Query 006128
Match_columns 660
No_of_seqs 201 out of 2233
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 100.0 5.5E-76 1.9E-80 648.0 43.9 504 41-654 24-539 (539)
2 3g7s_A Long-chain-fatty-acid-- 100.0 1.5E-75 5.3E-80 646.2 43.8 517 32-647 9-543 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 4.5E-75 1.5E-79 640.6 45.6 521 20-646 4-535 (536)
4 3etc_A AMP-binding protein; ad 100.0 2.6E-74 8.8E-79 638.6 48.0 511 37-646 51-579 (580)
5 3r44_A Fatty acyl COA syntheta 100.0 2.8E-74 9.7E-79 631.0 44.0 499 38-648 12-515 (517)
6 1v25_A Long-chain-fatty-acid-C 100.0 1.1E-74 3.8E-79 637.8 39.7 504 41-648 17-538 (541)
7 3o83_A Peptide arylation enzym 100.0 2.2E-74 7.4E-79 636.0 38.7 500 41-646 29-540 (544)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.3E-73 7.8E-78 622.5 46.3 488 41-645 1-503 (504)
9 3rix_A Luciferase, luciferin 4 100.0 2.6E-74 9E-79 636.5 39.1 524 32-651 10-546 (550)
10 2d1s_A Luciferase, luciferin 4 100.0 2.8E-73 9.5E-78 627.3 44.4 510 41-651 24-548 (548)
11 3c5e_A Acyl-coenzyme A synthet 100.0 6.2E-73 2.1E-77 626.7 47.3 525 23-646 19-562 (570)
12 1pg4_A Acetyl-COA synthetase; 100.0 2.5E-73 8.5E-78 639.4 43.7 523 40-650 74-625 (652)
13 4fuq_A Malonyl COA synthetase; 100.0 1.3E-73 4.3E-78 623.7 39.8 491 46-646 4-500 (503)
14 1ry2_A Acetyl-coenzyme A synth 100.0 9.3E-73 3.2E-77 634.9 42.3 533 40-651 80-642 (663)
15 3ivr_A Putative long-chain-fat 100.0 3.7E-73 1.3E-77 621.9 36.5 492 40-647 4-502 (509)
16 3e7w_A D-alanine--poly(phospho 100.0 5E-72 1.7E-76 613.0 42.7 487 42-647 1-504 (511)
17 3fce_A D-alanine--poly(phospho 100.0 2.2E-72 7.5E-77 616.3 39.1 488 42-647 1-505 (512)
18 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-71 5.2E-76 612.1 45.0 504 36-642 18-528 (529)
19 4gr5_A Non-ribosomal peptide s 100.0 2.1E-72 7.1E-77 623.7 37.4 479 38-643 71-568 (570)
20 3rg2_A Enterobactin synthase c 100.0 2.6E-71 9E-76 620.3 46.0 502 40-650 25-538 (617)
21 4dg8_A PA1221; ANL superfamily 100.0 9.8E-72 3.4E-76 621.2 41.1 476 40-650 25-517 (620)
22 3l8c_A D-alanine--poly(phospho 100.0 1.3E-71 4.4E-76 611.8 38.7 493 40-647 2-513 (521)
23 1amu_A GRSA, gramicidin synthe 100.0 3.3E-71 1.1E-75 611.9 40.1 475 40-644 37-527 (563)
24 3ipl_A 2-succinylbenzoate--COA 100.0 2.7E-71 9.1E-76 606.2 34.8 491 43-647 2-498 (501)
25 3tsy_A Fusion protein 4-coumar 100.0 4.6E-71 1.6E-75 650.1 37.5 540 16-655 39-591 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 4E-71 1.4E-75 603.9 32.1 478 38-642 18-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 4.6E-69 1.6E-73 599.8 44.3 517 29-655 8-572 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 9.8E-69 3.3E-73 598.5 40.5 504 39-646 8-567 (590)
29 3ite_A SIDN siderophore synthe 100.0 1.6E-69 5.4E-74 600.6 33.0 522 36-654 14-552 (562)
30 2vsq_A Surfactin synthetase su 100.0 1.8E-66 6.2E-71 625.9 46.3 480 38-643 460-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.8E-56 6.1E-61 486.9 30.6 401 40-514 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 5.6E-50 1.9E-54 416.1 20.9 314 219-648 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 9.2E-44 3.1E-48 381.2 25.6 334 216-639 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 9.1E-44 3.1E-48 382.0 25.0 338 216-642 88-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 6.5E-43 2.2E-47 374.7 27.8 334 216-639 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 2.2E-27 7.6E-32 248.1 17.7 236 217-521 88-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.3 2.4E-12 8.3E-17 108.0 8.3 99 513-638 1-102 (109)
38 3gxs_A Phenylacetate-coenzyme 99.2 2.9E-11 9.9E-16 101.1 8.5 99 513-638 1-102 (109)
39 4eql_A 4-substituted benzoates 98.7 5.9E-08 2E-12 104.0 11.4 156 385-563 302-481 (581)
40 4b2g_A GH3-1 auxin conjugating 98.6 6.8E-07 2.3E-11 95.9 15.9 156 385-563 307-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.4 1.7E-06 5.8E-11 92.5 13.3 159 383-563 302-488 (581)
42 3qov_A Phenylacetate-coenzyme 87.2 2.7 9.2E-05 43.5 10.6 122 57-181 86-216 (436)
43 2y4o_A Phenylacetate-coenzyme 86.9 3.7 0.00013 42.6 11.5 106 56-164 91-200 (443)
44 2y27_A Phenylacetate-coenzyme 86.7 2.6 8.8E-05 43.7 10.1 106 56-164 89-198 (437)
45 3ipl_A 2-succinylbenzoate--COA 81.9 12 0.00042 39.2 13.0 120 55-180 161-283 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 73.5 34 0.0012 36.2 13.5 121 55-181 180-308 (539)
47 3hgu_A EHPF; phenazine, antibi 73.5 13 0.00043 37.3 9.6 106 55-164 89-221 (369)
48 2d1s_A Luciferase, luciferin 4 71.4 19 0.00065 38.3 10.9 120 57-180 192-318 (548)
49 4dg8_A PA1221; ANL superfamily 68.9 24 0.00082 38.3 11.1 122 55-182 162-287 (620)
50 4gs5_A Acyl-COA synthetase (AM 68.0 23 0.00078 35.3 10.0 103 53-163 33-138 (358)
51 3g7s_A Long-chain-fatty-acid-- 67.5 38 0.0013 36.0 12.2 107 218-328 32-140 (549)
52 3ni2_A 4-coumarate:COA ligase; 66.2 28 0.00095 36.9 10.8 101 218-328 35-137 (536)
53 3o83_A Peptide arylation enzym 65.6 32 0.0011 36.4 11.2 103 56-164 190-297 (544)
54 3ivr_A Putative long-chain-fat 64.8 29 0.00099 36.4 10.6 98 218-327 19-118 (509)
55 1v25_A Long-chain-fatty-acid-C 64.7 40 0.0014 35.7 11.7 101 218-326 31-133 (541)
56 3rix_A Luciferase, luciferin 4 64.7 12 0.00042 39.8 7.7 102 220-328 35-138 (550)
57 3r44_A Fatty acyl COA syntheta 64.4 32 0.0011 36.2 10.8 102 56-164 169-274 (517)
58 3fce_A D-alanine--poly(phospho 62.0 33 0.0011 35.9 10.4 122 55-181 142-271 (512)
59 4gr5_A Non-ribosomal peptide s 61.9 27 0.00094 37.3 9.8 121 55-181 212-336 (570)
60 3e7w_A D-alanine--poly(phospho 61.7 54 0.0018 34.3 12.0 121 55-180 141-269 (511)
61 3rg2_A Enterobactin synthase c 61.3 69 0.0024 34.5 13.0 120 56-181 183-312 (617)
62 3kxw_A Saframycin MX1 syntheta 60.8 38 0.0013 36.2 10.8 104 55-163 165-275 (590)
63 3t5a_A Long-chain-fatty-acid-- 57.9 66 0.0023 33.1 11.8 106 218-327 37-147 (480)
64 1t5h_X 4-chlorobenzoyl COA lig 56.6 56 0.0019 34.1 10.9 98 218-325 15-116 (504)
65 3c5e_A Acyl-coenzyme A synthet 56.5 70 0.0024 34.0 11.9 121 56-181 205-332 (570)
66 1ry2_A Acetyl-coenzyme A synth 55.8 59 0.002 35.5 11.3 99 218-322 95-196 (663)
67 1amu_A GRSA, gramicidin synthe 54.9 62 0.0021 34.4 11.0 95 218-324 52-148 (563)
68 2v7b_A Benzoate-coenzyme A lig 54.4 42 0.0014 35.3 9.6 98 218-327 36-135 (529)
69 3tbh_A O-acetyl serine sulfhyd 53.4 48 0.0016 32.6 9.1 66 92-157 61-127 (334)
70 4fuq_A Malonyl COA synthetase; 52.8 36 0.0012 35.6 8.7 85 239-326 28-114 (503)
71 3etc_A AMP-binding protein; ad 51.7 57 0.002 34.9 10.1 98 218-322 69-168 (580)
72 1pg4_A Acetyl-COA synthetase; 48.1 80 0.0027 34.3 10.8 98 218-321 89-188 (652)
73 3ezx_A MMCP 1, monomethylamine 46.0 1.1E+02 0.0038 27.7 9.7 52 267-318 93-149 (215)
74 3vc3_A Beta-cyanoalnine syntha 45.5 79 0.0027 31.2 9.3 64 94-157 78-142 (344)
75 3nyq_A Malonyl-COA ligase; A/B 45.4 1.1E+02 0.0036 32.0 10.9 103 55-164 153-259 (505)
76 3tsy_A Fusion protein 4-coumar 43.8 72 0.0025 36.6 10.0 99 218-326 74-174 (979)
77 2vsq_A Surfactin synthetase su 40.2 60 0.0021 38.7 8.8 122 55-182 605-731 (1304)
78 3l8c_A D-alanine--poly(phospho 37.3 1E+02 0.0035 32.1 9.3 81 238-321 28-110 (521)
79 4eez_A Alcohol dehydrogenase 1 34.8 1.5E+02 0.0052 28.8 9.6 76 77-155 137-215 (348)
80 3ite_A SIDN siderophore synthe 31.5 2.1E+02 0.0073 30.0 10.7 99 218-321 33-135 (562)
81 1z7w_A Cysteine synthase; tran 30.6 1.8E+02 0.0062 28.1 9.1 64 94-157 58-122 (322)
82 4aec_A Cysteine synthase, mito 30.5 1.7E+02 0.006 29.7 9.1 63 94-156 166-229 (430)
83 3gqw_A Fatty acid AMP ligase; 30.1 1.8E+02 0.0061 30.6 9.8 87 238-327 48-143 (576)
84 2q3b_A Cysteine synthase A; py 29.7 2E+02 0.0069 27.6 9.2 64 93-157 58-122 (313)
85 2egu_A Cysteine synthase; O-ac 28.8 2.1E+02 0.0072 27.4 9.2 64 93-157 56-120 (308)
86 4h1h_A LMO1638 protein; MCCF-l 28.3 76 0.0026 31.0 5.8 61 97-157 8-87 (327)
87 3ist_A Glutamate racemase; str 27.6 1.6E+02 0.0055 27.7 7.8 62 46-114 19-80 (269)
88 2cvi_A 75AA long hypothetical 27.4 1.7E+02 0.0058 21.4 6.5 35 529-564 15-49 (83)
89 3sr3_A Microcin immunity prote 26.8 84 0.0029 30.8 5.8 61 97-157 9-88 (336)
90 2pqm_A Cysteine synthase; OASS 26.5 2E+02 0.0068 28.1 8.6 63 94-157 70-133 (343)
91 3ndn_A O-succinylhomoserine su 25.7 4.9E+02 0.017 25.9 11.7 15 17-31 41-55 (414)
92 2jtq_A Phage shock protein E; 25.7 1.4E+02 0.005 21.8 5.9 46 75-127 22-67 (85)
93 3ju7_A Putative PLP-dependent 24.7 1.6E+02 0.0054 29.2 7.6 59 93-154 70-135 (377)
94 2v03_A Cysteine synthase B; py 24.5 2.8E+02 0.0097 26.4 9.2 63 93-156 52-115 (303)
95 3tla_A MCCF; serine protease, 24.2 98 0.0033 30.9 5.7 61 97-157 39-118 (371)
96 1ve1_A O-acetylserine sulfhydr 23.6 3E+02 0.01 26.2 9.2 64 93-157 51-117 (304)
97 4e5s_A MCCFLIKE protein (BA_56 23.5 1E+02 0.0034 30.2 5.6 61 97-157 8-87 (331)
98 3pc3_A CG1753, isoform A; CBS, 21.8 2.6E+02 0.0088 29.3 8.9 62 94-156 105-167 (527)
99 1h2b_A Alcohol dehydrogenase; 21.8 2.4E+02 0.0081 27.6 8.2 62 92-156 176-239 (359)
100 1y80_A Predicted cobalamin bin 21.1 2.6E+02 0.009 24.8 7.7 57 101-157 88-148 (210)
101 3oon_A Outer membrane protein 21.0 1.9E+02 0.0064 23.2 6.0 78 28-108 19-96 (123)
102 3two_A Mannitol dehydrogenase; 21.0 2.2E+02 0.0076 27.7 7.8 73 77-153 150-225 (348)
103 3s2e_A Zinc-containing alcohol 20.7 2.3E+02 0.0079 27.4 7.8 76 77-156 140-218 (340)
104 2jgn_A DBX, DDX3, ATP-dependen 20.5 3.8E+02 0.013 23.0 8.5 89 85-181 32-123 (185)
105 3jv7_A ADH-A; dehydrogenase, n 20.2 2.3E+02 0.0079 27.5 7.7 58 97-157 168-225 (345)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=5.5e-76 Score=647.95 Aligned_cols=504 Identities=19% Similarity=0.174 Sum_probs=412.3
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006128 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA 120 (660)
..++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006128 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|++|.++.+++.++++.++++++|+++.... ..........+.+..++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999876321 11111111223344444433211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006128 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (660)
.+.++.... ..........++++++|+|||||||.||+|++||+++.+.+......+ ++..++++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345789999999999999999999999999999988877766 788999999999999
Q ss_pred HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006128 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999875 6788999999999876 89999999999999999999999999876432110
Q ss_pred HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006128 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (660)
...++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 011489999999999999999999998999999999999965433322222223
Q ss_pred ccCccCCCccC-eeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006128 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 434 ~~~~~G~~~~~-~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~ 511 (660)
..+++|+|+++ .+++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCCC--CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 4899999 66654 4556899999999999999999999999999 799999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006128 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.+.. . .
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~---------~--------~--- 484 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA---------P--------K--- 484 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC---------C--------C---
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC---------C--------C---
Confidence 9999999996 8999999999999999999999999997654 4788999887421 0 1
Q ss_pred HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHHHhh
Q 006128 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEK 654 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~ 654 (660)
.++|++++++..||.|++|+.|+++ +.+|+|++||++|++|+++|.++|+++|++
T Consensus 485 -----~~~l~~~l~~~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 -----AAELKAFLRERGLAAYKIPDRVEFV------ESFPQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp -----HHHHHHHHHHTTCCGGGSCSEEEEC------SSCCBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhCCCCcccCCCEEEEe------ccCCCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 2344455543359999999999987 446999999999999999999999999973
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.5e-75 Score=646.23 Aligned_cols=517 Identities=20% Similarity=0.226 Sum_probs=395.0
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 006128 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (660)
Q Consensus 32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~ 109 (660)
.++|..+....++.++|+++++++||++|+++. ++ ..+..+++||+||.++++++|++|.+.|+++||+|+++++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 456777777899999999999999999999987 42 1334478999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHH
Q 006128 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (660)
Q Consensus 110 n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 189 (660)
|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876655433221 124455554432
Q ss_pred HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEE
Q 006128 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (660)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (660)
..++.++...............++++++|+|||||||.||+|+++|+++.+.+..+...+ ++..++++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 234556655443222222222348999999999999999999999999999998887777 88999999
Q ss_pred EEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 006128 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (660)
Q Consensus 270 l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (660)
++++|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+........
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------ 292 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------ 292 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc------------
Confidence 999999999998888888999999999876 9999999999999999999999999987653321100
Q ss_pred HHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHh----cC---CceeeecCCCCCC
Q 006128 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC 421 (660)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE~~ 421 (660)
. ..+++|.+++||+++++++.+.+.+. ++ +.+++.||+||++
T Consensus 293 -----------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 293 -----------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp -----------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred -----------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 0 11489999999999999999999887 66 8899999999999
Q ss_pred CceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 006128 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH 496 (660)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~ 496 (660)
.+++..........+++|.|+++++++|+|.+++. +++.|+.|||+|+||+++.||+++++.+.+.| .+| ||+
T Consensus 342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 419 (549)
T 3g7s_A 342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419 (549)
T ss_dssp SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred hhhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence 98877665554556899999999999999944443 45567899999999999999999999999998 678 999
Q ss_pred cCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHH
Q 006128 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYS 573 (660)
Q Consensus 497 TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~ 573 (660)
|||+|++|+||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------ 492 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------ 492 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT------
T ss_pred cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc------
Confidence 9999999999999999999999997 8999999999999999999999999997755 47899999887520
Q ss_pred CCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 574 NGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
... . .++|+++++ .+||.|++|+.|+++++ +|+|++||++|++|++++.+.
T Consensus 493 --~~~------~--------~~~l~~~l~-~~L~~~~~P~~i~~v~~------lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 493 --GKV------D--------EEDIIEWVR-ERISGYKRVREVEFVEE------LPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp --TSC------C--------HHHHHHHHH-TTCC-----CCCCEEEE------CC-------------------
T ss_pred --CcC------C--------HHHHHHHHH-HhccCcccceEEEEecc------CCCCCCcCEeHHHHHHHhhcc
Confidence 000 1 234445554 78999999999998744 589999999999999888653
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.5e-75 Score=640.63 Aligned_cols=521 Identities=26% Similarity=0.313 Sum_probs=422.4
Q ss_pred CCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCC
Q 006128 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (660)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~ 99 (660)
.+..++++...+...| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 4445666554444333 3478999999999999999999875 321 5899999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEe
Q 006128 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (660)
Q Consensus 100 ~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~ 179 (660)
+||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.+..... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987766554332211 12 34444
Q ss_pred cCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccc
Q 006128 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (660)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~ 259 (660)
+... .....+.++..... ...+.....++++++|+|||||||.||+|++||+++++.+........ .
T Consensus 150 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~ 216 (536)
T 3ni2_A 150 DSAP-----------DGCLHFSELTQADE-NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P 216 (536)
T ss_dssp SCCC-----------TTCEETHHHHTSCG-GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred cCCC-----------CCccCHHHHhhccc-cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence 4321 12445666665432 223344567899999999999999999999999999888765433211 0
Q ss_pred cCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 006128 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (660)
Q Consensus 260 ~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~ 337 (660)
...+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 125788999999999999999865 6778999999999876 9999999999999999999999999886421
Q ss_pred chHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecC
Q 006128 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (660)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG 416 (660)
..+..++ ++||.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 290 ------------------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 1111112 4899999999999999999999988 899999999
Q ss_pred CCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 006128 417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (660)
Q Consensus 417 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~ 491 (660)
+||++.+++.+. .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD-PETG-ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe-CCCC-cCCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999998766542 12233458999999999999999 5433 345567899999999999999999999999999 7
Q ss_pred CCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHH
Q 006128 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTK 568 (660)
Q Consensus 492 ~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~ 568 (660)
+|||+|||+|++|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..++.
