidence 788888765543111 0000 0000 011234578888 88888776 36899999 99998
Q ss_pred EEE-EcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEee-----ccCCCe-EEEEEeCCCCEEEEEeCCC
Q 006126 408 LAT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRI-TCLAYSLSLNVLVSSGADA 478 (660)
Q Consensus 408 ~~~-~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~-----~~~~~v-~~l~~sp~~~~l~s~s~dg 478 (660)
+.. +.... ++.+.|++ .+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+..+
T Consensus 160 ~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 234 (373)
T 2mad_H 160 DDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG 234 (373)
T ss_pred EeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc
Confidence 887 65322 35566776 6677788999999999 887663322 111221 2345677666655556788
Q ss_pred cEEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceee
Q 006126 479 QLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTS 542 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~ 542 (660)
.+.+.|+.+........+.. ...+..+ .....+.++|+++.+++. . ++.|.++|+.+++.+.
T Consensus 235 ~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 235 KILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred eEEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 99999997643211111110 0001111 234558899999988874 2 2579999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126 543 QLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~ 588 (660)
++.. .....+++|+|||+ .++++. .++.|.+||+.+++.+..+
T Consensus 313 ~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 313 QISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8865 44688999999999 777776 4899999999999988774
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=1.6e-12 Score=147.92 Aligned_cols=282 Identities=13% Similarity=0.010 Sum_probs=171.4
Q ss_pred EecCCCCEEEEEeCCCc---EEEEeccCcC-CCcceeee-ec--CCCCCCCCeEEEEEecCCCEEEEEECC-C----cEE
Q 006126 269 TSLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTL-LL--PDNSFGGRVVRLIYSHSGDFLVALTQT-A----THK 336 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~---i~iwd~~~~~-~~~~~~~~-~l--~~~~h~~~V~~~~~spdg~~l~s~s~d-g----~i~ 336 (660)
..+|||++++....++. -.+|...... ..+....+ .. -..+|...+..++|||||++||.++.+ | .|+
T Consensus 113 ~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 44589999887776543 6677654210 00111211 00 012244578899999999999987764 3 477
Q ss_pred EEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CC--------------cEEEE
Q 006126 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISIF 400 (660)
Q Consensus 337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg--------------~I~iw 400 (660)
+||+.+++. +.... +...+..++|+ ++.|+.+. ++ .|++|
T Consensus 193 v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 193 FVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp EEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred EEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence 777766653 11100 11112345676 55566555 43 38999
Q ss_pred ECCCCeE--EEEEcC--CCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCC--ceeeEeeccCCCeEEEEEeCCC
Q 006126 401 SLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL 468 (660)
Q Consensus 401 d~~~~~~--~~~~~~--~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~ 468 (660)
++.++.. ...+.. +...+..+.|+||| .|+..+.+ ..|++||+.++ +....+..+...+... ++|+|
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg 327 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG 327 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence 9987652 223332 33458899999999 77666644 38999999877 3145565555555555 45899
Q ss_pred CEEEEEeCC----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCC-CCceee
Q 006126 469 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS 542 (660)
Q Consensus 469 ~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~ 542 (660)
+.|+..+.+ +.|.+||+.++. .....+...+. ..+..+.++ ++.++++ ..++..+||.+. +++...
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 988887764 459999998742 01121333333 456677787 4555555 467765555433 466566
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEe----cCCeEEEEECCCCee
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 584 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~----~dg~I~iwd~~~~~~ 584 (660)
.+..+ +...+..++++|+++.++... ..+.|++||+.+++.
T Consensus 400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 65432 256788899999998666332 347899999998873
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=3.9e-12 Score=125.44 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=162.2
Q ss_pred CeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 313 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 313 ~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
...+++++++|+.++ +.+.++.|.+|+..+... ..+. ..+...+.+++++ +. +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~------------~~~~~~p~~i~~~~~g~-l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP------------FNGLYQPQGLAVDGAGT-V 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECC------------CCSCCSCCCEEECTTCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceEe------------eCCcCCcceeEECCCCC-E
Confidence 788999999999666 446678898887544322 0000 0233456788888 55 4
Q ss_pred EEEe-CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC
Q 006126 390 FSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 466 (660)
Q Consensus 390 ~s~~-dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 466 (660)
+.+. ++.|.+||....... .+. .....+..++++++| .+++...++.|.+|+..+.............+.++++++
T Consensus 81 ~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp EEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred EEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence 4444 889999998765433 333 333568899999999 777777788999998665543322222334678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeec
Q 006126 467 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 467 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 545 (660)
+|+.+++...++.|.+||..+..... ....+. ..+..++++++|..+++. .++.|.+||....... ...
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~------~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~ 229 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVV------LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP 229 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEE------CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECC
T ss_pred CCCEEEEECCCCEEEEEecCCCceEe------ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eec
Confidence 99977777778899999988743211 111121 368899999999766665 5789999998654432 222
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCe
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 583 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~ 583 (660)
. .+...+.+++++++|+++++...++.|++|++...+
T Consensus 230 ~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 230 F-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp C-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred c-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 123578999999999988888889999999987654
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=2.3e-10 Score=114.35 Aligned_cols=283 Identities=8% Similarity=0.006 Sum_probs=189.0
Q ss_pred eeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCe
Q 006126 300 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 379 (660)
Q Consensus 300 ~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 379 (660)
+..+.++. ....+.++++.++|+..++...++.|.+|+.. +.. ..+. .. .+...+
T Consensus 10 ~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------~~~~----------~~-~~~~~~ 64 (300)
T 2qc5_A 10 LEEFNLSI--PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------KEFE----------VP-TPDAKV 64 (300)
T ss_dssp EEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------EEEE----------CS-STTCCE
T ss_pred EEEEecCC--CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------EEEE----------CC-CCCCcc
Confidence 33444443 46789999999999977776678889888765 322 1111 10 233568
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-ee
Q 006126 380 SCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LK 453 (660)
Q Consensus 380 ~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~ 453 (660)
.++++. +..+++.. ++.|..||.. ++.... .......+.++++.++| ++++...++.|..+|.. ++.... +.
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 142 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP 142 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence 888888 55555555 6889999988 655322 22244678899999999 66666668899999987 655422 23
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEE
Q 006126 454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 532 (660)
Q Consensus 454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~i 532 (660)
.....+.++++.++|+..++...++.|..||. +++... +. ...+. ..+..++++++|...++. ..+.|.+
T Consensus 143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP--LPTNA---AAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee--CCCCC---CCcceEEECCCCCEEEEccCCCEEEE
Confidence 34567899999999997776666789999998 433211 11 11222 468899999999877775 5678999
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
||. +++....... .....+.+++++++|++.++...++.|..|+. +++.. .+... .+ ... +.++++.|
T Consensus 214 ~~~-~g~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~----~~--~~~--~~~i~~~~ 281 (300)
T 2qc5_A 214 ITT-TGEISEYDIP-TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ----TE--NAE--PHGITFGK 281 (300)
T ss_dssp ECT-TCCEEEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC----ST--TCC--CCCEEECT
T ss_pred EcC-CCcEEEEECC-CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC----cc--CCc--cceeEeCC
Confidence 998 5554433222 23567899999999997777666789999998 45433 22211 01 122 33788999
Q ss_pred CCCCEEEEEeCCCeEEEEeCC
Q 006126 613 LEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+|.++++.. . .|..+++.
T Consensus 282 -~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 282 -DGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp -TSCEEEECS-S-EEEEEEEC
T ss_pred -CCCEEEEcc-C-ceEEeCCC
Confidence 788766654 4 67777653
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=6e-12 Score=124.62 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=172.0
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CCeEEEEEe--CCEEEEEeCCcEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKIS 398 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~v~~s--~~~l~s~~dg~I~ 398 (660)
.++.|++++.|+.|.+||.++++. +|.... +. ..+.++.+. |++++ +.++.|.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~------------~w~~~~-----------~~~~~~~~~~~~pdG~ilv-s~~~~V~ 59 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI------------VWEYPL-----------EKGWECNSVAATKAGEILF-SYSKGAK 59 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE------------EEEEEC-----------CTTCCCCEEEECTTSCEEE-ECBSEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE------------EEEeCC-----------CccCCCcCeEECCCCCEEE-eCCCCEE
Confidence 457889999999999998877764 454221 22 356777887 77777 4478899
Q ss_pred EEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeC-CCeEEEEeCCCCceeeEeec------cCCCeEEEEEeCCCC
Q 006126 399 IFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLN 469 (660)
Q Consensus 399 iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~-d~~I~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~ 469 (660)
.||. +|+.+..+..+ ...+.++.+.++| .+++.+. ++.|..+|. +|+.+..+.. +......+.+.++|+
T Consensus 60 ~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~ 137 (276)
T 3no2_A 60 MITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN 137 (276)
T ss_dssp EECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC
T ss_pred EECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC
Confidence 9999 89999998865 3578899999999 8888777 788888886 6777766642 223455667899999
Q ss_pred EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCC
Q 006126 470 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 548 (660)
Q Consensus 470 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 548 (660)
++++.+.++.|..||.. |+.+...... ..+.++.+.++|..++++ .++.|..+|..+|+.+.++....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLS----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECS----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECC----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence 99999999999999998 6654332221 345678889999999885 56689999999999988875321
Q ss_pred ----CCCCeEEEEEccCCCEEEEEecC--------CeEEEEEC-CCCeeEEEeec
Q 006126 549 ----MDLPITYATYSCDGKCIYVSCKS--------GHVKVFDT-STLELRCQINL 590 (660)
Q Consensus 549 ----~~~~v~~~~~s~dg~~l~sg~~d--------g~I~iwd~-~~~~~~~~~~~ 590 (660)
.-..+..++..++|..+++.... +..+++++ .+|+.+..+..
T Consensus 207 ~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 207 IEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp SBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 12337888899999998887421 24466766 57888888764
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.49 E-value=1.5e-10 Score=119.71 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=159.5
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEECCCCeEEEEEcCC-------CCCeEEEEEcCCC-eEEEEeC--CCe
Q 006126 381 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 437 (660)
Q Consensus 381 ~v~~s--~~~l~s~~-----------dg~I~iwd~~~~~~~~~~~~~-------~~~v~~v~~sp~~-~l~s~~~--d~~ 437 (660)
.++++ +++++.+. ++.|.+||..+++.+.++... ...-..+.|+||| +|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 78888 77777764 467999999998888776532 1234578999999 7777764 578
Q ss_pred EEEEeCCCCceeeE-eeccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEE
Q 006126 438 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 515 (660)
Q Consensus 438 I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 515 (660)
|.++| .+++.+.. +.. .+ ++.+.|++ +.+++.+.||.+.++|. +++............+.. .......+
T Consensus 150 v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~~ 220 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPAQ 220 (373)
T ss_pred EEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeeccee
Confidence 99999 99988877 542 22 24455655 45667778999999999 765432111100111111 11233556
Q ss_pred ecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCC--------CCCCeEEEEEccCCCEEEEEec----------CCeE
Q 006126 516 HPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGHV 574 (660)
Q Consensus 516 sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~sg~~----------dg~I 574 (660)
.+++..++. +.++.+.+.|+..+. .+..+.... .......+.++||++.++++.. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 776655444 677899999986543 222221100 0122444789999998887653 3579
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCcee
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 638 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~~~ 638 (660)
.++|+.+++.+..+.. | ...+ +++|+| ||+ .++++. .++.|.+||..+++..
T Consensus 301 ~VID~~t~~vv~~i~~------g---~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------G---HDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEECCCCEEEEEEEC------C---CCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 9999999999888864 2 2233 899999 888 677776 5899999999998764
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=3.1e-11 Score=121.81 Aligned_cols=234 Identities=12% Similarity=0.052 Sum_probs=160.4
Q ss_pred CCCeEEEEEe--CCEEEE-------Ee-CCcEEEEECCCCeEEEEEc----CCCCCeEEEEEcCC-CeEEEEeCCCeEEE
Q 006126 376 KDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSILV 440 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s-------~~-dg~I~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~-~~l~s~~~d~~I~i 440 (660)
-....+++|+ +..+++ +. ++.|.+||..+++...... ++...+.+++++++ |.+..++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3456788998 666666 34 8899999998887643322 24467889999999 74444554558999
Q ss_pred EeCCCCceeeE-eec----cCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEEcCCCeeeeceeeeeee
Q 006126 441 HCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 441 wd~~~~~~~~~-~~~----~~~~v~~l~~sp~~~~l~s~s~d---------------g~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
||.. ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++.. . ..
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~---~---~~ 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI---Q---VD 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE---E---EE
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE---E---ec
Confidence 9988 765433 221 12458899999999888776654 567777765 3321 1 11
Q ss_pred eccCCCCCCeEEEEEe----cCCcEEEEE--ecCcEEEEeCC-CCce-----eeeecCCCCC-CCeEEEEEccCCCEEEE
Q 006126 501 TGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIYV 567 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~s----p~~~~l~~~--~d~~i~iwd~~-~~~~-----~~~~~~~~~~-~~v~~~~~s~dg~~l~s 567 (660)
. +. .....++++ |+++.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|+++++
T Consensus 169 ~-~~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 T-AF---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp E-EE---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEE
T ss_pred c-CC---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEE
Confidence 1 11 356789999 999876663 56899999986 4432 22221 122 56788999999998888
Q ss_pred EecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEeCCCeEEEEeCCC
Q 006126 568 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 568 g~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s~Dg~v~iw~~~~ 634 (660)
...++.|.+||..+++....+..+ .. .+.+++|+| +++ ++++...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~~~--------~~--~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIRCP--------FE--KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEECS--------SS--CEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEEEeCC--------CC--CceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 888899999999878766655421 22 244899999 788 455555678999999875
No 202
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=6.1e-12 Score=129.09 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=142.4
Q ss_pred eEEEEEeCCEEEEEe----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---C--eEEEEe
Q 006126 379 ISCFALRGSHLFSAS----------GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S--SILVHC 442 (660)
Q Consensus 379 v~~v~~s~~~l~s~~----------dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~--~I~iwd 442 (660)
+..+.+.|++++... ++.|.+||+.+++... + ..+..+.|+||| .|+.++.+ + .|++||
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 445555666665431 4679999999887543 3 457889999999 77776643 3 488889
Q ss_pred CCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEEcCCCeeeecee
Q 006126 443 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---------------------------AQLCVWDAVGWKKLCSKF 495 (660)
Q Consensus 443 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---------------------------g~i~vwd~~~~~~~~~~~ 495 (660)
+.+++....... .. +..+.|+|||+.|+.++.+ ..|++||+.+++.. ..
T Consensus 92 ~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~--~~ 167 (347)
T 2gop_A 92 LETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI--EE 167 (347)
T ss_dssp TTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE--EE
T ss_pred CCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE--ee
Confidence 988876554443 34 9999999999998887642 56999999886531 11
Q ss_pred eeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec------C---cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEE
Q 006126 496 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE------G---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 565 (660)
Q Consensus 496 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d------~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 565 (660)
+. .. .+..++|+||| +++++ .+ . .|+++| +++. ..+.. + ..+..+ +|||++|
T Consensus 168 l~---~~------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~--~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 168 FE---KP------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFE--K-VSFYAV--DSDGERI 229 (347)
T ss_dssp EE---EE------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEE--E-ESEEEE--EECSSCE
T ss_pred ec---CC------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEecc--C-cceeeE--CCCCCEE
Confidence 22 11 26688999999 66654 32 1 355555 4443 34432 2 344443 9999998
Q ss_pred EEEecC--------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE-EEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 566 YVSCKS--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV-IAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 566 ~sg~~d--------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~-v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+.++.+ ..|++|| +++...... ++ ... +.. +.|+ |+ ++++++.|+.++|| +.+++
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-------~~-~~~--~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILD-------EV-DRG--VGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEEESST-------TC-CSE--EEEEEEET--TE-EEEEEEETTEEEEE-EESSS
T ss_pred EEEEccccCCccccceEEEEC--CCceEeccc-------cC-Ccc--cCCccEEc--Cc-EEEEEecCCcEEEE-EcCCc
Confidence 887754 3688888 555433221 21 222 334 7887 56 89999999999999 87544
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.47 E-value=6.6e-12 Score=142.86 Aligned_cols=282 Identities=11% Similarity=0.040 Sum_probs=171.7
Q ss_pred ecCCCEEEEEECCCc---EEEEeccCC---ceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEE
Q 006126 320 SHSGDFLVALTQTAT---HKLWKWQSN---KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 391 (660)
Q Consensus 320 spdg~~l~s~s~dg~---i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s 391 (660)
+|+|++++....++. -.+|..... .. ....+.|++. +..+|...+..++|+ |++|+.
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~lld~~~-------l~~~~~~~~~~~~~SPDG~~la~ 179 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGT--------KGRVLLDPNT-------WAKDGATALDAWAASDDGRLLAY 179 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTC--------CCEEEECGGG-------CC----EEEEEEEECTTSSEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCC--------CCEEEECHHH-------hccCCCEEEEeEEECCCCCEEEE
Confidence 489999887776543 555654321 00 0012222211 111344467889999 888887
Q ss_pred Ee-C-C----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCC--------------eEEEEeCCCCce--e
Q 006126 392 AS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS--------------SILVHCPCTKKT--K 449 (660)
Q Consensus 392 ~~-d-g----~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~--------------~I~iwd~~~~~~--~ 449 (660)
+. + | .|++||+.+++.+.... +...+..++|+||..|+.++.++ .|++|++.++.. .
T Consensus 180 ~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 258 (741)
T 1yr2_A 180 SVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ 258 (741)
T ss_dssp EEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE
T ss_pred EEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE
Confidence 76 2 3 59999999998765321 11123478899997344444443 399999987752 2
Q ss_pred eEeec--cCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 450 AKLKG--HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 450 ~~~~~--~~~~v~~l~~sp~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
..+.. +...+..+.|+|||++|+..+.++ .|++||+.++.. .....+. .+. ..+... ++|+|..|
T Consensus 259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~-~~~---~~~~~~-~~~dg~~l 330 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALI-PDL---KAQWDF-VDGVGDQL 330 (741)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEE-CSS---SSCEEE-EEEETTEE
T ss_pred EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEec-CCC---CceEEE-EeccCCEE
Confidence 23332 334688999999999988877544 799999987521 1022122 222 233444 35889888
Q ss_pred EE-Ee----cCcEEEEeCCCC-ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECC-CCeeEEEeecccccC
Q 006126 523 LS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQ 595 (660)
Q Consensus 523 ~~-~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~~~~~ 595 (660)
+. +. ++.|.+||+.++ .....+... +...+..++|+ ++.++++...|+..+||.+. +++....+..+
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---- 404 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP---- 404 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS----
T ss_pred EEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC----
Confidence 87 43 345999999875 233444332 34556678887 66778888889887777554 35544444321
Q ss_pred CCCcCcccceEEEEEecCCCCEEE-EEe---CCCeEEEEeCCCCce
Q 006126 596 PGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 637 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~sp~d~~~l~-s~s---~Dg~v~iw~~~~~~~ 637 (660)
+ . ..+..++++| ++..++ +.+ ..++|++||+.+++.
T Consensus 405 -~--~--~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 405 -G--I--GSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -S--S--CEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -C--C--eEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 1 2 2344889999 666544 333 348999999988775
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=2.2e-11 Score=124.46 Aligned_cols=282 Identities=12% Similarity=0.006 Sum_probs=185.1
Q ss_pred EEEecCCCEEEEEEC-----CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 317 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 317 ~~~spdg~~l~s~s~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
....|+++.++.... ++.|.+.|..+.+ .+...-. +.. + . ++++ |+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~---------------------v~~~I~v-G~~-P-~-va~spDG~~l 92 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR---------------------VIGMIDG-GFL-P-N-PVVADDGSFI 92 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE---------------------EEEEEEE-CSS-C-E-EEECTTSSCE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCe---------------------EEEEEEC-CCC-C-c-EEECCCCCEE
Confidence 445789988887765 4567666655443 3322211 222 2 3 8888 7766
Q ss_pred EEEe-----------CCcEEEEECCCCeEEEEEcCCC-------CCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCce
Q 006126 390 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 448 (660)
Q Consensus 390 ~s~~-----------dg~I~iwd~~~~~~~~~~~~~~-------~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~ 448 (660)
++++ ++.|.+||..+++.+.++.... ..-..++++||| +++++.. ++.|.++|+.+++.
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 5553 4689999999999988875321 234578999999 7777653 68999999999999
Q ss_pred eeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCe-EEEEEe-cCCcEEEEE
Q 006126 449 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIV-NHIQFH-PDQIHLLSI 525 (660)
Q Consensus 449 ~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-p~~~~l~~~ 525 (660)
+.++.... . ...+....+.+++.+.||++.+.++.+ ++...... . ...... ..+ ....|. ++|++++++
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence 98885322 1 122333456777888899999999876 44321110 1 111100 122 224664 788877777
Q ss_pred ecCcEEEEeCCCCc--eeeeec--------CCCCCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCeeE
Q 006126 526 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR 585 (660)
Q Consensus 526 ~d~~i~iwd~~~~~--~~~~~~--------~~~~~~~v~~~~~s~dg~~l~sg~~----------dg~I~iwd~~~~~~~ 585 (660)
.+|.|++.|+.+.. .+..+. ..-.......++++++++.++.... .+.|.++|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 88999999997654 333332 0001122334777999998888653 257999999999999
Q ss_pred EEeecccccCCCCcCcccceEEEEEecCCCC-EEEEE-eCCCeEEEEeCCCCceeccCCC
Q 006126 586 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG-LTNGRVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 586 ~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~-s~Dg~v~iw~~~~~~~~w~~~~ 643 (660)
..+.. ....+ .++++| |++ +|.++ ..++.|.++|..+++..-....
T Consensus 325 ~~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 325 AKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 98875 23455 899999 775 66554 5589999999999987544433
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=5.2e-10 Score=111.74 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=183.6
Q ss_pred eeEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 267 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 267 ~~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.+.+.++|+..++...++.|.+||.. +.+..+.++. +...+.++++.++|...++...++.|..|+.. +..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 34778999988887788999999975 3344444433 45789999999999977766667888887765 322
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEE-EcCCCCCeEEEE
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI 422 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~ 422 (660)
..+. .. .....+.++++. +.++++.. ++.|..||.. ++.... +......+.+++
T Consensus 95 ----------~~~~----------~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 95 ----------TEYP----------LP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp ----------EEEE----------CS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred ----------EEec----------CC-CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 1111 10 133567888888 66666555 6899999987 655432 333456788999
Q ss_pred EcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 423 LLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 423 ~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
+.++| ..++...++.|..+|. +++.... ...+...+.++.++++|+..++....+.|.+||. ++.... .. .
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~ 225 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE---YD--I 225 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE--C
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE---EE--C
Confidence 99999 6666666789999998 5554432 2234457889999999987777667788999998 433211 11 1
Q ss_pred eccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
..+. ..+.+++++++|+..++. .++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+|.
T Consensus 226 ~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 226 PTPN---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp SSTT---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCC---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 1122 468899999999866665 5689999998 55443 332222345688999999998666655 4 7777775
Q ss_pred C
Q 006126 580 S 580 (660)
Q Consensus 580 ~ 580 (660)
+
T Consensus 299 ~ 299 (300)
T 2qc5_A 299 N 299 (300)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=3.7e-11 Score=125.09 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=183.9
Q ss_pred CCCCEEEEEeCC-----CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCcEE
Q 006126 272 PDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHK 336 (660)
Q Consensus 272 pdg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~dg~i~ 336 (660)
|+++.++.+... +.|.+.|..+ ......+... ..+ .++++|||++++.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 566766655543 6899999985 2333333321 233 899999999888776 355677
Q ss_pred EEeccCCceeeeeeccceeEEEecCCCCceeeecccC--C---CCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCe
Q 006126 337 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETFQ 406 (660)
Q Consensus 337 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~ 406 (660)
++|..+.+. +...... . .......+.++ |++++++. ++.|.+.|+.+++
T Consensus 153 viD~~t~~v---------------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 153 VFDPVTFLP---------------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp EECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEECCCCcE---------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 776655543 2211100 0 01234466788 78888876 3789999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE----eeccCCCe-EEEEEeCCCCEEEEEeCCCc
Q 006126 407 TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADAQ 479 (660)
Q Consensus 407 ~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~----~~~~~~~v-~~l~~sp~~~~l~s~s~dg~ 479 (660)
.+.++.... +....|++ .+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++..+..+.
T Consensus 212 vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~ 287 (426)
T 3c75_H 212 FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK 287 (426)
T ss_dssp EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE
T ss_pred EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc
Confidence 998887432 23445555 666677788888888766654422 21111221 23467999988888888999
Q ss_pred EEEEEcCCCeeeeceeeee-----eeeccCCCCCCeEEEEEecCCcEEEEE-e----------cCcEEEEeCCCCceeee
Q 006126 480 LCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 543 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~ 543 (660)
+.+.|+..........+.. +..+..+ .....++++|+++.+++. . ++.|.++|+.+.+.+.+
T Consensus 288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~ 365 (426)
T 3c75_H 288 IFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK 365 (426)
T ss_dssp EEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence 9999997643211111110 0000011 123347899999988774 2 35799999999999999
Q ss_pred ecCCCCCCCeEEEEEccCCC-EEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126 544 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 544 ~~~~~~~~~v~~~~~s~dg~-~l~sg~-~dg~I~iwd~~~~~~~~~~ 588 (660)
+.. ......++|+|||+ ++++.. .++.|.++|+.+++.+..+
T Consensus 366 I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 366 IEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 865 34588999999999 888887 4899999999999999887
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.4e-10 Score=117.00 Aligned_cols=244 Identities=11% Similarity=0.011 Sum_probs=163.4
Q ss_pred CCCeEEEEEecCCCEEEE-------EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEE
Q 006126 311 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 383 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s-------~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 383 (660)
-....+++|+++|..+++ ...++.|.+|+..+++.. .+... . ..++...+.+++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~~--~------~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICKP--E------VNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEECC--E------ETTEECCEEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEec--c------cCCCCCCCceEE
Confidence 446789999999987777 566788988886655431 11100 0 002445688899
Q ss_pred Ee-C-CEEEEEe-CCcEEEEECCCCeEEEE-EcC----CCCCeEEEEEcCCC-eEEEEeCC---------------CeEE
Q 006126 384 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FAN----PPPIATYFILLPQD-LFAFGFDD---------------SSIL 439 (660)
Q Consensus 384 ~s-~-~~l~s~~-dg~I~iwd~~~~~~~~~-~~~----~~~~v~~v~~sp~~-~l~s~~~d---------------~~I~ 439 (660)
++ . ..|..+. ++.|.+||.. ++.... ... ....+.+++++++| .+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 98 5 6766666 6689999998 765433 221 12347899999999 66655544 5788
Q ss_pred EEeCCCCceeeEeeccCCCeEEEEEe----CCCCEEEEE-eCCCcEEEEEcC-CCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 440 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 440 iwd~~~~~~~~~~~~~~~~v~~l~~s----p~~~~l~s~-s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
.||.. ++.... ..+......++|+ |+++.++.+ ..++.|.+||.. ++.......+. ...++.. ..+..+
T Consensus 157 ~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~--~~p~~i 231 (314)
T 1pjx_A 157 CFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHE--GGADGM 231 (314)
T ss_dssp EECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSS--CEEEEE
T ss_pred EECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCC--CCCCce
Confidence 88876 554333 2344557889999 999765554 567899999986 44322111222 1112110 246789
Q ss_pred EEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCC
Q 006126 514 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTST 581 (660)
Q Consensus 514 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~ 581 (660)
+++++|.++++. .++.|.+||..+++.+..+.. +...+.+++|+|+|+.|+.+ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888874 678999999987877666644 25779999999999965554 4568899999875
No 208
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=1.8e-10 Score=128.71 Aligned_cols=295 Identities=10% Similarity=0.026 Sum_probs=189.9
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 401 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd 401 (660)
+..++.++.++.+.-+|..+++. +|......................+++.+..++.++ |+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 44577777788888888888774 665443221100000000001123344577777777 99999999
Q ss_pred CCCCeEEEEEcCC-C----CCeEEEEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccCCC------------
Q 006126 402 LETFQTLATFANP-P----PIATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR------------ 458 (660)
Q Consensus 402 ~~~~~~~~~~~~~-~----~~v~~v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~------------ 458 (660)
..+|+.+..+... . ..+.+.-...++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9999999888754 2 1121111112444555443 789999999999988776532211
Q ss_pred --------------------eEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeeceeeeee
Q 006126 459 --------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF 499 (660)
Q Consensus 459 --------------------v~~l~~sp~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~~~ 499 (660)
...++++|++..++.++.++ .|..+|.++|+..-.....
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-- 302 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-- 302 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC--
Confidence 13578899988988887664 4999999998765433221
Q ss_pred eeccC----CCCCCeEEEEEecCC---cEEEE-EecCcEEEEeCCCCceeeeecCCCC---------CCCe---------
Q 006126 500 QTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---------DLPI--------- 553 (660)
Q Consensus 500 ~~~~~----~~~~~v~~~~~sp~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~v--------- 553 (660)
.|. .......-+....+| ..++. +.+|.++++|..+|+.+..+..... ..++
T Consensus 303 --~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 303 --PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp --TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred --CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 110 000122333444577 55666 5889999999999998866543210 0111
Q ss_pred ---------------EEEEEccCCCEEEEEecC-------------------------------------------CeEE
Q 006126 554 ---------------TYATYSCDGKCIYVSCKS-------------------------------------------GHVK 575 (660)
Q Consensus 554 ---------------~~~~~s~dg~~l~sg~~d-------------------------------------------g~I~ 575 (660)
..++|+|++.++++...+ |.|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 156889999988876542 7899
Q ss_pred EEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 576 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 576 iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
.||+.+++.+..+... .+.+ ...+.. ++..++.++.||.+++||..+++..|....+.
T Consensus 461 A~D~~tG~~~W~~~~~---------~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHV---------SPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEeCCCCcEEeecCCC---------CCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 9999999998887631 1222 334455 67788889999999999999999999876554
No 209
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.37 E-value=2.4e-10 Score=128.05 Aligned_cols=293 Identities=12% Similarity=0.043 Sum_probs=186.2
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CC-eEEEEEeCCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~v~~s~~~l~s~~-dg~I~i 399 (660)
+..++.++.++.+.-+|..+++. +|............ ... .. -..+.+.+..++.++ |+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence 55677777888899899888874 66543221110000 000 00 112334477788888 999999
Q ss_pred EECCCCeEEEEEcCC--CCCeEEEEEcC---CCeEEEEe------CCCeEEEEeCCCCceeeEeeccC------------
Q 006126 400 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------ 456 (660)
Q Consensus 400 wd~~~~~~~~~~~~~--~~~v~~v~~sp---~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~------------ 456 (660)
+|..+|+.+..+... ......+..+| ++.+++++ .++.|+.||..+|+.+-.+....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999998887642 11111111122 55444443 37899999999999887664210
Q ss_pred -------------------CCeEEEEEeCCCCEEEEEeCCCc-------------------EEEEEcCCCeeeeceeeee
Q 006126 457 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 457 -------------------~~v~~l~~sp~~~~l~s~s~dg~-------------------i~vwd~~~~~~~~~~~~~~ 498 (660)
.....++++|++..++.++.++. |..||.++|+..-.....
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~- 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT- 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence 01125788998889999888764 999999998765433221
Q ss_pred eeeccCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC----------------------
Q 006126 499 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------------- 548 (660)
Q Consensus 499 ~~~~~~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------------------- 548 (660)
.|.. ....+.......+|+ .++. ..+|.++++|.++|+.+.......
T Consensus 295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1110 001222223334665 5666 488999999999999874332210
Q ss_pred ----CC-----------CCeEEEEEccCCCEEEEEec-------------------------------------------
Q 006126 549 ----MD-----------LPITYATYSCDGKCIYVSCK------------------------------------------- 570 (660)
Q Consensus 549 ----~~-----------~~v~~~~~s~dg~~l~sg~~------------------------------------------- 570 (660)
.. ..-..++|+|+..+++++..
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 00 01113788999888887632
Q ss_pred --CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 571 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 571 --dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
+|.|+.||+.+|+.+..+... .+.. .-.+.. .+.++++++.||.|+.||..+|+..|....+.
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~---------~~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYV---------TIFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCC---------CCcc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 377999999999999887642 1122 224444 57899999999999999999999999765553
No 210
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.36 E-value=1.7e-09 Score=112.35 Aligned_cols=304 Identities=10% Similarity=-0.021 Sum_probs=186.0
Q ss_pred CCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC---C--CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 273 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 273 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~---h--~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
++..++.++.++.+..+|..++ ...-...+.... + ...+.+ ....++..++.++.++.+..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG---~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~-- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDG---KEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV-- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTC---CEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE--
T ss_pred ECCEEEEEcCCCeEEEEEccCC---ceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE--
Confidence 4677888888899999998742 222233332100 0 122322 2223456788888999999998887764
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCe-----EEE
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TYF 421 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v-----~~v 421 (660)
+|....+.. ........+..++.++ ++.|..+|..+|+.+..+....... ...
T Consensus 126 ----------~W~~~~~~~-----------~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~ 184 (376)
T 3q7m_A 126 ----------AWQTKVAGE-----------ALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP 184 (376)
T ss_dssp ----------EEEEECSSC-----------CCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC
T ss_pred ----------EEEEeCCCc-----------eEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc
Confidence 454321110 0111123366777777 8999999999999888776432211 111
Q ss_pred EEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCC-------eEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 422 ILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-------ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 422 ~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~-------v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
... ++.++.++.++.+..+|..+|+.+......... +..+.-.| .+..++.++.++.+..+|.++++...
T Consensus 185 ~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 185 TTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp EEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 222 347778888999999999999887666432100 00010111 24677788889999999999976543
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
.... .....+... +..+++ +.++.|..+|..+++.+....... ...+..... .+..|+.++.+
T Consensus 264 ~~~~-----------~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 264 KREL-----------GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp EECC-----------CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred eccC-----------CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence 2221 123344443 444554 678899999999999876654211 222222232 35788899999
Q ss_pred CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
|.|+++|..+|+.+...... ...+.. .... .+..|..++.||.|+.|+.
T Consensus 328 g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 99999999999988877642 111211 1111 2457888889999999873
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=2.1e-10 Score=117.79 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=128.5
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEECCCCe-----------EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeC
Q 006126 378 SISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 443 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~-----------~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~ 443 (660)
.++.++++ ..++++|+...+.+|++.+.. ..... .+.. |+.++| |+ .|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 58889999 778888885577779875433 11222 3455 999999 77 88888 8899999999
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
.+.........|...+.++.+.+.. +++++.||.|.+||+.++... .+. ..|++++|||+| ..+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EEE
T ss_pred hhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eEE
Confidence 8876666667788889888876643 888899999999999985432 111 479999999999 444
Q ss_pred EEecCcEEEEeCCCCce--eeeecC----C---CCCCCeEEEEEccCCCEEEE
Q 006126 524 SIHEGQIDVYEAPTLNH--TSQLVP----D---KMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 524 ~~~d~~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~dg~~l~s 567 (660)
...||.+++|+...+.. ..++.. . .|...|.+++|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 46999999999876664 455521 1 25788999999999999886
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=6.6e-10 Score=111.36 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=148.8
Q ss_pred CCCeEEEEEecCCCEEEE-EECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 311 GGRVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s-~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
..-..+..|+|++..|+. ...++.|..|+..++.. ..+ .....+.+++++ ++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~--------------~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRV--------------TMDAPVSSVALRQSGG 66 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEE--------------ECSSCEEEEEEBTTSS
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEE--------------eCCCceEEEEECCCCC
Confidence 345568899996655544 44578888887665432 111 134568899999 66
Q ss_pred EEEEEeCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCC-eEEEEeC-----------CCeEEEEeCCCCceeeE
Q 006126 388 HLFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAK 451 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~-~l~s~~~-----------d~~I~iwd~~~~~~~~~ 451 (660)
|+.+.++.|.+||..+++....... ....++.++++|+| ++++... .+.|+.++.. ++.. .
T Consensus 67 -l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~ 143 (297)
T 3g4e_A 67 -YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-K 143 (297)
T ss_dssp -EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-E
T ss_pred -EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-E
Confidence 5555677899999998876443322 12347889999999 4443322 2345555543 3333 2
Q ss_pred eeccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec
Q 006126 452 LKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 527 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d 527 (660)
+..+....+.++|+|+++.|+ +.+.++.|.+||+ .++.......+. ....+. ..+..++++++|++.++. .+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~-~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY-KLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE-ECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE-ECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 333445578999999998765 4555789999997 455432222222 111222 457889999999877775 56
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEec
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 570 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~ 570 (660)
+.|.+||..+++.+..+... ...+++++|+ |+++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 78999999889988888653 5679999998 89887776654
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.33 E-value=3e-10 Score=127.05 Aligned_cols=280 Identities=11% Similarity=0.067 Sum_probs=184.1
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCC-ceeeecccCCCCCCeE-EEEEeCCEEEEEe------
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------ 393 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~------ 393 (660)
++..++.++.|+.+..+|..+++. +|....+ ... ....+. .....+..++.++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKE------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYG 187 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCE------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccC
Confidence 456788888999999999988874 5654332 100 000111 1112255555544
Q ss_pred -CCcEEEEECCCCeEEEEEcCCCCC--------------------------------eEEEEEcCCC-eEEEEeCCC---
Q 006126 394 -GGKISIFSLETFQTLATFANPPPI--------------------------------ATYFILLPQD-LFAFGFDDS--- 436 (660)
Q Consensus 394 -dg~I~iwd~~~~~~~~~~~~~~~~--------------------------------v~~v~~sp~~-~l~s~~~d~--- 436 (660)
++.|..||..+|+.+..+...... ...++++|++ .++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW 267 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence 488999999999998887632211 1246788888 777777654
Q ss_pred ----------------eEEEEeCCCCceeeEeec--cC-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCC
Q 006126 437 ----------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGW 488 (660)
Q Consensus 437 ----------------~I~iwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~~---~~l~s~s~dg~i~vwd~~~~ 488 (660)
.|..+|..+|+.+..+.. |. .....+....+| ..++.++.+|.++++|.++|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998877654 21 112223334477 67889999999999999998
Q ss_pred eeeeceeeeeee-----e--------------ccC----CC---CCCeEEEEEecCCcEEEE-Eec--------------
Q 006126 489 KKLCSKFLHSFQ-----T--------------GLV----PE---TTIVNHIQFHPDQIHLLS-IHE-------------- 527 (660)
Q Consensus 489 ~~~~~~~~~~~~-----~--------------~~~----~~---~~~v~~~~~sp~~~~l~~-~~d-------------- 527 (660)
+.+....+.... . ++. +. ...-..++++|++..+++ ..+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 876443321000 0 000 00 000125789999888877 332
Q ss_pred -----------------------------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 528 -----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 528 -----------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
+.|..||+.+++.+-.+.. ..++....+..++..++.++.||.+++||
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 7799999999998877653 34455566777888999999999999999
Q ss_pred CCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE-EEEeC----------------CCeEEEEeCC
Q 006126 579 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLT----------------NGRVHVIEPL 633 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l-~s~s~----------------Dg~v~iw~~~ 633 (660)
..+|+.+..+... ..+...-+.|.+ +|+.+ ++.+. .+.+.+|.+.
T Consensus 505 ~~tG~~lw~~~~~---------~~~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 505 AATGEKLWEAPTG---------TGVVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCCceeeeeeCC---------CCcccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 9999999988752 112233567777 67644 44322 3678888876
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=2.2e-09 Score=107.47 Aligned_cols=221 Identities=12% Similarity=0.013 Sum_probs=145.3
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
-..+..|+ ++.|+... ++.|..||..+++.. .+. ....+.+++++++| ++++ . ++.|.+||..+++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 34567777 44444444 789999999887653 332 34678999999999 5444 3 568999999887654332
Q ss_pred ec----cCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCC
Q 006126 453 KG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 519 (660)
Q Consensus 453 ~~----~~~~v~~l~~sp~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 519 (660)
.. ....++.++++|+|+++++...+ ..-.+|.+...... .. ...+ . ...+.++|+|++
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--~~---~~~~-~---~~pngi~~spdg 160 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--KK---YFDQ-V---DISNGLDWSLDH 160 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--EE---EEEE-E---SBEEEEEECTTS
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE--EE---Eeec-c---ccccceEEcCCC
Confidence 21 12457899999999977654321 23445554432111 11 1111 1 356789999999
Q ss_pred cEEEEE--ecCcEEEEeC--CCCcee--eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 006126 520 IHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 592 (660)
Q Consensus 520 ~~l~~~--~d~~i~iwd~--~~~~~~--~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~ 592 (660)
+.++++ .++.|.+||+ .++... ..+. ...+......++++++|++.++...++.|.+||..+++.+..+..+
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p- 239 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP- 239 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-
Confidence 988764 5688999987 455432 1111 1112356788999999998888877889999999999988887642
Q ss_pred ccCCCCcCcccceEEEEEe-cCCCCEEEEEe
Q 006126 593 YAQPGTISLELYPLVIAAH-PLEPNRIALGL 622 (660)
Q Consensus 593 ~~~~gh~~~~v~~~~v~~s-p~d~~~l~s~s 622 (660)
. ..+++++|. | +++.|..++
T Consensus 240 -------~--~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 240 -------V--DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp -------S--SBEEEEEEESG-GGCEEEEEE
T ss_pred -------C--CCceEEEEeCC-CCCEEEEEc
Confidence 1 235599998 8 666554443
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=9.7e-10 Score=115.27 Aligned_cols=246 Identities=9% Similarity=-0.025 Sum_probs=160.1
Q ss_pred CCeEEEEEe-CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceee
Q 006126 377 DSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA 450 (660)
Q Consensus 377 ~~v~~v~~s-~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~ 450 (660)
.....++|+ ...|+.+. ++.|++||..++........... .. ++|+|++ .++++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 457889998 44444444 68999999998877665554332 33 8999999 888887766 89999987665444
Q ss_pred Ee----eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCe--EEEEEecCCcEEEE
Q 006126 451 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV--NHIQFHPDQIHLLS 524 (660)
Q Consensus 451 ~~----~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~ 524 (660)
.+ ......+.+++++|++..|+++..++.|+.||..++......... ..++. ..- ..++|+|++..|++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--~~g~~---~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--LSGSL---GTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--CCSCC---CCSSCCEEEEETTTTEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--ccCCC---CCCccccEEEeCCCCEEEE
Confidence 44 224466788999995555666777889999999875421100000 11111 112 38999996445544
Q ss_pred -E-ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEe
Q 006126 525 -I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 525 -~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~ 588 (660)
. .++.|+.||.. +. +..+.+.. .-.....++++|+|+++++-. .++.|+.|++.+++.....
T Consensus 284 ~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 284 SDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 3 67889999975 33 22332211 023478999999999777777 7899999998888754433
Q ss_pred eccccc--CCCC--cCcccceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 006126 589 NLTAYA--QPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 632 (660)
Q Consensus 589 ~~~~~~--~~gh--~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~ 632 (660)
...... ..|. ...--.+..++++| ++.++++-..++.|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 210000 0000 00012356899999 7888888888899988765
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=6.6e-10 Score=115.66 Aligned_cols=233 Identities=13% Similarity=-0.037 Sum_probs=155.4
Q ss_pred CCEEEEEe--C----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCce
Q 006126 386 GSHLFSAS--G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKT 448 (660)
Q Consensus 386 ~~~l~s~~--d----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~ 448 (660)
++.+++.. + +.|.++|..+++.+.++.....+ .++++||| .++++. .++.|.++|..+++.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 45555544 3 69999999999999998855555 79999999 666654 467899999999998
Q ss_pred eeEeecc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeee----eeccCCCCCCeEEEEE
Q 006126 449 KAKLKGH-------QNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSF----QTGLVPETTIVNHIQF 515 (660)
Q Consensus 449 ~~~~~~~-------~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~ 515 (660)
+..+.-. ......+.|+|||++++++.. ++.|.+.|+.+++......+... ..+ .-.-+.+
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g------~~~~v~~ 235 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPAS------PTVFYMN 235 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE------TTEEEEE
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCC------CcEEEEE
Confidence 8777521 133457889999999998874 57899999999776554433100 000 1112445
Q ss_pred ecCCcEEEEE--------------------------------------ecCcEEEEeCCCCcee--eeecCC--C-----
Q 006126 516 HPDQIHLLSI--------------------------------------HEGQIDVYEAPTLNHT--SQLVPD--K----- 548 (660)
Q Consensus 516 sp~~~~l~~~--------------------------------------~d~~i~iwd~~~~~~~--~~~~~~--~----- 548 (660)
+++|+.+++. ..+.|.+.|....... ..+... .
