BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006131
         (660 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53094|MDS3_YEAST Negative regulator of sporulation MDS3 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=MDS3 PE=1 SV=2
          Length = 1487

 Score = 40.4 bits (93), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 109 PHVASDFRNHSTSIDSHVNEKGFESIYIQGGLN-----VKPLVIEN------GNEVVKED 157
           P +A  F NH+  + +  N+     + I GGLN     VK + I N       +E + + 
Sbjct: 211 PQIARRF-NHTMHVKNENNDNRDTKLIIVGGLNNMDQPVKKIDIYNISQNCWQSETIPKQ 269

Query: 158 GSRVQVNGSGVNLDILKDLNENVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNP 217
              +  N +G+ L + KD N ++  E+  +N+   A+ +  D +  Y G     +  N+P
Sbjct: 270 PMEITTNVNGIPLALSKDQNFSILVENNEANVPALAFYMRSDQIDEYLGKDSSKIKENSP 329

Query: 218 ADKQPLNYDQVFIRDFVPSALAF 240
               PL  +   IR  +PS  A 
Sbjct: 330 IVALPLLSESQGIR--MPSNPAL 350


>sp|A6WVR3|UREE_OCHA4 Urease accessory protein UreE OS=Ochrobactrum anthropi (strain ATCC
           49188 / DSM 6882 / NCTC 12168) GN=ureE PE=3 SV=1
          Length = 170

 Score = 32.7 bits (73), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 13/105 (12%)

Query: 132 ESIYIQGGLNV-----KPLVIENGNEVVKEDGSRVQVNGSGVNLDILK--------DLNE 178
           ++I ++GG  V     +P+V+E+G+ +V +DG  +++  +   L  ++        +L  
Sbjct: 34  KAIVLEGGEKVLVDFAEPIVLEHGDRLVLDDGREIEIRAASEELYEIRGRDPLHIAELTW 93

Query: 179 NVETESEASNIEKEAWKLLRDAVVNYCGNPVGTVAANNPADKQPL 223
           ++     A+ IE +   +LRD V+      +G    +  A   PL
Sbjct: 94  HIGNRHLAAQIESDRIFILRDHVIKAMLEGLGATVTDVTAIFSPL 138


>sp|A8MM16|SUCC_ALKOO Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus
           oremlandii (strain OhILAs) GN=sucC PE=3 SV=1
          Length = 386

 Score = 32.7 bits (73), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 5/52 (9%)

Query: 140 LNVKPLVIENGNEVVKEDGSRVQVNGSGV--NLDILK--DLNENVETESEAS 187
           L + PLVI   N V+  D +++  +G+G+  N D+LK  DLNE  E E EAS
Sbjct: 196 LEINPLVITKNNRVMALD-AKINFDGNGLYRNEDVLKLRDLNEEDEKEIEAS 246


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,189,993
Number of Sequences: 539616
Number of extensions: 11695119
Number of successful extensions: 25580
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 25578
Number of HSP's gapped (non-prelim): 9
length of query: 660
length of database: 191,569,459
effective HSP length: 124
effective length of query: 536
effective length of database: 124,657,075
effective search space: 66816192200
effective search space used: 66816192200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)