BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006138
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
Prestin (Anion Transporter Slc26a5)
Length = 143
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 495 PRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARWVXXXXX 554
P +VLG +P++ +Y +I+ Y + G+ I +I+APIY+AN+ + R
Sbjct: 2 PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKR------- 54
Query: 555 XXXXXXXXXXHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDK 614
H VILD V +D+ G+ L + K + + LA A+V L
Sbjct: 55 KTGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTS 114
Query: 615 SKFIENMG-QEWIYLTVGEAVTACNFR 640
++F EN +E ++ ++ +AV R
Sbjct: 115 NRFFENPALKELLFHSIHDAVLGSQVR 141
>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
Tuberculosis
Length = 130
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 511 NIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARWVXXXXXXXXXXXXXXXHYVILD 570
+I+ YP A V G+++ + DAP+ FANA R R V + +L+
Sbjct: 3 DIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVV--------DQDPGQVEWFVLN 54
Query: 571 MGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTV 630
+ +D + + L++++ L RR + +A ++ + L + ++ +G++ I++T+
Sbjct: 55 AESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTL 114
Query: 631 GEAVTA 636
AV A
Sbjct: 115 PTAVQA 120
>pdb|3MGL|A Chain A, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|3MGL|B Chain B, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|4DGH|A Chain A, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
pdb|4DGH|B Chain B, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
Length = 130
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 42/70 (60%)
Query: 567 VILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWI 626
+IL + V D +GI LEE ++ +R +K++++ + V++KL K+ ++ +G++ +
Sbjct: 52 LILRLKWVPFXDITGIQTLEEXIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNV 111
Query: 627 YLTVGEAVTA 636
Y A++A
Sbjct: 112 YPVFEGALSA 121
>pdb|3OIR|A Chain A, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|3OIR|B Chain B, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|4DGF|A Chain A, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
pdb|4DGF|B Chain B, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
Length = 135
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 523 GVLILKIDAPIYFANASYLRERIARWVXXXXXXXXXXXXXXXHYVILDMGAVGNIDTSGI 582
GV I +I+ P +F A L+ IL V ID +G
Sbjct: 23 GVEIYEINGPFFFGVADRLK------------GVLDVIEETPKVFILRXRRVPVIDATGX 70
Query: 583 SMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLH 642
L E +++ ++R L+L+ + L++ FIE +G+E ++ + +A+ +
Sbjct: 71 HALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVE 130
Query: 643 TCE 645
T E
Sbjct: 131 TAE 133
>pdb|2OOF|A Chain A, The Crystal Structure Of 4-imidazolone-5-propanoate
Amidohydrolase From Environmental Sample
pdb|2Q09|A Chain A, Crystal Structure Of Imidazolonepropionase From
Environmental Sample With Bound Inhibitor
3-(2,5-Dioxo-Imidazolidin-4-Yl)-Propionic Acid
Length = 416
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 29/126 (23%)
Query: 98 IPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNY 157
+P + K LPP++ L + VP V S D+ GT + SL A
Sbjct: 287 LPTAFYFLKETKLPPVVALRKAGVPXAV------SSDINPGTAPIVSLRXAX-------- 332
Query: 158 NENPKLYLHLAFTATFFAGVF---------QASLGLLRLGFIVDFL----SHAAIVGFMG 204
N L AGV Q LG LR+G + DFL H A + ++
Sbjct: 333 --NXACTLFGLTPVEAXAGVTRHAARALGEQEQLGQLRVGXLADFLVWNCGHPAELSYLI 390
Query: 205 GAATVV 210
G +V
Sbjct: 391 GVDQLV 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,999,693
Number of Sequences: 62578
Number of extensions: 703086
Number of successful extensions: 1955
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 5
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)