T Consensus 410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~-- 486 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS-- 486 (536)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--
T ss_pred CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC--
Confidence 999999999999999999999999999998 8999999999999999999999999986544 4789999987643
Q ss_pred HHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006128 569 KWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
.. . .++|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|+++|.+
T Consensus 487 ------~~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 ------QA--------T--------EDEIKQYIS-KQVIFYKRIKRVFFI------EAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ------CC--------C--------HHHHHHHHH-TTSCGGGCCSEEEEC------SCCCBCTTSCBCHHHHHTC---
T ss_pred ------CC--------C--------HHHHHHHHH-HhccCCccccEEEEE------ecCCCCCCCCeeHHHHHHHhcc
Confidence 00 1 134455554 789999999999987 4469999999999999988754
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.6e-74 Score=638.55 Aligned_cols=511 Identities=17% Similarity=0.155 Sum_probs=402.1
Q ss_pred CCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006128 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (660)
Q Consensus 37 ~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~ 116 (660)
.|..++.+.++|+.+|+++||++|+++. +. .+..+++||+||.++++++|++|++.|+++||+|+++++|++++++
T Consensus 51 ~~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~ 126 (580)
T 3etc_A 51 VPENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126 (580)
T ss_dssp CCSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred CcccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 3456788889999999999999999986 43 2345799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchh--hhhhccccccccCc-cEEEEecCCcHHHHHHHhhC
Q 006128 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQT 193 (660)
Q Consensus 117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~ 193 (660)
++|||+++|++++|+++.++.+++..+++.++++++|++.+.. ..+.+.. ...+.+ ..++.++...
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999999999987654 3222211 122222 3344443221
Q ss_pred CcceeeHHHHHhcCccCCccC---CCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEE
Q 006128 194 GIKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYL 270 (660)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l 270 (660)
...+.++.+............ ....++|+++|+|||||||.||+|.++|.+++..+......+ ++..+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 270 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHY 270 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEE
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEE
Confidence 123456666665443222111 246789999999999999999999999999888776655544 788999999
Q ss_pred EecChhHHHHHHH-HHHHhhcCcEEEEec---CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006128 271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (660)
Q Consensus 271 ~~~pl~~~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (660)
+..|+.|..+... ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------- 334 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---------------- 334 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC----------------
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc----------------
Confidence 9999999888775 677799999998874 28999999999999999999999999886420
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006128 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 426 (660)
.... ..++||.+++||+++++++.++|.+.+|+++++.||+||++..++.
T Consensus 335 ----------------------~~~~--------~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 384 (580)
T 3etc_A 335 ----------------------LSHY--------NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT 384 (580)
T ss_dssp ----------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred ----------------------cccC--------CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence 0111 1248999999999999999999999899999999999999877666
Q ss_pred ccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceE
Q 006128 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIG 501 (660)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 501 (660)
.+.. ....+++|+|+++++++|+| +++.. ++.|+.|||+|+| ++++.||+++++.+.+.|.+|||+|||+|
T Consensus 385 ~~~~-~~~~~~~G~p~~~~~v~ivd-~~g~~--~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg 460 (580)
T 3etc_A 385 FPWM-EPKPGSIGKPTPGYKIELMD-RDGRL--CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460 (580)
T ss_dssp CTTS-CCCTTCCBEECTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEE
T ss_pred CCCC-CCCCCccccCCCCCEEEEEC-CCCCC--CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEE
Confidence 5443 33458999999999999999 77654 4556899999997 78999999999999999999999999999
Q ss_pred EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006128 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG 578 (660)
Q Consensus 502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 578 (660)
++|+||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 461 ~~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~----------- 528 (580)
T 3etc_A 461 WMDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT----------- 528 (580)
T ss_dssp EECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-----------
T ss_pred EECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-----------
Confidence 99999999999999999997 6999999999999999999999999997655 48889999887631
Q ss_pred cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006128 579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
.... +.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++++++
T Consensus 529 ------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 ------PSDS----LKNELQDHVK-NVTAPYKYPRIIEFVP------ELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ------CCHH----HHHHHHHHHH-HHSCGGGCCSEEEEEC------C--------------------
T ss_pred ------CCHH----HHHHHHHHHH-hhCCCccCCeEEEEeC------CCCCCCCcCCcHHHHHhHhhc
Confidence 1122 3345555554 6799999999999974 468999999999999998865
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.8e-74 Score=631.02 Aligned_cols=499 Identities=23% Similarity=0.305 Sum_probs=407.8
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006128 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~ 117 (660)
.....|+.++|+++++++|+++|+++. +. .+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 345789999999999999999999876 32 15899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006128 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (660)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 197 (660)
+|||+++|++++|+++.++.+++..++++++++++|++......+..... .......++.....
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------- 148 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA--------------- 148 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------
Confidence 99999999999999999999999999999999999999876654432211 11111111111100
Q ss_pred eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006128 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (660)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (660)
..+.+..... ....+.....++++++|+|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 149 DSLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFH 222 (517)
T ss_dssp HHHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTS
T ss_pred ccHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHH
Confidence 1223333222 122334456789999999999999999999999999999998887777 8899999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006128 278 ILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
.+++...+.++..|+++++.+. ++..+++.|.++++|+++++|+++..|.+.....
T Consensus 223 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------- 279 (517)
T 3r44_A 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA----------------------- 279 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH-----------------------
T ss_pred HHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc-----------------------
Confidence 9999876666559999998876 9999999999999999999999999886532211
Q ss_pred hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-cccc
Q 006128 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMV 435 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~ 435 (660)
....+++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ....
T Consensus 280 ----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 336 (517)
T 3r44_A 280 ----------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKA 336 (517)
T ss_dssp ----------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTT
T ss_pred ----------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccC
Confidence 1112589999999999999999999887 999999999999998776654432 4455
Q ss_pred CccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc
Q 006128 436 GTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK 515 (660)
Q Consensus 436 ~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~ 515 (660)
+++|+|+++++++++| +++...+. + .|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|+||+|+++||.
T Consensus 337 ~~~G~~~~~~~~~i~d-~~~~~~~~--g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~ 412 (517)
T 3r44_A 337 GSAGRATMFTDVAVRG-DDGVIREH--G-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRL 412 (517)
T ss_dssp TCCBEECTTEEEEEEC-TTSCEESS--E-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECG
T ss_pred CCCCcCCCCeEEEEEC-CCCCCCCC--C-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCC
Confidence 8999999999999999 66654333 3 799999999999999999999999999999999999999999999999999
Q ss_pred CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006128 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592 (660)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (660)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|+..... . .
T Consensus 413 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~---------~--------~------- 467 (517)
T 3r44_A 413 KDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE---------V--------S------- 467 (517)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT---------C--------C-------
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC---------C--------C-------
Confidence 999997 8999999999999999999999999987654 3566666433221 0 1
Q ss_pred HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006128 593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i 648 (660)
.++|+++++ ..||.|++|+.|+++ +.+|+|++||++|++|+++|.+++
T Consensus 468 -~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 468 -EQQIVEYCG-TRLARYKLPKKVIFA------EAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp -HHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred -HHHHHHHHH-HhCCCCCCCCEEEEE------CCCCCCCCcCccHHHHHHHHHhhc
Confidence 133444444 679999999999987 446999999999999999997654
No 6
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.1e-74 Score=637.82 Aligned_cols=504 Identities=24% Similarity=0.289 Sum_probs=385.5
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006128 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA 120 (660)
..++.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 21 2237899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006128 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|+++.++.+++.++|+.++++++|++......+.... ...+....++.++.... ....++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999987665443322 22334455666554221 023355
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhh--hhhcccccCCCCCCcEEEEecChhHH
Q 006128 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~pl~~~ 278 (660)
.++...... .....++++++|+|||||||.||+|++||+++....... ...+ ++..+|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555433211 134567899999999999999999999999998766542 2233 67889999999999999
Q ss_pred HHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006128 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 279 ~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 289 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 289 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence 998777888999999999864 89999999999999999999999999876433211
Q ss_pred hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-----
Q 006128 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----- 431 (660)
...++||.+++||+++++++.+.+ +.+|+++++.||+||++.+++......
T Consensus 290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 011489999999999999999999 567999999999999998777654331
Q ss_pred -----ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECC
Q 006128 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (660)
Q Consensus 432 -----~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 505 (660)
....+++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 77776665445789999999999999999999999999 499999999999999
Q ss_pred CCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006128 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (660)
Q Consensus 506 ~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (660)
||+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.... .
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------~------ 488 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK---------P------ 488 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCC---------C------
Confidence 9999999999999996 8999999999999999999999999997654 4788888876211 0
Q ss_pred HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006128 583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i 648 (660)
. .+++++++++..||.|++|+.|++++ .+|+|++||++|++|+++|.+.+
T Consensus 489 --~--------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 489 --T--------PEELNEHLLKAGFAKWQLPDAYVFAE------EIPRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp ----------------------CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred --C--------HHHHHHHHHhccCccccCCcEEEEeC------CCCCCCccCeeHHHHHHHHHHhh
Confidence 1 12334444423899999999999874 46899999999999999876543
No 7
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.2e-74 Score=635.97 Aligned_cols=500 Identities=15% Similarity=0.151 Sum_probs=334.8
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006128 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA 120 (660)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999875 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh----hhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006128 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111111122234445555543211
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006128 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (660)
...+.++...............++++++|+|||||||.||+|+++|+++.+.+......+ ++..++++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222233456789999999999999999999999999999998887777 889999999999999
Q ss_pred HHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006128 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 277 ~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 303 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------- 303 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-------------------
Confidence 9999875 6778999999999876 99999999999999999999999999876432111
Q ss_pred HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCcc
Q 006128 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 433 (660)
.++ ++||.+++||+++++++.+.+.+.+|+++++.||+||++..++........
T Consensus 304 ------------------~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 304 ------------------DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ------------------HHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------ccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 111 489999999999999999999999999999999999998655544433334
Q ss_pred ccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEE
Q 006128 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (660)
Q Consensus 434 ~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~ 511 (660)
...++|.|+ ++++++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYRE--VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 457899996 899999999 76664 4556899999999999999999999999999 799999999999999999999
Q ss_pred EeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006128 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
+||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..+... .
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~-----------------~--- 493 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL-----------------K--- 493 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC-----------------C---
Confidence 9999999996 8999999999999999999999999987654 47888888765320 0
Q ss_pred HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006128 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
.+++++++++..||.|++|+.|+++ +.+|+|++||++|++|++++..
T Consensus 494 -----~~~l~~~~~~~~l~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 494 -----AVVLRRHLMELGIAQYKLPDQIKLI------ESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------
T ss_pred -----HHHHHHHHHhCCCCcccCCcEEEEe------ccCCCCCCCCCcHHHHHHHHhh
Confidence 1233444443379999999999987 4469999999999999998865
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.3e-73 Score=622.54 Aligned_cols=488 Identities=21% Similarity=0.248 Sum_probs=398.0
Q ss_pred CCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006128 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 41 ~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA 120 (660)
|+|+.++|+++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 689999999999999999999864 321 6899999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEecCCCCChhHHHHHHhcccceEEEE--ccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCccee
Q 006128 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (660)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (660)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.... .... ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 665443331111 1111 11
Q ss_pred eHHHHHhcCc----cCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCC--CCCcEEEEe
Q 006128 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (660)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 272 (660)
.+.++..... ..........++++++|+|||||||.||+|++||+++.+.+..+...+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111112345689999999999999999999999999998888776655 56 788999999
Q ss_pred cChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006128 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (660)
Q Consensus 273 ~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
+|++|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999854 6788999999999876 8999999999999999999999999987532100
Q ss_pred HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006128 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
.... ..++||.+++||+++++++.+.+++.++..+++.||+||++. +....
T Consensus 266 ------------------~~~~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSL--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp ------------------TCCC--------CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred ------------------cccc--------cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 0000 114899999999999999999999999999999999999943 22222
Q ss_pred CccccCccCCCccCeeEEeeecCCC-CCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEECCCCc
Q 006128 431 EMCMVGTAGPVSVYSELRLEEVPEM-GYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGV 508 (660)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~ivd~~~~-~~~~~~~~~~Gei~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~ 508 (660)
....+++|.|.+++++++++ +++ ...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~ 394 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGT 394 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCce
Confidence 22347899999999999999 544 2245566789999999 9999999999999999999999999999999999999
Q ss_pred EEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhc
Q 006128 509 VKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCS 585 (660)
Q Consensus 509 l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (660)
|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. +
T Consensus 395 l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~--------~~--------~ 457 (504)
T 1t5h_X 395 VRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE--------TL--------S 457 (504)
T ss_dssp EEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC--------CC--------C
T ss_pred EEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc--------Cc--------C
Confidence 9999999999997 8999999999999999999999999997654 4899999987652 00 1
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHH
Q 006128 586 LVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQ 645 (660)
Q Consensus 586 ~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~ 645 (660)
.++|++++++.+||.|++|+.|++++ .+|+|++||++|++|+++|+
T Consensus 458 --------~~~l~~~~~~~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 --------ADALDTFCRSSELADFKRPKRYFILD------QLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp --------HHHHHHHHHTSSCCGGGSCSEEEECS------CCCBCTTSCBCHHHHHHHHC
T ss_pred --------HHHHHHHHhhccCcccccceEEEEhh------hCCCCCCCCEeHHHHHHHhc
Confidence 23455555533899999999999974 46999999999999998874
No 9
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.6e-74 Score=636.53 Aligned_cols=524 Identities=24% Similarity=0.274 Sum_probs=336.3
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006128 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (660)
Q Consensus 32 ~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~ 111 (660)
++.|..+....|+.++|.++++++|+++|++... ++.+ .+++||+||.++++++|++|++.|+++||+|+++++|+
T Consensus 10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 4446666777999999999999999999986220 2111 16899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006128 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (660)
Q Consensus 112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 191 (660)
+++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++....
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 157 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD------- 157 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence 9999999999999999999999999999999999999999999998776554432 23344556666554321
Q ss_pred hCCcceeeHHHHHhcCccC------CccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCC
Q 006128 192 QTGIKPYSWDEFLHLGKVN------EMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (660)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (660)
.....++.++....... ..+.....++++++|+|||||||.||+|++||+++...+......+ ...++..
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~ 233 (550)
T 3rix_A 158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 233 (550)
T ss_dssp --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence 11234455555432211 1112223468899999999999999999999999988877655431 1126778
Q ss_pred CcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 006128 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (660)
Q Consensus 266 ~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 344 (660)
++++++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------- 299 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-------------- 299 (550)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC--------------
T ss_pred CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc--------------
Confidence 9999999999999999888888999999999876 9999999999999999999999999886521
Q ss_pred HHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCc-eeeecCCCCCCCc
Q 006128 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP 423 (660)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~ 423 (660)
..+..++ ++||.+++||+++++++.+.+.+.++.. +++.||+||+++.
T Consensus 300 -----------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 348 (550)
T 3rix_A 300 -----------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348 (550)
T ss_dssp -----------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred -----------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence 1111122 4899999999999999999999999875 9999999999988
Q ss_pred eecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEE
Q 006128 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (660)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~ 502 (660)
++....... ..+++|+|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|+
T Consensus 349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 425 (550)
T 3rix_A 349 ILITPEGDD-KPGAVGKVVPFFEAKVVD-LDTG-KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425 (550)
T ss_dssp EEECCTTCC-CTTEEEEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred eecCCCCCC-CCCCcccccCCcEEEEEe-CCCC-cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence 777665443 448999999999999999 5433 455667899999999999999999999999999 899999999999
Q ss_pred ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006128 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (660)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (660)
+|+||+++++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .
T Consensus 426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------~--- 493 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--------M--- 493 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC--------C---
Confidence 9999999999999999997 8999999999999999999999999987654 47888888876531 0
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006128 580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 651 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~ 651 (660)
. .++|+++++ .+++.|..|. .|+++ +.+|+|++||++|++|++++.+..+.-
T Consensus 494 -----~--------~~~l~~~~~-~~l~~~~~~~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~~~~~ 546 (550)
T 3rix_A 494 -----T--------EKEIVDYVA-SQVTTAKKLRGGVVFV------DEVPKGLTGKLDARKIREILIKAKKGG 546 (550)
T ss_dssp -------------------------------------------------------------------------
T ss_pred -----C--------HHHHHHHHH-HhcccccccCCceEEE------eecCCCCCcceeHHHHHHHHHhhcccc
Confidence 1 123344443 5677776554 57765 456999999999999999998765543
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.8e-73 Score=627.31 Aligned_cols=510 Identities=24% Similarity=0.282 Sum_probs=411.7
Q ss_pred CCcHHH-HHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 41 LNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 41 ~~ti~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
+.++.+ +|..+++++ |++|+++. ++. +++||+||.++++++|..|++.|+++||+|+++++|++++++++|
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 95 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVI 95 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred cCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Confidence 468999 899999999 99999863 211 589999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+....++.++.... ......
T Consensus 96 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~ 165 (548)
T 2d1s_A 96 AGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILDSKVD---------YRGYQC 165 (548)
T ss_dssp HHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETTCSSC---------BTTBCB
T ss_pred HHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeCCccc---------cccccc
Confidence 99999999999999999999999999999999999988765543321 11222334555443210 001234
Q ss_pred HHHHHhcCccCCccCCCC------CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEec
Q 006128 200 WDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (660)
|.++.........+.... .++++++|+|||||||.||+|++||+++.+.+......+. ..++..++++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~ 243 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVV 243 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECS
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEec
Confidence 556554331110111111 2389999999999999999999999999988877655410 12678899999999
Q ss_pred ChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 006128 274 PLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKY 351 (660)
Q Consensus 274 pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (660)
|++|.+++.. .+.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+..
T Consensus 244 p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------- 301 (548)
T 2d1s_A 244 PFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE--------------------- 301 (548)
T ss_dssp CTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS---------------------
T ss_pred cHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc---------------------
Confidence 9999999876 45556 9999998875 9999999999999999999999999886421
Q ss_pred HHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCC
Q 006128 352 KLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
..+..++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..++.....
