Query 006138
Match_columns 659
No_of_seqs 374 out of 2313
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 18:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 1E-107 3E-112 923.7 45.3 622 20-646 14-652 (665)
2 TIGR00815 sulP high affinity s 100.0 3E-100 6E-105 861.6 57.6 560 70-633 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 3.4E-92 7.3E-97 782.0 53.7 547 65-642 3-552 (554)
4 PRK11660 putative transporter; 100.0 4.8E-91 1E-95 786.6 55.4 523 74-640 20-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 1.7E-47 3.7E-52 397.5 17.7 279 182-460 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 1.2E-26 2.7E-31 252.9 32.7 323 93-457 10-352 (406)
7 PRK10720 uracil transporter; P 100.0 1.6E-25 3.5E-30 244.0 33.6 359 94-496 30-414 (428)
8 TIGR00801 ncs2 uracil-xanthine 99.9 3.2E-25 7E-30 241.6 30.9 335 92-464 19-378 (415)
9 COG2252 Xanthine/uracil/vitami 99.9 4.9E-24 1.1E-28 225.2 31.7 372 79-490 15-406 (436)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.3E-25 2.8E-30 186.0 7.7 83 69-151 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 5.7E-22 1.2E-26 216.0 33.2 329 83-450 29-372 (429)
12 PRK11412 putative uracil/xanth 99.9 2.8E-20 6.1E-25 201.4 31.7 339 92-456 22-373 (433)
13 COG2233 UraA Xanthine/uracil p 99.9 7.7E-21 1.7E-25 202.6 26.7 311 114-454 57-376 (451)
14 PF00860 Xan_ur_permease: Perm 99.8 2.2E-19 4.9E-24 194.7 26.9 346 84-455 1-364 (389)
15 PF01740 STAS: STAS domain; I 99.7 1.6E-18 3.6E-23 155.7 7.4 117 515-633 1-117 (117)
16 TIGR00834 ae anion exchange pr 99.7 1.3E-14 2.8E-19 166.6 29.4 349 87-444 372-792 (900)
17 TIGR02886 spore_II_AA anti-sig 99.7 1.2E-16 2.6E-21 140.9 10.0 102 520-634 5-106 (106)
18 cd07041 STAS_RsbR_RsbS_like Su 99.7 3.4E-16 7.4E-21 138.7 10.8 102 521-634 8-109 (109)
19 KOG1172 Na+-independent Cl/HCO 99.7 8.5E-14 1.8E-18 155.8 29.8 336 101-444 377-768 (876)
20 cd06844 STAS Sulphate Transpor 99.6 4E-15 8.6E-20 129.7 9.7 92 520-621 5-96 (100)
21 TIGR00843 benE benzoate transp 99.6 8.9E-13 1.9E-17 139.8 28.7 342 85-484 22-392 (395)
22 TIGR00377 ant_ant_sig anti-ant 99.4 2.7E-13 5.8E-18 119.8 8.7 100 520-632 9-108 (108)
23 cd07042 STAS_SulP_like_sulfate 99.4 1.5E-12 3.3E-17 114.4 11.9 101 519-628 5-105 (107)
24 PF03594 BenE: Benzoate membra 99.4 4E-10 8.6E-15 117.6 29.9 274 165-485 87-377 (378)
25 PF00955 HCO3_cotransp: HCO3- 99.3 2.4E-13 5.2E-18 148.9 0.9 350 89-446 38-475 (510)
26 cd07043 STAS_anti-anti-sigma_f 99.3 1.5E-11 3.3E-16 106.4 9.9 90 521-621 6-95 (99)
27 COG1366 SpoIIAA Anti-anti-sigm 99.2 4.8E-11 1E-15 107.1 10.3 99 524-635 14-112 (117)
28 KOG1292 Xanthine/uracil transp 99.2 2.1E-09 4.5E-14 113.9 20.4 306 114-447 54-395 (510)
29 PF13466 STAS_2: STAS domain 99.0 6E-10 1.3E-14 92.7 7.9 79 527-617 1-79 (80)
30 COG3135 BenE Uncharacterized p 98.9 4.2E-07 9.1E-12 93.0 24.5 273 165-484 102-391 (402)
31 PF11840 DUF3360: Protein of u 98.3 0.00035 7.5E-09 72.2 24.7 250 169-456 145-418 (492)
32 COG3113 Predicted NTP binding 97.6 0.00019 4E-09 60.4 7.3 84 526-621 13-96 (99)
33 TIGR00801 ncs2 uracil-xanthine 93.8 0.29 6.4E-06 53.8 9.6 43 367-409 273-315 (415)
34 PF11964 SpoIIAA-like: SpoIIAA 93.3 0.051 1.1E-06 47.5 2.2 106 523-639 1-109 (109)
35 PF13344 Hydrolase_6: Haloacid 91.9 0.3 6.4E-06 42.4 5.1 72 567-640 1-77 (101)
36 TIGR00815 sulP high affinity s 89.9 10 0.00022 43.6 16.6 111 326-442 14-142 (563)
37 TIGR03173 pbuX xanthine permea 89.7 13 0.00028 40.8 16.6 97 92-205 226-332 (406)
38 COG0659 SUL1 Sulfate permease 89.1 6.4 0.00014 44.9 13.9 108 329-442 24-143 (554)
39 PRK11412 putative uracil/xanth 88.9 11 0.00023 41.7 15.1 118 87-221 242-370 (433)
40 PRK10720 uracil transporter; P 88.8 1.9 4.2E-05 47.6 9.3 104 311-415 209-312 (428)
41 PF14213 DUF4325: Domain of un 88.8 2.7 5.9E-05 34.0 7.9 66 537-614 2-70 (74)
42 KOG3040 Predicted sugar phosph 88.4 0.68 1.5E-05 44.9 4.6 76 563-640 6-86 (262)
43 PRK09928 choline transport pro 80.3 1.3E+02 0.0027 35.3 20.0 48 540-603 528-575 (679)
44 PF09345 DUF1987: Domain of un 77.1 9.1 0.0002 33.0 6.6 69 525-601 10-81 (99)
45 PRK11660 putative transporter; 76.1 57 0.0012 37.5 14.9 109 326-440 29-146 (568)
46 COG1296 AzlC Predicted branche 73.9 1E+02 0.0023 31.1 14.7 53 80-137 9-64 (238)
47 COG5439 Uncharacterized conser 73.3 6 0.00013 33.2 4.2 42 563-604 45-87 (112)
48 COG2233 UraA Xanthine/uracil p 72.8 12 0.00026 41.3 7.7 133 279-415 197-332 (451)
49 PF00860 Xan_ur_permease: Perm 71.1 7.5 0.00016 42.4 5.9 109 311-419 213-323 (389)
50 TIGR03616 RutG pyrimidine util 71.0 23 0.0005 39.1 9.7 87 113-217 283-371 (429)
51 PRK10444 UMP phosphatase; Prov 69.3 11 0.00023 38.4 6.1 73 565-639 2-79 (248)
52 TIGR01452 PGP_euk phosphoglyco 68.5 9.6 0.00021 39.4 5.8 74 564-639 2-80 (279)
53 PF13788 DUF4180: Domain of un 68.2 67 0.0015 28.4 9.9 101 522-637 4-113 (113)
54 PRK02261 methylaspartate mutas 64.9 24 0.00052 32.4 6.9 73 563-643 54-136 (137)
55 KOG2882 p-Nitrophenyl phosphat 64.9 18 0.00039 37.4 6.6 78 563-641 21-103 (306)
56 TIGR01458 HAD-SF-IIA-hyp3 HAD- 64.3 11 0.00024 38.4 5.2 73 565-639 2-83 (257)
57 PLN02645 phosphoglycolate phos 60.9 29 0.00064 36.5 7.8 73 564-638 28-105 (311)
58 PF00916 Sulfate_transp: Sulfa 59.6 79 0.0017 32.4 10.7 98 322-419 146-243 (280)
59 TIGR01457 HAD-SF-IIA-hyp2 HAD- 57.1 21 0.00046 36.2 5.7 74 565-640 2-80 (249)
60 TIGR01684 viral_ppase viral ph 56.9 27 0.00059 36.3 6.3 60 562-621 124-189 (301)
61 TIGR00640 acid_CoA_mut_C methy 54.9 37 0.00081 30.9 6.3 71 563-641 53-127 (132)
62 cd02071 MM_CoA_mut_B12_BD meth 52.3 58 0.0013 29.0 7.1 68 563-638 50-121 (122)
63 COG0647 NagD Predicted sugar p 50.9 37 0.0008 35.0 6.2 79 563-642 7-90 (269)
64 TIGR00843 benE benzoate transp 50.5 1.4E+02 0.003 32.6 10.7 103 329-434 23-142 (395)
65 COG0573 PstC ABC-type phosphat 50.5 3.3E+02 0.0071 28.7 15.5 60 71-130 63-138 (310)
66 TIGR01459 HAD-SF-IIA-hyp4 HAD- 50.4 36 0.00079 34.2 6.2 74 563-638 7-85 (242)
67 TIGR01501 MthylAspMutase methy 48.0 47 0.001 30.3 5.8 64 576-642 60-133 (134)
68 PHA00736 hypothetical protein 47.9 92 0.002 24.3 6.3 49 100-148 3-52 (79)
69 COG0786 GltS Na+/glutamate sym 47.8 49 0.0011 35.6 6.7 43 169-211 7-53 (404)
70 COG1137 YhbG ABC-type (unclass 47.5 65 0.0014 31.7 6.8 57 562-621 156-212 (243)
71 cd07019 S49_SppA_1 Signal pept 46.1 75 0.0016 31.3 7.5 66 523-599 1-73 (211)
72 COG4618 ArpD ABC-type protease 46.0 57 0.0012 36.5 7.0 76 562-639 489-564 (580)
73 COG2271 UhpC Sugar phosphate p 45.8 1.7E+02 0.0038 32.2 10.5 36 344-379 76-115 (448)
74 cd07023 S49_Sppa_N_C Signal pe 44.2 1E+02 0.0022 30.2 8.1 65 524-599 2-69 (208)
75 PRK03659 glutathione-regulated 44.0 3.2E+02 0.0068 31.7 13.2 77 538-639 408-484 (601)
76 TIGR00706 SppA_dom signal pept 40.8 1E+02 0.0023 30.2 7.5 58 524-593 2-59 (207)
77 PRK10669 putative cation:proto 40.5 5.6E+02 0.012 29.3 14.5 59 536-619 423-481 (558)
78 COG0244 RplJ Ribosomal protein 40.4 1.4E+02 0.0031 28.5 8.1 68 564-638 23-94 (175)
79 TIGR00822 EII-Sor PTS system, 38.6 4.6E+02 0.0099 27.0 15.5 29 183-211 162-190 (265)
80 cd00394 Clp_protease_like Case 38.3 67 0.0015 29.9 5.6 57 526-593 1-57 (161)
81 PHA03398 viral phosphatase sup 37.4 80 0.0017 33.0 6.2 60 562-621 126-191 (303)
82 cd07022 S49_Sppa_36K_type Sign 37.2 1.2E+02 0.0026 29.8 7.4 32 562-594 41-72 (214)
83 COG1433 Uncharacterized conser 37.0 1E+02 0.0022 27.7 6.0 49 588-639 57-106 (121)
84 PRK11475 DNA-binding transcrip 37.0 96 0.0021 30.5 6.6 59 563-623 37-98 (207)
85 COG1121 ZnuC ABC-type Mn/Zn tr 35.9 84 0.0018 32.0 6.0 43 562-605 156-198 (254)
86 PF04206 MtrE: Tetrahydrometha 35.4 3.2E+02 0.0069 27.4 9.5 89 107-211 51-143 (269)
87 PF03609 EII-Sor: PTS system s 32.9 2.8E+02 0.006 28.0 9.2 23 187-209 167-189 (238)
88 PF06800 Sugar_transport: Suga 32.7 5.3E+02 0.012 26.6 11.2 123 76-198 36-173 (269)
89 TIGR00210 gltS sodium--glutama 32.5 81 0.0018 34.5 5.6 40 172-211 8-51 (398)
90 PF03594 BenE: Benzoate membra 32.0 6.9E+02 0.015 27.1 15.1 82 114-208 242-325 (378)
91 TIGR01686 FkbH FkbH-like domai 30.4 91 0.002 32.9 5.6 59 563-621 2-78 (320)
92 PF00308 Bac_DnaA: Bacterial d 29.9 1.9E+02 0.004 28.7 7.4 69 533-603 67-137 (219)
93 TIGR02717 AcCoA-syn-alpha acet 29.8 3.4E+02 0.0073 30.2 10.2 94 529-641 343-444 (447)
94 cd07021 Clp_protease_NfeD_like 29.7 99 0.0021 29.7 5.2 47 524-581 1-47 (178)
95 PF03818 MadM: Malonate/sodium 29.6 1.7E+02 0.0036 22.7 5.2 17 279-295 41-57 (60)
96 COG0053 MMT1 Predicted Co/Zn/C 29.2 6E+02 0.013 26.6 11.4 28 525-552 249-276 (304)
97 PRK09757 PTS system N-acetylga 28.4 3.5E+02 0.0075 27.9 9.1 28 183-210 163-190 (267)
98 PF00072 Response_reg: Respons 28.3 2.8E+02 0.0061 23.1 7.5 54 563-621 43-98 (112)
99 TIGR01113 mtrE N5-methyltetrah 28.2 5.2E+02 0.011 26.2 9.7 89 107-211 51-143 (283)
100 PRK10692 hypothetical protein; 27.9 1.4E+02 0.003 24.9 4.8 45 81-127 6-58 (92)
101 cd02072 Glm_B12_BD B12 binding 27.8 1.3E+02 0.0028 27.2 5.2 61 575-638 57-127 (128)
102 cd03412 CbiK_N Anaerobic cobal 27.7 2.3E+02 0.0049 25.4 6.9 54 578-639 12-67 (127)
103 PF10337 DUF2422: Protein of u 27.5 7E+02 0.015 27.7 12.3 79 402-488 135-213 (459)
104 TIGR01662 HAD-SF-IIIA HAD-supe 27.5 1.1E+02 0.0023 27.2 4.8 77 565-641 1-98 (132)
105 COG2450 Uncharacterized conser 27.2 2.1E+02 0.0045 25.7 6.1 37 565-601 65-101 (124)
106 TIGR01672 AphA HAD superfamily 27.1 1.9E+02 0.0042 29.1 6.9 77 529-620 42-160 (237)
107 TIGR01460 HAD-SF-IIA Haloacid 26.6 1.2E+02 0.0025 30.5 5.3 72 567-640 1-78 (236)
108 TIGR02663 nifX nitrogen fixati 26.3 1.9E+02 0.0041 25.6 6.0 50 595-646 62-112 (119)
109 TIGR00955 3a01204 The Eye Pigm 26.2 2.2E+02 0.0047 33.1 8.2 76 563-640 184-261 (617)
110 PF13401 AAA_22: AAA domain; P 26.2 59 0.0013 28.6 2.8 40 565-610 89-129 (131)
111 PRK00972 tetrahydromethanopter 26.1 6E+02 0.013 25.8 9.8 88 107-211 58-149 (292)
112 KOG1288 Amino acid transporter 25.7 4.6E+02 0.01 30.8 10.0 18 423-440 369-386 (945)
113 cd02067 B12-binding B12 bindin 25.5 4.5E+02 0.0097 22.8 8.6 65 563-638 50-118 (119)
114 PF01566 Nramp: Natural resist 25.1 8.5E+02 0.018 25.9 15.6 52 170-221 21-79 (358)
115 PRK03562 glutathione-regulated 25.1 8.9E+02 0.019 28.2 12.9 42 563-619 423-464 (621)
116 TIGR02230 ATPase_gene1 F0F1-AT 25.0 1.2E+02 0.0027 26.1 4.3 42 251-292 52-93 (100)
117 PF00466 Ribosomal_L10: Riboso 24.9 1.3E+02 0.0029 25.4 4.7 48 564-618 21-68 (100)
118 COG2179 Predicted hydrolase of 24.4 1.8E+02 0.004 27.6 5.6 58 563-620 27-88 (175)
119 PF10762 DUF2583: Protein of u 23.8 1.7E+02 0.0038 24.2 4.6 44 82-127 7-58 (89)
120 cd03238 ABC_UvrA The excision 23.7 2.6E+02 0.0056 26.7 6.8 45 563-608 107-151 (176)
121 TIGR01016 sucCoAbeta succinyl- 23.2 5.5E+02 0.012 27.8 10.2 71 562-639 309-383 (386)
122 PF03616 Glt_symporter: Sodium 23.1 1.2E+02 0.0026 32.8 4.9 40 172-211 8-51 (368)
123 COG4129 Predicted membrane pro 22.2 1.5E+02 0.0033 31.5 5.3 51 395-451 8-58 (332)
124 TIGR01664 DNA-3'-Pase DNA 3'-p 22.1 1.2E+02 0.0026 28.6 4.2 56 563-618 12-94 (166)
125 PLN03211 ABC transporter G-25; 22.0 4.2E+02 0.0092 31.1 9.5 76 563-640 224-301 (659)
126 COG1030 NfeD Membrane-bound se 21.7 1.7E+02 0.0036 32.2 5.5 64 522-600 26-89 (436)
127 PLN00124 succinyl-CoA ligase [ 21.6 2.7E+02 0.0059 30.7 7.3 72 562-639 344-418 (422)
128 COG0565 LasT rRNA methylase [T 21.4 1.8E+02 0.0039 29.4 5.3 73 564-644 5-80 (242)
129 KOG1292 Xanthine/uracil transp 21.3 3E+02 0.0064 30.8 7.3 75 114-204 309-384 (510)
130 TIGR02324 CP_lyasePhnL phospho 21.2 4E+02 0.0086 26.0 8.0 46 563-609 167-212 (224)
131 PF14188 DUF4311: Domain of un 21.2 1.2E+02 0.0025 28.7 3.6 22 83-104 88-114 (213)
132 cd03246 ABCC_Protease_Secretio 21.0 4.5E+02 0.0097 24.6 8.0 45 563-608 114-158 (173)
133 cd00379 Ribosomal_L10_P0 Ribos 21.0 4E+02 0.0088 24.4 7.5 63 539-619 4-66 (155)
134 PF03956 DUF340: Membrane prot 20.9 99 0.0021 30.1 3.3 55 423-477 23-78 (191)
135 cd05797 Ribosomal_L10 Ribosoma 20.8 3.3E+02 0.0071 25.3 6.8 49 564-619 20-68 (157)
136 COG3715 ManY Phosphotransferas 20.7 2.6E+02 0.0056 28.6 6.3 64 359-423 51-114 (265)
137 PF07894 DUF1669: Protein of u 20.6 2E+02 0.0043 29.8 5.6 71 529-617 125-198 (284)
138 PF11340 DUF3142: Protein of u 20.5 7E+02 0.015 24.0 8.8 78 521-604 4-82 (181)
139 cd00851 MTH1175 This uncharact 20.5 2.2E+02 0.0047 23.9 5.1 47 588-637 55-102 (103)
140 PF02579 Nitro_FeMo-Co: Dinitr 20.3 2E+02 0.0043 23.7 4.8 48 588-638 45-93 (94)
141 PRK13499 rhamnose-proton sympo 20.2 7.5E+02 0.016 26.5 10.0 78 77-154 67-153 (345)
142 PTZ00445 p36-lilke protein; Pr 20.1 2.3E+02 0.0049 28.2 5.6 48 562-609 41-104 (219)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-107 Score=923.71 Aligned_cols=622 Identities=38% Similarity=0.652 Sum_probs=558.3
Q ss_pred cccccCCCCCChhhHHHhhccccccCCCccccccCCC--chhHHHHhhhcccccccccCCCCh-hhhHhhHHHHHHHHHH
Q 006138 20 AHRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKP--ASKKFILGLQYVFPIFEWAPRYSF-QFLKADLIAGITIASL 96 (659)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~wl~~Y~~-~~l~~Di~aGltv~~~ 96 (659)
.+.++.|++++..+..++..+++.+.+++.++++++. ++.++.+.+++++|+++|+|+|++ +++.+|++||+|+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l 93 (665)
T KOG0236|consen 14 RASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSL 93 (665)
T ss_pred cccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeee
Confidence 4556688888888888888888877777777777654 466789999999999999999999 7899999999999999
Q ss_pred HhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCC---ChhhHHHHHHHHHH
Q 006138 97 AIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNE---NPKLYLHLAFTATF 173 (659)
Q Consensus 97 ~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~~~~~~~ 173 (659)
++||+||||.+||+||+|||||+|+|+++|++||||||+++||+|++|+|+++++++..++.. ++..+++++.++||
T Consensus 94 ~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~ 173 (665)
T KOG0236|consen 94 SVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTF 173 (665)
T ss_pred ecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988876654333 45677899999999
Q ss_pred HHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHH---HHHHhhcCcCchhhHH
Q 006138 174 FAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVM---HSIFSQTQRWRWESGV 250 (659)
Q Consensus 174 l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 250 (659)
++|++|++||++|+|++++|+|+|++.||++|+|++++.+|+|.++|+++.+++.+....+ ...+.+.++. +.+++
T Consensus 174 l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 252 (665)
T KOG0236|consen 174 LTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLV 252 (665)
T ss_pred HHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhh
Confidence 9999999999999999999999999999999999999999999999999665555543333 3334444443 78999
Q ss_pred HHHHHHHHHHHHHH-hhhcCCccchhccchhHHHHHHHHHHHHHhcccCC-CeEEeecCCCCCCCCCCCccccchhHHHH
Q 006138 251 LGCGFLFFLLITRY-FSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERH-GVQVIGYLKKGLNPPSFSDLVFVSPYLTT 328 (659)
Q Consensus 251 ig~~~l~~l~~~~~-~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~-~v~~vg~ip~g~p~~~~p~~~~~~~~~~~ 328 (659)
++++++++++..|. ..++.++++|+|.+.+++++|++|+++|.++.++. ....++++|.|+|+|++|.+++.. .
T Consensus 253 ~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~ 328 (665)
T KOG0236|consen 253 LSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----Q 328 (665)
T ss_pred hHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----H
Confidence 99999999999994 44555666679999999999999999999998764 556667999999999999887644 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHH
Q 006138 329 AIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMS 408 (659)
Q Consensus 329 ~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a 408 (659)
.++.++.+++++++|+++++|.++++++|++|.||||+|+|++|++||||+|+|++++++||++|.++|+|||+++++++
T Consensus 329 ~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~ 408 (665)
T KOG0236|consen 329 VIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSA 408 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHH
Confidence 66677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhchHHHHHHHHHHHHhh-ccChHHHHHHhccCccceehhhhhhhhhhhhchhhhHHHHHHHHHHH
Q 006138 409 MAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLG-LIDYEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGLVIAISISVLR 487 (659)
Q Consensus 409 ~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl~~Gv~~sl~~ 487 (659)
+++++++++++|+++|+|+|+||++++.++.+ +++.++++++||.+|.|+++|++|++.+++.+++.|+++||++|++.