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 5555544432 2234445554322210 111000 0
Q ss_pred -CCCCeEEEEEccCCCEEEEEec----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-
Q 006126 549 -MDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN- 616 (660)
Q Consensus 549 -~~~~v~~~~~s~dg~~l~sg~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~- 616 (660)
.......++++|+++.+++... ++.|.++|+.+.+.+..+... .. ...++|+| |++
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---------~~--P~gia~sp-Dg~~ 383 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---------HE--IDSINVSQ-DAEP 383 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---------EE--ECEEEECC-SSSC
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---------CC--cCeEEEcc-CCCE
Confidence 0011122689999998777643 357999999999999988742 12 33899999 788
Q ss_pred EEEEEe-CCCeEEEEeCCCCcee
Q 006126 617 RIALGL-TNGRVHVIEPLESEVE 638 (660)
Q Consensus 617 ~l~s~s-~Dg~v~iw~~~~~~~~ 638 (660)
+++++. .++.|.|+|..+++..
T Consensus 384 ~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEcCCCCeEEEEECCCCCEE
Confidence 888877 5899999999998874
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=9e-10 Score=123.41 Aligned_cols=311 Identities=11% Similarity=0.055 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCC-----CC-CCe-EEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~-----h~-~~V-~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
+..+++++.++.|.-+|..++ ...-.+...... .. ..+ ..+++ ++..++.++.|+.+..+|..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~- 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDG---RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR- 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTC---CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-
T ss_pred CCEEEEEcCCCeEEEEECCCC---ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE-
Confidence 556666777778888887642 122222111100 00 001 11122 356788888999999999988875
Q ss_pred eeeeccceeEEEecCCCC-ceeeecccCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEECCCCeEEEEEcCCC--
Q 006126 347 LEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP-- 415 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-------dg~I~iwd~~~~~~~~~~~~~~-- 415 (660)
+|..... .. .....+. +..+.+..++.+. +|.|..||..+|+.+..+....
T Consensus 144 -----------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 205 (689)
T 1yiq_A 144 -----------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD 205 (689)
T ss_dssp -----------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred -----------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence 5654322 00 0000111 1112244555543 4789999999999988775210
Q ss_pred -C----------------------------CeEEEEEcCCC-eEEEEeCCC-------------------eEEEEeCCCC
Q 006126 416 -P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTK 446 (660)
Q Consensus 416 -~----------------------------~v~~v~~sp~~-~l~s~~~d~-------------------~I~iwd~~~~ 446 (660)
. ....++++|++ .++.++.++ .|..+|.++|
T Consensus 206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG 285 (689)
T 1yiq_A 206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG 285 (689)
T ss_dssp TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred cccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence 0 01257888887 888888776 3999999999
Q ss_pred ceeeEeec--cC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeeeceeeeee--ee-----------
Q 006126 447 KTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF--QT----------- 501 (660)
Q Consensus 447 ~~~~~~~~--~~-------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~----------- 501 (660)
+.+..+.. |. ..+.......+|+ .++.++.+|.++++|.++|+.+....+... ..
T Consensus 286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~ 365 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL 365 (689)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE
T ss_pred ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc
Confidence 99877764 21 1122222333565 788899999999999999987633221100 00
Q ss_pred ---------ccC-----C---CCCCeEEEEEecCCcEEEEE-e-------------------------------------
Q 006126 502 ---------GLV-----P---ETTIVNHIQFHPDQIHLLSI-H------------------------------------- 526 (660)
Q Consensus 502 ---------~~~-----~---~~~~v~~~~~sp~~~~l~~~-~------------------------------------- 526 (660)
... + ....-..++++|+...+++. .
T Consensus 366 ~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 445 (689)
T 1yiq_A 366 DEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEG 445 (689)
T ss_dssp CHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHH
T ss_pred chhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccccc
Confidence 000 0 00011237889988877763 2
Q ss_pred --------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCC
Q 006126 527 --------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 598 (660)
Q Consensus 527 --------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh 598 (660)
+|.|+.||+.+++.+-.+.. ..++....+...+..+++|+.||.|+.||.++|+.+..+...
T Consensus 446 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~------- 515 (689)
T 1yiq_A 446 LLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA------- 515 (689)
T ss_dssp HHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-------
T ss_pred CCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC-------
Confidence 37799999999998877654 233344466678889999999999999999999999988742
Q ss_pred cCcccceEEEEEecCCCCE-EEEE
Q 006126 599 ISLELYPLVIAAHPLEPNR-IALG 621 (660)
Q Consensus 599 ~~~~v~~~~v~~sp~d~~~-l~s~ 621 (660)
..+...-+.|.. +|+. +++.
T Consensus 516 --~~~~~~p~ty~~-~G~qyv~~~ 536 (689)
T 1yiq_A 516 --SGVMAAPVTYSV-DGEQYVTFM 536 (689)
T ss_dssp --SCCCSCCEEEEE-TTEEEEEEE
T ss_pred --CCcccCceEEEE-CCEEEEEEE
Confidence 112222467777 6764 4443
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=1.2e-10 Score=119.47 Aligned_cols=188 Identities=12% Similarity=-0.004 Sum_probs=135.4
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 391 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s 391 (660)
.++..+++++....+++|+.++. .+|+.+............ +. .... . .+.. |+.++|.+.+|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~-----~~---~~~~---~--~lp~-V~~l~fd~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTP-----LT---FKWE---K--EIPD-VIFVCFHGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCC-----CC---CSEE---E--ECTT-EEEEEEETTEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhcccccc-----cc---ceEE---e--eCCC-eeEEEECCCEEEE
Confidence 37899999999999999998854 459876443100000000 00 0011 1 2555 9999998888888
Q ss_pred EeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEE
Q 006126 392 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 471 (660)
Q Consensus 392 ~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 471 (660)
+.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| +
T Consensus 103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 88999999999887666666677777888777655 48889999999999999887653 45689999999999 6
Q ss_pred EEEeCCCcEEEEEcCCCeeeeceeee--eeee---ccCCCCCCeEEEEEecCCcEEEE
Q 006126 472 VSSGADAQLCVWDAVGWKKLCSKFLH--SFQT---GLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 472 ~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~---~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
+.|..||++++|+...++......+. .... +|. ..|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 78999999999998876531111111 0011 244 68999999999999987
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.1e-09 Score=114.76 Aligned_cols=235 Identities=10% Similarity=-0.023 Sum_probs=156.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
-...+.++|+|+|+.+++...++.|++|+..++.. ..... . ..... ++|+ ++.
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~--~-~~~~~-ia~~~~g~~ 184 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP--G-FKGGK-PAVTKDKQR 184 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE--T-CCBCB-CEECTTSSE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec--c-CCCCc-eeEecCCCc
Confidence 35789999999999777766678898888765543 11100 1 11222 7788 777
Q ss_pred EEEEe-CC--cEEEEECCCCeEEEEE----cCCCCCeEEEEEcCC-CeEEEEeCCCeEEEEeCCCCceeeE----eeccC
Q 006126 389 LFSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQ-DLFAFGFDDSSILVHCPCTKKTKAK----LKGHQ 456 (660)
Q Consensus 389 l~s~~-dg--~I~iwd~~~~~~~~~~----~~~~~~v~~v~~sp~-~~l~s~~~d~~I~iwd~~~~~~~~~----~~~~~ 456 (660)
|+++. ++ .|.+|+...+.....+ ......+.+++++|+ +.|+.+..++.|+.||..++..... ..++.
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 88777 44 7999998766544444 224456788999995 4555577788999999987753322 22222
Q ss_pred CCe--EEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccC------C------CCCCeEEEEEecCCcE
Q 006126 457 NRI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV------P------ETTIVNHIQFHPDQIH 521 (660)
Q Consensus 457 ~~v--~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~------~~~~v~~~~~sp~~~~ 521 (660)
..- ..++|+|+ +.++++-..++.|+.||..... . ...++. . .-.....++++|+|.+
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l 336 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------E-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF 336 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------E-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------E-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE
Confidence 222 38999995 5566666678899999987521 1 111110 0 0035788999999996
Q ss_pred EEE-E-ecCcEEEEeCCCCceeeeecCCC-------------CCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 522 LLS-I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 522 l~~-~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
+++ . .++.|+.||+.++.. .++.+.. .-.....++++++|.++++-..++.|+.+++
T Consensus 337 yvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 666 5 678999999877764 3332210 0245889999999888888888889988775
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=4.4e-10 Score=115.14 Aligned_cols=269 Identities=9% Similarity=-0.033 Sum_probs=171.4
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCE
Q 006126 312 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 388 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~ 388 (660)
..+..++++|+|+.+++... ++.++||.+..+.. .-|-.... ...+|-..+..++++ ...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----------~~~p~~~~------~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----------IPFPPQSG------NAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----------EESCCCCS------SCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----------ecCCCccc------CcccceeEeeEEEEcCCCc
Confidence 57899999999998888642 34366676653221 11110000 011466789999999 455
Q ss_pred EEEEe-------CCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCC--eEEEEe---CCCeEEEEeCCCCceee
Q 006126 389 LFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTKKTKA 450 (660)
Q Consensus 389 l~s~~-------dg~I~iwd~~~~~~~~~~~~~------~~~v~~v~~sp~~--~l~s~~---~d~~I~iwd~~~~~~~~ 450 (660)
|..+. ++.|.+||+.+++.++.+..+ ......+++++++ .+++.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 55544 368999999999987776532 2346789999865 455555 67899999999888777
Q ss_pred EeeccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec-
Q 006126 451 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 527 (660)
Q Consensus 451 ~~~~~~~~v~-~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d- 527 (660)
.+.+|..... ...+.++|..+.+.+.++.+..|. ..+..++|+|+|+.|+++ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 6655432111 134555777777677777765442 135679999999988884 33
Q ss_pred CcEEEEeCC---CCc-----eeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc
Q 006126 528 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 599 (660)
Q Consensus 528 ~~i~iwd~~---~~~-----~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~ 599 (660)
+.++.++.. .+. ....+....+......++++++|.++++...++.|.+||..+++.......
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--------- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--------- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence 356555532 111 000111001133456799999999999998899999999966764433321
Q ss_pred CcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 600 SLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 600 ~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
....++.+++|.| ++.++++.+..+.+-+|
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 1123456899999 78888887765555433
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=6.5e-09 Score=105.54 Aligned_cols=216 Identities=12% Similarity=0.051 Sum_probs=139.9
Q ss_pred eEEEEEe--CCEE-EEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEee
Q 006126 379 ISCFALR--GSHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 453 (660)
Q Consensus 379 v~~v~~s--~~~l-~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~ 453 (660)
..+..|+ ++.+ ++.. ++.|..||..+++... +. ....+.+++|+|+| ++++ +.+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 3466777 3444 4444 7899999998876532 32 34578999999999 5554 444 59999998887543222
Q ss_pred c----cCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 454 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 454 ~----~~~~v~~l~~sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
. ....++++.++|+|+++++... .+.|..+| +++.. . +..+ . .....++|+|+++.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~---~~~~-~---~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---K---LFAD-I---SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---E---EEEE-E---SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---E---eeCC-C---cccCCeEEcCCCCEEE
Confidence 1 1245889999999997765442 24555555 43321 1 1111 1 3567899999999877
Q ss_pred EE--ecCcEEEEeCC--CC-cee--eeec-CCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC
Q 006126 524 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 595 (660)
Q Consensus 524 ~~--~d~~i~iwd~~--~~-~~~--~~~~-~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~ 595 (660)
.+ .++.|.+||+. ++ ... ..+. ..........++++++|.+.++...++.|.+||. +++.+..+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence 64 46789999986 55 321 1111 1112355678999999998877767789999998 56666666532
Q ss_pred CCCcCcccceEEEEEe-cCCCCEEEEEe
Q 006126 596 PGTISLELYPLVIAAH-PLEPNRIALGL 622 (660)
Q Consensus 596 ~gh~~~~v~~~~v~~s-p~d~~~l~s~s 622 (660)
.. .+.+++|+ | ++..|..++
T Consensus 270 ----~~--~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 270 ----GK--QTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp ----CS--BEEEEEEEST-TSCEEEEEE
T ss_pred ----CC--CcEEEEEecC-CCCEEEEEe
Confidence 22 24589998 7 666654444
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=7e-09 Score=107.59 Aligned_cols=284 Identities=9% Similarity=0.009 Sum_probs=175.5
Q ss_pred CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 006126 322 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 322 dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-dg~I~i 399 (660)
++..+++++.++.+..+|.++++. +|....+...... ......+. .+...+..++.++ ++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGWF--SKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---CC--SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------------eeeecCccccccc--cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 356788888889999898877764 4543221100000 00022232 2333377777777 899999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-----EEEEEeCCCCEEEEE
Q 006126 400 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 474 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~l~s~ 474 (660)
+|..+|+.+................ ++.+++++.++.|..+|..+|+.+..+....... ...... +..++++
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g 194 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG 194 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence 9999999887776443222122222 3478888899999999999999887765432111 122222 4567778
Q ss_pred eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCC---e-EEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCC
Q 006126 475 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD 550 (660)
Q Consensus 475 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 550 (660)
+.++.+..+|..+++........ ...+... ... + ..... .++..++.+.++.+..+|.++++.+.....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---- 267 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKREL---- 267 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEECC----
T ss_pred cCCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeeccC----
Confidence 88999999999998765433322 0000000 000 1 01111 134444445789999999999998766532
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
.....+.. ++..++.++.++.|+.+|..+|+.+...... + ..... .... .+..|..++.+|.|.++
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEEE
Confidence 23444443 4678888889999999999999988776521 1 11111 1222 24578888899999999
Q ss_pred eCCCCceeccCCC
Q 006126 631 EPLESEVEWGKLP 643 (660)
Q Consensus 631 ~~~~~~~~w~~~~ 643 (660)
|..+++..|....
T Consensus 334 d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 334 NVEDGRFVAQQKV 346 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999886544
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=9.8e-09 Score=104.23 Aligned_cols=224 Identities=12% Similarity=-0.044 Sum_probs=144.2
Q ss_pred CeEEEEEecCCCEEE-EEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEE
Q 006126 313 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 390 (660)
Q Consensus 313 ~V~~~~~spdg~~l~-s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~ 390 (660)
-..+.+|+|++..++ +...++.|..|+..++.. ..|. ....+.+++++ +..++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~v~~i~~~~dg~l~ 104 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------------LPFMGSALAKISDSKQL 104 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------------CSSCEEEEEEEETTEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------------CCCcceEEEEeCCCeEE
Confidence 346788999865544 444577888777655432 1111 23468899998 44444
Q ss_pred EEeCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEEeC------CCeEEEEeCCCCceeeEeeccCCCe
Q 006126 391 SASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 391 s~~dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
.+.+..|.+||..+++........ ...+.+++++|+| .+++... .+.|..++ +++.. .+..+....
T Consensus 105 v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~ 181 (326)
T 2ghs_A 105 IASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIP 181 (326)
T ss_dssp EEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSE
T ss_pred EEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCccc
Confidence 455555999999888764433211 2357899999999 5444332 24666666 45433 333334467
Q ss_pred EEEEEeCCCCEEEEE-eCCCcEEEEEcC--CC-eeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEe
Q 006126 460 TCLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 534 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~-s~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd 534 (660)
..++|+|+++.++.+ +.++.|.+||+. ++ .......+. ...... ..+..++++++|.+.++. .++.|.+||
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 899999999877555 457899999986 54 321111111 111112 356789999999877775 568899999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 571 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~d 571 (660)
. +++.+..+... ...+++++|+ ++++.|++++..
T Consensus 258 ~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecC
Confidence 8 67777776542 4569999998 898877665543
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=9.4e-10 Score=123.95 Aligned_cols=240 Identities=12% Similarity=0.067 Sum_probs=153.5
Q ss_pred CCCCeEEEEEecCCCEEEEEEC-C----CcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE
Q 006126 310 FGGRVVRLIYSHSGDFLVALTQ-T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 384 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l~s~s~-d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 384 (660)
|...+..++|||||++||.+.. . ..|++||+.+++. +...+ +......++|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---------------------~~~~~---~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---------------------LETPL---KDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---------------------EEEEE---EEEESCCCEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---------------------Ccccc---CCceeccEEE
Confidence 5668899999999999886543 2 3566776665543 22111 0001234567
Q ss_pred e-CCEEEEEe-CC-------------cEEEEECCCCeE--EEEEc--C-CCCCeEEEEEcCCC-eE-EEEeC---CCeEE
Q 006126 385 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFA--N-PPPIATYFILLPQD-LF-AFGFD---DSSIL 439 (660)
Q Consensus 385 s-~~~l~s~~-dg-------------~I~iwd~~~~~~--~~~~~--~-~~~~v~~v~~sp~~-~l-~s~~~---d~~I~ 439 (660)
+ ++.|+.+. +. .|++|++.++.. ...+. . +...+..+.|+||| .| ++.+. ++.|+
T Consensus 183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 6 77777776 53 499999987642 23333 2 34557789999999 55 44332 25899
Q ss_pred EEeCCCCc-eeeEeeccCCCeEEEEEeCCCCEEEEEeC-C---CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126 440 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGA-D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514 (660)
Q Consensus 440 iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 514 (660)
++|+.++. ....+..+....... |+++|..|+..+. + +.|..+|+.++... ... ....|. ..+. .
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~~-~l~~~~---~~~~--~ 332 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HWR-DLIPER---QQVL--T 332 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCE-EEECCC---SSCE--E
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---ccE-EEecCC---CCEE--E
Confidence 99998764 455566666666555 6677766655543 3 57999999875421 112 122333 2343 8
Q ss_pred EecCCcEEEE-E-ecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC----CeEEEEECCCCeeE
Q 006126 515 FHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 585 (660)
Q Consensus 515 ~sp~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d----g~I~iwd~~~~~~~ 585 (660)
|+++++.|+. . .++ .|++||+. +.....+... ....+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 9999998887 4 443 69999986 4444555432 24567778888898877766555 89999999888644
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.22 E-value=3.3e-09 Score=106.68 Aligned_cols=229 Identities=8% Similarity=-0.013 Sum_probs=149.8
Q ss_pred CCCCeEEEEEecCCCEE-EEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--C
Q 006126 310 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 386 (660)
Q Consensus 310 h~~~V~~~~~spdg~~l-~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~ 386 (660)
........+|+|+|+.| ++...++.|..|+.. +.. ..+. .+...+..++++ |
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------------~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------------DATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------------ESCSCEEEEEECTTS
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------------CCCCccceeeECCCC
Confidence 34567889999999954 455557888888653 221 1111 244567889998 5
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCC-eEEE----EeC-------------CCeEEEEeC
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP 443 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~----~~~~v~~v~~sp~~-~l~s----~~~-------------d~~I~iwd~ 443 (660)
+++++.. ++.|.+|+.. ++....... ....+..+++.|+| ..++ |.. .+.|+.||.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 5444444 5789999986 554332211 12346689999999 6665 332 356888888
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 517 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 517 (660)
.+++..... .....+.++|+||++.|+.+... +.|.+||+..+.......+. .... +....+++++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~---~~~~---~~pdgi~~d~ 248 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA---SVPD---GLPDGFCVDR 248 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE---CCSS---SCCCSEEECT
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE---ECCC---CCCCeEEECC
Confidence 777654433 34567889999999988777665 78999998764411111111 1111 3456789999
Q ss_pred CCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 518 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 518 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
+|++.++. .+.|.+||. +++.+..+... ..+.+++|+++++.|+.++.++ ++.++
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99955544 445999998 67777777653 2588999999999888887754 44443
No 226
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.19 E-value=1.3e-09 Score=122.85 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=152.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCC--------
Q 006126 374 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-------- 436 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~--d----g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~-------- 436 (660)
+|...+..++|+ |++|+.+. . ..|++||+.+++.+.... +......++|+ || .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 455678889999 88887544 2 379999999998655311 11112467899 99 787777663
Q ss_pred -----eEEEEeCCCCce--eeEe--ec-cCCCeEEEEEeCCCCEEEEEeC----CCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 437 -----SILVHCPCTKKT--KAKL--KG-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 437 -----~I~iwd~~~~~~--~~~~--~~-~~~~v~~l~~sp~~~~l~s~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
.|++|++.++.. ...+ .. |...+..+.|+|||++|+.... +..|+++|+.++.. .+. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~-~l~~ 278 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLL-TVQG 278 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCE-EEEC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceE-EEeC
Confidence 499999987643 2223 33 4456788999999998865443 24899999987531 112 1122
Q ss_pred cCCCCCCeEEEEEecCCcEEEE-Ee----cCcEEEEeCCCCce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCC---
Q 006126 503 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--- 572 (660)
Q Consensus 503 ~~~~~~~v~~~~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg--- 572 (660)
+. ...... ++++|..|+. +. .+.|..+|+.++.. ...+..+ ...+. .|++++++|+....++
T Consensus 279 ~~---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 DL---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp SS---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEE
T ss_pred CC---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCee
Confidence 22 233344 6777777665 42 25799999987654 2344442 33343 8899999888766543
Q ss_pred eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCce
Q 006126 573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 637 (660)
Q Consensus 573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D----g~v~iw~~~~~~~ 637 (660)
.|++|++..+. ...+... + . .++..+.++| ++..++....+ ++|+.||+.+++.
T Consensus 351 ~l~~~d~~g~~-~~~l~~p-----~--~--~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALP-----G--L--GSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEECTTSCE-EEEECCS-----S--S--SEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEECCCCe-eEEeecC-----C--C--ceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 68999988554 3333321 1 1 1233677888 55554444333 8999999988764
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=1e-08 Score=103.06 Aligned_cols=225 Identities=12% Similarity=-0.014 Sum_probs=146.8
Q ss_pred CCCCeEEEEEe--CCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee
Q 006126 375 PKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 449 (660)
Q Consensus 375 h~~~v~~v~~s--~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~ 449 (660)
.........|+ ++. +++.. ++.|..|+. +++ ...+..+...+..++++++| ++++...++.|.+|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44556788888 664 45544 789999998 454 34555566778899999999 66665566899999986 5533
Q ss_pred eEee---c-cCCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCC
Q 006126 450 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 508 (660)
Q Consensus 450 ~~~~---~-~~~~v~~l~~sp~~~~l~s----~s~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 508 (660)
.... + ....++.++++|+|++.++ |.. .+.|..||..+++... +. + . .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~-~---~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-D-L---D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-E-E---S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-c-C---C
Confidence 2221 1 1234678999999998886 332 2467778876654221 11 1 1 3
Q ss_pred CeEEEEEecCCcEEEEE-ec------CcEEEEeCCCCcee--eeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEEC
Q 006126 509 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~-~d------~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~ 579 (660)
....++|+||++.|+++ .. +.|++||+..+... ..+... .......++++++|++.++. .+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CC-cEEEECC
Confidence 56789999999988774 33 68999998654311 112111 13445678999999955444 44 4999998
Q ss_pred CCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE
Q 006126 580 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 629 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i 629 (660)
.++.+..+... . . +.+++|+| +++.|..++.++..++
T Consensus 266 -~g~~~~~~~~~--------~-~--~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-T--ASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp -TSCEEEEEECS--------S-C--CCEEEECT-TSCEEEEEETTEEEEE
T ss_pred -CCCEEEEEECC--------C-c--eeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 46666666532 2 2 34899998 7888887777654443
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=1.9e-09 Score=109.35 Aligned_cols=293 Identities=11% Similarity=0.051 Sum_probs=182.6
Q ss_pred EEEEEeCCCcEEEEeccCcCCCccee-eeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccce
Q 006126 276 SAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 276 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
.+..++.++.+..|| .+ +... ...+ +...+.++...++|. +..++.+ +..+|. +++.
T Consensus 32 ~l~v~t~~~~l~~~d-~~----g~~~~~~~~----~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~--------- 89 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TD----GSVKWFFKS----GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE--------- 89 (330)
T ss_dssp CEECSSTTTTTEEEC-TT----SCEEESSCG----GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG---------
T ss_pred eEEEEcCCCEEEEEC-CC----CcEEEEEec----CCCcccceEEecCCc-EEEecCc--EEEECC-CCcE---------
Confidence 456677788888888 53 3322 2111 233456677767776 4444444 655553 2221
Q ss_pred eEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEe
Q 006126 355 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGF 433 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~ 433 (660)
+|.... .........+.+..+..++ ++.|..+|.. ++...........+.++...+++.+..++
T Consensus 90 ---~~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt 154 (330)
T 3hxj_A 90 ---KWRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS 154 (330)
T ss_dssp ---GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred ---EEEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc
Confidence 122111 1111122223366777777 8999999998 87777766555556677777777677788
Q ss_pred CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEE
Q 006126 434 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 513 (660)
Q Consensus 434 ~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 513 (660)
.++.|..+|.. ++....+......+.++...+++...+ ++ +.|..+| .+++..... . ... ..+.++
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~-----~-~~~---~~~~~~ 220 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF-----Y-AGY---WTVTRP 220 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE-----C-CSS---CCCSCC
T ss_pred CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE-----c-cCC---cceece
Confidence 88999999998 887777765566677777877887554 44 8899999 665432211 1 111 357788
Q ss_pred EEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccc
Q 006126 514 QFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 593 (660)
Q Consensus 514 ~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~ 593 (660)
...++|...+.+.++.|..+|. +++.+..+... ...+..+.+.+++ .|..++.+|.|+.+|. +++....+...
T Consensus 221 ~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-- 293 (330)
T 3hxj_A 221 AISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-- 293 (330)
T ss_dssp EECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS--
T ss_pred EECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC--
Confidence 8899887777777888999985 66666555432 3333445565555 5667778889999996 67776665431
Q ss_pred cCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 594 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 594 ~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
...+. ++...+ ++. |..++.+|.+++......+
T Consensus 294 ------~~~~~--~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 ------SWIIA--TPVIDE-NGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp ------SCCCS--CCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred ------Ccccc--ceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence 22233 555656 555 5567899999998776543
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.15 E-value=1.8e-12 Score=134.35 Aligned_cols=227 Identities=15% Similarity=0.042 Sum_probs=131.8
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCC-CeE-E
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 461 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~-~v~-~ 461 (660)
++.+++++ ||.|..||..+|+.+..+.. ..+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 67888888 89999999999999988876 445455556677 788888999999999999988766653321 110 0
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCce
Q 006126 462 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 540 (660)
Q Consensus 462 l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 540 (660)
..+. ++..+++++.|+.++.||.++|+........ . ...++|++..+++ +.++.|+.||.++|+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~----------~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA----------F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC----------C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 0111 3456778888999999999997654322111 1 2345567777777 5889999999999987
Q ss_pred eeeecCCCCCCCeEEEEEccCC---CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 541 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 541 ~~~~~~~~~~~~v~~~~~s~dg---~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
+..+.... ....+++++. ..+++++.||.|+.||..+|+.+..... ..++. ....+++ ++..
T Consensus 153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---------~~pv~-~~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---------ASPVV-AFYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---------SSCEE-EEEECTT-SSCE
T ss_pred EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---------CCceE-EEEEecC-CceE
Confidence 66653211 1222333332 5677888999999999999998887763 22222 1344455 5543
Q ss_pred EEE--EeCCCeEEEEeCCCCc----eeccCCC
Q 006126 618 IAL--GLTNGRVHVIEPLESE----VEWGKLP 643 (660)
Q Consensus 618 l~s--~s~Dg~v~iw~~~~~~----~~w~~~~ 643 (660)
.+. ...++.++.+|..+|+ .+|....
T Consensus 218 ~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 218 KVMHINVAVETLRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp EECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred eccceeecccceeeeehhcCCcccceeeeecc
Confidence 211 1125567888888888 7887654
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=3.1e-09 Score=108.83 Aligned_cols=275 Identities=10% Similarity=0.029 Sum_probs=165.9
Q ss_pred ceeeEecCCCCEEEEEe--CCCcEEEEeccCcCCCcceeeee---cCCCCCCCCeEEEEEecCCCEEEEEEC-----CCc
Q 006126 265 SRESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TAT 334 (660)
Q Consensus 265 ~~~~~~spdg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---l~~~~h~~~V~~~~~spdg~~l~s~s~-----dg~ 334 (660)
...+.++|+|+.+++.. .++.++||.+.+ +.+..+. ....+|...+..++++++|+.+++-.. ++.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~----g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQ----DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEET----TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECC----CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 33458999999988864 234466776652 3333210 011235678999999999986555433 467
Q ss_pred EEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEE-----eCCcEEEEECCCCeE
Q 006126 335 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-----SGGKISIFSLETFQT 407 (660)
Q Consensus 335 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~-----~dg~I~iwd~~~~~~ 407 (660)
|.+||..+++.. ..+...... ..+...+..++++ +..++.+ .++.|.+||+.+++.
T Consensus 95 i~~~d~~tg~~~----------~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 95 LVAWDTLNNQLS----------RVIYLPPPI-------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp EEEEETTTTEEE----------EEEECCTTT-------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred EEEEECCCCeEE----------EEEECChhh-------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 888887665431 122211000 0233456788888 4454443 246899999999988
Q ss_pred EEEEcCCCCCeE-EEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEE
Q 006126 408 LATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWD 484 (660)
Q Consensus 408 ~~~~~~~~~~v~-~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-~i~vwd 484 (660)
.+.+..|..... ...+.++| .+.+.+.++.++.|. ..+..++|+|+|+.|+++..++ .+..++
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 777755422110 13455577 677777777776553 2367899999999988887766 454444
Q ss_pred cC---CCeeeeceeeeee-eeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEc
Q 006126 485 AV---GWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 559 (660)
Q Consensus 485 ~~---~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 559 (660)
.. .+..........+ ..++. +....++++++|.++++. .++.|.+||..+++....... .+...+.+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~ 299 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFG 299 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEEC
T ss_pred HHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEEC
Confidence 32 1100000000000 11222 345679999999888874 778999999866654333322 124568899999
Q ss_pred cCCCEEEEEecCCeEEEEE
Q 006126 560 CDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 560 ~dg~~l~sg~~dg~I~iwd 578 (660)
++|.++++.+..+.+.+|.
T Consensus 300 ~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTSCEEEEECCGGGSGGGB
T ss_pred CCCcEEEEeCccccccccc
Confidence 9998888876555554443
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1.6e-09 Score=110.83 Aligned_cols=259 Identities=8% Similarity=-0.036 Sum_probs=162.3
Q ss_pred cEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE----------CCCcEEEEeccCCceeeeeeccce
Q 006126 285 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSNKQSLEEENVNM 354 (660)
Q Consensus 285 ~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s----------~dg~i~vw~~~~~~~~~~~~~~~~ 354 (660)
+|.+.|..+ ......+... ..+ .++|+|||++++.+. .++.|.+||..+.+.
T Consensus 47 ~vsvID~~t---~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--------- 108 (368)
T 1mda_H 47 ENWVSCAGC---GVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--------- 108 (368)
T ss_dssp EEEEEETTT---TEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------
T ss_pred eEEEEECCC---CeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------
Confidence 788999875 2333333221 234 799999999888886 256787777666654
Q ss_pred eEEEecCCCCceeeecccCCC-----CCCeEEEEEe--CCEEEEEe---CCcEEE--EECCCCeEEEEEcCCCCCeEEEE
Q 006126 355 ESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLATFANPPPIATYFI 422 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~h-----~~~v~~v~~s--~~~l~s~~---dg~I~i--wd~~~~~~~~~~~~~~~~v~~v~ 422 (660)
+......+. ......++++ |++++++. +..|.+ +|+.+ +..+..... +.
T Consensus 109 ------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~ 169 (368)
T 1mda_H 109 ------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FH 169 (368)
T ss_dssp ------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CC
T ss_pred ------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eE
Confidence 222110000 1234467888 77888776 256888 99877 444432111 22
Q ss_pred EcCCC--eEEEEeCCCeEEEEeCCC-----Cceee----EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee-
Q 006126 423 LLPQD--LFAFGFDDSSILVHCPCT-----KKTKA----KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK- 490 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~~I~iwd~~~-----~~~~~----~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~- 490 (660)
+.|++ .+++.+.|+.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|..+...
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~ 244 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT 244 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce
Confidence 34565 556667788888888876 44331 111122333 3 667777777777 9999999975321
Q ss_pred -eeceeeee---eeeccCCCCCCeEEEEEecCCcEEEEE-e-c--------CcEEEEeCCCCceeeeecCCCCCCCeEEE
Q 006126 491 -LCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYA 556 (660)
Q Consensus 491 -~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 556 (660)
.....+.. ...+..+ .....++++||++.++++ . . +.+.++|+.+++.+.++.. ......+
T Consensus 245 v~~~~~~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~gi 319 (368)
T 1mda_H 245 MKAAIDGNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDSDAI 319 (368)
T ss_dssp EECCCCSSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEECEE
T ss_pred EEEEEEecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCcceE
Confidence 11111100 0000000 122237899999988874 3 2 3677999999999988865 3368899
Q ss_pred EEccCCCE-EEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126 557 TYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 557 ~~s~dg~~-l~sg~-~dg~I~iwd~~~~~~~~~~~~ 590 (660)
+|+|||+. +++.. .++.|.++|+.+++.+..+..
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 99999984 55555 489999999999999988864
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.14 E-value=2.3e-09 Score=109.75 Aligned_cols=225 Identities=9% Similarity=-0.091 Sum_probs=145.1
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----------CCCeEEEEeCCCCceeeEeecc-------CC
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 457 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----------~d~~I~iwd~~~~~~~~~~~~~-------~~ 457 (660)
.|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999855555 79999999 776665 3679999999999999888643 12
Q ss_pred CeEEEEEeCCCCEEEEEeC--CCcEEE--EEcCCCeeeeceeee----eeeeccCC-----CCCCeEEEE----------
Q 006126 458 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLH----SFQTGLVP-----ETTIVNHIQ---------- 514 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~--dg~i~v--wd~~~~~~~~~~~~~----~~~~~~~~-----~~~~v~~~~---------- 514 (660)
....+.++|||++++++.. +..+.+ +|..+ .....+. ....+... ..+.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 4567899999999998875 457888 88866 1111110 00000000 000000010
Q ss_pred ----------------EecCCcEEEE-EecCcEEEEeCCCCc--eeeeecCCC-----C---CCCeEEEEEccCCCEEEE
Q 006126 515 ----------------FHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYV 567 (660)
Q Consensus 515 ----------------~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~-----~---~~~v~~~~~s~dg~~l~s 567 (660)
.++++..++. +. +.|.+.|+.+.. .+..+.... + ......++|+||++.++.
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 0333333333 44 677777875432 222221100 0 111112689999998887
Q ss_pred Eec-C--------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEEe-CCCeEEEEeCCCCc
Q 006126 568 SCK-S--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE 636 (660)
Q Consensus 568 g~~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~s-~Dg~v~iw~~~~~~ 636 (660)
+.. + +.+.++|+.+++.+..+... . ...+++|+| |++ .+++.. .+++|.++|+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------~--~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------H--DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------E--EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECC---------C--CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 643 2 35669999999998887642 1 234899999 776 567776 59999999999988
Q ss_pred ee
Q 006126 637 VE 638 (660)
Q Consensus 637 ~~ 638 (660)
..
T Consensus 349 vv 350 (368)
T 1mda_H 349 DQ 350 (368)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=125.53 Aligned_cols=186 Identities=15% Similarity=0.073 Sum_probs=107.3
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCC
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 507 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 507 (660)
.+++++.|+.|+.||..+|+.+..+.. +.+.+..+.+++..+++++.|+.|+.||..+|+........ .......
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~~-- 85 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQA-- 85 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHTT--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Ccccccc--
Confidence 889999999999999999999988875 45555556667878888889999999999887643222211 0000000
Q ss_pred CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126 508 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 586 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~ 586 (660)
.+ .+..+ ..+++ +.++.|+.||.++|+.+..+... . ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 86 sp----~~~~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 SP----CRSSD-GILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred Cc----eEecC-CEEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 11 11123 34555 68899999999999987776442 1 23456788999999999999999999999887
Q ss_pred EeecccccCCCCcCcccceEEEEEecCCC---CEEEEEeCCCeEEEEeCCCCceeccCC
Q 006126 587 QINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 587 ~~~~~~~~~~gh~~~~v~~~~v~~sp~d~---~~l~s~s~Dg~v~iw~~~~~~~~w~~~ 642 (660)
.+.... .. ..++.+ +. ..+++++.||.|+.||..+|+..|...
T Consensus 155 ~~~~~~----------~~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFD----------YA--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEE----------EC--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEeccc----------cc--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 765321 01 122222 21 456778899999999999999999754
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.12 E-value=4.6e-08 Score=100.54 Aligned_cols=228 Identities=16% Similarity=0.170 Sum_probs=145.1
Q ss_pred CCEEEEEe--CCcEEEEECCCC----eEEEEEc-------CCCCCeEEEEEcCCCeEEEEeCC------CeEEEEeCCCC
Q 006126 386 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQDLFAFGFDD------SSILVHCPCTK 446 (660)
Q Consensus 386 ~~~l~s~~--dg~I~iwd~~~~----~~~~~~~-------~~~~~v~~v~~sp~~~l~s~~~d------~~I~iwd~~~~ 446 (660)
+++|+..+ ++.|.++|+.+. +..+++. .....-..+...|+|.++++..+ +.|.++|..++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCC
Confidence 56777776 789999999765 6666663 11123356788899933344333 78999999999
Q ss_pred ceeeEeeccC---CCeEEEEEeCCCCEEEEEe-------------------CCCcEEEEEcCCCeeeeceeeeeeeeccC
Q 006126 447 KTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLV 504 (660)
Q Consensus 447 ~~~~~~~~~~---~~v~~l~~sp~~~~l~s~s-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 504 (660)
+.+.++.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.... +..+..
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-----I~vg~~ 249 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-----LTLGEE 249 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-----EESCTT
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-----EecCCC
Confidence 9999886322 2234578899999888874 368999999998644332 222211
Q ss_pred CCCCCeEEEEE--ecCCcEEEE-E------ecCcEEEEeCCCCce--eeee--cCC---C-----------CCCCeEEEE
Q 006126 505 PETTIVNHIQF--HPDQIHLLS-I------HEGQIDVYEAPTLNH--TSQL--VPD---K-----------MDLPITYAT 557 (660)
Q Consensus 505 ~~~~~v~~~~~--sp~~~~l~~-~------~d~~i~iwd~~~~~~--~~~~--~~~---~-----------~~~~v~~~~ 557 (660)
. .....+.| +|+++++++ + .+++|.+|....+.. .+.+ ... . .......+.
T Consensus 250 g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 250 N--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp E--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred C--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 0 23445656 999999887 3 346787766544321 1111 000 0 024567899
Q ss_pred EccCCCEEEEEec-CCeEEEEECCC---CeeEEEeeccccc-----CCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 558 YSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 558 ~s~dg~~l~sg~~-dg~I~iwd~~~---~~~~~~~~~~~~~-----~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
+|+||++|+++.. .+.|.+||+.. .+++..+...... +.|. ........+.++| ||++|.++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 9999999998877 58999999863 3555555432000 0000 0001234799999 899988887
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=1.1e-08 Score=108.75 Aligned_cols=239 Identities=10% Similarity=0.054 Sum_probs=161.5
Q ss_pred EEEEEe-----CCEEEEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEE-c-CCC-eEEEEe---------------
Q 006126 380 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF--------------- 433 (660)
Q Consensus 380 ~~v~~s-----~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~-s-p~~-~l~s~~--------------- 433 (660)
..+.+. |+++..+. ++.|.+.|+.+.++.+.+.-. ......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 455553 67777776 578999999999998866532 345778887 5 899 777774
Q ss_pred ---CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC--------------------------------
Q 006126 434 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 478 (660)
Q Consensus 434 ---~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg-------------------------------- 478 (660)
.++.+.+.|..+.+...++.--. ....++++|+|+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 34579999999988887776322 456778999999999888553
Q ss_pred ------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc-----------
Q 006126 479 ------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----------- 539 (660)
Q Consensus 479 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~----------- 539 (660)
.|.+.|.++.+. ...+..+..+ ....++.++|||++++++ .+++|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~~--~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp CSEEETTEEEEECSGGGC--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CeeEECcEEEEeCcccCC--ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 366666665110 0102223333 246689999999999985 67899999998653
Q ss_pred -eeeeecCCCCCCCeEEEEEccCCCEEE-EEecCCeEEEEECCC----------CeeEEEeecccccCCCCcCcccceEE
Q 006126 540 -HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 540 -~~~~~~~~~~~~~v~~~~~s~dg~~l~-sg~~dg~I~iwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
.+..... ......++|+|+| +++ +..-|+.|.+||+.+ .+.+..+..+- ..||... ..+
T Consensus 322 ~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y--qpGh~~~---~~g 392 (595)
T 1fwx_A 322 AVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--QPGHLKT---VMG 392 (595)
T ss_dssp GEEECCBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS--CEEEEEE---TTT
T ss_pred ceEEEcCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc--cccccee---ccc
Confidence 2333322 5668899999999 555 455689999999987 45566665421 1132111 113
Q ss_pred EEEecCCCCEEEEEeC---CCe----------EEEEeCCCCc
Q 006126 608 IAAHPLEPNRIALGLT---NGR----------VHVIEPLESE 636 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~---Dg~----------v~iw~~~~~~ 636 (660)
...+| ||++|+++.. |+. -.++|+..++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45678 8999988763 432 1788986555
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=9.5e-08 Score=106.63 Aligned_cols=291 Identities=12% Similarity=0.068 Sum_probs=181.3
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCC-CC-eEEEEEeCCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~v~~s~~~l~s~~-dg~I~i 399 (660)
+..++.++.++.+.-+|..+++. +|............ ... .. -..+++.+..++.++ |+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKAR--TSCCDAVNRGVALWGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEEBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCccccc--cccccCCccceEEECCEEEEEcCCCEEEE
Confidence 45577777788888888887774 66543322110000 000 00 112334466777777 999999
Q ss_pred EECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccC------------
Q 006126 400 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ------------ 456 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~------------ 456 (660)
+|..+|+.+..+.... ..+.+ ..+ .++.++++.. ++.|+.+|..+|+.+..+....
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 9999999988876421 11111 111 1444555443 5899999999999987764210
Q ss_pred -------------------CCeEEEEEeCCCCEEEEEeCCC-------------------cEEEEEcCCCeeeeceeeee
Q 006126 457 -------------------NRITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 498 (660)
Q Consensus 457 -------------------~~v~~l~~sp~~~~l~s~s~dg-------------------~i~vwd~~~~~~~~~~~~~~ 498 (660)
.....++++|++..++.++.++ .|..+|.++|+..-.....