T Consensus 302 ----------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 357 (548)
T 2d1s_A 302 ----------------LLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG 357 (548)
T ss_dssp ----------------CGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT
T ss_pred ----------------ccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc
Confidence 0111111 4899999999999999999999988 68899999999999877664433
Q ss_pred CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcE
Q 006128 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVV 509 (660)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l 509 (660)
....+++|+|+++++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||++
T Consensus 358 -~~~~~~~G~~~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l 434 (548)
T 2d1s_A 358 -DDKPGASGKVVPLFKAKVID-LDTK-KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHF 434 (548)
T ss_dssp -CCCTTCCBEECTTCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCE
T ss_pred -cCCCCCCCccCCCceEEEEe-CCcC-ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeE
Confidence 23458999999999999999 4333 345567899999999999999999999999999 7999999999999999999
Q ss_pred EEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhcc
Q 006128 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSL 586 (660)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (660)
+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. +
T Consensus 435 ~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~--------~~--------~- 496 (548)
T 2d1s_A 435 FIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK--------NM--------T- 496 (548)
T ss_dssp EEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C-
T ss_pred EEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC--------CC--------C-
Confidence 999999999997 8999999999999999999999999997654 4788999987642 00 1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCCCCCCCccccccccchHHHHHHHHHHHHHH
Q 006128 587 VQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQL 651 (660)
Q Consensus 587 ~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~ 651 (660)
.++|+++++ .+|+.|++|+ .|.++ +.+|+|++||++|++|+++|.+.|++|
T Consensus 497 -------~~~l~~~~~-~~l~~~~~p~~~i~~v------~~lP~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 497 -------EKEVMDYVA-SQVSNAKRLRGGVRFV------DEVPKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp -------HHHHHHHHH-TTSCGGGSCTTCEEEC------SSCCBCTTSCBCHHHHHHHHHSCC---
T ss_pred -------HHHHHHHHH-HhccccccccccEEEc------cCCCCCCcchhHHHHHHHHHhhhhhcC
Confidence 134445554 7899999999 88887 446999999999999999999888765
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.2e-73 Score=626.67 Aligned_cols=525 Identities=18% Similarity=0.200 Sum_probs=421.3
Q ss_pred CceeccccCCCCCCCCCCCCcHHHHHHHHHHh-----CCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-
Q 006128 23 PVYRNLLASNGFPSVDSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS- 96 (660)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~- 96 (660)
..+++.+..++.-..|..++++.++|++++++ +||++|+++. +. .+..+++||+||.++++++|++|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~ 94 (570)
T 3c5e_A 19 LYFQSMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGAC 94 (570)
T ss_dssp --------CCCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTT
T ss_pred eeeeecccccccccCCccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHcc
Confidence 34455555555445566788899999999999 9999999986 42 22347899999999999999999998
Q ss_pred CCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEE
Q 006128 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVM 176 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i 176 (660)
|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.... ...+.+..+
T Consensus 95 Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~ 173 (570)
T 3c5e_A 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIK 173 (570)
T ss_dssp CCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEE
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999987765543322 123444455
Q ss_pred EEecCCcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHH-Hhhhhhhh
Q 006128 177 VCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT-FVSGVDLF 255 (660)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~-~~~~~~~~ 255 (660)
+.++.... .....+.++...... ........++++++|+|||||||.||+|+++|+.+.. ..... ..
T Consensus 174 ~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~ 241 (570)
T 3c5e_A 174 LLVSEKSC----------DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GW 241 (570)
T ss_dssp EEESSSCC----------TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TT
T ss_pred EEecccCc----------cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hh
Confidence 55553211 123456666544322 1222345789999999999999999999999994332 33332 33
Q ss_pred cccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEec---CChhhHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006128 256 LDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (660)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 331 (660)
+ ++..+|++++.+|++|.+++.. .+.++..|+++++.+ .++..+++.|+++++|+++++|+++..|.+..
T Consensus 242 ~-----~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~- 315 (570)
T 3c5e_A 242 T-----GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD- 315 (570)
T ss_dssp T-----SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-
T ss_pred c-----CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-
Confidence 4 7889999999999999999874 678899999999886 38999999999999999999999999886420
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCce
Q 006128 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFL 411 (660)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v 411 (660)
.... ..++||.+++||+++++++.+.|.+.+|+++
T Consensus 316 -------------------------------------~~~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i 350 (570)
T 3c5e_A 316 -------------------------------------LSSY--------KFPHLQNCVTVGESLLPETLENWRAQTGLDI 350 (570)
T ss_dssp -------------------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHHSCCC
T ss_pred -------------------------------------cccc--------ccccceEEEEcCCcCCHHHHHHHHHHhCCch
Confidence 0000 1148999999999999999999999889999
Q ss_pred eeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhh
Q 006128 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLT 486 (660)
Q Consensus 412 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~-----g~~~~~gy~~~~~~~ 486 (660)
++.||+||++..++..... ....+++|+|+++++++|+| +++.. ++.|+.|||+|+ |++++.||+++++.+
T Consensus 351 ~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~--~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t 426 (570)
T 3c5e_A 351 RESYGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIID-DKGNV--LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKT 426 (570)
T ss_dssp EEEEEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEEC-TTSCB--CCTTCCEEEEEECSSBCCTTCCCEETTCHHHH
T ss_pred hhccchhhcccceecCccc-ccCCCcccccCCCceEEEEC-CCCCC--CCCCCCCeeEEeccCCCCchhhccccCChhHh
Confidence 9999999999766554332 33458999999999999999 77654 455689999999 999999999999999
Q ss_pred hhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcC
Q 006128 487 RESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPC 563 (660)
Q Consensus 487 ~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~ 563 (660)
.+.|.+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.
T Consensus 427 ~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~ 505 (570)
T 3c5e_A 427 AANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLA 505 (570)
T ss_dssp HHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred hhhhcCCccccceeEEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEEC
Confidence 99999999999999999999999999999999997 8999999999999999999999999997654 4788999987
Q ss_pred hhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006128 564 EEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 643 (660)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 643 (660)
++.. . .. .+.+.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|+++
T Consensus 506 ~~~~---------~-------~~---~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 506 SQFL---------S-------HD---PEQLTKELQQHVK-SVTAPYKYPRKIEFVL------NLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp GGGT---------T-------SC---HHHHHHHHHHHHH-HHSCGGGSCSEEEEES------CCCBCTTCCBCHHHHHHH
T ss_pred Cccc---------C-------cc---hHHHHHHHHHHHH-hhCccccCCcEEEEec------cCCCCCCcCCcHHHHHHH
Confidence 7530 0 00 1223455666665 6799999999999974 458999999999999988
Q ss_pred HHH
Q 006128 644 YQV 646 (660)
Q Consensus 644 ~~~ 646 (660)
+.+
T Consensus 560 ~~~ 562 (570)
T 3c5e_A 560 EWK 562 (570)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.5e-73 Score=639.40 Aligned_cols=523 Identities=16% Similarity=0.180 Sum_probs=419.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999999999986 3333455899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhh---------hhhcccccc-ccCccEEEEecCCcHHHHHH
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 189 (660)
||+++|++++|+++.++.+++..+|++++++++|+++.... .+.+..... ...+..+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999876432 111111100 01345566655321000
Q ss_pred HhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhh-hhhhhcccccCCCCCCcE
Q 006128 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (660)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~ 268 (660)
........+|.++..... .........++++++|+|||||||.||||+++|++++..+. .+...+ ++..+|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKAS-PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSC-SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcC-CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 000112356777765432 12233445689999999999999999999999999887664 334445 7889999
Q ss_pred EEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 006128 269 YLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (660)
Q Consensus 269 ~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~ 342 (660)
+++.+|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 999999999999854 7888999999999863 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCC
Q 006128 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (660)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE 419 (660)
.....+ +++||.+++||+++++++.+++.+.+| +++++.||+||
T Consensus 371 -------------------------~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccCC--------cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 001111 259999999999999999999999888 89999999999
Q ss_pred CCCceecccCC-CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 006128 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (660)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~g 493 (660)
+++.++....+ .....+++|+|++|++++|+| +++..+ +.|+.|||+|+| |+++.||+++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v--~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc--CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99877665433 234558999999999999999 776644 446789999999 799999999999887776 389
Q ss_pred ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHH
Q 006128 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKW 570 (660)
Q Consensus 494 ~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~ 570 (660)
||+|||+|++|+||+|+++||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++..
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~--- 570 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE--- 570 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC---
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC---
Confidence 9999999999999999999999999998 7999999999999999999999999997654 47999999987530
Q ss_pred HHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006128 571 AYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 650 (660)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~ 650 (660)
...+ +.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++.+.++++.
T Consensus 571 --------------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 571 --------------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTD------SLPKTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp --------------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECS------CCCBCTTSCBCHHHHHHHHHTC---
T ss_pred --------------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCCccchHHHHHHHHhCCCCC
Confidence 1122 2345555554 6799999999999874 4689999999999999999876544
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-73 Score=623.74 Aligned_cols=491 Identities=23% Similarity=0.297 Sum_probs=400.5
Q ss_pred HHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCC
Q 006128 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (660)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G 125 (660)
++|++.++++|+++++... +..+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 2111 589999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 006128 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (660)
Q Consensus 126 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (660)
++++|+++.++.+++.+++++++++++|++......+....... . ..+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987654432221111 1 12333332110 01111111
Q ss_pred cCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHH-H
Q 006128 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (660)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~ 284 (660)
.. ..........++++++|+|||||||.||+|+++|+++.+.+......+ ++..++++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122233456789999999999999999999999999999998887777 8899999999999999998765 6
Q ss_pred HHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCC
Q 006128 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (660)
Q Consensus 285 l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (660)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677899999988876 9999999998 89999999999998864211
Q ss_pred CcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCcc
Q 006128 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (660)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (660)
.... ..+++|.+++||+++++++.+.|.+.+|+.+++.||+||++..++... ......+++|+|++
T Consensus 262 -----~~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKE--------TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTT--------TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cccc--------chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 0111 114899999999999999999999999999999999999987755333 33444589999999
Q ss_pred CeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcC
Q 006128 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (660)
Q Consensus 444 ~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~ 522 (660)
+++++|+| ++.+ .+++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||.++++||.||+||+
T Consensus 328 ~~~~~i~d-~~~g-~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PETG-KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTTC-CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCCC-CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999999 4433 345667899999999999999999999999999 6999999999999999999999999999997
Q ss_pred CCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006128 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (660)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 599 (660)
+|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. .. + .+++++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~--------~~--------~--------~~~l~~ 460 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA--------TI--------D--------EAQVLH 460 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC--------CC--------C--------HHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC--------CC--------C--------HHHHHH
Confidence 7999999999999999999999999986654 4788999987753 00 1 123444
Q ss_pred HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHH
Q 006128 600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
+++ ..||.|++|+.|++++ .+|+|++||++|++|+++|++
T Consensus 461 ~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 461 GLD-GQLAKFKMPKKVIFVD------DLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp HHB-TTBCGGGCCSEEEEES------CCCBCTTSCBCHHHHHHHTTT
T ss_pred HHH-hhcccCCCCCEEEEEC------CCCCCcccceeHHHHHHHHHH
Confidence 444 7899999999999974 469999999999999998854
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=9.3e-73 Score=634.87 Aligned_cols=533 Identities=18% Similarity=0.187 Sum_probs=416.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~-~~Gl~~gd~V~l~~~n~~e~~~~~ 118 (660)
..|++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ +.|+++||+|+++++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 3588999999999999999999986 333344589999999999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh--------hhccccccccCccEEEEecCCcHHHHHHH
Q 006128 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE--------LLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (660)
Q Consensus 119 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 190 (660)
|||+++|++++|+++.++.+++..+|++++++++|+++..... .........+.+..+++++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 9999999999999999999999999999999999998765321 1111111223455666655321000 0
Q ss_pred hhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhh-hhhhcccccCCCCCCcEE
Q 006128 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (660)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (660)
........+|.++..... ...+..+..++++++|+|||||||.||||+++|++++..+.. ....+ ++..+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765432 222334557899999999999999999999999998776643 33344 78899999
Q ss_pred EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006128 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (660)
Q Consensus 270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (660)
++..|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------ 375 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------ 375 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence 99999999999854 7788999999999863 78999999999999999999999988753210
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC---CceeeecCCCCC
Q 006128 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~ 420 (660)
...+..+ +++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 376 -----------------------~~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 376 -----------------------SYIENHS--------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp -----------------------TSSSSCC--------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred -----------------------cccccCC--------cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 0001111 258999999999999999999999887 899999999999
Q ss_pred CCceecccC--CCccccCccCCCccCeeEEeeecC-CCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 006128 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (660)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g--~~~~~gy~~~~~~~~~~~---~~ 492 (660)
++.++.... .....++++|.|++|++++|+| + ++..++. .|+.|||+|+| |+++.|||++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 987666543 2234568999999999999999 6 5543322 26789999999 589999999999888876 38
Q ss_pred CccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHH
Q 006128 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKK 569 (660)
Q Consensus 493 g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~ 569 (660)
|||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++....
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 99999999999999999999999999997 7999999999999999999999999998754 4899999998753100
Q ss_pred HHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHH
Q 006128 570 WAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEID 649 (660)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~ 649 (660)
.. .+. ..+.+.++|+++++ ..|+.|++|+.|++++ .+|+|++||++|++|++++.++++
T Consensus 582 -----~~--------~~~-~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 582 -----TA--------TDD-ELQDIKKHLVFTVR-KDIGPFAAPKLIILVD------DLPKTRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp --------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECS------CCCBCTTSCBCHHHHHHSCC----
T ss_pred -----cc--------cch-hHHHHHHHHHHHHH-HhCCCCcCCeEEEEcC------CCCCCCccCchHHHHHHHHcCCCC
Confidence 00 000 00023455555655 6799999999999874 468999999999999999977654
Q ss_pred HH
Q 006128 650 QL 651 (660)
Q Consensus 650 ~~ 651 (660)
.+
T Consensus 641 ~~ 642 (663)
T 1ry2_A 641 QL 642 (663)
T ss_dssp --
T ss_pred CC
Confidence 43
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.7e-73 Score=621.92 Aligned_cols=492 Identities=22% Similarity=0.271 Sum_probs=326.1
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|+++.++.+++.++++.++++++|++......+.... ........++.+++.. ..
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGS--------------GP 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCC--------------SS
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCC--------------cC
Confidence 99999999999999999999999999999999999988766533332 2334555666655421 11
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006128 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (660)
+.++...............++++++|+|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222121223334456789999999999999999999999999999998887777 889999999999999999
Q ss_pred HHHHHHHHhhc-CcEEEEecCChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 006128 280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (660)
Q Consensus 280 g~~~~l~~l~~-G~~~v~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (660)
++...+.++.. |+++++...++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99887665544 44444444499999999999999999999999999875320
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCCccccCc
Q 006128 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 437 (660)
..++ +++|.++.+|++ +..+.+.+.+ ++.+++.||+||++++++....... ..+
T Consensus 268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0011 489999999987 7888888888 8999999999999987776554322 246
Q ss_pred cCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEecc--
Q 006128 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (660)
Q Consensus 438 ~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~-- 515 (660)
+|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++|+||++++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 7665 445668999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHH
Q 006128 516 KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNY 592 (660)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (660)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. . .
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~--------~--------~------- 455 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES--------I--------A------- 455 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC--------C--------C-------
Confidence 999996 8999999999999999999999999987754 37888888876531 0 0
Q ss_pred HHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 593 ILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 593 ~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.++|+++++ ..||.|++|+.|+++ +.+|+|++||++|++|++++++.
T Consensus 456 -~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 456 -ADALAEFVA-SLIARYKKPKHVVFV------EALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------------------
T ss_pred -HHHHHHHHH-hhCcccCCCcEEEEe------cCCCCCCCCCccHHHHHHHHhhc
Confidence 123444444 789999999999987 44689999999999999988664
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=5e-72 Score=612.96 Aligned_cols=487 Identities=18% Similarity=0.204 Sum_probs=406.4
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006128 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (660)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~-Gl~~gd~V~l~~~n~~e~~~~~lA 120 (660)
+|+.+.|+++|+++||++|+++. + +++||+||.++++++|++|.+. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999875 3 6899999999999999999885 889999999999999999999999
Q ss_pred HHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeH
Q 006128 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (660)
Q Consensus 121 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
|+++|++++|+++.++.+++.++++.++++++|++.......... .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----------------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQ----------------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCC----------------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccc----------------------------ccceecH
Confidence 999999999999999999999999999999999976532211100 0112345
Q ss_pred HHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006128 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (660)
.++...............++++++|+|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433333333445789999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006128 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999998864 78999999999999999999999988754210
Q ss_pred hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006128 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 431 (660)
... ...+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------ccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 000 1124899999999999999999999988 899999999999998776544322
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEECCCC
Q 006128 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~G 507 (660)
.....++|.|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12336799999999999999 7765 44566899999999999999999999999998 344 8999999999 599
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006128 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~----------~------ 452 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF----------E------ 452 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC----------S------
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc----------c------
Confidence 99999999999997 8999999999999999999999999986644 48899999887530 0
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.. ..+.++|+++++ .+||.|++|+.++++ +.+|+|++||++|++|++++...
T Consensus 453 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~v------~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 453 KE----FQLTSAIKKELA-ASLPAYMIPRKFIYQ------DHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp SH----HHHHHHHHHHHH-HHSCGGGSCSEEEEC------SCCCBCTTSCBCHHHHHHHHHHH
T ss_pred ch----hhHHHHHHHHHH-hhCchhhCCeeEEEe------ccCCCCCCcCccHHHHHhHHhhh
Confidence 11 123345555554 679999999999987 44699999999999999988653
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.2e-72 Score=616.29 Aligned_cols=488 Identities=19% Similarity=0.198 Sum_probs=400.6
Q ss_pred CcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006128 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (660)
Q Consensus 42 ~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~ 121 (660)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999876 3 58999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 006128 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (660)
Q Consensus 122 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (660)
+++|++++|+++.++.+++.++++.++++++|++........ . ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------P-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------S-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------c-cceechh------------------hhh
Confidence 999999999999999999999999999999999754321110 0 0111110 111
Q ss_pred HHHhc-CccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHH
Q 006128 202 EFLHL-GKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (660)
Q Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (660)
.+... ......+.....++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++++|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 11111 11122233456789999999999999999999999999999998877777 8899999999999999999
Q ss_pred HHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006128 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
+...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 88999999999999999999999988753210
Q ss_pred hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC----
Q 006128 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 431 (660)
.... .++++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 255 ------------~~~~--------~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSES--------MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTT--------TSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccch--------hCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 0111 124899999999999999999999988 899999999999998877554332
Q ss_pred ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEECCCC
Q 006128 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (660)
Q Consensus 432 ~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~G 507 (660)
.....++|.|+++++++++| +++.. ++.|+.|||+|+||+++.||+++++.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTI--APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCB--CCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCCC--CCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346899999999999999 76654 44568999999999999999999999999983 459999999999 799
Q ss_pred cEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHh
Q 006128 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELC 584 (660)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++. ..
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~----------~~------ 453 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS----------FE------ 453 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC----------CS------
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc----------cc------
Confidence 99999999999997 8999999999999999999999999986544 3788999887642 00
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 585 SLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 585 ~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.. ..+.++|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|++.|.++
T Consensus 454 ~~----~~~~~~l~~~l~-~~L~~~~~P~~~~~~------~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 454 KE----FKLTSAIKKELN-ERLPNYMIPRKFMYQ------SSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp SH----HHHHHHHHHHHH-TTSCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHC-
T ss_pred ch----hhhHHHHHHHHH-hhCchhcCCeEEEEe------cccCCCCCcChHHHHHHhhhhhc
Confidence 11 123345666665 789999999999986 45699999999999999988653
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-71 Score=612.13 Aligned_cols=504 Identities=21% Similarity=0.217 Sum_probs=397.8
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006128 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (660)
Q Consensus 36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~ 115 (660)
..|..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus 18 ~~p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 18 APPALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP 87 (529)
T ss_dssp ----CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH
T ss_pred cCccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Confidence 345677889999999999 9999999864 3 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCc-cEEEEecCCcHHHHHHHhhCC
Q 006128 116 EAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (660)
Q Consensus 116 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 194 (660)
+++|||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+.... ..
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~ 158 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EP 158 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC-------------
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------cc
Confidence 9999999999999999999999999999999999999999876654432211 11122 33444333210 00
Q ss_pred cceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhH-HHHhhhhhhhcccccCCCCCCcEEEEec
Q 006128 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFL 273 (660)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (660)
.....+.++..... .........++++++++|||||||.||+|++||+++ .+........+ ++..++++++.+
T Consensus 159 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~ 232 (529)
T 2v7b_A 159 RLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAA 232 (529)
T ss_dssp -CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESS
T ss_pred ccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEee
Confidence 01124555554321 122233457899999999999999999999999999 56655544444 788999999999
Q ss_pred ChhHHHHHHH-HHHHhhcCcEEEEec-C-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 006128 274 PLAHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (660)
Q Consensus 274 pl~~~~g~~~-~l~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (660)
|++|.+++.. .+.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++...