T Consensus 409 ~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ 488 (665)
T KOG0236|consen 409 ALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFF 488 (665)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceeeeccccCCccccccccCCCCCCCCcEEEEEEcCceeEechHHHHHHHH--HHHHHHhhh---hhhccCC
Q 006138 488 VLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIA--RWVEEEEDK---LKASEES 562 (659)
Q Consensus 488 ~l~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~--~~i~~~~~~---~~~~~~~ 562 (659)
+++|.+||+...+|++++++.|++.++|++.++.++++|+|+++|++|.|.+.+++++. +++++.+.. .++...+
T Consensus 489 ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (665)
T KOG0236|consen 489 IILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHEN 568 (665)
T ss_pred HHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999998873 444442111 1111222
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhcc
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 642 (659)
+.+++|+||+++++||++|+.+|+++.+++++++++++++|+++++++.|+++++.+.++++++|+|++||++.++.+++
T Consensus 569 ~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~ 648 (665)
T KOG0236|consen 569 SIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELS 648 (665)
T ss_pred cceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999999999998899999999999999999999888
Q ss_pred cCCC
Q 006138 643 TCEP 646 (659)
Q Consensus 643 ~~~~ 646 (659)
..+.
T Consensus 649 ~~~~ 652 (665)
T KOG0236|consen 649 RGTD 652 (665)
T ss_pred cccc
Confidence 5554
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=2.9e-100 Score=861.62 Aligned_cols=560 Identities=44% Similarity=0.767 Sum_probs=521.9
Q ss_pred ccccccCCCChhhhHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHH
Q 006138 70 PIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIAS 149 (659)
Q Consensus 70 P~~~wl~~Y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~ 149 (659)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCcc
Q 006138 150 FLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATD 229 (659)
Q Consensus 150 ~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~ 229 (659)
++.+.+.+......+.+++.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99988644333346788899999999999999999999999999999999999999999999999999999986433456
Q ss_pred HHHHHHHHHhhcCcC---chhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeec
Q 006138 230 VMSVMHSIFSQTQRW---RWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGY 306 (659)
Q Consensus 230 ~~~~~~~~~~~~~~~---~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ 306 (659)
+++.+.+.+.++++. ||++++++++++++++..+++.+|+++..+.+.|.+|++++++++++++++.+++++..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 777777788777666 99999999999999999998888888777777789999999999999999888899999999
Q ss_pred CCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccc
Q 006138 307 LKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGP 386 (659)
Q Consensus 307 ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s 386 (659)
+|.|+|.+.+|.++| ..+...++.++.+++++++|+++++|+++++++|++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~~--~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLDW--ELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 999998887776554 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccceehhhhhhh
Q 006138 387 FSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDFIVCIGAYV 466 (659)
Q Consensus 387 ~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~ 466 (659)
++||++|.++|+|||++++++++++++++++++|+++++|+++||+++++++++|+++++++++||.++.|+.+|++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhchhhhHHHHHHHHHHHHHHHHhccceeeeccccCCccccccccCCCCCCCCcEEEEEEcCceeEechHHHHHHHH
Q 006138 467 GVVFGSIQIGLVIAISISVLRVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIA 546 (659)
Q Consensus 467 ~~~~~~~~~Gl~~Gv~~sl~~~l~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~ 546 (659)
+|+++|++.|+++|+++|++.+++|.+||+..+++++++++.|||.+++++.++.++++++|++|+|+|+|+++|++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999998
Q ss_pred HHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcce
Q 006138 547 RWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWI 626 (659)
Q Consensus 547 ~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~i 626 (659)
+.++++.+ .+++.++.+++|+||++|+++|+||+++|.++.++++++|+++.+++.++++++.|+++|+.+.++++++
T Consensus 479 ~~~~~~~~--~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~ 556 (563)
T TIGR00815 479 KRIEDETR--RELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEHF 556 (563)
T ss_pred HHHhhhcc--ccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCcce
Confidence 87664211 1122335799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHH
Q 006138 627 YLTVGEA 633 (659)
Q Consensus 627 f~s~~~A 633 (659)
|+|.+||
T Consensus 557 f~s~~~A 563 (563)
T TIGR00815 557 FPSVSDA 563 (563)
T ss_pred eCChhhC
Confidence 9999986
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-92 Score=782.03 Aligned_cols=547 Identities=31% Similarity=0.528 Sum_probs=513.0
Q ss_pred hhcccccccccCCCChhhhHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHH
Q 006138 65 LQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVAS 144 (659)
Q Consensus 65 ~~~~~P~~~wl~~Y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~s 144 (659)
+.+++|..+|.++|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCcccc
Q 006138 145 LLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHF 224 (659)
Q Consensus 145 l~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~ 224 (659)
++++.++.++. +.+++.++++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998553 345889999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCccHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccC--CCeE
Q 006138 225 THATDVMSVMHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAER--HGVQ 302 (659)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~--~~v~ 302 (659)
.+ .++..+..++++..++||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+. +| +
T Consensus 157 ~~--~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 VS--GFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred cc--chHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 43 378888889999999999999999999999999988776666 78999999999999998763 66 7
Q ss_pred EeecCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcc
Q 006138 303 VIGYLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYL 382 (659)
Q Consensus 303 ~vg~ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p 382 (659)
+.|++|.++|.+.+|++++ +.+.+.++.++.+++++++|++.+++++++++|+++|.||||+|+|++|++++||||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~~--~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVSL--SLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 8899999999999998874 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHHh-ccCccceehh
Q 006138 383 TTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLF-KVDKFDFIVC 461 (659)
Q Consensus 383 ~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~-~~~~~d~~v~ 461 (659)
+||+++||++|.++|+|||+|++++|+++++++++++|++++||+|+|++++++++++|++|+.++.++ |.+|.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999854 4889999999
Q ss_pred hhhhhhhhhhchhhhHHHHHHHHHHHHHHHHhccceeeeccccCCccccccccCCCCCCCCcEEEEEEcCceeEechHHH
Q 006138 462 IGAYVGVVFGSIQIGLVIAISISVLRVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYL 541 (659)
Q Consensus 462 ~~t~~~~~~~~~~~Gl~~Gv~~sl~~~l~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~ 541 (659)
++|++++++.+++.|+.+|+++|++.+++|.+||+...+++.++.+. ++.++++..+..|++.++|++||++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999988888877665 67778888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcccc
Q 006138 542 RERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 542 ~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~ 621 (659)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+..+..
T Consensus 463 ~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~~i 531 (554)
T COG0659 463 ERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLYLV 531 (554)
T ss_pred HHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccccc
Confidence 9999886543 37899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCHHHHHHHHHhhcc
Q 006138 622 GQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 622 ~~~~if~s~~~Av~~~~~~l~ 642 (659)
+++++|+++++|++.++....
T Consensus 532 ~~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 532 GAEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred ccccccchhHHHHHHHHHHhc
Confidence 988999999999998886544
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=4.8e-91 Score=786.64 Aligned_cols=523 Identities=22% Similarity=0.358 Sum_probs=472.8
Q ss_pred ccCCCChhhhHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhh
Q 006138 74 WAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQ 153 (659)
Q Consensus 74 wl~~Y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~ 153 (659)
|+|+|+++++++|++||+|++++.+||+||||.+||+||++||||+++|+++|++||+||++++||++.++++++..+.+
T Consensus 20 wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~ 99 (568)
T PRK11660 20 WKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQ 99 (568)
T ss_pred HHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877665
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHH
Q 006138 154 EVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSV 233 (659)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~ 233 (659)
.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++++.+|++.++|++..+...++++.
T Consensus 100 ~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~~ 170 (568)
T PRK11660 100 FG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEK 170 (568)
T ss_pred hh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 42 345667899999999999999999999999999999999999999999999999999864444678889
Q ss_pred HHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeec-------
Q 006138 234 MHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGY------- 306 (659)
Q Consensus 234 ~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~------- 306 (659)
+.+++++++++||+++++|++++++++.++++.+|.| .++++++++|++++.++....+++.+|+
T Consensus 171 l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~~ 242 (568)
T PRK11660 171 VGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVLA 242 (568)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeeccccccccc
Confidence 9999999999999999999999999988876655544 6799999999999999876667777665
Q ss_pred -------CCCCCCCCCCCc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhh
Q 006138 307 -------LKKGLNPPSFSD---------LVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGM 370 (659)
Q Consensus 307 -------ip~g~p~~~~p~---------~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi 370 (659)
+|.++|.+.+|. .+++++.+.+.++.++.+++++++|++.+++.++++++++.|.||||+|+|+
T Consensus 243 ~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~ 322 (568)
T PRK11660 243 DGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGL 322 (568)
T ss_pred ccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhH
Confidence 677777666552 1235567888899999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHH
Q 006138 371 MNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHL 450 (659)
Q Consensus 371 ~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l 450 (659)
+|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|++++||+++||+++++++++|++++.++++
T Consensus 323 aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~~ 402 (568)
T PRK11660 323 GNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVDL 402 (568)
T ss_pred HHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hc-cCccceehhhhhhhhhhhhchhhhHHHHHHHHHHHHHHHHhccceeeeccccCCccccccccCCCCCCCCcEEEEEE
Q 006138 451 FK-VDKFDFIVCIGAYVGVVFGSIQIGLVIAISISVLRVLLFVARPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKI 529 (659)
Q Consensus 451 ~~-~~~~d~~v~~~t~~~~~~~~~~~Gl~~Gv~~sl~~~l~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Iirl 529 (659)
|| .++.|+.+|+.+++.+++++++.|+++|+++|++.+++|.+++. +.+ +.++ .++.+++.++|+
T Consensus 403 ~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~------~~~~---~~~~~~i~iv~~ 468 (568)
T PRK11660 403 LRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLA------PISV---QDVPDDVLVLRI 468 (568)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----ccc------cccc---ccCCCcEEEEEe
Confidence 77 57889999999999999999999999999999999999998864 111 1111 344578999999
Q ss_pred cCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Q 006138 530 DAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVT 609 (659)
Q Consensus 530 ~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 609 (659)
+|+|||+|++++++++++.. ++.+++|+||+++++||+||+++|.++.+++++ |+++.+++++++++
T Consensus 469 ~g~L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v~ 535 (568)
T PRK11660 469 NGPLFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQPL 535 (568)
T ss_pred CCeeeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHHH
Confidence 99999999999999887632 247899999999999999999999999999999 99999999999999
Q ss_pred HHHHhCCCccccCCcceecCHHHHHHHHHhh
Q 006138 610 KKLDKSKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 610 ~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
+.|+++|+.+..+.+++|+|.|||++++++.
T Consensus 536 ~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 536 RTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 9999999999888889999999999999763
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.7e-47 Score=397.51 Aligned_cols=279 Identities=35% Similarity=0.653 Sum_probs=255.2
Q ss_pred HHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCc-CchhhHHHHHHHHHHHH
Q 006138 182 LGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQR-WRWESGVLGCGFLFFLL 260 (659)
Q Consensus 182 lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~l~~l~ 260 (659)
||++|+|++++|+|+||+.||++|+|++++.+|++.++|++..+...+..+.+.+++...++ +||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999998533334555556666666666 59999999999999999
Q ss_pred HHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 006138 261 ITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGLNPPSFSDLVFVSPYLTTAIKTGIITGVIA 340 (659)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~ 340 (659)
..+++.+++++.++.+.|.+++++++++++++.++.+.++++.+|++|.++|+|.+|+.+++++.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 98888877777777778899999999999999998888889999999999999999944444567888899999999999
Q ss_pred HHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhh
Q 006138 341 MAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTP 420 (659)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~ 420 (659)
++|++.+++++++++++++|.|||++++|++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccceeh
Q 006138 421 LFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDFIV 460 (659)
Q Consensus 421 l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v 460 (659)
+++|+|+++||+++++++++++++++++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999975
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=1.2e-26 Score=252.85 Aligned_cols=323 Identities=16% Similarity=0.095 Sum_probs=240.6
Q ss_pred HHHHHhhhHHHHHHHhCCCc-------cchhhhhhhhhhhhh----hhcCCCccccchhHHHHHHHHHHHhhhccCCCCh
Q 006138 93 IASLAIPQGISYAKLANLPP-------ILGLYSSFVPPLVYA----IMGSSKDLAVGTVAVASLLIASFLGQEVNYNENP 161 (659)
Q Consensus 93 v~~~~iPq~~aya~laglpp-------~~GL~s~~i~~liy~----~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 161 (659)
.+.+.+|.-++- ..|+|+ +..++++.++++++. .+|++.++..||.......+.....+
T Consensus 10 ~~~i~~p~i~~~--a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~-------- 79 (406)
T TIGR03173 10 AGAVAVPLIVGG--ALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG-------- 79 (406)
T ss_pred HHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh--------
Confidence 345666766554 258888 578999999999997 67999999999976443322222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhc
Q 006138 162 KLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQT 241 (659)
Q Consensus 162 ~~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~ 241 (659)
..++.+.++.+++|++++++|. +++++.+++|+.+++.+++.+|+.+...+++...|.... .
T Consensus 80 -~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~----------------~ 141 (406)
T TIGR03173 80 -GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGA----------------P 141 (406)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCc----------------c
Confidence 2378889999999999999994 689999999998888899999999999998877654310 0
Q ss_pred CcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCC-CCCC---CCCC
Q 006138 242 QRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKK-GLNP---PSFS 317 (659)
Q Consensus 242 ~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~-g~p~---~~~p 317 (659)
+..++.++.+++.+++++++.+++.|+..| .++.++++++++++++.++..+ .+.+++.|. .+|. +.+|
T Consensus 142 ~~~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~P 214 (406)
T TIGR03173 142 DFGSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGAP 214 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCCC
Confidence 113455677888888777776654444322 2378999999999999987522 222332221 2332 3344
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccC---CchHHHHHhhhhhhhhccCCcccccccchhhHhh
Q 006138 318 DLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHID---GNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNF 394 (659)
Q Consensus 318 ~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d---~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~ 394 (659)
++++ ..+ ...+.++++++.|+++..++.++..+++.| .|||+.++|++|+++|+||++|+++...+++++.
T Consensus 215 ~f~~--~~~----~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~ 288 (406)
T TIGR03173 215 TFDL--VAI----LTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQ 288 (406)
T ss_pred eeCH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHH
Confidence 4433 333 334467788999999888888887776654 5799999999999999999999887544467888
Q ss_pred hcCCCchhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccc
Q 006138 395 NAGCKTAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFD 457 (659)
Q Consensus 395 ~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d 457 (659)
.+|++||++++++|++++++.++ +++++.++|.++++++++. .++++....++.++|.+..|
T Consensus 289 ~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~-~~~~i~~~g~~~l~~~~~~~ 352 (406)
T TIGR03173 289 LTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV-MFGMVAASGIRILSKVDFDR 352 (406)
T ss_pred HhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCcccC
Confidence 89999999999999998888776 8999999999999998775 89999888888887765443
No 7
>PRK10720 uracil transporter; Provisional
Probab=99.95 E-value=1.6e-25 Score=243.99 Aligned_cols=359 Identities=13% Similarity=0.082 Sum_probs=255.8
Q ss_pred HHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcC-CCccccchhHHH-HHHHHHHHhhhccCCCChhhHHHHHHHH
Q 006138 94 ASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGS-SKDLAVGTVAVA-SLLIASFLGQEVNYNENPKLYLHLAFTA 171 (659)
Q Consensus 94 ~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGs-s~~~~~Gp~a~~-sl~~~~~v~~~~~~~~~~~~~~~~~~~~ 171 (659)
+.+.+|.-+ |+++...+..+.++++++.++++ ..+...||+... +.+... ... -++.+.++
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~--~~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLL--LPL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHH--HHc---------cHHHHHHH
Confidence 556666633 88999999999999999998774 678888885433 222221 111 16788999
Q ss_pred HHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCcCchh
Q 006138 172 TFFAGVFQASLGLL--RL--GFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQRWRWE 247 (659)
Q Consensus 172 ~~l~Gi~~l~lg~~--rl--g~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (659)
.+++|+++++++++ |+ +++.+++|+.+++.+++.+|+.+....++. .|.... .. +..+++
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~~--~~-------------~~~~~~ 156 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLPA--EG-------------QTPDSK 156 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccCC--CC-------------cccchH
Confidence 99999999999997 33 478999999999999999999999777653 332110 00 124566
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecC-CCCCCCCCCCccccchhHH
Q 006138 248 SGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYL-KKGLNPPSFSDLVFVSPYL 326 (659)
Q Consensus 248 ~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~i-p~g~p~~~~p~~~~~~~~~ 326 (659)
++.+++++++++++..+..|++.|. ++.++++++++++++.++.. +++.+++. +.++|.+..|+++ ...+
T Consensus 157 ~~~lalv~l~iil~~~~~~kg~~~~-----~~iLigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P~fd--~~~i 227 (428)
T PRK10720 157 TIIISMVTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTPRFE--WFAI 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCCcCc--HHHH
Confidence 7888988888877655444554332 25699999999999998753 23333322 3456666666544 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHH
Q 006138 327 TTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIV 406 (659)
Q Consensus 327 ~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv 406 (659)
...++.+++..+.++.+..++++..+++...+.|.|||+.++|++|+++|+||++|++++..+..+-..+|..+|....+
T Consensus 228 l~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~ 307 (428)
T PRK10720 228 LTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGG 307 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHH
Confidence 56665555554444444444444333222235688999999999999999999999999888888888899999999988
Q ss_pred HHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccce------ehhh-----------hhhhh
Q 006138 407 MSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDF------IVCI-----------GAYVG 467 (659)
Q Consensus 407 ~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~------~v~~-----------~t~~~ 467 (659)
+++++++..++ +++++..||.+|++|+.+ ++++++....++.+|+ ++.|+ .+.. .++..
T Consensus 308 a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~-~~~~~~~~~n~~i~~~~l~~g~~~~~~~~~~ 385 (428)
T PRK10720 308 AAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIE-SKVDYNKAQNLILTSVILIIGVSGAKVNIGA 385 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHH-ccCCCCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 88887777765 999999999999999999 6999999999999965 33332 2211 12223
Q ss_pred hhhhchhhhHHHHHHHHHHHHHHHHhccc
Q 006138 468 VVFGSIQIGLVIAISISVLRVLLFVARPR 496 (659)
Q Consensus 468 ~~~~~~~~Gl~~Gv~~sl~~~l~~~~~~~ 496 (659)
.+..|+..|.++|++++++...+|.-|+.
T Consensus 386 ~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 386 AELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 34457888999999999887765555443
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.95 E-value=3.2e-25 Score=241.55 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=252.5
Q ss_pred HHHHHHhhhHHHHHHHhCCCcc-------chhhhhhhhhhhhhhhcCCC---ccccchh-HHHHHHHHHHHhhhccCCCC
Q 006138 92 TIASLAIPQGISYAKLANLPPI-------LGLYSSFVPPLVYAIMGSSK---DLAVGTV-AVASLLIASFLGQEVNYNEN 160 (659)
Q Consensus 92 tv~~~~iPq~~aya~laglpp~-------~GL~s~~i~~liy~~fGss~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~~ 160 (659)
..+.+.+|.-++-+. +++. ..+..+.++++++++.+..+ ....|+. +.++...... .+.
T Consensus 19 ~~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~------ 88 (415)
T TIGR00801 19 FGGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGL------ 88 (415)
T ss_pred HHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hcc------
Confidence 445677777776554 4443 67899999999999887766 7777776 5544332211 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHH
Q 006138 161 PKLYLHLAFTATFFAGVFQASLGLL--RL--GFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHS 236 (659)
Q Consensus 161 ~~~~~~~~~~~~~l~Gi~~l~lg~~--rl--g~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~ 236 (659)
.++.+....+++|+++++++++ |+ +++.+++|+.|..+++.++|+.++..+++++.|....+...+
T Consensus 89 ---~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~~------- 158 (415)
T TIGR00801 89 ---GIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSAT------- 158 (415)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCcccccc-------
Confidence 1577889999999999999985 44 577999999999999999999999999999877643211111
Q ss_pred HHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCC-CCCCCC
Q 006138 237 IFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKK-GLNPPS 315 (659)
Q Consensus 237 ~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~-g~p~~~ 315 (659)
..++.++.+++.+++++++++++.|++-| .++.++++++++++++.++..+. ..+.+.|. ++|.+.
T Consensus 159 ------~~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~ 225 (415)
T TIGR00801 159 ------YGSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTPF 225 (415)
T ss_pred ------cCchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCcc
Confidence 12456688899888888777655444322 23789999999999999875222 11233332 455554
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccC----CchHHHHHhhhhhhhhccCCcccccccchhh
Q 006138 316 FSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHID----GNKEMIAFGMMNIAGSCTSCYLTTGPFSRSA 391 (659)
Q Consensus 316 ~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d----~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~ 391 (659)
.|..+|+.. .+...+.++++++.|+++..++++++.|++.| .|||+.++|++|+++|+||++|++++..+++
T Consensus 226 ~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g 301 (415)
T TIGR00801 226 TFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG 301 (415)
T ss_pred CCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe
Confidence 443344443 33344567889999999999998888887653 5799999999999999999999999999999
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCcc---ceehhhhh
Q 006138 392 VNFNAGCKTAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKF---DFIVCIGA 464 (659)
Q Consensus 392 v~~~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~---d~~v~~~t 464 (659)
++..+|++||.+.+++|++++++.++ +++++.++|.++++++++ +.++++....++.+++.+.. +..+..++
T Consensus 302 ~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s 378 (415)
T TIGR00801 302 VIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAAS 378 (415)
T ss_pred eeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHH
Confidence 99999999999999999999999999 999999999999999999 58999988888888875543 34444443
No 9
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.94 E-value=4.9e-24 Score=225.16 Aligned_cols=372 Identities=14% Similarity=0.180 Sum_probs=281.0
Q ss_pred ChhhhHhhHHHHHHHHHHHhhhHHHHHH--------HhCCCcc----chhhhhhhhhhhhhhhcCCCccccchhHHHHHH
Q 006138 79 SFQFLKADLIAGITIASLAIPQGISYAK--------LANLPPI----LGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLL 146 (659)
Q Consensus 79 ~~~~l~~Di~aGltv~~~~iPq~~aya~--------laglpp~----~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~ 146 (659)
+-.+++.|++||+|+++ +|+|-. -+|+|.. ....+++++++..+++...|....-..+..+..
T Consensus 15 ~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~An~P~alapgmglnAfF 89 (436)
T COG2252 15 HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGLNAFF 89 (436)
T ss_pred cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhHHHHH
Confidence 34569999999999998 566632 2677744 346677889999999976544444347777777
Q ss_pred HHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhh-hHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccC
Q 006138 147 IASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLG-FIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFT 225 (659)
Q Consensus 147 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rlg-~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~ 225 (659)
...++...+ ..||.+.+++|++|++++++++++++ |+++.+|+++..|..+|+|++|..-.++ -.|+-..