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~- 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT- 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-
Confidence 0112467888888888888776 3999999998765433221
Q ss_pred eeeccCC----CCCCeEEEEEecCCc---EEEE-EecCcEEEEeCCCCceeeeecCCC----------CCCC--------
Q 006126 499 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------MDLP-------- 552 (660)
Q Consensus 499 ~~~~~~~----~~~~v~~~~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~-------- 552 (660)
.|.. .........+..+|+ .++. +.+|.++++|..+|+.+....... ...+
T Consensus 290 ---~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 290 ---PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred ---CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 1110 001222333344675 4555 588999999999999874432211 0000
Q ss_pred ----------------eEEEEEccCCCEEEEEe------------------------------------cCCeEEEEECC
Q 006126 553 ----------------ITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTS 580 (660)
Q Consensus 553 ----------------v~~~~~s~dg~~l~sg~------------------------------------~dg~I~iwd~~ 580 (660)
-..++++|+...++... .+|.|+.||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 01267888877766521 23789999999
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
+|+.+...... .... ...... .+.+++.++.||.|+.||..+++..|....+
T Consensus 447 tG~~~W~~~~~---------~~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 447 KQKAAWKVPYP---------THWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEccCC---------CCCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99998887642 1122 222333 5778888999999999999999999977655
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=4.1e-07 Score=101.51 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=158.9
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-------CC
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-------GG 395 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-------dg 395 (660)
+..++.++.|+.+..+|..+++. +|............ ....+ ...+..++.+. +|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~~~~--~~~~P----~v~~~~v~vg~~~~~~~~~g 178 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKA------------IWSQQTTDPAKPYS--ITGAP----RVVKGKVIIGNGGAEYGVRG 178 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCE------------EEEEECSCTTSSCB--CCSCC----EEETTEEEECCBCTTTCCBC
T ss_pred CCEEEEEcCCCEEEEEECCCCCE------------eeeeccCCCCCcce--ecCCC----EEECCEEEEeCCCCCcCCCC
Confidence 45688888899999999888875 56543221000000 01111 12345555553 37
Q ss_pred cEEEEECCCCeEEEEEcCC---CC----------------------------CeEEEEEcCCC-eEEEEeCCC-------
Q 006126 396 KISIFSLETFQTLATFANP---PP----------------------------IATYFILLPQD-LFAFGFDDS------- 436 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~---~~----------------------------~v~~v~~sp~~-~l~s~~~d~------- 436 (660)
.|..+|..+|+.+..+... .. ....+++.|++ .++.++.++
T Consensus 179 ~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~ 258 (668)
T 1kv9_A 179 FVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREV 258 (668)
T ss_dssp EEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred EEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCC
Confidence 8999999999999887521 10 01246788877 788877665
Q ss_pred ------------eEEEEeCCCCceeeEeec--cC-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCeeee
Q 006126 437 ------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 437 ------------~I~iwd~~~~~~~~~~~~--~~-------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
.|..+|..+|+.+-.+.. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+.
T Consensus 259 ~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 338 (668)
T 1kv9_A 259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS 338 (668)
T ss_dssp HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence 499999999999877764 22 2233333334665 68889999999999999988763
Q ss_pred ceeeee-----eeeccC-------------------CC---CCCeEEEEEecCCcEEEE-E-------------------
Q 006126 493 SKFLHS-----FQTGLV-------------------PE---TTIVNHIQFHPDQIHLLS-I------------------- 525 (660)
Q Consensus 493 ~~~~~~-----~~~~~~-------------------~~---~~~v~~~~~sp~~~~l~~-~------------------- 525 (660)
...... -..... +. ...-..++++|+...+++ .
T Consensus 339 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~ 418 (668)
T 1kv9_A 339 AEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKA 418 (668)
T ss_dssp EEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSS
T ss_pred cccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccc
Confidence 222110 000000 00 000113678887766654 1
Q ss_pred -----------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEe
Q 006126 526 -----------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 526 -----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~ 588 (660)
.++.|..||+.+++.+-.... ..+.....+...+.++++|+.||.|+.||..+|+.+..+
T Consensus 419 ~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 419 FNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 237799999999998766643 233334455567889999999999999999999999988
Q ss_pred ec
Q 006126 589 NL 590 (660)
Q Consensus 589 ~~ 590 (660)
..
T Consensus 496 ~~ 497 (668)
T 1kv9_A 496 EA 497 (668)
T ss_dssp EC
T ss_pred cC
Confidence 75
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.96 E-value=4.2e-07 Score=99.33 Aligned_cols=293 Identities=11% Similarity=0.049 Sum_probs=176.2
Q ss_pred CCEEEEEEC-CCcEEEEec-cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe-CCcEEE
Q 006126 323 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 399 (660)
Q Consensus 323 g~~l~s~s~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~-dg~I~i 399 (660)
+..++.++. ++.+.-+|. .+++. +|...............-......+++.+..++.++ |+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence 445666666 788888887 67764 565432211000000000000112334567777777 899999
Q ss_pred EECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEeC------CCeEEEEeCCCCceeeEeeccCCC----------
Q 006126 400 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR---------- 458 (660)
Q Consensus 400 wd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~~------d~~I~iwd~~~~~~~~~~~~~~~~---------- 458 (660)
+|..+|+.+....... ..+.+ ... .++.+++++. ++.|+.+|..+|+.+.++......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 9999999988765322 01211 111 1455555554 789999999999988766532110
Q ss_pred ---------------------------e-EEEEEeCCCCEEEEEeCC----------------CcEEEEEcCCCeeeece
Q 006126 459 ---------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 459 ---------------------------v-~~l~~sp~~~~l~s~s~d----------------g~i~vwd~~~~~~~~~~ 494 (660)
+ ..+++.++...++.++.+ +.|..+|.++|+..-..
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~ 288 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence 0 135677766677666532 25999999998765433
Q ss_pred eeeeeeeccCC----CCCCeEEEEEecCCc---EEEEE-ecCcEEEEeCCCCceeeeecCCCC-----------CCCe--
Q 006126 495 FLHSFQTGLVP----ETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI-- 553 (660)
Q Consensus 495 ~~~~~~~~~~~----~~~~v~~~~~sp~~~---~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~v-- 553 (660)
... .|.. ......-+...++|+ .++.+ .+|.++++|..+|+.+..+..... ..++
T Consensus 289 ~~~----~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~ 364 (571)
T 2ad6_A 289 QKT----PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRD 364 (571)
T ss_dssp ESS----TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEEC
T ss_pred cCC----CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecc
Confidence 221 1100 001111223335775 44444 788999999999998766543210 0111
Q ss_pred ------------------------EEEEEccCCCEEEEEec-------------------------------------CC
Q 006126 554 ------------------------TYATYSCDGKCIYVSCK-------------------------------------SG 572 (660)
Q Consensus 554 ------------------------~~~~~s~dg~~l~sg~~-------------------------------------dg 572 (660)
..++++|+...+++... +|
T Consensus 365 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g 444 (571)
T 2ad6_A 365 PEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMG 444 (571)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCE
T ss_pred cccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCC
Confidence 24678888888877643 47
Q ss_pred eEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCCC
Q 006126 573 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 644 (660)
Q Consensus 573 ~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~ 644 (660)
.|+.||+.+++.+..+... .... ...... .+..+..++.||.|+.||..+++..|....+
T Consensus 445 ~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 445 QIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 8999999999998887642 1111 111122 4567777899999999999999999976554
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=1.9e-06 Score=84.34 Aligned_cols=199 Identities=11% Similarity=-0.009 Sum_probs=129.7
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE
Q 006126 378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
.+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++++++ .+++....+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 36688888 56666666 6899999997665443343333567899999975 555555677999999874332222
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 526 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~ 526 (660)
..........++++|++..|..+.. .+.|..+++..... .. +..... .....++++|++..|+.+ .
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~---~~~~~~---~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RI---LAQDNL---GLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EE---EECTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EE---EEECCC---CCCcEEEEcCCCCEEEEEECC
Confidence 2222256789999997666655554 36888888765211 11 111111 357889999988777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeec
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.+.|.++|.........+.. ......++.. +..|+.+. .++.|.++|..+++.+..+..
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 67899999965443333322 3344567654 45555554 468999999999998888753
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.95 E-value=2.4e-07 Score=89.59 Aligned_cols=217 Identities=13% Similarity=-0.004 Sum_probs=142.7
Q ss_pred CeEEEEEcCCC-CCeEEEEEcCCC-eEEEEeC--CCeEEEEeCCCCceeeEeeccC-CCeEEEEEeCCCCEEEEE-eCCC
Q 006126 405 FQTLATFANPP-PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSS-GADA 478 (660)
Q Consensus 405 ~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~--d~~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~-s~dg 478 (660)
.+.+.++.... .....+.|++++ .+++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|..+ -.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 34555664322 235789999989 5555443 6799999999999988875322 222345554 4455544 4578
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeE
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 554 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~ 554 (660)
.+.++|..+.+.+.. +..+ .+ . ...+++||+.++++ .++.|.++|..+.+.+..+...... ..+.
T Consensus 87 ~v~viD~~t~~v~~~-----i~~g-~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKN-----FTHQ-MK---D--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEEETTTTEEEEE-----EECC-SS---S--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCCCcEEEE-----EECC-CC---C--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 999999999655433 2222 11 1 23366788877775 5689999999999988888754221 2467
Q ss_pred EEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccC----CCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEE
Q 006126 555 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 630 (660)
Q Consensus 555 ~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw 630 (660)
.+.|. +|...+....++.|.+.|..+++.+..+......+ .++ ........++|+|+...+++++...++|.+.
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 78887 77544444457899999999999999987531110 011 1112245999999433466777788999999
Q ss_pred eCCCCc
Q 006126 631 EPLESE 636 (660)
Q Consensus 631 ~~~~~~ 636 (660)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 987653
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.95 E-value=1.1e-05 Score=92.31 Aligned_cols=328 Identities=8% Similarity=-0.012 Sum_probs=199.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC----CCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~----~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
.++|. +..|+.++-+..||..+ ..+..+.... .-....|.++...++|... .|+.+ -+.+|+..+...
T Consensus 223 d~~g~-lwigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~- 294 (795)
T 4a2l_A 223 QSPTR-IWVATEGAGLFLINPKT----KEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSF- 294 (795)
T ss_dssp EETTE-EEEEEBSSCEEEEETTT----TEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEE-
T ss_pred cCCCC-EEEEECCCCeEEEeCCC----CeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeE-
Confidence 34454 44455554588888763 4454443210 1124679999999999854 45555 577777655433
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc------CCCCCe
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA------NPPPIA 418 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~------~~~~~v 418 (660)
..+........ .-....|.++... ...|..|+ ++-|..|+..++....... -....|
T Consensus 295 ----------~~~~~~~~~~~-----~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V 359 (795)
T 4a2l_A 295 ----------ASYSSNPVENG-----SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV 359 (795)
T ss_dssp ----------EEECCCTTSTT-----SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE
T ss_pred ----------EEEecCCCCCC-----CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCee
Confidence 11111100000 0134568999888 55566666 6889999876554322111 123568
Q ss_pred EEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec--------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCee
Q 006126 419 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 490 (660)
Q Consensus 419 ~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~--------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~ 490 (660)
.++...++|.|..|+.++-|..||..+++....... ....|.++...++|+.|..|+.++-|..||..+++.
T Consensus 360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 999988888677788888899999887654432211 235789999888888566788878899999988543
Q ss_pred eeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC----CCCCCCeEEEEEccCCCEEE
Q 006126 491 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIY 566 (660)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~ 566 (660)
....... ..... ..|.++...++|...+.+. +.+.+||..+++....... ......|.++..+++|.+.+
T Consensus 440 ~~~~~~~--~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 440 ENFNQRN--SQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp EEECTTT--SCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred EEeecCC--CCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 2111000 00111 4789999999888776655 6699999877654322211 11246789999999998776
Q ss_pred EEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 567 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
... +-|..||..+++. .+.... ...+-... .+.++...+ +|.+.++.. . .|..|+..+++-
T Consensus 514 gt~--~Gl~~~~~~~~~~--~~~~~~-~~~~l~~~--~i~~i~~d~-~g~lWigT~-~-Gl~~~d~~~~~~ 574 (795)
T 4a2l_A 514 GGE--EGLSVFKQEGLDI--QKASIL-PVSNVTKL--FTNCIYEAS-NGIIWVGTR-E-GFYCFNEKDKQI 574 (795)
T ss_dssp EES--SCEEEEEEETTEE--EECCCS-CSCGGGGS--CEEEEEECT-TSCEEEEES-S-CEEEEETTTTEE
T ss_pred EeC--CceEEEeCCCCeE--EEecCC-CCCCCCCC--eeEEEEECC-CCCEEEEeC-C-CceeECCCCCcE
Confidence 554 4588999887765 222100 00011122 244888878 677665543 3 588899876643
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=2.3e-05 Score=89.54 Aligned_cols=325 Identities=9% Similarity=0.003 Sum_probs=202.0
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecC----CCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCc
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 344 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~----~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~ 344 (660)
...++|. |..|+.+ -+.+||..+ ..+..+... ..-....|.++...++|. |..|+.++-+..|+.....
T Consensus 269 ~~d~~g~-lWigt~~-Gl~~~~~~~----~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 269 AMDSQNR-LWIGTFN-DLNIYHEGT----DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp EECTTSC-EEEEESS-CEEEEETTT----TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred EEcCCCC-EEEEeCC-hhheEcCCC----CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 3445555 4444455 588888763 445443211 011346799999999998 5667777778778765443
Q ss_pred eeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEcC--------C
Q 006126 345 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN--------P 414 (660)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~~--------~ 414 (660)
. ..+..... ... -....|.++... ...|..|+ ++-|..|+..+++....... .
T Consensus 342 ~-----------~~~~~~~~---~~~---l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 342 F-----------KNIRNIPY---KNS---LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp S-----------EEECCCTT---SSS---CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred c-----------eEEcCCCC---CCC---CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 2 11111110 000 134568898888 55566667 67899999887765443211 2
Q ss_pred CCCeEEEEEcCCCe-EEEEeCCCeEEEEeCCCCceeeEee----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCe
Q 006126 415 PPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 489 (660)
Q Consensus 415 ~~~v~~v~~sp~~~-l~s~~~d~~I~iwd~~~~~~~~~~~----~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~ 489 (660)
...|.++...++|. |..|+.++-|.+||..+++...... .....|.++...++|.+.+. +. +.+.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCe
Confidence 35688998888885 9999998889999998876443221 13467899998888876654 44 568899988754
Q ss_pred eeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecC-----CCCCCCeEEEEEccCCCE
Q 006126 490 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----DKMDLPITYATYSCDGKC 564 (660)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~dg~~ 564 (660)
........ ...+.. ...|.++...++|...+.+. +.+..||..+++. .+.. ......|.++..+++|.+
T Consensus 483 ~~~~~~~~-~~~~~~--~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 483 FTTIEKEK-DGTPVV--SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGII 556 (795)
T ss_dssp EEECCBCT-TCCBCC--CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred EEEccccc-cccccC--CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence 32111000 000101 14689999999998777665 6799999876654 2221 012457899999999986
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 565 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 565 l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
.++.. . -|..||..+++... +.... |-....++ ++...+ +|.+.+++ ++.|..|++.+++.
T Consensus 557 WigT~-~-Gl~~~d~~~~~~~~-~~~~~----gl~~~~i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 557 WVGTR-E-GFYCFNEKDKQIKR-YNTTN----GLPNNVVY--GILEDS-FGRLWLST--NRGISCFNPETEKF 617 (795)
T ss_dssp EEEES-S-CEEEEETTTTEEEE-ECGGG----TCSCSCEE--EEEECT-TSCEEEEE--TTEEEEEETTTTEE
T ss_pred EEEeC-C-CceeECCCCCcEEE-eCCCC----CCchhheE--EEEECC-CCCEEEEc--CCceEEEcCCCCcE
Confidence 66543 3 58889988775433 32211 21123344 788777 67776665 35578888877654
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=5.3e-07 Score=98.53 Aligned_cols=245 Identities=11% Similarity=0.067 Sum_probs=152.7
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEEEe-------C
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------G 394 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s~~-------d 394 (660)
+..++.++.|+.+..+|..+++. +|....+.... ++ .+. .....+..++.++ +
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-----~~--~~~~~P~v~~g~v~vg~~~~~~~~~ 175 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKV-----GS--TLTQAPFVAKDTVLMGCSGAELGVR 175 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-----TC--BCCSCCEEETTEEEEECBCGGGTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCc-----cc--eeccCCEEECCEEEEEecCCccCCC
Confidence 55678888899999999888874 56532221000 00 111 1112344555544 5
Q ss_pred CcEEEEECCCCeEEEEEcCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeCC
Q 006126 395 GKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD 435 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~sp~~-~l~s~~~d 435 (660)
+.|..+|..+|+.+..+...... + ..+++.++. .++.++.+
T Consensus 176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~ 255 (571)
T 2ad6_A 176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN 255 (571)
T ss_dssp CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence 79999999999998877532211 0 135666765 66555532
Q ss_pred ----------------CeEEEEeCCCCceeeEeecc--C--------CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcC
Q 006126 436 ----------------SSILVHCPCTKKTKAKLKGH--Q--------NRITCLAYSLSLN---VLVSSGADAQLCVWDAV 486 (660)
Q Consensus 436 ----------------~~I~iwd~~~~~~~~~~~~~--~--------~~v~~l~~sp~~~---~l~s~s~dg~i~vwd~~ 486 (660)
+.|..+|..+|+.+-.++.. . .++ -+...++|+ .++.++.+|.+.++|..
T Consensus 256 ~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 334 (571)
T 2ad6_A 256 PAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRE 334 (571)
T ss_dssp CSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETT
T ss_pred CccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECC
Confidence 36999999999988776532 1 111 122234674 57778899999999999
Q ss_pred CCeeeeceeeee-e--eec---cC---------------------CC---CCCeEEEEEecCCcEEEEE-e---------
Q 006126 487 GWKKLCSKFLHS-F--QTG---LV---------------------PE---TTIVNHIQFHPDQIHLLSI-H--------- 526 (660)
Q Consensus 487 ~~~~~~~~~~~~-~--~~~---~~---------------------~~---~~~v~~~~~sp~~~~l~~~-~--------- 526 (660)
+|+.+....+.. . ..+ .. +. ...-..++++|+...+++. .
T Consensus 335 tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 414 (571)
T 2ad6_A 335 NGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPF 414 (571)
T ss_dssp TCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEEC
T ss_pred CCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccc
Confidence 987654433220 0 000 00 00 0001346788887777662 2
Q ss_pred ----------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 527 ----------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 527 ----------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
++.|..||+.+++.+-++... ..+....+...+..++.++.||.|+.||
T Consensus 415 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 415 MLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 368999999999987776532 2233333344567888899999999999
Q ss_pred CCCCeeEEEeec
Q 006126 579 TSTLELRCQINL 590 (660)
Q Consensus 579 ~~~~~~~~~~~~ 590 (660)
..+|+.+..+..
T Consensus 492 ~~tG~~lw~~~~ 503 (571)
T 2ad6_A 492 NKDGKELWNFKM 503 (571)
T ss_dssp TTTCCEEEEEEC
T ss_pred CCCCCEEEEEeC
Confidence 999999998875
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.93 E-value=2e-08 Score=101.81 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=166.7
Q ss_pred EEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEeCC
Q 006126 317 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 395 (660)
Q Consensus 317 ~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg 395 (660)
..+..+|. +..++.++.+..|| .+++. +|.... +...+.++... +..+..++++
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~ 79 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK 79 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc
Confidence 34445665 56666778887787 55543 343221 11224455555 5666666655
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 475 (660)
|..+|. +++....+...........+. ++.+..++.++.|..+|.. ++.......+...+.++...+++. +..++
T Consensus 80 -l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 80 -VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp -EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred -EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence 888886 565544433222222233333 4477888889999999988 777766665555667777777776 55577
Q ss_pred CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEE
Q 006126 476 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 555 (660)
Q Consensus 476 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 555 (660)
.++.|..+|.. ++....... .. ..+.++...+++...+.+ +.|..+| .+++....+.. ....+.+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~------~~---~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~ 219 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKT------ND---AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYA--GYWTVTR 219 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEEC------SS---CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECC--SSCCCSC
T ss_pred CCCEEEEECCC-CCEeEEEec------CC---CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEcc--CCcceec
Confidence 88999999998 543322211 11 356677787888765555 8999999 67777666543 2456778
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+..+++|. |..++.++.|..+|. +++....+... ..... .+...+ ++ .|..++.+|.|..+|. ++
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~-~g-~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN-TD-TIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT-TS-CEEEECTTCEEEEECT-TS
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC-CC-eEEEecCCCCEEEECC-CC
Confidence 88888875 455667788888874 56656555421 11112 344444 44 5667778889999996 67
Q ss_pred ceeccCC
Q 006126 636 EVEWGKL 642 (660)
Q Consensus 636 ~~~w~~~ 642 (660)
+..|...
T Consensus 285 ~~~~~~~ 291 (330)
T 3hxj_A 285 TEKWNFE 291 (330)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7777644
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.93 E-value=1.1e-07 Score=90.84 Aligned_cols=201 Identities=12% Similarity=0.033 Sum_probs=130.1
Q ss_pred eEEEEEcCCCC-CeEEEEEcCCC-eEEEEeCCC--eEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEe-CCCcE
Q 006126 406 QTLATFANPPP-IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL 480 (660)
Q Consensus 406 ~~~~~~~~~~~-~v~~v~~sp~~-~l~s~~~d~--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~dg~i 480 (660)
+.++++..... ....+.|+ ++ ++.+.+.+| .|+++|+.+++.+..+.... ........+++..|.... .++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 34555632222 23678888 67 666777666 89999999999988876433 333333333455555554 58899
Q ss_pred EEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEE
Q 006126 481 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 556 (660)
Q Consensus 481 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~ 556 (660)
.+||..+.+.+...... .. ...+++|+..|+.+ .++.|.++|..+.+.+.++...... ..++.+
T Consensus 110 ~v~D~~t~~~~~ti~~~-----~e-------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYD-----GE-------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEETTTCCEEEEEECS-----SC-------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEECccCcEEEEEECC-----CC-------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 99999997655443332 11 13344677777775 4678999999999998887663222 334557
Q ss_pred EEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCC--CcCcccceEEEEEecCCCCEEEEEe
Q 006126 557 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 557 ~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~g--h~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.|. +|+..+..-.++.|.+.|..+|+.+..+......+.. .....-..+.++|+| +++.|...+
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTG 243 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTG 243 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEE
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEEC
Confidence 776 7765555546789999999999999999865332211 001111234999999 555555554
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.89 E-value=2.6e-07 Score=95.00 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=131.6
Q ss_pred CCC--eEEEEeCCCeEEEEeCCCC----ceeeEee------c-cCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEc
Q 006126 425 PQD--LFAFGFDDSSILVHCPCTK----KTKAKLK------G-HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDA 485 (660)
Q Consensus 425 p~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~------~-~~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~ 485 (660)
+++ .++.|..++.|+++|+.+. +..++++ . .......+...|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 677 5666778889999998755 5555553 1 11245667889999 77766555 78999999
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe--------------------cCcEEEEeCCCCceeeeec
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------------------EGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~ 545 (660)
.+++.+...... .+.. ..-..+.|+|+++.++++. +.+|.+||+.+++.+.++.
T Consensus 172 ~T~~v~~~~~~~---~~~~---~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGKWEID---RGDQ---YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp TTCCEEEECCSB---CTTC---CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEEccC---CCCc---cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 997654433221 1111 2344688999999988874 6899999999998888886
Q ss_pred CCCCCCCeEEEEE--ccCCCEEEEEec------CCeEEEEECCCCeeE--EEeecccccCCC--------CcCcccceEE
Q 006126 546 PDKMDLPITYATY--SCDGKCIYVSCK------SGHVKVFDTSTLELR--CQINLTAYAQPG--------TISLELYPLV 607 (660)
Q Consensus 546 ~~~~~~~v~~~~~--s~dg~~l~sg~~------dg~I~iwd~~~~~~~--~~~~~~~~~~~g--------h~~~~v~~~~ 607 (660)
..........+.| +|+|++++++++ ++.|.+|..+.++.. ..+........+ .....-....
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 6322234455656 999999998885 468888776655422 222111100000 0000012448
Q ss_pred EEEecCCCCEEEEEe-CCCeEEEEeCCC
Q 006126 608 IAAHPLEPNRIALGL-TNGRVHVIEPLE 634 (660)
Q Consensus 608 v~~sp~d~~~l~s~s-~Dg~v~iw~~~~ 634 (660)
+.+|| |+++|.++. ..+.|.+||+..
T Consensus 326 I~lS~-DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISL-DDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECT-TSCEEEEEETTTTEEEEEECSS
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEEecC
Confidence 99999 788877666 468999999863
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=7.5e-07 Score=97.26 Aligned_cols=252 Identities=13% Similarity=0.161 Sum_probs=154.0
Q ss_pred EEEecCCCE----EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeE-EEEEeCCEEEE
Q 006126 317 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS 391 (660)
Q Consensus 317 ~~~spdg~~----l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~l~s 391 (660)
++++|.+.. ++.++.|+.+.-+|..+++. +|....+.... + ..+. .....+..++.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~~-----~--~~~~ssP~v~~g~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIKV-----G--STLTIAPYVVKDKVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-----T--CBCCSCCEEETTEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCCc-----c--ceeecCCEEECCEEEE
Confidence 456554444 78888899999888888874 56533221000 0 0111 11123445554
Q ss_pred Ee-------CCcEEEEECCCCeEEEEEcCCCCC-------------------------------------e-EEEEEcCC
Q 006126 392 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ 426 (660)
Q Consensus 392 ~~-------dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~sp~ 426 (660)
++ +|.|+.+|..+|+.+..+...... + ..+++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 43 589999999999998877632211 0 13456666
Q ss_pred C-eEEEEeCC----------------CeEEEEeCCCCceeeEeeccCCC---------eEEEEEe-CCC---CEEEEEeC
Q 006126 427 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQNR---------ITCLAYS-LSL---NVLVSSGA 476 (660)
Q Consensus 427 ~-~l~s~~~d----------------~~I~iwd~~~~~~~~~~~~~~~~---------v~~l~~s-p~~---~~l~s~s~ 476 (660)
. .++.++.+ +.|..+|.++|+.+-.++..... ..-+... .+| ..++.++.
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~ 331 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR 331 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC
Confidence 6 77777655 38999999999998777542211 1112222 567 46777899
Q ss_pred CCcEEEEEcCCCeeeeceeeee-------e--eec-------------cC-----C---CCCCeEEEEEecCCcEEEEE-
Q 006126 477 DAQLCVWDAVGWKKLCSKFLHS-------F--QTG-------------LV-----P---ETTIVNHIQFHPDQIHLLSI- 525 (660)
Q Consensus 477 dg~i~vwd~~~~~~~~~~~~~~-------~--~~~-------------~~-----~---~~~~v~~~~~sp~~~~l~~~- 525 (660)
+|.+.++|.++|+.+....+.. + ..+ +. | ....-..++++|+...+++.
T Consensus 332 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 332 NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEec
Confidence 9999999999988765433210 0 000 00 0 00001246677766655441
Q ss_pred ---------------------------------------ecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEE
Q 006126 526 ---------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 566 (660)
Q Consensus 526 ---------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 566 (660)
..+.|.-||+.+++.+-.... ..+...-.+...+..++
T Consensus 412 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf 488 (599)
T 1w6s_A 412 NHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVF 488 (599)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEE
T ss_pred cccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEE
Confidence 236788899999988766542 12222222334677888
Q ss_pred EEecCCeEEEEECCCCeeEEEeec
Q 006126 567 VSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 567 sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
.++.||.|+.||.++|+.+..+..
T Consensus 489 ~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 489 YGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCeEEEEECCCCCEEEEeeC
Confidence 899999999999999999998864
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.87 E-value=2.8e-07 Score=87.92 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=129.0
Q ss_pred eEEEEEcCCC-CCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEE--EEEeCCCCEEEEEeCCCcEE
Q 006126 406 QTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC--LAYSLSLNVLVSSGADAQLC 481 (660)
Q Consensus 406 ~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~--l~~sp~~~~l~s~s~dg~i~ 481 (660)
+.++++.... .....+.|+ ++ ++.+.+.+|.|+++|+.+++.+..+ - ...... +++.. ++..+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 3445553222 234678887 35 7778888899999999999988877 2 233333 44432 23444445688999
Q ss_pred EEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEEEE
Q 006126 482 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYAT 557 (660)
Q Consensus 482 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~ 557 (660)
+||..+.+.+...... ..- ..+++|++.|+.+ .++.|+++|..+.+.+.++....+. ..++.+.
T Consensus 120 V~D~~Tl~~~~ti~~~----------~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS----------GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEEEECS----------SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEEEeCC----------Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 9999997665443332 111 2233667888776 5789999999999998887664322 2456677
Q ss_pred EccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC----CC-cCcccceEEEEEecCCCCEEEEE
Q 006126 558 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GT-ISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 558 ~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~----gh-~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
|. +|+..+....++.|.+.|..+++.+..+......+. .+ .... .+.++|+|....+++||
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v--lNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV--LNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC--EEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc--eEEEEEcCCCCEEEEeC
Confidence 76 776554444578999999999999999986532110 11 1122 34999999555566665
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=4e-06 Score=82.00 Aligned_cols=228 Identities=12% Similarity=0.028 Sum_probs=140.9
Q ss_pred CEEEEEeCCcEEEEECCCCeEE-----EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe
Q 006126 387 SHLFSASGGKISIFSLETFQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 459 (660)
Q Consensus 387 ~~l~s~~dg~I~iwd~~~~~~~-----~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v 459 (660)
.+|+.+..+.|+.+++...... ..+.........++|++++ .+++...++.|..+++..+.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4555666567888888754321 1122222346789999976 55555567899999987655433333333578
Q ss_pred EEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e--cCcEEEEe
Q 006126 460 TCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE 534 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~--d~~i~iwd 534 (660)
..++++|++..++.+ ...+.|.++++..... .. +..... .....++++|++..|+.+ . .+.|..++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~---~~~~~~---~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RV---LFDTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE---EECSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EE---EEECCC---CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 899999976555544 4567899999875221 11 111111 357899999976665553 2 46888888
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecC
Q 006126 535 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 613 (660)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~ 613 (660)
+. +.....+... .......+++++++..|+.+.. .+.|.++|.........+.. + .. ...++..
T Consensus 153 ~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~~---P~gi~~d-- 217 (267)
T 1npe_A 153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--QY---PFAVTSY-- 217 (267)
T ss_dssp TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--CS---EEEEEEE--
T ss_pred cC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--CC---ceEEEEe--
Confidence 74 4433333221 2456789999998877766554 58999999986544333321 1 11 2245542
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcee
Q 006126 614 EPNRIALGLTNGRVHVIEPLESEVE 638 (660)
Q Consensus 614 d~~~l~s~s~Dg~v~iw~~~~~~~~ 638 (660)
++..+++....+.|.+++..+++..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3445555556689999999988753
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=1.3e-06 Score=95.50 Aligned_cols=293 Identities=12% Similarity=0.048 Sum_probs=173.1
Q ss_pred CCEEEEEEC-CCcEEEEec-cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE--eCCE----EEEEe-
Q 006126 323 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSH----LFSAS- 393 (660)
Q Consensus 323 g~~l~s~s~-dg~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--s~~~----l~s~~- 393 (660)
+..++.++. ++.+.-+|. .+++. +|....+.................+++ .+.. ++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 445666666 788888888 67764 565433221100000000000112344 4333 66777
Q ss_pred CCcEEEEECCCCeEEEEEcCCC----CCeEE-EEEcCCCeEEEEe------CCCeEEEEeCCCCceeeEeeccCCC----
Q 006126 394 GGKISIFSLETFQTLATFANPP----PIATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR---- 458 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~~----~~v~~-v~~sp~~~l~s~~------~d~~I~iwd~~~~~~~~~~~~~~~~---- 458 (660)
|+.+..+|..+|+.+....... ..+.+ ..+ .++.+++++ .++.|+.+|.++|+.+-.+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 9999999999999988765322 01211 111 145555554 3899999999999988766532110
Q ss_pred ---------------------------------e-EEEEEeCCCCEEEEEeCCC----------------cEEEEEcCCC
Q 006126 459 ---------------------------------I-TCLAYSLSLNVLVSSGADA----------------QLCVWDAVGW 488 (660)
Q Consensus 459 ---------------------------------v-~~l~~sp~~~~l~s~s~dg----------------~i~vwd~~~~ 488 (660)
+ ..+++.++...++.++.++ .|..+|.++|
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 1345677777888777653 7999999998
Q ss_pred eeeeceeeeeeeeccCC----CCCCeEEEEEe-cCC---cEEEE-EecCcEEEEeCCCCceeeeecCCC-----------
Q 006126 489 KKLCSKFLHSFQTGLVP----ETTIVNHIQFH-PDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------- 548 (660)
Q Consensus 489 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~s-p~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------- 548 (660)
+..-..... .|.. ......-+... .+| ..++. +.+|.++++|.++|+.+.......
T Consensus 289 ~~~W~~q~~----~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 364 (599)
T 1w6s_A 289 EAKFGYQKT----PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK 364 (599)
T ss_dssp CEEEEEESS----TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred ceeeEeecC----CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccC
Confidence 765332221 1110 00011112222 567 44554 488999999999999876554211
Q ss_pred CCCCe--------------------------EEEEEccCCCEEEEEe---------------------------------
Q 006126 549 MDLPI--------------------------TYATYSCDGKCIYVSC--------------------------------- 569 (660)
Q Consensus 549 ~~~~v--------------------------~~~~~s~dg~~l~sg~--------------------------------- 569 (660)
...++ ..++++|+..++++..
T Consensus 365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~ 444 (599)
T 1w6s_A 365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG 444 (599)
T ss_dssp TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence 01111 2457777777665532
Q ss_pred ------cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceeccCCC
Q 006126 570 ------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 570 ------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~ 643 (660)
.+|.|.-||+.+++.+...... .+.+...++ . .+..+..++.||.++.||..+|+..|....
T Consensus 445 ~~~~~~~~G~l~A~D~~tG~~~W~~~~~---------~~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 445 DRQNYEGLGQIKAYNAITGDYKWEKMER---------FAVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp BTTTTBCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcccCCCcCeEEEEECCCCCEEeEecCC---------CCccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 3478999999999988877531 111100121 1 466777899999999999999999997654
Q ss_pred C
Q 006126 644 F 644 (660)
Q Consensus 644 ~ 644 (660)
+
T Consensus 513 ~ 513 (599)
T 1w6s_A 513 P 513 (599)
T ss_dssp S
T ss_pred C
Confidence 4
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.81 E-value=5.7e-06 Score=90.40 Aligned_cols=268 Identities=11% Similarity=0.046 Sum_probs=158.1
Q ss_pred CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeC----C-EEEEEe----
Q 006126 323 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS---- 393 (660)
Q Consensus 323 g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~----~-~l~s~~---- 393 (660)
+..++.++.|+.+.-+|..+++. +|........... .....++. ..+ + .+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~~--~~~~sP~v---~~~~~~G~~~v~vg~~~~e 179 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAGY--TMTGAPTI---VKDGKTGKVLLIHGSSGDE 179 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGTC--BCCSCCEE---EECTTTCCEEEEECCBCGG
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcCc--ccccCCEE---eCCCcCCcEEEEEeccccc
Confidence 45678888899999898888875 5553221100000 00111111 112 1 555543
Q ss_pred ---CCcEEEEECCCCeEEEEEcCCCCCe-----------------------------------------EEEEEcCCC-e
Q 006126 394 ---GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD-L 428 (660)
Q Consensus 394 ---dg~I~iwd~~~~~~~~~~~~~~~~v-----------------------------------------~~v~~sp~~-~ 428 (660)
++.|..+|..+|+.+.........+ ..+++.|+. .
T Consensus 180 ~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~ 259 (582)
T 1flg_A 180 FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT 259 (582)
T ss_dssp GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE
T ss_pred cCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCE
Confidence 5789999999999887654321000 134566766 6
Q ss_pred EEEEeC--------------------C----CeEEEEeCCCCceeeEeec--cC--------CCeEEEEEe-CCCC---E
Q 006126 429 FAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN---V 470 (660)
Q Consensus 429 l~s~~~--------------------d----~~I~iwd~~~~~~~~~~~~--~~--------~~v~~l~~s-p~~~---~ 470 (660)
++.+.. | +.|..+|..+|+.+-.++. |. .++. +... .+|+ .
T Consensus 260 vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~ 338 (582)
T 1flg_A 260 IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKA 338 (582)
T ss_dssp EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence 665552 2 5899999999999877753 21 1111 1222 4674 6
Q ss_pred EEEEeCCCcEEEEEcCCCeeeeceeeee-e--eec-------------cCC--------CC------------CCeEEEE
Q 006126 471 LVSSGADAQLCVWDAVGWKKLCSKFLHS-F--QTG-------------LVP--------ET------------TIVNHIQ 514 (660)
Q Consensus 471 l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~--~~~-------------~~~--------~~------------~~v~~~~ 514 (660)
++.++.+|.++++|.++|+.+....+.. . ..+ ..+ .. ..-..++
T Consensus 339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a 418 (582)
T 1flg_A 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA 418 (582)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence 8889999999999999988764433220 0 000 000 00 0011456
Q ss_pred EecCCcEEEE-Ee---------------------------------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEcc
Q 006126 515 FHPDQIHLLS-IH---------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 560 (660)
Q Consensus 515 ~sp~~~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 560 (660)
++|+...+++ .. ++.|.-||+.+++.+-+.... .++..-....
T Consensus 419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~t 495 (582)
T 1flg_A 419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLAT 495 (582)
T ss_dssp ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEE
T ss_pred ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEe
Confidence 6776555544 21 477999999999987665432 2222222233
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC-EEEEE
Q 006126 561 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG 621 (660)
Q Consensus 561 dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~-~l~s~ 621 (660)
.+..++.|+.||.++.||.++|+.+..+... ..+...-+.|.. +|+ ++++.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~---------~g~~a~P~~y~~-~G~qYv~~~ 547 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---------SGIVSPPITWEQ-DGEQYLGVT 547 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCC---------CCcccCceEEEE-CCEEEEEEE
Confidence 5778888999999999999999999988752 112222356666 666 44443
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=5e-06 Score=90.90 Aligned_cols=246 Identities=13% Similarity=0.086 Sum_probs=152.1
Q ss_pred EEeCCEEEEEe-CCcEEEEECCCCeEEEEEcCCCC----CeE-EEEEcC---CC--eEEEEe------CCCeEEEEeCCC
Q 006126 383 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IAT-YFILLP---QD--LFAFGF------DDSSILVHCPCT 445 (660)
Q Consensus 383 ~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~----~v~-~v~~sp---~~--~l~s~~------~d~~I~iwd~~~ 445 (660)
++.+..++.++ ++.|..+|..+|+.+........ .+. ...... +| .+++++ .++.|+.+|..+
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34466777777 99999999999999887653321 111 111112 23 555554 378999999999
Q ss_pred CceeeEeeccCCCe-----------------------------------------EEEEEeCCCCEEEEEeC--------
Q 006126 446 KKTKAKLKGHQNRI-----------------------------------------TCLAYSLSLNVLVSSGA-------- 476 (660)
Q Consensus 446 ~~~~~~~~~~~~~v-----------------------------------------~~l~~sp~~~~l~s~s~-------- 476 (660)
|+.+-........+ ..++++|+...++.++.
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 98876543211000 13466777777776663
Q ss_pred ------------C----CcEEEEEcCCCeeeeceeeeeeeeccC-----CCCCCeEEEEEe-cCCc---EEEE-EecCcE
Q 006126 477 ------------D----AQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLS-IHEGQI 530 (660)
Q Consensus 477 ------------d----g~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s-p~~~---~l~~-~~d~~i 530 (660)
| +.|..+|.++|+..-..... .|. .....+ -+... .+|+ .++. +.+|.+
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~-l~~~~~~~G~~~~~v~~~~~~G~l 348 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT----PNDAWDFSGNNELV-LFDYKAKDGKIVKATAHADRNGFF 348 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS----TTCCSCCCCCCCCE-EEEEECSSSCEEEEEEEECTTSEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC----CCCcccccCCCCcE-EEeeecCCCCEEEEEEEECCCceE
Confidence 2 57999999998765432221 111 000111 12222 4674 4555 488999
Q ss_pred EEEeCCCCceeeeecCCCC-----------CCC--------------------------------eEEEEEccCCCEEEE
Q 006126 531 DVYEAPTLNHTSQLVPDKM-----------DLP--------------------------------ITYATYSCDGKCIYV 567 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~-----------~~~--------------------------------v~~~~~s~dg~~l~s 567 (660)
+++|.++|+.+..+..... ..+ -..++++|+...+++
T Consensus 349 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv 428 (582)
T 1flg_A 349 YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYV 428 (582)
T ss_dssp EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEE
T ss_pred EEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEE
Confidence 9999999998765543210 000 013567776666555
Q ss_pred Ee---------------------------------cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 568 SC---------------------------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 568 g~---------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
.. .+|.|+-||+.+|+.+....... +.+...+. . .
T Consensus 429 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-a 496 (582)
T 1flg_A 429 PANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-A 496 (582)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-T
T ss_pred echhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-C
Confidence 43 25789999999999988776421 11111122 1 3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeccCCCCc
Q 006126 615 PNRIALGLTNGRVHVIEPLESEVEWGKLPFT 645 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~ 645 (660)
+.+++.++.||.++.||..+|+..|....+.
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 5678889999999999999999999766553
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=3.6e-06 Score=81.30 Aligned_cols=201 Identities=12% Similarity=0.044 Sum_probs=132.4
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 389 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l 389 (660)
.....++|+|+|...++.+. ++.|.+.|..+++. +..... +.......+++.++.|
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------~~~i~l-~~~~fgeGi~~~g~~l 78 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------ENIHKM-DDSYFGEGLTLLNEKL 78 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------EEEEEC-CTTCCEEEEEEETTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------EEEEec-CCCcceEEEEEeCCEE
Confidence 34689999999754444443 46887777666543 222211 1112233566666677
Q ss_pred EEEe--CCcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeEeeccC-----CCeE
Q 006126 390 FSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRIT 460 (660)
Q Consensus 390 ~s~~--dg~I~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~~-----~~v~ 460 (660)
..+. ++.+.++|..+++.+.++... ... ..+++|| .++++..++.|.++|..+.+.+..+.-.. ..++
T Consensus 79 yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 79 YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 7766 799999999999999998643 222 3356688 66666678899999999988887765321 2467
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee----ccCCCCCCeEEEEEecCCcEEEE-E-ecCcEEEEe
Q 006126 461 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYE 534 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~-~-~d~~i~iwd 534 (660)
.+.|. +|...+....++.|.+.|..+++......+..... ...+.....+.++|+|+++.+++ + ..+.|.+.+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 88888 77555555567899999999987655444321100 00000025689999999987777 5 567888888
Q ss_pred CCCC
Q 006126 535 APTL 538 (660)
Q Consensus 535 ~~~~ 538 (660)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7543
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=4.7e-06 Score=78.82 Aligned_cols=200 Identities=12% Similarity=0.023 Sum_probs=127.4
Q ss_pred eEEEEEcCCC--CCeEEEEEcCCC-eEEEEeCC--CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEE-EEeCCCc
Q 006126 406 QTLATFANPP--PIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ 479 (660)
Q Consensus 406 ~~~~~~~~~~--~~v~~v~~sp~~-~l~s~~~d--~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~dg~ 479 (660)
+.+.++ .|. .....+.|++ + ++.+.+.+ +.|+.+|+.+++.+....-.. ........+++..|. ..-.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCE
Confidence 445555 343 3356788886 6 66666665 489999999999988876432 222222333344444 4456889
Q ss_pred EEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEEEEeCCCCceeeeecCCCCC---CCeEE
Q 006126 480 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 555 (660)
Q Consensus 480 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~ 555 (660)
+.+||..+.+.+...+.. . .- ..+.+++..|+++ .++.|.++|..+.+.+.++....+. ..++.