T Consensus 233 p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------- 293 (529)
T 2v7b_A 233 KLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN------------------- 293 (529)
T ss_dssp CTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-------------------
T ss_pred cHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-------------------
Confidence 9999999876 567899999999873 3 89999999999999999999999988754210
Q ss_pred HHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCC
Q 006128 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
.+.. ...++|.+++||+++++++.+.+.+.+|+++++.||+||++.+++.....
T Consensus 294 ---------------~~~~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~ 347 (529)
T 2v7b_A 294 ---------------LPAR-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAG 347 (529)
T ss_dssp ---------------CCCG-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTT
T ss_pred ---------------cccc-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccC
Confidence 0000 00379999999999999999999998999999999999998766655443
Q ss_pred CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEE
Q 006128 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVK 510 (660)
Q Consensus 431 ~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~ 510 (660)
. ...+++|.|+++++++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++++||+|+
T Consensus 348 ~-~~~~~~G~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~ 423 (529)
T 2v7b_A 348 A-VEYGTTGRPVPGYEIELRD-EAGHA--VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYV 423 (529)
T ss_dssp C-CCTTSCCEECTTCEEEEEC-TTSCB--CCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEE
T ss_pred C-CccCCcccCCCCCEEEEEC-CCCCC--CCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEE
Confidence 3 3448999999999999999 77654 445689999999999999999999999999999999999999999999999
Q ss_pred EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC--CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006128 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL--KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
+.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++... .+.++|+|++.++.. ....
T Consensus 424 ~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~-----------------~~~~ 485 (529)
T 2v7b_A 424 YAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFA-----------------PSEI 485 (529)
T ss_dssp EEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHH
T ss_pred EeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCC-----------------cchh
Confidence 99999999997 899999999999999999999999999732 247889999876420 0111
Q ss_pred HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006128 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
+.++|+++++ ..||.|++|+.|++++ .+|+|++||++|++|++
T Consensus 486 ----~~~~l~~~l~-~~L~~~~~P~~i~~v~------~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 486 ----LAEELKAFVK-DRLAPHKYPRDIVFVD------DLPKTATGKIQRFKLRE 528 (529)
T ss_dssp ----HHHHHHHHHH-TTSCTTTSCSEEEEES------CCCBCTTSCBCHHHHHC
T ss_pred ----HHHHHHHHHH-hhcchhhCCeEEEEec------cCCCCCccchhHHhHhh
Confidence 2235556665 7899999999999974 45899999999999985
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.1e-72 Score=623.69 Aligned_cols=479 Identities=20% Similarity=0.185 Sum_probs=317.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006128 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~ 117 (660)
++...++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345679999999999999999999875 3 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006128 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (660)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 197 (660)
+|||+++|++++|+++.++.+++.+++++++++++|++......+. ....++..+...
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~-------------- 199 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT--------GTTTLYVEDEAA-------------- 199 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC--------SSEEEECCC-----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc--------CCcceeeecccc--------------
Confidence 9999999999999999999999999999999999999876544321 111221111100
Q ss_pred eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006128 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (660)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (660)
.............++++++|+|||||||.||+|++||+++.+.+.. ...+ ++..++++++++|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccH
Confidence 0001122233457899999999999999999999999999877655 2233 6788999999999998
Q ss_pred HHHHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006128 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (660)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
..+...++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------- 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------- 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence 7776677888999999999863 889999999999999999999999988653110
Q ss_pred HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC--
Q 006128 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-- 431 (660)
. .++||.+++||+++++.+.+.+.+.+ ++.++++||+||++++++......
T Consensus 324 ------------------~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 324 ------------------A--------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp ------------------G--------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred ------------------h--------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 0 14899999999999999999888877 789999999999998776554322
Q ss_pred -ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceE
Q 006128 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIG 501 (660)
Q Consensus 432 -~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDl~ 501 (660)
.....++|+|+++++++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~~--~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLKP--AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCCC--CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 22335799999999999999 76654 4556899999999999999999999999998 33 699999999
Q ss_pred EECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCC
Q 006128 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAG 578 (660)
Q Consensus 502 ~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 578 (660)
++|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+..++...
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~---------- 523 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAP---------- 523 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCC----------
Confidence 99999999999999999997 8999999999999999999999999997654 478888887653210
Q ss_pred cHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006128 579 SFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 643 (660)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 643 (660)
...++|+++++ .+||.|++|+.++++ +.+|+|++||++|++|++.
T Consensus 524 -------------~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 524 -------------PDAAELRRHVA-EALPAYMVPVECVPV------DELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred -------------cCHHHHHHHHH-hhCccccCCcEEEEc------ccCCCCCCcCcchHhhhcc
Confidence 01234444554 679999999999886 4469999999999999864
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.6e-71 Score=620.33 Aligned_cols=502 Identities=18% Similarity=0.177 Sum_probs=413.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
...++.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999888 999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhh----hhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKE----LLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 195 (660)
||+++|++++|+++.++.+++..+++.+++++++++...... ..............+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 999999999999999999999999999999999998765411 11111112233444444443221
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006128 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (660)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 275 (660)
..+.+..... .......+..++++++|+|||||||.||+|+++|+++.+.+......+ ++..++++++++|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 122233455789999999999999999999999999999998887777 88999999999999
Q ss_pred hHHHHHHH--HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006128 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (660)
Q Consensus 276 ~~~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
+|.+++.. .+.++..|+++++.+. ++..++..++++++|+++++|+++..+.+........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999875 6788999999999876 8999999999999999999999999887643321000
Q ss_pred HHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCc
Q 006128 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~ 432 (660)
...+++|.+++||+++++++.+.+.+.+|+.+++.||+||++..++.......
T Consensus 299 ---------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 ---------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp ---------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred ---------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 01148999999999999999999999999999999999999866554433333
Q ss_pred cccCccCCCc-cCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEE
Q 006128 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (660)
Q Consensus 433 ~~~~~~G~~~-~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~ 510 (660)
....++|.|+ ++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+.+.| .++||+|||+|++++||.|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3346889887 788999999 7665 44556899999999999999999999999999 79999999999999999999
Q ss_pred EEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccH
Q 006128 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLV 587 (660)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (660)
++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+++..+.. ..
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~~- 488 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------RA- 488 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH-
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------CH-
Confidence 99999999997 7999999999999999999999999986543 4788998887632 11
Q ss_pred HHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006128 588 QLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 650 (660)
Q Consensus 588 ~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~ 650 (660)
.++++++++..||.|++|..++++ +.+|+|++||++|++|++.+......
T Consensus 489 -------~~l~~~l~~~~lp~~~vP~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 489 -------VQVRRFLREQGIAEFKLPDRVECV------DSLPLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp -------HHHHHHHHTTTCCGGGSCSEEEEC------SCCCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhCCCccccCCcEEEEe------cccCCCCCCCCcHHHHHHHHhccccc
Confidence 234444443479999999999987 45699999999999999998776544
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=9.8e-72 Score=621.19 Aligned_cols=476 Identities=18% Similarity=0.141 Sum_probs=386.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
...|+.+.|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3579999999999999999999976 3 589999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|++|.++.+++.++++++++++++++........ ....+ .
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--------~~~~~-~--------------------- 145 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--------GLPCV-P--------------------- 145 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--------TSCEE-E---------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--------CCcee-e---------------------
Confidence 99999999999999999999999999999999997655332111 00000 0
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006128 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (660)
+.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+ ++..++++++.+|++|..
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00000 001112223346899999999999999999999999999887765 3334 788999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEecC---ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 006128 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (660)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (660)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 98888999999999998752 89999999999999999999999998864210
Q ss_pred hhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC---c
Q 006128 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---~ 432 (660)
. ..++||.+++||++++++..+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 273 ---------------~--------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 273 ---------------D--------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp ---------------G--------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred ---------------h--------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 0 014899999999999998888776665 889999999999998776543322 2
Q ss_pred cccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEEC
Q 006128 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (660)
Q Consensus 433 ~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~ 504 (660)
....++|+|+++++++|+| +++.. .++.|+.|||+|+|++++.||+++++.+.+.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 3346899999999999999 66553 3456789999999999999999999999999943 799999999999
Q ss_pred CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCCC--eEEEEEEcChhhHHHHHHHCCCCCcHHH
Q 006128 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLKS--MLVAVVVPCEEDTKKWAYSNGHAGSFLE 582 (660)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~~--~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 582 (660)
+||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++.. .++++++...+. +
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~-- 471 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S-- 471 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C--
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H--
Confidence 99999999999999998 79999999999999999999999999866543 555555543321 0
Q ss_pred HhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHHHHH
Q 006128 583 LCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEIDQ 650 (660)
Q Consensus 583 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~ 650 (660)
.+.+ ...||.|++|+.++++ +.+|+|++||++|++|+++|.+.++.
T Consensus 472 -----------~~~l-----~~~Lp~y~~P~~~~~v------~~lP~t~~GKidR~~L~~~~~~~~~~ 517 (620)
T 4dg8_A 472 -----------PQAL-----LRQLPTWQRPHACVRV------EALPLTAHGKLDRAALLRRLEEPLER 517 (620)
T ss_dssp -----------CHHH-----HHHSCGGGSCSEEEEC------SSCCCC----CCHHHHHHHTCSCC--
T ss_pred -----------HHHH-----HHhChhhcCCcEEEEE------CcCCCCcccCHhHHHHhhcccccccc
Confidence 0111 2468999999999987 45699999999999999887654433
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.3e-71 Score=611.79 Aligned_cols=493 Identities=16% Similarity=0.136 Sum_probs=395.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
++.++.+.|+++++++|+++|+.+. + +++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 72 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3678999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|+++.++.+++.++++.++++++|++.+....+. .. . ...
T Consensus 73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~ 122 (521)
T 3l8c_A 73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVS 122 (521)
T ss_dssp HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEE
T ss_pred HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccc
Confidence 99999999999999999999999999999999999876433211 00 1 112
Q ss_pred HHHHHhcC--ccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006128 200 WDEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (660)
Q Consensus 200 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (660)
+.++.... ...........++++++|+|||||||.||+|++||+++.+.+....... ..++..++++++..|++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 199 (521)
T 3l8c_A 123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSF 199 (521)
T ss_dssp HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTS
T ss_pred hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccH
Confidence 22221111 0112223456789999999999999999999999999998877654431 126788999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006128 278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
..++...+.++..|+++++.+. ++..+++.+.++++|+++++|+++..+.....
T Consensus 200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 257 (521)
T 3l8c_A 200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD---------------------- 257 (521)
T ss_dssp GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence 8888778888999999998864 78999999999999999999999987653110
Q ss_pred HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCceeeecCCCCCCCceecccCCC-
Q 006128 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE- 431 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~- 431 (660)
.... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 ---------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 314 (521)
T 3l8c_A 258 ---------------FCQA--------KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE 314 (521)
T ss_dssp ---------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred ---------------cccc--------cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence 0001 114899999999999999999999888 899999999999998776544322
Q ss_pred ---ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEEC
Q 006128 432 ---MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQIL 504 (660)
Q Consensus 432 ---~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~ 504 (660)
.....++|+|+++++++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|
T Consensus 315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 315 MVDNYTRLPIGYPKPDSPTYIID-EDGKE--LSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp HHHHCSSCEEEEECTTSCEEEEC-TTSCB--CCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred cccCCCccccccccCCCEEEEEC-CCcCC--CCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 12336899999999999999 76654 4556899999999999999999999999988 35799999999999
Q ss_pred CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC----CeEEEEEEcChhhHHHHHHHCCCCCcH
Q 006128 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK----SMLVAVVVPCEEDTKKWAYSNGHAGSF 580 (660)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~ 580 (660)
++|++++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++.++....
T Consensus 392 ~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~----------- 459 (521)
T 3l8c_A 392 EDNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKER----------- 459 (521)
T ss_dssp SSSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGG-----------
T ss_pred CCCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccc-----------
Confidence 99999999999999997 7999999999999999999999999986532 4789999998753100
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
.+ -...+.++|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|+++++++
T Consensus 460 ----~~--~~~~~~~~l~~~l~-~~l~~~~~P~~i~~v------~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 460 ----FD--RELELTKAIKASVK-DHMMSYMMPSKFLYR------DSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ----CS--SHHHHHHHHHHHSG-GGSCGGGSCSEEEEC------SSCCBCTTSSBCHHHHHHHTC--
T ss_pred ----cc--cchhhHHHHHHHHH-hhCccccCCeEEEEe------cccCCCCCcCccHHHHhhhhhcC
Confidence 00 01123456666665 789999999999986 44699999999999999998664
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.3e-71 Score=611.90 Aligned_cols=475 Identities=20% Similarity=0.225 Sum_probs=391.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
...++.++|+++++++||++|+++. + +++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcceee
Q 006128 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (660)
Q Consensus 120 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
||+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..++...
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST----------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh----------------
Confidence 99999999999999999999999999999999999987654432211 111222222110
Q ss_pred HHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHH
Q 006128 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (660)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (660)
+ . .. .......+..++++++|+|||||||.||+|++||+++.+.+......+ ++..+|++++++|++|..
T Consensus 167 ~---~-~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 236 (563)
T 1amu_A 167 I---K-IR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 236 (563)
T ss_dssp T---T-TS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred h---c-cc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 0 0 00 111122345678999999999999999999999999998887776666 788999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 006128 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (660)
Q Consensus 280 g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (660)
++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 290 (563)
T 1amu_A 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence 88778889999999998863 789999999999999999999998765310
Q ss_pred HhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC--cc
Q 006128 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC 433 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--~~ 433 (660)
..+++|.+++||+++++++.+.|.+ .+++++.||+||++..++...... ..
T Consensus 291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 343 (563)
T 1amu_A 291 -------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG 343 (563)
T ss_dssp -------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred -------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCC
Confidence 0148999999999999999999876 478999999999998766544322 22
Q ss_pred ccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEECCC
Q 006128 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILPN 506 (660)
Q Consensus 434 ~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~ 506 (660)
...++|+|+++++++|+| +++.. ++.|+.|||+|+||+++.||+++++.+.+.|. ++||+|||+|++|+|
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~d 420 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENLQL--KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD 420 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred CCCcccceeCCCEEEEEC-CCcCC--CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCC
Confidence 447899999999999999 76654 44568999999999999999999999999883 259999999999999
Q ss_pred CcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHH
Q 006128 507 GVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLEL 583 (660)
Q Consensus 507 G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 583 (660)
|+|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++..+.
T Consensus 421 G~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~----------------- 482 (563)
T 1amu_A 421 GNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI----------------- 482 (563)
T ss_dssp SCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----------------
T ss_pred CeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-----------------
Confidence 999999999999997 8999999999999999999999999987654 3788998876421
Q ss_pred hccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHH
Q 006128 584 CSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYY 644 (660)
Q Consensus 584 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~ 644 (660)
+ .++|+++++ .+||.|++|+.|++++ .+|+|++||++|++|++.+
T Consensus 483 -~--------~~~l~~~l~-~~L~~y~~P~~i~~v~------~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 -P--------LEQLRQFSS-EELPTYMIPSYFIQLD------KMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp -C--------HHHHHHHHH-HHSCGGGSCSEEEECS------SCCBCTTSSBCGGGSCCCC
T ss_pred -C--------HHHHHHHHH-hhCchhhCCcEEEEec------ccCCCCCcChhHHhcCCcc
Confidence 1 123444444 6799999999999874 4699999999999998754
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.7e-71 Score=606.24 Aligned_cols=491 Identities=22% Similarity=0.213 Sum_probs=374.3
Q ss_pred cHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 006128 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (660)
Q Consensus 43 ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~ 122 (660)
||.++|+++++++||++|+++. + +++||+||.++++++|++|++. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999875 3 5899999999999999999986 89999999999999999999999
Q ss_pred hCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce-eeHH
Q 006128 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD 201 (660)
Q Consensus 123 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (660)
++|++++|+++.++.+++.++++.++++++|++............ ......+......... ......... ....
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL---LDNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc---cccccccccccchh
Confidence 999999999999999999999999999999999876543322111 0111111110000000 000000000 0011
Q ss_pred HHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHH
Q 006128 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (660)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~ 281 (660)
.+...............++++++|+|||||||.||+|.+||+++.+.+......+ ++..++++++++|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111223345789999999999999999999999999999998887777 88999999999999999999
Q ss_pred HHHHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCC
Q 006128 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (660)
Q Consensus 282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (660)
...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988653110
Q ss_pred CCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCC-ccccCccC
Q 006128 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (660)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~~~G 439 (660)
...++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ....+++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0027899999999999999999987 5999999999999987655443322 33457899
Q ss_pred CCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCee
Q 006128 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLI 519 (660)
Q Consensus 440 ~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i 519 (660)
.|+++++++++| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+++++||.||+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999 44 235799999999999999999998887 889999999999999999999999999999
Q ss_pred EcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHH
Q 006128 520 KISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSE 596 (660)
Q Consensus 520 ~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (660)
|+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++++...+. +. ++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~~--------~~ 454 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------SK--------AQ 454 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------CH--------HH
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------CH--------HH
Confidence 96 8999999999999999999999999987654 3778888865432 11 23
Q ss_pred HHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHHHHHH
Q 006128 597 LKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVE 647 (660)
Q Consensus 597 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~ 647 (660)
|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|++.+.++
T Consensus 455 l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 455 LIAYLS-KHLAKYKVPKHFEKV------DTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHH-HHSCGGGSCSEEEEC------SSCC-------------------
T ss_pred HHHHHH-hhCccccCCCEEEEe------cccCCCCCCCEeHHHHhhccccc
Confidence 444444 579999999999987 44699999999999999888654
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.6e-71 Score=650.09 Aligned_cols=540 Identities=24% Similarity=0.308 Sum_probs=345.4
Q ss_pred CCCCCCCCceeccccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHH
Q 006128 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (660)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~ 95 (660)
.+.+....+|++...+..+ +...|+.++|.++++++||++|+++. +.. +++||+||.++++++|++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence 3344556667765433322 34589999999999999999999875 321 689999999999999999999
Q ss_pred cCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccE
Q 006128 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV 175 (660)
Q Consensus 96 ~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 175 (660)
.|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+...... .. ..
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence 9999999999999999999999999999999999999999999999999999999999998766544332211 11 23
Q ss_pred EEEecCCcHHHHHHHhhCCcceeeHHHHHhcCcc--CCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhh
Q 006128 176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253 (660)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~ 253 (660)
++.+++... .........+.++...... ...+.....++++++|+|||||||.||+|+++|+++++.+....
T Consensus 185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 444443210 0011224455555443322 12233456789999999999999999999999999998876644
Q ss_pred hhcccccCCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHH
Q 006128 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (660)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 331 (660)
.... ....+..++++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+...