T Consensus 90 aftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~-~~Givv~- 160 (436)
T COG2252 90 AFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLK-NAGIVVA- 160 (436)
T ss_pred HHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-hCCeEEe-
Confidence 777777664 22899999999999999999999984 7799999999999999999999988888 4455211
Q ss_pred CCccHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEee
Q 006138 226 HATDVMSVMHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIG 305 (659)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg 305 (659)
+.. ..-.+.+.+.+.+++++..+++...... +|.+. +.+++++..+++++..+.....-...+
T Consensus 161 ~~~--------tlv~LG~~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~t~~g~~~g~~~~~~~~~~ 223 (436)
T COG2252 161 NPA--------TLVALGDFTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVTTILGIILGIDVHFGGLVG 223 (436)
T ss_pred cCc--------ceEEeecCCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHHHHHHHHhccccccccccc
Confidence 111 1223334444667777777666655543 45554 568889999999999875322211233
Q ss_pred cCCCCCCCCCCCccccch-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC------cccCCchHHHHHhhhhhhhhcc
Q 006138 306 YLKKGLNPPSFSDLVFVS-PYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKN------YHIDGNKEMIAFGMMNIAGSCT 378 (659)
Q Consensus 306 ~ip~g~p~~~~p~~~~~~-~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~------~~~d~nqEl~a~Gi~Ni~~s~f 378 (659)
..|.-.| .+.+.|+.. ......++..+....+.++|++.+-...+++.| ...|.+|-+.+++++.++|+++
T Consensus 224 ~~p~~~~--~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~ 301 (436)
T COG2252 224 APPSLSP--IFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALF 301 (436)
T ss_pred CCCCccc--hhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhc
Confidence 3333222 222444443 334556667778888999999887777666433 2357899999999999999999
Q ss_pred CCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccce
Q 006138 379 SCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDF 458 (659)
Q Consensus 379 g~~p~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~ 458 (659)
|..|++. +-.|+.....|+||.++.++.|++.++. +|++|+...+|..+.++.+++++..|. ..+.++|+.|+
T Consensus 302 GtS~~t~-yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~-----~~v~~id~~d~ 374 (436)
T COG2252 302 GTSTVTA-YIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALML-----SSVKQIDWSDF 374 (436)
T ss_pred CCcchhh-hhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHH-----hhhccCCchhh
Confidence 9999665 9999999999999999999999999999 699999999999999999999998887 46677899999
Q ss_pred ehhhhhhhhhhhhchhhhHHHHHHHHHHHHHH
Q 006138 459 IVCIGAYVGVVFGSIQIGLVIAISISVLRVLL 490 (659)
Q Consensus 459 ~v~~~t~~~~~~~~~~~Gl~~Gv~~sl~~~l~ 490 (659)
...+.+|+..++..+.+.+.-|+.++++.+..
T Consensus 375 ~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 375 TEAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 98999999999888888888888888866543
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=1.3e-25 Score=186.03 Aligned_cols=83 Identities=57% Similarity=1.082 Sum_probs=80.2
Q ss_pred cccccccCCCCh-hhhHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHH
Q 006138 69 FPIFEWAPRYSF-QFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLI 147 (659)
Q Consensus 69 ~P~~~wl~~Y~~-~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~ 147 (659)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+++++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999997 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 006138 148 ASFL 151 (659)
Q Consensus 148 ~~~v 151 (659)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.91 E-value=5.7e-22 Score=216.03 Aligned_cols=329 Identities=13% Similarity=0.129 Sum_probs=226.7
Q ss_pred hHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhh-hhcCCCccccchhHHHHHHHHHHHhhhccCCCCh
Q 006138 83 LKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYA-IMGSSKDLAVGTVAVASLLIASFLGQEVNYNENP 161 (659)
Q Consensus 83 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~-~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 161 (659)
+...++.|+.-.+.+.--.++...+-|+++...+.++.++++++. .+|+..+...|+........-.... .. ..++
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~-~~--~~~~ 105 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATG-YN--GQGT 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHh-hc--ccCC
Confidence 567888888777654444444444458999999999999999996 5899999999996665433222211 11 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHH
Q 006138 162 KLYLHLAFTATFFAGVFQASLGLLRL----GFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSI 237 (659)
Q Consensus 162 ~~~~~~~~~~~~l~Gi~~l~lg~~rl----g~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~ 237 (659)
+.+++.+..+++++|++++++|++++ +++.+++|+.|.+-.+..+|+.++...++...|- ++
T Consensus 106 ~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~~------- 171 (429)
T TIGR03616 106 NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------GF------- 171 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------cc-------
Confidence 23567888999999999999999875 6678889988888899999999887766643221 10
Q ss_pred HhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHh----ccc-CCCeEEe-ecCCCCC
Q 006138 238 FSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLS----HAE-RHGVQVI-GYLKKGL 311 (659)
Q Consensus 238 ~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~----~~~-~~~v~~v-g~ip~g~ 311 (659)
-+|. ++++++.+++...+.|+.-|. .+.++++++++++++.+ +.. ..+.+.+ +.-+.++
T Consensus 172 ------~~~~----al~tl~~i~l~~l~~~~~l~~-----~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~l 236 (429)
T TIGR03616 172 ------DSWM----AVLTILCIGAVAVFTRGMLQR-----LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFGL 236 (429)
T ss_pred ------ccHH----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccccC
Confidence 1121 223333333333333433222 27899999999998764 211 1233333 3333356
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCC--chHHHHHhhhhhhhhccCCcccccccch
Q 006138 312 NPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDG--NKEMIAFGMMNIAGSCTSCYLTTGPFSR 389 (659)
Q Consensus 312 p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~--nqEl~a~Gi~Ni~~s~fg~~p~~~s~sr 389 (659)
|++..|.+++ ..+...+ ..+++.+.|+++..++.++..+++.|+ ||++.++|++|+++|+||+.|.+.+..+
T Consensus 237 P~~~~p~f~~--~~il~~~----~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en 310 (429)
T TIGR03616 237 PNFHTPVFNA--NAMLLIA----PVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAEN 310 (429)
T ss_pred CcCCCceEcH--HHHHHHH----HHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeee
Confidence 7666665443 3444333 446667777777777766666555554 8999999999999999999998888777
Q ss_pred hhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHH
Q 006138 390 SAVNFNAGCKTAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHL 450 (659)
Q Consensus 390 S~v~~~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l 450 (659)
..+...+|..+|.....+++++++..++ ++.++..||.+|++|+++ ..++++....++.+
T Consensus 311 ~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 311 IGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7777788888888887777766555544 555999999999999999 59999988888843
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.88 E-value=2.8e-20 Score=201.38 Aligned_cols=339 Identities=15% Similarity=0.113 Sum_probs=237.5
Q ss_pred HHHHHHhhhHHHHHHHhCCCcc-------chhhhhhhhhhhhhhhcCCCccccchhHHHH-HHHHHHHhhhccCCCChhh
Q 006138 92 TIASLAIPQGISYAKLANLPPI-------LGLYSSFVPPLVYAIMGSSKDLAVGTVAVAS-LLIASFLGQEVNYNENPKL 163 (659)
Q Consensus 92 tv~~~~iPq~~aya~laglpp~-------~GL~s~~i~~liy~~fGss~~~~~Gp~a~~s-l~~~~~v~~~~~~~~~~~~ 163 (659)
..+.+.+|.-++= ..|+++. ..+..+.+++++.+.+|++.++..||+...- .+..-..... ..+.....
T Consensus 22 ~~~~i~vPliva~--a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~-~~g~~~~~ 98 (433)
T PRK11412 22 FCNTVVVPPTLLS--AFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEA-SRGTPIND 98 (433)
T ss_pred HHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhccc-ccCccHHH
Confidence 3456667766554 4778875 6789999999999999999999999966542 2222211110 00000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcC
Q 006138 164 YLHLAFTATFFAGVFQASLGLLR-LGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQ 242 (659)
Q Consensus 164 ~~~~~~~~~~l~Gi~~l~lg~~r-lg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~ 242 (659)
..+......+++|++++++|..+ ++++.+++|+.|.+-++.-+|+.++...++++.|.+... ..++ .
T Consensus 99 ~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~-~~~~-----------~ 166 (433)
T PRK11412 99 IATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI-ADPN-----------G 166 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC-cccc-----------c
Confidence 12223346788999999999998 699999999999999999999999999999998862110 0111 1
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHH-HhcccCCCeEEeecCCC-CCCCCCCCccc
Q 006138 243 RWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVY-LSHAERHGVQVIGYLKK-GLNPPSFSDLV 320 (659)
Q Consensus 243 ~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~-~~~~~~~~v~~vg~ip~-g~p~~~~p~~~ 320 (659)
+++...+.+++.++++++....+.|++.|.+ +.|+++++|++++. .++. +...+++.+. .+| +..|. .
T Consensus 167 ~~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G~v~a~~~~g~---d~~~v~~a~w~~~p-fG~P~-~ 236 (433)
T PRK11412 167 KIQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVGWILWAFCFPS---SHSLSGELHWQWFP-LGSGG-A 236 (433)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHhCC---CcchhccCCceeec-CCCCC-c
Confidence 1233456677777777777666555554332 78999999999854 4444 2222333332 233 33443 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCc
Q 006138 321 FVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKT 400 (659)
Q Consensus 321 ~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T 400 (659)
|++..+...+..+++..+....+..++++..+++...+.+.+|.+.++|++|+++|+||++|.+....+..+-..+|+++
T Consensus 237 F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~S 316 (433)
T PRK11412 237 LEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYR 316 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCch
Confidence 44455555555555555555555556666544433325578999999999999999999999999888899999999999
Q ss_pred hhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCcc
Q 006138 401 AVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKF 456 (659)
Q Consensus 401 ~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~ 456 (659)
|....++|+++++..++ ++.++..||.+|++|+.++ .++++-...++.+.|.+..
T Consensus 317 R~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~ 373 (433)
T PRK11412 317 RRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFT 373 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 99999999999988877 8889999999999999888 7888766777776665543
No 13
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.88 E-value=7.7e-21 Score=202.58 Aligned_cols=311 Identities=14% Similarity=0.100 Sum_probs=236.3
Q ss_pred chhhhhhhhhhhhhh----hcCCCccccchhHH-HHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006138 114 LGLYSSFVPPLVYAI----MGSSKDLAVGTVAV-ASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLG 188 (659)
Q Consensus 114 ~GL~s~~i~~liy~~----fGss~~~~~Gp~a~-~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rlg 188 (659)
+.|++|.+++++|.+ +|..-+...|.... ++.+. .+..+.+ .-.+.+....+.+|++.++++.+ +.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i-~~~~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~ 127 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMI-AIGGTTG-------DGIAALLGGIIAAGLVYFLISPI-VK 127 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHH-HHHhccC-------CchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 459999999999997 44455666666433 33332 2222221 11566788899999999999987 44
Q ss_pred -hHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhh
Q 006138 189 -FIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSK 267 (659)
Q Consensus 189 -~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~ 267 (659)
|+.|++|+.|.+-++.-+|+.++...++.+.|........++ .+...+.+++.++++.++..++.|
T Consensus 128 ~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~-------------~~~~~l~la~~tl~~il~~~~f~~ 194 (451)
T COG2233 128 IRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF-------------GSLENLGLALVTLLIILLINRFGK 194 (451)
T ss_pred HHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc-------------CchhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999987632222222 445678889999888877776666
Q ss_pred cCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCC-CCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 006138 268 RKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKK-GLNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIA 346 (659)
Q Consensus 268 ~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~-g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~ 346 (659)
.+-|. .+.|+++++|+++++..+. .+.+.+.+-|. .+|.|..+...|++..+..+++++++..+++..+..+
T Consensus 195 g~~~~-----i~ILiGlv~G~~la~~~G~--vdf~~v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A 267 (451)
T COG2233 195 GFLRR-----IPILIGLVVGYLLALFMGM--VDFSGVAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITA 267 (451)
T ss_pred hHHHH-----HHHHHHHHHHHHHHHHhCC--cCccccccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55432 2679999999999999883 22223444333 4565555544666677777777777777777766777
Q ss_pred HhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhHhhh
Q 006138 347 VGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLF--LTPLFHY 424 (659)
Q Consensus 347 ~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~ 424 (659)
+++...++...+.+.+|.++++|++++++|+||++|.|+...+..+-..+|.+||.....+|+++++..++ ++.+++.
T Consensus 268 ~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~al~~s 347 (451)
T COG2233 268 TGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGALIQS 347 (451)
T ss_pred HHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 77766555555578899999999999999999999999999999999999999999999999998888776 8899999
Q ss_pred chHHHHHHHHHHHHhhccChHHHHHHhccC
Q 006138 425 TPLVVLSAIIMAAMLGLIDYEAVIHLFKVD 454 (659)
Q Consensus 425 iP~~vLa~ili~~~~~li~~~~~~~l~~~~ 454 (659)
||.+|++|+.++ +++++....++.+-|.+
T Consensus 348 IP~pVlGGa~iv-mFG~Ia~sGir~l~~~~ 376 (451)
T COG2233 348 IPSPVLGGAMLV-LFGMIAASGIRILIRNK 376 (451)
T ss_pred CChhhhhHHHHH-HHHHHHHHHHHHHHhcc
Confidence 999999999888 89999877777665543
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.85 E-value=2.2e-19 Score=194.68 Aligned_cols=346 Identities=15% Similarity=0.083 Sum_probs=205.1
Q ss_pred HhhHHHHHHHHHHHhhhHHHHHHH----hCCC------ccchhhhhhhhhhhhhh-hcCCCccccchhHHHHHHHHHHHh
Q 006138 84 KADLIAGITIASLAIPQGISYAKL----ANLP------PILGLYSSFVPPLVYAI-MGSSKDLAVGTVAVASLLIASFLG 152 (659)
Q Consensus 84 ~~Di~aGltv~~~~iPq~~aya~l----aglp------p~~GL~s~~i~~liy~~-fGss~~~~~Gp~a~~sl~~~~~v~ 152 (659)
++++++|++-.+.+.+-.+....+ .|++ ....+..+.++++++++ +|...++..||....-. ....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~-~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF-AFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH-HHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh-hhhccc
Confidence 357888888876544443333332 1221 24678899999999999 99888899998544222 111111
Q ss_pred hhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHH
Q 006138 153 QEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRL-GFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVM 231 (659)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~rl-g~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~ 231 (659)
.. ..+....++.+.+..+++|+++++++++++ +++.+++|+.|..+++.++|+.+....++.+.|.......
T Consensus 80 g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~~~---- 152 (389)
T PF00860_consen 80 GM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNPDG---- 152 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---BTT----
T ss_pred cc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccccc----
Confidence 10 012233478889999999999999999998 5999999999999999999999999999988877532110
Q ss_pred HHHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCC-C
Q 006138 232 SVMHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKK-G 310 (659)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~-g 310 (659)
....++....+++.++++.+....+.+++.+.. +.++++++++++++..+..+..-. +.+-|. +
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~~~~~~~ 217 (389)
T PF00860_consen 153 ---------LLVGDGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VSSAPWFS 217 (389)
T ss_dssp ----------B---HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HHHS-SS-
T ss_pred ---------cccccccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-cccccccc
Confidence 001233445556666666555555444443322 778999999999999873211100 222221 2
Q ss_pred CCC---CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCccccccc
Q 006138 311 LNP---PSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPF 387 (659)
Q Consensus 311 ~p~---~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~ 387 (659)
+|. +.+|. |++..+...+...++..+.++.+..++++..+++.+++.+.+|.+.++|++|+++|+||+.|.+.+.
T Consensus 218 ~p~~~~~g~p~--f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~ 295 (389)
T PF00860_consen 218 LPSPFPFGWPS--FDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYS 295 (389)
T ss_dssp ---------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-H
T ss_pred ccccccccccc--ccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCcccc
Confidence 221 22222 3334444444443333333444444444444433333667899999999999999999999999888
Q ss_pred chhhHhhhcCCCchhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCc
Q 006138 388 SRSAVNFNAGCKTAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDK 455 (659)
Q Consensus 388 srS~v~~~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~ 455 (659)
.+.+.-..+|+++|.+++.++++.+++.++ ++|++..||.++++|..++ .++++-...++.+-..+.
T Consensus 296 en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~ 364 (389)
T PF00860_consen 296 ENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDL 364 (389)
T ss_dssp HHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS
T ss_pred ccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheeccc
Confidence 888888889999999999999998877664 8999999999998887766 344443455555543333
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.75 E-value=1.6e-18 Score=155.65 Aligned_cols=117 Identities=36% Similarity=0.667 Sum_probs=102.8
Q ss_pred CCCCCCCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHh
Q 006138 515 YPNANNVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDR 594 (659)
Q Consensus 515 ~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~ 594 (659)
|++.++.+++.|++++|+|+|+|++++++++.+.+...+.+.+ .....+.+||||++|++||++|+++|.++.+++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 4555667899999999999999999999999987654311000 12347999999999999999999999999999999
Q ss_pred cCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHH
Q 006138 595 RELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEA 633 (659)
Q Consensus 595 ~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~A 633 (659)
+|++++++++++++++.|+++|+.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 999999999999999999999999999999999999998
No 16
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.69 E-value=1.3e-14 Score=166.61 Aligned_cols=349 Identities=15% Similarity=0.093 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhC------CCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCC
Q 006138 87 LIAGITIASLAIPQGISYAKLAN------LPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNEN 160 (659)
Q Consensus 87 i~aGltv~~~~iPq~~aya~lag------lpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~ 160 (659)
+-|=+-+.+..+.-++||+.+.+ +...--|.|+.+++++|++||+.|..++|+++.+.+....+..--. ..
T Consensus 372 laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~---~~ 448 (900)
T TIGR00834 372 LAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCE---SN 448 (900)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHh---hc
Confidence 33444455667777888877632 4455669999999999999999999999999888876655443221 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCC-ccHH--------
Q 006138 161 PKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHA-TDVM-------- 231 (659)
Q Consensus 161 ~~~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~-~~~~-------- 231 (659)
..+|+...+++.++++++.++++.+...++++|+.+..-..|-.-++++.+...++.+...-..... .++.
T Consensus 449 ~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~ 528 (900)
T TIGR00834 449 GLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPK 528 (900)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 2468899999999999999999999999999999999999999999999999998887653210000 0000
Q ss_pred ---HHHH-----HH-----------HhhcCcCchhhHHHHHHHHHHHHHHHHhhhc--CCcc--chhccchhHHHHHHHH
Q 006138 232 ---SVMH-----SI-----------FSQTQRWRWESGVLGCGFLFFLLITRYFSKR--KPKF--FWISAMAPLTSVILGS 288 (659)
Q Consensus 232 ---~~~~-----~~-----------~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~--~~~~--~~i~~~~~Li~vi~~t 288 (659)
.... .. +...+..-..++++.+.++.+.+.++.+++. +++. ..+..++..++|++.+
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t 608 (900)
T TIGR00834 529 PQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMV 608 (900)
T ss_pred cccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHH
Confidence 0000 00 0000112233455556666555555544321 1111 1256678889999999
Q ss_pred HHHHHhcc-cCCCeEEeecCCCCCCCCCCC--------ccc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 006138 289 LLVYLSHA-ERHGVQVIGYLKKGLNPPSFS--------DLV----FVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFK 355 (659)
Q Consensus 289 ~i~~~~~~-~~~~v~~vg~ip~g~p~~~~p--------~~~----~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~ 355 (659)
.+.|.++. +... -.+|.++.+ ..| .+. +.+.....++..|++++++-|+|+-.++....++.
T Consensus 609 ~v~~~~~~v~~~k----l~Vp~~f~p-t~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e 683 (900)
T TIGR00834 609 LVDIFIGDTYTQK----LSVPSGLKV-TNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKE 683 (900)
T ss_pred HHHHHhccCcccc----cCCCCCcCC-CCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcc
Confidence 99997651 1111 135555542 222 111 12234577888899999999999866666554432
Q ss_pred C---cccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcC-----------------C-CchhHHHHHHHHHHHH
Q 006138 356 N---YHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAG-----------------C-KTAVSNIVMSMAVMVT 414 (659)
Q Consensus 356 ~---~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G-----------------~-~T~la~iv~a~~~ll~ 414 (659)
+ +..-.+-+|+.+|+.|.++|+||-.+.+++..+|..+.++= + .+|+++++.++++.+.
T Consensus 684 ~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLigls 763 (900)
T TIGR00834 684 RKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLS 763 (900)
T ss_pred ccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHH
Confidence 2 22446889999999999999999999999999988877632 1 3589999999866555
Q ss_pred HHHhhhHhhhchHHHHHHHHHHHHhhccCh
Q 006138 415 LLFLTPLFHYTPLVVLSAIIMAAMLGLIDY 444 (659)
Q Consensus 415 ll~l~~l~~~iP~~vLa~ili~~~~~li~~ 444 (659)
+ ++.|++.+||++||.|+.++.|+.-+..
T Consensus 764 v-~~~PvL~~IP~aVL~GvFlYMGv~SL~G 792 (900)
T TIGR00834 764 I-LMEPILKRIPLAVLFGIFLYMGVTSLSG 792 (900)
T ss_pred H-HHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 4 6889999999999999999999876643
No 17
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.68 E-value=1.2e-16 Score=140.86 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=94.1
Q ss_pred CCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 520 NVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 520 ~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
+.+++.+++++|+|+|+|++.|++++.+.+++. +.+.+++||++|+|||+||+++|.++.++++++|+++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~----------~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l 74 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIERR----------PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEV 74 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHhC----------CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEE
Confidence 356899999999999999999999998876532 4689999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHHHH
Q 006138 600 VLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAV 634 (659)
Q Consensus 600 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av 634 (659)
+++++++++++.|+++|+.+.+ ++|++.++|+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 75 IVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 9999999999999999999988 7999999874
No 18
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.67 E-value=3.4e-16 Score=138.73 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=92.3
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+|+|+|++++++++.+.+.+. +.+.||+||++|+|||+||+++|.++.++++++|++++
T Consensus 8 ~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~----------~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~ 77 (109)
T cd07041 8 WDGVLVLPLIGDLDDERAEQLQERLLEAISRR----------RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTI 77 (109)
T ss_pred eCCEEEEeeeeeECHHHHHHHHHHHHHHHHHc----------CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEE
Confidence 46799999999999999999999987765432 46899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHH
Q 006138 601 LANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAV 634 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av 634 (659)
++++++++++.|+++|+.+ +..++|+|++||+
T Consensus 78 l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 78 LTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 9999999999999999987 3348999999985
No 19
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.65 E-value=8.5e-14 Score=155.79 Aligned_cols=336 Identities=13% Similarity=0.145 Sum_probs=230.8
Q ss_pred HHHHHHHhC------CCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHH
Q 006138 101 GISYAKLAN------LPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFF 174 (659)
Q Consensus 101 ~~aya~lag------lpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 174 (659)
+++|+.+-| +...--|.|+.+++++|++||+.|..++|+++.+.++-..+..-- .+++.+|++..+.++++
T Consensus 377 ~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~---~~~~~dyl~~r~wVglW 453 (876)
T KOG1172|consen 377 AITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFC---KDNGLDYLAFRAWVGLW 453 (876)
T ss_pred HhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHH---hhCCCchhhHHHHHHHH
Confidence 566655432 333455999999999999999999999999888877655444322 12345788999999999
Q ss_pred HHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCc-c--H-HHH--HHHHHhhc------C
Q 006138 175 AGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHAT-D--V-MSV--MHSIFSQT------Q 242 (659)
Q Consensus 175 ~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~-~--~-~~~--~~~~~~~~------~ 242 (659)
+.++.+++..+....+++|+.+..-..|-.-|+++.+...++.+.++....... + . ... ...-..+. .