T Consensus 87 v~v~D~~tl~~~~ti~~~-----~-----~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYP-----G-----EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEETTTTEEEEEEECS-----S-----CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCcCcEEEEEeCC-----C-----Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999997655443332 1 11 2334567777765 5788999999999988888764322 34556
Q ss_pred EEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCc---CcccceEEEEEecCCCCEEEEEe
Q 006126 556 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI---SLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 556 ~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.... ...-..+.++|+| +++.|...+
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTG 222 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTG 222 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEE
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEEC
Confidence 6665 666554444578999999999999999986644322100 1111234999999 455544444
No 255
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.77 E-value=4.5e-07 Score=96.60 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=127.6
Q ss_pred CC-eEE-EEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEE-e-CCCCEEEEEeC------------------CCcEEE
Q 006126 426 QD-LFA-FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSGA------------------DAQLCV 482 (660)
Q Consensus 426 ~~-~l~-s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~-s-p~~~~l~s~s~------------------dg~i~v 482 (660)
|| +++ +...++.|.+.|+.+.++...+.- ....+..+.+ + |+++++++++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 77 444 444566899999999998875542 2345788888 5 99999988852 457999
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec----------------------------------
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------------------------------- 527 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d---------------------------------- 527 (660)
+|..+.+......+ + +....++++|+|+++++ +.+
T Consensus 180 ID~~t~~v~~qI~V-----g-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 180 VDADKWEVAWQVLV-----S-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EETTTTEEEEEEEE-----S-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EECCCCeEEEEEEe-----C-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 99998554333222 2 22346789999999988 422
Q ss_pred ----CcEEEEeCCC--Cce-eeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe------------eEEE
Q 006126 528 ----GQIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE------------LRCQ 587 (660)
Q Consensus 528 ----~~i~iwd~~~--~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~------------~~~~ 587 (660)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++. +..|.++|+.+.+ ....
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 1377778776 444 444533 345668999999998887664 6899999999653 2222
Q ss_pred eecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 588 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 588 ~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
+. .| .....++|+| +|...++.--|+.|.+|++.+
T Consensus 327 v~------vG-----~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PE------LG-----LGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CB------CC-----SCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred cC------CC-----CCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 21 12 1245799999 785556777899999999977
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.74 E-value=1.5e-06 Score=82.84 Aligned_cols=184 Identities=11% Similarity=0.077 Sum_probs=125.0
Q ss_pred CCeEEEEEeCCE-EEEEe-CCcEEEEECCCCeEEEEEcCCCCCeE--EEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 377 DSISCFALRGSH-LFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 377 ~~v~~v~~s~~~-l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~--~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
.....+.|+++. ..+.+ +|.|+++|+++++.++.+ -. .... .+++..+...+....++.+.+||..+.+.+.++
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 345788888444 44555 789999999999998887 32 2332 344433324444557889999999999999988
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 531 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~ 531 (660)
.... .-..+ .+|++.|+.+..++.|.++|..+.+......+..-.... ..++.+.|. +|+..+.. .++.|.
T Consensus 133 ~~~~-eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v----~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSG-EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV----ELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSS-CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCC-ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc----ccccccEEe-CCEEEEEECCCCeEE
Confidence 7432 22333 357888888777899999999997765554443111111 245677877 77655445 678999
Q ss_pred EEeCCCCceeeeecCC-----------CCCCCeEEEEEccCCCEEEEEec
Q 006126 532 VYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 532 iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
+.|.++++.+..+... ......+.++|+|+++.|+..+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999988776542 11346788999998765555443
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=0.00037 Score=79.40 Aligned_cols=333 Identities=11% Similarity=0.012 Sum_probs=193.9
Q ss_pred EecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCC----CCCCCCeEEEEEec--CCCEEEEEECCCcEEEEeccC
Q 006126 269 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQS 342 (660)
Q Consensus 269 ~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~----~~h~~~V~~~~~sp--dg~~l~s~s~dg~i~vw~~~~ 342 (660)
...++|..|..|+.++.+..||..+ ..+..+.... ......|+++.... +|. |..++.++.+..|+..+
T Consensus 72 ~~d~~g~~lWigt~~~Gl~~~d~~~----~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~ 146 (781)
T 3v9f_A 72 YTDPVQPVIWIATQRAGLNAYNYET----QSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIAT 146 (781)
T ss_dssp EECSSSSEEEEEESSSCEEEEETTT----TEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTT
T ss_pred EEcCCCCEEEEEeCCCCcceECCCC----CeEEeeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCC
Confidence 3345565477788875689999873 4555442110 00134688988887 776 45566445566677654
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-------C
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-------N 413 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~ 413 (660)
... ..+...... .-....|.++... ...|..+. ++-+..||..+++...... .
T Consensus 147 ~~~-----------~~~~~~~~~-------~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l 208 (781)
T 3v9f_A 147 GKF-----------THYNKSTVP-------ALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSL 208 (781)
T ss_dssp TEE-----------EEESTTTCT-------TCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------
T ss_pred CeE-----------EeeccCccc-------CCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccC
Confidence 432 112111000 0123458888877 66666677 5579999988775533211 1
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeec-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126 414 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486 (660)
Q Consensus 414 ~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~ 486 (660)
....|.++...++|.|..|+.+ -+.+||..+++....... ....|.++...++|. |..|+..+-|.++|..
T Consensus 209 ~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 209 PGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 2356888888888855556655 688999877654322111 235689998888775 4556665678899988
Q ss_pred CCeeeecee--ee---eeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeec--------CCCCCCCe
Q 006126 487 GWKKLCSKF--LH---SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV--------PDKMDLPI 553 (660)
Q Consensus 487 ~~~~~~~~~--~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~v 553 (660)
++....... +. .......-....|.++...++|..-+...++.|..++..+.... .+. ..-....|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcce
Confidence 754221111 00 00000000115799999999998776667888999998765432 221 11124568
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 554 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 554 ~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
.+++..++|.+. .|+.++-|..|+..+++.... ... .+-....|+ ++...+ ++.+.+ |+.++.|..++..
T Consensus 366 ~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~-~~~----~~~~~~~v~--~i~~d~-~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 366 SSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYN-KEN----RELLSNSVL--CSLKDS-EGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp EEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC----------CCCSBEE--EEEECT-TSCEEE-EETTEEEEEECSS
T ss_pred EEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEc-cCC----CCCCCcceE--EEEECC-CCCEEE-EeccCCEEEEcCC
Confidence 999988888755 555566699999876543221 110 011123344 777766 566554 6666778999887
Q ss_pred CCce
Q 006126 634 ESEV 637 (660)
Q Consensus 634 ~~~~ 637 (660)
+++.
T Consensus 436 ~~~~ 439 (781)
T 3v9f_A 436 LKKF 439 (781)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 7654
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.72 E-value=2.1e-06 Score=81.86 Aligned_cols=184 Identities=12% Similarity=0.043 Sum_probs=125.1
Q ss_pred eEEEEEe-CCEEEEEe-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEe
Q 006126 379 ISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 379 v~~v~~s-~~~l~s~~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~ 452 (660)
...+.|+ +.+..+++ +| .|+++|+.+++.++.+..... .......+++ ..+..-.++.+.+||..+.+.+.++
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 4788888 54555555 55 899999999999988864433 2222233344 3344456889999999999999988
Q ss_pred eccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCcEE
Q 006126 453 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 531 (660)
Q Consensus 453 ~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~i~ 531 (660)
.... ....++++++.|+.+..++.|.++|..+.+......+. ..+... ..++.+.|. +|+..+.. .++.|.
T Consensus 124 ~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 124 NYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp ECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred ECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence 7432 22334457777777666788999999997665544433 111110 245567776 67655545 678999
Q ss_pred EEeCCCCceeeeecCCC----------CCCCeEEEEEccCCCEEEEEecC
Q 006126 532 VYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 532 iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
+.|.++++.+..+.... .....+.++|+|+++.|+..+..
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 99999999988875421 12456889999998887776653
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=0.00012 Score=83.54 Aligned_cols=327 Identities=12% Similarity=0.016 Sum_probs=192.9
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCCCcceeeeec-----------CCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEec
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 340 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l-----------~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~ 340 (660)
++| .|..|+..+-+.++|..+ ..+..+.. +.......|.++...++|. |-.|+.++-|..|+.
T Consensus 267 ~~g-~lWigt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 267 KDN-KLWIATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp TTS-EEEEEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred CCC-CEEEEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 444 455566656678888763 22222111 0111356799999999987 566776777777776
Q ss_pred cCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEE---cCCC
Q 006126 341 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF---ANPP 415 (660)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~---~~~~ 415 (660)
..... ..+......... ..-....|.++... ...|..|+ ++-|..||..++...... ....
T Consensus 341 ~~~~~-----------~~~~~~~~~~~~---~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 341 APPTF-----------HTWSYSPTQMNE---SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp SCCSC-----------EEEC----CCCS---SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred CCCcc-----------eeeccCcccccc---CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 54432 112110000000 00133568888888 45566666 677999998765432211 1234
Q ss_pred CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEee--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec
Q 006126 416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 493 (660)
Q Consensus 416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~ 493 (660)
..|.++...++|.|..|+.++-+..+|..+++...... .....|.++...++|.+.+ |+. +-|..||..+++....
T Consensus 407 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~ 484 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHH 484 (781)
T ss_dssp SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEE
T ss_pred cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEec
Confidence 57888888877866667877789999987765433221 1346789998888876544 555 5688999887542111
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC--CCCCCeEEEEEccCCCEEEEEecC
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
.... ...... ..|.++...++|...+.+.++.+..||..+++. ..+... -....|.++..+++|.+.++.. +
T Consensus 485 ~~~~-~~~~~~---~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 485 YDTS-NSQLLE---NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp ECTT-TSSCSC---SCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-T
T ss_pred ccCc-cccccc---ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-C
Confidence 0000 000001 478999999999887776656688899876543 333211 1245789999999998666554 6
Q ss_pred CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 572 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 572 g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
|.|..||..+++.. .+.... |-....++ ++...+ +|.+.+++ .+| |..+++.+.+
T Consensus 559 Glv~~~d~~~~~~~-~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~t-~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ-VFQRKE----GLPNTHIR--AISEDK-NGNIWAST-NTG-ISCYITSKKC 613 (781)
T ss_dssp EEEEESCTTTCCCE-EECGGG----TCSCCCCC--EEEECS-SSCEEEEC-SSC-EEEEETTTTE
T ss_pred CceEEECCCCCcEE-EccccC----CCCCceEE--EEEECC-CCCEEEEc-CCc-eEEEECCCCc
Confidence 65589998877633 332211 21123344 777777 67766654 444 7777877654
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=1.6e-05 Score=80.17 Aligned_cols=233 Identities=11% Similarity=-0.015 Sum_probs=144.6
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCC-------------------CCCeEEEEEcC-CCeEEEEeCC
Q 006126 379 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-------------------PPIATYFILLP-QDLFAFGFDD 435 (660)
Q Consensus 379 v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp-~~~l~s~~~d 435 (660)
..++++. +++++++. ++.|..|+..+++........ ......+++.+ ++.|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4456777 56566666 789999998765543211100 12467899998 5656666555
Q ss_pred CeEEEEeCCCCceeeEeec-----cCCCeEEEEEeC-CCCEEEEEeC-----------------CCcEEEEEcCCCeeee
Q 006126 436 SSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKLC 492 (660)
Q Consensus 436 ~~I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp-~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~ 492 (660)
+.|..+|..++.. ..+.. .......+++.+ +|+..++... ++.|..||..+++...
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6688999876542 22221 123578899999 9987776432 3678889987654211
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCCc--eeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
...+- .....++++|+|+.|+++ ..+.|.+|++.... ....+.. ..+ ...++++++|++.++.
T Consensus 180 ------~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 180 ------LLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp ------EEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEE
T ss_pred ------eccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEe
Confidence 11111 245679999999977764 55789999986421 1122211 123 7889999999977766
Q ss_pred ec----------CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 569 CK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 569 ~~----------dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
.. .+.|..+|.. ++.+..+.... |..-. .+..+++ . ++.++++....+.|.++++..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~~~--~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFAGE--HFEQIQE-H-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTTTS--CCCEEEE-E-TTEEEEECSSCSEEEEEEC--
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCccc--cceEEEE-e-CCEEEEeecCCCceEEEeccc
Confidence 54 4678889874 77776665321 11011 2335655 3 566677766788999999864
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.62 E-value=1.5e-05 Score=75.36 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=125.8
Q ss_pred CCCeEEEEEe-CCEEEEEe-C--CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCCeEEEEeCCCeEEEEeCCCCceee
Q 006126 376 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 376 ~~~v~~v~~s-~~~l~s~~-d--g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
......+.|+ +.+..+++ + +.|+.+|+.+++.++.+....... -.++...+......-.++.+.+||..+.+.+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3456788999 54445555 4 489999999999998886443321 23444332244455678899999999999999
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecCc
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 529 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~~ 529 (660)
++..... -..+ .+++..|+.+..++.|.++|..+.+......+..-.... ..++.+.+. +|+..+.. .+..
T Consensus 100 ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 100 RFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCe
Confidence 8874332 2344 456777777777889999999997665544443111111 245667766 66655445 6789
Q ss_pred EEEEeCCCCceeeeecCCC-----------CCCCeEEEEEccCCCEEEEEec
Q 006126 530 IDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 530 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
|.+.|.++++.+..+.... .....+.++++|+++.|+..+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999888765321 1246688999998877766654
No 262
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.61 E-value=2.3e-08 Score=76.46 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc--------HHHHHHHHhcC-chHhHHHhhhh
Q 006126 63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--------INYFREYITSG-EWDNAEKYLSA 119 (660)
Q Consensus 63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~--------~~~l~~~i~~G-~w~~~~~~l~~ 119 (660)
..++||++||++||+|.||.+||++|++||+|... ...|...|++| .|.+++..+..
T Consensus 3 itsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~ 68 (90)
T 2xtc_A 3 ITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINE 68 (90)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999999999998762 68888888888 67777776654
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=5.8e-05 Score=75.98 Aligned_cols=245 Identities=11% Similarity=-0.003 Sum_probs=147.9
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCcee---------eecccCCCCCCeEEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM---------TNDIAADPKDSISCF 382 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~v~~v 382 (660)
....+++|.++|+.+.++..++.|..|+..+... ..|.......- .... .....+..+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~gi 85 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKR--PLCGRTYDI 85 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGH--HHHCCEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhcc--ccCCCCceE
Confidence 4567788999998777888888998887665433 12211000000 0000 011346788
Q ss_pred EEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcC-CC-eEEEEeC-----------------C
Q 006126 383 ALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------D 435 (660)
Q Consensus 383 ~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~-----~~~~v~~v~~sp-~~-~l~s~~~-----------------d 435 (660)
++. +..|+.+. .+.|..+|..++.. ..+.. .......+++.+ +| ..++... +
T Consensus 86 ~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 86 SYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 887 45677776 55688888776543 22211 123467899999 88 4444322 3
Q ss_pred CeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE
Q 006126 436 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 514 (660)
Q Consensus 436 ~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 514 (660)
+.|..||..+++...... .......++|+|+|+.|+.+ +..+.|.+|++...... ... .... .+ + ...++
T Consensus 165 g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---~~~-~~~~-~~--g-P~gi~ 235 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---TAE-VLVK-IP--N-PGNIK 235 (322)
T ss_dssp EEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---CEE-EEEE-CS--S-EEEEE
T ss_pred ceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---ccc-eEEe-CC--C-CCCeE
Confidence 679999987775433222 22345679999999866555 55689999998753210 011 1111 11 3 67899
Q ss_pred EecCCcEEEEE-e----------cCcEEEEeCCCCceeeeecCCCC--CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 515 FHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 515 ~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+.++|++.++. . .+.|..+|. .++.+..+..... ...++.+++ .++++.++...++.|.++++..
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 99999877764 4 467889987 5777776654211 234666666 4565555555678898888764
No 264
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.51 E-value=0.00094 Score=67.19 Aligned_cols=276 Identities=9% Similarity=0.086 Sum_probs=152.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEE
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 389 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l 389 (660)
...+.++.|.+++..++ ++.+|.|. +..+.++ -|....... ......+.++.+. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~-------------tW~~~~~~~------~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQ-------------TWEPRTLVL------DHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTS-------------SCEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCC-------------CCeECCCCC------CCCCccEEEEEecCCeEE
Confidence 45799999988887666 55666552 2222221 122111000 0123457888888 5555
Q ss_pred EEEeCCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCceeeE-eeccCCCeEEEEE
Q 006126 390 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAY 464 (660)
Q Consensus 390 ~s~~dg~I~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~~~-~~~~~~~v~~l~~ 464 (660)
+.+..+.|.. ..+.|+.-.... .....+..+.+.+++ .++++ .++.|..- ...|+.-.. ...+...+..+.+
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5544675543 333343333322 233457778877777 55544 45654332 122332222 2345567899999
Q ss_pred eCCCCEEEEEeCCCcEEEEEc--CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee
Q 006126 465 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 542 (660)
Q Consensus 465 sp~~~~l~s~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~ 542 (660)
.|++.+++++...+..+-+|- .+++. +. .... ..+..+.+.+++..++++.+|.+++.+...++.-.
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG~tW~~-----~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQTAWEP-----HN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTCSSCEE-----EE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cCCCcEEEEECCCcEEEEeCCCCCceeE-----CC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 999888776654443444442 33221 11 1122 46889999999988877888888877533244333
Q ss_pred eecCC--CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEE
Q 006126 543 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 620 (660)
Q Consensus 543 ~~~~~--~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s 620 (660)
.+... .+...+.++++.+++..++++. +|.| .+..+.|+.-..+.... +. ...++ ++.|.+ ++ .++.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~-~~~~~--~v~~~~-~~-~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KV-PSNFY--KILFFS-PD-QGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TS-SSCCC--EEEEEE-TT-EEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CC-CCCeE--EEEEEC-CC-ceEE
Confidence 33211 1234588999998888777664 6766 44555554333332110 00 12345 788876 44 5667
Q ss_pred EeCCCeEEEEeC
Q 006126 621 GLTNGRVHVIEP 632 (660)
Q Consensus 621 ~s~Dg~v~iw~~ 632 (660)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778998776654
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.49 E-value=0.00034 Score=71.19 Aligned_cols=232 Identities=12% Similarity=0.012 Sum_probs=144.2
Q ss_pred EEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCC
Q 006126 381 CFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 457 (660)
Q Consensus 381 ~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~ 457 (660)
|.+.. ..+|+.+....|+..++........+.. ......++|++.+ ++++-...+.|..+++..+.....+.....
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 116 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 116 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCC
Confidence 33333 4556666666788888876555444433 3457799999765 555656778999999886654443333334
Q ss_pred CeEEEEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEE
Q 006126 458 RITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVY 533 (660)
Q Consensus 458 ~v~~l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iw 533 (660)
....+++.+.+..| ++-...+.|.+.++..... ..+..... .....++++|.+..|+.+ .. +.|..+
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------EEEEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 56789999855554 5555578899999876321 11121222 357899999976666653 44 779999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEec
Q 006126 534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 612 (660)
Q Consensus 534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp 612 (660)
++. +.....+... .-.....++++|++..|+.+.. .+.|..+++........+... .-....+++.
T Consensus 188 ~~d-G~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav~- 254 (349)
T 3v64_C 188 SMD-GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF- 254 (349)
T ss_dssp ETT-SCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEEE-
T ss_pred eCC-CCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEEE-
Confidence 885 4433343221 2456789999988777776544 578999998754333332210 1123356663
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 613 LEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++..+++-...+.|..++..+|+
T Consensus 255 -~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 255 -EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCC
T ss_pred -CCEEEEecCCCCeEEEEEccCCC
Confidence 45566666677888888865554
No 266
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.0003 Score=70.47 Aligned_cols=227 Identities=11% Similarity=-0.017 Sum_probs=140.7
Q ss_pred EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC---Cceee-EeeccCCCeEE
Q 006126 388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT---KKTKA-KLKGHQNRITC 461 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~---~~~~~-~~~~~~~~v~~ 461 (660)
+|+.+....|+..|+.+.+....+. .......++|++.+ .+++....+.|..+++.. +.... .+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4566666789999998876555443 34556799999866 555666678999999876 12222 23222245678
Q ss_pred EEEeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCC
Q 006126 462 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 537 (660)
Q Consensus 462 l~~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~ 537 (660)
+++++.+..| ++-...+.|.++|+..... ..+..... .....++++|.+..|+.+ .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 9998755544 4555678999999875321 11122111 367899999976666553 32 689888884
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
|.....+... .-.....+++++++..|+.+. ..+.|..+|+............ ...-....+++. .+.
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~--------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEE--TTE
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC--------CccCCcEEEEEE--CCE
Confidence 5544444321 245678999999887777665 4578999999754332222210 011123356664 355
Q ss_pred EEEEEeCCCeEEEEeCCCCc
Q 006126 617 RIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~~ 636 (660)
++++....+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 66666677889999886664
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.43 E-value=0.00025 Score=73.25 Aligned_cols=227 Identities=11% Similarity=0.002 Sum_probs=143.0
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
..+|+.+....|+.+++.......... .......++|++.+ ++++-...+.|..+++..+.....+.........++
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 456666666788888887665544443 33457789999765 555666778999999886654443333334567788
Q ss_pred EeCCCCEE-EEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec-CcEEEEeCCCCc
Q 006126 464 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN 539 (660)
Q Consensus 464 ~sp~~~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d-~~i~iwd~~~~~ 539 (660)
+.+.+..| ++-...+.|.+.++..... ..+..... .....++++|.+..|+.+ .. +.|..+++. +.
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~------~~l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~ 235 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHR------KVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GS 235 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSC------EEEECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCce------EEeecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CC
Confidence 99855554 4445567888888875221 11122221 357899999977776664 34 679999885 44
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 618 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 618 (660)
....+... .-.....++|+|++..|+.+. ..+.|..+++........+.. + .-....+++. ++.++
T Consensus 236 ~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------~----~~~P~giav~--~~~ly 302 (386)
T 3v65_B 236 GRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF--EDSLY 302 (386)
T ss_dssp SCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------S----CSSEEEEEEE--TTEEE
T ss_pred CcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------C----CCCceEEEEE--CCEEE
Confidence 33343221 245578999998777776654 457899999875443333221 1 1123466663 45666
Q ss_pred EEEeCCCeEEEEeCCCCc
Q 006126 619 ALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 619 ~s~s~Dg~v~iw~~~~~~ 636 (660)
++....+.|..++..+|+
T Consensus 303 ~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EeeCCCCeEEEEECCCCc
Confidence 676677889888865554
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.43 E-value=0.00031 Score=70.03 Aligned_cols=223 Identities=12% Similarity=-0.029 Sum_probs=134.9
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEE
Q 006126 312 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 389 (660)
Q Consensus 312 ~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l 389 (660)
.....++|+++|+.+++-..++.|..|+...... ..|. .......+++. ++++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~--------------~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------IHAT--------------VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------EEEe--------------CCCCceeEEEcCCCcEE
Confidence 5678999999999666655678887776543211 1111 12347788888 6654
Q ss_pred EEEe-CC--cEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCce-eeEee---------c
Q 006126 390 FSAS-GG--KISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 454 (660)
Q Consensus 390 ~s~~-dg--~I~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~-~~~~~---------~ 454 (660)
++.. .+ .|..+|..+++....... .......++..+++ .+++...++.|+++|..+++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4443 22 477778788776443322 22233455555666 555555688999999876421 11110 1
Q ss_pred cCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC-CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEE
Q 006126 455 HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 531 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~ 531 (660)
.-...+.+ +|+++.|+.+ +..+.|..||+.. +.......+ ... .....++++++|++.++ ...+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~---~~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF---VEQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE---EES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE---ecc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 7888766554 4568899999875 322111111 111 23557899999987666 3578899
Q ss_pred EEeCCCCceee--eecCCCCCCCeEEEEEc---cCCCEEEEEecCC
Q 006126 532 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 572 (660)
Q Consensus 532 iwd~~~~~~~~--~~~~~~~~~~v~~~~~s---~dg~~l~sg~~dg 572 (660)
++|.. ++... .+.. .....++++|. |+++.|+..+..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99974 65532 2322 13668999998 8988887766543
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.40 E-value=0.00096 Score=66.73 Aligned_cols=203 Identities=7% Similarity=-0.046 Sum_probs=126.5
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEECCC---CeE-EEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC
Q 006126 376 KDSISCFALR--GSHLFSAS--GGKISIFSLET---FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~---~~~-~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~ 445 (660)
......++|+ ++.|+.+. .+.|..+++.. +.. ...+.........+++.+.+ +.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3457788998 56666666 58999999876 122 22233222345688898755 555656788999999875
Q ss_pred CceeeEeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
......+.........++++|.+..|+.+... +.|...++..... .. +..... .....++++|++..|+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~---~~~~~~---~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EE---EECSSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EE---EEECCC---CCceEEEEeccCCEEE
Confidence 43333333344567899999976666655543 6888888865211 11 111111 4678999999887777
Q ss_pred EE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 524 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 524 ~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+ ..+.|..+|+. +.....+.. .........+++. .+..+++-...+.|..++..+|+....+.
T Consensus 180 ~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 64 56789999986 433333322 1123456788885 34455555567899999988877665554
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00022 Score=71.09 Aligned_cols=228 Identities=10% Similarity=-0.004 Sum_probs=133.6
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeC-CC-eEEEEeCCCCceee
Q 006126 377 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS-SILVHCPCTKKTKA 450 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-d~-~I~iwd~~~~~~~~ 450 (660)
.....++|+ +.++++-. ++.|..||.... ....+. .......+++.++| ++++... ++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456788898 55555544 789999998753 333333 23467889999999 5554433 33 57778877776543
Q ss_pred Eeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec--ee-eee-eeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126 451 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 525 (660)
Q Consensus 451 ~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~-~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~ 525 (660)
.... .......++..+++..+++-..++.|..+|..++..... .. +.. ...+.. ...+.+ +|+++.|+++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 3221 223345555555555455544688999999876421100 00 000 000111 234455 8888887774
Q ss_pred --ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 526 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 526 --~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
..+.|..||+.. ++. ...+.. ......++++++|++.++....+.|.+++.. ++........ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~ 252 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q 252 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence 567899999864 332 112211 1345678999999887777777899999975 6543321111 1
Q ss_pred cccceEEEEEe---cCCCCEEEEEeCC
Q 006126 601 LELYPLVIAAH---PLEPNRIALGLTN 624 (660)
Q Consensus 601 ~~v~~~~v~~s---p~d~~~l~s~s~D 624 (660)
....+.+++|. | ++..|..++..
T Consensus 253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred ccCCceEEEEecccC-CCCEEEEECCC
Confidence 11235589998 7 66666555543
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.36 E-value=0.0014 Score=66.57 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=128.9
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee
Q 006126 377 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
..+..++|+ ++.|..+. .+.|..+++..+.....+.........+++.+.+ ++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347788988 56666665 6889999988665444443333445688898755 55666667899999987543333
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 526 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~ 526 (660)
.+...-.....++++|.+..|+... .. +.|..+++..... ..+..... .....++++|++..|+.+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCC---CCcceEEEeCCCCEEEEEECC
Confidence 3333445678999999666655544 34 7788888875221 10111111 357899999977777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+.|..+|+. +.....+... .......+++ ..+...++-...+.|..++..+|+....+.
T Consensus 224 ~~~I~~~~~d-G~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLD-GSHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETT-SCSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCC-CCceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999985 4333333221 2455678888 344455555567889999977776665554
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=4e-05 Score=85.48 Aligned_cols=235 Identities=10% Similarity=-0.010 Sum_probs=124.5
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCC-eEEEEe-CC-----CeEEEEeCCC
Q 006126 378 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGF-DD-----SSILVHCPCT 445 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~-~~v~~v~~sp~~-~l~s~~-~d-----~~I~iwd~~~ 445 (660)
...++++. +..++.|+ ++.+.+||..+.+....-..+. ..-.+++..++| +++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 34445555 77778887 4689999998775443322121 122355666788 777777 44 4799999987
Q ss_pred CceeeEe----eccCCCeEEEEEeCCCCEEEEEeCCC---------cEEEEEcCCCeeeeceeeeeeeecc--CCCCCCe
Q 006126 446 KKTKAKL----KGHQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIV 510 (660)
Q Consensus 446 ~~~~~~~----~~~~~~v~~l~~sp~~~~l~s~s~dg---------~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v 510 (660)
++-...- ......-....+..++..++.++.+| .+..||..+..-.. .......++ .+....-
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTC
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCC
Confidence 6533210 00000000011223455555555443 56788887743221 111011100 0000123
Q ss_pred EEEEEec-CCcEEEEE-ecC-----------cEEEEeCCCCceeeeecCCCC-CCCeEEEEEccCCCEEEEEecC-----
Q 006126 511 NHIQFHP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKS----- 571 (660)
Q Consensus 511 ~~~~~sp-~~~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~sg~~d----- 571 (660)
.++.|.. +++.+++| .++ .|.+||..+............ ...-.+++..|+|++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 3455544 66666664 322 688889877665433201111 2223345667899999999864
Q ss_pred ------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC
Q 006126 572 ------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 623 (660)
Q Consensus 572 ------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~ 623 (660)
..+.+||..+.+-.. +.... . ...+..+....| ++++++.||.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~-~~~~~-~------~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYK-QNPNS-I------VRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEE-CCCCS-S------CCCTTEEEEECT-TSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceee-cCCCC-C------ccccccHhhcCC-CcEEEecCCC
Confidence 468999998765332 21111 1 111111345568 8999999985
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=3.1e-05 Score=86.28 Aligned_cols=273 Identities=8% Similarity=0.013 Sum_probs=148.4
Q ss_pred eeeEecC-CCCEEEEEeCCC-----------cEEEEeccCcCCCcceeeee-cCCCCCCCCeEEEEEecCCCEEEEEEC-
Q 006126 266 RESTSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ- 331 (660)
Q Consensus 266 ~~~~~sp-dg~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~~spdg~~l~s~s~- 331 (660)
....+.| +|+.++.|+.+. .+.+||..+ .....+. ++. .+.....++++.++|+.++.|+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t----~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST----GIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT----CCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSS
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC----CcEEeCcccCC-CCCCccccccCCCCCCEEEeCCCC
Confidence 3456777 899999987653 578899874 3322211 211 12333446788899999999985
Q ss_pred CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe--C-----CcEEEEECC
Q 006126 332 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLE 403 (660)
Q Consensus 332 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~--d-----g~I~iwd~~ 403 (660)
+..+.+||..++. |..... +. .......++.+. ++.++.|+ + ..+.+||..
T Consensus 264 ~~~v~~yd~~t~~--------------W~~~~~------~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 264 AKKTSLYDSSSDS--------------WIPGPD------MQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp TTCEEEEEGGGTE--------------EEECCC------CS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CCceEEecCcCCc--------------eeECCC------CC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 4578888776553 221110 00 111222334443 77777776 3 469999998
Q ss_pred CCeEEEEE----cCCCCCeEEEEEcCCC-eEEEEeCC---------CeEEEEeCCCCceeeEeeccC---------CCeE
Q 006126 404 TFQTLATF----ANPPPIATYFILLPQD-LFAFGFDD---------SSILVHCPCTKKTKAKLKGHQ---------NRIT 460 (660)
Q Consensus 404 ~~~~~~~~----~~~~~~v~~v~~sp~~-~l~s~~~d---------~~I~iwd~~~~~~~~~~~~~~---------~~v~ 460 (660)
+.+....- ......-....+..++ .++.|+.+ ..+..||..+.........+. ..-.
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 87644320 0000000011223445 44555444 356788888765443322221 1224
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126 461 CLAYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 527 (660)
Q Consensus 461 ~l~~sp-~~~~l~s~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d 527 (660)
++.|.. +++.+++|+.++ .+.+||..+..-.... ...+... ..-.+++..|+++.+++ |.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBS
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcc
Confidence 444544 677888887532 5778887764311100 0001111 12335677789999988 433
Q ss_pred -----------CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 528 -----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 528 -----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
..+.+||..+.+....-.............+.|||+.++.|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999977654321111111222334556799999999985
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.34 E-value=0.00061 Score=65.27 Aligned_cols=218 Identities=11% Similarity=0.016 Sum_probs=132.4
Q ss_pred EEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 006126 410 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 486 (660)
Q Consensus 410 ~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~ 486 (660)
.+.+-...+..++|+|++ ++++...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 445566679999999987 55667778899999988 888877642 22567889999988777766667889999887
Q ss_pred CCeeeec-eeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ecC--cEEEEeC-CCCceeeee-----cCCCCCCCeEEE
Q 006126 487 GWKKLCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYA 556 (660)
Q Consensus 487 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d~--~i~iwd~-~~~~~~~~~-----~~~~~~~~v~~~ 556 (660)
....+.. .... +..+..+.......++|+|.+..|+++ ... .|+.|+- .....+..+ ....+...+.++
T Consensus 100 ~~~~i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIK-IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEE-CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeec-cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6432111 1111 111101111467899999999777774 333 4555551 011111111 111124567899
Q ss_pred EEccCCC-EEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 557 TYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 557 ~~s~dg~-~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+++|... +++.......|.++|.. |+.+..+...... .|-...--..-.|+|.| +|++.++ ++.+.++++...
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEec
Confidence 9998654 55556666889999976 5566666543100 00000001234899999 8886655 677767666554
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=0.00066 Score=70.09 Aligned_cols=201 Identities=8% Similarity=-0.045 Sum_probs=130.0
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceee
Q 006126 377 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 450 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~ 450 (660)
..+..++|. ++.|+.+. .+.|..+++..+.....+.........+++.+.+ ++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 447788998 56666665 6889999998765444444333344678888755 55666667889999987544333
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 526 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~ 526 (660)
.+.........++++|.+..|+.... . +.|..+++.... ...+..... .....++++|++..|+.+ .
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEEGGGTEEEEEETT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCeeeEEEeCCCCEEEEEECC
Confidence 33334456789999997766665543 3 678888887521 111111111 357899999877777764 5
Q ss_pred cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 527 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 527 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+.|..+|+.. .....+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 267 ~~~I~~~d~dG-~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDG-SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTS-CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCC-CeeEEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 67899999853 333333221 2455678888 344555555567889999977777666665
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.33 E-value=0.0011 Score=68.64 Aligned_cols=230 Identities=10% Similarity=-0.022 Sum_probs=143.8
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCe
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 459 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v 459 (660)
..+|+.+....|+..++........+ .....+..++|++.+ ++++-...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34666666788999998866554444 344567799999866 5555566788999998752 2233333344567
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeC
Q 006126 460 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA 535 (660)
Q Consensus 460 ~~l~~sp~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~ 535 (660)
..+++.+. +++.++-...+.|.+.++..... ..+..... .....+++.|.+.+|+.+ ..+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 88999984 44455555678899999876321 11122111 357899999976666654 2468999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
. |.....+... .-.....+++++++..|+.+.. .+.|..+|+........+... ...-...+++.. .
T Consensus 233 d-G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--E 300 (400)
T ss_dssp T-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--T
T ss_pred C-CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--C
Confidence 5 4443444221 2456889999998887777654 578999998765443333211 011123356653 3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce
Q 006126 615 PNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+.++.+....+.|..++..+|+.
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCc
Confidence 45666666778888888766643
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.28 E-value=6.3e-05 Score=85.11 Aligned_cols=203 Identities=9% Similarity=0.025 Sum_probs=105.6
Q ss_pred EEEEcCCC-eEEEEeCC-----CeEEEEeCCCCce--eeEee-ccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCC
Q 006126 420 YFILLPQD-LFAFGFDD-----SSILVHCPCTKKT--KAKLK-GHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVG 487 (660)
Q Consensus 420 ~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~l~s~s~---dg~i~vwd~~~ 487 (660)
.++|+||| .|+....| ..|+++++.+++. ...+. ........+.|+|||++|+..+. ...|+++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 57899999 66655554 3688899887642 23333 23345678899999999887663 34688889887
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec----CcEEEEeCCCCceeee-ecCCCCCCCeEEEEEccC
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQ-LVPDKMDLPITYATYSCD 561 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d----~~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d 561 (660)
+... ..+..+..+.. ....++.|+.++.+++.+ .+ ..|..+|+.++..... +........+..+.+. .
T Consensus 305 ~~~~--~~~~~l~~~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~ 378 (751)
T 2xe4_A 305 GNAH--NTLEIVRPREK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-S 378 (751)
T ss_dssp CTTC--CCEEESSCCCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-S
T ss_pred CCCC--ceeEEeecCCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-C
Confidence 4210 00011222222 345556555444444445 32 2677788765322223 2222112234455554 2
Q ss_pred CCEEEEEecCCe--EEEEEC-------CCCeeEEEeecccccCCCCcCcccceEEEEE----ecCCCCEEEEEeCC---C
Q 006126 562 GKCIYVSCKSGH--VKVFDT-------STLELRCQINLTAYAQPGTISLELYPLVIAA----HPLEPNRIALGLTN---G 625 (660)
Q Consensus 562 g~~l~sg~~dg~--I~iwd~-------~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~----sp~d~~~l~s~s~D---g 625 (660)
+.++++...++. |+++++ .+++....+.. ....++..+.+ +++...++++.+.. +
T Consensus 379 ~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l---------~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~ 449 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVM---------EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPN 449 (751)
T ss_dssp SEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCC---------CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEE
T ss_pred CEEEEEEEeCCEEEEEEEecccccccccCCccceEECC---------CCceeEEEeccCcccCCCCCEEEEEEeCCCCCC
Confidence 344556666775 556665 34431233321 11122223332 34333455555443 4
Q ss_pred eEEEEeCCCCce
Q 006126 626 RVHVIEPLESEV 637 (660)
Q Consensus 626 ~v~iw~~~~~~~ 637 (660)
.+..+|+.+++.
T Consensus 450 ~~~~~d~~~~~~ 461 (751)
T 2xe4_A 450 TWFDVSPQDHSR 461 (751)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEEEECCCCcE
Confidence 677788776654
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.26 E-value=0.0022 Score=66.38 Aligned_cols=204 Identities=8% Similarity=-0.044 Sum_probs=130.1
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126 375 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 375 h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~ 444 (660)
....+..++|+ ++.|..+. .+.|..+++... .....+.........+++.+.+ +.++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889998 66666666 688999998752 2333333344567789998854 55666677899999987
Q ss_pred CCceeeEeeccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 445 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 445 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
.......+.........++++|.+..|+.... .+.|...++..... ..+..... .....+++++++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l---~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEECCC---CceEEEEEEeCCCEE
Confidence 65444444434456889999997666666553 37888888875221 11111211 367899999988877
Q ss_pred EEE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 523 LSI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 523 ~~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
+.+ ..+.|..+|+.. .....+.. .........+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 774 567899999854 33333322 1123445677773 33444455556889999988887666554
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00096 Score=63.90 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=130.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc
Q 006126 374 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 447 (660)
Q Consensus 374 ~h~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~ 447 (660)
+-...+..++|+ ++.|++.. ++.|...|.. ++.++.+. ......-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 445679999999 56666655 6889999998 88888875 223567788999888 66666677889999876543
Q ss_pred e---eeEee------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee-------ccCCCCCCeE
Q 006126 448 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-------GLVPETTIVN 511 (660)
Q Consensus 448 ~---~~~~~------~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~ 511 (660)
. +.... ..+...-.++|+|.++.|+++.......+|.++. . .....+. +.. .+. ..+.
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~-~~~~~l~-i~~~~~~~~~~~~---~d~S 176 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-L-LSSNELH-ISKDKALQRQFTL---DDVS 176 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-T-TCSSCCE-EEECHHHHHTCCS---SCCC
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-c-ccCCcee-eecchhhcccccc---CCce
Confidence 2 22221 1334568999999998877777665555555541 0 0001111 110 111 3578
Q ss_pred EEEEecCCcEEEE-E-ecCcEEEEeCCCCceeeeecCCC--C-----CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 512 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 512 ~~~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
+++++|....+++ + .++.+..+|. +++.+..+.... + -.....++|+++|+ |+..++.+.+++|....
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 9999997666555 6 6678999997 466665554421 0 23678999999998 55557888888886543
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.19 E-value=0.00095 Score=66.78 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=137.4
Q ss_pred EEEEEeCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCcee-eEeeccCCCeEEE
Q 006126 388 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 462 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~~~--~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~-~~~~~~~~~v~~l 462 (660)
+|+.+....|+.+++.... ....+. .......++|.+.+ ++.+-...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4455556778888887653 111111 12245688999865 5566667789999998766322 2222223456788
Q ss_pred EEeCCCCE-EEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCC
Q 006126 463 AYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL 538 (660)
Q Consensus 463 ~~sp~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~ 538 (660)
++.+.+.. .++-...+.|.++++..... ..+..... .....+++.|.+..|+.+ ..+.|...++. |
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~------~~l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G 154 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLR------KVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G 154 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcE------EEEEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence 99975544 45555678899999876221 11111222 467899999976666654 25789999884 4
Q ss_pred ceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCE
Q 006126 539 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 617 (660)
Q Consensus 539 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~ 617 (660)
.....+... .-.....+++++++..|+.+. ..+.|..+|+.......... + ..-....+++.. +.+
T Consensus 155 ~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~l 221 (318)
T 3sov_A 155 SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DIL 221 (318)
T ss_dssp CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEE
T ss_pred CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEE
Confidence 443343221 145678999999877777654 45889999987543332221 1 011233566644 355
Q ss_pred EEEEeCCCeEEEEeCCCCce
Q 006126 618 IALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 618 l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+.+-...+.|..++..+|+.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCeEEEEECCCCCc
Confidence 56666678899999877653
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.13 E-value=0.00016 Score=81.80 Aligned_cols=194 Identities=11% Similarity=0.045 Sum_probs=112.2
Q ss_pred CeEEEEEc-CCC-eEEEEe-CCC----eEEEEeCCCC-ceee-EeeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEE
Q 006126 417 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 482 (660)
Q Consensus 417 ~v~~v~~s-p~~-~l~s~~-~d~----~I~iwd~~~~-~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~v 482 (660)
.+....|| ||| .|+.+. .+| .|+++|+.++ +.+. .+. .....+.|+|||+.|+....| ..|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 999 666443 333 5999999998 6332 121 113467899999988877765 25888
Q ss_pred EEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E---ecCcEEEEeCCCCc-ee--eeecCCCCCCCeEE
Q 006126 483 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 555 (660)
Q Consensus 483 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~---~d~~i~iwd~~~~~-~~--~~~~~~~~~~~v~~ 555 (660)
+++.++... ... +...... .....+.|+|||++|+. + ....|+++|+.++. .. ..+... ......+
T Consensus 252 ~~lgt~~~~---~~l-v~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSE---DVC-LYEEHNP--LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYD 324 (751)
T ss_dssp EETTSCGGG---CEE-EEECCCT--TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEE
T ss_pred EECCCCchh---cEE-EEecCCC--ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEE
Confidence 888774311 111 1121111 34668899999999987 3 23469999998752 22 333332 2455566
Q ss_pred EEEccCCCEEE-EEecC----CeEEEEECCCC-eeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEE
Q 006126 556 ATYSCDGKCIY-VSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 628 (660)
Q Consensus 556 ~~~s~dg~~l~-sg~~d----g~I~iwd~~~~-~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~ 628 (660)
+.|+. |+.|+ ....+ ..|..+++.++ +... .+. + ...+.+..+.+. .+.++++...||..+
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~--------~~~~~l~~~~~~--~~~lv~~~~~~g~~~ 392 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H--------SEDVFMESIAVR--SNYLVVAGRRAGLTR 392 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C--------CSSEEEEEEEEC--SSEEEEEEEETTEEE
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C--------CCCcEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 66544 55444 44333 36777887653 2222 222 1 222232345443 345566777788655
Q ss_pred --EEeC
Q 006126 629 --VIEP 632 (660)
Q Consensus 629 --iw~~ 632 (660)
++++
T Consensus 393 l~~~dl 398 (751)
T 2xe4_A 393 IWTMMA 398 (751)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 4554
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.0012 Score=69.30 Aligned_cols=246 Identities=11% Similarity=-0.022 Sum_probs=145.9
Q ss_pred CeEEEEEe-C---CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC---C-eEEEEeCCCCc
Q 006126 378 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK 447 (660)
Q Consensus 378 ~v~~v~~s-~---~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d---~-~I~iwd~~~~~ 447 (660)
....++|+ . ..|..+. .+.|+.+|..++..... .........++++++| ++++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 45678887 3 6777776 58999999987776544 3445567899999999 55555422 1 23334432221
Q ss_pred e-eeEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE
Q 006126 448 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 525 (660)
Q Consensus 448 ~-~~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 525 (660)
. ...+. .......++++| +|.+.++-..++.|+.+|..++.... .+. ..+.. .....++|+|+|++|+++
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence 1 01121 223456788999 67766666667889999998654311 111 11111 234579999999977664
Q ss_pred --ecCcEEEEeCC--CCce--eeeecCC-C------------CCCCeEEEEE---------ccCCCEEEEEecCCeEEEE
Q 006126 526 --HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 526 --~d~~i~iwd~~--~~~~--~~~~~~~-~------------~~~~v~~~~~---------s~dg~~l~sg~~dg~I~iw 577 (660)
..+.|+.++.. ++.. ...+.+. . .-.....+++ .++|.+.++-..++.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998865 2321 1122111 0 0234667999 7777777777777899999
Q ss_pred ECCCCeeEEEeecccccCCCCcC-------cccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 578 DTSTLELRCQINLTAYAQPGTIS-------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 578 d~~~~~~~~~~~~~~~~~~gh~~-------~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
+. +|......-.......|..+ .--+...++++|.++.++++-...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56544333210000001101 112356899995377777777777888888764
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.0023 Score=67.03 Aligned_cols=244 Identities=9% Similarity=-0.028 Sum_probs=141.0
Q ss_pred CeEEEEEe---CCEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-C----eEEEEeCCCCc
Q 006126 378 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S----SILVHCPCTKK 447 (660)
Q Consensus 378 ~v~~v~~s---~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-~----~I~iwd~~~~~ 447 (660)
....++++ +..|..+. .+.|+.+|+.++...... ........++|+++| .|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 34567776 25666666 588999999876654443 345567899999999 56666542 1 3444443 332
Q ss_pred ee--eEeeccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 448 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 448 ~~--~~~~~~~~~v~~l~~sp-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
.. ..+.. ......++++| +|.++++-..++.|..+|..++... .+. ..+.. .....++|+|+|++|++
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~--~~~~~---~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLF--TIQDS---GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEE--ECSSS---SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--EcCCC---CcceeEEEcCCCCEEEE
Confidence 22 22221 23456788999 7777766667889999999875421 111 11111 35778999999997666
Q ss_pred E--ecCcEEEEeCCC--Cce--eeeecCC-C------------CCCCeE-EEEEc--------cCCCEEEEEecCCeEEE
Q 006126 525 I--HEGQIDVYEAPT--LNH--TSQLVPD-K------------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV 576 (660)
Q Consensus 525 ~--~d~~i~iwd~~~--~~~--~~~~~~~-~------------~~~~v~-~~~~s--------~dg~~l~sg~~dg~I~i 576 (660)
+ ..+.|..++... +.. +..+.+. . .-.... .++.. ++|.+.++-..++.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 667899987642 221 1222111 0 011223 45553 34566666566788999
Q ss_pred EECCCCeeEEEeecccccCCCCcCc-------ccceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q 006126 577 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 633 (660)
Q Consensus 577 wd~~~~~~~~~~~~~~~~~~gh~~~-------~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~ 633 (660)
++ .+|+.............|..+. --....+++.|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4565444332100000010000 11356899999446666666667788887764
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.04 E-value=0.0022 Score=63.73 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=123.8
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC----CC-e--EEEEe--C--CCeEEEEeC--CCCceeeEe
Q 006126 387 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP----QD-L--FAFGF--D--DSSILVHCP--CTKKTKAKL 452 (660)
Q Consensus 387 ~~l~s~~-dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp----~~-~--l~s~~--~--d~~I~iwd~--~~~~~~~~~ 452 (660)
.+++... .+-+.+||+ +|+.++.+.. ..++.+..-| .| . ++.++ . +++|.+|++ .+++ +..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 3444444 788999999 8999888853 4566666555 23 1 33333 3 578999966 4443 4444
Q ss_pred ec------cC-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEEcCC---CeeeeceeeeeeeeccCCCCCCeEEEEEecC
Q 006126 453 KG------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 518 (660)
Q Consensus 453 ~~------~~-~~v~~l~~--sp~-~~-~l~s~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 518 (660)
.. .. ..+..+++ +|. ++ ++++...+|.+..|++.. +. ...+.+.++..+ +.+..+...+.