T Consensus 259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 3211 0125788999999999999999965 6777999999999876 99999999999999999999999998865211
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc-CCc
Q 006128 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF 410 (660)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~ 410 (660)
....+ +++||.+++||+++++++.+++.+.+ +++
T Consensus 338 -------------------------------------~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 372 (979)
T 3tsy_A 338 -------------------------------------TEKYD--------LSSIRVVKSGAAPLGKELEDAVNAKFPNAK 372 (979)
T ss_dssp -------------------------------------GGTSC--------CTTCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred -------------------------------------ccCCC--------ccceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence 11111 24899999999999999999999988 899
Q ss_pred eeeecCCCCCCCceeccc----CCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 006128 411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486 (660)
Q Consensus 411 v~~~YG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~ 486 (660)
+++.||+||++.+++... .......+++|.|+++++++|+| ++++ .+++.|+.|||+|+||+++.||+++++.+
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~g~~v~~GY~~~p~~t 450 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKGYLNNPAAT 450 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC-TTSC-CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe-CCCC-CCCCCCCccEEEEECCCccccccCChhhh
Confidence 999999999998766542 12233458999999999999999 5433 34556789999999999999999999999
Q ss_pred hhcc-cCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEc
Q 006128 487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVP 562 (660)
Q Consensus 487 ~~~~-~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~ 562 (660)
.+.| .+|||+|||+|++|+||.|+++||.||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+.
T Consensus 451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~ 529 (979)
T 3tsy_A 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529 (979)
T ss_dssp HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence 9999 7999999999999999999999999999998 7999999999999999999999999987654 478899887
Q ss_pred ChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006128 563 CEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
.++.. . . .++|+++++ .+||.|++|+.++++ +.+|+|++||++|++|++
T Consensus 530 ~~~~~--------~--------~--------~~~l~~~l~-~~l~~~~~p~~i~~v------~~lP~t~~GKi~r~~L~~ 578 (979)
T 3tsy_A 530 SKDSE--------L--------S--------EDDVKQFVS-KQVVFYKRINKVFFT------ESIPKAPSGKILRKDLRA 578 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC--------C--------C--------HHHHHHHHH-HhcccccCCeEEEEe------CCcCcCCCCCeeHHHHHH
Confidence 76431 0 0 123444444 789999999998886 446999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 006128 643 YYQVEIDQLYEKL 655 (660)
Q Consensus 643 ~~~~~i~~~y~~~ 655 (660)
+|.+.+...|..+
T Consensus 579 ~~~~~~~~~~~~~ 591 (979)
T 3tsy_A 579 KLANGLGSGMASV 591 (979)
T ss_dssp ----------CCH
T ss_pred HHHhhcCCccccc
Confidence 9999888887654
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4e-71 Score=603.87 Aligned_cols=478 Identities=25% Similarity=0.295 Sum_probs=373.9
Q ss_pred CCCCCcHHHHHHHHHHhCCC-CCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006128 38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~ 116 (660)
...|.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++
T Consensus 18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~ 83 (505)
T 3nyq_A 18 GSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV 83 (505)
T ss_dssp ------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred CcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence 34588999999999999887 9999875 3 68999999999999998774 48899999999999999
Q ss_pred HHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcc
Q 006128 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (660)
Q Consensus 117 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (660)
++|||+++|++++|++|.++.+++.+++++++++++|++..... ......+..+ ..+..
T Consensus 84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~-------------- 142 (505)
T 3nyq_A 84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR-------------- 142 (505)
T ss_dssp HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT--------------
T ss_pred HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc--------------
Confidence 99999999999999999999999999999999999999865211 0011111111 11100
Q ss_pred eeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChh
Q 006128 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (660)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (660)
.....+.....++++++|+|||||||.||+|+++|+++.+.+..+...+ ++..++++++.+|++
T Consensus 143 -----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 -----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF 206 (505)
T ss_dssp -----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred -----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence 0112223445789999999999999999999999999999999888777 889999999999999
Q ss_pred HHHHHHH-HHHHhhcCcEEEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 006128 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (660)
Q Consensus 277 ~~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
|..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.......
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 266 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------- 266 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence 9999875 6788999999998876 889999999 88999999999999998764321110
Q ss_pred HHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccc
Q 006128 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (660)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 434 (660)
....+ +++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ..
T Consensus 267 ---------------~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~ 322 (505)
T 3nyq_A 267 ---------------LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322 (505)
T ss_dssp ---------------HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred ---------------hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence 00112 2889999999999999999999999999999999999997766554433 34
Q ss_pred cCccCCCccCeeEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEECCCCcEEEE
Q 006128 435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (660)
Q Consensus 435 ~~~~G~~~~~~~v~ivd~~~~~~~~~-~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~G~l~~~ 512 (660)
.+++|+|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.++++
T Consensus 323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~ 401 (505)
T 3nyq_A 323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401 (505)
T ss_dssp TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence 48999999999999999 77765554 446899999999999999999999999999 6999999999999999999999
Q ss_pred ecc-CCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHH
Q 006128 513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQ 588 (660)
Q Consensus 513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (660)
||+ ||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.. .. .
T Consensus 402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~---------~~------~--- 462 (505)
T 3nyq_A 402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAA---------PP------A--- 462 (505)
T ss_dssp EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTS---------CC------C---
T ss_pred CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCC---------CC------C---
Confidence 998 599997 8999999999999999999999999987654 48999999876320 00 1
Q ss_pred HHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006128 589 LQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 589 ~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
.++|+++++ .+||.|++|+.|+++ +.+|+|++||++|++|++
T Consensus 463 -----~~~l~~~l~-~~L~~~~~P~~i~~v------~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 463 -----LGTLADHVA-ARLAPHKRPRVVRYL------DAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp -----HHHHHHHHH-HHTCGGGSCSEEEEC------SCCCC-------------
T ss_pred -----HHHHHHHHH-hhCCCCcCccEEEEE------CCCCCCCCcCeeHHhhcc
Confidence 123444444 679999999999987 446999999999999986
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.6e-69 Score=599.75 Aligned_cols=517 Identities=18% Similarity=0.210 Sum_probs=403.3
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 006128 29 LASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (660)
Q Consensus 29 ~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~ 108 (660)
...+++|...+++.|+.++|+++++++|+.+++... .+..+++||+||.++++++|++|++.|+++||+|++++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 456788888889999999999999999998877432 22237899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhCCCeEEecCCCCC-------hhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecC
Q 006128 109 ANCPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 109 ~n~~e~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (660)
+|++++++++|||+++|++++|+++.++ .+++..+++.++++++|++.+....+..... ...... +
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~-~----- 154 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELH-V----- 154 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCE-E-----
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcce-e-----
Confidence 9999999999999999999999999998 7899999999999999999886655433221 111111 1
Q ss_pred CcHHHHHHHhhCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhh-ccccc
Q 006128 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFE 260 (660)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~-~~~~~ 260 (660)
...... ..............++++++|+|||||||.||+|+++|+++++.+..+... +
T Consensus 155 ----------------~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---- 213 (576)
T 3gqw_A 155 ----------------LSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI---- 213 (576)
T ss_dssp ----------------EEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS----
T ss_pred ----------------cchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc----
Confidence 111111 111122223344568999999999999999999999999999888776443 4
Q ss_pred CCCCCCcEEEEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHH
Q 006128 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (660)
Q Consensus 261 ~~~~~~~~~l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 334 (660)
++..+|++++++|++|.+|+.. .+.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+......
T Consensus 214 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~ 292 (576)
T 3gqw_A 214 -KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD 292 (576)
T ss_dssp -CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH
T ss_pred -CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc
Confidence 7889999999999999999876 5667889999888763 78999999999999999999999987754322110
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhc------C
Q 006128 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------C 408 (660)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~ 408 (660)
... ..++++|.+++||+++++++.++|.+.+ +
T Consensus 293 ----------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 293 ----------------------------------LAE--------LDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp ----------------------------------HTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred ----------------------------------ccc--------CChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 111 1125899999999999999999999887 6
Q ss_pred CceeeecCCCCCCCceecccCCCc---------------------------cccCccCCCccCeeEEeeecCCCCCCCCC
Q 006128 409 AFLVQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLD 461 (660)
Q Consensus 409 ~~v~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~v~ivd~~~~~~~~~~ 461 (660)
..+++.||+||++..++....... ....++|+|+++++++|+| +++.. ++
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~--~~ 407 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMP--VA 407 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCB--CC
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCC--CC
Confidence 789999999999988776542210 1113789999999999999 76654 45
Q ss_pred CCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcC
Q 006128 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541 (660)
Q Consensus 462 ~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~ 541 (660)
.|+.|||+|+||+++.||++++..+...+.+|||+|||+|++ +||.|+++||.||+||+ +|++|+|.+||++|.+||+
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred CCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 568999999999999999999998888889999999999999 79999999999999998 8999999999999999999
Q ss_pred cceEEEEecCCC-CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecC
Q 006128 542 IEDIWVYGDSLK-SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPR 620 (660)
Q Consensus 542 V~~~~V~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~ 620 (660)
|.+++|++..+. ...+++++...+. ....+.+.+.+.+.+. +.|++|..+.+++
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~l~~~l~----~~~~~p~~i~~v~- 540 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRISD--------------------EERRGQLIHALAARIQ----SEFGVTAAIDLLP- 540 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCCC--------------------HHHHHHHHHHHHHHHH----HHHSCCEEEEEEC-
T ss_pred cccccEEEEEcCCccEEEEEEEecCc--------------------hhHHHHHHHHHHHHHH----HHhCCceeEEEEC-
Confidence 998777764433 3444555444321 1122233333332221 4678888888874
Q ss_pred CCCCCCCccccccccchHHHHHHHHHHHHHHHhhh
Q 006128 621 PFDMERDLVTATLKKKRNKLLIYYQVEIDQLYEKL 655 (660)
Q Consensus 621 ~~~~~~~P~t~~GKv~R~~l~~~~~~~i~~~y~~~ 655 (660)
.+.+|+|++||++|++|+++|++.++..|...
T Consensus 541 ---~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~ 572 (576)
T 3gqw_A 541 ---PHSIPRTSSGKPARAEAKKRYQKAYAASLNVQ 572 (576)
T ss_dssp ---SSCSCBCTTSSBCHHHHHHHHHHHHTCC----
T ss_pred ---CCCcCcCCCccchHHHHHHHHHHHhhhccchh
Confidence 24679999999999999999999988777543
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=9.8e-69 Score=598.47 Aligned_cols=504 Identities=17% Similarity=0.194 Sum_probs=395.4
Q ss_pred CCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006128 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (660)
Q Consensus 39 ~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~ 118 (660)
.+..|+.++|+++|+++||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35689999999999999999999986 42 23378999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEecCCCCC---hhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCc
Q 006128 119 EACNALSLICVPLYDTLG---PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (660)
Q Consensus 119 lA~~~~G~~~vpl~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 195 (660)
|||+++|++++|++|.++ .+++..+++.+++++++++......+.............+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 5789999999999999999887665543221111111111111
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh
Q 006128 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (660)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl 275 (660)
....+... ...........++++++|+|||||||.||+|++||+++++.+......+ ++..++++++++|+
T Consensus 147 ---~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 147 ---ALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ---EGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ---echhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11111110 0112233456789999999999999999999999999999999887777 88999999999999
Q ss_pred hHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 006128 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (660)
Q Consensus 276 ~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (660)
+|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 281 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------- 281 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence 99999987 7788999999998864 7899999999999999999999999886532111
Q ss_pred HHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCCCCCCCc
Q 006128 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP 423 (660)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~~~ 423 (660)
.....+ ++++|.+++||+++++++.+.+.+.++ ..+++.||+||++++
T Consensus 282 ------------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 282 ------------------KKEGLD--------LSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp ------------------GGTTCC--------CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred ------------------hccCCC--------chhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 011111 258999999999999999999998873 479999999999988
Q ss_pred eecccCC--------------------------CccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 006128 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (660)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~ 477 (660)
++..... ......++|.|+++ ++|+| ++++ .+++.|+.|||+|+||+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTL-IPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTC-CBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCC-cCCCCCCEEEEEEeCCcccc
Confidence 7754321 12234688999988 88888 5533 45566789999999999999
Q ss_pred ccCCCchhhhhcccC-------C--ccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH-hcCcCcc--eE
Q 006128 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DI 545 (660)
Q Consensus 478 gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~ 545 (660)
||+++++.+.+.|.+ | ||+|||+|++| +|.|+++||.||+||+ +|++|+|.+||++| ..||.|. +|
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence 999999999999843 5 99999999999 9999999999999998 89999999999999 8899998 79
Q ss_pred EEEecCCC--CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCceeee-EEEEecCCC
Q 006128 546 WVYGDSLK--SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEHIK-GVILDPRPF 622 (660)
Q Consensus 546 ~V~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~ 622 (660)
+|++.+++ +.+++++++.++.. .+ ....++.+++++.|.+ .|++|. .+.+++
T Consensus 490 ~v~~~~~~~~~~~~~~v~~~~~~~----------~~----~~~~~l~~~l~~~l~~--------~~~~p~~~i~~v~--- 544 (590)
T 3kxw_A 490 AAFVIQEEHEYKLTVMCEVKNRFM----------DD----VAQDNLFNEIFELVYE--------NHQLEVHTIVLIP--- 544 (590)
T ss_dssp EEEEEEETTEEEEEEEEEESCTTC----------CH----HHHHHHHHHHHHHHHH--------HHSCCCCEEEEEE---
T ss_pred EEEEecCCCCceEEEEEEeccccc----------cc----hhHHHHHHHHHHHHHH--------HcCCceeEEEEEC---
Confidence 98886543 47888888776420 00 0122333444433322 144443 455553
Q ss_pred CCCCCccccccccchHHHHHHHHH
Q 006128 623 DMERDLVTATLKKKRNKLLIYYQV 646 (660)
Q Consensus 623 ~~~~~P~t~~GKv~R~~l~~~~~~ 646 (660)
++.+|+|++||++|++|+++|.+
T Consensus 545 -~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 545 -LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp -TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred -CCccCcCCCcHHHHHHHHHHHHc
Confidence 35679999999999999999965
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-69 Score=600.57 Aligned_cols=522 Identities=16% Similarity=0.133 Sum_probs=319.2
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCceeeeccccC----CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006128 36 SVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (660)
Q Consensus 36 ~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~ 111 (660)
....+..|+.++|+++|+++||++|+++. ++ .....+++||+||.++++++|+.|.+.|+ +||+|+++++|+
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~ 89 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS 89 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence 33445678999999999999999999876 32 12234789999999999999999999999 799999999999
Q ss_pred hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHh
Q 006128 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (660)
Q Consensus 112 ~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 191 (660)
+++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... ......++.....
T Consensus 90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~--------- 154 (562)
T 3ite_A 90 LIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ--------- 154 (562)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH---------
T ss_pred HHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch---------
Confidence 9999999999999999999999999999999999999999999876544321 1111122222111
Q ss_pred hCCcceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhccc---ccCCCCCCcE
Q 006128 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQ---FEDKMTVDDV 268 (660)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~---~~~~~~~~~~ 268 (660)
.+.+..... ..........++++++|+|||||||.||+|++||+++.+.+..+...+.. ....+...++
T Consensus 155 -------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (562)
T 3ite_A 155 -------SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK 226 (562)
T ss_dssp -------HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCE
T ss_pred -------hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCce
Confidence 122222221 11222334567889999999999999999999999999887765543211 1124678899
Q ss_pred EEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHH
Q 006128 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (660)
Q Consensus 269 ~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (660)
+++..|+.|..++...+.++..|+++++.+. .+..+++.++++++|+++++|++++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------- 289 (562)
T 3ite_A 227 FLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------- 289 (562)
T ss_dssp EECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------
T ss_pred EEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------
Confidence 9999999998888778888999999988764 467889999999999999999987764210
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceec
Q 006128 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (660)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 426 (660)
+ . ..++||.+++||+++++++.+.+.+.+++.+++.||+||++..++.
T Consensus 290 --------------------~----~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 337 (562)
T 3ite_A 290 --------------------P----E--------DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSA 337 (562)
T ss_dssp --------------------G----G--------GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEE
T ss_pred --------------------c----c--------ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeee
Confidence 0 0 1148999999999999999999998889999999999999987776
Q ss_pred ccCCCccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEEC
Q 006128 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQIL 504 (660)
Q Consensus 427 ~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~ 504 (660)
.........+++|.|+++++++++| ++++ .+++.|+.|||+|+||+++.||+++++.+...+.+| ||+|||+|++|
T Consensus 338 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d 415 (562)
T 3ite_A 338 GRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD 415 (562)
T ss_dssp EECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC
T ss_pred eeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc
Confidence 6655444557899999999999999 5444 345667899999999999999999999888777777 99999999999
Q ss_pred CCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcC-cCcceEEEEecCCCC---eEEEEEEcChhhHHHHHHHCCCCCcH
Q 006128 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDIWVYGDSLKS---MLVAVVVPCEEDTKKWAYSNGHAGSF 580 (660)
Q Consensus 505 ~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~V~~~~~~~---~~~a~v~~~~~~~~~~~~~~~~~~~~ 580 (660)
+||+|+++||.||+||+ +|++|+|.|||++|.+| |.+.+|+|++.+++. ..++.++...+... ..++
T Consensus 416 ~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~ 486 (562)
T 3ite_A 416 ADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAV--------RGEL 486 (562)
T ss_dssp TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred CCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccc--------cccc
Confidence 99999999999999997 89999999999999988 888899988866542 33333333332210 0000
Q ss_pred HHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccc-cccccchHHHHHHHHHH-HHHHHhh
Q 006128 581 LELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVT-ATLKKKRNKLLIYYQVE-IDQLYEK 654 (660)
Q Consensus 581 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t-~~GKv~R~~l~~~~~~~-i~~~y~~ 654 (660)
.. ..+-...+.++|+++++ .+||.|++|+.|++++ .+|+| ++||++|++|+++|++. ..+++..
T Consensus 487 ~~---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~------~lP~t~~~GKi~r~~L~~~~~~~~~~~~~~~ 552 (562)
T 3ite_A 487 RW---INENYKEINNSLRQACE-QTLPAYMVPDFIIPIS------FIPLRDTSAKTDAKALEHMFHTLSLGELFGE 552 (562)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cc---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEec------cCCCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence 00 00112233456777776 7899999999999874 45888 89999999999999763 3455543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-66 Score=625.93 Aligned_cols=480 Identities=20% Similarity=0.230 Sum_probs=397.2
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006128 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (660)
Q Consensus 38 ~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~ 117 (660)
+....++.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|+++++++
T Consensus 460 ~~~~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~ 530 (1304)
T 2vsq_A 460 AHETKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIG 530 (1304)
T ss_dssp CCCCCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHH
Confidence 333479999999999999999999876 4 4899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCCcHHHHHHHhhCCcce
Q 006128 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (660)
Q Consensus 118 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 197 (660)
+|||+++|++++|++|.++.+++..+++++++++++++......+.. .+.....+.+++...
T Consensus 531 ~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------- 592 (1304)
T 2vsq_A 531 ILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR------------- 592 (1304)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG-------------
T ss_pred HHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc-------------
Confidence 99999999999999999999999999999999999998765443211 111123333332110
Q ss_pred eeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhH
Q 006128 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (660)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (660)
+ ......+.....+++++||+|||||||.||||+++|+++.+.. .....+ ++..+++++.+.|++|
T Consensus 593 -----~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~f 658 (1304)
T 2vsq_A 593 -----F---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAF 658 (1304)
T ss_dssp -----G---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTS
T ss_pred -----c---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccH
Confidence 0 0011122334578999999999999999999999999998763 333333 7889999999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEecC----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 006128 278 ILDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (660)
Q Consensus 278 ~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (660)
..+...++.++..|+++++.+. ++..+.+.|.++++|+++++|+++..+.+....