T Consensus 454 ~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (876)
T KOG1172|consen 454 TAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTLLGS 533 (876)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCcccCCC
Confidence 999999999999999999999999999999999999999999777653211000 0 0 000 00000000 0
Q ss_pred cCchhhHHHH----HHHHHHHHHHHHhhh--cCCcc--chhccchhHHHHHHHHHHHHHhc-ccCCCeEEeecCCCCCCC
Q 006138 243 RWRWESGVLG----CGFLFFLLITRYFSK--RKPKF--FWISAMAPLTSVILGSLLVYLSH-AERHGVQVIGYLKKGLNP 313 (659)
Q Consensus 243 ~~~~~~~~ig----~~~l~~l~~~~~~~~--~~~~~--~~i~~~~~Li~vi~~t~i~~~~~-~~~~~v~~vg~ip~g~p~ 313 (659)
.+...+.+++ +.++.+-+.+|++++ .++++ .++..++..++|++.+.+.|..+ .+..++. .|.++|+
T Consensus 534 ~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~~~~ 609 (876)
T KOG1172|consen 534 SCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSVFPP 609 (876)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcCCCC
Confidence 1112233333 333333333333221 11111 23566778889999999998875 2333332 3333332
Q ss_pred CCC--------CccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC---cccCCchHHHHHhhhhhhhhccCCcc
Q 006138 314 PSF--------SDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKN---YHIDGNKEMIAFGMMNIAGSCTSCYL 382 (659)
Q Consensus 314 ~~~--------p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~---~~~d~nqEl~a~Gi~Ni~~s~fg~~p 382 (659)
+.. |.-+..+..+..++..+++++++-|+|+-.++....++.+ +....+-+|+-+|+.|+++|+||-.+
T Consensus 610 t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllGLPw 689 (876)
T KOG1172|consen 610 TWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLGLPW 689 (876)
T ss_pred CCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcCCCc
Confidence 211 1112334567888889999999999999666665544332 23456789999999999999999999
Q ss_pred cccccchhhHhhhcCC------------------CchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccCh
Q 006138 383 TTGPFSRSAVNFNAGC------------------KTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDY 444 (659)
Q Consensus 383 ~~~s~srS~v~~~~G~------------------~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~ 444 (659)
.+++..+|..+.++=+ ..|++|++.++++. +..++.|++..||++||.|+..+.++.-+..
T Consensus 690 ~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvg-ls~~~~pvL~~IP~~VL~GvFlYMgv~SL~G 768 (876)
T KOG1172|consen 690 SNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVG-LSVLLLPVLKLIPMPVLYGVFLYMGVSSLPG 768 (876)
T ss_pred cccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHhhccCCc
Confidence 9999999988877322 35899999999888 4447999999999999999999999976543
No 20
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.60 E-value=4e-15 Score=129.72 Aligned_cols=92 Identities=15% Similarity=0.250 Sum_probs=84.0
Q ss_pred CCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 520 NVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 520 ~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
+.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||++|+|||+||+++|.++.++++++|+++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l 74 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQF 74 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEE
Confidence 45789999999999999999999999876542 24689999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCcccc
Q 006138 600 VLANPGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 600 ~l~~~~~~v~~~L~~~g~~~~~ 621 (659)
.++++++++++.|+++|+.+.+
T Consensus 75 ~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 75 VLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEECCCHHHHHHHHHhCchhhh
Confidence 9999999999999999997754
No 21
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.59 E-value=8.9e-13 Score=139.83 Aligned_cols=342 Identities=17% Similarity=0.174 Sum_probs=205.9
Q ss_pred hhHHHHHHHHHHHhhhH--HHH--HHHhCCCccc---h----hhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhh
Q 006138 85 ADLIAGITIASLAIPQG--ISY--AKLANLPPIL---G----LYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQ 153 (659)
Q Consensus 85 ~Di~aGltv~~~~iPq~--~ay--a~laglpp~~---G----L~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~ 153 (659)
.-+.||+...++..--. +-+ +.-.|+++.. . ..++.+.+++.+.. .+.+++.+++..-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchHHHHHHHhcCC
Confidence 45667777766432211 112 2335777652 1 23444556666555 36788888764444444333322
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHH
Q 006138 154 EVNYNENPKLYLHLAFTATFFAGVFQASLGLLR-LGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMS 232 (659)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~r-lg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~ 232 (659)
.. +..+....+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.+...-++.+..
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 21 4667788899999999999999 5999999999999999999988876543332210
Q ss_pred HHHHHHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCC
Q 006138 233 VMHSIFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGLN 312 (659)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p 312 (659)
...+++..++..++.|++ .|+ ++.++++++|+++++..+.... + .+...++
T Consensus 160 ---------------~pll~~~mll~~l~~~r~---~Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~l~ 210 (395)
T TIGR00843 160 ---------------LFLICFSMLLCWLASKAF---APR------YAMIAALICGIAFSFALGDMNP--T---DLDFKIA 210 (395)
T ss_pred ---------------hHHHHHHHHHHHHHHHHh---cch------HHHHHHHHHHHHHHHHhcCCCc--c---ccccccc
Confidence 112333333333333321 232 3778999999999988763211 1 1111232
Q ss_pred C--CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcc------cc
Q 006138 313 P--PSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYL------TT 384 (659)
Q Consensus 313 ~--~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p------~~ 384 (659)
. +..|++++ ...+..++...++.+.....-+-...+..||+.+.++-+.+.|++|+++++|||++ ++
T Consensus 211 ~p~~~~P~fs~-----~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaita 285 (395)
T TIGR00843 211 LPQFIAPDFSF-----AHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITA 285 (395)
T ss_pred cceeeCCCCCH-----HHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhH
Confidence 2 33555543 23444455555555543322223344568899999999999999999999999999 33
Q ss_pred cccchhhHhhhcCCCchhHHHHHHHHHHHHHHH---hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCc-cc--e
Q 006138 385 GPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLF---LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDK-FD--F 458 (659)
Q Consensus 385 ~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~-~d--~ 458 (659)
.-+.....+.+ ++|+-.+++..|++.+++.++ +..++..+|....+++-=.+.++-+. ..+..-.+.++ .| .
T Consensus 286 Aic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~~~~~r~~a~ 363 (395)
T TIGR00843 286 AICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALHEDQERDAAL 363 (395)
T ss_pred HHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHH
Confidence 32222333333 788999999999999988877 55688999999888766555555442 22333332222 12 2
Q ss_pred ehhhhhhhhhhhhch---hhhHHHHHHHH
Q 006138 459 IVCIGAYVGVVFGSI---QIGLVIAISIS 484 (659)
Q Consensus 459 ~v~~~t~~~~~~~~~---~~Gl~~Gv~~s 484 (659)
+.+++|.-..-++|+ .+|+++|+...
T Consensus 364 ~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 364 IAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 233344444444443 46888886543
No 22
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.44 E-value=2.7e-13 Score=119.80 Aligned_cols=100 Identities=27% Similarity=0.380 Sum_probs=90.8
Q ss_pred CCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 520 NVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 520 ~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
..+++.+++++|+++|.|++.+++.+.+..+. +..+.+++||+++++|||+|+++|.++.++++++|+++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~ 78 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQL 78 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEE
Confidence 34689999999999999999999999886653 24789999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHH
Q 006138 600 VLANPGAEVTKKLDKSKFIENMGQEWIYLTVGE 632 (659)
Q Consensus 600 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~ 632 (659)
.++++++++++.|+++|+.+.+ .+|+|+++
T Consensus 79 ~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 79 VLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 9999999999999999999988 68888653
No 23
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.42 E-value=1.5e-12 Score=114.45 Aligned_cols=101 Identities=37% Similarity=0.684 Sum_probs=88.6
Q ss_pred CCCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCE
Q 006138 519 NNVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELK 598 (659)
Q Consensus 519 ~~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~ 598 (659)
...+++.+++++|+++|.|++.+++++.+..+.. +..+.+|+||++++++|++|+++|.++.++++++|++
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~ 75 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE 75 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 3456899999999999999999999988765421 1247899999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHhCCCccccCCcceec
Q 006138 599 LVLANPGAEVTKKLDKSKFIENMGQEWIYL 628 (659)
Q Consensus 599 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~ 628 (659)
+.++++++.+++.+++.|+.+.++.+..+.
T Consensus 76 ~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 76 LYLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 999999999999999999998887655443
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.40 E-value=4e-10 Score=117.60 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCc
Q 006138 165 LHLAFTATFFAGVFQASLGLLR-LGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQR 243 (659)
Q Consensus 165 ~~~~~~~~~l~Gi~~l~lg~~r-lg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 243 (659)
+..+...-+++|++.++.|+.+ ++++++.+|.++..++++|+-+-....-++.+-
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~------------------------ 142 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQ------------------------ 142 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 4556777788999999999999 599999999999999999998877655443321
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCCCC--CCCcccc
Q 006138 244 WRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGLNPP--SFSDLVF 321 (659)
Q Consensus 244 ~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p~~--~~p~~~~ 321 (659)
....+....++..++.|++.+|+ +.+.+++.+.++++..+.-. . ..++..++.| ..|.+++
T Consensus 143 ---~~P~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~~p~~~~P~Fs~ 205 (378)
T PF03594_consen 143 ---ADPLLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLAHPVFTTPEFSW 205 (378)
T ss_pred ---hHHHHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccceeEEECCcccH
Confidence 01122333333334445444444 45667777777777654211 1 1122233333 3455543
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhh--cC--
Q 006138 322 VSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFN--AG-- 397 (659)
Q Consensus 322 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~--~G-- 397 (659)
...+.+++.+.++.+.....-+-.+-+.+||+.+.|+-+...|++|++.+.|||++.+-+-.-+++... ++
T Consensus 206 -----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~d 280 (378)
T PF03594_consen 206 -----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHPD 280 (378)
T ss_pred -----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCCC
Confidence 456667778888888766666666677899999999999999999999999999998876666666554 23
Q ss_pred -CCchhHHHHHHHHHHHHHHH---hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCc-cc--eehhhhhhhhhhh
Q 006138 398 -CKTAVSNIVMSMAVMVTLLF---LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDK-FD--FIVCIGAYVGVVF 470 (659)
Q Consensus 398 -~~T~la~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~-~d--~~v~~~t~~~~~~ 470 (659)
.|--.+++++|+..+++.+| +..++.-+|.+..+.+-=.+.++-+. ..+..-++.++ .| .+.+++|.-..-+
T Consensus 281 p~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~~r~aAlvtFlvtaSGisl 359 (378)
T PF03594_consen 281 PSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEKYREAALVTFLVTASGISL 359 (378)
T ss_pred cccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHHHHHHHHHcCCCc
Confidence 34458899999998888877 55678899999887765555555442 33444444332 22 2233344444444
Q ss_pred hc---hhhhHHHHHHHHH
Q 006138 471 GS---IQIGLVIAISISV 485 (659)
Q Consensus 471 ~~---~~~Gl~~Gv~~sl 485 (659)
+| -.+|+++|++..+
T Consensus 360 ~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 360 LGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 44 3468888887653
No 25
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.33 E-value=2.4e-13 Score=148.86 Aligned_cols=350 Identities=11% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhHHHHHHHhC------CCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChh
Q 006138 89 AGITIASLAIPQGISYAKLAN------LPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPK 162 (659)
Q Consensus 89 aGltv~~~~iPq~~aya~lag------lpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 162 (659)
+=+-..+..+.-+++|+.+-+ +...-.|.++.+++++|++||+.|..++|+++.+.+.......--. +...
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~---~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCK---SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 334445566777788866532 4444568999999999999999999999999988765543332111 1224
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCC-CccH---H-------
Q 006138 163 LYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTH-ATDV---M------- 231 (659)
Q Consensus 163 ~~~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~-~~~~---~------- 231 (659)
+|++.-....++++++.++++.+...++++|+.+..-..|-.-++++.+...++.+..+-.... ..+. .
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5788888999999999999999999999999999999999999999999999988875521100 0000 0
Q ss_pred -----------H-------HHHHH----Hhhc------------CcCc----hhhHHHHHHHHHHHHHHHHhhhc--CCc
Q 006138 232 -----------S-------VMHSI----FSQT------------QRWR----WESGVLGCGFLFFLLITRYFSKR--KPK 271 (659)
Q Consensus 232 -----------~-------~~~~~----~~~~------------~~~~----~~~~~ig~~~l~~l~~~~~~~~~--~~~ 271 (659)
. .+... ..+. .+.. ..++++.+.++.+...++.+++. +++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 0 00000 0000 0111 12333444444443333332211 111
Q ss_pred --cchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCCCC-------CCCcc-ccchhHHHHHHHHHHHHHHHHH
Q 006138 272 --FFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGLNPP-------SFSDL-VFVSPYLTTAIKTGIITGVIAM 341 (659)
Q Consensus 272 --~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p~~-------~~p~~-~~~~~~~~~~~~~~i~~~iv~~ 341 (659)
...+..++..++|++.+.+.+.++.+.... ++|.++.+. .++.+ +........++..++.++++-+
T Consensus 275 ~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F 350 (510)
T PF00955_consen 275 WVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFF 350 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 113566778888888888887765322222 233333211 01111 1111234456666888899999
Q ss_pred HHHHHHhhhhhcccC---cccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCC------------------Cc
Q 006138 342 AEGIAVGRSFAMFKN---YHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGC------------------KT 400 (659)
Q Consensus 342 ~~~~~~~~~~~~~~~---~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~------------------~T 400 (659)
+|+-.++....++.+ +..-.+-+|+.+|+.|.++|++|-.+.+++..+|..+.++=. .+
T Consensus 351 ~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~Eq 430 (510)
T PF00955_consen 351 MDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQ 430 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEe
Confidence 998555554433222 224457789999999999999999999999999988766322 45
Q ss_pred hhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHH
Q 006138 401 AVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEA 446 (659)
Q Consensus 401 ~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~ 446 (659)
|+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++..+
T Consensus 431 RvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~gnq 475 (510)
T PF00955_consen 431 RVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSGNQ 475 (510)
T ss_dssp ----------------------------------------------
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecCcc
Confidence 899999998776555 678999999999999999999987665443
No 26
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.29 E-value=1.5e-11 Score=106.41 Aligned_cols=90 Identities=27% Similarity=0.357 Sum_probs=82.1
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+++|+|++.+++.+.+..++ ..+.+++||++++++|++|+++|.++.++++++|.++.
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~-----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE-----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc-----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 3578999999999999999999998775432 25899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCcccc
Q 006138 601 LANPGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~ 621 (659)
++++++++++.|+++|+.+.+
T Consensus 75 i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 75 LVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEcCCHHHHHHHHHhCcceee
Confidence 999999999999999998765
No 27
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.23 E-value=4.8e-11 Score=107.08 Aligned_cols=99 Identities=23% Similarity=0.320 Sum_probs=87.0
Q ss_pred EEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc
Q 006138 524 VLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN 603 (659)
Q Consensus 524 i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~ 603 (659)
..++.+.|.|+..|+..+++.+.+.+... +.+.+++|++.|+||||+|++.|....+.++..|+++.+++
T Consensus 14 ~~vl~l~G~lD~~~a~~~~e~~~~~~~~~----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~ 83 (117)
T COG1366 14 ILVLPLIGELDAARAPALKETLLEVIAAS----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVG 83 (117)
T ss_pred EEEEEeeEEEchHHHHHHHHHHHHHHhcC----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 37999999999999999999999776643 45669999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCccccCCcceecCHHHHHH
Q 006138 604 PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVT 635 (659)
Q Consensus 604 ~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~ 635 (659)
++|++++.++.+|+.+.+ .++++.+++..
T Consensus 84 i~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 84 IQPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred CCHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 999999999999998776 45555554443
No 28
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.17 E-value=2.1e-09 Score=113.94 Aligned_cols=306 Identities=11% Similarity=0.091 Sum_probs=191.4
Q ss_pred chhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHh--hhccCCC----Chhh---HHHHHHHHHHHHHHHHHHHHh
Q 006138 114 LGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLG--QEVNYNE----NPKL---YLHLAFTATFFAGVFQASLGL 184 (659)
Q Consensus 114 ~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~--~~~~~~~----~~~~---~~~~~~~~~~l~Gi~~l~lg~ 184 (659)
.-++++.+.+++...||++.++..||+-..-..+-+++. +...+.+ +.+. .++..-.+.++++++|.++|+
T Consensus 54 T~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~ 133 (510)
T KOG1292|consen 54 TIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGF 133 (510)
T ss_pred HHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 357888999999999999999999996665444444444 2221111 1111 245566888999999999999
Q ss_pred hhh-hhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCcCchhhHHHHHHHHHHHHHHH
Q 006138 185 LRL-GFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQRWRWESGVLGCGFLFFLLITR 263 (659)
Q Consensus 185 ~rl-g~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~ 263 (659)
.++ |++.+|+++-.+.=.++.+|+.+.....+.+ - -+| -+|+..++++++..
T Consensus 134 sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~-------------------~-----~~w---eI~l~~~llli~fs 186 (510)
T KOG1292|consen 134 SGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL-------------------G-----KHW---EISLPEILLLILFS 186 (510)
T ss_pred hhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh-------------------h-----hhe---eecHHHHHHHHHHH
Confidence 996 9999999999988888888876653322211 0 011 13444444443333
Q ss_pred Hh---hhcCC---ccchhccchhHHHHHHHHHHHHHhc---ccCC-----Ce----E---EeecCCC-CCCC-CCCCccc
Q 006138 264 YF---SKRKP---KFFWISAMAPLTSVILGSLLVYLSH---AERH-----GV----Q---VIGYLKK-GLNP-PSFSDLV 320 (659)
Q Consensus 264 ~~---~~~~~---~~~~i~~~~~Li~vi~~t~i~~~~~---~~~~-----~v----~---~vg~ip~-g~p~-~~~p~~~ 320 (659)
.+ .++.. +...+.-++.++++.+..++++++- ..++ +. + ....-|. ..|. .++....
T Consensus 187 qy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~ 266 (510)
T KOG1292|consen 187 QYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPT 266 (510)
T ss_pred HhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCc
Confidence 22 11111 1111122345667777777666652 1111 00 0 1111111 1222 1222223
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccch-hhHhhhcCCC
Q 006138 321 FVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSR-SAVNFNAGCK 399 (659)
Q Consensus 321 ~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~sr-S~v~~~~G~~ 399 (659)
|+......++..+++..+++..+-.+.+|.......-....||....+|++.+++|+||.-.++..++. -++-.-+...
T Consensus 267 f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTKVg 346 (510)
T KOG1292|consen 267 FSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTKVG 346 (510)
T ss_pred ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeeeee
Confidence 444555566655555555666556677777666666677889999999999999999997655544443 3444447788
Q ss_pred chhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHH
Q 006138 400 TAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAV 447 (659)
Q Consensus 400 T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~ 447 (659)
||..--++|.+++++..+ ++.+|..||.++.||+.-. +++|+.--.+
T Consensus 347 SRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~-~~~mv~avgL 395 (510)
T KOG1292|consen 347 SRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCI-LFGMVGAVGL 395 (510)
T ss_pred eeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH-HHHHHHHHhh
Confidence 888888888888887766 8999999999999998766 6666643333
No 29
>PF13466 STAS_2: STAS domain
Probab=99.05 E-value=6e-10 Score=92.70 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=73.5
Q ss_pred EEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCH
Q 006138 527 LKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGA 606 (659)
Q Consensus 527 irl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~ 606 (659)
+++.|++++.+++.+++.+.++++. + +.+++|+++|++||++|+++|..+.+.++++|.++.+.++++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~-----------~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~ 68 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS-----------G-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSP 68 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC-----------C-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4789999999999999999987631 2 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 006138 607 EVTKKLDKSKF 617 (659)
Q Consensus 607 ~v~~~L~~~g~ 617 (659)
.+++.++..|+
T Consensus 69 ~~~~ll~~~gl 79 (80)
T PF13466_consen 69 ALRRLLELLGL 79 (80)
T ss_pred HHHHHHHHhCc
Confidence 99999999987
No 30
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.93 E-value=4.2e-07 Score=93.04 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCc
Q 006138 165 LHLAFTATFFAGVFQASLGLLR-LGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQR 243 (659)
Q Consensus 165 ~~~~~~~~~l~Gi~~l~lg~~r-lg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 243 (659)
...+..+-+.+|...++.|++| ++++++-+|+++-.+.++|+=+-+....++.+-
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~------------------------ 157 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALP------------------------ 157 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccC------------------------
Confidence 3456677788999999999999 699999999999999999987777655554321
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCC--CCCCCCcccc
Q 006138 244 WRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGL--NPPSFSDLVF 321 (659)
Q Consensus 244 ~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~--p~~~~p~~~~ 321 (659)
.+ . .+.+..+...++.|.+.+|+ +...++++|+.++...+.-.. +...... |.+..|++++
T Consensus 158 ~~--p-~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 158 TQ--P-LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred CC--h-HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 11 1 22222223334445555554 556777888888777653111 1111112 2233454443
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhc-----
Q 006138 322 VSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNA----- 396 (659)
Q Consensus 322 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~----- 396 (659)
..++.+++.++++.+...-.-+-.+-+.+||+.+++--+.+.|+..+.++.||++.++-.-...++...-
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD 295 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPD 295 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCC
Confidence 4566677777888776654444455567999999999999999999999999998766433322222211
Q ss_pred CCCchhHHHHHHHHHHHHHHH---hhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccC-ccce--ehhhhhhhhhhh
Q 006138 397 GCKTAVSNIVMSMAVMVTLLF---LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVD-KFDF--IVCIGAYVGVVF 470 (659)
Q Consensus 397 G~~T~la~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~-~~d~--~v~~~t~~~~~~ 470 (659)
-.|.-.+++++|+.-+++.+| +..++.-+|++..+.+-=.+..+-+. ..+..-.+.. ..|. +.+++|.-..-+
T Consensus 296 ~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~-~~l~~A~~~~~~R~aAlvtF~VTaSG~tl 374 (402)
T COG3135 296 PARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLG-NSLQAALKDEREREAALVTFLVTASGLTL 374 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHhcCcccchhhhhheeehhcccee
Confidence 135568999999999988888 44567889998766543333333221 2233333322 2222 223344444445
Q ss_pred hch---hhhHHHHHHHH
Q 006138 471 GSI---QIGLVIAISIS 484 (659)
Q Consensus 471 ~~~---~~Gl~~Gv~~s 484 (659)
+|+ .+|++.|...-
T Consensus 375 ~GIgaafWGLvaG~~~~ 391 (402)
T COG3135 375 FGIGAAFWGLVAGLLVL 391 (402)
T ss_pred ecccHHHHHHHHHHHHH
Confidence 543 35777776553
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.30 E-value=0.00035 Score=72.19 Aligned_cols=250 Identities=15% Similarity=0.181 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh-hHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHHHHhhcCcCchh
Q 006138 169 FTATFFAGVFQASLGLLRLG-FIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHSIFSQTQRWRWE 247 (659)
Q Consensus 169 ~~~~~l~Gi~~l~lg~~rlg-~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (659)
.++.++.|++-++++++|-| ++++.-++-|-+|.+--.|+.=..+|++.++..... .+ ..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~----------------~~-~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANG----------------FD-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhc----------------cC-ccHH
Confidence 35678899999999999975 778999999999977777777778888876533211 11 1122
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCCCCC------------
Q 006138 248 SGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLKKGLNPPS------------ 315 (659)
Q Consensus 248 ~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p~~~------------ 315 (659)
.+++-++++++-. ++.|..+++.-+| +.-+++.++++..+.+ ++.. -+.|+|...