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg-----sq~EgcvvDd~ 190 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN-----SQTEGMAADDE 190 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS-----SCEEEEEEETT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC-----CCcceEEEcCC
Confidence 21 11 45666777 674 44 677888899999999842 21 223344433333 56888999998
Q ss_pred CcEEEEE-ecCcEEEEeCC-----CCceeeeecCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCeEEEEECC-CCeeEEE
Q 006126 519 QIHLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATY--SCDGK-CIYVSC-KSGHVKVFDTS-TLELRCQ 587 (660)
Q Consensus 519 ~~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~dg~-~l~sg~-~dg~I~iwd~~-~~~~~~~ 587 (660)
...|+++ .+..|..+|.+ +++.+..+....-...+..+++ .++++ +|++++ .++...+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888887 55567777755 3445555433222357888888 45666 666666 56799999997 7777777
Q ss_pred ee
Q 006126 588 IN 589 (660)
Q Consensus 588 ~~ 589 (660)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.00 E-value=0.045 Score=64.34 Aligned_cols=328 Identities=10% Similarity=-0.011 Sum_probs=179.1
Q ss_pred CCEEEEEeC-CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEeccCC--ceeee
Q 006126 274 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQSN--KQSLE 348 (660)
Q Consensus 274 g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~s--pdg~~l~s~s~dg~i~vw~~~~~--~~~~~ 348 (660)
+++++.|.. |++++|+++.+ -..+....++. .....++.+. ....+|..|-.||.+.-+.++.. .....
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 479999997 99999999974 23333333432 2233444433 23468889999998876665532 21100
Q ss_pred ----eeccceeEEEecCCC------------------CceeeecccCCCCCCe-EEEEEe----CCEEEEEeCCcEEEEE
Q 006126 349 ----EENVNMESQLYQPSS------------------KLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISIFS 401 (660)
Q Consensus 349 ----~~~~~~~~~~~~~~~------------------~~~~~~~~~~~h~~~v-~~v~~s----~~~l~s~~dg~I~iwd 401 (660)
..+.......+.... +.+.-.-. ....+ ....|+ .+-++..+++.++|..
T Consensus 645 r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~ 721 (1158)
T 3ei3_A 645 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGT 721 (1158)
T ss_dssp EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEE
T ss_pred eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEE
Confidence 111111111111111 11110000 01112 233454 3456655566788887
Q ss_pred CCCCe--EEEEEcCCCCCeEEEEEcCCC-eEEEEeC--------------------------------------------
Q 006126 402 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFD-------------------------------------------- 434 (660)
Q Consensus 402 ~~~~~--~~~~~~~~~~~v~~v~~sp~~-~l~s~~~-------------------------------------------- 434 (660)
+.+.. .++++. -...+..++++|+. .++.+..
T Consensus 722 i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 722 IDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp ECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred ecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 75432 223332 23566778888876 3332221
Q ss_pred -----CCeEEEEeCCCCceeeEeec-cCCCeEEEEE---eC-CCCEEEEEe----------CCCcEEEEEcCCCeeeece
Q 006126 435 -----DSSILVHCPCTKKTKAKLKG-HQNRITCLAY---SL-SLNVLVSSG----------ADAQLCVWDAVGWKKLCSK 494 (660)
Q Consensus 435 -----d~~I~iwd~~~~~~~~~~~~-~~~~v~~l~~---sp-~~~~l~s~s----------~dg~i~vwd~~~~~~~~~~ 494 (660)
-+.|++.|..+.+.+..+.- ....+.+++. .. ...++++|+ ..|.|.+|++..++. .
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL---~ 877 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL---Q 877 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE---E
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE---E
Confidence 12477788777776655543 2234455443 22 246888876 347899999874321 1
Q ss_pred eeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeE
Q 006126 495 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 574 (660)
Q Consensus 495 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I 574 (660)
.+. ..... +.+++++--. | +|+++..+.|++|++...+.++ .... +-..|..+.....+++++.|..-..|
T Consensus 878 lv~--~~~v~---g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv 948 (1158)
T 3ei3_A 878 TVA--EKEVK---GAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLMRSV 948 (1158)
T ss_dssp EEE--EEEES---SCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESSBCE
T ss_pred EEE--EEEcC---CcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhhheE
Confidence 122 11112 6788877553 4 6777778899999997655443 2111 11123333343457899998876666
Q ss_pred EE--EECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 575 KV--FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 575 ~i--wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
.+ |+...+++...-.. ..+.+++++.|-. + ..++.+..+|.+.+.....
T Consensus 949 ~~~~y~~~~~~L~~~a~D---------~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 949 LLLAYKPMEGNFEEIARD---------FNPNWMSAVEILD-D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEETTTTEEEEEEEC---------CSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEECT
T ss_pred EEEEEEcCCCeEEEEEee---------cccccEEEEEEEc-c-CcEEEEcCCCcEEEEecCC
Confidence 66 45555554433221 3345667888865 3 4778889999999987754
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.98 E-value=0.014 Score=65.71 Aligned_cols=202 Identities=7% Similarity=-0.060 Sum_probs=125.6
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC
Q 006126 376 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 445 (660)
Q Consensus 376 ~~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~~----~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~ 445 (660)
...+..++|. +..|+.+. .+.|+.+++... .....+.........+++.+.+ ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4557788888 56666665 578998988752 2233333344455688998877 555666778999999875
Q ss_pred CceeeEeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEE
Q 006126 446 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 523 (660)
Q Consensus 446 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 523 (660)
......+.........|+++|.+..|+.... . +.|...++..... ..+..... .....|++++.+..|+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------~~lv~~~l---~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSC---SCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------EEEEeCCC---CCceEEEEecCCCeEE
Confidence 4433333334456889999997666666553 2 6788888875221 11222222 4688999998777777
Q ss_pred EE--ecCcEEEEeCCCCceeeeecC-CCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEee
Q 006126 524 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 524 ~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~ 589 (660)
.+ ..+.|..+|+. |.....+.. ...-.....+++. +..|+.. ...+.|...|..+|+.+..+.
T Consensus 574 waD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 574 WVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 64 55789999985 443333322 1112345566663 4455544 445889888887776555543
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.94 E-value=0.022 Score=57.07 Aligned_cols=271 Identities=8% Similarity=-0.027 Sum_probs=140.1
Q ss_pred eEecCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 268 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 268 ~~~spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
+.|.+++..++ ++.+|.|. ....++ .......++.......+.++.|.+ +. ++.++.++.|.. ..+.++
T Consensus 41 v~~~~~~~~~~-~G~~g~i~-~s~DgG---~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~--- 109 (327)
T 2xbg_A 41 MSFIDRHHGWL-VGVNATLM-ETRDGG---QTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ--- 109 (327)
T ss_dssp EEESSSSCEEE-EETTTEEE-EESSTT---SSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS---
T ss_pred EEECCCCcEEE-EcCCCeEE-EeCCCC---CCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC---
Confidence 46666666666 44566542 222221 122222121111245789999986 44 444555664432 111121
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEECCCCeEEEE-EcCCCCCeEEEEEc
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLAT-FANPPPIATYFILL 424 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~s 424 (660)
.|..... ...+...+..+.+. +..++.+.+|.|.. ..+.|+.-.. .......+..+.+.
T Consensus 110 ----------tW~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 110 ----------SWSQIPL-------DPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS 171 (327)
T ss_dssp ----------SCEECCC-------CTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred ----------CceECcc-------ccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence 1221100 00123446777776 44444444665432 2222332222 23455678899999
Q ss_pred CCC-eEEEEeCCCeEE-EEeC--CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 425 PQD-LFAFGFDDSSIL-VHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 425 p~~-~l~s~~~d~~I~-iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
+++ .++.+. ++.+. -.|- .+.+.+. ......+..+.+.+++..++ ++.+|.+++.+...+..- ..+. ..
T Consensus 172 ~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW--~~~~-~~ 244 (327)
T 2xbg_A 172 PSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENW--GELL-SP 244 (327)
T ss_dssp TTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEE--CCCB-CT
T ss_pred CCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCee--Eecc-CC
Confidence 988 665554 44444 3442 2222221 23456788999999887654 556788777643322210 1111 00
Q ss_pred -eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 501 -TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 501 -~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
.... ..+.++.+.+++..++++.++.| .+....++.-..+... .....+.++.|.+++. +++++.+|.|.-++
T Consensus 245 ~~~~~---~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 245 LRRNS---VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TSSCC---SCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred cccCC---cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 0111 35888999998888888888877 3444445443333211 1235678888876554 55666788877665
Q ss_pred C
Q 006126 579 T 579 (660)
Q Consensus 579 ~ 579 (660)
-
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.0099 Score=66.84 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=141.4
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC----ceeeEeeccCCCe
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 459 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~----~~~~~~~~~~~~v 459 (660)
..+|+.+....|+..++.......... ....+..++|.+.+ ++++-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 345666666778888887655444333 34566789999855 5556666788999998753 2233333344567
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeC
Q 006126 460 TCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 535 (660)
Q Consensus 460 ~~l~~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~-d~~i~iwd~ 535 (660)
..|++.+.+..|+ +-...+.|.+.++.... ...+..... .....|++.|.+.+|+.+ . .+.|.+.++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS------EEEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------EEEEEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 7899998775555 44557889999997632 111222222 357899999986666653 2 367999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCC
Q 006126 536 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 614 (660)
Q Consensus 536 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d 614 (660)
. |.....+... .-.....|++++.+..|+.+.. .+.|..+++........+... ...-+..+++...
T Consensus 545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 5 5544444332 2467889999988777776644 578999998765444443311 1111233566543
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc
Q 006126 615 PNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 615 ~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
+.++++-...+.|...+..+|+
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCc
Confidence 3455555566788888766664
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.92 E-value=0.009 Score=59.57 Aligned_cols=199 Identities=8% Similarity=-0.072 Sum_probs=125.5
Q ss_pred eEEEEEe--CCEEEEEe--CCcEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeE
Q 006126 379 ISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK 451 (660)
Q Consensus 379 v~~v~~s--~~~l~s~~--dg~I~iwd~~~~~~~-~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~ 451 (660)
...++|. ++.|..+. .+.|..+++..+... ..+.........+++.+.+ ++++-...+.|.++++........
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 116 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 116 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE
Confidence 5577787 55666555 688999998765321 1222222345578888755 556666778999999875433333
Q ss_pred eeccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--ec
Q 006126 452 LKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE 527 (660)
Q Consensus 452 ~~~~~~~v~~l~~sp~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~d 527 (660)
+.........++++|.+..|+.+.. .+.|...++..... .. +....- ...+.++++|++..|+.+ ..
T Consensus 117 ~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~---~~~~~l---~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---FI---IINSEI---YWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---EE---EECSSC---SCEEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---EE---EEECCC---CCccEEEEeccCCEEEEEECCC
Confidence 3344456789999997666666553 57888888865211 11 111111 357899999977777764 56
Q ss_pred CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 528 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 528 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
+.|..+|+. +.....+... .......+++.. +..+.+-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~d-G~~~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLD-GTNRQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETT-SCSCEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCC-CCceEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 789999985 4333333321 245567788753 3444455556899999998887666554
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.90 E-value=0.0023 Score=66.96 Aligned_cols=241 Identities=10% Similarity=0.020 Sum_probs=130.5
Q ss_pred CCeEEEEEecC--CCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CC
Q 006126 312 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 387 (660)
Q Consensus 312 ~~V~~~~~spd--g~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~ 387 (660)
.....++|+|+ +..|..+...+.|+.++..++. ..... ........++++ ++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~---------------------v~~~~---~~~~~P~giavd~dG~ 194 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY---------------------VDIKT---TNIGQCADVNFTLNGD 194 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE---------------------EEEEC---CCCSCEEEEEECTTCC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE---------------------EEEee---cCCCCccEEEECCCCC
Confidence 45678899984 3445555444666666554332 22211 233457889998 66
Q ss_pred EEEEEe-CC-----cEEEEECCCCeE-EEEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEe-ec-cC
Q 006126 388 HLFSAS-GG-----KISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-KG-HQ 456 (660)
Q Consensus 388 ~l~s~~-dg-----~I~iwd~~~~~~-~~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~-~~-~~ 456 (660)
|+.+. .+ .+...+...+.. ...+. .......++++| +| ++++-..++.|+.+|..++.....+ .. ..
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444 22 133333222111 01111 123345678999 56 5555556788999999877663333 21 12
Q ss_pred CCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC--Ceeeeceeeeee--eeccCC------CCCCeEEEEE---------e
Q 006126 457 NRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSKFLHSF--QTGLVP------ETTIVNHIQF---------H 516 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~-s~dg~i~vwd~~~--~~~~~~~~~~~~--~~~~~~------~~~~v~~~~~---------s 516 (660)
..-..++|+|+|++|+.+ ...+.|+.++... +.......+... ..+... .-.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 233479999999955544 4568899988753 211000000000 000000 0024667999 6
Q ss_pred cCCcEEEE-EecCcEEEEeCCCCceeeeecCCCC----------------CCCeEEEEEc-cCCCEEEEEecCCeEEEEE
Q 006126 517 PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 517 p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd 578 (660)
++|.+.++ ...+.|+.++. ++.. .++.+... -.....++++ ++|.++++=..++.|+.++
T Consensus 353 ~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 353 DEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp CCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 77766666 46678999985 5643 33332110 1236788998 5666665555667888777
Q ss_pred CC
Q 006126 579 TS 580 (660)
Q Consensus 579 ~~ 580 (660)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.004 Score=65.14 Aligned_cols=241 Identities=7% Similarity=-0.030 Sum_probs=130.9
Q ss_pred CCeEEEEEec-CCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCE
Q 006126 312 GRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 388 (660)
Q Consensus 312 ~~V~~~~~sp-dg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~ 388 (660)
.....++++| ++..|..+...+.|..++...... .... ........++|+ +++
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v---------------------~~~~---~~~~~P~~ia~d~~G~~ 192 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV---------------------STVY---SGLSKVRTICWTHEADS 192 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE---------------------EEEE---CCCSCEEEEEECTTSSE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE---------------------EEEe---cCCCCcceEEEeCCCCE
Confidence 3567889998 455566665555666555544322 1111 133457788998 775
Q ss_pred EEEEe--CC----cEEEEECCCCeEE--EEEcCCCCCeEEEEEcC-CC-eEEEEeCCCeEEEEeCCCCceeeEeec-cCC
Q 006126 389 LFSAS--GG----KISIFSLETFQTL--ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQN 457 (660)
Q Consensus 389 l~s~~--dg----~I~iwd~~~~~~~--~~~~~~~~~v~~v~~sp-~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~-~~~ 457 (660)
|+.+. ++ .+..++. .+... ..+.. ......++++| +| ++++-..++.|..++..++........ ...
T Consensus 193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 66655 22 2333443 23221 22221 22345778999 56 566666778999999887654222221 224
Q ss_pred CeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeeceeeeee--eeccCC------CCCCeE-EEEEe--------c
Q 006126 458 RITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKFLHSF--QTGLVP------ETTIVN-HIQFH--------P 517 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~~~~~~~--~~~~~~------~~~~v~-~~~~s--------p 517 (660)
....++|+|+|++|+. -...+.|..++... +.......+... ..+... .-.... .++.. +
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~ 350 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD 350 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence 5678999999995544 45678899988763 211000000000 000000 001233 45553 3
Q ss_pred CCcEEEE-EecCcEEEEeCCCCceeeeecCCC----------------CCCCeEEEEEccC-CCEEEEEecCCeEEEEEC
Q 006126 518 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDT 579 (660)
Q Consensus 518 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~ 579 (660)
+|.+.++ ...+.|+.++. ++... ++.+.. .-.....++++|+ +.++++-..++.|+.+++
T Consensus 351 ~g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 351 EYDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CEEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 4555555 36678999984 56433 322210 0125788999995 555555555678888775
Q ss_pred C
Q 006126 580 S 580 (660)
Q Consensus 580 ~ 580 (660)
+
T Consensus 429 e 429 (430)
T 3tc9_A 429 E 429 (430)
T ss_dssp C
T ss_pred C
Confidence 4
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.85 E-value=0.0047 Score=61.42 Aligned_cols=186 Identities=6% Similarity=0.021 Sum_probs=115.9
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC----CCE--E-EEEe-C--CCcEEEEEcC--CCeeeecee
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNV--L-VSSG-A--DAQLCVWDAV--GWKKLCSKF 495 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~--l-~s~s-~--dg~i~vwd~~--~~~~~~~~~ 495 (660)
.++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+. + ++.. . +++|.+|++. ++.. ..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l---~~ 115 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL---QS 115 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE---EE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce---ee
Confidence 5666667789999999 7888888864 56777776652 322 2 3333 3 5789999774 3221 11
Q ss_pred eeee--eeccCCCCCCeEEEEE--ecC-Cc-EEEE-EecCcEEEEeCC-------CCceeeeecCCCCCCCeEEEEEccC
Q 006126 496 LHSF--QTGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATYSCD 561 (660)
Q Consensus 496 ~~~~--~~~~~~~~~~v~~~~~--sp~-~~-~l~~-~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~s~d 561 (660)
+... ..+... ..+..+++ +|. ++ ++++ ..+|.+..|++. +.+.++++.. ...+..+...+.
T Consensus 116 i~~~~~pv~t~~--~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~ 190 (355)
T 3amr_A 116 MTDPDHPIATAI--NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE 190 (355)
T ss_dssp CSCTTSCEECCC--SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred ccccccCcCCCC--CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence 1000 100000 24566777 674 54 4555 478999998882 3456777765 567889999999
Q ss_pred CCEEEEEecCCeEEEEECC-----CCeeEEEeecccccCCCCcCcccceEEEEE--ecCCCC-EEEEEe-CCCeEEEEeC
Q 006126 562 GKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAA--HPLEPN-RIALGL-TNGRVHVIEP 632 (660)
Q Consensus 562 g~~l~sg~~dg~I~iwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~--sp~d~~-~l~s~s-~Dg~v~iw~~ 632 (660)
...|+.+-++.-|..++.+ +++.+..+.. ++-...+. .++. .+ ++. +|++++ .+.+..+||.
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE--GLai~~~~-~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE--GLTIYYAA-DGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE--EEEEEECG-GGCEEEEEEEGGGTEEEEEES
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc--eEEEEecC-CCCEEEEEEcCCCCEEEEEEC
Confidence 9999999999777777755 3444444321 22223344 5555 55 455 555555 6789999999
Q ss_pred C
Q 006126 633 L 633 (660)
Q Consensus 633 ~ 633 (660)
.
T Consensus 262 ~ 262 (355)
T 3amr_A 262 Q 262 (355)
T ss_dssp S
T ss_pred C
Confidence 6
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.77 E-value=0.037 Score=60.63 Aligned_cols=225 Identities=11% Similarity=-0.010 Sum_probs=142.5
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEE
Q 006126 387 SHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 463 (660)
Q Consensus 387 ~~l~s~~dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~ 463 (660)
.+|+.+..+.|+..++.+......+. ..-.....++|++.+ .+++-..++.|..+++........+.........++
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 35566667889999998755433332 223457799999976 555666788999999875544333333334577899
Q ss_pred EeCCCCEEE-EEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCc
Q 006126 464 YSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLN 539 (660)
Q Consensus 464 ~sp~~~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~ 539 (660)
+.+.+..|+ +-...+.|.+.++..... ..+..... .....+++.|....|+.+ ..+.|...++. |.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~------~~l~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~ 156 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHR------QVLVWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GS 156 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTC------EEEECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcE------EEEEeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CC
Confidence 987655554 444567899999876321 11111111 357899999965555553 25688888884 44
Q ss_pred eeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEE
Q 006126 540 HTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 618 (660)
Q Consensus 540 ~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l 618 (660)
....+.. .-.....++++++++.|+.+.. .+.|..+|+..... ..+... . .+ ..++++.. +.++
T Consensus 157 ~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l--~~---P~glav~~--~~ly 221 (628)
T 4a0p_A 157 ERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----L--PH---PFGLTQYQ--DYIY 221 (628)
T ss_dssp SCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----C--SC---EEEEEEET--TEEE
T ss_pred ceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----C--CC---ceEEEEEC--CEEE
Confidence 3344332 2567889999998877776654 57899999976544 333210 0 11 33666654 3555
Q ss_pred EEEeCCCeEEEEeCCCCc
Q 006126 619 ALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 619 ~s~s~Dg~v~iw~~~~~~ 636 (660)
++-...+.|...|..+++
T Consensus 222 ~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EecCCCCEEEEEECCCCC
Confidence 565567888888877665
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.72 E-value=0.00021 Score=79.82 Aligned_cols=202 Identities=8% Similarity=-0.046 Sum_probs=118.6
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCC
Q 006126 377 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 446 (660)
Q Consensus 377 ~~v~~v~~s--~~~l~s~~--dg~I~iwd~~~----~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~ 446 (660)
..+..++|. ++.|+.+. .+.|..+++.. ......+.........+++.+.+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345677887 56666665 57899999875 22222221122234467887554 5555556788999998754
Q ss_pred ceeeEeeccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 447 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 447 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
.....+.........++++|.+.+|+.+.. . +.|..+++..... .. +..... .....|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~---~~---l~~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS---LVTENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC---CE---ESCSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe---eE---EEeCCC---CCccEEEEeccCCEEEE
Confidence 433333323345678899996665555443 2 6788887764211 11 111111 35668999998776666
Q ss_pred E--ecCcEEEEeCCCCceeeeecCC-CCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEee
Q 006126 525 I--HEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 589 (660)
Q Consensus 525 ~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~ 589 (660)
+ ..+.|.++|+.. .....+... ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 567899999853 333333221 11233445666543 344444556899999999888777664
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.032 Score=58.61 Aligned_cols=254 Identities=9% Similarity=-0.078 Sum_probs=145.9
Q ss_pred CeEEEEEe---CCEEEEEe--CCcEEEEECCCCeEEEEEcCC---CCCeEEEEE-------cCCC-eEEEEeCCC-----
Q 006126 378 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 436 (660)
Q Consensus 378 ~v~~v~~s---~~~l~s~~--dg~I~iwd~~~~~~~~~~~~~---~~~v~~v~~-------sp~~-~l~s~~~d~----- 436 (660)
....|+|+ +..|+.+. .+.|++.|+.++......... ......++| ++++ .++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45678887 24555555 367999999887776555432 235789999 9999 666665543
Q ss_pred --eEEEEeCCC-Ccee-----eEeeccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcC-------CCeee-e--ce---
Q 006126 437 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAV-------GWKKL-C--SK--- 494 (660)
Q Consensus 437 --~I~iwd~~~-~~~~-----~~~~~~~~~v~~l~~sp~-~~~l~s~s~dg~i~vwd~~-------~~~~~-~--~~--- 494 (660)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..- . ..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 222221 23456788994 5555566677889999997 54320 0 00
Q ss_pred eeeeee-eccCCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeC--CCCce--eeeecCC----C---------CCCCeE
Q 006126 495 FLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEA--PTLNH--TSQLVPD----K---------MDLPIT 554 (660)
Q Consensus 495 ~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~--~~~~~--~~~~~~~----~---------~~~~v~ 554 (660)
....+. .+.. .....++|+|+|++|+++ ....|+.+|. .++.. ..++.+. . .-....
T Consensus 299 ~~~~l~~~~~~---~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTIADP---SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEECSSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEecCCC---CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 001111 1111 456799999999976664 5678888664 33321 0122111 0 012234
Q ss_pred -EEEEc-------cCCCEEEEEecCCeEEEEECCCCeeEEEeecccc-------cCCCCcCc-------ccceEEEEEec
Q 006126 555 -YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY-------AQPGTISL-------ELYPLVIAAHP 612 (660)
Q Consensus 555 -~~~~s-------~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~-------~~~gh~~~-------~v~~~~v~~sp 612 (660)
.++.. ++|.+.++=..++.|+.++ .+|.. ..+..... ...|..+. --....+++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 45554 4566666666788999999 45643 33332100 00011111 12356899999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce
Q 006126 613 LEPNRIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
+++.+.++-.....||.+++....+
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcc
Confidence 3377777777788999999876544
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.028 Score=59.06 Aligned_cols=250 Identities=8% Similarity=-0.075 Sum_probs=134.1
Q ss_pred CeEEEEEec-CCCEEEEEEC-CCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccC-CCCCCeEEEEE-----
Q 006126 313 RVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL----- 384 (660)
Q Consensus 313 ~V~~~~~sp-dg~~l~s~s~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~----- 384 (660)
....|+|+| ++..|+.+.. .+.|++.|.+.+.. ....... ........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v---------------------~~l~~~~~~~~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML---------------------SSPLNINTIPTNRIRSIAFNKKIE 198 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE---------------------EEEECCTTSSCSBEEEEEECCCBT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE---------------------EEEEccCccccCCCcEEEEeeccc
Confidence 577899998 3444444443 35555555444332 2111000 12235788999
Q ss_pred --e--CCEEEEEe-CC-c------EEEEECCC-CeEE-----EEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCC
Q 006126 385 --R--GSHLFSAS-GG-K------ISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 444 (660)
Q Consensus 385 --s--~~~l~s~~-dg-~------I~iwd~~~-~~~~-----~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~ 444 (660)
+ +++|+.+. .+ . |.+++... +... +.+... .....++++|++ ++++-..++.|..+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 7 77677776 32 2 66665443 2221 122211 123467889955 56666678889999987
Q ss_pred -------CCce-----------eeE-ee-ccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCC--Ceeeeceeeeee--
Q 006126 445 -------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKFLHSF-- 499 (660)
Q Consensus 445 -------~~~~-----------~~~-~~-~~~~~v~~l~~sp~~~~l~s-~s~dg~i~vwd~~~--~~~~~~~~~~~~-- 499 (660)
++.. ... +. +.......++|+|+|+.|.. -+....|+.+|... +.......+.-.
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 112 21 12345678999999996444 45667898866543 211000000000
Q ss_pred eeccCC------CCCCeE-EEEEe-------cCCcEEEE-EecCcEEEEeCCCCceeeeecCCC----------------
Q 006126 500 QTGLVP------ETTIVN-HIQFH-------PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------- 548 (660)
Q Consensus 500 ~~~~~~------~~~~v~-~~~~s-------p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------------- 548 (660)
..+... .-.... .++.. ++|.++++ ..+..|+.++. +|. +.++.+..
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCC
Confidence 001000 001234 34554 45666665 47789999994 563 44443320
Q ss_pred ------CCCCeEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEE
Q 006126 549 ------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRC 586 (660)
Q Consensus 549 ------~~~~v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~ 586 (660)
.-.....++++++ |.+.++=..++.|+.+++.......
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 0134667888886 6655555566788888887654443
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.63 E-value=0.0022 Score=63.29 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=106.1
Q ss_pred EEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEeecc-------CCCeEEEEE---eCCCCEEEEEe-----------
Q 006126 419 TYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH-------QNRITCLAY---SLSLNVLVSSG----------- 475 (660)
Q Consensus 419 ~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~---sp~~~~l~s~s----------- 475 (660)
-++.|++.. .+..++ ..++|..||...+......... ...+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 478898866 666665 7899999999766443332211 114579999 68877777543
Q ss_pred --CCCcEEEEEcC---CCeeeeceeeeeeeec------cCCCCCCeEEEEEecCCcEEEE-Eec-CcEEEEeCCCCceee
Q 006126 476 --ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNHTS 542 (660)
Q Consensus 476 --~dg~i~vwd~~---~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~-~~d-~~i~iwd~~~~~~~~ 542 (660)
.+..+..||+. +++......+.....+ ... .....++..++|+..++ +.. +.|..++.. ++.+.
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~ 172 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVS 172 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEe
Confidence 26779999999 7654433332211111 010 24789999999998887 566 778888774 44333
Q ss_pred eecC----CCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 543 QLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 543 ~~~~----~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
.+.. .......+.++++|+|+.|++...+|.+..+|+.+
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3211 11133467999999999988887799999999884
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.62 E-value=0.059 Score=52.60 Aligned_cols=228 Identities=13% Similarity=0.144 Sum_probs=141.5
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-CceeeEeeccC----CCeE
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 460 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~----~~v~ 460 (660)
.+.+|.-...++.++|+++...++.+.-.. .|.-=.|-.+..|+..+ +..|+.|++.. ..+.+.+..|. ..|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 445555557899999999999988887544 55555666555333322 55899999874 35666666543 4566
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe--cCCcEEEE-Ee----
Q 006126 461 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH---- 526 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~-~~---- 526 (660)
.-..+++.++++..+- .|.+.+|..+.+ .....+||. +....+.+. +....|.+ +.
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSE---EEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence 7777889998765442 367888888762 222556664 222122111 11223333 32
Q ss_pred cCcEEEEeCCCC---ce------eee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126 527 EGQIDVYEAPTL---NH------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 596 (660)
Q Consensus 527 d~~i~iwd~~~~---~~------~~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 596 (660)
.+.+++.++... .. +.. +.+........++..|+.-..++.-+.-|.|++||++++.++..-...
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS----- 300 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 300 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC-----
Confidence 268999998432 11 111 222222455668888988889999999999999999999988765432
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
...+.+ .+-+. +..=++.....|.|.--.++...
T Consensus 301 ---~d~iF~--ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 301 ---GETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ---SSCEEE--EEEEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred ---CCceEE--ecccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 444553 33333 23345555688887777666543
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00028 Score=78.75 Aligned_cols=228 Identities=11% Similarity=-0.019 Sum_probs=129.4
Q ss_pred EEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eE-EEEeCCCeEEEEeCCC----CceeeEeeccCCCeEE
Q 006126 388 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCT----KKTKAKLKGHQNRITC 461 (660)
Q Consensus 388 ~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l-~s~~~d~~I~iwd~~~----~~~~~~~~~~~~~v~~ 461 (660)
+|+.+..+.|+..++.+......+.. ...+..++|.+.+ .| ++-...+.|+.+++.. ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 34444456788888877655443332 2345678999866 44 4445567899999875 2222222212223556
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE--e-cCcEEEEeCCC
Q 006126 462 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT 537 (660)
Q Consensus 462 l~~sp~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~-d~~i~iwd~~~ 537 (660)
+++.+.+ +++++-...+.|.++++..... ..+..... .....++++|.+.+|+.+ . .+.|.++++.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~d- 527 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 527 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCC-
Confidence 7887544 4444445578899999876321 11111111 245678999976666553 2 3688888874
Q ss_pred CceeeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 538 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 538 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg-~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
+.....+... .-.....++|+|++..|+.+ +..+.|..+++........+... + ...+...+++.. +.
T Consensus 528 G~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~---~~~~P~glavd~--~~ 596 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----K---RLAHPFSLAVFE--DK 596 (699)
T ss_dssp SCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----S---SCSSCCCCEEET--TE
T ss_pred CCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----C---cCCCceEeEEEC--CE
Confidence 3333333221 13456689999986666554 45678999998754433332211 0 001122455544 34
Q ss_pred EEEEEeCCCeEEEEeCCCCce
Q 006126 617 RIALGLTNGRVHVIEPLESEV 637 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~~~ 637 (660)
++++....+.|..++..+++.
T Consensus 597 lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEE
T ss_pred EEEEeCCCCeEEEEEccCCCc
Confidence 555666678899999877654
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.57 E-value=0.15 Score=55.81 Aligned_cols=298 Identities=11% Similarity=-0.039 Sum_probs=162.4
Q ss_pred eeeEecCCCCEEEEEe-CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEeccCC
Q 006126 266 RESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSN 343 (660)
Q Consensus 266 ~~~~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~~~~~ 343 (660)
..+.+.++++.|+.+. ..+.|...|+.+ .....+ +.+ .......+++..+ .|+.+. .++.|...|..++
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG----~~~~~~-~~~--~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAV-VKG--SLPHPFALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSC----CEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCC----CccEEE-EeC--CCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 3457788766665554 457788888764 111111 111 1222345666555 444443 4678888887665
Q ss_pred ceeee---eeccceeEEEecCCCC------------ceeeecccCCCCCCeEEEEEe---------------CCEEEEEe
Q 006126 344 KQSLE---EENVNMESQLYQPSSK------------LVMTNDIAADPKDSISCFALR---------------GSHLFSAS 393 (660)
Q Consensus 344 ~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~~~~h~~~v~~v~~s---------------~~~l~s~~ 393 (660)
+.... .......+.++.+... .+-...+.........|.+.. ..+|+.+.
T Consensus 245 ~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~ 324 (619)
T 3s94_A 245 EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR 324 (619)
T ss_dssp CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE
T ss_pred cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc
Confidence 43222 1122334455543110 010000000000112232221 12556666
Q ss_pred CCcEEEEECCCCeEEE-EEc-CCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCC
Q 006126 394 GGKISIFSLETFQTLA-TFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 469 (660)
Q Consensus 394 dg~I~iwd~~~~~~~~-~~~-~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 469 (660)
.+.|+..++....... .+. ..-..+..++|.+.+ .+++-...+.|+.+++........+...-.....+++.+.+.
T Consensus 325 ~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 6778888876553221 111 122456789999855 555555678999999875443333333335677899987555
Q ss_pred -EEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE---ecCcEEEEeCCCCceeeeec
Q 006126 470 -VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 470 -~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~d~~i~iwd~~~~~~~~~~~ 545 (660)
..++-+..+.|.+.++.... ...+....- .....+++.|....|+.+ ....|...++. |.....+.
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~------~~~l~~~~l---~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~ 474 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTM------RKILISEDL---EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLV 474 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCS------CEEEECTTC---CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEE
T ss_pred cEEEEeCCCCcEEEEeCCCCe------EEEEEECCC---CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEE
Confidence 44554567889999987632 111222222 468899999974444443 23678777774 44433443
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCCCe
Q 006126 546 PDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE 583 (660)
Q Consensus 546 ~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~~~ 583 (660)
.. .-.....+++++++..|+.+.. .+.|..+++....
T Consensus 475 ~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 475 NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 21 2566789999998777776654 4789999986544
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.53 E-value=0.1 Score=53.03 Aligned_cols=228 Identities=13% Similarity=0.157 Sum_probs=141.6
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCC-CceeeEeeccC----CCeE
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 460 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~-~~~~~~~~~~~----~~v~ 460 (660)
.+.+|.-...++.++|+++...++.+.-... |.-=.|-.+..|+.. .+..|+.|++.. ..+.+.+..|. ..|.
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QII 154 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchhcccceEE
Confidence 3445555578999999999999888876554 434455444433322 256899999974 35666666553 4566
Q ss_pred EEEEeCCCCEEEEEeC-------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEec--CCcEEEE-Ee----
Q 006126 461 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IH---- 526 (660)
Q Consensus 461 ~l~~sp~~~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~-~~---- 526 (660)
.-..+++.++++..+- .|.+.+|..+.+ +....+||. +....+.+.. ....+.+ +.
T Consensus 155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSE---EEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred EEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence 7777889998775432 467888888762 222566775 2222222221 1122333 42
Q ss_pred cCcEEEEeCCCC---ce------eee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCC
Q 006126 527 EGQIDVYEAPTL---NH------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 596 (660)
Q Consensus 527 d~~i~iwd~~~~---~~------~~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 596 (660)
.+.++|.++... .. +.. +.+........++..|+.-..++.-+.-|.|++||+.++.++..-...
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs----- 299 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 299 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc-----
Confidence 268999998532 11 111 122222455668899999899999999999999999999988765432
Q ss_pred CCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 597 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 597 gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
...+. .-+.+. +..=++.....|.|.--.++...
T Consensus 300 ---~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 300 ---GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp ---SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred ---CCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 44455 333344 33445555688887777766543
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.49 E-value=0.18 Score=55.09 Aligned_cols=334 Identities=11% Similarity=-0.006 Sum_probs=174.7
Q ss_pred CCCceeeEecCCCCEEEEEe-CCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEe
Q 006126 262 NNQSRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWK 339 (660)
Q Consensus 262 ~~~~~~~~~spdg~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s-~dg~i~vw~ 339 (660)
-.....++|++.+..|+.+. ..+.|..++..+. .....+ +.. -......+++.+.+..|+.+. ..+.|.+.+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v-~~~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---ESVQNV-VVS--GLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC---CceEEE-EeC--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 33455668898777666554 4577888888641 111111 211 135789999999766666554 467888777
Q ss_pred ccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEECCCCeEEEEEcCC
Q 006126 340 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP 414 (660)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~l~s~~---dg~I~iwd~~~~~~~~~~~~~ 414 (660)
.+...... +.. ..-.....+++. +.+|..+. .+.|...++............
T Consensus 113 ~dG~~~~~----------l~~-------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 113 LDGSLRKV----------LFW-------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TTSCSCEE----------EEC-------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CCCCCEEE----------EEe-------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 65443210 000 122335567776 45555555 256776776533332223333
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 415 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 415 ~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
-.....+++++++ +.++-...+.|..+|+..........+......++++..+ ..+++-...+.|...|..+++...
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 4456889999876 4445556678999998754332222222223346667554 344444456789999987764321
Q ss_pred ce------e--eeee-----eeccCCC---CCCeEEEE-----------Eec-------C--------CcEEEEEecCcE
Q 006126 493 SK------F--LHSF-----QTGLVPE---TTIVNHIQ-----------FHP-------D--------QIHLLSIHEGQI 530 (660)
Q Consensus 493 ~~------~--~~~~-----~~~~~~~---~~~v~~~~-----------~sp-------~--------~~~l~~~~d~~i 530 (660)
.. + +... +.+..+- .+....++ ..| | ..+|+.+..+.|
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i 328 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDL 328 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCE
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccce
Confidence 10 0 0000 0000000 00011111 112 2 124555666778
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE
Q 006126 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA 609 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 609 (660)
+..++...........-..-..+..++|++.+..|+.+. ..+.|+.+++........+.. + -. .+..++
T Consensus 329 ~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~--~p~GlA 398 (619)
T 3s94_A 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IA--HPDGIA 398 (619)
T ss_dssp EEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CS--CCCEEE
T ss_pred EEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CC--CcCceE
Confidence 888886543221111111245678899998666666554 468899999876543333321 1 11 123677
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCC
Q 006126 610 AHPLEPNRIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~ 635 (660)
+.+..+++.++-+..+.|.+.++...
T Consensus 399 vD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EecccCcEEEEeCCCCcEEEEeCCCC
Confidence 77634555566556678888877644
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.41 E-value=0.0073 Score=59.53 Aligned_cols=171 Identities=8% Similarity=0.038 Sum_probs=109.9
Q ss_pred cCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCeeeeceeeeeee-eccCCCCCCeEEEEE---ecCCcEEEEEe---
Q 006126 455 HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQF---HPDQIHLLSIH--- 526 (660)
Q Consensus 455 ~~~~v~~l~~sp~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~---sp~~~~l~~~~--- 526 (660)
.....-++.|++....+..++ ..++|..||...+..... .+..+. .+... ..+..+.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~--~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGE--QQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCS--EEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCc--ceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455788988655666555 789999999975432111 111000 01110 24578999 68888887643
Q ss_pred -----------cCcEEEEeCC---CCceeeeecCCC-----------CCCCeEEEEEccCCCEEEEEecC-CeEEEEECC
Q 006126 527 -----------EGQIDVYEAP---TLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCKS-GHVKVFDTS 580 (660)
Q Consensus 527 -----------d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~s~dg~~l~sg~~d-g~I~iwd~~ 580 (660)
+..|..||+. +++.+....... .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 4679999998 777654432110 12347899999999999999988 888888876
Q ss_pred CCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 581 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
... ...+.... +.+. .....+.++++| ++..|++...+|.+.-+|+..