T Consensus 659 d~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~--------------------- 717 (1304)
T 2vsq_A 659 DAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED--------------------- 717 (1304)
T ss_dssp THHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH---------------------
T ss_pred HHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh---------------------
Confidence 8888778899999999999874 889999999999999999999999988642100
Q ss_pred HHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC-CceeeecCCCCCCCceecccCCC-
Q 006128 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE- 431 (660)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~- 431 (660)
.+ ++||.+++|||++++++.+.+.+.++ +.++|+||+||++++++......
T Consensus 718 -------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~ 770 (1304)
T 2vsq_A 718 -------------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL 770 (1304)
T ss_dssp -------------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC
T ss_pred -------------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc
Confidence 01 28999999999999999999888774 78999999999998877654322
Q ss_pred --ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEE
Q 006128 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQ 502 (660)
Q Consensus 432 --~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~ 502 (660)
.....++|+|+++++++|+| +++.. ++.|+.|||||+|+++++||+++++.|.++|. ++||+|||+|+
T Consensus 771 ~~~~~~~~iG~p~~~~~~~i~d-~~~~~--~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~ 847 (1304)
T 2vsq_A 771 PDSISSLPIGKPISNASVYILN-EQSQL--QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLAR 847 (1304)
T ss_dssp CSSCSSCCCBEECTTEEEEEEC-TTSCB--CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEE
T ss_pred cccCCCCCCceeeCCCEEEEEC-CCcCC--CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEE
Confidence 22336899999999999999 76654 44568999999999999999999999999982 34999999999
Q ss_pred ECCCCcEEEEeccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCc
Q 006128 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGS 579 (660)
Q Consensus 503 ~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~ 579 (660)
+++||.|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++|+|+.....
T Consensus 848 ~~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~------------- 913 (1304)
T 2vsq_A 848 WLPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL------------- 913 (1304)
T ss_dssp ECTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS-------------
T ss_pred EcCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC-------------
Confidence 9999999999999999998 7999999999999999999999999986543 4899999876531
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHHHHHH
Q 006128 580 FLELCSLVQLQNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNKLLIY 643 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~ 643 (660)
+. ++|+++++ ..||.|++|..+++++ .+|+|++||++|++|.+.
T Consensus 914 -----~~--------~~l~~~l~-~~Lp~ymvP~~~~~l~------~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 914 -----SA--------EDVKAHLK-KQLPAYMVPQTFTFLD------ELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp -----CH--------HHHHHHHH-HHSCGGGSCSEEEEES------CCCCCSSCSSCCSCCCCC
T ss_pred -----CH--------HHHHHHHH-HhChHhhhccEEEEec------ccCCCCCcccCHhhcCCc
Confidence 11 23444443 6799999999999874 468999999999988654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.8e-56 Score=486.86 Aligned_cols=401 Identities=16% Similarity=0.198 Sum_probs=312.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006128 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (660)
Q Consensus 40 ~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~l 119 (660)
...++.++|+++++++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35789999999999999999999871101334455799999999999999999999996 99999999999999999999
Q ss_pred HHHhCCCeEEecCC---CCChhHHHHHHhcccceEEEEccchhhhhhcccccccc-CccEEEEecCCcHHHHHHHhhCCc
Q 006128 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAVQTGI 195 (660)
Q Consensus 120 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 195 (660)
||+++|++++|+++ .++.+++..+++.++++++|++......+.+....... ....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999998876655443221110 111222222110
Q ss_pred ceeeHHHHHhcCccCCccCCCCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCC------CcEE
Q 006128 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (660)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 269 (660)
.............++++++|+|||||||.||+|++||+++.+.+......+ .+.. ++++
T Consensus 169 ----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 000112233455788999999999999999999999999999888877666 5555 8999
Q ss_pred EEecChhHHHHHHH-HHHHhhcCcEEEEecC-----ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 006128 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (660)
Q Consensus 270 l~~~pl~~~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 343 (660)
++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999875 6788999999999862 889999999999999 88899988877543110
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcC------CceeeecCC
Q 006128 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (660)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~ 417 (660)
.+.....+ +++||.+++||+++++++.+++.+.++ +.+++.||+
T Consensus 302 ----------------------~~~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMAGRD--------LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGTTCC--------CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------cccccccc--------hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 01111111 259999999999999999999999874 469999999
Q ss_pred CCCCCceecccCCC------------------------ccccCccCCCccCeeEEeeecCCCCCCCCCCCCCceEEEccC
Q 006128 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (660)
Q Consensus 418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~v~ivd~~~~~~~~~~~~~~Gei~v~g~ 473 (660)
||++..++...... .....++|+|++ ++++|+| ++++ .+++.|+.|||+|+||
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g-~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTC-IECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTT-EECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCC-cCCCCCCEEEEEEeCC
Confidence 99998877655432 123468999999 9999999 5533 3455678999999999
Q ss_pred CcccccCCCchhhhhcc------------cCCccccCceEEECCCCcEEEEec
Q 006128 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (660)
Q Consensus 474 ~~~~gy~~~~~~~~~~~------------~~g~~~TGDl~~~~~~G~l~~~GR 514 (660)
+++.||+++++.+.+.| .+|||+|||+|++| ||+|+++||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.6e-50 Score=416.13 Aligned_cols=314 Identities=17% Similarity=0.122 Sum_probs=258.3
Q ss_pred CCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEec
Q 006128 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (660)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~ 298 (660)
.|++++|+|||||||.||+|++||+++.+.+..+...+ ++.++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999998888777 8899999999999999999988888999999998887
Q ss_pred CChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHHHHHHH
Q 006128 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (660)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (660)
. ...++..|+++++|+++++|+++..|++.... ..++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 4 23446789999999999999999988652110 0112
Q ss_pred HHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCceecccCCCccccCccCCCccCeeEEeeecCCCCCC
Q 006128 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (660)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~v~ivd~~~~~~~ 458 (660)
++||.+++||+++++++.+++++ +++++++.||+||++..++....+.... +++|.+.|++++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 38999999999999999999987 5999999999999998888776655443 7889999999888755
Q ss_pred CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCCcEEEEeccCCeeEcCCCeeecchhHHHHH--
Q 006128 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (660)
Q Consensus 459 ~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 536 (660)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+||+ +|++|+|.+||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999997 89999999999877
Q ss_pred -hcCcCcceEEEE-ecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHhCCCCCcee
Q 006128 537 -CVAPIIEDIWVY-GDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAERNKLRGFEH 611 (660)
Q Consensus 537 -~~~p~V~~~~V~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 611 (660)
.+||.|.+|+|+ +.+++ +.++|+|+..... ...++|+++++ .+||.|++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-------------------------~~~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-------------------------ALTERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-------------------------HHHHHHHHHHH-HHSCGGGS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-------------------------cCHHHHHHHHH-hhCCCCCC
Confidence 468999999886 44433 4788888776532 11234555554 67999999
Q ss_pred eeEEEEecCCCCCCCCccccccccchHHHHHHHHHHH
Q 006128 612 IKGVILDPRPFDMERDLVTATLKKKRNKLLIYYQVEI 648 (660)
Q Consensus 612 p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~~~~~~i 648 (660)
|+.|++++ .+|+|++||++|++|++++.+..
T Consensus 326 P~~i~~v~------~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 326 PKHIYFAK------AFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CSCEEEES------SCCBCTTSCBCHHHHHHHTC---
T ss_pred ceEEEEEC------CcCCCCCCChhHHHHHHHhhhhc
Confidence 99999974 45899999999999999886643
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=9.2e-44 Score=381.20 Aligned_cols=334 Identities=17% Similarity=0.176 Sum_probs=248.9
Q ss_pred CCCC-CceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHH-HHHHHhhcCcE
Q 006128 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (660)
Q Consensus 216 ~~~~-~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~l~~l~~G~~ 293 (660)
...+ +++++++|||||||.||+|++||+++.+.+..+...+.. .++..+|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 899999999999999999999999998777665332211 2678899999999987655544 46777999999
Q ss_pred EEEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHH
Q 006128 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (660)
Q Consensus 294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (660)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 89999999999999999999999999876543321000
Q ss_pred HHHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeee
Q 006128 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (660)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd 451 (660)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +...... . ...|.+.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 0148999999999999999999999999999999999999654 3332221 1 2356677899999999
Q ss_pred cCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCCC------c---EEEEeccCCeeEcC
Q 006128 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKIS 522 (660)
Q Consensus 452 ~~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~G------~---l~~~GR~~d~i~~~ 522 (660)
++.+ .+++.|+.|||+|+|. +...|.++||+|||+|+++++| . +++.||.||+|++
T Consensus 272 -~~~g-~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 -PETG-EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp -TTTC-SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred -CCCC-CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 4433 3455678999999983 2334568999999999999998 5 6999999999998
Q ss_pred CCeeecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHH
Q 006128 523 QGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKN 599 (660)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 599 (660)
+|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++. +.. ..+.. ...++.+++.+.|.+
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~---------~~~~~---~~~~l~~~l~~~l~~ 403 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS---------TDNYI---ELEKIRRDIIRQLKD 403 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC---------CCCHH---HHHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc---------ccchh---hHHHHHHHHHHHHHH
Confidence 899999999999999999999999988654 35899999988 430 00000 012344444444433
Q ss_pred HHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchHH
Q 006128 600 AAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRNK 639 (660)
Q Consensus 600 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~ 639 (660)
++ ++|..|.+++ .+.+|+|+ ||++|..
T Consensus 404 ~~--------~~p~~i~~v~----~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 404 EI--------LVTPKVKLVK----KGSLPQSE-GKAVRVK 430 (436)
T ss_dssp HH--------SSCCEEEEEC----TTCCC--------CEE
T ss_pred hc--------CCceEEEEeC----CCcccCcC-CcceEEE
Confidence 22 4566788774 24679999 9999863
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=9.1e-44 Score=382.04 Aligned_cols=338 Identities=17% Similarity=0.136 Sum_probs=256.0
Q ss_pred CCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEE
Q 006128 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (660)
Q Consensus 216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~ 294 (660)
...++++++++|||||||.||+|++||+++......+...+.. .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 4467899999999999999999999999998776554432211 267899999999998 5777776778889999999
Q ss_pred EEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHH
Q 006128 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (660)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (660)
++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 209 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------------------------ 209 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 88776 99999999999999999999999999876433211000
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006128 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (660)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd~ 452 (660)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++....... ...+.+.+++.++|+|
T Consensus 210 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 278 (443)
T 2y4o_A 210 -------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID- 278 (443)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC-
T ss_pred -------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc-
Confidence 0148999999999999999999999899999999999998543 333222111 1244567899999999
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECCC-CcE-----EEEeccCCeeEcCCCee
Q 006128 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (660)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~-G~l-----~~~GR~~d~i~~~~G~~ 526 (660)
++++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.||+|++ +|++
T Consensus 279 ~~~g-~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 279 PVTG-EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTTC-CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCCC-CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 5432 3455678999999983 233456899999999999999 986 899999999997 7999
Q ss_pred ecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcCh--hhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHH
Q 006128 527 VALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCE--EDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAA 601 (660)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 601 (660)
|+|.+||++|.+||+|.+++|++.++ .+.++++|++.+ +.. ... ....++.+++.+.
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~----------~~~---~~~~~l~~~l~~~----- 406 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAAS----------VTD---GERAALARELQHR----- 406 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTT----------CCH---HHHHHHHHHHHHH-----
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCccccc----------chh---hHHHHHHHHHHHH-----
Confidence 99999999999999999999887532 358889999886 310 000 0112233333332
Q ss_pred HhCCCCCc-eeeeEEEEecCCCCCCCCccccccccchHHHHH
Q 006128 602 ERNKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNKLLI 642 (660)
Q Consensus 602 ~~~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~l~~ 642 (660)
|+.| .+|..|.+++ ++++|+|++||++|+..++
T Consensus 407 ----l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 407 ----IKTMVGVSSGVTVLA----AGGIPATATGKARRVIDRR 440 (443)
T ss_dssp ----HHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEECC
T ss_pred ----HHHHhCCceEEEEeC----CCcccCccCCcceEEEecc
Confidence 3344 4677777773 3567999999999975443
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=6.5e-43 Score=374.72 Aligned_cols=334 Identities=18% Similarity=0.175 Sum_probs=254.9
Q ss_pred CCCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEE
Q 006128 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (660)
Q Consensus 216 ~~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~ 294 (660)
...++++++++|||||||.||+|++||+++...+..+...+.. .++..+|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 4467899999999999999999999999998776554432111 267889999999998 6777777778889999999
Q ss_pred EEecC-ChhhHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhCCCCCCcchhhhHHH
Q 006128 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (660)
Q Consensus 295 v~~~~-~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (660)
++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------------------------ 207 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------------------------ 207 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------------------------
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------------------------
Confidence 87765 89999999999999999999999999876543211000
Q ss_pred HHHHHHHhCCcEeEEEEccCCCCHHHHHHHHHhcCCceeeecCCCCCCCc-eecccCCCccccCccCCCccCeeEEeeec
Q 006128 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (660)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~v~ivd~ 452 (660)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. ++....... ...+.+.+++.++|+|
T Consensus 208 -------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 208 -------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp -------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred -------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 0148999999999999999999998889999999999998543 333222111 1245567899999999
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC-CCcE-----EEEeccCCeeEcCCCee
Q 006128 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (660)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~-~G~l-----~~~GR~~d~i~~~~G~~ 526 (660)
++++ .+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.||+|++ +|++
T Consensus 277 ~~~g-~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 277 PETG-EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTTC-CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCCC-CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 5432 3455678999999982 23445689999999999998 6985 899999999997 8999
Q ss_pred ecchhHHHHHhcCcCcceEEEEecC---CCCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHHHHHHHHHHHHHHHh
Q 006128 527 VALEYLENVYCVAPIIEDIWVYGDS---LKSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQLQNYILSELKNAAER 603 (660)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 603 (660)
|+|.+||++|.+||+|.+++|++.+ ..+.++|+|++.++.. .+. ....++.+++.+
T Consensus 343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~----------~~~---~~~~~l~~~l~~-------- 401 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA----------PDT---AAIQVAKQALAY-------- 401 (437)
T ss_dssp ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT----------TCH---HHHHHHHHHHHH--------
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc----------chh---hhHHHHHHHHHH--------
Confidence 9999999999999999999888743 2358999999886530 000 011223333332
Q ss_pred CCCCCc-eeeeEEEEecCCCCCCCCccccccccchHH
Q 006128 604 NKLRGF-EHIKGVILDPRPFDMERDLVTATLKKKRNK 639 (660)
Q Consensus 604 ~~l~~~-~~p~~i~~~~~~~~~~~~P~t~~GKv~R~~ 639 (660)
.|+.| .+|..|.+++ ++++|+|+ ||++|..
T Consensus 402 -~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 402 -DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp -HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred -HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 33445 4677777763 25679999 9999874
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=2.2e-27 Score=248.08 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=172.4
Q ss_pred CCCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecCh-hHHHHHHHHHHHhhcCcEEE
Q 006128 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (660)
Q Consensus 217 ~~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~l~~l~~G~~~v 295 (660)
..++++++|+|||||||.||+|.++|+++...+......+.. .++..++++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754432221 267889999999999 99999888777788999433
Q ss_pred EecCChh-----------------------hHHHHhhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 006128 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (660)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (660)
....++. .+++.|+++++|+++++|+++..|++....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~-------------------- 225 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV-------------------- 225 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence 3333666 788899999999999999999998754211
Q ss_pred HHHHhhCCCCCCcchhhhHHHHHHHHHHhCCcEeEEEEccCCCCHHHHHHHH-Hhc-CCceeeecCCCCCCCceecccCC
Q 006128 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (660)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~ 430 (660)
...++ +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..++.
T Consensus 226 -----------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 226 -----------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp -----------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred -----------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 01112 2899999999999999999999 898 8999999999999876643321
Q ss_pred CccccCccCCC------ccCeeEEeeecC-CCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEE
Q 006128 431 EMCMVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQI 503 (660)
Q Consensus 431 ~~~~~~~~G~~------~~~~~v~ivd~~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~ 503 (660)
.++|.+ +++++++|+| + ++. +++.|+.|||+|++.... .+ --+|+|||++.+
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~--~vp~G~~GEl~vt~l~~~------------~~-l~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQ--TVEYGERGNVIVTHLSPW------------AF-YPRVAERDTAIR 338 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCS--BCCTTCEEEEEEEEEETT------------EE-EEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCc--CCCCCCceEEEEEEcCcc------------cc-cccccCCceEEE
Confidence 247888 9999999999 5 444 555678999999983211 11 113889999887
Q ss_pred CCC--C-------cEEEEeccCCeeEc
Q 006128 504 LPN--G-------VVKIIDRKKNLIKI 521 (660)
Q Consensus 504 ~~~--G-------~l~~~GR~~d~i~~ 521 (660)
.+. | .+..++|.++..++
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC--------
T ss_pred ecCCCCCcCcccccceeccccCCCcee
Confidence 532 2 24556666666665
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.33 E-value=2.4e-12 Score=107.96 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=65.6
Q ss_pred eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCCC---CeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006128 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSLK---SMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (660)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
.|.||||++ +|.||+|.+||++|.+||+|.+++|++.+++ +.+.++|+..++.. .....
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~-----------------~~~~~ 62 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFT-----------------DDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCC-----------------CCHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccc-----------------cccch
Confidence 489999998 7999999999999999999999999886543 47888888876531 12222
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006128 590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 638 (660)
Q Consensus 590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 638 (660)
.+.+.+.|++.++.. +.++..+.+++ .+++|+| +||++|-
T Consensus 63 ~~~l~~~i~~~l~~~----~gv~~~v~~v~----~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 63 LQALTREITRQLKDE----ILVTPRVKLVP----KGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHHH----HSSCCEEEEEC----TTCSCCC----CCCE
T ss_pred hhhhHHHHHHHHHHH----hCCccceEEEc----CCeecCC-CCCcchh
Confidence 333444444443311 12233466664 3678998 7999883
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.21 E-value=2.9e-11 Score=101.13 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=63.9
Q ss_pred eccCCeeEcCCCeeecchhHHHHHhcCcCcceEEEEecCC---CCeEEEEEEcChhhHHHHHHHCCCCCcHHHHhccHHH
Q 006128 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDIWVYGDSL---KSMLVAVVVPCEEDTKKWAYSNGHAGSFLELCSLVQL 589 (660)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
||.||+|++ +|.+++|.+||++|.+||+|.++++++.++ .+.+++++++ ++.. ..+.. ...++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~~~~~---~~~~l 66 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------TDDYG---RLQAL 66 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------CCCHH---HHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------ccchh---HHHHH
Confidence 899999998 799999999999999999999888766433 2478888888 4320 00000 12334
Q ss_pred HHHHHHHHHHHHHhCCCCCceeeeEEEEecCCCCCCCCccccccccchH
Q 006128 590 QNYILSELKNAAERNKLRGFEHIKGVILDPRPFDMERDLVTATLKKKRN 638 (660)
Q Consensus 590 ~~~~~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~P~t~~GKv~R~ 638 (660)
.+.+.+.+.+.+ .++ | .|.+++ .+++|+| +||++|.