T Consensus 208 ~fvvi~~tiv~Ya---~L~k~~KrWLaIP-----l~~~~a~~~a~~lGa~---f~f~--t~pglp~lnP~YWWge~tGw~ 274 (492)
T PF11840_consen 208 AFVVIIVTIVLYA---YLAKIEKRWLAIP-----LCSILAGVLAFALGAP---FEFT--TEPGLPNLNPMYWWGEETGWQ 274 (492)
T ss_pred HHHHHHHHHHHHH---HHHHhccchhhhh-----HHHHHHHHHHHHcCCC---ceee--cCCCCCCCCCcccccCCcccc
Confidence 2222222322222 2333333333233 3334455556666542 2211 122333211
Q ss_pred --CCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------ccCcccCCchHHHHHhhhhhhhhccCCccccccc
Q 006138 316 --FSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAM------FKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPF 387 (659)
Q Consensus 316 --~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~------~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~ 387 (659)
+|. .+.+...+|.++.....=--|.++- +.|.+ .++...|.|+.+....+-|++|+.+||--.++|.
T Consensus 275 LglP~----~~hfiav~PFAiLAVaMWSpDflgh-rvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsW 349 (492)
T PF11840_consen 275 LGLPT----LEHFIAVLPFAILAVAMWSPDFLGH-RVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSW 349 (492)
T ss_pred cCCCc----HHHHHHhccHHHHHHHHhCchHHHH-HHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccc
Confidence 121 1334555555443222111122221 23322 1233478899999999999999999997655554
Q ss_pred chhhHhhhcCCCc--hhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhh-ccChHHHHHHhccCcc
Q 006138 388 SRSAVNFNAGCKT--AVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLG-LIDYEAVIHLFKVDKF 456 (659)
Q Consensus 388 srS~v~~~~G~~T--~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~~~~~~ 456 (659)
..-.+-.. =+|. |-..+.+|++++++.+..-|.=-.+=.+++...+++-++- +.+ .. -++||.+|.
T Consensus 350 gTymIPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLle-AG-mqm~r~~k~ 418 (492)
T PF11840_consen 350 GTYMIPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLE-AG-MQMTRKGKT 418 (492)
T ss_pred hhhhhhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHH-HH-HHHHhcCCc
Confidence 43333332 2333 5567888888888887766642223334555556664332 221 22 245665554
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.65 E-value=0.00019 Score=60.43 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=67.3
Q ss_pred EEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006138 526 ILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG 605 (659)
Q Consensus 526 Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~ 605 (659)
.+.+.|+|+=...-.+-+...+. .+....+-+|+++|.-+||+|+..|.++.+.++++|..+.+++++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~------------~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQ------------LKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHH------------ccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 46788998755544443333221 123478999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 006138 606 AEVTKKLDKSKFIENM 621 (659)
Q Consensus 606 ~~v~~~L~~~g~~~~~ 621 (659)
++++...+..|+.+.+
T Consensus 81 ~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 81 EQLRTLAELYNLSDWL 96 (99)
T ss_pred HHHHHHHHHhCcHhhh
Confidence 9999999998886544
No 33
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=93.78 E-value=0.29 Score=53.81 Aligned_cols=43 Identities=12% Similarity=-0.081 Sum_probs=25.0
Q ss_pred HHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHH
Q 006138 367 AFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSM 409 (659)
Q Consensus 367 a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a~ 409 (659)
..-.++=++++++++-++...+-..-|....+.|+.++-..+.
T Consensus 273 r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~~sr~~~~ 315 (415)
T TIGR00801 273 RGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRVASRWVIV 315 (415)
T ss_pred chHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCCCchHHHH
Confidence 4445555666666666555555555555566666666666444
No 34
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=93.31 E-value=0.051 Score=47.51 Aligned_cols=106 Identities=5% Similarity=-0.043 Sum_probs=64.7
Q ss_pred cEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEec-CCCccchHHHHHHHHHHHHHHhcCCEEEE
Q 006138 523 GVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMG-AVGNIDTSGISMLEEVKKTLDRRELKLVL 601 (659)
Q Consensus 523 ~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s-~V~~IDsSgl~~L~~l~~~~~~~gi~l~l 601 (659)
++..++++|.++-...+.+.+.+.+.+++ .+.-.+.+|++ .+..++..+.....++......+=.++.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~Av 70 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIAD----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAV 70 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTT----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhc----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEE
Confidence 46789999999888877777777775542 24578999999 88888876655444333221122237788
Q ss_pred EcCCHHHHHHHHhCCCccccCCccee--cCHHHHHHHHHh
Q 006138 602 ANPGAEVTKKLDKSKFIENMGQEWIY--LTVGEAVTACNF 639 (659)
Q Consensus 602 ~~~~~~v~~~L~~~g~~~~~~~~~if--~s~~~Av~~~~~ 639 (659)
++.++-.+...+..+.. .-.+.++| .+.++|.+|+++
T Consensus 71 V~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 71 VGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp E-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC-
T ss_pred EECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHcC
Confidence 77655333322222221 11234899 999999999863
No 35
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.92 E-value=0.3 Score=42.37 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=59.5
Q ss_pred EEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHhh
Q 006138 567 VILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 567 vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
+++|+.+|-+-+...+.-=.+..+.++++|.++++...+ .+..+.|+..|+. +.+++++.+...+.++++.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 589999999999988888899999999999999887443 4788999999985 45679999999999998885
No 36
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=89.94 E-value=10 Score=43.59 Aligned_cols=111 Identities=9% Similarity=0.080 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhh-------cCC
Q 006138 326 LTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFN-------AGC 398 (659)
Q Consensus 326 ~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~-------~G~ 398 (659)
+..=+..++..+++.+-++++.+... ..++...|++-.+..++.++||+.+....-.-++...- .|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~la------glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAILA------GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHc------CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 44444566777888888888876532 35677789999999999999999886554443333222 222
Q ss_pred C-ch---------hHHHHHHHHHHHHHHH-hhhHhhhchHHHHHHHHHHHHhhcc
Q 006138 399 K-TA---------VSNIVMSMAVMVTLLF-LTPLFHYTPLVVLSAIIMAAMLGLI 442 (659)
Q Consensus 399 ~-T~---------la~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 442 (659)
. .. ..++++|++.+++.++ ++-+.+++|.+++.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 21 6677778877777666 8899999999999998776666554
No 37
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=89.72 E-value=13 Score=40.75 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred HHHHHHhhhHHH----HHHHhCCCc-----cchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChh
Q 006138 92 TIASLAIPQGIS----YAKLANLPP-----ILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPK 162 (659)
Q Consensus 92 tv~~~~iPq~~a----ya~laglpp-----~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 162 (659)
+++++.+-++++ .+...|-++ .-++.+-.+++++-++||+.+...........-.. +.. .
T Consensus 226 ~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~t-----g~~----s-- 294 (406)
T TIGR03173 226 IVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLT-----GVK----S-- 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHh-----CCC----c--
Confidence 444555554443 444566432 27899999999999999987644332211111111 100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHhH
Q 006138 163 LYLHLAFTATFFAGVFQASLGLL-RLGFIVDFLSHAAIVGFMGG 205 (659)
Q Consensus 163 ~~~~~~~~~~~l~Gi~~l~lg~~-rlg~l~~~ip~~vi~Gf~~g 205 (659)
+ .....+|++.+++|++ +++.+...+|.||+.|.+..
T Consensus 295 ---r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~ 332 (406)
T TIGR03173 295 ---R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV 332 (406)
T ss_pred ---h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 1 1336678888888887 58999999999999995543
No 38
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=89.07 E-value=6.4 Score=44.94 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhh--cCC----Cc--
Q 006138 329 AIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFN--AGC----KT-- 400 (659)
Q Consensus 329 ~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~--~G~----~T-- 400 (659)
=+.-++..+++.+=++++.+.. .| .++...|++-=++-++-++||+.|.-.+-..++.... +.. .+
T Consensus 24 Dl~AGltva~valP~ama~a~~----aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~ 97 (554)
T COG0659 24 DLLAGLTVAAVALPLAMAFAIA----AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGL 97 (554)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH----cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHH
Confidence 3445666777777777777662 22 8899999999999999999999986543333222221 111 12
Q ss_pred ---hhHHHHHHHHHHHHHHH-hhhHhhhchHHHHHHHHHHHHhhcc
Q 006138 401 ---AVSNIVMSMAVMVTLLF-LTPLFHYTPLVVLSAIIMAAMLGLI 442 (659)
Q Consensus 401 ---~la~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 442 (659)
-.+.+.+|++.+++.++ ++-+.+++|.+|+.|.+--.++-++
T Consensus 98 ~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 98 ALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 34556666666666555 8899999999999998765555443
No 39
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=88.94 E-value=11 Score=41.74 Aligned_cols=118 Identities=6% Similarity=-0.091 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhhH----HHHHHHhCCCc------cchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhcc
Q 006138 87 LIAGITIASLAIPQG----ISYAKLANLPP------ILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVN 156 (659)
Q Consensus 87 i~aGltv~~~~iPq~----~aya~laglpp------~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~ 156 (659)
++.-+.++++.+-+. .|-+.+.+-++ .-|+..-.+++++-++||+.+..+.+-...+.-++ +..
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~T-----gV~- 315 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQT-----GDY- 315 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhc-----CCc-
Confidence 444444444444343 33344544432 36899999999999999987665443322211111 110
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhh-hhhhHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCc
Q 006138 157 YNENPKLYLHLAFTATFFAGVFQASLGLL-RLGFIVDFLSHAAIVGFMGGAATVVCLQQLKGILGL 221 (659)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~-rlg~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~ 221 (659)
.=.....+|++++++|++ |++.++.-+|.||++|.....--.+..++++.+-+.
T Consensus 316 -----------SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~~ 370 (433)
T PRK11412 316 -----------RRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQI 370 (433)
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 012445678899999988 589999999999999988777777777777766443
No 40
>PRK10720 uracil transporter; Provisional
Probab=88.80 E-value=1.9 Score=47.60 Aligned_cols=104 Identities=12% Similarity=-0.009 Sum_probs=81.0
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchh
Q 006138 311 LNPPSFSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRS 390 (659)
Q Consensus 311 ~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS 390 (659)
.++..+|.+.. ++.=...+...+..+++.+.|+++...+.++..+++...++++...=.++=++++++++-++...+-.
T Consensus 209 a~~~~lP~~~~-P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty 287 (428)
T PRK10720 209 AHWFALPTFYT-PRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTY 287 (428)
T ss_pred CccccCCCCCC-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCcccc
Confidence 34466676533 23323444566778889999999999999988777664577888888999999999999988888889
Q ss_pred hHhhhcCCCchhHHHHHHHHHHHHH
Q 006138 391 AVNFNAGCKTAVSNIVMSMAVMVTL 415 (659)
Q Consensus 391 ~v~~~~G~~T~la~iv~a~~~ll~l 415 (659)
+-|...+++|+.++-....+-..++
T Consensus 288 ~en~g~ia~T~v~sr~v~~~a~~~l 312 (428)
T PRK10720 288 GENIGVMAITRVYSTWVIGGAAIIA 312 (428)
T ss_pred ccccceeeecccchhHHHHHHHHHH
Confidence 9999999999999998877555444
No 41
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=88.78 E-value=2.7 Score=34.04 Aligned_cols=66 Identities=18% Similarity=0.340 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHH-HHHHHHHHHH--hcCCEEEEEcCCHHHHHHHH
Q 006138 537 NASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGIS-MLEEVKKTLD--RRELKLVLANPGAEVTKKLD 613 (659)
Q Consensus 537 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~-~L~~l~~~~~--~~gi~l~l~~~~~~v~~~L~ 613 (659)
+..++++.+.+.+++. +.|+|||++++.+-+|=+. ++-.+.+++. +...++.+.|.++++.+.++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 4567788887766643 4599999999888887765 3334444332 22468889999999888877
Q ss_pred h
Q 006138 614 K 614 (659)
Q Consensus 614 ~ 614 (659)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 5
No 42
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=88.38 E-value=0.68 Score=44.88 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
.++-+.+|+|++-++.-.++--=.+..+.+++++..+.|+.. +..+.+.|++.||. +.++.+|.+...|.+.+
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~~ 83 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQYL 83 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHHH
Confidence 478899999999999988888788888999999999988743 34688899999993 45678999999999999
Q ss_pred Hhh
Q 006138 638 NFR 640 (659)
Q Consensus 638 ~~~ 640 (659)
+++
T Consensus 84 ~~~ 86 (262)
T KOG3040|consen 84 EEN 86 (262)
T ss_pred Hhc
Confidence 874
No 43
>PRK09928 choline transport protein BetT; Provisional
Probab=80.30 E-value=1.3e+02 Score=35.30 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc
Q 006138 540 YLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN 603 (659)
Q Consensus 540 ~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~ 603 (659)
.-|+|+.+.+....+ + .--.|+|.++.-+++|+.++++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p~~----------~------~~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYPGT----------R------YTRRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCCCH----------H------HHHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 478888886643211 0 02368999999999999999999999988864
No 44
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=77.08 E-value=9.1 Score=33.00 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=54.8
Q ss_pred EEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHH---HhcCCEEEE
Q 006138 525 LILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTL---DRRELKLVL 601 (659)
Q Consensus 525 ~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~---~~~gi~l~l 601 (659)
.++++.|.=+=-|+..|-+-+.++++..-+ .+.+.+.+++ .+.|+++|...+|.++.+.+ .++|.++.+
T Consensus 10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v 81 (99)
T PF09345_consen 10 GRLEISGESYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVTV 81 (99)
T ss_pred CEEEEecccCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 578889998889999999999999886521 1356788888 58999999999999998887 455777655
No 45
>PRK11660 putative transporter; Provisional
Probab=76.13 E-value=57 Score=37.49 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhc-------CC
Q 006138 326 LTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNA-------GC 398 (659)
Q Consensus 326 ~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~-------G~ 398 (659)
+..=+.-++..+++.+-++++.+.. + | ..+...|++--+..++.++||+.+....-.-+...... |.
T Consensus 29 l~~D~iAGltv~~~~iPq~mayA~l-a---g--~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~ 102 (568)
T PRK11660 29 FTRDLIAGITVGIIAIPLAMALAIA-S---G--VPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL 102 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-c---C--CChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHHhhH
Confidence 3333445677788888888887743 2 2 44455799999999999999998855433333221111 11
Q ss_pred C-chhHHHHHHHHHHHHHHH-hhhHhhhchHHHHHHHHHHHHhh
Q 006138 399 K-TAVSNIVMSMAVMVTLLF-LTPLFHYTPLVVLSAIIMAAMLG 440 (659)
Q Consensus 399 ~-T~la~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~ 440 (659)
. .-.+.+++|++.++..++ ++-+.+++|.+++.|.+.-+++-
T Consensus 103 ~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~ 146 (568)
T PRK11660 103 AGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIV 146 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHH
Confidence 1 123467778887777777 88899999999999887766654
No 46
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=73.93 E-value=1e+02 Score=31.05 Aligned_cols=53 Identities=28% Similarity=0.454 Sum_probs=40.6
Q ss_pred hhhhHhhHHHHHHHHHHHhhhHHHHHHHh---CCCccchhhhhhhhhhhhhhhcCCCcccc
Q 006138 80 FQFLKADLIAGITIASLAIPQGISYAKLA---NLPPILGLYSSFVPPLVYAIMGSSKDLAV 137 (659)
Q Consensus 80 ~~~l~~Di~aGltv~~~~iPq~~aya~la---glpp~~GL~s~~i~~liy~~fGss~~~~~ 137 (659)
.+.++..+.+++-+.+-.+|-|++|+.++ |+++ +++.....++|+ |+|..+.+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA--GasQfv~i 64 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA--GASQFVAI 64 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc--cHHHHHHH
Confidence 45689999999999999999999999986 5555 555667777887 55544433
No 47
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=73.27 E-value=6 Score=33.17 Aligned_cols=42 Identities=12% Similarity=0.348 Sum_probs=36.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhc-CCEEEEEcC
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR-ELKLVLANP 604 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~-gi~l~l~~~ 604 (659)
++...++|+.+..|+.|||+..|..+.-+.+++ ++++++-+-
T Consensus 45 ~ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs 87 (112)
T COG5439 45 DPSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGS 87 (112)
T ss_pred ChHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecC
Confidence 467799999999999999999999999888877 788877654
No 48
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=72.84 E-value=12 Score=41.26 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCeEEeecCCCCCCCCCCCcccc-chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCc
Q 006138 279 APLTSVILGSLLVYLSHAERHGVQVIGYLKKGLNPPSFSDLVF-VSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNY 357 (659)
Q Consensus 279 ~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip~g~p~~~~p~~~~-~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~ 357 (659)
.-.+.+++|.++.|...+ -.+...... ....|++.+|++.. ..+.-..++...+.++++.+.|++.--++.++..++
T Consensus 197 ~~~i~ILiGlv~G~~la~-~~G~vdf~~-v~~a~w~~~P~~~~fg~~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg~ 274 (451)
T COG2233 197 LRRIPILIGLVVGYLLAL-FMGMVDFSG-VAEAPWFALPTPFYFGMAFDWGAILTMLPVAIVTIVEHTGDITATGEITGR 274 (451)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCcCccc-cccCceeeCCcccCCCeeecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhCC
Confidence 456677777777777643 122111111 23467777776532 224445666778889999999999999999999999
Q ss_pred ccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCC--CchhHHHHHHHHHHHHH
Q 006138 358 HIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGC--KTAVSNIVMSMAVMVTL 415 (659)
Q Consensus 358 ~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~--~T~la~iv~a~~~ll~l 415 (659)
+.|.++.+..--.++=+++++++.-+ ++..|.-..+.|. -|+..+-........++
T Consensus 275 ~~~~~~~l~rg~~aDGlat~iag~fg--~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavil 332 (451)
T COG2233 275 DLDGKPRLRRGLLADGLATLIAGLFG--GFPNTTFAQNIGVVALTGVYSRYVIAGAAVIL 332 (451)
T ss_pred cCccCcccccceeeccHHHHHHHhcC--CCCCCchhhceeeeeeccCChhHHHHHHHHHH
Confidence 99999999999999999999998754 4666666666664 67777776655444333
No 49
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=71.12 E-value=7.5 Score=42.38 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCCCCc-cccchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccc
Q 006138 311 LNPPSFSD-LVFVSP-YLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFS 388 (659)
Q Consensus 311 ~p~~~~p~-~~~~~~-~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~s 388 (659)
-|+..+|. ++|..+ .-...+...+..+++.+.|+++.-.+.++..+.+.+.++++..-=.++=+++.+++.-++....
T Consensus 213 ~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t 292 (389)
T PF00860_consen 213 APWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTT 292 (389)
T ss_dssp S-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EE
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCc
Confidence 45556663 244433 4566777788889999999999999999999988887888988889999999999988776666
Q ss_pred hhhHhhhcCCCchhHHHHHHHHHHHHHHHhh
Q 006138 389 RSAVNFNAGCKTAVSNIVMSMAVMVTLLFLT 419 (659)
Q Consensus 389 rS~v~~~~G~~T~la~iv~a~~~ll~ll~l~ 419 (659)
-..-|...=+-|+.++-.++....+++..+.
T Consensus 293 ~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~ 323 (389)
T PF00860_consen 293 TYSENAGGIAATGVASRRVGLTAGVILILFG 323 (389)
T ss_dssp E-HHHHHHHHHHTB--HHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhccccceeeeHHHHHHHHHh
Confidence 5555555445667777777666555554333
No 50
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=71.03 E-value=23 Score=39.13 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=59.9
Q ss_pred cchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHH-HHHHHHHHHHHHHHhh-hhhhH
Q 006138 113 ILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAF-TATFFAGVFQASLGLL-RLGFI 190 (659)
Q Consensus 113 ~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~-~~~~l~Gi~~l~lg~~-rlg~l 190 (659)
.-|+.+-.+++++-++||+++....+-.....-+ + .++. .+...+|++++++|++ |++.+
T Consensus 283 ~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~-----T-------------~v~SR~v~~~a~~~lillgl~Pk~~al 344 (429)
T TIGR03616 283 GRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAV-----T-------------KVYSTLVFVAAAVFAILLGFSPKFGAL 344 (429)
T ss_pred ccchhhhhHHHHHHHhcCCCCCcceeeeeeeeee-----c-------------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998765544221111000 0 0111 2345578888888888 48999
Q ss_pred HhhccHhHHHHHHhHHHHHHHHHhhhh
Q 006138 191 VDFLSHAAIVGFMGGAATVVCLQQLKG 217 (659)
Q Consensus 191 ~~~ip~~vi~Gf~~gigi~i~~~ql~~ 217 (659)
+..+|.||++|.+...--.+..+.++.