T Consensus 168 G~~-~~~~~~~~--~~~~--~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKT-VSTFAWES--GNGG--QRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCC-EEEEEECC--CCSS--SCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred CCE-EeeeeecC--CCcc--cccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 543 22222110 1111 112244899999 899888887799999999884
No 304
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.34 E-value=0.43 Score=56.02 Aligned_cols=308 Identities=10% Similarity=-0.002 Sum_probs=162.2
Q ss_pred CCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecC------CCEEEEEEC-CCcEEEEeccCCcee
Q 006126 274 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQS 346 (660)
Q Consensus 274 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spd------g~~l~s~s~-dg~i~vw~~~~~~~~ 346 (660)
+.+++.++ ++.+.++.+..+. -.......+ ...|.|+++.|. +++++.|.. |++++|+++...+..
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~-L~~~~~~~l-----~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQE-LRQISHTEM-----EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTE-EEEEEEEEC-----SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEE-CCEEEEEEeeCCc-eeeecccCC-----CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 44566664 5677777765311 112222333 568999999864 368999996 999999998754321
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEC--CCCeEEEE--EcCCCCC
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT--FANPPPI 417 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----~~~l~s~~-dg~I~iwd~--~~~~~~~~--~~~~~~~ 417 (660)
.. ... +......++.+. ..+|..|- ||.+..+.+ .+|..... ..-...+
T Consensus 596 ~~----------~~L------------~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~p 653 (1158)
T 3ei3_A 596 HK----------EML------------GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP 653 (1158)
T ss_dssp EE----------EEC------------CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSC
T ss_pred EE----------EEC------------CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCc
Confidence 10 000 111223444443 33566666 887755544 45544322 2222344
Q ss_pred eEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeeccCCCe-EEEEEeCC--CCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 418 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-TCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 418 v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~--~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
+.-..+...| .+++++ +....+|.-+ ++.... .-.-..+ ....|+.. ..-++..+ ++.++|.-+....
T Consensus 654 v~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~--- 726 (1158)
T 3ei3_A 654 TVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ--- 726 (1158)
T ss_dssp CEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS---
T ss_pred eEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC---
Confidence 5444444444 444444 3433344333 332211 1111123 23345432 23344433 5668888876532
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-E-e--------------------------------------------
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H-------------------------------------------- 526 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~-~-------------------------------------------- 526 (660)
...+++++-+ ..+..++++|+.+.+++ . .
T Consensus 727 ~~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 801 (1158)
T 3ei3_A 727 KLHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG 801 (1158)
T ss_dssp SEEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred CeeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence 2233333333 35778888887766544 2 1
Q ss_pred ----cCcEEEEeCCCCceeeeecCCCCCCCeEEEEE---ccC-CCEEEEEe----------cCCeEEEEECCCCeeEEEe
Q 006126 527 ----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATY---SCD-GKCIYVSC----------KSGHVKVFDTSTLELRCQI 588 (660)
Q Consensus 527 ----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~d-g~~l~sg~----------~dg~I~iwd~~~~~~~~~~ 588 (660)
-+.|++.|..+.+.+..+.... ...+.+++. ..+ ..++++|+ ..|.|++|++..+++....
T Consensus 802 ~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 802 EEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp CEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred CceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 1247778877777776665532 444555543 322 47888886 2488999999765443332
Q ss_pred ecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 589 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 589 ~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
... . .+.++ +++-- +| +|++|- .++|++|++...+
T Consensus 881 ~~~---v----~g~v~--al~~~--~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 881 EKE---V----KGAVY--SMVEF--NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEE---E----SSCEE--EEEEE--TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EEE---c----CCcCE--EEeee--CC-EEEEEc-CCEEEEEECCCCc
Confidence 211 0 23344 44422 45 444443 4789999997654
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.32 E-value=0.05 Score=53.65 Aligned_cols=227 Identities=10% Similarity=0.006 Sum_probs=115.9
Q ss_pred EEEEEe-C--CcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCC----CeEEEEeCCCCceeeE--eecc
Q 006126 388 HLFSAS-G--GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK--LKGH 455 (660)
Q Consensus 388 ~l~s~~-d--g~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d----~~I~iwd~~~~~~~~~--~~~~ 455 (660)
.++.|+ + ..+.+||..+.+-...- .........+. -++ .++.|+.+ ..+.+||+.+++-... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 344555 2 57999999887644321 11111222222 356 67777755 5789999987753322 1111
Q ss_pred CCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee--
Q 006126 456 QNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-- 526 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-- 526 (660)
......+.+ +++.++.|+.+ ..+.+||..+.+-.. +....... .-.+++.. +++.++. |.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQR-----CSHGMVEA-NGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSCC-----BSCEEEEE-TTEEEEECCEES
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCCc-----ceeEEEEE-CCEEEEECCCCC
Confidence 111122222 67777777765 468899998854211 11111111 11122222 5565555 32
Q ss_pred -------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeeccccc
Q 006126 527 -------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYA 594 (660)
Q Consensus 527 -------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~ 594 (660)
-..+.+||+.+.+-...-... ....-.+++. -++++++.|+.+ ..+.+||+.+.+-... ...
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~--- 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPM--- 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCC---
T ss_pred CCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCC---
Confidence 345899999876543221111 1111112222 266777777654 4689999988753322 111
Q ss_pred CCCCcCcccceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCC
Q 006126 595 QPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 595 ~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~ 642 (660)
+.. . ....++.+ ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 235 p~~--r--~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~ 278 (306)
T 3ii7_A 235 PWK--G--VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVAN 278 (306)
T ss_dssp SCC--B--SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEEE
T ss_pred CCC--c--cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEeC
Confidence 111 1 11112222 56788888854 46788888765 46543
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.21 E-value=0.17 Score=50.72 Aligned_cols=197 Identities=13% Similarity=0.052 Sum_probs=111.6
Q ss_pred CeEEEEEcCCC-eEEEE------------eCCCeEEEEeCCCC--cee-eEeec-----cCCCeEEEEEeC--CCC-EEE
Q 006126 417 IATYFILLPQD-LFAFG------------FDDSSILVHCPCTK--KTK-AKLKG-----HQNRITCLAYSL--SLN-VLV 472 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~s~------------~~d~~I~iwd~~~~--~~~-~~~~~-----~~~~v~~l~~sp--~~~-~l~ 472 (660)
..-.+...|+| .++++ ..+|.|.++|+.+. +.. -.+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44567788888 44444 26899999998742 221 12222 224667787766 454 344
Q ss_pred EE-eC--CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe------------------cCcEE
Q 006126 473 SS-GA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH------------------EGQID 531 (660)
Q Consensus 473 s~-s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------------d~~i~ 531 (660)
++ .. +.+|.+|++..+... ...+. ...+..- ...+.+.+.++|.+.++.. .+.|+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~-~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLK-TIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEE-EECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEe-ccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 44 33 467888877653221 12222 2222221 5788999999999877642 13455
Q ss_pred EEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec-CCeEEEEECCC-CeeEE--EeecccccCCCCcCcccceEE
Q 006126 532 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTST-LELRC--QINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 532 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~-dg~I~iwd~~~-~~~~~--~~~~~~~~~~gh~~~~v~~~~ 607 (660)
.+|. ++. ..+.. .-...+.++||||++.|+.+.. .+.|+.|++.. +++.. .+.. .| ..-.
T Consensus 207 r~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----~g------~PDG 270 (355)
T 3sre_A 207 YYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----DT------LVDN 270 (355)
T ss_dssp EECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----SS------EEEE
T ss_pred EEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----CC------CCce
Confidence 5555 332 22211 1455788999999998887654 68999999863 43322 2211 11 1236
Q ss_pred EEEecCCCCEEEEEeCC-CeEEEEeCC
Q 006126 608 IAAHPLEPNRIALGLTN-GRVHVIEPL 633 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~D-g~v~iw~~~ 633 (660)
++..+.+|++.+++..+ +.|..|++.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECCC
Confidence 77777228887776644 344444443
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.19 E-value=0.2 Score=49.00 Aligned_cols=262 Identities=10% Similarity=0.029 Sum_probs=155.3
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 363 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (660)
.+|.|-|+..+ ....+..+ .--+.-.+|..+.+|.-. ..++.|+|+++...
T Consensus 49 ~~VvIiDl~n~---~~~~Rrpi-------~AdsAIMnP~~~ViALra-g~~LQiFnletK~k------------------ 99 (365)
T 2xzh_A 49 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 99 (365)
T ss_dssp EEEEEEETTST---TSCEEEEC-------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEE------------------
T ss_pred CEEEEEECCCC---CCcccccc-------ccceeeeCCCccEEEEec-CCeEEEechHHhhh------------------
Confidence 46888888863 22332222 122345688888666654 67788887766544
Q ss_pred CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCC----CCCeEEEEEcCCC-eE-EEEe--
Q 006126 364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LF-AFGF-- 433 (660)
Q Consensus 364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~v~~sp~~-~l-~s~~-- 433 (660)
++.. .....|..=.|- .+.|+-.++..|.-|++.. ..+.+.|..| ...|.....+++. ++ ++|-
T Consensus 100 ---lks~---~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 100 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp ---EEEE---ECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred ---hcce---ecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 2211 123455555566 8889999999999999974 4566666654 3456677778888 44 4433
Q ss_pred ----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeC--CC-CEEEEEeC---CCcEEEEEcCCC---e-eeeceeeeee
Q 006126 434 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--SL-NVLVSSGA---DAQLCVWDAVGW---K-KLCSKFLHSF 499 (660)
Q Consensus 434 ----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp--~~-~~l~s~s~---dg~i~vwd~~~~---~-~~~~~~~~~~ 499 (660)
-.|.+.+|..+. +.-+.++||......+.+.- .. ..++.+.. .+.+++.++... . ....+... +
T Consensus 174 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vd-i 251 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-V 251 (365)
T ss_dssp ETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEE-E
T ss_pred cCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccce-e
Confidence 235788998774 45667788865544333211 11 13333332 258899998542 1 11111111 1
Q ss_pred eeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEE
Q 006126 500 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 578 (660)
Q Consensus 500 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd 578 (660)
+-..........++..++.-..++. ..-|.|++||++++.++..-... ...|...+-+.+..=++.....|.|.--.
T Consensus 252 ~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 252 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 1111000145667888887666666 78899999999999998776553 55666555554444444555777776666
Q ss_pred CCCCee
Q 006126 579 TSTLEL 584 (660)
Q Consensus 579 ~~~~~~ 584 (660)
++...+
T Consensus 330 v~~~~i 335 (365)
T 2xzh_A 330 VEEENI 335 (365)
T ss_dssp ECTTTH
T ss_pred ECcccE
Confidence 665443
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.19 E-value=0.24 Score=49.97 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=123.1
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEECCCCe-EEEEEc---CCCCCeEEEEEcCC----CeEEEEeC----C----CeE
Q 006126 377 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 438 (660)
Q Consensus 377 ~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~-~~~~~~---~~~~~v~~v~~sp~----~~l~s~~~----d----~~I 438 (660)
.....++|. +..|+.+. +|.|.+++ .+++ .+..+. ........++++|+ +.|+++.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346788998 44455556 89999997 4454 222221 22356789999998 44433332 3 578
Q ss_pred EEEeCCCC--c-----ee-eEeec-cCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCeeeece--
Q 006126 439 LVHCPCTK--K-----TK-AKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK-- 494 (660)
Q Consensus 439 ~iwd~~~~--~-----~~-~~~~~-~~~~v~~l~~sp~~~~l~s~s~-------------dg~i~vwd~~~~~~~~~~-- 494 (660)
..|+...+ . .+ ..+.. .......+.|.|||.+.++.+. .|.|.-++... +.....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 88887644 1 11 11221 1123467899999987776432 14555555443 100000
Q ss_pred -eeeeeeeccCCCCCCeEEEEEec-CCcEEEEE--ecC--cEEEEeCCCCc------------------eeeeecCCCCC
Q 006126 495 -FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPTLN------------------HTSQLVPDKMD 550 (660)
Q Consensus 495 -~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~--~d~--~i~iwd~~~~~------------------~~~~~~~~~~~ 550 (660)
.......++. ....++|+| +|..+++- .+. .|.+.. .+. ++..+. ...
T Consensus 187 ~~~~i~a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~ 258 (354)
T 3a9g_A 187 PNSPIWSYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET 258 (354)
T ss_dssp TTCCEEEECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred CCCcEEEEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence 0111233443 356899999 67766662 222 244332 221 111220 113
Q ss_pred CCeEEEEEc-------cCCCEEEEEecCCeEEEEECCCC-eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEe
Q 006126 551 LPITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 551 ~~v~~~~~s-------~dg~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s 622 (660)
.....++|. .+|.++++....+.|...++... +...... +. .+ ..-.+..+++.| ||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~-~~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FF-KN---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---EC-TT---TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ec-cC---CCCCeeEEEECC-CCcEEEEEe
Confidence 457788883 56777777666788988888753 3321111 01 01 112355899999 787777654
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.18 E-value=0.068 Score=52.47 Aligned_cols=223 Identities=11% Similarity=0.025 Sum_probs=112.3
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCc---eee--EeeccCCCeEEEE
Q 006126 395 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKA--KLKGHQNRITCLA 463 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~---~~~--~~~~~~~~v~~l~ 463 (660)
..+.+||+.+.+....-..........+...++ .++.|+.+ ..+.+||+.+++ -.. .+......-..+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 367888888765433211111111111222356 66777755 368999988765 222 1211111112222
Q ss_pred EeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126 464 YSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 532 (660)
Q Consensus 464 ~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i 532 (660)
+ +++.++.|+.+ ..+.+||..+.+-.. +........ . .+++.. +++.++. |.+ ..+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTARE----G-AGLVVA-SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSCCB----S-CEEEEE-TTEEEEECCBCSSCBCCCEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCCcc----c-ceEEEE-CCEEEEECCCCCCcccceEEE
Confidence 2 66777777654 358889988754211 111111111 1 122222 5666665 333 46999
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
||+.+.+-...-...........+. -++++++.|+.+ ..+.+||+.+.+-...-.. +... .....
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r----~~~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM----TTPR----CYVGA 249 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC----SSCC----BSCEE
T ss_pred EeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC----CCcc----cceeE
Confidence 9998765432211111111112222 367777777764 4689999988764433111 1111 11112
Q ss_pred EEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCCC
Q 006126 608 IAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~~ 643 (660)
+.+ ++.+++.|+.+ ..|.+||+.+. .|...+
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 285 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVVT 285 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEcC
Confidence 222 56778888765 46788888764 466543
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.15 E-value=0.28 Score=49.93 Aligned_cols=261 Identities=10% Similarity=0.043 Sum_probs=158.1
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 363 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (660)
.+|.|-|+..+ ....+..+ .--+.-.+|..+.+|.-. ..++.|+|+++...
T Consensus 48 ~~vvIiDl~~~---~~~~rrpi-------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k------------------ 98 (494)
T 1bpo_A 48 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 98 (494)
T ss_dssp CEEEEEETTST---TSCEEEEC-------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE------------------
T ss_pred CeEEEEECCCC---Ccceeccc-------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh------------------
Confidence 46888888762 22222222 223455678777665554 67788887766544
Q ss_pred CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCC----CCCeEEEEEcCCC-eEE-EEe--
Q 006126 364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF-- 433 (660)
Q Consensus 364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~v~~sp~~-~l~-s~~-- 433 (660)
++.. .....|..=.|- .+.|+-.++..|.-|++.. ..+.+.|..| ...|.....+++. +++ +|-
T Consensus 99 ---lks~---~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 172 (494)
T 1bpo_A 99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (494)
T ss_dssp ---EEEE---ECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred ---hcce---ecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence 2111 123345544565 8899999999999999974 3566666654 3456677778888 443 332
Q ss_pred ----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCC---CCEEEEEeCC---CcEEEEEcCCC---e-eeeceeeee-
Q 006126 434 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---LNVLVSSGAD---AQLCVWDAVGW---K-KLCSKFLHS- 498 (660)
Q Consensus 434 ----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~~~l~s~s~d---g~i~vwd~~~~---~-~~~~~~~~~- 498 (660)
-.|.+.+|..+. +.-+.++||......+.+.-+ ...++.+... +.+.+.++... . ....+...-
T Consensus 173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 235788998774 456677888765544433211 1234444432 78999998653 1 111111110
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
.+..... ....++..++.-..++. ..-|.|++||++++.++..-... ..+|...+-+....=++.....|.|.--
T Consensus 252 fppe~~~--DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 252 FPPEAQN--DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp CCTTSTT--CCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred CCccccc--CceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEE
Confidence 1111111 45667888887777766 78899999999999998776543 5666666655555555555577877766
Q ss_pred ECCCCee
Q 006126 578 DTSTLEL 584 (660)
Q Consensus 578 d~~~~~~ 584 (660)
.++...+
T Consensus 328 ~v~e~~i 334 (494)
T 1bpo_A 328 CVEEENI 334 (494)
T ss_dssp EECTTTH
T ss_pred EEccccc
Confidence 6665543
No 311
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.16 Score=49.80 Aligned_cols=185 Identities=9% Similarity=0.018 Sum_probs=96.5
Q ss_pred CCEEEEEe-C----CcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCC-eEEEEeCC------CeEEEEeCCCCceeeE
Q 006126 386 GSHLFSAS-G----GKISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~-d----g~I~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~-~l~s~~~d------~~I~iwd~~~~~~~~~ 451 (660)
+..++.|+ + ..+.+||+.+.+....-.... .....+.+ ++ .++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 55556665 4 578999998876543322111 12222222 56 66777655 3689999887653322
Q ss_pred --eeccCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCc
Q 006126 452 --LKGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 520 (660)
Q Consensus 452 --~~~~~~~v~~l~~sp~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 520 (660)
+......-..+ . -+++.++.|+. -..+.+||+.+.+-. .+....... .-.+++.. +++
T Consensus 134 ~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~ 202 (306)
T 3ii7_A 134 PSMLTQRCSHGMV-E-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEAR-----KNHGLVFV-KDK 202 (306)
T ss_dssp CCCSSCCBSCEEE-E-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTE
T ss_pred CCCcCCcceeEEE-E-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccchh-----hcceEEEE-CCE
Confidence 11111111222 2 26667776653 345889999885321 111111111 11122223 566
Q ss_pred EEEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeE
Q 006126 521 HLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 585 (660)
Q Consensus 521 ~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~ 585 (660)
.++. |.+ ..+.+||+.+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+-.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6665 332 4689999987654322111111122222333 67788888854 56899999886533
No 312
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.11 E-value=0.00025 Score=53.82 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=49.2
Q ss_pred cccccHHHHHHHHHHhhchhhHHHHHHHHhhhccccccH--HHHHHHHhcCchHhHHHhhhhh
Q 006126 60 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDI--NYFREYITSGEWDNAEKYLSAF 120 (660)
Q Consensus 60 ~~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~~--~~l~~~i~~G~w~~~~~~l~~~ 120 (660)
+.+.+++|+.+-|++||..+||.+++.+|.+|.++..+- ..-.+-+++-.|..++.+-+.+
T Consensus 5 Lt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 5 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 566789999999999999999999999999999988752 2224556677888888776554
No 313
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0012 Score=65.96 Aligned_cols=200 Identities=7% Similarity=-0.033 Sum_probs=110.2
Q ss_pred eEEEEeCCCeEEEEeCCCCceeeEeecc-CCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEEcCCCeeeeceeeeeeeec
Q 006126 428 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SL-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 502 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~--sp-~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 502 (660)
.++.++.||.|+-+|..+|+.+-++... ..++....- .+ ++..++.. +.||.|..+|..+|.......+..+.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-- 89 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-- 89 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH--
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce--
Confidence 7889999999999999999998887653 122221110 01 22333333 68999999999887433222111000
Q ss_pred cCCCCCCeEE---EEE------ecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCe-----EEEEEc-----cCC
Q 006126 503 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI-----TYATYS-----CDG 562 (660)
Q Consensus 503 ~~~~~~~v~~---~~~------sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v-----~~~~~s-----~dg 562 (660)
.. +++.. ... +.+ ..+++ +.++.+...|+++|+.+..+........+ .+.... ..+
T Consensus 90 ~~---SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 90 ST---SPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp TT---CSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred ec---cccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 00 11211 001 123 44555 79999999999999999888653211111 111111 124
Q ss_pred CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCceec
Q 006126 563 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 639 (660)
Q Consensus 563 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~~~w 639 (660)
..|+.|..+..+.+.+ ++|+ ++.+....+.+... ...+. ..-..+. |+.+ +.++.||.|.-.|..+|+.+|
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 6788888888888877 5565 44333211111000 00000 0000112 4555 447889999999999999999
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.03 E-value=0.34 Score=48.82 Aligned_cols=226 Identities=10% Similarity=0.053 Sum_probs=115.9
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEECCCCeEE--EEEc---CCCCCeEEEEEcCC----CeEE-EEeCC-----CeEEE
Q 006126 378 SISCFALR--GSHLFSASGGKISIFSLETFQTL--ATFA---NPPPIATYFILLPQ----DLFA-FGFDD-----SSILV 440 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~dg~I~iwd~~~~~~~--~~~~---~~~~~v~~v~~sp~----~~l~-s~~~d-----~~I~i 440 (660)
....++|. |.++++-.+|.|.+++ +++.. ..+. ........++++|+ +.|+ +-... +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46788998 5544443389999998 44422 2221 22456789999998 4333 33322 67888
Q ss_pred EeCCCCc-----e-eeEee---ccCCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEEcCCCeeeec-----
Q 006126 441 HCPCTKK-----T-KAKLK---GHQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKLCS----- 493 (660)
Q Consensus 441 wd~~~~~-----~-~~~~~---~~~~~v~~l~~sp~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~----- 493 (660)
|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-+|... .....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 8876432 1 11132 111234689999999776664321 4555555543 10000
Q ss_pred ---eeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-E-ecC-------cEEEEeCCCCc------------------eee
Q 006126 494 ---KFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-I-HEG-------QIDVYEAPTLN------------------HTS 542 (660)
Q Consensus 494 ---~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~-~d~-------~i~iwd~~~~~------------------~~~ 542 (660)
........++. ....++|+| +|..+++ . .+. .|.+.. .+. ++.
T Consensus 189 ~~~~~~~i~a~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVYSLGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEEEECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEEEEcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeE
Confidence 00111223332 356789999 6776665 2 222 233332 222 111
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEE-EeecccccCCCCcCcccceEEEEEecCCCCEEEEE
Q 006126 543 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 621 (660)
Q Consensus 543 ~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~ 621 (660)
.+ .+......++| .+|.++++....+.|...++....... .-....+.. . . -.+..+++.| ||.+.++.
T Consensus 263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~--~--~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G--F--GRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S--S--CCEEEEEECT-TSCEEEEE
T ss_pred ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c--C--CCeeEEEECC-CCcEEEEE
Confidence 11 11234567777 567666666566778777766432110 000000100 1 1 1245899999 78776665
Q ss_pred e
Q 006126 622 L 622 (660)
Q Consensus 622 s 622 (660)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.99 E-value=0.14 Score=50.18 Aligned_cols=222 Identities=11% Similarity=0.085 Sum_probs=111.6
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeE--eeccCCCeEEEEEe
Q 006126 395 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK--LKGHQNRITCLAYS 465 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s 465 (660)
..+..||+.+.+....-....... .+++. -++ .++.|+.++ .+.+||+.+.+-... +......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 357788888765433211111111 12222 256 667776543 688999887643221 1111111122222
Q ss_pred CCCCEEEEEeCCC-----cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-------CcEEE
Q 006126 466 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------GQIDV 532 (660)
Q Consensus 466 p~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-------~~i~i 532 (660)
+++.++.|+.++ .+.+||+.+.+-.. +....... .-.+++.. +++.++. |.+ ..+.+
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR-----SSVGVGVV-GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC-----BSCEEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc-----cCceEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence 667777777653 57788988754211 11111111 11122222 5555555 332 35899
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccceEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 607 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 607 (660)
||+.+.+-...-...........+. -++++++.|+.+ ..+.+||+.+.+-...-. .. ... .....
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~---~~r----~~~~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-MN---MCR----RNAGV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-CS---SCC----BSCEE
T ss_pred EeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-CC---Ccc----ccCeE
Confidence 9998765432211111111112222 367777787765 468999998875433211 11 111 11112
Q ss_pred EEEecCCCCEEEEEeCCC-----eEEEEeCCCCceeccCCC
Q 006126 608 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 643 (660)
Q Consensus 608 v~~sp~d~~~l~s~s~Dg-----~v~iw~~~~~~~~w~~~~ 643 (660)
+.+ ++.+++.|+.++ .|.+||+.+. .|...+
T Consensus 248 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 248 CAV---NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp EEE---TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred EEE---CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 222 567888887654 4889998875 576554
No 316
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.97 E-value=0.63 Score=50.88 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=119.1
Q ss_pred CeEEEEEcCCC--eEEEEeCCCeEEEEeCCCCceeeEeec------cCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 006126 417 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG------HQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVG 487 (660)
Q Consensus 417 ~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~-s~s~dg~i~vwd~~~ 487 (660)
.+..++|.+.+ .+.+-...+.|+.+++........+.. ....+..+++...++.|. +-+..+.|.+.++..
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G 420 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence 46678888865 444555567888888764333333322 234678999998766554 555678899999865
Q ss_pred CeeeeceeeeeeeeccCCCCCCeEEEEEec-CCcEEEE-EecC--cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCC
Q 006126 488 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 563 (660)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 563 (660)
+. ...+..... .....+++.| .|..+.+ .... .|...++. |.....+... .-.....++++++++
T Consensus 421 -~~-----~~~l~~~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~-~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 421 -RS-----VGVVLKGEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS-GLSKPIALALDSRLG 489 (628)
T ss_dssp -CE-----EEEEEECTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS-SCSCEEEEEEETTTT
T ss_pred -Ce-----EEEEEeCCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec-cCCCccEEEEeCCCC
Confidence 21 111222222 4688999999 5555555 2222 67777774 5544444332 245678999999888
Q ss_pred EEEEEec-CCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 564 CIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 564 ~l~sg~~-dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.|+.+.. .+.|..+++.... ...+.. +.-.+ ..+++... +.++.+-...+.|...+..+|+
T Consensus 490 ~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~~~~~---P~glav~~--~~ly~tD~~~~~i~~~~k~~G~ 551 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLSGAN-RIVLED------SNILQ---PVGLTVFE--NWLYWIDKQQQMIEKIDMTGRE 551 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCS-CEEEEC------SSCSC---EEEEEEET--TEEEEEETTTTEEEEEETTSSS
T ss_pred EEEEEeCCCCEEEEEeCCCCc-eEEEEc------CCCCC---cEEEEEEC--CEEEEEECCCCeEEEEECcCCC
Confidence 8776654 5889999986543 333321 00011 33566544 4455555566778777777665
No 317
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.95 E-value=0.39 Score=54.05 Aligned_cols=236 Identities=12% Similarity=0.111 Sum_probs=134.3
Q ss_pred CCCeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEE-cCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEee
Q 006126 376 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK 453 (660)
Q Consensus 376 ~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~-~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~ 453 (660)
...|.++.-. ..+|..|...-+..||-.+.+..... ......|.++....+|.|..|+.+| +..||..+.+......
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~ 99 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPET 99 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSC
T ss_pred cceEEEEEECCCCCEEEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECccc
Confidence 4568888888 66666677333666774332211100 1123468888877777666666655 7899988764332111
Q ss_pred ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEE
Q 006126 454 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY 533 (660)
Q Consensus 454 ~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iw 533 (660)
.....|.++.. .+| .|..++.+ .+..+|..+++... +.....+... ..|.++...++|...+... +.+..+
T Consensus 100 ~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~---~~~~~~~l~~--~~i~~i~~d~~g~lWigt~-~Gl~~~ 170 (758)
T 3ott_A 100 DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS---FDTRRNGLPN--NTIYSIIRTKDNQIYVGTY-NGLCRY 170 (758)
T ss_dssp CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE---ECHHHHCCSC--SCEEEEEECTTCCEEEEET-TEEEEE
T ss_pred CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE---eccCCCCcCC--CeEEEEEEcCCCCEEEEeC-CCHhhC
Confidence 12335777654 355 45556655 67889987643211 1000011111 4688888888887766543 458888
Q ss_pred eCCCCceeeeecCCC----CCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEE
Q 006126 534 EAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA 609 (660)
Q Consensus 534 d~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 609 (660)
|..+++.. .+.... ....|.++...+++..|..|+. +-+..+|..+++........ ...+. ++.
T Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--------~~~i~--~i~ 238 (758)
T 3ott_A 171 IPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--------NNSIK--SLA 238 (758)
T ss_dssp ETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--------EEEEE--EEE
T ss_pred ccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--------CCeEE--EEE
Confidence 98765532 221111 1234888888887775555554 45888998877643321110 22233 666
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 610 AHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 610 ~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
..+ ++.+.+. +. +-+.+++..+++
T Consensus 239 ~d~-~g~lWig-T~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 239 LDG-NGDLLAG-TD-NGLYVYHNDTTP 262 (758)
T ss_dssp ECT-TCCEEEE-ET-TEEEEECCTTSC
T ss_pred EcC-CCCEEEE-eC-CceeEEecCCCc
Confidence 666 5665544 44 458888876654
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.91 E-value=0.31 Score=48.02 Aligned_cols=224 Identities=9% Similarity=0.056 Sum_probs=112.1
Q ss_pred eCCcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC-----C------CeEEEEeCCCCceeeE--eeccCC
Q 006126 393 SGGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAK--LKGHQN 457 (660)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~-----d------~~I~iwd~~~~~~~~~--~~~~~~ 457 (660)
+...+..||..+++-... +..+.......+...++ .++.|+. . ..+.+||+.+++-... +.....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 346789999998875431 21222233333344566 6666663 1 1378899887653221 111111
Q ss_pred CeEEEEEeCCCCEEEEEeCC--------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-e-c
Q 006126 458 RITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H-E 527 (660)
Q Consensus 458 ~v~~l~~sp~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~-d 527 (660)
.- +++.. +++.++.|+.+ ..+.+||..+.+-. .+...+... .-.+++. -+++.++.| . +
T Consensus 91 ~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r-----~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 91 LF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPYVV-----YGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp SC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSSCC-----BSCEEEE-ETTEEEEECCBCT
T ss_pred ce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCCcc-----cceeEEE-ECCEEEEEeCCCC
Confidence 11 22222 56677777632 45889999875321 111111111 1112222 355555553 3 2
Q ss_pred -----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCeeEEEeecccccCCC
Q 006126 528 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPG 597 (660)
Q Consensus 528 -----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~~~~~~~~~~~~~~g 597 (660)
..+.+||..+.+-...-........-..+. -++++++.|+.++ .+.+||+.+.+-...-. . +..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~---p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA-F---PQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC-C---SSC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC-C---CCc
Confidence 469999998765432211111111112222 3677888887754 58899998875433211 1 111
Q ss_pred CcCcccceEEEEEecCCCCEEEEEeCCC--------------eEEEEeCCCCceeccCC
Q 006126 598 TISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL 642 (660)
Q Consensus 598 h~~~~v~~~~v~~sp~d~~~l~s~s~Dg--------------~v~iw~~~~~~~~w~~~ 642 (660)
. .....+.+ ++.+++.|+.++ .|.+||+.+. +|...
T Consensus 234 r----~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 234 R----SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp C----BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred c----cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 1 11112222 567778777642 3667777664 57655
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.89 E-value=0.19 Score=50.40 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=101.1
Q ss_pred CCcEEEEECCC--CeEE-EEEcCC-----CCCeEEEEEcC--CC--eEEEEe-C--CCeEEEEeCCCCc----eeeEeec
Q 006126 394 GGKISIFSLET--FQTL-ATFANP-----PPIATYFILLP--QD--LFAFGF-D--DSSILVHCPCTKK----TKAKLKG 454 (660)
Q Consensus 394 dg~I~iwd~~~--~~~~-~~~~~~-----~~~v~~v~~sp--~~--~l~s~~-~--d~~I~iwd~~~~~----~~~~~~~ 454 (660)
+|.|.++|..+ ++.. ..+.+. .-....+.+.+ ++ +|+++. . +.+|.+|++..+. .+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999874 2221 122221 12445666655 44 454443 3 4577787765432 2233433
Q ss_pred c-CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe
Q 006126 455 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 516 (660)
Q Consensus 455 ~-~~~v~~l~~sp~~~~l~s~s~-----------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 516 (660)
. -...+.+.+.++|.+.++... .|.|.-+|.. + +.....+- ...+.++|+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~------~~~~~~~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D------VRVVAEGF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C------CEEEEEEE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e------EEEeecCC----cccCcceEC
Confidence 2 246789999999988776541 2344444442 1 11112221 357889999
Q ss_pred cCCcEEEEE--ecCcEEEEeCCC-Cce--eeeecCCCCCCCeEEEEEcc-CCCEEEEEecC-CeEEEEECC
Q 006126 517 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS 580 (660)
Q Consensus 517 p~~~~l~~~--~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~-dg~~l~sg~~d-g~I~iwd~~ 580 (660)
||++.++++ ..+.|+.||+.. +.. ...+. .....-.+++++ +|++.+++..+ +.|..|+..
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999988885 567899999863 332 12331 145677899999 59988866544 345555544
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.076 Score=53.93 Aligned_cols=152 Identities=15% Similarity=0.116 Sum_probs=93.8
Q ss_pred cCCC-eEEEEeCCCeEEEEeCCCCceeeEeecc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec-----
Q 006126 424 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 493 (660)
Q Consensus 424 sp~~-~l~s~~~d~~I~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~----- 493 (660)
..+| .++.+- ++.||.-++..+...+.+... -..|..+..+|+|++|+..+ +..|.|-.+-.+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3444 444443 477888887755444444432 12578899999999999876 56888888874321110
Q ss_pred --eeeeeeeeccCC--CCCCeEEEEEecC---CcEEEE-EecCcEEEEeCCCCc--ee------eeecCCCCCCCeEEEE
Q 006126 494 --KFLHSFQTGLVP--ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLN--HT------SQLVPDKMDLPITYAT 557 (660)
Q Consensus 494 --~~~~~~~~~~~~--~~~~v~~~~~sp~---~~~l~~-~~d~~i~iwd~~~~~--~~------~~~~~~~~~~~v~~~~ 557 (660)
....+..-+... ....|..+.|||- +..|++ ..|+.|++||+.... +. ..+........|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 011111111100 1167999999994 456777 799999999997522 11 1111122247789999
Q ss_pred EccCCCEEEEEe--cCCeEEEE
Q 006126 558 YSCDGKCIYVSC--KSGHVKVF 577 (660)
Q Consensus 558 ~s~dg~~l~sg~--~dg~I~iw 577 (660)
|+++|-.|+..+ ++|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999888777755 78888654
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.88 E-value=0.15 Score=49.84 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=94.9
Q ss_pred CCEEEEEe-C-----CcEEEEECCCCe---EEEE--EcCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCce
Q 006126 386 GSHLFSAS-G-----GKISIFSLETFQ---TLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 448 (660)
Q Consensus 386 ~~~l~s~~-d-----g~I~iwd~~~~~---~~~~--~~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~ 448 (660)
+..++.|+ + ..+.+||+.+.+ .... +........++.+ ++ .++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 55666665 4 369999998765 3322 2111122222222 56 66666644 3688999887653
Q ss_pred eeE--eeccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE
Q 006126 449 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 521 (660)
Q Consensus 449 ~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 521 (660)
... +......-.++.+ +++.++.|+.+ ..+.+||+.+.+-. .+...+... .-.+++.. +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMATKR-----SGAGVALL-NDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTEE
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCccc-----ccceEEEE-CCEE
Confidence 322 2111111122222 67777777654 46889998875321 111111111 11122222 5566
Q ss_pred EEE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCee
Q 006126 522 LLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 584 (660)
Q Consensus 522 l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~ 584 (660)
++. |.+ ..+.+||+.+.+-...-...........+. -+++.++.|+.+ ..|.+||+.+.+-
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 565 332 469999998765432211111111122222 367777787765 4688899887653
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.64 E-value=0.21 Score=49.20 Aligned_cols=221 Identities=12% Similarity=0.057 Sum_probs=110.0
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeC----C-----CeEEEEeCCCCceeeE--eeccCCCeEE
Q 006126 395 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTKAK--LKGHQNRITC 461 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~----d-----~~I~iwd~~~~~~~~~--~~~~~~~v~~ 461 (660)
..+.+||..+.+....-....... .+++. -++ +++.|+. + ..+.+||+.+.+-... +.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 468888988765433211111111 12222 255 6666665 2 3688999887643221 1111111222
Q ss_pred EEEeCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcE
Q 006126 462 LAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQI 530 (660)
Q Consensus 462 l~~sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i 530 (660)
+.+ +++.++.|+.+ ..+.+||..+.+-..... .+.... .- +++.. +++.++. |.+ ..+
T Consensus 118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~----~~-~~~~~-~~~iyv~GG~~~~~~~~~~ 186 (308)
T 1zgk_A 118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRRI----GV-GVAVL-NRLLYAVGGFDGTNRLNSA 186 (308)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCCB----SC-EEEEE-TTEEEEECCBCSSCBCCCE
T ss_pred EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCcccc----ce-EEEEE-CCEEEEEeCCCCCCcCceE
Confidence 222 66777776643 468889988754221111 111111 11 22222 5565555 332 469
Q ss_pred EEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcCcccce
Q 006126 531 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 605 (660)
Q Consensus 531 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 605 (660)
.+||+.+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+-...-.. +... ...
T Consensus 187 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r----~~~ 256 (308)
T 1zgk_A 187 ECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRR----SAL 256 (308)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC----SSCC----BSC
T ss_pred EEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC----CCCc----cce
Confidence 9999987654322111111111222222 67777777765 5699999988753332111 1111 111
Q ss_pred EEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCceeccCC
Q 006126 606 LVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 606 ~~v~~sp~d~~~l~s~s~D-----g~v~iw~~~~~~~~w~~~ 642 (660)
+++.. ++.+++.|+.+ ..+.+||+.+. +|...
T Consensus 257 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 293 (308)
T 1zgk_A 257 -GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEV 293 (308)
T ss_dssp -EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEE
T ss_pred -EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeec
Confidence 22222 56788888754 45788888765 56544
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.52 E-value=0.37 Score=47.08 Aligned_cols=183 Identities=11% Similarity=0.065 Sum_probs=93.7
Q ss_pred CCEEEEEe-C-----CcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCC-eEEEEeCCC-----eEEEEeCCCCceeeE
Q 006126 386 GSHLFSAS-G-----GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK 451 (660)
Q Consensus 386 ~~~l~s~~-d-----g~I~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~-~l~s~~~d~-----~I~iwd~~~~~~~~~ 451 (660)
+..++.|+ + ..+.+||..+.+-...-. ........+. -++ .++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55566665 3 368899998776443322 1111222222 256 666676553 588899887643322
Q ss_pred --eeccCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEE
Q 006126 452 --LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 522 (660)
Q Consensus 452 --~~~~~~~v~~l~~sp~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 522 (660)
+....... +++. -+++.++.|+.+ ..+.+||+.+.+-.. +........ . .+++.. +++.+
T Consensus 140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~-~~~~~~-~~~iy 208 (302)
T 2xn4_A 140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRS----G-AGVGVL-NNLLY 208 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCB----S-CEEEEE-TTEEE
T ss_pred CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCccccc----c-ccEEEE-CCEEE
Confidence 11111111 2222 256677776543 358899998753211 111111111 1 122222 56666
Q ss_pred EE-Eec-----CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----eEEEEECCCCe
Q 006126 523 LS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 583 (660)
Q Consensus 523 ~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg-----~I~iwd~~~~~ 583 (660)
+. |.+ ..+.+||+.+.+-...-......... .++ ..++++++.|+.++ .+.+||+.+.+
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 66 433 46999999876543221111101111 122 23677778887653 48999998875
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.50 E-value=0.83 Score=45.92 Aligned_cols=236 Identities=10% Similarity=0.033 Sum_probs=122.6
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEEEEcCC----CeEEEE-eC-------C
Q 006126 378 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----DLFAFG-FD-------D 435 (660)
Q Consensus 378 ~v~~v~~s--~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~----~~l~s~-~~-------d 435 (660)
....++|. |+.|+.+. .|.|++++.. +.....+. ........++++|+ +.|... +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 36788888 66244555 8999999853 43221111 22345689999995 433333 22 2
Q ss_pred CeEEEEeCCCC--c--eeeE-eec------cCCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEEcCCCeee
Q 006126 436 SSILVHCPCTK--K--TKAK-LKG------HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL 491 (660)
Q Consensus 436 ~~I~iwd~~~~--~--~~~~-~~~------~~~~v~~l~~sp~~~~l~s~s~-------------dg~i~vwd~~~~~~~ 491 (660)
..|..|++..+ . .... +.. .......+.|.|||.+.++.+. .|.|.-+|.... .-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35766766533 1 1111 111 1122457999999966665433 245666666531 00
Q ss_pred ece--------eeeeeeeccCCCCCCeEEEEEec-CCcEEEE--EecCcEEEEeCCCCce--------------------
Q 006126 492 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS--IHEGQIDVYEAPTLNH-------------------- 540 (660)
Q Consensus 492 ~~~--------~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~--~~d~~i~iwd~~~~~~-------------------- 540 (660)
... .......++. ....++|+| +|.+.++ +.++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 1111223443 477899999 6766665 2322222222222111
Q ss_pred -----------eeeecCCCCCCCeEEEEEcc-------CCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcc
Q 006126 541 -----------TSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 602 (660)
Q Consensus 541 -----------~~~~~~~~~~~~v~~~~~s~-------dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~ 602 (660)
+..+ .+......++|.. +|+++++....+.|...++..++....... . . ...
T Consensus 253 ~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~--~--~~~ 322 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---L--T--DRG 322 (353)
T ss_dssp CBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---S--G--GGC
T ss_pred cCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---c--c--CCC
Confidence 0011 1123566778763 467777766778888888876654332211 0 0 111
Q ss_pred cceEEEEEecCCCCEEEEEe-CCCeEEEEeC
Q 006126 603 LYPLVIAAHPLEPNRIALGL-TNGRVHVIEP 632 (660)
Q Consensus 603 v~~~~v~~sp~d~~~l~s~s-~Dg~v~iw~~ 632 (660)
..+..+++.| ||.+.++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 2355899999 888766543 344 44443
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.48 E-value=0.21 Score=58.37 Aligned_cols=188 Identities=12% Similarity=0.151 Sum_probs=114.7
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC--eEEEEeCCCeEEEEeCCC-CceeeEeecc----CCC
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNR 458 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~--~l~s~~~d~~I~iwd~~~-~~~~~~~~~~----~~~ 458 (660)
.+.+|.-...++.|+|+++...++.+.-.. .|.-=.|-.+. -|+| +..|+.|++.. ..+.+.+..| ...
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 344444447899999999888777766544 34444554444 3443 45799999964 2445555444 456
Q ss_pred eEEEEEeCCCCEEEEEe-------CCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEe--cCCcEEEE-Ee--
Q 006126 459 ITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH-- 526 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~-~~-- 526 (660)
|..-..+++.++++..+ ..|.+.+|..+.+ +....+||. +....+.+. +....+.+ +.