T Consensus 67 ~~~i~~~l~~~~---~~~----~-~v~~v~----~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEI---LVT----P-RVKLVP----KGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHH---SSC----C-EEEEEC----TTCSCCC----CCCE
T ss_pred HHHHHHHHHHhh---CCc----e-EEEEEC----CCCccCC-CCceEEE
Confidence 445555443332 232 2 577764 2578999 9999874
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.69 E-value=5.9e-08 Score=104.02 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=88.4
Q ss_pred EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCe-eEEeeecCCCC-C--
Q 006128 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEMG-Y-- 457 (660)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~ivd~~~~~-~-- 457 (660)
+.+++.||- ......++..+ +.+++ .+|++||+- + ..+.... ..+...+. .+++. =...++.++.. .
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~-gi~~~p~-~~~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-F-GINLDPL-CKPEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-E-EECSCTT-SCGGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-e-eeccCCC-CCcccCceeecCCcEEEEEEeccccCCCcE
Confidence 555556662 44556666555 67777 899999953 2 2221111 11111221 12222 12333311111 1
Q ss_pred ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCCeeecch
Q 006128 458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE 530 (660)
Q Consensus 458 ---~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G~~v~~~ 530 (660)
..+..|+.+||+++..+ |.|. |++||+.+++. ..++.|.||.+++|.+ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 12235678999998752 3333 99999999875 4579999999999997 79999999
Q ss_pred hHHHHHhcCc--------CcceEEEEecC--CCCeEEEEEEcC
Q 006128 531 YLENVYCVAP--------IIEDIWVYGDS--LKSMLVAVVVPC 563 (660)
Q Consensus 531 ~iE~~l~~~p--------~V~~~~V~~~~--~~~~~~a~v~~~ 563 (660)
+||++|.+.- .|.|..++... .+...+.+.+++
T Consensus 439 ~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~Hy~~~wel~ 481 (581)
T 4eql_A 439 DLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481 (581)
T ss_dssp HHHHHHHHC--------------CEEEECSSSSBEEEEECC--
T ss_pred HHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCCeEEEEEEEe
Confidence 9999997432 24454444322 234566666554
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.58 E-value=6.8e-07 Score=95.94 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=91.1
Q ss_pred EeEEEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCe-eEEeeecCCC-----
Q 006128 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYS-ELRLEEVPEM----- 455 (660)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~ivd~~~~----- 455 (660)
+.+++.||- ......++..+ +.+++ .+|++||+- +.. +.... ..+...+. .+|+. =...++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~~~p~-~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGL-NLNPM-SKPSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEE-CSCTT-SCGGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eee-ecCCC-CCcccCceeecCCcEEEEEEeccccccccc
Confidence 444555552 44456666555 67776 899999963 222 21111 01111111 12222 1223331111
Q ss_pred -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCC
Q 006128 456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 523 (660)
Q Consensus 456 -~--~-----~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~ 523 (660)
. . ..+..|+.+||+|+.. .|.|. |++||+++++. ..++.|+||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 0 1233567899999764 35554 99999999873 4689999999999997 7
Q ss_pred CeeecchhHHHHHhcC------c--CcceEEEEecC--CCCeEEEEEEcC
Q 006128 524 GEYVALEYLENVYCVA------P--IIEDIWVYGDS--LKSMLVAVVVPC 563 (660)
Q Consensus 524 G~~v~~~~iE~~l~~~------p--~V~~~~V~~~~--~~~~~~a~v~~~ 563 (660)
|+++++.+||++|.+. . .|.|..++... .+...+.++++.
T Consensus 444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELL 493 (609)
T ss_dssp SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEe
Confidence 9999999999999631 2 34565554322 234666666654
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.41 E-value=1.7e-06 Score=92.48 Aligned_cols=159 Identities=18% Similarity=0.105 Sum_probs=92.4
Q ss_pred CcEeE--EEEccCCCCHHHHHHHHHhc-CCcee-eecCCCCCCCceecccCCCccccCccCC-CccCee-EEeeecCCCC
Q 006128 383 GRLRL--VISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAGP-VSVYSE-LRLEEVPEMG 456 (660)
Q Consensus 383 ~~lr~--i~~~G~~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~~-v~ivd~~~~~ 456 (660)
+++++ ++.+|.. ......++..+ +.+++ .+|++||+- +.. +.... ..++..+. .+|+.. ...++.++..
T Consensus 302 Pnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi-~~~p~-~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAA-NVTPR-LSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEE-EEE-CCCTT-SCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceecccee-eee-ecCCC-CCccccceeecCCcEEEEEEeccccc
Confidence 57763 3344432 44445666555 67777 899999963 222 21111 11111221 222221 1222211111
Q ss_pred -----C---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEECC----CCcEEEEeccCCeeEcCCC
Q 006128 457 -----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQG 524 (660)
Q Consensus 457 -----~---~~~~~~~~Gei~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~G~l~~~GR~~d~i~~~~G 524 (660)
. ..+..|+.+||+++..+ |.|. |++||+.+++. ..++.|.||.+++|++ .|
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G 439 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI 439 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence 0 12335678999998743 3333 99999999864 2479999999999998 79
Q ss_pred eeecchhHHHHHhc------Cc--CcceEEEEecC--CCCeEEEEEEcC
Q 006128 525 EYVALEYLENVYCV------AP--IIEDIWVYGDS--LKSMLVAVVVPC 563 (660)
Q Consensus 525 ~~v~~~~iE~~l~~------~p--~V~~~~V~~~~--~~~~~~a~v~~~ 563 (660)
+++++.+||++|.+ .. .|.|..++... .+...+.+.++.
T Consensus 440 e~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 440 DKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred eECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 99999999999963 22 45666665532 234666666664
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=87.16 E-value=2.7 Score=43.53 Aligned_cols=122 Identities=8% Similarity=-0.044 Sum_probs=87.7
Q ss_pred CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEecC
Q 006128 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (660)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl~ 132 (660)
+.++++.. ..|.+|.. ..+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 44554433 14545443 3689999999888888888888999999999888754 334556788899999988876
Q ss_pred CCCChhHHHHHHhcccceEEEEccchhhhhhccccc-----cccCccEEEEecC
Q 006128 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (660)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~ 181 (660)
+. ..+.+...|+..++.+++........+.+.... ....++.++.-..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 54 678888999999999999988877666443211 1345666666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=86.87 E-value=3.7 Score=42.59 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEec
Q 006128 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl 131 (660)
++.++++.. ..|.+|..+ .+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455554433 155555543 579999988888888888788999999999888864 33345678888999999887
Q ss_pred CCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006128 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
+.. +.+.+...|+..++.+++........+.+
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 654 78888899999999999988877665543
No 44
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=86.68 E-value=2.6 Score=43.69 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=79.8
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhCCCeEEec
Q 006128 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~--~e~~~~~lA~~~~G~~~vpl 131 (660)
++.++++.. ..|.+|.. ..+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+.++++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 455664433 14555543 3689999988888888888788999999999888863 33345678889999999887
Q ss_pred CCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006128 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
+.. +.+.+...|++.++.+++........+.+
T Consensus 167 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 167 GGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 654 78888999999999999998877665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.88 E-value=12 Score=39.22 Aligned_cols=120 Identities=8% Similarity=0.026 Sum_probs=83.5
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~-~~~~lA~~~~G~~~vpl 131 (660)
.|+.+|++.. ..|.+|.. ..+|.+.+...+..+.. ..++.++|++...+|-.-.+ +..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4667776554 14544443 36798888776665543 45889999999888876433 33467888899998887
Q ss_pred CCCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEec
Q 006128 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~ 180 (660)
+ ..+.+.+...++..++.+++........+..........++.++.-.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 5 46788999999999999999998877766554433333555555544
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=73.51 E-value=34 Score=36.20 Aligned_cols=121 Identities=7% Similarity=-0.074 Sum_probs=82.6
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhCCCeEE
Q 006128 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV 129 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~---~~lA~~~~G~~~v 129 (660)
.|+.+|++.. ..|.+|.. ..+|.+.+...+..+.. ..++.++|++...+|-+..+-. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4666766554 14444443 36899988776655543 3478899999888886644332 4788899999988
Q ss_pred ecCCCCChhHHHHHHhcccceEEEEccchhhhhhccc---cccccCccEEEEecC
Q 006128 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (660)
Q Consensus 130 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~i~~~~~ 181 (660)
..+ ..+.+.+...++..++.+++........+.... ...+..++.++.-..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 765 467888899999999999999887766554322 123456666665543
No 47
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=73.45 E-value=13 Score=37.29 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=71.2
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhCCCeEEe
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e--~~~~~lA~~~~G~~~vp 130 (660)
.++.++.+.. ..|.+|..+ .+|.+.+...+..++..+...|+.++|++..++|-+.. -....+++...|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455555543 145555443 57888888888777777777899999999999886332 23445555888996665
Q ss_pred cCCCCChh-----------------------HHHHHHhcccceEEEEccchhhhhhc
Q 006128 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 131 l~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
.+ .++. .+...+++.++.+++........+.+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 43 2333 66668899999999998887766544
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=71.45 E-value=19 Score=38.34 Aligned_cols=120 Identities=12% Similarity=-0.015 Sum_probs=80.4
Q ss_pred CCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhCCCeEEecC
Q 006128 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPLY 132 (660)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~--~~~lA~~~~G~~~vpl~ 132 (660)
+.+|++.. ..|.+|.. ..+|.+.+...+......+...++.++|++...+|-.-.+- ..+++.+ .|+.++.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66666544 14444432 46899988777665544333357889999888887664433 3356777 999988775
Q ss_pred CCCChhHHHHHHhcccceEEEEccchhhhhhcccc---ccccCccEEEEec
Q 006128 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFT 180 (660)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~i~~~~ 180 (660)
..+.+.+...++..++.+++........+..... .....++.++.-.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5678899999999999999998887776644321 1234555555544
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=68.93 E-value=24 Score=38.29 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=85.1
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~-~~~lA~~~~G~~~vpl 131 (660)
.|+.+|++.. ..|.+|..+ .+|.+.+...+. .....++.++|++...++-+.+.- ..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 3566766543 155555544 678877754332 222348899999999998876554 3478888999988876
Q ss_pred C-CCCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006128 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (660)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (660)
+ ...+++.+...+++.++.+++........+.+........++.+++-...
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 35678899999999999999998887776655444455677777766543
No 50
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=67.99 E-value=23 Score=35.28 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=68.5
Q ss_pred HhCCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhCCCeEE
Q 006128 53 QKYPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICV 129 (660)
Q Consensus 53 ~~~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~-~~~~lA~~~~G~~~v 129 (660)
+.+.|.+|++.. ..|.+|..+ .+|++.+...+..++. ..++.++|++...+|-+-.+ +..++..+..|+..+
T Consensus 33 ~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 334566666543 156566543 6899988776655544 34899999999888866433 344566677788777
Q ss_pred ecCCCCChhHHHHHHhcccceEEEEccchhhhhh
Q 006128 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (660)
Q Consensus 130 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 163 (660)
..++.... ...++..++.++.........+.
T Consensus 108 ~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 108 VTEPTANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp EECCCSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred ecCccccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 77654332 34678889999988877666554
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=67.54 E-value=38 Score=35.96 Aligned_cols=107 Identities=9% Similarity=-0.062 Sum_probs=78.0
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.++.+|++....+..+ -..-.+|.+.+...+..++..+... ++..+|++...++-+. -.....+.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 3677787665322111 1124688999988888887776543 7889999999988653 2233466778899998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 328 (660)
+. ....+...+++.++++++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 76 78999999999999999999887766543
No 52
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=66.24 E-value=28 Score=36.88 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.++.++++... +| -.+|.+.+...+..++..+... ++..+|++...++-+. -.....+.++..|+..+..
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 46777765432 22 4589999988888887776543 7889999999988763 2233466778889998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 328 (660)
.. ....+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 76 88999999999999999999877766544
No 53
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.64 E-value=32 Score=36.44 Aligned_cols=103 Identities=11% Similarity=-0.029 Sum_probs=72.9
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhCCCeEEe
Q 006128 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~---~~lA~~~~G~~~vp 130 (660)
++.+|++.. ..|.+|.. ..+|.+.+...+..++. ..++.++|++...+|-+..+-. .+++++..|+.++.
T Consensus 190 ~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 264 (544)
T 3o83_A 190 ADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264 (544)
T ss_dssp TTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred ccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEE
Confidence 566666544 14444443 36899988777666554 3488999999988886654433 47888899999887
Q ss_pred cCCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006128 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
.+. .....+...++..++.+++........+..
T Consensus 265 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 265 APN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 754 567888889999999999998876665543
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=64.81 E-value=29 Score=36.40 Aligned_cols=98 Identities=12% Similarity=-0.037 Sum_probs=75.6
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.+|++. ..-.+|.+.+...+..++..+... ++..+|++...++-+. -.....+.++..|+..+.+
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEec
Confidence 467777764 125689999999988888777543 7889999999988663 2233466778899998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 327 (660)
+. +...+...+++.++.+++..+.....+.
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 76 7889999999999999999887766543
No 55
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.70 E-value=40 Score=35.65 Aligned_cols=101 Identities=10% Similarity=-0.127 Sum_probs=74.7
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.++.++++....+ ..-.+|.+.+...+..++..+... ++..+|++...++-+. -.....+.++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEec
Confidence 3566776543211 235789999988888887766442 7889999999988663 2233456678889998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l 326 (660)
.. ....+...+++.++.+++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 76 788999999999999999988766544
No 56
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=64.67 E-value=12 Score=39.82 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC
Q 006128 220 FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG 299 (660)
Q Consensus 220 ~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~ 299 (660)
+.++++.+..+.++ ..+|.+.+...+..++..+... ++..+|++...++-+. -.....+.++..|+..+....
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCC
Confidence 44444433333333 4689999988888887776543 7889999999988653 223345667888999888775
Q ss_pred --ChhhHHHHhhhhcCeEEEechHHHHHHHH
Q 006128 300 --DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (660)
Q Consensus 300 --~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 328 (660)
....+...++..++++++........+..
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 138 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILN 138 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 88999999999999999999887766544
No 57
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=64.45 E-value=32 Score=36.24 Aligned_cols=102 Identities=7% Similarity=-0.086 Sum_probs=70.3
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH--HHHHHhCCCeEEec
Q 006128 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA--MEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~--~lA~~~~G~~~vpl 131 (660)
|+.+|++.. ..|.+|..+ .+|.+.+...+..++.. .++.++|++...+|-.-.+-.. +++++ .|+.++..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 455655443 145555433 68998887776665544 4899999999888876544332 45555 88888877
Q ss_pred CCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006128 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
+......+...+...++.++.........+..
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 45788899999999999999998877665543
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=61.98 E-value=33 Score=35.95 Aligned_cols=122 Identities=9% Similarity=-0.055 Sum_probs=79.9
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~-~~~~lA~~~~G~~~vpl 131 (660)
.++.+|++.. ..|.+|..+ .+|.+.+...+..... ..++.++|++...+|-+..+ +..+++++..|+.++.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3455665443 145444433 6888888766554443 45889999999988876443 34578889999998888
Q ss_pred CCC--CChhHHHHHHhcccceEEEEccchhhhhhcccc---ccccCccEEEEecC
Q 006128 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~i~~~~~ 181 (660)
+.. ..+..+...++..++.+++........+..... .....++.++.-..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 653 467788889999999999998887765543321 22345555555443
No 59
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=61.93 E-value=27 Score=37.29 Aligned_cols=121 Identities=10% Similarity=0.011 Sum_probs=83.7
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e-~~~~~lA~~~~G~~~vpl 131 (660)
.|+.+|++.. ..|.+|.. ..+|.+.+...... ....++.++|++...+|-+.+ ....+++.+..|+.++..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4666766554 14444433 36888877433221 223488999999988887643 445678888999988877
Q ss_pred CC-CCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecC
Q 006128 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 181 (660)
.. ...+..+...+++.++.++.........+.+........++.++.-..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 456778999999999999999888877776655555667777766654
No 60
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=61.70 E-value=54 Score=34.30 Aligned_cols=121 Identities=7% Similarity=-0.133 Sum_probs=81.6
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~-~~~lA~~~~G~~~vpl 131 (660)
.++.+|++.. ..|.+|..+ .+|.+.+...+..++. ..++.++|++...+|-+..+- ..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3456665543 155555544 6888888766655443 458899999999888775443 4578889999998877
Q ss_pred CCC--CChhHHHHHHhcccceEEEEccchhhhhhccc---cccccCccEEEEec
Q 006128 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFT 180 (660)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~i~~~~ 180 (660)
+.. ..+..+...++..++.+++........+.... ......++.++...
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 45678888999999999999888776654432 12234455555544
No 61
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=61.28 E-value=69 Score=34.49 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=80.8
Q ss_pred CCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhCCCeEEe
Q 006128 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICVP 130 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~--~~-~~lA~~~~G~~~vp 130 (660)
|+.+|++.. ..|.+|.. ..+|.+.+...+...... .++.++|++...+|-+..+ .. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 566666543 14544443 368998887766655443 4788999999988855433 32 47888889998887
Q ss_pred cCCCCChhHHHHHHhcccceEEEEccchhhhhhcccc-----ccccCccEEEEecC
Q 006128 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (660)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~ 181 (660)
.+. .....+...++..++.++.........+..... .....++.+++-..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 754 467788889999999999998877665543221 13455666666554
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=60.78 E-value=38 Score=36.19 Aligned_cols=104 Identities=4% Similarity=-0.153 Sum_probs=74.6
Q ss_pred CCCCCceeeeccccCCCCCc--eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhCCCeEEe
Q 006128 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~--~~lA~~~~G~~~vp 130 (660)
.|+.+|++.. ..|.+|.. ..+|.+.+...+..+.. ..++.++|++...+|-.-.+-. .+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4566776554 14544443 36899988877666544 4588999999999888765543 37888999999888
Q ss_pred cCCCC---ChhHHHHHHhcccceEEEEccchhhhhh
Q 006128 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELL 163 (660)
Q Consensus 131 l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 163 (660)
..+.. .+..+...++..++.++.........+.
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 76532 5677888899999999888776555443
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=57.89 E-value=66 Score=33.14 Aligned_cols=106 Identities=12% Similarity=-0.006 Sum_probs=76.6
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.+|++..............+|.+.+...+..++..+... +. .+|++...++-.. -.....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467888776543221112346799999999999888887554 34 8899998887663 2233456778899998877
Q ss_pred cC-----ChhhHHHHhhhhcCeEEEechHHHHHHH
Q 006128 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 327 (660)
.. ....+...+++.++.+++..+.....+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 53 4678899999999999999988766554
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=56.63 E-value=56 Score=34.13 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=71.0
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.++++... + +..+|.+.+...+..+...+... ++..+|++...++-+.- .....+.++..|+..+..
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEec
Confidence 45667766421 1 25689999998888887766543 78899999999886632 233466778899998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEe--chHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAG--VPRVFEK 325 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~--~p~~~~~ 325 (660)
+. ....+...+++.+++.++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 76 7889999999999999988 6554443
No 65
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=56.53 E-value=70 Score=34.03 Aligned_cols=121 Identities=12% Similarity=-0.044 Sum_probs=78.8
Q ss_pred CCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhCCCeEEec
Q 006128 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (660)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~--~~lA~~~~G~~~vpl 131 (660)
|+.+|++.. ..|.+|..+ .+|.+ +....... .....++.++|++...++-+..+-. .+++.+..|+..+..
T Consensus 205 ~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 205 SQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 556665543 145444433 67887 43311111 1234589999999888887755433 467888889988776
Q ss_pred CC-CCChhHHHHHHhcccceEEEEccchhhhhhcccc--ccccCccEEEEecC
Q 006128 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTS 181 (660)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 181 (660)
.. ..++..+...++..++.+++........+..... .....++.++....