T Consensus 345 ~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 345 IHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876666677666663
No 51
>PRK10444 UMP phosphatase; Provisional
Probab=69.26 E-value=11 Score=38.45 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=54.9
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 565 HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
+.+++|+.++-+-+-.-+.--.+..+.++++|++++++..+ .+..+.|++.|+. +.+++++.+...+.+++++
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 57899999988777655666667888899999999887543 3477888888983 3466788777777676665
No 52
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=68.48 E-value=9.6 Score=39.38 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=55.6
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
.+.+++|+.++-+-+..-+.-..+..++++++|++++++.. ..+..+.|++.|+... .++++.+...+.++++
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 57899999998877766665567888889999999988744 2345578888998533 4678888777777766
Q ss_pred h
Q 006138 639 F 639 (659)
Q Consensus 639 ~ 639 (659)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 5
No 53
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=68.16 E-value=67 Score=28.40 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=68.6
Q ss_pred CcEEEEEEcCc-eeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCC--ccchHHHHHHHHHHHHHHhcCCE
Q 006138 522 TGVLILKIDAP-IYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVG--NIDTSGISMLEEVKKTLDRRELK 598 (659)
Q Consensus 522 ~~i~Iirl~g~-L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~--~IDsSgl~~L~~l~~~~~~~gi~ 598 (659)
+++.|..+.+. .--.+.+...+-+...-+ .+...+++|-+.++ |.|-+. +.--++.+.+..++++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 45566666433 444565555554444322 25789999987765 556554 5667888999999999
Q ss_pred EEEEc------CCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 599 LVLAN------PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 599 l~l~~------~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
+.+++ .+...++....++=-+.+ ++++|.+||++++
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~L 113 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAWL 113 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhhC
Confidence 99983 355577777767665555 8899999999873
No 54
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.91 E-value=24 Score=32.35 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhc---CCEEEEEcCC-------HHHHHHHHhCCCccccCCcceecCHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR---ELKLVLANPG-------AEVTKKLDKSKFIENMGQEWIYLTVGE 632 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~---gi~l~l~~~~-------~~v~~~L~~~g~~~~~~~~~if~s~~~ 632 (659)
+++.|.+-+. ..+....+.++.+++++. ++.+.+-+.- ++.++.+++.|+...++.. .+.++
T Consensus 54 ~~d~V~lS~~-----~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~---~~~~~ 125 (137)
T PRK02261 54 DADAILVSSL-----YGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG---TDPEE 125 (137)
T ss_pred CCCEEEEcCc-----cccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC---CCHHH
Confidence 4667766443 334555667777777766 6666666642 4577899999986554332 27899
Q ss_pred HHHHHHhhccc
Q 006138 633 AVTACNFRLHT 643 (659)
Q Consensus 633 Av~~~~~~l~~ 643 (659)
.+++++..+.+
T Consensus 126 i~~~l~~~~~~ 136 (137)
T PRK02261 126 AIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHhcc
Confidence 99999887765
No 55
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=64.89 E-value=18 Score=37.40 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
...++|+||.+|--.-...+.--.+..+.+++.|.++.|+.. +++-.+++++.|+.. ++++.+|.+...+..++
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHH
Confidence 368999999999877777777777888999999999988743 245678899999965 77889999988888888
Q ss_pred Hhhc
Q 006138 638 NFRL 641 (659)
Q Consensus 638 ~~~l 641 (659)
++..
T Consensus 100 k~~~ 103 (306)
T KOG2882|consen 100 KKRK 103 (306)
T ss_pred HHhC
Confidence 7665
No 56
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=64.29 E-value=11 Score=38.41 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=53.8
Q ss_pred eEEEEEecCCCccchH----HHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHH
Q 006138 565 HYVILDMGAVGNIDTS----GISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENMGQEWIYLTVGEAVT 635 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsS----gl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~ 635 (659)
+.+++|+.++-+-+.. .+..-.+..++++++|++++++..+ .++.+.|+..|+. +.+++++.+...+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAARQ 79 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHHH
Confidence 6789999988765544 3444556667788899999887532 2578889999984 456788888877777
Q ss_pred HHHh
Q 006138 636 ACNF 639 (659)
Q Consensus 636 ~~~~ 639 (659)
++++
T Consensus 80 ~l~~ 83 (257)
T TIGR01458 80 LLEE 83 (257)
T ss_pred HHHh
Confidence 7765
No 57
>PLN02645 phosphoglycolate phosphatase
Probab=60.88 E-value=29 Score=36.46 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=52.1
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
.+.+++|+.++-+-+..-+..-.+..++++++|++++++..+ .++.+.|+..|+. ...+.++.+...+-...+
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l~ 105 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYLK 105 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHHH
Confidence 689999999988776655555578888899999999887542 3466778888974 234567766554444443
No 58
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=59.62 E-value=79 Score=32.38 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=78.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCch
Q 006138 322 VSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTA 401 (659)
Q Consensus 322 ~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~ 401 (659)
..+.+..++.++++..+.++...-+.++....+.+.+-+.--.=.+-=++.++||+-++...+-+..+-....++..-+-
T Consensus 146 ~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~ 225 (280)
T PF00916_consen 146 ILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGL 225 (280)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhH
Confidence 34567788888899899888888888887777777776666666777788899999888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 006138 402 VSNIVMSMAVMVTLLFLT 419 (659)
Q Consensus 402 la~iv~a~~~ll~ll~l~ 419 (659)
+++++..++++...-++.
T Consensus 226 ~~~~~~l~~l~~~~~~l~ 243 (280)
T PF00916_consen 226 ISALFVLLVLLFLAPLLA 243 (280)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998887776654444
No 59
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=57.09 E-value=21 Score=36.22 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=53.3
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 565 HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++.. ..++.+.|+..|+. ..++.++.+...+.+++.+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~--~~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP--ATLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEeeHHHHHHHHHHh
Confidence 5788898887665554444346777888899999998742 45678889999984 2456788887777777765
Q ss_pred h
Q 006138 640 R 640 (659)
Q Consensus 640 ~ 640 (659)
+
T Consensus 80 ~ 80 (249)
T TIGR01457 80 L 80 (249)
T ss_pred c
Confidence 3
No 60
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=56.94 E-value=27 Score=36.32 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCccchHHH----HHHHHHHHHHHhcCCEEEEEc--CCHHHHHHHHhCCCcccc
Q 006138 562 SSLHYVILDMGAVGNIDTSGI----SMLEEVKKTLDRRELKLVLAN--PGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl----~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~ 621 (659)
+..+.+++|+.+.-.=|..-+ ....+..++++++|+.+.++. .++.+.+.|+..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 467899999998666665433 577888899999999999985 667888999999998655
No 61
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.89 E-value=37 Score=30.87 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCC--EEEEEc--CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRREL--KLVLAN--PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi--~l~l~~--~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+...+.+ +..|.+-...+.++.+.++++|. -.++++ ..++-.+.|+..|+.+.++. -.++++-++++.
T Consensus 53 ~adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~---gt~~~~i~~~l~ 124 (132)
T TIGR00640 53 DVHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGP---GTPIPESAIFLL 124 (132)
T ss_pred CCCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECC---CCCHHHHHHHHH
Confidence 3556655 66778888889999999998854 234555 45556778999999888743 346666666665
Q ss_pred hhc
Q 006138 639 FRL 641 (659)
Q Consensus 639 ~~l 641 (659)
+.+
T Consensus 125 ~~~ 127 (132)
T TIGR00640 125 KKL 127 (132)
T ss_pred HHH
Confidence 543
No 62
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.35 E-value=58 Score=28.95 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=46.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhc---CCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR---ELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~---gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+.+.|.+-+ .|......+.++.+.++++ ++.+.+.+ ..++..+.++..|+.+.+ +-=.+.++.+..++
T Consensus 50 ~~d~V~iS~-----~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~---~~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSS-----LSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIF---GPGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEcc-----cchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHh
Confidence 466777643 3566777788888888887 44555554 345567889999988777 34456777777665
No 63
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=50.91 E-value=37 Score=34.95 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=62.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC----HH-HHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG----AE-VTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~----~~-v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
+.+.+++|+.+|-+-+...+.-=.+..+.++++|++++|...+ ++ +.++|+..+..+. .++.++.|-+.+.+.+
T Consensus 7 ~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l 85 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYL 85 (269)
T ss_pred hcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHH
Confidence 3578999999999999999999999999999999999887432 23 7777877454433 3568888888887777
Q ss_pred Hhhcc
Q 006138 638 NFRLH 642 (659)
Q Consensus 638 ~~~l~ 642 (659)
.++..
T Consensus 86 ~~~~~ 90 (269)
T COG0647 86 AKQKP 90 (269)
T ss_pred HhhCC
Confidence 77654
No 64
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=50.50 E-value=1.4e+02 Score=32.65 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCcccCCch-------HHHHHhhhhhhhhccCCcccccccchhh--Hh-hhcCC
Q 006138 329 AIKTGIITGVIAMAEGIAVGRSFAMFKNYHIDGNK-------EMIAFGMMNIAGSCTSCYLTTGPFSRSA--VN-FNAGC 398 (659)
Q Consensus 329 ~~~~~i~~~iv~~~~~~~~~~~~~~~~~~~~d~nq-------El~a~Gi~Ni~~s~fg~~p~~~s~srS~--v~-~~~G~ 398 (659)
.+..+++..++++..+.++.-.-++.-| .++.| -.++.|++++.=|..-=+|...+.|--. +- ...+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 4445666677777666555443333332 33333 5678889999988888899888777221 22 11221
Q ss_pred CchhH-----HHHHHHHHHHHHH--HhhhHhhhchHHHHHHHH
Q 006138 399 KTAVS-----NIVMSMAVMVTLL--FLTPLFHYTPLVVLSAII 434 (659)
Q Consensus 399 ~T~la-----~iv~a~~~ll~ll--~l~~l~~~iP~~vLa~il 434 (659)
-.++ .+++|+++++..+ .+..+.+.||.++.++++
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amL 142 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAML 142 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 2243 3444444444322 366788999999999988
No 65
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=50.46 E-value=3.3e+02 Score=28.68 Aligned_cols=60 Identities=28% Similarity=0.489 Sum_probs=38.0
Q ss_pred cccccC-----CCChh-hhHhhHHHHHHHHHHHhhhHHHHHHH-hC-CCcc--c------hhhhhhhhhhhhhhhc
Q 006138 71 IFEWAP-----RYSFQ-FLKADLIAGITIASLAIPQGISYAKL-AN-LPPI--L------GLYSSFVPPLVYAIMG 130 (659)
Q Consensus 71 ~~~wl~-----~Y~~~-~l~~Di~aGltv~~~~iPq~~aya~l-ag-lpp~--~------GL~s~~i~~liy~~fG 130 (659)
-.+|=| +|..- -+.+-++.-+..-++++|.|++.|.. +- .||. . ==.-+.+|+++|++||
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fg 138 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFG 138 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 446766 34433 25677777777778999999999873 33 5552 0 0122566777777766
No 66
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=50.44 E-value=36 Score=34.18 Aligned_cols=74 Identities=12% Similarity=-0.045 Sum_probs=51.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCH--H--HHHHHHhCCCcc-ccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGA--E--VTKKLDKSKFIE-NMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~--~--v~~~L~~~g~~~-~~~~~~if~s~~~Av~~~ 637 (659)
+.+.+++|+.++-.-...-..--.++.++++++|+++.++..++ . ..+.|+..|+.. .+ +.++.+-+.+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHH
Confidence 46899999998877666566677888899999999998863322 2 236889999864 43 35666665544444
Q ss_pred H
Q 006138 638 N 638 (659)
Q Consensus 638 ~ 638 (659)
+
T Consensus 85 ~ 85 (242)
T TIGR01459 85 L 85 (242)
T ss_pred H
Confidence 4
No 67
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.98 E-value=47 Score=30.35 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHHHHHHhcCC--EEEEEcCC-----HH---HHHHHHhCCCccccCCcceecCHHHHHHHHHhhcc
Q 006138 576 NIDTSGISMLEEVKKTLDRREL--KLVLANPG-----AE---VTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 576 ~IDsSgl~~L~~l~~~~~~~gi--~l~l~~~~-----~~---v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 642 (659)
.+-.+....+.++.+.++++|. ..++++-. ++ +++.|++.|+...|+... +.++.+++++..++
T Consensus 60 ~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 60 SLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred cccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 3336777778889999988864 34555542 22 456799999866554432 67888998888764
No 68
>PHA00736 hypothetical protein
Probab=47.93 E-value=92 Score=24.33 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=35.5
Q ss_pred hHHHHHHHhCCCccchhhh-hhhhhhhhhhhcCCCccccchhHHHHHHHH
Q 006138 100 QGISYAKLANLPPILGLYS-SFVPPLVYAIMGSSKDLAVGTVAVASLLIA 148 (659)
Q Consensus 100 q~~aya~laglpp~~GL~s-~~i~~liy~~fGss~~~~~Gp~a~~sl~~~ 148 (659)
.+++.|+-.|+.|+.+..- -..-++.|-.-|.-|.+.+|-.+..+++.-
T Consensus 3 daislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfm 52 (79)
T PHA00736 3 DAISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFM 52 (79)
T ss_pred hHHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHH
Confidence 3677888899999987543 334567787778888888887777776653
No 69
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=47.76 E-value=49 Score=35.64 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHhHHHHHHH
Q 006138 169 FTATFFAGVFQASLGLL---RLGFIVD-FLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 169 ~~~~~l~Gi~~l~lg~~---rlg~l~~-~ip~~vi~Gf~~gigi~i~ 211 (659)
...++...+..+++|.+ |+.++-+ .+|+||+.|++.++-....
T Consensus 7 ~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~ 53 (404)
T COG0786 7 ALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLL 53 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHH
Confidence 44566677777888876 4566655 7999999999988776655
No 70
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=47.50 E-value=65 Score=31.72 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=47.5
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcccc
Q 006138 562 SSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~ 621 (659)
.+++++.|| .....+|.-++.-++++.+.++++|+-+.++. .+|++.|..++-.-.+
T Consensus 156 ~~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITD--HNVREtL~i~dRaYIi 212 (243)
T COG1137 156 ANPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD--HNVRETLDICDRAYII 212 (243)
T ss_pred cCCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEcc--ccHHHHHhhhheEEEE
Confidence 357899999 67888999999999999999999999999984 4588888877754333
No 71
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=46.09 E-value=75 Score=31.29 Aligned_cols=66 Identities=5% Similarity=0.022 Sum_probs=42.5
Q ss_pred cEEEEEEcCceeEech-------HHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhc
Q 006138 523 GVLILKIDAPIYFANA-------SYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR 595 (659)
Q Consensus 523 ~i~Iirl~g~L~F~na-------~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~ 595 (659)
+|.|+.++|++.-.+. +.+.+.+++.. ..++++.|+|+... ..-|....+.+.+..+.+++.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~----------~d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~ 69 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDAR----------LDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAA 69 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHh----------hCCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhC
Confidence 4677888888765543 33444444422 23578999998654 667888777777776777766
Q ss_pred CCEE
Q 006138 596 ELKL 599 (659)
Q Consensus 596 gi~l 599 (659)
+..+
T Consensus 70 ~kpV 73 (211)
T cd07019 70 GKPV 73 (211)
T ss_pred CCCE
Confidence 5544
No 72
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=46.05 E-value=57 Score=36.47 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 562 SSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+++.|||| ..=+++|+.|-++|.+...+.|++|+.++++.-++.+....++.=+.+. |.-+.|-..+|-+++...
T Consensus 489 G~P~lvVLD-EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~-G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLD-EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD-GRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEec-CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC-ChHHhcCCHHHHHHHhcC
Confidence 467899999 5678999999999999999999999999999888887665554333222 344678888888877654
No 73
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=45.82 E-value=1.7e+02 Score=32.16 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=23.5
Q ss_pred HHHHhhhhhcccCcccCCch----HHHHHhhhhhhhhccC
Q 006138 344 GIAVGRSFAMFKNYHIDGNK----EMIAFGMMNIAGSCTS 379 (659)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~nq----El~a~Gi~Ni~~s~fg 379 (659)
+.+++|-+.....++.|+++ .|+..|+.|++-|++.
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~ 115 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence 45566665554455566655 7888888888866654
No 74
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=44.20 E-value=1e+02 Score=30.17 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=46.1
Q ss_pred EEEEEEcCcee---EechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 524 VLILKIDAPIY---FANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 524 i~Iirl~g~L~---F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
+.+++++|.+. -....++.+.+.+..+ .++++.|+++... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~----------d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARE----------DDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHh----------CCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 67899999998 5676777777766432 2468999998865 4567777777777777777655444
No 75
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.03 E-value=3.2e+02 Score=31.73 Aligned_cols=77 Identities=6% Similarity=0.058 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCC
Q 006138 538 ASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKF 617 (659)
Q Consensus 538 a~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~ 617 (659)
..++-+.+.+.++++ +.+++++|-.. +..+++++.|.+++.-+..+ .+.|+.+|+
T Consensus 408 ~Gr~G~~va~~L~~~----------g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi 462 (601)
T PRK03659 408 FGRFGQVIGRLLMAN----------KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGA 462 (601)
T ss_pred CchHHHHHHHHHHhC----------CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCC
Confidence 344555566555443 46899999553 23455666788887776653 457888887
Q ss_pred ccccCCcceecCHHHHHHHHHh
Q 006138 618 IENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 618 ~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+------..++.++.+..++.
T Consensus 463 ~~A~~vv~~~~d~~~n~~i~~~ 484 (601)
T PRK03659 463 EKAEAIVITCNEPEDTMKIVEL 484 (601)
T ss_pred ccCCEEEEEeCCHHHHHHHHHH
Confidence 6531101234555555554443
No 76
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=40.77 E-value=1e+02 Score=30.18 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=40.6
Q ss_pred EEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHH
Q 006138 524 VLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLD 593 (659)
Q Consensus 524 i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~ 593 (659)
|.+++++|.+. .+.+++.+.+.+..+ .++++.|+|+... ..-|....+-+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~----------d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKD----------DKSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhh----------CCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 676777777766432 2468899998864 3346666666666666665
No 77
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=40.48 E-value=5.6e+02 Score=29.31 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=35.2
Q ss_pred echHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhC
Q 006138 536 ANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKS 615 (659)
Q Consensus 536 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~ 615 (659)
.-..++-+.+.+.++++ +.+.+++|-.. +..+++++.|.+.+.-+..+ .+.|+++
T Consensus 423 ~G~G~~G~~la~~L~~~----------g~~vvvId~d~-------------~~~~~~~~~g~~~i~GD~~~--~~~L~~a 477 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA----------GIPLVVIETSR-------------TRVDELRERGIRAVLGNAAN--EEIMQLA 477 (558)
T ss_pred ECCChHHHHHHHHHHHC----------CCCEEEEECCH-------------HHHHHHHHCCCeEEEcCCCC--HHHHHhc
Confidence 33445555555555443 35788888542 23455556788877776654 5567777
Q ss_pred CCcc
Q 006138 616 KFIE 619 (659)
Q Consensus 616 g~~~ 619 (659)
|+.+
T Consensus 478 ~i~~ 481 (558)
T PRK10669 478 HLDC 481 (558)
T ss_pred Cccc
Confidence 7743
No 78
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=40.42 E-value=1.4e+02 Score=28.53 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=49.1
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcc---cc-CCcceecCHHHHHHHHH
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIE---NM-GQEWIYLTVGEAVTACN 638 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~---~~-~~~~if~s~~~Av~~~~ 638 (659)
...+|+|.++++- .-+.++++++++.|.++..+..+- .++.++.+|+.+ .+ |+.-+.-+-+|.++.++
T Consensus 23 ~~~~i~dy~Gl~~------~ql~~lR~~lr~~g~~lkV~KNtL-~~rAl~~~~~e~l~~~l~Gp~ai~fs~~dp~~~~K 94 (175)
T COG0244 23 PSVVIVDYRGLTV------AQLTELRKKLREAGAKLKVVKNTL-LRRALEEAGLEGLDDLLKGPTAIAFSNEDPVAAAK 94 (175)
T ss_pred CEEEEEEeCCCcH------HHHHHHHHHHHhCCcEEEEEhhHH-HHHHHHhcchhhHHHhccCCeEEEEecCCHHHHHH
Confidence 5789999998874 667889999999999999886654 888899988763 33 44444444345555444
No 79
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=38.62 E-value=4.6e+02 Score=26.98 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=22.2
Q ss_pred HhhhhhhHHhhccHhHHHHHHhHHHHHHH
Q 006138 183 GLLRLGFIVDFLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 183 g~~rlg~l~~~ip~~vi~Gf~~gigi~i~ 211 (659)
|---...+++.+|+.++.|+..+.|+.=.
T Consensus 162 G~~~v~~il~~iP~~v~~Gl~vaggmLPA 190 (265)
T TIGR00822 162 SQSAVQAMLKAIPEVVTHGLQIAGGIIVV 190 (265)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhHHH
Confidence 33346788999999999998887776543
No 80
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=38.34 E-value=67 Score=29.86 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=39.2
Q ss_pred EEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHH
Q 006138 526 ILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLD 593 (659)
Q Consensus 526 Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~ 593 (659)
+++++|+++-...+++.+.+.++-+ .++.+.|+++...-. -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~----------d~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEA----------DNSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHh----------CCCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 5789999999888888888877432 235788999876433 36555555555555554
No 81
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=37.42 E-value=80 Score=32.96 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCceEEEEEecCCCccchHHH----HHHHHHHHHHHhcCCEEEEEc--CCHHHHHHHHhCCCcccc
Q 006138 562 SSLHYVILDMGAVGNIDTSGI----SMLEEVKKTLDRRELKLVLAN--PGAEVTKKLDKSKFIENM 621 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl----~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~ 621 (659)
+..+.+++|+.+.-.-|-.-+ ....+..++++++|+.+.++. .++.+.+.|+..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 456899999987544443322 445677788899999999884 568899999999997654
No 82
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=37.24 E-value=1.2e+02 Score=29.84 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHh
Q 006138 562 SSLHYVILDMGAVGNIDTSGISMLEEVKKTLDR 594 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~ 594 (659)
++++.|+||.... .-|..+.+.+.+..+++++
T Consensus 41 ~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~ 72 (214)
T cd07022 41 PDVRAIVLDIDSP-GGEVAGVFELADAIRAARA 72 (214)
T ss_pred CCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc
Confidence 5789999998664 3467777777777777764
No 83
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=36.96 E-value=1e+02 Score=27.70 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 588 VKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 588 l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
+.+.+.++|+.++++. ..+.-...|+..|+.-..++. .+++||++....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 5677888999999985 688899999999995554433 889999998765
No 84
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=36.95 E-value=96 Score=30.51 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=36.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEE-EcCC-H-HHHHHHHhCCCccccCC
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVL-ANPG-A-EVTKKLDKSKFIENMGQ 623 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l-~~~~-~-~v~~~L~~~g~~~~~~~ 623 (659)
++..+++|+..+..=|..|++.+.++.+... +.++++ +... + .+.+.+.+.|....+.+
T Consensus 37 ~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K 98 (207)
T PRK11475 37 SFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSK 98 (207)
T ss_pred CCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEec
Confidence 3578888887776556679988888876543 455444 4322 2 24455656777666644
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=35.91 E-value=84 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006138 562 SSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG 605 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~ 605 (659)
.+++.++|| ...+.+|..+-..+.++.+++++.|+.+.++.-.