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha---~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhH---hhhheeccCCCCCCceEEEEEEec
Confidence 66777788899877543 3477888888762 222455665 233233222 22222333 32
Q ss_pred --cCcEEEEeCCCC---cee------ee-ecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEE
Q 006126 527 --EGQIDVYEAPTL---NHT------SQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 587 (660)
Q Consensus 527 --d~~i~iwd~~~~---~~~------~~-~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~ 587 (660)
.+.++|.++... .+. .. +.+........++..|+.-..++.-+.-|.|++||+.||.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 268999988542 111 11 11111133445678888888888888999999999999987654
No 326
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.38 E-value=0.82 Score=45.92 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee--eEee---ccCCCeEEEEEeCC---CCEEEEEeC-C-----CcEE
Q 006126 416 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--AKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQLC 481 (660)
Q Consensus 416 ~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~--~~~~---~~~~~v~~l~~sp~---~~~l~s~s~-d-----g~i~ 481 (660)
..-..++|.|+|.++++..++.|++++ +++.. ..+. ........++|+|+ +..|.++.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 345689999999444456679999998 44321 1111 12456889999998 555544433 2 6788
Q ss_pred EEEcCCCeeeeceee-eeee--eccCCCCCCeEEEEEecCCcEEEE
Q 006126 482 VWDAVGWKKLCSKFL-HSFQ--TGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 482 vwd~~~~~~~~~~~~-~~~~--~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
.|+...+.......+ ..+. .+.. .....++|.|||.+.++
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 888775322111111 1111 1111 13458999999976666
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.38 E-value=0.11 Score=52.72 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=95.2
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCc------------e
Q 006126 386 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T 448 (660)
Q Consensus 386 ~~~l~s~~dg~I~iwd~~~~~~~~~~~~~----~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~------------~ 448 (660)
|..++.+.++.||.-++......+.+... ...+..+..+|+| +||..+ +..|.|..+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 77888888899999888755555555533 2367889999999 666664 5678888776321 1
Q ss_pred eeEeec------cCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee--eccCCCCCCeEEEEEec
Q 006126 449 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ--TGLVPETTIVNHIQFHP 517 (660)
Q Consensus 449 ~~~~~~------~~~~v~~l~~sp---~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp 517 (660)
.+.+.- ...+|..+.||| .+..|++-..|+.|++||+........ .+.... -+.......|.+++|.+
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 122221 246799999999 456899999999999999986322111 111000 01111114688999999
Q ss_pred CCcEEEE-E--ecCcEEEE
Q 006126 518 DQIHLLS-I--HEGQIDVY 533 (660)
Q Consensus 518 ~~~~l~~-~--~d~~i~iw 533 (660)
++-.|.+ . .+|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 8877776 4 45666543
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.30 E-value=2 Score=48.19 Aligned_cols=321 Identities=11% Similarity=0.035 Sum_probs=170.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeee
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 350 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~ 350 (660)
.+++..|..|+. +-+..+|..+ ..+..+... ....|.++...++|...+ |+.+ -+.+++..+...
T Consensus 199 d~~~~~lWigt~-~Gl~~~~~~~----~~~~~~~~l---~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~----- 263 (758)
T 3ott_A 199 DTTRQCVWIGTE-GYLFQYFPST----GQIKQTEAF---HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPL----- 263 (758)
T ss_dssp ETTTTEEEEEEE-EEEEEEETTT----TEEEEEEEE---EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCC-----
T ss_pred ECCCCEEEEEEC-CCCeEEcCCC----CeEEeccCC---CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcE-----
Confidence 345565555554 3477777653 333322110 234688888888887544 4444 466666544432
Q ss_pred ccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEECCCCeEEEEEc-------CCCCCeEEE
Q 006126 351 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYF 421 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~-dg~I~iwd~~~~~~~~~~~-------~~~~~v~~v 421 (660)
..+........ . -....|.++... ...|..|. .| +.++.... ....+. .....|.++
T Consensus 264 ------~~~~~~~~~~~--~---l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i 329 (758)
T 3ott_A 264 ------QHIIHDSRNIQ--S---LTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSL 329 (758)
T ss_dssp ------EEECCCTTCTT--S---CSCSCEEEEEECTTCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEE
T ss_pred ------EEEEcCCCCcC--c---CCcCeEEEEEEcCCCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEE
Confidence 11111100000 0 123458888777 44555566 55 54443321 111111 123468888
Q ss_pred EEcCCCeEEEEeCCCeEEEEeCCCCc--eeeEeec-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeee
Q 006126 422 ILLPQDLFAFGFDDSSILVHCPCTKK--TKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 492 (660)
Q Consensus 422 ~~sp~~~l~s~~~d~~I~iwd~~~~~--~~~~~~~-------~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~ 492 (660)
.-..+|.|..|+.+| +..++..+++ ....+.. ....|.++.-.++|+..+ |+ ++-+..||..+++...
T Consensus 330 ~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~ 406 (758)
T 3ott_A 330 FRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIH 406 (758)
T ss_dssp EECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEE
Confidence 887777555566554 6667665432 1122210 124588888777776554 55 4678999998754321
Q ss_pred ceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCC-----cee---eeec--CCCCCCCeEEEEEccCC
Q 006126 493 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-----NHT---SQLV--PDKMDLPITYATYSCDG 562 (660)
Q Consensus 493 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~-----~~~---~~~~--~~~~~~~v~~~~~s~dg 562 (660)
..... ...... ...|.++...++|...+.+..+.+.++|..+. ... ..+. ..-....|.++..+++|
T Consensus 407 ~~~~~-~~~~~~--~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 483 (758)
T 3ott_A 407 YNIVD-NTGTYN--TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEG 483 (758)
T ss_dssp EEEEC-CC--CB--SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTS
T ss_pred eecCC-CcCCCC--CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCC
Confidence 11000 000000 14688888888887666666677888886421 111 1111 11113468999999999
Q ss_pred CEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCc
Q 006126 563 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 636 (660)
Q Consensus 563 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~~~ 636 (660)
.+.+.++..+-|..+|..+++.... ... +. .....+.++.... +|.+.+. +.+ -+..+++.+++
T Consensus 484 ~lWi~~~t~~Gl~~~d~~~~~~~~~-~~~-----~~-~~~~~~~~i~~d~-~g~lWig-t~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 484 NVWVLLYNNKGIDKINPRTREVTKL-FAD-----EL-TGEKSPNYLLCDE-DGLLWVG-FHG-GVMRINPKDES 547 (758)
T ss_dssp CEEEEETTCSSEEEEETTTTEEEEE-CTT-----TS-CGGGCEEEEEECT-TSCEEEE-ETT-EEEEECC--CC
T ss_pred CEEEEccCCCCcEEEeCCCCceEEe-cCC-----Cc-CCCcccceEEECC-CCCEEEE-ecC-ceEEEecCCCc
Confidence 9777444445588899988765432 110 10 1112234666666 6766654 444 48888876654
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.29 E-value=0.24 Score=49.47 Aligned_cols=115 Identities=14% Similarity=-0.043 Sum_probs=66.2
Q ss_pred EeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC---CcEEEE--E
Q 006126 451 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I 525 (660)
Q Consensus 451 ~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~--~ 525 (660)
.+...-...+.|+|.|+|+++++--..|.|++++..++.......+..+..... .....|+++|+ +.+|++ +
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEe
Confidence 333334567899999999977766558999999876544211111111111112 46889999995 334443 3
Q ss_pred --ecCcEEEEeCCCC----------cee-eeecCCCCCCCeEEEEEccCCCEEEEEe
Q 006126 526 --HEGQIDVYEAPTL----------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 526 --~d~~i~iwd~~~~----------~~~-~~~~~~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
.++.|.-|.+..+ +.+ ..+.. .....-..++|.|||.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 3456766766542 111 11221 1122345799999998777654
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.036 Score=55.22 Aligned_cols=195 Identities=10% Similarity=0.081 Sum_probs=102.4
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEcCC--CCCeEEEEE--cC-CC-eEEEE-eCCCeEEEEeCCCCceeeEeec---
Q 006126 386 GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFIL--LP-QD-LFAFG-FDDSSILVHCPCTKKTKAKLKG--- 454 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~~~~~~~~~--~~~v~~v~~--sp-~~-~l~s~-~~d~~I~iwd~~~~~~~~~~~~--- 454 (660)
+..++.++ ||.|.-+|..+|+...++... ...+. ..- .+ ++ .++.. +.||.|+.++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 45677777 999999999999999998754 22221 110 11 33 33333 6899999999988855433321
Q ss_pred -cCCCeEE---EEE-e----CCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEE---Ee--cCCc
Q 006126 455 -HQNRITC---LAY-S----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ---FH--PDQI 520 (660)
Q Consensus 455 -~~~~v~~---l~~-s----p~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s--p~~~ 520 (660)
...++.. ... . ..+..+++|+.+|.+...|+++|+.+...... ...++-.. ....|.. +. ..+.
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~-~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG-SKNGYFGS-QSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT-CBCC---------------------CC
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC-CCcccccc-cccccccccccccccCCC
Confidence 1122221 001 0 13557888999999999999998866544332 11110000 0000111 10 1123
Q ss_pred EEEE-EecCcEEEEeCCCCceeeeec-----CCCCCCCe-EEEEEccCCCEEEEEecCCeEEEEECCCCeeEE
Q 006126 521 HLLS-IHEGQIDVYEAPTLNHTSQLV-----PDKMDLPI-TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 586 (660)
Q Consensus 521 ~l~~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~v-~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~ 586 (660)
.++. ..+..+.+.+ ++|+ +-.+. ......++ ..-..+.|+.+ +.++.||.|+-+|..+|+.+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 4444 4556666666 3443 21110 00000000 00001234666 457789999999998888776
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.24 E-value=0.65 Score=45.68 Aligned_cols=176 Identities=13% Similarity=0.055 Sum_probs=86.2
Q ss_pred EEEEECCCCeEEEEEcCCCCCe-EEEEEcCCC-eEEEEeCC--------CeEEEEeCCCCceee--EeeccCCCeEEEEE
Q 006126 397 ISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKA--KLKGHQNRITCLAY 464 (660)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~-~l~s~~~d--------~~I~iwd~~~~~~~~--~~~~~~~~v~~l~~ 464 (660)
+..||..+.+-...-....... .+++.. ++ .++.|+.+ ..+.+||+.+.+-.. .+......- +++.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE
Confidence 7888998876432211111111 122222 55 66666632 368999998764322 111111111 2222
Q ss_pred eCCCCEEEEEeC-C-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126 465 SLSLNVLVSSGA-D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 532 (660)
Q Consensus 465 sp~~~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i 532 (660)
-+++.++.|+. + ..+.+||..+.+-.. +...+... .-.+++.. +++.++. |.+ ..+.+
T Consensus 147 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 147 -HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTAR-----SLFGATVH-DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp -ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSSCC-----BSCEEEEE-TTEEEEEEEECSSSEEEEEEE
T ss_pred -ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCCch-----hceEEEEE-CCEEEEEeccCCCCccceEEE
Confidence 35667777765 2 468899998753211 11111111 11122222 5566665 433 25899
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------CeEEEEECCCCeeEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRC 586 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------------g~I~iwd~~~~~~~~ 586 (660)
||+.+.+-...-...........+. -++++++.|+.+ ..|.+||+.+.+-..
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred EECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 9998765432211111111112222 366777777764 247788888775433
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.11 E-value=1.2 Score=43.80 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=109.6
Q ss_pred CcEEEEECCCCeEEEE-EcCCCCCeEEEEEcCCC-eEEEEeC----CC-------eEEEEeCCCCceeeE--eeccCCCe
Q 006126 395 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI 459 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~-~~~~~~~v~~v~~sp~~-~l~s~~~----d~-------~I~iwd~~~~~~~~~--~~~~~~~v 459 (660)
..+..||..+.+.... +..............++ .++.|+. ++ .+.+||..+++-... +.......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3488999988775442 22212222233344556 6777773 11 277889887643321 11111111
Q ss_pred EEEEEeCCCCEEEEEeCC-------CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-c---
Q 006126 460 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--- 527 (660)
Q Consensus 460 ~~l~~sp~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-d--- 527 (660)
+++.. +++.++.|+.+ ..+.+||..+.+-.....+.....+| +++. .+++.++. |. +
T Consensus 104 -~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 -GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH--------NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp -EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC--------EEEE-ETTEEEEECCEESSSC
T ss_pred -ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc--------EEEE-ECCEEEEEcCCCCCCC
Confidence 22222 66777777754 24788898874321111111011111 2222 35666665 33 1
Q ss_pred --CcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeEEEeecccccCCCCcC
Q 006126 528 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 600 (660)
Q Consensus 528 --~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~gh~~ 600 (660)
..+.+||..+.+-...-... ....-.+++. -+++.++.|+.+ ..+.+||+.+.+-... .. .+...
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r-- 244 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQER-- 244 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCC--
T ss_pred ccceEEEEcCCCCEEEECCCCC-CCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCcc--
Confidence 35999999876543221111 1111112222 366777777654 3578899987653322 11 11111
Q ss_pred cccceEEEEEecCCCCEEEEEeCC--------------CeEEEEeCCCCceeccCC
Q 006126 601 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 601 ~~v~~~~v~~sp~d~~~l~s~s~D--------------g~v~iw~~~~~~~~w~~~ 642 (660)
.....+.+ ++.+++.||.+ ..+.+||+.+. .|...
T Consensus 245 --~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 245 --SSISLVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp --BSCEEEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred --cceEEEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 11112222 56777777754 35778888664 57655
No 333
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.09 E-value=0.36 Score=56.54 Aligned_cols=261 Identities=10% Similarity=0.035 Sum_probs=143.5
Q ss_pred CcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC
Q 006126 284 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 363 (660)
Q Consensus 284 g~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (660)
.+|.|-|+..+ ....+. .-.--+.-.+|..+.+|.- ...++.|+++++...
T Consensus 48 ~~vvIidl~~~---~~~~rr-------pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~k------------------ 98 (1630)
T 1xi4_A 48 AQVVIIDMNDP---SNPIRR-------PISADSAIMNPASKVIALK-AGKTLQIFNIEMKSK------------------ 98 (1630)
T ss_pred ceEEEEECCCC---CCcccc-------cccchhhccCCCcceEEEe-cCCeEEEeehHHhhh------------------
Confidence 36778888752 222211 1122334567777755544 367788887765543
Q ss_pred CceeeecccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEECCC-CeEEEEEcCC----CCCeEEEEEcCCC-eEE-EEe--
Q 006126 364 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF-- 433 (660)
Q Consensus 364 ~~~~~~~~~~~h~~~v~~v~~s-~~~l~s~~dg~I~iwd~~~-~~~~~~~~~~----~~~v~~v~~sp~~-~l~-s~~-- 433 (660)
++.. ....+|..=.|- .+.|+-.++..|.-|++.. ..+.+.|..| ...|.....+++. +++ +|-
T Consensus 99 ---lks~---~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred ---hccc---ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 1111 123345544555 8888889999999999964 3444445444 3456667778888 443 333
Q ss_pred ----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEe--CC-CCEEEEEeC---CCcEEEEEcCCC-ee---eeceeeee-
Q 006126 434 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LS-LNVLVSSGA---DAQLCVWDAVGW-KK---LCSKFLHS- 498 (660)
Q Consensus 434 ----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~s--p~-~~~l~s~s~---dg~i~vwd~~~~-~~---~~~~~~~~- 498 (660)
-.|.+.+|..+.+ ..+.+.||.+....+... +. ...++.+.. .+.+.|.++... .. ...+.+.-
T Consensus 173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 3468888887643 445566776554444332 11 122222222 268888888553 11 00111110
Q ss_pred eeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEE
Q 006126 499 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 577 (660)
Q Consensus 499 ~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iw 577 (660)
.+..... ....++..++.-..+.. ..-|.|++||+.++.++..-... ..+|...+-+....=++.....|.|.-.
T Consensus 252 ~~~~~~~--Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 252 FPPEAQN--DFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred CCccccc--CcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEE
Confidence 1111111 34556777776556655 78899999999999987655432 4445444444332233333366666655
Q ss_pred ECCCCee
Q 006126 578 DTSTLEL 584 (660)
Q Consensus 578 d~~~~~~ 584 (660)
.++...+
T Consensus 328 ~v~~~~i 334 (1630)
T 1xi4_A 328 CVEEENI 334 (1630)
T ss_pred EEccchh
Confidence 5554443
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.08 E-value=0.66 Score=45.48 Aligned_cols=176 Identities=10% Similarity=0.014 Sum_probs=89.4
Q ss_pred CcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCC-eEEEEeCC-----CeEEEEeCCCCceeeE--eeccCCCeEEEEE
Q 006126 395 GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 464 (660)
Q Consensus 395 g~I~iwd~~~~~~~~~~--~~~~~~v~~v~~sp~~-~l~s~~~d-----~~I~iwd~~~~~~~~~--~~~~~~~v~~l~~ 464 (660)
..+.+||+.+.+....- .........+.+ ++ .++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 46889999876543321 111112222222 56 66666543 3688999887643221 1111111122222
Q ss_pred eCCCCEEEEEeCC-----CcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEEE
Q 006126 465 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVY 533 (660)
Q Consensus 465 sp~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~iw 533 (660)
+++.++.|+.+ ..+.+||+.+.+-.. +....... .-.+++.. +++.++. |.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIR-----SGAGVCVL-HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSSCC-----BSCEEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCCcc-----ccceEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence 66777777654 458899988754211 11111111 11122222 5666665 333 569999
Q ss_pred eCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CeEEEEECCCCeeE
Q 006126 534 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 585 (660)
Q Consensus 534 d~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d-----g~I~iwd~~~~~~~ 585 (660)
|+.+.+-...-......... +++. -++++++.|+.+ ..+.+||+.+.+-.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred eCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 99876543221111111111 2222 367777777754 45888998876533
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.07 E-value=0.68 Score=46.44 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCEEEEEe--CCcEEEEECCC--CeEE--EEEc-CCCCCeEEEEEcCCC-eEEEEeC-C---------CeEEEEeCCCCc
Q 006126 386 GSHLFSAS--GGKISIFSLET--FQTL--ATFA-NPPPIATYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 447 (660)
Q Consensus 386 ~~~l~s~~--dg~I~iwd~~~--~~~~--~~~~-~~~~~v~~v~~sp~~-~l~s~~~-d---------~~I~iwd~~~~~ 447 (660)
+..++.|+ ...+.+||+.+ .+.. ..+. .......++.+ ++ +++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 55555665 46899999864 2222 1122 11111222222 56 6666665 2 368999998764
Q ss_pred eeeE--ee-ccCCCeEEEEEeCCCCEEEEEeCC
Q 006126 448 TKAK--LK-GHQNRITCLAYSLSLNVLVSSGAD 477 (660)
Q Consensus 448 ~~~~--~~-~~~~~v~~l~~sp~~~~l~s~s~d 477 (660)
-... +. .....-.++ . .+++.++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~-~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTF-V-HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEE-E-ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEE-E-ECCEEEEEeCcC
Confidence 3221 11 111111222 2 467788888765
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.94 E-value=0.12 Score=47.50 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCeEEEEeCCCeEEEEeCCCCcee------eEee--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 006126 417 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------AKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 488 (660)
Q Consensus 417 ~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~------~~~~--~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~ 488 (660)
.+..++|+|+|.|... .+|.++-.+..+.... ..+- +... ..++.|.|+|.+.++ .||.|.-++--+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 5669999998833333 7777777776553221 1110 1111 478889999988777 5699887775331
Q ss_pred eeeeceeeeeee-eccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCcee-----eeecCCCCCCCeEEEEEccCC
Q 006126 489 KKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT-----SQLVPDKMDLPITYATYSCDG 562 (660)
Q Consensus 489 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~s~dg 562 (660)
.......-.+.. .+-- ..+..+.|.|+|.+.++. |+.++-....++... .+..+...-.....+.|.++|
T Consensus 118 ~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp TTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 111000000011 1111 257899999999998888 888654443322110 111111112234446688888
Q ss_pred CEEEEEecCCeEE
Q 006126 563 KCIYVSCKSGHVK 575 (660)
Q Consensus 563 ~~l~sg~~dg~I~ 575 (660)
.+.++. +|.++
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 777665 66443
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.87 E-value=0.63 Score=46.83 Aligned_cols=146 Identities=11% Similarity=0.006 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCc-eeeEe---eccCCCeEEEEEeCC---CCEEEEEeC----C----Cc
Q 006126 415 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKL---KGHQNRITCLAYSLS---LNVLVSSGA----D----AQ 479 (660)
Q Consensus 415 ~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~-~~~~~---~~~~~~v~~l~~sp~---~~~l~s~s~----d----g~ 479 (660)
-.....++|.|+|.|+++..++.|+++| .+++ .+..+ .........|+++|+ +..|.++.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456789999999555556679999997 3454 22211 112356889999997 445544433 3 56
Q ss_pred EEEEEcCCC--eeeeceee-eeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-------------CcEEEEeCCCCce--
Q 006126 480 LCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------GQIDVYEAPTLNH-- 540 (660)
Q Consensus 480 i~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-------------~~i~iwd~~~~~~-- 540 (660)
|..|+.... .......+ ..+..+.. .....++|.|||.+.++ +.. +.|..+|.. ++.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~ 182 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA 182 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence 777887653 11111111 11121111 13457999999987776 321 356666653 321
Q ss_pred ------eeeecCCCCCCCeEEEEEcc-CCCEEEE
Q 006126 541 ------TSQLVPDKMDLPITYATYSC-DGKCIYV 567 (660)
Q Consensus 541 ------~~~~~~~~~~~~v~~~~~s~-dg~~l~s 567 (660)
...+.. . -.....++|+| +|.++++
T Consensus 183 ~npf~~~~i~a~-G-~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 183 DNPFPNSPIWSY-G-HRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp TSSSTTCCEEEE-C-CSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCCcEEEE-c-cCCcceEEEeCCCCCEEEE
Confidence 111111 1 23356899999 6665554
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.78 E-value=0.22 Score=45.77 Aligned_cols=143 Identities=8% Similarity=-0.049 Sum_probs=82.0
Q ss_pred eEEEEeCCCeEEEEeCCCCce------eeEeec-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeee
Q 006126 428 LFAFGFDDSSILVHCPCTKKT------KAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 500 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~~~~------~~~~~~-~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 500 (660)
+|+....| +++.=.+.++.. ..++-. -=..+..++|+|+|.+.++ .+|.+.-.+..+..........+..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 56667777 666665554431 122211 1236779999999986666 6777666665442111100111001
Q ss_pred e--ccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCCCCceee-----eecCCCCCCCeEEEEEccCCCEEEEEecCCe
Q 006126 501 T--GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKSGH 573 (660)
Q Consensus 501 ~--~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~ 573 (660)
. +- ..-..+.|.|+|.+.++ .||.|+-++-.+...-. +..+..--..+..+.|.|+|.+.++. |+.
T Consensus 83 G~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 83 GNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp ECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred ccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 0 11 12368999999998888 77999888864322111 11110012467899999999888777 787
Q ss_pred EEEEECC
Q 006126 574 VKVFDTS 580 (660)
Q Consensus 574 I~iwd~~ 580 (660)
++-+...
T Consensus 156 lyr~~~P 162 (236)
T 1tl2_A 156 FYKALPP 162 (236)
T ss_dssp EEEECCC
T ss_pred EEecCCC
Confidence 6544333
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.58 E-value=1.3 Score=44.28 Aligned_cols=59 Identities=3% Similarity=-0.101 Sum_probs=30.8
Q ss_pred cEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC------eEEEEECCCCeeEEEee
Q 006126 529 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQIN 589 (660)
Q Consensus 529 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg------~I~iwd~~~~~~~~~~~ 589 (660)
.+.+||+.+.+-...-........ ..+...++++++.|+.++ .|.++++++++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 578999887653322111111111 222335778888888653 46677888887766544
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.58 E-value=1.6 Score=42.82 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=86.3
Q ss_pred EEEEECCCCeEEEE--EcCCCCCeEEEEEcCCC-eEEEEeCC-------CeEEEEeCCCCceeeE--eeccCCCeEEEEE
Q 006126 397 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAK--LKGHQNRITCLAY 464 (660)
Q Consensus 397 I~iwd~~~~~~~~~--~~~~~~~v~~v~~sp~~-~l~s~~~d-------~~I~iwd~~~~~~~~~--~~~~~~~v~~l~~ 464 (660)
+..||..+.+-... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+-... +......- +++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE
Confidence 77889887654332 1111112222222 56 66666653 2588899887643321 11111111 1222
Q ss_pred eCCCCEEEEEeC------CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec-----CcEEE
Q 006126 465 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 532 (660)
Q Consensus 465 sp~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d-----~~i~i 532 (660)
.+++.++.|+. -..+.+||+.+.+-. .+....... .-.+++.. +++.++. |.+ ..+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r-----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKTPR-----SMFGVAIH-KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSSCC-----BSCEEEEE-TTEEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCCCc-----ccceEEEE-CCEEEEEcCcCCCCccceEEE
Confidence 36677777764 235899999875321 111111111 11122332 4555555 432 35889
Q ss_pred EeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------CeEEEEECCCCeeEEE
Q 006126 533 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ 587 (660)
Q Consensus 533 wd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d--------------g~I~iwd~~~~~~~~~ 587 (660)
||+.+.+-...-......... +++ ..++++++.|+.+ ..+.+||+.+.+-...
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 227 FDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 999876543221111111111 222 2356777777654 3588889887654433
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.55 E-value=2.1 Score=44.56 Aligned_cols=111 Identities=13% Similarity=0.027 Sum_probs=63.3
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeee--ccCCCCCCeEEEEEecC---CcEEEEE--e--
Q 006126 456 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHPD---QIHLLSI--H-- 526 (660)
Q Consensus 456 ~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~--~-- 526 (660)
-...+.|+|.|+|+++++-...+.|++++..++.......+..... ... .....|+|+|+ +..|+++ .
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~---~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQ---NGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSS---CSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCC---CceeEEEECCCcCcCCEEEEEEeccc
Confidence 3456799999999877765444578888865543211111111110 011 46789999995 5555542 2
Q ss_pred ----------cCcEEEEeCCCC-------ceee-eecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 527 ----------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 527 ----------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
...|..|+...+ +.+. .+.. ........++|.|||.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence 235666665322 1111 1222 11345788999999987776543
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.16 E-value=1.6 Score=45.43 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee--eEeec------cCCCeEEEEEeCC---CCEEEEEeC------
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG------HQNRITCLAYSLS---LNVLVSSGA------ 476 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~--~~~~~------~~~~v~~l~~sp~---~~~l~s~s~------ 476 (660)
-...+.++|.|+| ++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|.....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999 5554433347998886655432 22221 2456779999995 445444332
Q ss_pred -------CCcEEEEEcCCC--eeeeceeee-eeeeccCCCCCCeEEEEEecCCcEEEE
Q 006126 477 -------DAQLCVWDAVGW--KKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS 524 (660)
Q Consensus 477 -------dg~i~vwd~~~~--~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~ 524 (660)
...|.-|+...+ .......+- .+..... .....|+|.|||.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence 235666665432 111111111 1111111 34788999999987776
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.09 E-value=0.71 Score=46.42 Aligned_cols=107 Identities=8% Similarity=-0.046 Sum_probs=58.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeee---eeeccCCCCCCeEEEEEecC---CcEEEE--Ee--
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPD---QIHLLS--IH-- 526 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~---~~~l~~--~~-- 526 (660)
.....|+|.|+|+.|+++...|.|++++... ... ..+.. +..... .....++++|+ +..|++ ..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~--~~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS--APLSGVPDVWAHGQ---GGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC--CCCBSCCCCCCSTT---CSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee--eEecCCcccccCCC---CCceeEEECCCCCCCCEEEEEEeCCC
Confidence 3568899999998344556789999998543 211 11110 111111 35789999996 444444 22
Q ss_pred -----cCcEEEEeCCCC--c--eeee----ecC-CCCCCCeEEEEEccCCCEEEEEe
Q 006126 527 -----EGQIDVYEAPTL--N--HTSQ----LVP-DKMDLPITYATYSCDGKCIYVSC 569 (660)
Q Consensus 527 -----d~~i~iwd~~~~--~--~~~~----~~~-~~~~~~v~~~~~s~dg~~l~sg~ 569 (660)
...|..|++... . .... +.. ......-..++|.|||.+.++.+
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 235777776432 1 1111 111 00112235799999996555543
No 344
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.07 E-value=1.8 Score=43.10 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=83.5
Q ss_pred EEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCCcee--eEe----eccCCCeEEEEEeCC---CCEEEEE-e--C
Q 006126 410 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKL----KGHQNRITCLAYSLS---LNVLVSS-G--A 476 (660)
Q Consensus 410 ~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~~~~--~~~----~~~~~~v~~l~~sp~---~~~l~s~-s--~ 476 (660)
.+...-..-+.++|.|+| ++++--..|.|++++..+++.. ..+ .........|+++|+ +..|... + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 333444556799999999 6555544899999987665432 111 123456889999995 3344432 2 3
Q ss_pred CCcEEEEEcCCCe-----eeecee-eeeeeeccCCCCCCeEEEEEecCCcEEEE-Ee-------------cCcEEEEeCC
Q 006126 477 DAQLCVWDAVGWK-----KLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------------EGQIDVYEAP 536 (660)
Q Consensus 477 dg~i~vwd~~~~~-----~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~-------------d~~i~iwd~~ 536 (660)
++.|.-|.+..+. ...... +..+..+.. .....++|.|||.+.++ +. .+.|.-.+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~---H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVI---HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSS---CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCC---ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 4566666665421 111111 111111111 23457999999987776 42 2445555543
Q ss_pred CCce--------eeeecCCCCCCCeEEEEEccCCCEEEE
Q 006126 537 TLNH--------TSQLVPDKMDLPITYATYSCDGKCIYV 567 (660)
Q Consensus 537 ~~~~--------~~~~~~~~~~~~v~~~~~s~dg~~l~s 567 (660)
++. ...+.. .| .....++|+|+|.+.++
T Consensus 183 -G~ip~~nPf~~~~i~a~-G~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 183 -GEPAPGNPFPGSPVYSY-GH-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp -SSBCTTCSSTTCCEEEB-CC-SBCCEEEECTTCCEEEE
T ss_pred -CCccCCCCCCCCeEEee-CC-CCcceEEECCCCCEEEE
Confidence 221 011111 22 33557899998876654
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.91 E-value=3.1 Score=40.62 Aligned_cols=242 Identities=6% Similarity=0.012 Sum_probs=122.0
Q ss_pred EecCCCCEEEEEeC--CCcEEEEeccCcCCCcceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCc----EEEEeccC
Q 006126 269 TSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT----HKLWKWQS 342 (660)
Q Consensus 269 ~~spdg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~----i~vw~~~~ 342 (660)
-|+++|.+|+.... ++.+...+.++ .....+. .+ .+--++++|.+|+.+..... ..+|..
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg----~~~~~l~------~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~-- 85 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNIDG----SNIHKLS------ND--TAMYINADKNYVYYVRNNNQKITSQTFFSY-- 85 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEETTS----CSCEEEE------EE--EEEEEEECSSEEEEEEECC------CCSSC--
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcCCC----CCCEEcc------CC--ceeeEEEcCCEEEEEECCCCcccccceecc--
Confidence 45678888887753 34444444442 2233321 12 23456899999988865321 011100
Q ss_pred CceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEeCCEEEEEe---C--CcEEEEECCCCeEEEEEcCCCCC
Q 006126 343 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS---G--GKISIFSLETFQTLATFANPPPI 417 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~l~s~~---d--g~I~iwd~~~~~~~~~~~~~~~~ 417 (660)
....+...+..++..... .......++..+++|+-.. + ..|...++... ....+..+..
T Consensus 86 ---------n~~~Iy~i~~dg~~~~~l-----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~- 149 (302)
T 3s25_A 86 ---------DRNSLCRIKRNGHGSTVL-----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL- 149 (302)
T ss_dssp ---------CSEEEEEEETTSCCCEEE-----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC-
T ss_pred ---------CCCeEEEEeCCCCcceEe-----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc-
Confidence 011112233333321111 1122223333377776654 3 45666676643 3344443322
Q ss_pred eEEEEEcCCC-eEEEEe-CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEEcCCCeeeec
Q 006126 418 ATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCS 493 (660)
Q Consensus 418 v~~v~~sp~~-~l~s~~-~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--g~i~vwd~~~~~~~~~ 493 (660)
..+++++ .|+-.+ ....|.+.++..+.....+. +... ..++|++.+|+....+ ..|..-++.....
T Consensus 150 ---~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--- 219 (302)
T 3s25_A 150 ---FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--- 219 (302)
T ss_dssp ---CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---
T ss_pred ---eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---
Confidence 3457778 555444 36789999987665443333 2222 2366999998877654 3566666665321
Q ss_pred eeeeeeeeccCCCCCCeEEEEEecCCcEEEEEe---cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 494 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 494 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
.. ... ..+ ..|+|++.+|+.+. .+.|...++ +|...+.+.. ..+. .+++.+.+|+-.
T Consensus 220 ~~----Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~~----~~~~--~i~i~~d~Iy~t 279 (302)
T 3s25_A 220 VV----LTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELAK----GEFC--NINVTSQYVYFT 279 (302)
T ss_dssp EE----CSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEET-TSCCCEEEEE----SCEE--EEEECSSEEEEE
T ss_pred EE----EeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEEC-CCCccEEeeC----Cccc--eEEEeCCEEEEE
Confidence 11 111 233 34788898887642 356777777 4444444432 1233 334455555544
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.72 E-value=2.1 Score=47.44 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=101.5
Q ss_pred CCEEEEEe-C----CcEEEEECCCCeEEEEE-c-----CCC-CCeEEEEEcC-CC-eEEEEeCCC------eEEEEeCCC
Q 006126 386 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPP-PIATYFILLP-QD-LFAFGFDDS------SILVHCPCT 445 (660)
Q Consensus 386 ~~~l~s~~-d----g~I~iwd~~~~~~~~~~-~-----~~~-~~v~~v~~sp-~~-~l~s~~~d~------~I~iwd~~~ 445 (660)
+..++.|+ + ..+.+||..+++....- . ... ..-.+++..+ ++ .++.|+.++ .+.+||+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66666666 3 46889998887654433 1 111 1112333333 67 777776443 588999887
Q ss_pred CceeeE--eeccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC-Cc
Q 006126 446 KKTKAK--LKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QI 520 (660)
Q Consensus 446 ~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~ 520 (660)
.+-... +..... -.+++...+++.++.|+.++ .+.+||..+..-.........+... .....+.+..+ ++
T Consensus 478 ~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 478 REWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQ 552 (695)
T ss_dssp TEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTE
T ss_pred CcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCE
Confidence 543221 111111 12233324788888887655 6899999885421111100011111 12223555655 55
Q ss_pred EEEEE-e--c-----CcEEEEeCCCCce-----eeeecC-CCCCCCeEEEEEccCCCEEEEEecC--------CeEEEEE
Q 006126 521 HLLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--------GHVKVFD 578 (660)
Q Consensus 521 ~l~~~-~--d-----~~i~iwd~~~~~~-----~~~~~~-~~~~~~v~~~~~s~dg~~l~sg~~d--------g~I~iwd 578 (660)
.++.| . + +.+.+||+.+... -..+.. ......-.+++...++++++.|+.+ ..|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 55554 3 2 3589999987761 111111 0001111123333447777777753 4699999
Q ss_pred CCCCeeE
Q 006126 579 TSTLELR 585 (660)
Q Consensus 579 ~~~~~~~ 585 (660)
+.+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9987644
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.65 E-value=5.2 Score=42.08 Aligned_cols=244 Identities=9% Similarity=0.046 Sum_probs=132.7
Q ss_pred EEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCC--C--------ceeee--cccCCCCCCeEEEEEe-----CCE
Q 006126 326 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS--K--------LVMTN--DIAADPKDSISCFALR-----GSH 388 (660)
Q Consensus 326 l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~--~~~~~h~~~v~~v~~s-----~~~ 388 (660)
+.+|+..|.++|+-+.+.+.... +-+|.+.. | .++.. .+..| ..--..+.+. |++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~-------IpVF~~~~~~G~G~t~esk~il~~~~~~~~g-D~HHp~~S~tdg~yDGry 144 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMR-------IPVFNVDSATGWGLTNESRHIMGDSAKFLNG-DCHHPHISMTDGKYDGKY 144 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEE-------ECSSSCCTTTCTTTBHHHHHHHGGGGGCCCC-CCCCCEEEEETTEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEE-------eecccCCCCcccCCchhHHHHHhcCCCccCC-CcCCCcccccCCeeeeEE
Confidence 56777789999999888876433 11222211 1 11110 00001 0111234444 778
Q ss_pred EEEEe--CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEc--CCC-eEEEEeCC-------CeE------------EEEeC
Q 006126 389 LFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILL--PQD-LFAFGFDD-------SSI------------LVHCP 443 (660)
Q Consensus 389 l~s~~--dg~I~iwd~~~~~~~~~~~-~~~~~v~~v~~s--p~~-~l~s~~~d-------~~I------------~iwd~ 443 (660)
|+... ...|-..++...++-+.+. .....+..+.+- |+. ++++++.. |.. ...|.
T Consensus 145 lfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~ 224 (638)
T 3sbq_A 145 LFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDA 224 (638)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEET
T ss_pred EEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcC
Confidence 88887 5789999999999887776 445677788876 555 77777643 221 01122
Q ss_pred CCCceeeEeeccCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEEcCC-------Ce--eeeceeeeee
Q 006126 444 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WK--KLCSKFLHSF 499 (660)
Q Consensus 444 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg---------------~i~vwd~~~-------~~--~~~~~~~~~~ 499 (660)
.+.+....+. -.+....+...++|++.++.+.+. .+.++++.. |+ .+....+. +
T Consensus 225 ~tm~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~-V 302 (638)
T 3sbq_A 225 ETMEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP-V 302 (638)
T ss_dssp TTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC-E
T ss_pred CccEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee-E
Confidence 2222211111 012223344567777777665432 244554421 11 00000011 1
Q ss_pred eeccC------------CCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC------ce-------eeeecCCCCCCC
Q 006126 500 QTGLV------------PETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL------NH-------TSQLVPDKMDLP 552 (660)
Q Consensus 500 ~~~~~------------~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~------~~-------~~~~~~~~~~~~ 552 (660)
..+.. |.......+.++|||++++++ .+.++.++|++.. +. +.... -.-.
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e---~GlG 379 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE---LGLG 379 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB---CCSC
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc---CCCc
Confidence 11100 001345678899999999994 6789999998742 11 11221 2456
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
....+|+++|.-..+-.-|..|.-|++...
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 778999999944445557999999998753
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.76 E-value=3.9 Score=45.24 Aligned_cols=198 Identities=11% Similarity=0.034 Sum_probs=102.0
Q ss_pred CCC-eEEEEeCC----CeEEEEeCCCCceeeEe-e------ccCCCeEEEEEeC-CCCEEEEEeCC------CcEEEEEc
Q 006126 425 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K------GHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDA 485 (660)
Q Consensus 425 p~~-~l~s~~~d----~~I~iwd~~~~~~~~~~-~------~~~~~v~~l~~sp-~~~~l~s~s~d------g~i~vwd~ 485 (660)
.++ .++.|+.+ ..+.+||+.+++-...- . .....-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345 66666643 46888998876543322 1 0111112333443 77777777754 35788998
Q ss_pred CCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec--CcEEEEeCCCCceeeeec---CCCCCCCeEEEEEc
Q 006126 486 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS 559 (660)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d--~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s 559 (660)
.+.+-. .+...+... .-.+++...+++.++. |.+ +.+.+||..+..-...-. .......-..+.+.
T Consensus 476 ~t~~W~---~~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREWS---MIKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEEE---ECCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcEE---ECCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 884321 111111111 1123334346777776 433 279999998765432211 00012222335556
Q ss_pred cC-CCEEEEEec--C-----CeEEEEECCCCee-----EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCC--
Q 006126 560 CD-GKCIYVSCK--S-----GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-- 624 (660)
Q Consensus 560 ~d-g~~l~sg~~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~D-- 624 (660)
.+ ++.++.|+. + +.+.+||+.+.+- -..+......+. ....++.+ . ++.+++.||.+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~~~~~~-~-~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGSQIKYI-T-PRKLLIVGGTSPS 619 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSCEEEEE-E-TTEEEEECCBCSS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccceEEEe-C-CCEEEEECCccCC
Confidence 55 667777776 2 4689999988761 111211111111 11112332 2 36788888743
Q ss_pred ------CeEEEEeCCCCceecc
Q 006126 625 ------GRVHVIEPLESEVEWG 640 (660)
Q Consensus 625 ------g~v~iw~~~~~~~~w~ 640 (660)
..|.+||+.+. .|.
T Consensus 620 ~~~~~~~~v~~yd~~t~--~W~ 639 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE--TLT 639 (695)
T ss_dssp CCCCTTTSEEEEETTTT--EEE
T ss_pred CCCCCCCeEEEEECCCC--eEE
Confidence 45899999875 465
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.38 E-value=5.4 Score=38.37 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=115.1
Q ss_pred CeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126 378 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ 456 (660)
Q Consensus 378 ~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~ 456 (660)
.|..++.. ...++.. ||.|..|-......+..-......|..++......++. . ||.|+.|-....-.+..-..-.
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccC
Confidence 56666666 4445554 99999998654221111111123566666655443333 4 8999999865422111111123
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 536 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~ 536 (660)
..|..++...+ ..+.-. ||.|+.|-....-.. .+. .... ..|..++...+... +.. ||.|+.|-..
T Consensus 102 ~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gql---g~~---~~~~---~~i~~i~~G~~~~~-~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 102 SGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQT---TVP---AEAQ---SGVTALDGGVYTAL-AVK-NGGVIAWGDN 167 (282)
T ss_dssp SSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTT---SCC---GGGG---SSEEEEEECSSEEE-EEE-TTEEEEEECC
T ss_pred CCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcC---CCC---ccCC---CCeEEEEcccCEEE-EEE-CCEEEEecCC
Confidence 46777776543 333445 999999987652111 111 1111 35666665543322 224 7889999765
Q ss_pred CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCC
Q 006126 537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 616 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~ 616 (660)
....+.. .. .....|..++...+.. ++. .||.|+.|-....-.+.. ... . ... +..++-.. ..
T Consensus 168 ~~gqlg~-p~-~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-p~~-----~--~~~--v~~i~~G~--~h 230 (282)
T 3qhy_B 168 YFGQTTV-PA-EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-PTE-----A--LSG--VSAIASGE--WY 230 (282)
T ss_dssp TTSTTSC-CG-GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-CGG-----G--GSS--CCEEEECS--SC
T ss_pred CCCCCCC-ce-ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-Ccc-----c--CCC--ceEEEcCC--CE
Confidence 4222111 10 1135677777654332 333 599999997654321111 100 0 112 33566544 23
Q ss_pred EEEEEeCCCeEEEEeCCCC
Q 006126 617 RIALGLTNGRVHVIEPLES 635 (660)
Q Consensus 617 ~l~s~s~Dg~v~iw~~~~~ 635 (660)
.++.. ||.|+.|--...
T Consensus 231 ~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 231 SLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp EEEEE--TTEEEEESTTCC
T ss_pred EEEEE--CCEEEEecCCCC
Confidence 44443 999999987654
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.09 E-value=6.9 Score=38.06 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=92.5
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-eEEEEe----CCCeEEEEeCCCCceeeEeeccCCCeEEEEEeCCCCE
Q 006126 396 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 470 (660)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~-~l~s~~----~d~~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 470 (660)
.|+..++..++... +.... +..|++++ .|+-.. ....|+..++.. .....+..+.. ..|+|+++.
T Consensus 89 ~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCE
Confidence 56777776654332 22111 23677888 666554 345677777764 34444544432 356788888
Q ss_pred EEEEeC-CCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEE-ec--CcEEEEeCCCCceeeeecC
Q 006126 471 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--GQIDVYEAPTLNHTSQLVP 546 (660)
Q Consensus 471 l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~ 546 (660)
|+..+. ...|.+.++..+.. .. +..+ .. ...++|++.+|+-. .+ ..|..-++.... ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence 887765 57888888877432 11 2221 12 23467999998874 22 367777775433 34443
Q ss_pred CCCCCCeEEEEEccCCCEEEEEec--CCeEEEEECCCCe
Q 006126 547 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE 583 (660)
Q Consensus 547 ~~~~~~v~~~~~s~dg~~l~sg~~--dg~I~iwd~~~~~ 583 (660)
...+ ..|+|++++|+-+.. .+.|..-++....