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 53 6778899999999999999999887776654321 12345666665544
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=55.85 E-value=59 Score=35.49 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcc-cccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEE
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD-QFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGY 296 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~ 296 (660)
.++.+|++.... .+| ....+|.+.+...+..++..+. .. ++..+|++..++|... -....++.++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~--Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSM--GVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTS--CCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEe
Confidence 467788775432 122 2356899999988888877764 32 7889999999998763 223346777888998887
Q ss_pred ecC--ChhhHHHHhhhhcCeEEEechHH
Q 006128 297 YHG--DLNALRDDLMELKPTLLAGVPRV 322 (660)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~~~~~p~~ 322 (660)
... .+..+...+++.++.+++.....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 765 88999999999999999987653
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=54.86 E-value=62 Score=34.44 Aligned_cols=95 Identities=8% Similarity=-0.025 Sum_probs=71.3
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.++++.. .-.+|.+.+...+..+...+... ++..+|++...++-+. -.....+.++..|+..+.+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 4667776531 23689999988888877766433 7889999999988663 2233456778899998888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFE 324 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~ 324 (660)
.. ....+...+++.++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 76 7889999999999999999876544
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=54.41 E-value=42 Score=35.34 Aligned_cols=98 Identities=7% Similarity=-0.130 Sum_probs=73.6
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.++.++++.. | -.+|...+...+..+...+... ++..+|++...++-+.- .....+.++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEec
Confidence 4566776532 1 3589999988888887766433 68899999999886632 233456778889998887
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 327 (660)
.. ....+...+++.++..++..+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 75 7899999999999999999887765543
No 69
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=53.41 E-value=48 Score=32.61 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=49.3
Q ss_pred HHHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 92 ~L~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
.+.+.| +++|+.|.+....+=.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344555 588988755556666777788888888998777766655566677889999999999764
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=52.78 E-value=36 Score=35.61 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=67.1
Q ss_pred eecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEE
Q 006128 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (660)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~ 316 (660)
.+|.+.+...+..++..+... ++.++|++...++-+. -.....+.++..|+..+.++. ....+...+++.++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 589999988888887776543 7889999999988762 223346677889999888876 78999999999999999
Q ss_pred EechHHHHHH
Q 006128 317 AGVPRVFEKI 326 (660)
Q Consensus 317 ~~~p~~~~~l 326 (660)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765444
No 71
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=51.66 E-value=57 Score=34.87 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=74.0
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.+|++..... | ....+|.+.+......++..+... ++..+|++...++-..- .....+.++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~--Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKH--GIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeC
Confidence 5788888765431 2 246789999988888887777543 78899999999886632 223456678889998887
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRV 322 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~ 322 (660)
.. ....+...+++.++.+++..+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 65 88999999999999999986653
No 72
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=48.09 E-value=80 Score=34.29 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=72.3
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.++.+|++... ..+| ..-.+|.+.+...+..++..+... ++..+|++..++|...- ....++.++..|+..+.+
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~--Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDL--GIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEec
Confidence 35677776542 2222 235689999998888887766543 78899999999987632 233466778889998877
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPR 321 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~ 321 (660)
.. .+..+...+++.++.+++....
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 65 8899999999999999988654
No 73
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=46.04 E-value=1.1e+02 Score=27.71 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=36.8
Q ss_pred cEEEEecCh--hHHHHHHHH-HHHhhcCcEEEEecC--ChhhHHHHhhhhcCeEEEe
Q 006128 267 DVYLSFLPL--AHILDRVIE-EYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (660)
Q Consensus 267 ~~~l~~~pl--~~~~g~~~~-l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~ 318 (660)
.+++...+. .|..|..++ ...-..|..++.... +++.+.+.+.+++++.+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444443 377777664 444567888777654 8999999999999998777
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.46 E-value=79 Score=31.16 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=51.9
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 94 ~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
.+.| +++|.+..+....+=.-+.+.++|.++|..+..+-|...+......++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 688877677777777788889999999998888877777777888999999999998754
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=45.44 E-value=1.1e+02 Score=31.95 Aligned_cols=103 Identities=10% Similarity=-0.095 Sum_probs=71.4
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhCCCeEEe
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVP 130 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~--~~~~lA~~~~G~~~vp 130 (660)
.|+.+|++.. ..|.+|..+ .+|.+.+...+..++..+ ++.++|++...+|-.-.+ +..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4566666543 155555543 689999888777665544 788999988877764332 3357888899999887
Q ss_pred cCCCCChhHHHHHHhcccceEEEEccchhhhhhc
Q 006128 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (660)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (660)
.. ..+.+.+...+ ..++..++........+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 74 45666677777 6789999888877665543
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.81 E-value=72 Score=36.64 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=74.9
Q ss_pred CCCceEEEEecCCCCCCCceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEe
Q 006128 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~ 297 (660)
.|+.++++... +| -.+|.+.+...+..+...+... ++.++|++..+++-+. -.....+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 46778876422 22 4689999988888887766543 7889999999988762 2233466778899999888
Q ss_pred cC--ChhhHHHHhhhhcCeEEEechHHHHHH
Q 006128 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (660)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~p~~~~~l 326 (660)
.. .+..+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 76 889999999999999999987765544
No 77
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=40.25 E-value=60 Score=38.73 Aligned_cols=122 Identities=9% Similarity=-0.040 Sum_probs=83.7
Q ss_pred CCCCCceeeeccccCCCCCce--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH-HHHHHHhCCCeEEec
Q 006128 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE-AMEACNALSLICVPL 131 (660)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~-~~lA~~~~G~~~vpl 131 (660)
.|+.+|++.. ..|.+|..+ .+|.+.+... .......++.++|++..+.+-+.+..+ -+++.+..|+.++..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4666766543 155555544 6888877532 122223488999999988887766544 478888999988877
Q ss_pred CC--CCChhHHHHHHhcccceEEEEccchhhhhhccccccccCccEEEEecCC
Q 006128 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (660)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 182 (660)
++ ..++..+...+...++.+++........+..........++.+++-...
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 65 3567889999999999999998887776654333334566777666543
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=37.33 E-value=1e+02 Score=32.11 Aligned_cols=81 Identities=11% Similarity=0.015 Sum_probs=62.1
Q ss_pred eeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--ChhhHHHHhhhhcCeE
Q 006128 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (660)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 315 (660)
-.+|.+.+...+..++..+... ++..++++...++-.. -.....+.++..|+..+.+.. ....+...++..++++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 3579999988888887766443 6788999988887653 223345667888999887765 7889999999999999
Q ss_pred EEechH
Q 006128 316 LAGVPR 321 (660)
Q Consensus 316 ~~~~p~ 321 (660)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 79
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=34.80 E-value=1.5e+02 Score=28.83 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=52.5
Q ss_pred EeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEE
Q 006128 77 KTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~ql~~~v~~lA---~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 153 (660)
+++.+......... ..|...++++||+|+|+..-+.-..++++|....|+.++.++.. .+. ..+++..+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 67776544433332 23445589999999999887777788888887778877776553 333 4567778888777
Q ss_pred Ec
Q 006128 154 VQ 155 (660)
Q Consensus 154 ~~ 155 (660)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 80
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=31.54 E-value=2.1e+02 Score=29.97 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=69.6
Q ss_pred CCCceEEEEecCCCCCCC--ceeeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEE
Q 006128 218 QPFNICTIMYTSGTSGDP--KGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVG 295 (660)
Q Consensus 218 ~~~~~~~i~~TSGTTG~p--K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v 295 (660)
.|+.++++...+ ..+.. ..-.+|.+.+...+..++..+... +. .+|++...++-+.- .....+.++..|+..+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSLI-AFAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCHH-HHHHHHHHHHTTCEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEE
Confidence 467788765432 22222 235789999998888887766543 45 68999998887632 2334667788899988
Q ss_pred EecC--ChhhHHHHhhhhcCeEEEechH
Q 006128 296 YYHG--DLNALRDDLMELKPTLLAGVPR 321 (660)
Q Consensus 296 ~~~~--~~~~~~~~i~~~~~t~~~~~p~ 321 (660)
.+.. ....+...+++.++.+++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 8875 7889999999999998887643
No 81
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=30.60 E-value=1.8e+02 Score=28.05 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=44.9
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 94 ~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4555 566754444455566666777888899998777666555556677889999999998754
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=30.46 E-value=1.7e+02 Score=29.69 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006128 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 94 ~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (660)
.+.| +++|....+....+=.-..+.++|.+.|..++.+-|......-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 57776555556667677778888999999887776666666777889999999999974
No 83
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=30.06 E-value=1.8e+02 Score=30.64 Aligned_cols=87 Identities=9% Similarity=-0.122 Sum_probs=66.9
Q ss_pred eeecchhHHHHhhhhhhhcccccCCCCCCcEEEEecChhHHHHHHHHHHHhhcCcEEEEecC--C-------hhhHHHHh
Q 006128 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--D-------LNALRDDL 308 (660)
Q Consensus 238 v~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~l~~l~~G~~~v~~~~--~-------~~~~~~~i 308 (660)
-.+|.+.+...+..+...+... ++..+|++...++-+. -.....+.++..|+..+.... . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5789999998888887776543 6889999999988763 223346677889999888764 2 57888899
Q ss_pred hhhcCeEEEechHHHHHHH
Q 006128 309 MELKPTLLAGVPRVFEKIH 327 (660)
Q Consensus 309 ~~~~~t~~~~~p~~~~~l~ 327 (660)
+..++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999999887665543
No 84
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=29.68 E-value=2e+02 Score=27.58 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=44.3
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
+.+.| +++|+.|+. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34455 467776655 44455556667777899998777665554555667788999999998863
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=28.80 E-value=2.1e+02 Score=27.36 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=44.1
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
+.+.| +++|+.|+. ...+=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 467766554 55555556677788889998776655544455666789999999998764
No 86
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.31 E-value=76 Score=31.02 Aligned_cols=61 Identities=7% Similarity=0.014 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEeCCch------hHHHHHHH-HHhCCCeEEecCCCC------------ChhHHHHHHhcccceEEEEccc
Q 006128 97 GAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~------e~~~~~lA-~~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
-+++||+|+|++|.+. +-+-.... +-..|..++.-..-. .++++..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 5899999999999852 22222222 234677766542211 2346777788888888888653
No 87
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=27.64 E-value=1.6e+02 Score=27.72 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 006128 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (660)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~ 114 (660)
.++++..+..|+..++.+. |...-++-..|..++.+.+.+.+..|.+.|++ ..++.=|+...
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~ 80 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATA 80 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccH
Confidence 3566667789999999888 87777888899999999999999999998774 44444455554
No 88
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=27.37 E-value=1.7e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=24.0
Q ss_pred chhHHHHHhcCcCcceEEEEecCCCCeEEEEEEcCh
Q 006128 529 LEYLENVYCVAPIIEDIWVYGDSLKSMLVAVVVPCE 564 (660)
Q Consensus 529 ~~~iE~~l~~~p~V~~~~V~~~~~~~~~~a~v~~~~ 564 (660)
..++++.|.++|.|.+|..+..+ .+.++-+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~ 49 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTL 49 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSH
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCH
Confidence 37899999999999999987532 344444444333
No 89
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.81 E-value=84 Score=30.85 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHHH-hCCCeEEecCCCC------------ChhHHHHHHhcccceEEEEccc
Q 006128 97 GAEPGCRVGIYGANCPQ------WVEAMEACN-ALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~e------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-.... ..+++..++.+-.+++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999999832 222223323 4688776532111 1235777777788888888654
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=26.51 E-value=2e+02 Score=28.13 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 94 ~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
.+.| +++|+.|+..+. +=.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 477776655543 54555666777889987776655545556677889999999998763
No 91
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=25.73 E-value=4.9e+02 Score=25.93 Aligned_cols=15 Identities=7% Similarity=-0.117 Sum_probs=8.6
Q ss_pred CCCCCCCceeccccC
Q 006128 17 GKPSVGPVYRNLLAS 31 (660)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (660)
..+-..|+|++..+-
T Consensus 41 ~~~~~~pi~~s~t~~ 55 (414)
T 3ndn_A 41 FEETAEAMYLTSGYV 55 (414)
T ss_dssp TCBSSCCBCCCSBBC
T ss_pred CCCcCCCcccCCcee
Confidence 445556777765543
No 92
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.70 E-value=1.4e+02 Score=21.76 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=34.4
Q ss_pred eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCe
Q 006128 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (660)
Q Consensus 75 ~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~ 127 (660)
..+.+.++.+. +.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 45677776543 44446788899999999998887777777888864
No 93
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=24.65 E-value=1.6e+02 Score=29.21 Aligned_cols=59 Identities=8% Similarity=-0.093 Sum_probs=37.7
Q ss_pred HHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCC-----CCChhHHHHHHhccc--ceEEEE
Q 006128 93 LRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD-----TLGPGAVNFILDHAE--IDFVFV 154 (660)
Q Consensus 93 L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~~l~~~~--~~~ii~ 154 (660)
|...++++||.|++-.+...-+ .-++...|+.++.++. ..+.+.+...+..-+ .++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 4445788999988776654443 3455678987776653 236677777774334 676664
No 94
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=24.48 E-value=2.8e+02 Score=26.37 Aligned_cols=63 Identities=8% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006128 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 93 L~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (660)
+.+.| +++|+.|+..+ .+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 33445 46777666655 35555566777789999877766655555666788999999999986
No 95
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=24.24 E-value=98 Score=30.86 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEeCCch------hHHHHHHHH-HhCCCeEEecCCCC------------ChhHHHHHHhcccceEEEEccc
Q 006128 97 GAEPGCRVGIYGANCP------QWVEAMEAC-NALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~------e~~~~~lA~-~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
-+++||+|+|++|.+. +-+-..... -..|..++.-.... .+++|..++.+-.+++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 6899999999999874 222222322 34788776542211 2245777777788888888654
No 96
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=23.57 E-value=3e+02 Score=26.17 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=42.9
Q ss_pred HHHcC-CCCCC--EEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 93 LRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 93 L~~~G-l~~gd--~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
+.+.| +++|+ .|+. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 56776 4433 34444455667778899997776655544556667888999999998764
No 97
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=23.48 E-value=1e+02 Score=30.24 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHHH-hCCCeEEecCCCC------------ChhHHHHHHhcccceEEEEccc
Q 006128 97 GAEPGCRVGIYGANCPQ------WVEAMEACN-ALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~e------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-.... ..+++..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999998742 222223323 4688776543111 2245777777788888888654
No 98
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=21.83 E-value=2.6e+02 Score=29.29 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=45.8
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006128 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 94 ~~~G-l~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (660)
.+.| +++|++|+. ...+=.-..+.++|...|..++.+-|......-...++..+++++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3445 678887755 4445555667778888899887776666566677888999999999875
No 99
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=21.75 E-value=2.4e+02 Score=27.64 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHHH--cCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEcc
Q 006128 92 ALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (660)
Q Consensus 92 ~L~~--~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (660)
.|.+ .++++|++|+|...-.+-.+++.+|-...|+.++.++.. .+. ..+++..+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--EEK-LKLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--HHH-HHHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--HHH-HHHHHHhCCCEEEecc
Confidence 3455 689999999999986677777777775548876666542 333 3455678888877543
No 100
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.12 E-value=2.6e+02 Score=24.84 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=43.7
Q ss_pred CCEEEEEeCCc----hhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 101 GCRVGIYGANC----PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 101 gd~V~l~~~n~----~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
+-+|.+.+..+ +-..++...+-..|.-++.+....+.+++...++..++++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 33677776654 3334445555688999999999999999999999999999988664
No 101
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=20.97 E-value=1.9e+02 Score=23.18 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cccCCCCCCCCCCCCcHHHHHHHHHHhCCCCCceeeeccccCCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 006128 28 LLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIY 107 (660)
Q Consensus 28 ~~~~~~~~~~~~~~~ti~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~ql~~~v~~lA~~L~~~Gl~~gd~V~l~ 107 (660)
..|..|-....+......+.+....+.+|+....+..+ .+..+ ...+-|.==.+|+..++.+|.+.|+...+++.+.
T Consensus 19 i~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Gh--tD~~g-~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~ 95 (123)
T 3oon_A 19 IEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGH--TEQFG-LEEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123)
T ss_dssp EEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEEC--CCSCC-CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEE--eCCCC-ChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEE
Confidence 34455555555566666667777777889854444431 22212 1223333335789999999999999745566554
Q ss_pred e
Q 006128 108 G 108 (660)
Q Consensus 108 ~ 108 (660)
.
T Consensus 96 g 96 (123)
T 3oon_A 96 G 96 (123)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.96 E-value=2.2e+02 Score=27.65 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=46.7
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEE
Q 006128 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~ql~~~v~~l---A~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 153 (660)
+++.+........ -..|.+.++++|++|+|...-++-.+++.+|- ..|+.++.+... .+.+ .+++..+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKK-QDALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTH-HHHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHH-HHHHhcCCCeec
Confidence 5666654222221 13355568999999999987556667666665 568877666543 2333 355678888887
No 103
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=20.74 E-value=2.3e+02 Score=27.39 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=48.6
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEE
Q 006128 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (660)
Q Consensus 77 ~Ty~ql~~~v~~l---A~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii 153 (660)
+++.+........ -..|...++++|++|+|...-++-.+++.+|- ..|+.++.++.+ .+. ..+++..+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDID--DAK-LNLARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--HHH-HHHHHHcCCCEEE
Confidence 6676654322221 23344558999999999887666777777666 468877666542 344 3456778888877
Q ss_pred Ecc
Q 006128 154 VQD 156 (660)
Q Consensus 154 ~~~ 156 (660)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 104
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=20.51 E-value=3.8e+02 Score=23.05 Aligned_cols=89 Identities=7% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHH---HHhcccceEEEEccchhhh
Q 006128 85 EVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNF---ILDHAEIDFVFVQDKKVKE 161 (660)
Q Consensus 85 ~v~~lA~~L~~~Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~---~l~~~~~~~ii~~~~~~~~ 161 (660)
+...+...|.+.+ ++..++|+++..-..-.+.-.+...|..+..++...+..+... .++.-+.+++|+.+....-
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 4455666666643 5678889888765554444455567888888888776654333 3445567788776543221
Q ss_pred hhccccccccCccEEEEecC
Q 006128 162 LLSPDCRSAQRLRVMVCFTS 181 (660)
Q Consensus 162 ~~~~~~~~~~~~~~i~~~~~ 181 (660)
+ ..+....++..+.
T Consensus 110 l------di~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 L------DISNVKHVINFDL 123 (185)
T ss_dssp -------CCCSBSEEEESSC
T ss_pred C------CcccCCEEEEeCC
Confidence 1 2345556666553
No 105
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=20.21 E-value=2.3e+02 Score=27.48 Aligned_cols=58 Identities=9% Similarity=-0.051 Sum_probs=42.6
Q ss_pred CCCCCCEEEEEeCCchhHHHHHHHHHhCCCeEEecCCCCChhHHHHHHhcccceEEEEccc
Q 006128 97 GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (660)
Q Consensus 97 Gl~~gd~V~l~~~n~~e~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (660)
++++|++|+|...-.+-.+++.+|-..-|+.++.++.. .+. ..+++..+++.++...+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~-~~~~~~lGa~~~i~~~~ 225 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDR-LALAREVGADAAVKSGA 225 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHH-HHHHHHTTCSEEEECST
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHH-HHHHHHcCCCEEEcCCC
Confidence 78999999999886678888888877657776666543 333 44667889988776543
Done!