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999 7899999999999999999999999999888554
No 86
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=35.45 E-value=3.2e+02 Score=27.43 Aligned_cols=89 Identities=17% Similarity=0.326 Sum_probs=50.3
Q ss_pred HhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006138 107 LANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLR 186 (659)
Q Consensus 107 laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~r 186 (659)
++|=||.|||+.+.-+.+-|+++.. .+-..++++.+++.+..+. +.+...+-..|=+-- ...|+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~~-----~~~~~i~ai~~Ga~vAa~v----------~g~ya~taylGR~~s-~~~F~ 114 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMSA-----FGLNPILAIAIGAAVAALV----------HGVYATTAYLGRIAS-QKRFG 114 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHH-----cCccHHHHHHHHHHHHHHH----------HHHHHHHHHhhhHhh-HhhcC
Confidence 4678888888888888888887721 2233566666666665542 333333333332211 11111
Q ss_pred ----hhhHHhhccHhHHHHHHhHHHHHHH
Q 006138 187 ----LGFIVDFLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 187 ----lg~l~~~ip~~vi~Gf~~gigi~i~ 211 (659)
+.-+..-+|.-+-.+|++.-++..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~F~i~~~ 143 (269)
T PF04206_consen 115 QPVYLDVLRSHTPPIMAHAFIATFCIVTI 143 (269)
T ss_pred CCeehHHHhhhchhHHHHHHHHHHHHHHH
Confidence 2344556677777777776665543
No 87
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=32.92 E-value=2.8e+02 Score=28.03 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=18.9
Q ss_pred hhhHHhhccHhHHHHHHhHHHHH
Q 006138 187 LGFIVDFLSHAAIVGFMGGAATV 209 (659)
Q Consensus 187 lg~l~~~ip~~vi~Gf~~gigi~ 209 (659)
...+.+.+|+-+..|+..+.|+.
T Consensus 167 v~~~~~~iP~~v~~gl~vagg~L 189 (238)
T PF03609_consen 167 VQALLNAIPEWVLNGLNVAGGML 189 (238)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 57889999999999988776665
No 88
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=32.75 E-value=5.3e+02 Score=26.56 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=79.9
Q ss_pred CCCCh--hhhHhhHHHHHHHHHHHhhhHHHHHHHh---CCCccch---hhhhhhhhhhhhhhcCCCccccchhHHHHHHH
Q 006138 76 PRYSF--QFLKADLIAGITIASLAIPQGISYAKLA---NLPPILG---LYSSFVPPLVYAIMGSSKDLAVGTVAVASLLI 147 (659)
Q Consensus 76 ~~Y~~--~~l~~Di~aGltv~~~~iPq~~aya~la---glpp~~G---L~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~ 147 (659)
|.++. +.+.--+++|+.=++-++=|-.||..+. .+|-..| .-++.++.+++.=+.+..+..+|-.|+..+++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 44444 6788889999999999999988887652 4565555 33666777777777788899999999999999
Q ss_pred HHHHhhhccCCCCh----hhH---HHHHHHHHHHHHHHHHHHHhhhhhhHHhhccHhH
Q 006138 148 ASFLGQEVNYNENP----KLY---LHLAFTATFFAGVFQASLGLLRLGFIVDFLSHAA 198 (659)
Q Consensus 148 ~~~v~~~~~~~~~~----~~~---~~~~~~~~~l~Gi~~l~lg~~rlg~l~~~ip~~v 198 (659)
+.......++.++. ... +..+...++.-.++..+--.++..-+.-++|+++
T Consensus 116 Gv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqai 173 (269)
T PF06800_consen 116 GVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAI 173 (269)
T ss_pred HHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 98887765443321 111 1222223333333444444445555666777644
No 89
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=32.45 E-value=81 Score=34.50 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHhHHHHHHH
Q 006138 172 TFFAGVFQASLGLL---RLGFIVD-FLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 172 ~~l~Gi~~l~lg~~---rlg~l~~-~ip~~vi~Gf~~gigi~i~ 211 (659)
|+....+.+++|.+ |+.++.| ++|.||++|++.++.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 33444455556644 4566755 8999999999998776665
No 90
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=32.05 E-value=6.9e+02 Score=27.09 Aligned_cols=82 Identities=22% Similarity=0.213 Sum_probs=52.7
Q ss_pred chhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhh--hhhHH
Q 006138 114 LGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLR--LGFIV 191 (659)
Q Consensus 114 ~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~r--lg~l~ 191 (659)
--+..+.+.+++.+.||+..... +-+++.++.+. +.+.||+.++ ...+.+|++.+++|++. +-.+.
T Consensus 242 ~~~~~tGl~s~l~ApfGg~~~nl-------AaitaAIc~g~-eah~dp~rRy----~Aav~~Gv~yll~Gl~a~~~v~l~ 309 (378)
T PF03594_consen 242 PLITVTGLASLLAAPFGGHAVNL-------AAITAAICAGP-EAHPDPSRRY----IAAVAAGVFYLLFGLFAAALVALF 309 (378)
T ss_pred HHHHHHHHHHHHHhhhchhhhHH-------HHHHHHHHcCC-ccCCCcccch----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34566788899999999764333 33444445432 1233554432 45678899999999996 34567
Q ss_pred hhccHhHHHHHHhHHHH
Q 006138 192 DFLSHAAIVGFMGGAAT 208 (659)
Q Consensus 192 ~~ip~~vi~Gf~~gigi 208 (659)
.-+|.+++.. ++|.++
T Consensus 310 ~~lP~~li~~-lAGLAL 325 (378)
T PF03594_consen 310 AALPPALIAA-LAGLAL 325 (378)
T ss_pred HhCCHHHHHH-HHHHHH
Confidence 8889887765 444444
No 91
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=30.40 E-value=91 Score=32.88 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=40.5
Q ss_pred CceEEEEEecCC-----------CccchHH-HHHHHHHHHHHHhcCCEEEEEcCC--HHHHHHHHh----CCCcccc
Q 006138 563 SLHYVILDMGAV-----------GNIDTSG-ISMLEEVKKTLDRRELKLVLANPG--AEVTKKLDK----SKFIENM 621 (659)
Q Consensus 563 ~~~~vIlD~s~V-----------~~IDsSg-l~~L~~l~~~~~~~gi~l~l~~~~--~~v~~~L~~----~g~~~~~ 621 (659)
..|.+|+||... ..|.... -..+.++.++++++|+.+.++.-+ ..+.+.|+. .++.+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f 78 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDF 78 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHe
Confidence 468999999752 2222221 346788889999999999998543 467788887 6665443
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=29.91 E-value=1.9e+02 Score=28.70 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=45.5
Q ss_pred eeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHH--HHHHHHHHHHHHhcCCEEEEEc
Q 006138 533 IYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSG--ISMLEEVKKTLDRRELKLVLAN 603 (659)
Q Consensus 533 L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSg--l~~L~~l~~~~~~~gi~l~l~~ 603 (659)
..|.++++|.+.+.+.+.+.+...-.........+++| .+..+.... .+.|-++.+.+.++|.+++++.
T Consensus 67 v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iD--Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 67 VVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIID--DIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEE--TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEe--cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 33566777776666655432100000011246789999 777776654 6899999999999999999986
No 93
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=29.81 E-value=3.4e+02 Score=30.18 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=49.3
Q ss_pred EcCceeEe---chHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhc-CCEEEEEcC
Q 006138 529 IDAPIYFA---NASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR-ELKLVLANP 604 (659)
Q Consensus 529 l~g~L~F~---na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~-gi~l~l~~~ 604 (659)
...|+|.. +.+.+++.++...++ +++..|++-+..-..-|. ......+.+..++. +..++.+..
T Consensus 343 ~~NPlDl~~~~~~~~~~~al~~l~~d----------p~vd~Vlv~~~~~~~~~~--~~~a~~l~~~~~~~~~KPvv~~~~ 410 (447)
T TIGR02717 343 IKNPVDVLGDATPERYAKALKTVAED----------ENVDGVVVVLTPTAMTDP--EEVAKGIIEGAKKSNEKPVVAGFM 410 (447)
T ss_pred cCCCEecCCCCCHHHHHHHHHHHHcC----------CCCCEEEEEccCCccCCH--HHHHHHHHHHHHhcCCCcEEEEec
Confidence 34566652 334555555443332 345566544432122222 12223333333333 555544432
Q ss_pred C----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhc
Q 006138 605 G----AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRL 641 (659)
Q Consensus 605 ~----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l 641 (659)
. ++.++.|+..|+ .+|.+.++|++.+....
T Consensus 411 gg~~~~~~~~~L~~~Gi-------p~f~~p~~A~~al~~~~ 444 (447)
T TIGR02717 411 GGKSVDPAKRILEENGI-------PNYTFPERAVKALSALY 444 (447)
T ss_pred CCccHHHHHHHHHhCCC-------CccCCHHHHHHHHHHHH
Confidence 2 346777887776 68999999999877543
No 94
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=29.67 E-value=99 Score=29.68 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=34.2
Q ss_pred EEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHH
Q 006138 524 VLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSG 581 (659)
Q Consensus 524 i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSg 581 (659)
+.+++++|.++....+++++.+.+..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~-----------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE-----------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC-----------CCCeEEEEEECcCCCHHHH
Confidence 4689999999998888888877764332 3678998887666554444
No 95
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=29.61 E-value=1.7e+02 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHhc
Q 006138 279 APLTSVILGSLLVYLSH 295 (659)
Q Consensus 279 ~~Li~vi~~t~i~~~~~ 295 (659)
+.-|++++|-+++|+.+
T Consensus 41 GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 41 GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 77899999999999865
No 96
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=29.23 E-value=6e+02 Score=26.60 Aligned_cols=28 Identities=11% Similarity=0.393 Sum_probs=22.6
Q ss_pred EEEEEcCceeEechHHHHHHHHHHHHHH
Q 006138 525 LILKIDAPIYFANASYLRERIARWVEEE 552 (659)
Q Consensus 525 ~Iirl~g~L~F~na~~~~~~l~~~i~~~ 552 (659)
..+.+++.+...++..+.+++.+.+++.
T Consensus 249 ~~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 249 VHIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 4456788888999999999999887765
No 97
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=28.38 E-value=3.5e+02 Score=27.88 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=20.7
Q ss_pred HhhhhhhHHhhccHhHHHHHHhHHHHHH
Q 006138 183 GLLRLGFIVDFLSHAAIVGFMGGAATVV 210 (659)
Q Consensus 183 g~~rlg~l~~~ip~~vi~Gf~~gigi~i 210 (659)
|---...+++.+|.-++.|+..+-|+.=
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmLP 190 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGILP 190 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3334678899999999998877766553
No 98
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.29 E-value=2.8e+02 Score=23.06 Aligned_cols=54 Identities=11% Similarity=0.300 Sum_probs=37.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCcccc
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENM 621 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~ 621 (659)
++..+++|.. .-|-+|.+.+..+.+.. .+..+++... .........+.|..+.+
T Consensus 43 ~~d~iiid~~---~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 43 PPDLIIIDLE---LPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp TESEEEEESS---SSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred CceEEEEEee---ecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 4789999954 33467888888886555 5667766553 44566666688887776
No 99
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.17 E-value=5.2e+02 Score=26.17 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=50.1
Q ss_pred HhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006138 107 LANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLR 186 (659)
Q Consensus 107 laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~r 186 (659)
++|=||.|||+.+.-+.+-|+++.. .+--+++++.+++.+..+. +.+...+-..|=+-- ...|+
T Consensus 51 iSGEP~aygl~~~i~g~vA~~l~~~-----~~~~~ilAi~~Ga~vaa~v----------~~~ya~tay~GR~as-q~~F~ 114 (283)
T TIGR01113 51 ISGEPVSYGLYCGIAGAVAYVLMSY-----FGLPPLIALAVGAVIAALV----------HLAYATTAYLGRIAS-SATFN 114 (283)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh-HHhcC
Confidence 3677888888888888888877621 1334566666666665542 333333333332210 11111
Q ss_pred ----hhhHHhhccHhHHHHHHhHHHHHHH
Q 006138 187 ----LGFIVDFLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 187 ----lg~l~~~ip~~vi~Gf~~gigi~i~ 211 (659)
+.-+...+|+.+-.||++-.++..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~fci~~~ 143 (283)
T TIGR01113 115 QPVYLDMLTSHLGPIAGHGFIVTFCMVGV 143 (283)
T ss_pred CcchHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3445566777777788776665543
No 100
>PRK10692 hypothetical protein; Provisional
Probab=27.91 E-value=1.4e+02 Score=24.91 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=29.5
Q ss_pred hhhHhhHHHHHHHHHHHhhhHHHHHHHhCCCcc--------chhhhhhhhhhhhh
Q 006138 81 QFLKADLIAGITIASLAIPQGISYAKLANLPPI--------LGLYSSFVPPLVYA 127 (659)
Q Consensus 81 ~~l~~Di~aGltv~~~~iPq~~aya~laglpp~--------~GL~s~~i~~liy~ 127 (659)
..+.++++-|+-. +.+--+++|.+++.+|.- ..|++-|++.++..
T Consensus 6 a~~~GN~lMglGm--v~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllWL 58 (92)
T PRK10692 6 ASLLGNVLMGLGL--VVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLWL 58 (92)
T ss_pred hHHHhhHHHHHHH--HHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHHH
Confidence 3578888887644 444568889998866642 34666666666554
No 101
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.75 E-value=1.3e+02 Score=27.24 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=37.4
Q ss_pred CccchHHHHHHHHHHHHHHhcCC-EE-EEEcCC--------HHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 575 GNIDTSGISMLEEVKKTLDRREL-KL-VLANPG--------AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 575 ~~IDsSgl~~L~~l~~~~~~~gi-~l-~l~~~~--------~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+.+-++....+.++.+.++++|. .+ ++++.. ++.++.|+..|+...+++.. +.++.++.++
T Consensus 57 S~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l~ 127 (128)
T cd02072 57 SSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADLK 127 (128)
T ss_pred eccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHh
Confidence 44455666777778888877764 22 344433 33567899999976665432 5666665543
No 102
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.73 E-value=2.3e+02 Score=25.43 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 578 DTSGISMLEEVKKTLDRR--ELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 578 DsSgl~~L~~l~~~~~~~--gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
|..+.+.+..+.++++++ +..+..+-.+..++++|+..|+ -.++++||++.+.+
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~--------~~p~~~eaL~~l~~ 67 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGI--------EVDTPEEALAKLAA 67 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCC--------CCCCHHHHHHHHHH
Confidence 347778888888888765 4567777667777888876653 35677777776655
No 103
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.54 E-value=7e+02 Score=27.69 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHHhccCccceehhhhhhhhhhhhchhhhHHHHH
Q 006138 402 VSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGLVIAI 481 (659)
Q Consensus 402 la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl~~Gv 481 (659)
-++.+.++.+.+.+++.+-+=...|+-.+..+.-.....+. .. .-...-.. .-.++.-.++..+.+|+++++
T Consensus 135 ~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~-----~t--~g~~~p~~-~~~~l~~~ll~P~~ig~ai~~ 206 (459)
T PF10337_consen 135 RASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIF-----LT--YGPLFPTF-FAYTLGKTLLKPFLIGIAIAL 206 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-----HH--hCcCcCcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777666667678887555444333222211 00 00011111 233445556667778888888
Q ss_pred HHHHHHH
Q 006138 482 SISVLRV 488 (659)
Q Consensus 482 ~~sl~~~ 488 (659)
+.+++.+
T Consensus 207 ~vslliF 213 (459)
T PF10337_consen 207 VVSLLIF 213 (459)
T ss_pred HHheeec
Confidence 8887654
No 104
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.51 E-value=1.1e+02 Score=27.23 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=44.3
Q ss_pred eEEEEEecCCCc-----cchH----HHHHHHHHHHHHHhcCCEEEEEcCCH----------HHHHHHHhCCCccccC--C
Q 006138 565 HYVILDMGAVGN-----IDTS----GISMLEEVKKTLDRRELKLVLANPGA----------EVTKKLDKSKFIENMG--Q 623 (659)
Q Consensus 565 ~~vIlD~s~V~~-----IDsS----gl~~L~~l~~~~~~~gi~l~l~~~~~----------~v~~~L~~~g~~~~~~--~ 623 (659)
|.+++|+.++-- .+.. -..-..++.+.++++|+++.++..++ .+.+.+++.|+..... .
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 80 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYAC 80 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 356777766443 2222 22345667788889999999986644 4777888888742210 0
Q ss_pred cceecCHHHHHHHHHhhc
Q 006138 624 EWIYLTVGEAVTACNFRL 641 (659)
Q Consensus 624 ~~if~s~~~Av~~~~~~l 641 (659)
.....--.++++.+.+++
T Consensus 81 ~~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 81 PHCRKPKPGMFLEALKRF 98 (132)
T ss_pred CCCCCCChHHHHHHHHHc
Confidence 001112245666666665
No 105
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=27.23 E-value=2.1e+02 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=32.1
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEE
Q 006138 565 HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVL 601 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l 601 (659)
..||.|.+.+..-|-+-.+.++++.+..++.|+.+..
T Consensus 65 NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 65 NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 6899999999998888889999999999988876543
No 106
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=27.11 E-value=1.9e+02 Score=29.13 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=50.6
Q ss_pred EcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHH-----H--------------------
Q 006138 529 IDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGI-----S-------------------- 583 (659)
Q Consensus 529 l~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl-----~-------------------- 583 (659)
-+.++.+-+.+++++.+.. .++-.|++|+.+. -+|++.. +
T Consensus 42 ~~~~~~~~~~~~~~~~~~~--------------~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~ 106 (237)
T TIGR01672 42 EQAPIHWISVAQIENSLEG--------------RPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVN 106 (237)
T ss_pred ccCCeeEEEHHHHHHhcCC--------------CCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHHH
Confidence 3456778887777766543 1344899998764 5666551 0
Q ss_pred -----------HHHHHHHHHHhcCCEEEEEcCC------HHHHHHHHhCCCccc
Q 006138 584 -----------MLEEVKKTLDRRELKLVLANPG------AEVTKKLDKSKFIEN 620 (659)
Q Consensus 584 -----------~L~~l~~~~~~~gi~l~l~~~~------~~v~~~L~~~g~~~~ 620 (659)
...++.+.++++|+++.++..+ ..+...++..|+.+.
T Consensus 107 ~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 107 NGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 0566778888999999997554 235556666788654
No 107
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=26.63 E-value=1.2e+02 Score=30.48 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=46.4
Q ss_pred EEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHHHh-CCCccccCCcceecCHHHHHHHHHhh
Q 006138 567 VILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN-----PGAEVTKKLDK-SKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 567 vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~-~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
+++|+.++-.-+..-+.-=.+..+.++++|.++.+.. ...+..+.|+. .|+. +..+.++.+...+.++++++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~~ 78 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQR 78 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHHh
Confidence 3677777665544433333566677788899998873 23356677777 5662 34567888877777777653
No 108
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=26.26 E-value=1.9e+02 Score=25.58 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=38.3
Q ss_pred cCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhcccCCC
Q 006138 595 RELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLHTCEP 646 (659)
Q Consensus 595 ~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~~ 646 (659)
+|+++++++ ..+...+.|+..|+.-... .--.+++||++..+..++.+.+
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~--~~~~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKV--NEPESISELLERLQKMLKGNPP 112 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEec--CCCccHHHHHHHHHHHHcCCCC
Confidence 699999985 5888899999999844321 1225799999999999877653
No 109
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=26.17 E-value=2.2e+02 Score=33.14 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=57.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHHHHhCCCccccCCcceecCHHHHHHHHHhh
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG--AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~--~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
+++.+++| ...+.+|+.....+.+..+++.++|.+++++.-+ .++.+.+++.-+.+. |+...+.+.+|+.++.++.
T Consensus 184 ~p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~~ 261 (617)
T TIGR00955 184 DPPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSDL 261 (617)
T ss_pred CCCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHHc
Confidence 46789999 6799999999999999999998888888777544 457777777665542 4445567778887777664
No 110
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=26.16 E-value=59 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=27.6
Q ss_pred eEEEEEecCCCcc-chHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Q 006138 565 HYVILDMGAVGNI-DTSGISMLEEVKKTLDRRELKLVLANPGAEVTK 610 (659)
Q Consensus 565 ~~vIlD~s~V~~I-DsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~ 610 (659)
..||+| ....+ + -+.+..+...+++.++++++++.. +.++
T Consensus 89 ~~lviD--e~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~-~l~~ 129 (131)
T PF13401_consen 89 VLLVID--EADHLFS---DEFLEFLRSLLNESNIKVVLVGTP-ELEK 129 (131)
T ss_dssp EEEEEE--TTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS-TTTT
T ss_pred eEEEEe--ChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh-hhHh
Confidence 678888 77777 5 455555555555789999999876 3443
No 111
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=26.13 E-value=6e+02 Score=25.83 Aligned_cols=88 Identities=17% Similarity=0.284 Sum_probs=49.1
Q ss_pred HhCCCccchhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006138 107 LANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLR 186 (659)
Q Consensus 107 laglpp~~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~r 186 (659)
++|=||.|||+.+.-+++-|+++. .+-..++++.+++.+..+. +.+.+.+-..|=+- -...|+
T Consensus 58 iSGEP~aygl~~ai~g~vA~~lm~------~~~~~vlAi~~Ga~vaa~v----------hg~ya~taylGR~a-sq~~F~ 120 (292)
T PRK00972 58 ISGEPVAYGLWCAIAGAVAWALMA------FGLNPVLAIIVGAGVAALV----------HGVYATTAYLGRIA-SQSKFG 120 (292)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHH------cCccHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHH-HHHhcC
Confidence 367788888888888888887762 2234455666666665442 33333333333221 001111
Q ss_pred ----hhhHHhhccHhHHHHHHhHHHHHHH
Q 006138 187 ----LGFIVDFLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 187 ----lg~l~~~ip~~vi~Gf~~gigi~i~ 211 (659)
+.-+...+|..+-.+|++--++..+
T Consensus 121 QPvylDvl~sh~~~i~~haFIa~Fci~~~ 149 (292)
T PRK00972 121 QPVYLDVLRSHTGPIMGHAFIATFCIVTL 149 (292)
T ss_pred CceeHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3344566777777777776665543
No 112
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=25.71 E-value=4.6e+02 Score=30.75 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=10.7
Q ss_pred hhchHHHHHHHHHHHHhh
Q 006138 423 HYTPLVVLSAIIMAAMLG 440 (659)
Q Consensus 423 ~~iP~~vLa~ili~~~~~ 440 (659)
+.-|..++-||+-...+.
T Consensus 369 sl~p~fi~iGi~sttlfs 386 (945)
T KOG1288|consen 369 SLHPPFILIGILSTTLFS 386 (945)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 455777777666554443
No 113
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.51 E-value=4.5e+02 Score=22.80 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhc---CCEEEEEcCCHHH-HHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRR---ELKLVLANPGAEV-TKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~---gi~l~l~~~~~~v-~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+++.|.+-++ +......+.++.++++++ ++.+++.+..... .+.++..|++ .++.+-.+|++.+.