T Consensus 224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2233 348889999886633 3567777776443
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.54 E-value=12 Score=37.46 Aligned_cols=185 Identities=10% Similarity=0.076 Sum_probs=101.6
Q ss_pred cEEEEECCCC--eEEEEEcCC------CCCeEEEEEc---CC----C--eEEEEeCCCeEEEEeCCCCceeeEeeccCCC
Q 006126 396 KISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 458 (660)
Q Consensus 396 ~I~iwd~~~~--~~~~~~~~~------~~~v~~v~~s---p~----~--~l~s~~~d~~I~iwd~~~~~~~~~~~~~~~~ 458 (660)
.|.+||+.++ +.++++.-. ...+..+.+. |+ + ..++-+...-|.|+|+.+++.-+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 5778999998 888877532 3356777777 22 3 3444456778999999998877655 321
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecC----CcEEEEEecCcEEEEe
Q 006126 459 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYE 534 (660)
Q Consensus 459 v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~d~~i~iwd 534 (660)
|.|+.....+ .+|.-. .+. ..+..|+++|+ ++.|..+.=..-++|.
T Consensus 201 -----~~pd~~~~~~--i~G~~~-------------~~~----------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEY-------------EFK----------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEE-------------EEC----------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred -----CccccCcceE--ECCEEe-------------Eec----------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 3454111111 122111 111 35788999987 7777764222223333
Q ss_pred CC-----CC---ceeeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCeEEEEECCC-C---eeEEEeecccccCCCCcCc
Q 006126 535 AP-----TL---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST-L---ELRCQINLTAYAQPGTISL 601 (660)
Q Consensus 535 ~~-----~~---~~~~~~~~~~~~~~v~~~~~s-~dg~~l~sg~~dg~I~iwd~~~-~---~~~~~~~~~~~~~~gh~~~ 601 (660)
+. +. ..++.+-.......-..++++ .+|.+.++--+.+.|..|+..+ . +....+... ..
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d--------~~ 322 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS--------SR 322 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC--------TT
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC--------CC
Confidence 22 21 122222111001334456775 6777777777789999999876 1 112222211 22
Q ss_pred ccceEEEEEecCCCCEEEEEe
Q 006126 602 ELYPLVIAAHPLEPNRIALGL 622 (660)
Q Consensus 602 ~v~~~~v~~sp~d~~~l~s~s 622 (660)
-+++..+++.+ ++.+.+.++
T Consensus 323 l~~pd~~~i~~-~g~Lwv~sn 342 (381)
T 3q6k_A 323 FVFGTDISVDS-KGGLWFMSN 342 (381)
T ss_dssp CCSEEEEEECT-TSCEEEEEC
T ss_pred ccccCeEEECC-CCeEEEEEC
Confidence 24455777766 566655553
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.52 E-value=1.5 Score=46.08 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=76.2
Q ss_pred eEEEEeCCC----CceeeEeeccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCeee-------ecee-eeeeeecc
Q 006126 437 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKL-------CSKF-LHSFQTGL 503 (660)
Q Consensus 437 ~I~iwd~~~----~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-dg~i~vwd~~~~~~~-------~~~~-~~~~~~~~ 503 (660)
.|.+.|.+. +..+..+-.-......+.++|||+++++++. +.++.++|++.-... .... ......|
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 367777765 3333333334445667889999999887764 789999999852110 0000 1111122
Q ss_pred CCCCCCeEEEEEecCCcEEEEE--ecCcEEEEeCCCC----------ceeeeecCCCCCCCeEEEEE------ccCCCEE
Q 006126 504 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI 565 (660)
Q Consensus 504 ~~~~~~v~~~~~sp~~~~l~~~--~d~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~------s~dg~~l 565 (660)
-.....+|.++| ..+++ -|..|..|++... ..+..+.. ...+-.+.- .|||+||
T Consensus 378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWL 449 (638)
T ss_dssp ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEE
T ss_pred ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEE
Confidence 356789999999 55554 8999999998643 23344433 233334433 4789999
Q ss_pred EEEec
Q 006126 566 YVSCK 570 (660)
Q Consensus 566 ~sg~~ 570 (660)
++...
T Consensus 450 v~lnK 454 (638)
T 3sbq_A 450 VALSK 454 (638)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 98753
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.57 E-value=3.7 Score=41.32 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=80.1
Q ss_pred cEEEEEcCCC--eeeeceeeeeeeeccCCCCCCeEEEEEe---cC----CcEEEEE--ecCcEEEEeCCCCceeeeec--
Q 006126 479 QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV-- 545 (660)
Q Consensus 479 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~----~~~l~~~--~d~~i~iwd~~~~~~~~~~~-- 545 (660)
+|.+||+.++ +.++...+..-..... +.+..+++. |+ +.++..+ ..+.|.|+|+.+++.-+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~---S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKP---TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCG---GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccC---CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 4557788776 5554444321111111 468888888 22 3444444 45789999999887654431
Q ss_pred --CCCC------------CCCeEEEEEccC----CCEEEEEecCCeEEEEECC-----CCeeEEEeecccccCCCCcCcc
Q 006126 546 --PDKM------------DLPITYATYSCD----GKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLE 602 (660)
Q Consensus 546 --~~~~------------~~~v~~~~~s~d----g~~l~sg~~dg~I~iwd~~-----~~~~~~~~~~~~~~~~gh~~~~ 602 (660)
.... ...+..+++||+ +++|+-..-.+ -++|.+. .......+. ..|.....
T Consensus 201 ~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~-----~~G~kg~~ 274 (381)
T 3q6k_A 201 FKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPE-----LLGNRGKY 274 (381)
T ss_dssp GSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCE-----EEEECCTT
T ss_pred CccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceE-----EeeecCCC
Confidence 1100 246788999988 77777665544 2233332 221111111 01211101
Q ss_pred cceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q 006126 603 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 634 (660)
Q Consensus 603 v~~~~v~~sp~d~~~l~s~s~Dg~v~iw~~~~ 634 (660)
......+..+.+|.++++--....|..|+...
T Consensus 275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 12224566533677777877888999999875
No 354
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=86.38 E-value=0.53 Score=35.34 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHhhhcccc
Q 006126 65 KEELIYLIHQFLNEEEFKETLHKLEQETRVF 95 (660)
Q Consensus 65 ~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~ 95 (660)
-.-+.-||-.||+-.||+.|+..|+-|+|..
T Consensus 18 GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 18 GRLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 4558889999999999999999999999996
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.86 E-value=28 Score=33.24 Aligned_cols=183 Identities=8% Similarity=-0.034 Sum_probs=96.2
Q ss_pred CeEEEEEe-CCEEEEEeCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCeEEEEeCCCeEEEEeCCCCceeeEeeccC
Q 006126 378 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ 456 (660)
Q Consensus 378 ~v~~v~~s-~~~l~s~~dg~I~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~l~s~~~d~~I~iwd~~~~~~~~~~~~~~ 456 (660)
.|..++.. ...++. .||.|..|-......+..-..-...|..++...+. .+.-. ||.|+.|-....-.+..-....
T Consensus 64 ~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~ 140 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQ 140 (282)
T ss_dssp CCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred CEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCC
Confidence 46666665 444444 48999999765421111111112457777765554 23334 9999999765422121111123
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcEEEEEecCcEEEEeCC
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 536 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~d~~i~iwd~~ 536 (660)
..|..++...+ ..+.-. ||.+..|-....-... .+.. .. ..|..++...+... +. .||.|+.|-..
T Consensus 141 ~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-~p~~-----~~---~~v~~i~~G~~hs~-al-~~G~v~~wG~n 206 (282)
T 3qhy_B 141 SGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-VPAE-----AQ---SGVDDVAGGIFHSL-AL-KDGKVIAWGDN 206 (282)
T ss_dssp SSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-CCGG-----GG---SSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred CCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-Ccee-----cC---CCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence 45776665433 333334 7999999776521111 1111 11 35777766554433 34 68999999765
Q ss_pred CCceeeeecCCCCCCCeEEEEEccCCCEEEEEecCCeEEEEECCCC
Q 006126 537 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 582 (660)
Q Consensus 537 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~ 582 (660)
....+.. .. .....|..++...+...+++ ||.|+.|-....
T Consensus 207 ~~gqlg~-p~-~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 207 RYKQTTV-PT-EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp TTSTTCC-CG-GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCC-Cc-ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 4222111 00 11345667776544333333 999999976653
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.74 E-value=14 Score=38.25 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=61.8
Q ss_pred CCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCCeee-eceeeee-eeec----cCCCCCCeEEEEEecC----CcEEEE-
Q 006126 457 NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL-CSKFLHS-FQTG----LVPETTIVNHIQFHPD----QIHLLS- 524 (660)
Q Consensus 457 ~~v~~l~~sp~~~-~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~-~~~~----~~~~~~~v~~~~~sp~----~~~l~~- 524 (660)
...+.|+|.|+|. .|+++...|.|++++....... ....+.. ...+ .. .....|+|+|+ +.+.++
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e---~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDE---RGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCC---CSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCC---CcceeeEeCCCCcCCCEEEEEE
Confidence 3567899999996 4555678899999975432100 0001110 1111 11 46789999996 444333
Q ss_pred Ee--c----------CcEEEEeCCCC----------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 006126 525 IH--E----------GQIDVYEAPTL----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 571 (660)
Q Consensus 525 ~~--d----------~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~d 571 (660)
+. + ..|.-|.+..+ +.+..+........-..++|.|||.+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 32 1 14555665421 223333211123446789999999877765543
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.78 E-value=39 Score=34.95 Aligned_cols=108 Identities=7% Similarity=-0.090 Sum_probs=60.8
Q ss_pred CeEEEEEecCCc--EEEEEecCcEEEEeCCCC---ceeeeecCC-------CCCCCeEEEEEccC----CCEEEEEecC-
Q 006126 509 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL---NHTSQLVPD-------KMDLPITYATYSCD----GKCIYVSCKS- 571 (660)
Q Consensus 509 ~v~~~~~sp~~~--~l~~~~d~~i~iwd~~~~---~~~~~~~~~-------~~~~~v~~~~~s~d----g~~l~sg~~d- 571 (660)
....|+|.|+|. ++++-..|.|++++.... ..+..+... ........++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 567899999995 777778899999975322 122222110 01456789999996 3333332221
Q ss_pred -----------CeEEEEECCCC----------eeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCC
Q 006126 572 -----------GHVKVFDTSTL----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 625 (660)
Q Consensus 572 -----------g~I~iwd~~~~----------~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg 625 (660)
..|.-|.+..+ +.+..+.. ..+ .+. .-.++|.| ||.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~----~~~--~H~--g~~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE----LHR--KHL--GGQLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE----SSS--SSC--EEEEEECT-TSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC----CCC--ccc--CCcEeECC-CCcEEEEeCCCC
Confidence 14444665421 12222211 112 222 23899999 898888777543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.26 E-value=9.8 Score=43.66 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeecc
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 591 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 591 (660)
...+.+++..++..++++-+.|+++|+|++.+++++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345677788888999999999999999999999998887643
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.85 E-value=27 Score=40.01 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeeceee
Q 006126 457 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 496 (660)
Q Consensus 457 ~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 496 (660)
..+.++...++..++++-+.|+++|+|++.+++++....+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888889999999999999999999887665544
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=71.56 E-value=1.2e+02 Score=33.15 Aligned_cols=182 Identities=13% Similarity=0.012 Sum_probs=91.9
Q ss_pred CcEEEEECCCCe--EEEEEcCCCCCe-EEEEEcCCC-e-----EEEEeCC---CeEEEEeCCC--CceeeEeeccCCCeE
Q 006126 395 GKISIFSLETFQ--TLATFANPPPIA-TYFILLPQD-L-----FAFGFDD---SSILVHCPCT--KKTKAKLKGHQNRIT 460 (660)
Q Consensus 395 g~I~iwd~~~~~--~~~~~~~~~~~v-~~v~~sp~~-~-----l~s~~~d---~~I~iwd~~~--~~~~~~~~~~~~~v~ 460 (660)
..|+.|.+.+.. -...+.+....+ .....++++ . +++.+.+ ..+++.|... ++. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence 368888876642 233444433333 344556666 3 4443322 3566667553 332 223222211
Q ss_pred EEEEeCCCCEEEEE----------eCCCcEEEEEcCCCeeee--ceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-Eec
Q 006126 461 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKKLC--SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 527 (660)
Q Consensus 461 ~l~~sp~~~~l~s~----------s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d 527 (660)
.+..+.++.+++.. ...+.|...|+.++.... ......+...... ..+..+.+..+. .+++ ..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN--EVFNFISTTKDR-VFLATYDN 369 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT--EEEEEEEECSSC-EEEEEEET
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC--CeEEEEEEECCE-EEEEEEEC
Confidence 12344456555532 246778899987642100 0111111211111 467788888763 4444 355
Q ss_pred C--cEEEEeCCCCc-eeee-ecCCCCCCCeEEEEEccCCCEEE-EEec---CCeEEEEECCCCee
Q 006126 528 G--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKCIY-VSCK---SGHVKVFDTSTLEL 584 (660)
Q Consensus 528 ~--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~dg~~l~-sg~~---dg~I~iwd~~~~~~ 584 (660)
+ .+.++|+.++. .... +.... .+.+....+++++..++ +.+. -+.++.+|+. ++.
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred CEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 4 57888876664 2333 32221 34566667777775444 4333 3778899887 543
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=69.87 E-value=85 Score=30.59 Aligned_cols=209 Identities=10% Similarity=0.005 Sum_probs=110.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceeeeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEEe-----
Q 006126 311 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 385 (660)
Q Consensus 311 ~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s----- 385 (660)
.+.+..+........|+..+..|.+.-.....-.. .-|. ..|..+...+.-.....|.++..-
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~-----------~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~ 108 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPE-----------ASRT-ARGQHVANLLAFQPEERIAQVIQIRGYTD 108 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCB-----------CCSS-SCCEEHHHHTTCCTTCCEEEEEEESSTTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcC-----------CCcc-CCCEEHHHccCCCCCCEEEEEEEeccCCC
Confidence 45677776667777788888888765433211110 0000 122222222211234455554332
Q ss_pred CCEEEEEe-CCcEEEEECCCCe-------EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCC--CCc-------
Q 006126 386 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--TKK------- 447 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~~~-------~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~--~~~------- 447 (660)
..+++..+ +|.|+...+.... ..-.+.. ...+..+...... .++..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 46788888 8999998875422 1122333 3344444444444 77778889988877765 211
Q ss_pred --eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCeeeec--eeeeeee-eccCCCCCCeEEEEEe-cCCcE
Q 006126 448 --TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQ-TGLVPETTIVNHIQFH-PDQIH 521 (660)
Q Consensus 448 --~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-p~~~~ 521 (660)
..-.+. ....|.++...+++..++..+..|.++.-.+........ .-+..+. .... +.+..+... .+...
T Consensus 188 Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~---d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 188 GVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR---GRLVGALIVDDDSEL 263 (327)
T ss_dssp CEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT---CSEEEEEEECTTCEE
T ss_pred CeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC---CeEEEEEEeCCCccE
Confidence 111222 245577766666667899999999999887754322111 1111011 1111 344444443 34444
Q ss_pred EEEEecCcEEEEeCC
Q 006126 522 LLSIHEGQIDVYEAP 536 (660)
Q Consensus 522 l~~~~d~~i~iwd~~ 536 (660)
++.+.+|.+..++..
T Consensus 264 ~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 264 YAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEGGGCEEEEEGG
T ss_pred EEEcCCCeEEEEehh
Confidence 555788887777754
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.92 E-value=83 Score=29.75 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=98.7
Q ss_pred eEEEEeCCCeEEEE---eCCCCceeeEeeccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEEcCCCeeeeceeee--eee
Q 006126 428 LFAFGFDDSSILVH---CPCTKKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQ 500 (660)
Q Consensus 428 ~l~s~~~d~~I~iw---d~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~ 500 (660)
.|+.-+.+|.++-- ++..+.....+. ....|..+.. + +..+++..+.+|.++-..+..-. ....-.. .+.
T Consensus 37 ~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 37 GLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp CEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred EEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 55555666655433 322211110132 3455666544 4 46789999999999999876532 1111111 011
Q ss_pred eccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-------ceeeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 006126 501 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 572 (660)
Q Consensus 501 ~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~dg 572 (660)
.+ ..+..+....+...++. +..|.+..++...- +-+.-+... ....|..+...+++..++..+..|
T Consensus 114 eg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G 187 (276)
T 3no0_A 114 EG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKG 187 (276)
T ss_dssp TT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTS
T ss_pred CC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 11 35666555544445554 78888888775321 111112111 245677766666677888999999
Q ss_pred eEEEEECCCCee-------EEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEEE--EeCCC
Q 006126 573 HVKVFDTSTLEL-------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 634 (660)
Q Consensus 573 ~I~iwd~~~~~~-------~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~i--w~~~~ 634 (660)
.++...+..-.. +..+. . ++.+- .+.... +...++..+.+|.+.. +++..
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i~------~---~~~lv--~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVSG------T---KDTLV--DLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECCC------S---SSCEE--EEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred cEEEeEHHHcccCCCCCcceEEEc------C---CCcEE--EEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 998887643221 11111 1 22222 332222 3346777778888777 76543
No 363
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=66.46 E-value=1.1e+02 Score=30.47 Aligned_cols=206 Identities=10% Similarity=0.015 Sum_probs=90.0
Q ss_pred eEEEEeCCCeEEEEeCCC-CceeeEe--eccCCCeEEEEEeC--CCCEEEEEeCCC----cEEEEEc--CCCeeeeceee
Q 006126 428 LFAFGFDDSSILVHCPCT-KKTKAKL--KGHQNRITCLAYSL--SLNVLVSSGADA----QLCVWDA--VGWKKLCSKFL 496 (660)
Q Consensus 428 ~l~s~~~d~~I~iwd~~~-~~~~~~~--~~~~~~v~~l~~sp--~~~~l~s~s~dg----~i~vwd~--~~~~~~~~~~~ 496 (660)
.|.+|+..| +.+++... +..-... ......|.+|.+.| .+...+ ++..| .|...+- .+++.... ..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~-~~ 100 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATR-PP 100 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSB-CC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCc-cc
Confidence 677787776 44454332 2222211 12345699999998 454444 44444 3433321 11121110 00
Q ss_pred eeeeeccCC----CCCCeEEEEEecC--CcEEEE-EecCcEEEEeCCCCceeeeecC-----------------CCCCCC
Q 006126 497 HSFQTGLVP----ETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEAPTLNHTSQLVP-----------------DKMDLP 552 (660)
Q Consensus 497 ~~~~~~~~~----~~~~v~~~~~sp~--~~~l~~-~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~~ 552 (660)
. ....... ....|.++++.|. ...+.+ +..+.|...+- .++.-..+.. ......
T Consensus 101 ~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 101 A-FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp C-CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred c-CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 0 0000000 0024778899872 344444 55566555432 2222222110 011345
Q ss_pred eEEEEEccC-CCEEEEEecCCeEEEEECCCCeeEEEeecc---cccCCCCcCcccceEEEEEecCCCCEEEEEeCCCeEE
Q 006126 553 ITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLT---AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 628 (660)
Q Consensus 553 v~~~~~s~d-g~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~Dg~v~ 628 (660)
+.++.++|. ...|+.+..++.|+..+ ..|+.-..+... .+.+.........+.++.++|.++..+..++..+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g--- 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG--- 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE---
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe---
Confidence 788999873 45555565555554432 223222222110 0001000000112348889985556776666554
Q ss_pred EEeCCCCceeccCC
Q 006126 629 VIEPLESEVEWGKL 642 (660)
Q Consensus 629 iw~~~~~~~~w~~~ 642 (660)
||....+...|...
T Consensus 255 l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 IYRMDRREGVWKRI 268 (394)
T ss_dssp EEEEETTTTEEECG
T ss_pred EEEeCCCCCcceEC
Confidence 33333444456544
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=65.83 E-value=1.6e+02 Score=32.25 Aligned_cols=191 Identities=7% Similarity=-0.085 Sum_probs=97.0
Q ss_pred EcCCC--eEEEEeCCC----eEEEEeCCCCceee-Eee-ccCC------CeEEEEEeCCCCEEEEEe----------CCC
Q 006126 423 LLPQD--LFAFGFDDS----SILVHCPCTKKTKA-KLK-GHQN------RITCLAYSLSLNVLVSSG----------ADA 478 (660)
Q Consensus 423 ~sp~~--~l~s~~~d~----~I~iwd~~~~~~~~-~~~-~~~~------~v~~l~~sp~~~~l~s~s----------~dg 478 (660)
++|++ .+++-+..| .++++|+.+++.+. .+. .-++ ....++|..+..++++.. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 77888 444444444 79999999997763 122 0001 113447874444444321 124
Q ss_pred cEEEEEcCCCeeeeceeeeeeeeccCCCCCCeEEEEEecCCcE----EEE--E---ecCcEEEEeCCC--CceeeeecCC
Q 006126 479 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS--I---HEGQIDVYEAPT--LNHTSQLVPD 547 (660)
Q Consensus 479 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~--~---~d~~i~iwd~~~--~~~~~~~~~~ 547 (660)
.|+.|.+-+.... -..++.+... ..-.+...++++++ +++ + ....+++.|... ++. ..+...
T Consensus 217 ~v~~~~~Gt~~~~----~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 289 (711)
T 4hvt_A 217 SLYIWKRGESIEK----AKKLFEVPKE--YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP 289 (711)
T ss_dssp EEEEEETTSCGGG----CEEEEECCTT--SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC
T ss_pred EEEEEECCCChHH----CeEEeccCCC--ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC
Confidence 5888877663211 1113333321 22334556677663 333 2 124577777653 332 233221
Q ss_pred CCCCCeEEEEEccCCCEEEEE----------ecCCeEEEEECCCCe-------eEE-EeecccccCCCCcCcccceEEEE
Q 006126 548 KMDLPITYATYSCDGKCIYVS----------CKSGHVKVFDTSTLE-------LRC-QINLTAYAQPGTISLELYPLVIA 609 (660)
Q Consensus 548 ~~~~~v~~~~~s~dg~~l~sg----------~~dg~I~iwd~~~~~-------~~~-~~~~~~~~~~gh~~~~v~~~~v~ 609 (660)
. .. .+..+.++.+++.. ...+.|...++.++. ... .+.+ .....+..+.
T Consensus 290 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 356 (711)
T 4hvt_A 290 S-DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP---------TANEVFNFIS 356 (711)
T ss_dssp T-TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC---------CTTEEEEEEE
T ss_pred C-cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC---------CCCCeEEEEE
Confidence 1 11 12334566555532 235678888887642 111 2221 2223344788
Q ss_pred EecCCCCEEEEEeCCCe--EEEEeCCCC
Q 006126 610 AHPLEPNRIALGLTNGR--VHVIEPLES 635 (660)
Q Consensus 610 ~sp~d~~~l~s~s~Dg~--v~iw~~~~~ 635 (660)
|.. + .++++...++. |+++++.++
T Consensus 357 ~~~-~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 357 TTK-D-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp ECS-S-CEEEEEEETTEEEEEEECEETT
T ss_pred EEC-C-EEEEEEEECCEEEEEEEECCCC
Confidence 877 3 67788888875 566766555
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.44 E-value=1.2e+02 Score=29.21 Aligned_cols=244 Identities=8% Similarity=0.009 Sum_probs=120.8
Q ss_pred CCCCEEEEEeCCCcEEEEeccCcCCCc----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCceee
Q 006126 272 PDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 347 (660)
Q Consensus 272 pdg~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~~ 347 (660)
|+..++++.+.+|.|+--.+....... -...+.+. -.+.+..+........|+..+..|.+.-.....-..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k---e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~-- 75 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK---EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE-- 75 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC---CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC--
Confidence 455678888999988766554211000 11111122 245566666666667788888888765443321110
Q ss_pred eeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE----e-CCEEEEEe-CCcEEEEECCC-------CeEEEEEcCC
Q 006126 348 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLET-------FQTLATFANP 414 (660)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----s-~~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~~ 414 (660)
.-|. ..|..+...+.-.....|.++.. . +.+++..+ .|.++...+.. |...-.+...
T Consensus 76 ---------~~~~-a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~ 145 (307)
T 1zi0_A 76 ---------ATRG-ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 145 (307)
T ss_dssp ---------CCSS-SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT
T ss_pred ---------CCCC-CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC
Confidence 0000 12222221111123445555533 3 55677777 89999987742 2122223333
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCCC---------ceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 006126 415 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 484 (660)
Q Consensus 415 ~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vwd 484 (660)
..+..+....+. .++..+.+|.+..++...- ...-.+. ....|.++...+++..+++.+..|.++-.+
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 444444444444 7777888888877775421 1111222 234566665545566788889999988887
Q ss_pred cCCCeeee----ceeeeeeeeccCCCCCCeEEEEE-ecCCcEEEEEecCcEEEEeCC
Q 006126 485 AVGWKKLC----SKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAP 536 (660)
Q Consensus 485 ~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~d~~i~iwd~~ 536 (660)
+..-.... ......+... . +.+..+.. .++...++.+.+|.+.-+++.
T Consensus 224 ~~e~~~~~Rg~kG~~~~~~~~~-~---~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 224 VAEYPTKSRATKGVISIKVTER-N---GLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp GGGSCCCCTTSCCEESSCCCTT-T---CSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred HHHhccCCCCCCCEEeeEecCC-C---CeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 74421110 0111101111 1 24444433 344444555777776666654
No 366
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=55.83 E-value=5.3 Score=30.00 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=29.2
Q ss_pred hcCCc--ccccHHHHHHHHHHhhchhhHHHHHHHHhhhcccccc
Q 006126 56 ICPSF--EKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD 97 (660)
Q Consensus 56 ~~~~~--~~~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~~~~ 97 (660)
+++.| ++.+..++.+=|+++|++.| .|+..|-++-|++-.
T Consensus 4 ~~~~~~~~d~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 4 MASKIYIDERSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp ---------CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred cccccCccccchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 45555 56677789999999999999 999999999998764
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=51.26 E-value=1.9e+02 Score=28.54 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=110.6
Q ss_pred CCEEEEEe-CCcEEEEECCC-CeEEEEE--cCCCCCeEEEEEcC--CCeEEEEeCCC----eEEEEeCCCCceeeEee--
Q 006126 386 GSHLFSAS-GGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLK-- 453 (660)
Q Consensus 386 ~~~l~s~~-dg~I~iwd~~~-~~~~~~~--~~~~~~v~~v~~sp--~~~l~s~~~d~----~I~iwd~~~~~~~~~~~-- 453 (660)
...|..+. .| +.+++... +...... ......|.++++.| .+.+.+++..+ .|...+ ..|+.-..+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34566666 45 55555432 2221111 12345689999998 34555555555 454443 2232211111
Q ss_pred ----c--------cCCCeEEEEEeC-C-CCEEEEEeCCCcEEEEEcC--CCeeeeceee-ee---eee-----ccCCCCC
Q 006126 454 ----G--------HQNRITCLAYSL-S-LNVLVSSGADAQLCVWDAV--GWKKLCSKFL-HS---FQT-----GLVPETT 508 (660)
Q Consensus 454 ----~--------~~~~v~~l~~sp-~-~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~-~~---~~~-----~~~~~~~ 508 (660)
. ....|.++++.| + ...+.+++..+.|...+-. +++....... .. ... +.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~--~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD--GP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC--CC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC--CC
Confidence 1 112477888887 2 4555555555655444321 1111110000 00 000 000 03
Q ss_pred CeEEEEEecC-CcEEEE-EecCcEEEEeCCCCceeeeecCC-C--C--------CCCeEEEEEccC-CCEEEEEecCCeE
Q 006126 509 IVNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-K--M--------DLPITYATYSCD-GKCIYVSCKSGHV 574 (660)
Q Consensus 509 ~v~~~~~sp~-~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~--~--------~~~v~~~~~s~d-g~~l~sg~~dg~I 574 (660)
.+.+|.++|. ...+.+ ..++.|...+- .++.-..+... . + ...+.++.++|+ ...|+.+...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5788999883 333444 44454444332 23222222110 0 0 134889999985 46676666544 5
Q ss_pred EEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEEEEeC-----------CCeEEEEeCCCCceeccCC
Q 006126 575 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGKL 642 (660)
Q Consensus 575 ~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~s~s~-----------Dg~v~iw~~~~~~~~w~~~ 642 (660)
+..+- .++.-..+.. ..+.+ . ..++.+++++|.+...+..+.. ++...||...++-..|...
T Consensus 256 ~~s~D-~G~tW~~~~~--~l~~~--~-~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGD--AMPRE--V-GDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp EEEET-TTTEEECGGG--GSCTT--T-CSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred EEeCC-CCCcceECCC--CCCCC--C-ccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 44432 2332222211 01110 0 0123377887744444444432 3446677777665667643
No 368
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.23 E-value=52 Score=34.84 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=44.4
Q ss_pred CCeEEEEEecCCcEEEEE--e-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 006126 508 TIVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 570 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~~--~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg~~ 570 (660)
.....|.|.++|.+.++. . .+.|..++..+++....+... ....++.++|+||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEEe
Confidence 457789999999887742 1 125777888778765555332 2467899999999998887643
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.29 E-value=50 Score=35.27 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.8
Q ss_pred CeEEEEEecCCcEEEEE--e-----------cCcEEEEeCCCCceeeeecCCCCCCCeEEEEEccCCCEEEEE
Q 006126 509 IVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 568 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~--~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~sg 568 (660)
..-.|+|+|.|.++++- . .+.+.+.+..+++..+.+... ....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 45679999999966652 1 124667777777766555553 47889999999999988775
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=50.23 E-value=59 Score=35.44 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=30.1
Q ss_pred eEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 553 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 553 v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 578999999999999999999999888776
No 371
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=49.31 E-value=2.6e+02 Score=29.51 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=80.4
Q ss_pred CeEEEEEecCCcEEEEEecCcEEEEeCCCCceeeeecCCCC-CCCeEEEEEccCCCEEEEEec--------------CCe
Q 006126 509 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCK--------------SGH 573 (660)
Q Consensus 509 ~v~~~~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~sg~~--------------dg~ 573 (660)
.+....-.++|.++.. ....+..+|. .++.+..+..... ...-..+..-|+|+.|+.+.. +..
T Consensus 208 ~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~ 285 (571)
T 3elq_A 208 YLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDH 285 (571)
T ss_dssp CCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCE
T ss_pred eEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccE
Confidence 4445555677876654 2245788887 5666665543210 011123556789998876532 346
Q ss_pred EEEEECCCCeeEEEeecccccCC-----------------------CC------------------cCcccceEEEEEec
Q 006126 574 VKVFDTSTLELRCQINLTAYAQP-----------------------GT------------------ISLELYPLVIAAHP 612 (660)
Q Consensus 574 I~iwd~~~~~~~~~~~~~~~~~~-----------------------gh------------------~~~~v~~~~v~~sp 612 (660)
|...| .+|+.+..+........ |. ..+...+.++.+.+
T Consensus 286 I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~ 364 (571)
T 3elq_A 286 ILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDA 364 (571)
T ss_dssp EEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEET
T ss_pred EEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcC
Confidence 77788 88999888874322100 10 12334577999988
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeccCCCCcc
Q 006126 613 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTD 646 (660)
Q Consensus 613 ~d~~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~ 646 (660)
.++++|+|+-.- .|...+. +++-.|..-++..
T Consensus 365 ~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~~ 396 (571)
T 3elq_A 365 KDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSKG 396 (571)
T ss_dssp TTTEEEEEETTT-EEEEEET-TSCEEEEESCSTT
T ss_pred CCCEEEEECCcc-EEEEEcC-CCcEEEEECCCCC
Confidence 555677777655 7666675 7888998766653
No 372
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=45.50 E-value=2.9e+02 Score=29.03 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=31.1
Q ss_pred EEEEECCCCeEEEEEcCC--CCC---------------eEEEEEcCC-C-eEEEEe---CCCeEEEEeCCCCceeeEe
Q 006126 397 ISIFSLETFQTLATFANP--PPI---------------ATYFILLPQ-D-LFAFGF---DDSSILVHCPCTKKTKAKL 452 (660)
Q Consensus 397 I~iwd~~~~~~~~~~~~~--~~~---------------v~~v~~sp~-~-~l~s~~---~d~~I~iwd~~~~~~~~~~ 452 (660)
+.++|=.+|+.+.++.-. ... ..++++... . .++.+- ....|..||.+.+++...+
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W 308 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLW 308 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEE
Confidence 789998899888776522 111 123333221 2 333332 1235888998877665444
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.50 E-value=1.8e+02 Score=33.86 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=31.4
Q ss_pred CCeEEEEEecCCcEEEE-EecCcEEEEeCCCCceeeeec
Q 006126 508 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV 545 (660)
Q Consensus 508 ~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~ 545 (660)
..+.+++..++..++++ +.|+++|+|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 35566777788889888 899999999999999987754
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.15 E-value=1e+02 Score=32.64 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.7
Q ss_pred CeEEEEEcCCC-eEE-EEeC-----------CCeEEEEeCCCCceeeEeecc-CCCeEEEEEeCCCCEEEEEe
Q 006126 417 IATYFILLPQD-LFA-FGFD-----------DSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSG 475 (660)
Q Consensus 417 ~v~~v~~sp~~-~l~-s~~~-----------d~~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s 475 (660)
....+.|.++| +.+ +-.. ...|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45679999999 433 3321 226788888888876666543 35689999999999887754
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=39.28 E-value=2.6e+02 Score=26.72 Aligned_cols=200 Identities=12% Similarity=0.046 Sum_probs=110.4
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCcCCCc----ceeeeecCCCCCCCCeEEEEEecCCCEEEEEECCCcEEEEeccCCcee
Q 006126 271 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 346 (660)
Q Consensus 271 spdg~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~l~~~~h~~~V~~~~~spdg~~l~s~s~dg~i~vw~~~~~~~~ 346 (660)
-|+..++++.+.+|.|+--......... -...+.+.. .+.+..+........++..+..|.+.-.....-..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke---~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~- 80 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND---GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD- 80 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT---TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC---CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCC-
Confidence 4567789999999999887765421111 122222322 46677776666777888899999876555432111
Q ss_pred eeeeccceeEEEecCCCCceeeecccCCCCCCeEEEEE----e-CCEEEEEe-CCcEEEEECCC-------CeEEEEEcC
Q 006126 347 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLET-------FQTLATFAN 413 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----s-~~~l~s~~-dg~I~iwd~~~-------~~~~~~~~~ 413 (660)
.-|.. .|..+...+.-.....|.++.. . +.+++..+ .|.++...+.. |...-.+..
T Consensus 81 ----------~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~ 149 (312)
T 1suu_A 81 ----------SSRAS-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND 149 (312)
T ss_dssp ------------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT
T ss_pred ----------CCccC-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC
Confidence 00111 1111111111123334444422 2 45666667 89988887743 222222333
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCeEEEEeCCC---------CceeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 006126 414 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 483 (660)
Q Consensus 414 ~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vw 483 (660)
...+..+....++ .++..+.+|.+..+.... |.....+. ....|.++..-.++..+++.+..|..+..
T Consensus 150 -~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~ 227 (312)
T 1suu_A 150 -KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRL 227 (312)
T ss_dssp -TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred -CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEE
Confidence 4455555554444 788888999988887643 11112232 23456666555556678888999999988
Q ss_pred EcCC
Q 006126 484 DAVG 487 (660)
Q Consensus 484 d~~~ 487 (660)
++..
T Consensus 228 ~~~e 231 (312)
T 1suu_A 228 NMSK 231 (312)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 8854
No 376
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=37.96 E-value=13 Score=27.60 Aligned_cols=37 Identities=5% Similarity=0.119 Sum_probs=29.0
Q ss_pred cccccHHHHHHHHHHhhchh-hHHHHHHHHhhhccccc
Q 006126 60 FEKETKEELIYLIHQFLNEE-EFKETLHKLEQETRVFF 96 (660)
Q Consensus 60 ~~~~~~~e~~~lI~q~L~e~-G~~~sa~~L~~Es~~~~ 96 (660)
|++...++|+.+|-++..+. ||.-|..-|.++.|++.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCH
Confidence 34556777777777777776 99999999999999864
No 377
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=36.54 E-value=21 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHhhchhhHHHHHHHHhhhccc
Q 006126 63 ETKEELIYLIHQFLNEEEFKETLHKLEQETRV 94 (660)
Q Consensus 63 ~~~~e~~~lI~q~L~e~G~~~sa~~L~~Es~~ 94 (660)
++|+.+.|||+--|.==||...|..|..+-+.
T Consensus 14 K~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 14 KNREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 57999999999999999999999999877664
No 378
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.48 E-value=42 Score=31.56 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=39.5
Q ss_pred HHHhhchhhHHHHHHHHhhhccccc-c----HHHHHHHHhcCchHhHHHhhhhhcCCCCCc
Q 006126 72 IHQFLNEEEFKETLHKLEQETRVFF-D----INYFREYITSGEWDNAEKYLSAFTNMNDNT 127 (660)
Q Consensus 72 I~q~L~e~G~~~sa~~L~~Es~~~~-~----~~~l~~~i~~G~w~~~~~~l~~~~~~~~~~ 127 (660)
+.+.|++.-+..+...++.+-.-.. | ...|.=....|+|+.|++.|+....+++..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4466788888888888888766544 3 333444558999999999998775554443
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.08 E-value=37 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=33.5
Q ss_pred CCeEEEEEccCCCEEEEEecCCeEEEEECCCCeeEEEeec
Q 006126 551 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 590 (660)
Q Consensus 551 ~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 590 (660)
..+.+++..++..++++-+.|+++|||++.+++++.....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3445566778889999999999999999999999887664
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.60 E-value=1.4e+02 Score=31.92 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=39.9
Q ss_pred CeEEEEEccCCCEEEEEecC------------CeEEEEECCCCeeEEEeecccccCCCCcCcccceEEEEEecCCCCEEE
Q 006126 552 PITYATYSCDGKCIYVSCKS------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 619 (660)
Q Consensus 552 ~v~~~~~s~dg~~l~sg~~d------------g~I~iwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~~sp~d~~~l~ 619 (660)
..-.|+|+|+|+++++-..+ +.+.+.+..++++...+.. ..+.+ ++.++|+| |++.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-------P~gaE--~TG~~fsp-Dg~tlf 546 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-------PIGCE--VTGISFSP-DQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-------CTTCE--EEEEEECT-TSSEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-------CCCcc--CcCeeECC-CCCEEE
Confidence 45679999999966653221 3466677788887766552 22333 44999999 787766
Q ss_pred EE
Q 006126 620 LG 621 (660)
Q Consensus 620 s~ 621 (660)
..
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 381
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=30.09 E-value=3.8e+02 Score=25.82 Aligned_cols=161 Identities=10% Similarity=0.039 Sum_probs=90.4
Q ss_pred CCCeEEEE-EcC--CC-eEEEEeCCCeEEEEeCCCCc-------eeeEeeccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 006126 415 PPIATYFI-LLP--QD-LFAFGFDDSSILVHCPCTKK-------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 483 (660)
Q Consensus 415 ~~~v~~v~-~sp--~~-~l~s~~~d~~I~iwd~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~dg~i~vw 483 (660)
...|.++. ..+ +. .++..+.+|.|+...+.... ....++. ...+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34455543 332 35 89999999999998765422 1122333 3455555555556678888999998888
Q ss_pred EcC--CCeee----eceeeeeeeeccCCCCCCeEEEEEecCCcEEEE-EecCcEEEEeCCCC-------ceeeeecCCCC
Q 006126 484 DAV--GWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKM 549 (660)
Q Consensus 484 d~~--~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~d~~i~iwd~~~~-------~~~~~~~~~~~ 549 (660)
... .-... .....-.+..+ ..|.++...+++.+++. +..|.++.-.+... +-+..+.....
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 31111 11111101111 45777766655555555 78888888775432 22222322111
Q ss_pred CCCeEEEEEccCCCEEEEEecCCeEEEEECCC
Q 006126 550 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 550 ~~~v~~~~~s~dg~~l~sg~~dg~I~iwd~~~ 581 (660)
...+..+....+...++..+.+|.+.-++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 33455555444555666677777777776543
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.71 E-value=84 Score=34.26 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCEEEEEe-CCcEEEEECCCCeEEEEEcC
Q 006126 377 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 413 (660)
Q Consensus 377 ~~v~~v~~s~~~l~s~~-dg~I~iwd~~~~~~~~~~~~ 413 (660)
..|.++.+...++++-+ |.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34665555578999999 99999999999998887653
No 383
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=24.06 E-value=45 Score=18.37 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhchh
Q 006126 66 EELIYLIHQFLNEE 79 (660)
Q Consensus 66 ~e~~~lI~q~L~e~ 79 (660)
.|+++||-||-++.
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999987654
No 384
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=22.03 E-value=23 Score=25.07 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHhhchhhHH
Q 006126 62 KETKEELIYLIHQFLNEEEFK 82 (660)
Q Consensus 62 ~~~~~e~~~lI~q~L~e~G~~ 82 (660)
..+-.|++.||.+.|+.+||+
T Consensus 59 deqakelleliarllqklgyk 79 (96)
T 2jvf_A 59 DEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHhCCC
Confidence 455678999999999999985
No 385
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=21.84 E-value=71 Score=23.22 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHhhchhh
Q 006126 48 ALSSLIKLICPSFEKETKEELIYLIHQFLNEEE 80 (660)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~e~~~lI~q~L~e~G 80 (660)
.|.+||+...+.-..-+|-+|+++.++||+++-
T Consensus 30 eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 30 ELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp HHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 566666654444567899999999999998763
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.09 E-value=5.5e+02 Score=24.58 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=94.4
Q ss_pred EEEEEe-CCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC-eEEEEeCCCeEEEEeC---CC------CceeeE-
Q 006126 388 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP---CT------KKTKAK- 451 (660)
Q Consensus 388 ~l~s~~-dg~I~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~-~l~s~~~d~~I~iwd~---~~------~~~~~~- 451 (660)
.+++.+ +|.|+--.+...+ ....+... ..+..+...... .++..+..|.++-+.. .. |.++..
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 455556 7777766543211 00112222 233333333333 6666777887655543 21 222211
Q ss_pred --eeccCCCeEEEEEeC---CCCEEEEEeCCCcEEEEEcCCCeeee-ceeee--eeeeccCCCCCCeEEEEEec-CCcEE
Q 006126 452 --LKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLC-SKFLH--SFQTGLVPETTIVNHIQFHP-DQIHL 522 (660)
Q Consensus 452 --~~~~~~~v~~l~~sp---~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~--~~~~~~~~~~~~v~~~~~sp-~~~~l 522 (660)
+. ....|.++..-+ ++.+++..+.+|.++-..+....... ...+. .+..+ ..+..+.... +...+
T Consensus 86 i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 86 IPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGMNELF 159 (323)
T ss_dssp SCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSCSEEE
T ss_pred cCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCCCEEE
Confidence 22 233455543333 26688899999999998876432211 11111 02222 3455554444 44444
Q ss_pred EEEecCcEEEEeCCCC-------ceeeeecCCCCCCCeEEEEEccCCC-EEEEEecCCeEEEEECCC
Q 006126 523 LSIHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTST 581 (660)
Q Consensus 523 ~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~s~dg~-~l~sg~~dg~I~iwd~~~ 581 (660)
+.+.+|.+..++...- +-++-+... ....|.++..-+++. .+++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 4578888888876421 112222221 245566665544455 788888888887777643
No 387
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=20.47 E-value=1.1e+02 Score=20.34 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=24.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeccCCCCcc
Q 006126 616 NRIALGLTNGRVHVIEPLESEVEWGKLPFTD 646 (660)
Q Consensus 616 ~~l~s~s~Dg~v~iw~~~~~~~~w~~~~~~~ 646 (660)
.+...-+.||..+.|+..+++..|..+....
T Consensus 8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~ 38 (50)
T 2dk1_A 8 RWVEGITSEGYHYYYDLISGASQWEKPEGFQ 38 (50)
T ss_dssp CEEECCCSTTCCCEEESSSCCEESSCCTTCC
T ss_pred CeEEEECCCCCEEEEECCCCCEEeeCChhhh
Confidence 3444556789999999999999999876653
Done!