T Consensus 50 ~pdvV~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D------~~~~~~~~~~~~~~ 118 (119)
T cd02067 50 DADAIGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD------AYFGPATEAVEVLK 118 (119)
T ss_pred CCCEEEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe------EEECCHHHHHHHHh
Confidence 4677777554 333445666666777666 4667777654332 3467777763 46777778887764
No 114
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=25.13 E-value=8.5e+02 Score=25.89 Aligned_cols=52 Identities=15% Similarity=-0.021 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhh------hhhH-HhhccHhHHHHHHhHHHHHHHHHhhhhhhCc
Q 006138 170 TATFFAGVFQASLGLLR------LGFI-VDFLSHAAIVGFMGGAATVVCLQQLKGILGL 221 (659)
Q Consensus 170 ~~~~l~Gi~~l~lg~~r------lg~l-~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~ 221 (659)
..+++.-++|-..+... +... .+..|+.+..-+...+.+..+..+...+.|.
T Consensus 21 l~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~ 79 (358)
T PF01566_consen 21 LSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGI 79 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555442 2222 4566666666666666666666666555554
No 115
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.09 E-value=8.9e+02 Score=28.21 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=28.1
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcc
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIE 619 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~ 619 (659)
+.+++++|.+. +-.+++++.|.+++.-+..+ .+.|+.+|+.+
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~ 464 (621)
T PRK03562 423 GVKMTVLDHDP-------------DHIETLRKFGMKVFYGDATR--MDLLESAGAAK 464 (621)
T ss_pred CCCEEEEECCH-------------HHHHHHHhcCCeEEEEeCCC--HHHHHhcCCCc
Confidence 46789999764 33455566788887776644 45677788754
No 116
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.01 E-value=1.2e+02 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHH
Q 006138 251 LGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVY 292 (659)
Q Consensus 251 ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~ 292 (659)
+.+.+++.+++.+++.++++...+...+..++++++|..-+|
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334445555667788888875433332334444444444433
No 117
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=24.86 E-value=1.3e+02 Score=25.39 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=37.8
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCc
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFI 618 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~ 618 (659)
...+++|+++++. .-+.++++++++.|+++.+... .-.++.++.++..
T Consensus 21 ~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~KN-~l~~~Al~~~~~~ 68 (100)
T PF00466_consen 21 KYVIVVDYNGLSA------NQLQELRKELRKKGGKFKVVKN-TLMKKALKNTGFE 68 (100)
T ss_dssp SEEEEEECTTSCH------HHHHHHHHHHHHHTEEEEECSH-HHHHHHHHHHHTS
T ss_pred CEEEEEEeCCCCH------HHHHHHHHHHHhcCcEEEEecH-HHHHHHHhcCccc
Confidence 4788999988775 5677899999999999988754 3477888888765
No 118
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.38 E-value=1.8e+02 Score=27.61 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=45.8
Q ss_pred CceEEEEEecC--CCccchHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHHHHhCCCccc
Q 006138 563 SLHYVILDMGA--VGNIDTSGISMLEEVKKTLDRRELKLVLANPGA--EVTKKLDKSKFIEN 620 (659)
Q Consensus 563 ~~~~vIlD~s~--V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~--~v~~~L~~~g~~~~ 620 (659)
.++.+++|+.. |..=+..+..-+.+...++++.|+++++++.+. .|....++.|+.-.
T Consensus 27 Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 27 GIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFI 88 (175)
T ss_pred CCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCcee
Confidence 68999999976 666677778899999999999999999887654 35566777776433
No 119
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.78 E-value=1.7e+02 Score=24.22 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=28.6
Q ss_pred hhHhhHHHHHHHHHHHhhhHHHHHHHhCCCcc--------chhhhhhhhhhhhh
Q 006138 82 FLKADLIAGITIASLAIPQGISYAKLANLPPI--------LGLYSSFVPPLVYA 127 (659)
Q Consensus 82 ~l~~Di~aGltv~~~~iPq~~aya~laglpp~--------~GL~s~~i~~liy~ 127 (659)
.+.++++-|+ |++.+--+++|++++.+|.- ..+++-|++.++..
T Consensus 7 ~~~GN~lMgl--Gmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllWL 58 (89)
T PF10762_consen 7 FLLGNVLMGL--GMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLWL 58 (89)
T ss_pred HHHhhHHHHH--hHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHHH
Confidence 4778888875 44445568899998766532 34666666666554
No 120
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.67 E-value=2.6e+02 Score=26.70 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=38.6
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEV 608 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v 608 (659)
+++.+++| .....+|....+.+.+..++++++|..++++.-+.+.
T Consensus 107 ~p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 107 PGTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 37889998 6799999999999999999998889999888776654
No 121
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=23.15 E-value=5.5e+02 Score=27.76 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=38.7
Q ss_pred CCceEEEEEec-CCCccchHHHHHHHHHHHHHHhcCCEEEEE--cC-CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 562 SSLHYVILDMG-AVGNIDTSGISMLEEVKKTLDRRELKLVLA--NP-GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 562 ~~~~~vIlD~s-~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~--~~-~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
++++.|++.+. +.+..|..+ +.+.+..++.. .+..++.+ +. .++.++.|+.+|+ . + .+|.+.++|++.+
T Consensus 309 p~vd~ilv~i~gg~~~~~~va-~~i~~a~~~~~-~~kPvvv~~~g~~~~~~~~~L~~~G~-~-i---p~~~~~~~Av~~~ 381 (386)
T TIGR01016 309 KSVKVVFINIFGGITRCDLVA-KGLVEALKEVG-VNVPVVVRLEGTNVEEGKKILAESGL-N-I---IFATSMEEAAEKA 381 (386)
T ss_pred CCCCEEEEECCCCCCCHHHHH-HHHHHHHHhcC-CCCcEEEEeCCccHHHHHHHHHHcCC-C-c---cccCCHHHHHHHH
Confidence 45777776544 333333322 44444444321 11455333 21 2356777988884 1 1 5899999999876
Q ss_pred Hh
Q 006138 638 NF 639 (659)
Q Consensus 638 ~~ 639 (659)
-.
T Consensus 382 ~~ 383 (386)
T TIGR01016 382 VE 383 (386)
T ss_pred HH
Confidence 53
No 122
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=23.13 E-value=1.2e+02 Score=32.83 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhh---hhhhHHh-hccHhHHHHHHhHHHHHHH
Q 006138 172 TFFAGVFQASLGLL---RLGFIVD-FLSHAAIVGFMGGAATVVC 211 (659)
Q Consensus 172 ~~l~Gi~~l~lg~~---rlg~l~~-~ip~~vi~Gf~~gigi~i~ 211 (659)
++....+.+++|.+ |..++-+ ++|.||+.|++..+-..+.
T Consensus 8 tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l 51 (368)
T PF03616_consen 8 TLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLIL 51 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHH
No 123
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.15 E-value=1.5e+02 Score=31.52 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=32.1
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHhhhHhhhchHHHHHHHHHHHHhhccChHHHHHHh
Q 006138 395 NAGCKTAVSNIVMSMAVMVTLLFLTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHLF 451 (659)
Q Consensus 395 ~~G~~T~la~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~ 451 (659)
+.|.||=-+++.+++.++++-++ -.|.++.|++.-+....--..+.++..|
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l------~~~~~~~A~i~AV~~l~~t~~~s~~~~~ 58 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLL------GLPQPAFAGISAVLCLSPTIKRSLKRAL 58 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCchHHHHHHHhhcccCcchHHHHHHH
Confidence 36777777777777766666522 3577788887766555444445555554
No 124
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=22.11 E-value=1.2e+02 Score=28.61 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=39.6
Q ss_pred CceEEEEEecCCCccchHHH-------------HHHHHHHHHHHhcCCEEEEEcCCHH--------------HHHHHHhC
Q 006138 563 SLHYVILDMGAVGNIDTSGI-------------SMLEEVKKTLDRRELKLVLANPGAE--------------VTKKLDKS 615 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl-------------~~L~~l~~~~~~~gi~l~l~~~~~~--------------v~~~L~~~ 615 (659)
..|.+++|+.++-..+.+.. .-..++.+.++++|.++.++..++. +.+.++..
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 35889999998755432211 2367778888999999999865443 56778888
Q ss_pred CCc
Q 006138 616 KFI 618 (659)
Q Consensus 616 g~~ 618 (659)
|+.
T Consensus 92 gl~ 94 (166)
T TIGR01664 92 KVP 94 (166)
T ss_pred CCC
Confidence 874
No 125
>PLN03211 ABC transporter G-25; Provisional
Probab=22.00 E-value=4.2e+02 Score=31.10 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHHHHhCCCccccCCcceecCHHHHHHHHHhh
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGA--EVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~--~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
+++.+++| ...+.+|+.....+.++.+++.++|.++.++.-++ ++.+..++.-+.+. |+-..+.+.++++++.++.
T Consensus 224 ~P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 224 NPSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred CCCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHC
Confidence 46889999 77999999999999999999988888888775443 45666655444332 3334456788888887764
No 126
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=21.70 E-value=1.7e+02 Score=32.23 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=48.4
Q ss_pred CcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 522 TGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 522 ~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
+.+.+++++|.++=+.++++++.+++..++ +...+|+++..=...+.+..++ .+...+..+.+.
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~-----------~a~~vvl~ldTPGGl~~sm~~i----v~~i~~s~vPV~ 89 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEE-----------NAAAVVLELDTPGGLLDSMRQI----VRAILNSPVPVI 89 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhC-----------CCcEEEEEecCCCchHHHHHHH----HHHHHcCCCCEE
Confidence 478999999999999999999998875432 3678999998777777666554 455555666643
No 127
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=21.56 E-value=2.7e+02 Score=30.72 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=47.5
Q ss_pred CCceEEEEE-ecCCCccchHHHHHHHHHHHHHH-hcCCEEEEEcCCH-HHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 562 SSLHYVILD-MGAVGNIDTSGISMLEEVKKTLD-RRELKLVLANPGA-EVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 562 ~~~~~vIlD-~s~V~~IDsSgl~~L~~l~~~~~-~~gi~l~l~~~~~-~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
++++.|.++ |.+++..|--+ +.+.+..+++. +.-+-+.+.+.+. +-++.|+.+|+ +. ..++|++||++.+-
T Consensus 344 ~~vk~iliNIfGGI~~cd~iA-~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~-~~----~~~~~l~~A~~~~v 417 (422)
T PLN00124 344 DKVKAILVNIFGGIMKCDVIA-SGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGM-TL----ITAEDLDDAAEKAV 417 (422)
T ss_pred CCCcEEEEEecCCccchHHHH-HHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCC-Ce----EEcCCHHHHHHHHH
Confidence 568888887 46788888877 34444444442 1123445556653 56888988887 32 57999999998764
Q ss_pred h
Q 006138 639 F 639 (659)
Q Consensus 639 ~ 639 (659)
.
T Consensus 418 ~ 418 (422)
T PLN00124 418 K 418 (422)
T ss_pred H
Confidence 3
No 128
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.35 E-value=1.8e+02 Score=29.36 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=49.3
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCC-EEEEEcCCHH--HHHHHHhCCCccccCCcceecCHHHHHHHHHhh
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRREL-KLVLANPGAE--VTKKLDKSKFIENMGQEWIYLTVGEAVTACNFR 640 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi-~l~l~~~~~~--v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~ 640 (659)
++.|.++-+.=.+|-+.+ +.++.-|. +++|++|+.. -.-.-..+|-.+.+..-.+|+|++||+..|.-.
T Consensus 5 i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v 76 (242)
T COG0565 5 IRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDLV 76 (242)
T ss_pred cEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCCEE
Confidence 455666655555555444 66676775 7999998763 333334466667777779999999999987765
Q ss_pred cccC
Q 006138 641 LHTC 644 (659)
Q Consensus 641 l~~~ 644 (659)
.-++
T Consensus 77 ~aTt 80 (242)
T COG0565 77 VATT 80 (242)
T ss_pred EEec
Confidence 4444
No 129
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=21.34 E-value=3e+02 Score=30.75 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=45.6
Q ss_pred chhhhhhhhhhhhhhhcCCCccccchhHHHHHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHhh-hhhhHHh
Q 006138 114 LGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLL-RLGFIVD 192 (659)
Q Consensus 114 ~GL~s~~i~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~Gi~~l~lg~~-rlg~l~~ 192 (659)
-|.-.-.+++++-++||+......-...+-.+ .+.+.++ . -+.=++|.+++++|++ |+|-+..
T Consensus 309 Rgi~~eGig~lL~gl~G~gtG~Tt~~ENigll----~vTKVgS---R---------rvvQ~aa~fmI~~~i~gKFgA~fA 372 (510)
T KOG1292|consen 309 RGIGWEGIGSLLAGLFGTGTGSTTSVENIGLL----GVTKVGS---R---------RVVQIAAGFMIFFGIFGKFGAFFA 372 (510)
T ss_pred hhhhhhhHHHHHHHhhCCCccceeeccceeeE----eeeeeee---e---------eehhhhHHHHHHHHHHHHHHHHHH
Confidence 46666779999999999864433221111000 0011110 0 1123457788888887 5899999
Q ss_pred hccHhHHHHHHh
Q 006138 193 FLSHAAIVGFMG 204 (659)
Q Consensus 193 ~ip~~vi~Gf~~ 204 (659)
-||.|++.|..+
T Consensus 373 sIP~piv~~l~c 384 (510)
T KOG1292|consen 373 SIPDPIVGGLLC 384 (510)
T ss_pred cCcHHHHHHHHH
Confidence 999999999443
No 130
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.22 E-value=4e+02 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVT 609 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 609 (659)
+++.+++| ...+.+|......+.++.++++++|..++++.-+.+..
T Consensus 167 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 167 DYPILLLD-EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred CCCEEEEc-CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46899999 67999999999999999999988898988886665443
No 131
>PF14188 DUF4311: Domain of unknown function (DUF4311)
Probab=21.16 E-value=1.2e+02 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=14.1
Q ss_pred hHhhHHHHHHHHH-----HHhhhHHHH
Q 006138 83 LKADLIAGITIAS-----LAIPQGISY 104 (659)
Q Consensus 83 l~~Di~aGltv~~-----~~iPq~~ay 104 (659)
+.+-+++-++|++ ..||+++.-
T Consensus 88 iagaiiG~ivV~~lN~ta~aiP~slq~ 114 (213)
T PF14188_consen 88 IAGAIIGAIVVAFLNSTAAAIPESLQV 114 (213)
T ss_pred HHHhHHHHHHHHHHHhHHHhhhHHHHH
Confidence 4566666666664 358888765
No 132
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=21.01 E-value=4.5e+02 Score=24.56 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.1
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEV 608 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v 608 (659)
+++.+++| ...+.+|......+.++.++++++|..+.++.-+.+.
T Consensus 114 ~p~~lllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 114 NPRILVLD-EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred CCCEEEEE-CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 47899999 6789999999999999999998888888888665543
No 133
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=20.97 E-value=4e+02 Score=24.37 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCc
Q 006138 539 SYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFI 618 (659)
Q Consensus 539 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~ 618 (659)
..+.+++.+.+++. ...+++|+++++. .-+.++++++++.|+++.+... .-+++.++.+++.
T Consensus 4 ~~~v~~l~~~l~~~-----------~~v~v~~~~~l~~------~~~~~lR~~l~~~~~~~~v~KN-tl~~~Al~~t~~~ 65 (155)
T cd00379 4 EELVEELKELLKKY-----------KSVVVVDYRGLTV------AQLTELRKELRESGAKLKVGKN-TLMRRALKGTGFE 65 (155)
T ss_pred HHHHHHHHHHHHhC-----------CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEEeh-HHHHHHHcCCCcc
Confidence 34455556655543 4688999887653 5577899999999999988744 4477789988864
Q ss_pred c
Q 006138 619 E 619 (659)
Q Consensus 619 ~ 619 (659)
+
T Consensus 66 ~ 66 (155)
T cd00379 66 E 66 (155)
T ss_pred c
Confidence 4
No 134
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=20.88 E-value=99 Score=30.09 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred hhchHHHHHHHHHHHHhhcc-ChHHHHHHhccCccceehhhhhhhhhhhhchhhhH
Q 006138 423 HYTPLVVLSAIIMAAMLGLI-DYEAVIHLFKVDKFDFIVCIGAYVGVVFGSIQIGL 477 (659)
Q Consensus 423 ~~iP~~vLa~ili~~~~~li-~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl 477 (659)
..+...+|-..+..+|.++= +...++++++.++.-..+-+.+.++++..+...+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888999999999985 66678889989888777777776666555444333
No 135
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=20.84 E-value=3.3e+02 Score=25.27 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=37.6
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcc
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIE 619 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~ 619 (659)
...+++|+++++. .-+.++++++++.|+++.+... .=+++.++.+++.+
T Consensus 20 ~~v~v~~~~gl~~------~~~~~lR~~lr~~~~~~~V~KN-tL~~~Al~~t~~~~ 68 (157)
T cd05797 20 KSVVVADYRGLTV------AQLTELRKELREAGVKLKVVKN-TLAKRALEGTGFED 68 (157)
T ss_pred CEEEEEecCCCcH------HHHHHHHHHHHHcCCEEEEehh-HHHHHHHhcCCchh
Confidence 4689999997664 4566799999999999987643 44778899888643
No 136
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=20.70 E-value=2.6e+02 Score=28.64 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=46.7
Q ss_pred cCCchHHHHHhhhhhhhhccCCcccccccchhhHhhhcCCCchhHHHHHHHHHHHHHHHhhhHhh
Q 006138 359 IDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSAVNFNAGCKTAVSNIVMSMAVMVTLLFLTPLFH 423 (659)
Q Consensus 359 ~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~v~~~~G~~T~la~iv~a~~~ll~ll~l~~l~~ 423 (659)
.-..-||.++|.+|+-+ -..-=|.+++.-.|...+.+|..++-+..-.++-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGg-avpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGG-AVPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCccc-CCCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566999999999987 34445678889999999999888776666566655555555555544
No 137
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.63 E-value=2e+02 Score=29.82 Aligned_cols=71 Identities=8% Similarity=0.280 Sum_probs=48.3
Q ss_pred EcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Q 006138 529 IDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEV 608 (659)
Q Consensus 529 l~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v 608 (659)
++-|- .+...+|+.+++.|++.. ++-.||.| -.|. ++.|.++.+...+|++.+++.--..++
T Consensus 125 ~qPp~--~~~p~IKE~vR~~I~~A~---------kVIAIVMD--~FTD-----~dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 125 FQPPK--DGQPHIKEVVRRMIQQAQ---------KVIAIVMD--VFTD-----VDIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred eCCCC--CCCCCHHHHHHHHHHHhc---------ceeEEEee--cccc-----HHHHHHHHHHHHhcCCcEEEEechhcC
Confidence 44444 678889999999998762 35556665 4444 457999999999999999997443333
Q ss_pred H---HHHHhCCC
Q 006138 609 T---KKLDKSKF 617 (659)
Q Consensus 609 ~---~~L~~~g~ 617 (659)
. ++-++.++
T Consensus 187 ~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 187 PHFLEMCEKLGV 198 (284)
T ss_pred hHHHHHHHHCCC
Confidence 3 33344444
No 138
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=20.55 E-value=7e+02 Score=24.05 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCceeEec-hHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 521 VTGVLILKIDAPIYFAN-ASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~n-a~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
.+-+.++|+++.+.--+ .+...+++.+.+.+-.. .+..+.-|-|||..-+.==..=.+.|.++++.+-. +.++
T Consensus 4 r~~~~~vrL~~r~~~Ld~~~~~~~~i~~~l~~W~~-----~G~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP~-~~~L 77 (181)
T PF11340_consen 4 RPPVAVVRLDGRLPRLDWPEQVLARILQLLQRWQA-----AGNNVAGIQIDFDAATSRLPAYAQFLQQLRQRLPP-DYRL 77 (181)
T ss_pred CCceeEEEEEeecccCCCCHHHHHHHHHHHHHHHH-----cCCCceEEEEecCccccchHHHHHHHHHHHHhCCC-CceE
Confidence 35678999999988777 77777777776654321 23468899999987654322333455555544443 8888
Q ss_pred EEEcC
Q 006138 600 VLANP 604 (659)
Q Consensus 600 ~l~~~ 604 (659)
-+++.
T Consensus 78 SIT~L 82 (181)
T PF11340_consen 78 SITAL 82 (181)
T ss_pred eeEEe
Confidence 88875
No 139
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.52 E-value=2.2e+02 Score=23.94 Aligned_cols=47 Identities=26% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 588 VKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 588 l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
+.+.+.+.|+++++++ ..+...+.|+..|+.-..... .+++|+++..
T Consensus 55 ~~~~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~---~~i~~vl~~~ 102 (103)
T cd00851 55 AAEFLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE---GTVEEAIEAL 102 (103)
T ss_pred HHHHHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC---CCHHHHHHhh
Confidence 5555666899999985 578899999999984443332 5788888653
No 140
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.28 E-value=2e+02 Score=23.66 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 588 VKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 588 l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+.+.+.++|+++++++ ..+...+.|+..|+.-... .-.+++||++...
T Consensus 45 ~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 4555666899999985 6889999999999843321 3467888888654
No 141
>PRK13499 rhamnose-proton symporter; Provisional
Probab=20.19 E-value=7.5e+02 Score=26.51 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCChhhhHhhHHHHHHHHHHHhhhHHHHHHH--h-CCCccchh---hhhhhhhhhhhhhc---CCCccccchhHHHHHHH
Q 006138 77 RYSFQFLKADLIAGITIASLAIPQGISYAKL--A-NLPPILGL---YSSFVPPLVYAIMG---SSKDLAVGTVAVASLLI 147 (659)
Q Consensus 77 ~Y~~~~l~~Di~aGltv~~~~iPq~~aya~l--a-glpp~~GL---~s~~i~~liy~~fG---ss~~~~~Gp~a~~sl~~ 147 (659)
+.+.+.+.--+++|+.=++-++=|..++..+ + +.|-..|+ .++.+|+++..=+. +++.-..|-.++..+++
T Consensus 67 ~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 67 SFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred hcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 3456667777788887777666666655443 2 66666665 34556666654344 56666677788877777
Q ss_pred HHHHhhh
Q 006138 148 ASFLGQE 154 (659)
Q Consensus 148 ~~~v~~~ 154 (659)
+.++...
T Consensus 147 Gi~l~s~ 153 (345)
T PRK13499 147 GVAIVGR 153 (345)
T ss_pred HHHHHHH
Confidence 7777655
No 142
>PTZ00445 p36-lilke protein; Provisional
Probab=20.07 E-value=2.3e+02 Score=28.16 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCceEEEEEecC--CC-----ccchH---------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Q 006138 562 SSLHYVILDMGA--VG-----NIDTS---------GISMLEEVKKTLDRRELKLVLANPGAEVT 609 (659)
Q Consensus 562 ~~~~~vIlD~s~--V~-----~IDsS---------gl~~L~~l~~~~~~~gi~l~l~~~~~~v~ 609 (659)
..+|.|+.|+.. +. +.|-. +-.-+..+.+++++.|+++.++--++++.
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 368999999865 34 55554 66779999999999999999998877643
Done!