Query 006138
Match_columns 659
No_of_seqs 374 out of 2313
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 1.1E-29 3.9E-34 275.0 31.3 333 83-456 14-361 (429)
2 3llo_A Prestin; STAS domain, c 99.9 1.9E-24 6.6E-29 200.1 12.3 139 494-639 1-140 (143)
3 4dgh_A Sulfate permease family 99.9 2.2E-22 7.5E-27 183.1 10.2 128 505-644 2-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 4.1E-22 1.4E-26 182.5 8.7 131 502-645 2-133 (135)
5 2kln_A Probable sulphate-trans 99.8 1.7E-21 5.8E-26 177.2 8.3 126 509-642 1-126 (130)
6 3ny7_A YCHM protein, sulfate t 99.8 9.5E-19 3.3E-23 156.1 8.2 104 520-636 14-117 (118)
7 2ka5_A Putative anti-sigma fac 99.7 9.4E-17 3.2E-21 144.7 7.6 108 518-639 16-124 (125)
8 3t6o_A Sulfate transporter/ant 99.6 3.8E-16 1.3E-20 139.8 7.4 106 520-638 11-120 (121)
9 1th8_B Anti-sigma F factor ant 99.6 5.6E-16 1.9E-20 137.4 8.1 106 521-639 10-115 (116)
10 1h4x_A SPOIIAA, anti-sigma F f 99.6 1.5E-15 5.3E-20 134.9 10.4 107 521-641 9-115 (117)
11 4hyl_A Stage II sporulation pr 99.6 6.9E-16 2.3E-20 137.2 7.0 104 521-639 11-114 (117)
12 1sbo_A Putative anti-sigma fac 99.6 4.7E-15 1.6E-19 130.0 10.2 100 521-633 11-110 (110)
13 3oiz_A Antisigma-factor antago 99.5 5.7E-15 1.9E-19 127.2 3.2 84 522-618 15-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.4 3.7E-13 1.3E-17 120.5 11.4 108 522-642 11-119 (123)
15 3agd_A Salt-tolerant glutamina 96.4 0.0061 2.1E-07 64.1 8.1 84 522-605 324-445 (456)
16 3bl4_A Uncharacterized protein 88.0 0.35 1.2E-05 42.3 3.6 101 522-639 19-123 (124)
17 3qe7_A Uracil permease; uracil 85.5 1.3 4.4E-05 47.4 7.1 41 337-377 239-283 (429)
18 2q3l_A Uncharacterized protein 81.3 2.3 7.9E-05 37.1 5.8 107 521-638 18-126 (126)
19 3pdw_A Uncharacterized hydrola 65.3 18 0.00061 35.0 8.4 56 563-618 5-65 (266)
20 2pr7_A Haloacid dehalogenase/e 57.3 15 0.00051 31.1 5.5 58 564-621 2-61 (137)
21 3dcm_X AdoMet, uncharacterized 50.9 26 0.00089 32.7 6.2 63 572-640 24-101 (192)
22 2csu_A 457AA long hypothetical 46.9 70 0.0024 34.1 9.8 88 536-642 351-446 (457)
23 3qgm_A P-nitrophenyl phosphata 45.0 30 0.001 33.3 6.1 56 563-618 7-67 (268)
24 3epr_A Hydrolase, haloacid deh 43.1 23 0.0008 34.2 4.9 73 563-637 4-81 (264)
25 3n07_A 3-deoxy-D-manno-octulos 42.8 18 0.00061 33.7 3.9 75 563-641 24-112 (195)
26 3ghf_A Septum site-determining 42.6 78 0.0027 27.0 7.6 80 523-618 16-98 (120)
27 2i33_A Acid phosphatase; HAD s 39.9 22 0.00075 34.8 4.1 57 561-618 56-144 (258)
28 3ib6_A Uncharacterized protein 39.3 25 0.00084 32.2 4.2 58 564-621 3-80 (189)
29 3nvb_A Uncharacterized protein 39.3 1.6E+02 0.0056 30.5 10.9 53 562-614 220-292 (387)
30 3rst_A Signal peptide peptidas 38.0 93 0.0032 29.9 8.3 67 522-599 3-82 (240)
31 2oyc_A PLP phosphatase, pyrido 37.1 47 0.0016 32.9 6.2 73 564-637 21-98 (306)
32 2fp4_B Succinyl-COA ligase [GD 37.1 1.1E+02 0.0038 31.9 9.2 70 562-640 316-391 (395)
33 1zjj_A Hypothetical protein PH 36.3 39 0.0013 32.5 5.4 73 565-639 2-79 (263)
34 1bts_A BAND 3 anion transport 35.6 17 0.00057 22.3 1.5 19 115-133 6-24 (26)
35 2ook_A Hypothetical protein; s 34.3 1.3 4.3E-05 38.8 -5.4 104 521-639 18-127 (127)
36 2yx6_A Hypothetical protein PH 32.3 95 0.0033 26.1 6.6 50 587-639 54-104 (121)
37 2re2_A Uncharacterized protein 31.7 97 0.0033 26.9 6.6 49 587-639 70-119 (136)
38 2gmw_A D,D-heptose 1,7-bisphos 31.3 34 0.0012 31.9 3.8 56 563-618 24-105 (211)
39 3kc2_A Uncharacterized protein 30.6 29 0.00099 35.7 3.4 67 563-631 12-84 (352)
40 3ij5_A 3-deoxy-D-manno-octulos 29.9 1.1E+02 0.0036 28.7 7.1 73 563-641 48-136 (211)
41 2hx1_A Predicted sugar phospha 27.7 51 0.0018 32.0 4.6 74 563-638 13-92 (284)
42 2j01_J 50S ribosomal protein L 27.1 1.8E+02 0.0062 26.3 7.8 48 565-619 23-70 (173)
43 2yxb_A Coenzyme B12-dependent 26.7 3E+02 0.01 24.4 9.2 74 563-644 69-146 (161)
44 1o13_A Probable NIFB protein; 26.6 83 0.0028 27.3 5.2 50 587-639 67-117 (136)
45 2iz6_A Molybdenum cofactor car 26.1 71 0.0024 29.3 4.8 58 581-643 117-174 (176)
46 3n1u_A Hydrolase, HAD superfam 25.7 26 0.00088 32.3 1.8 75 563-641 18-106 (191)
47 3viv_A 441AA long hypothetical 25.7 87 0.003 30.0 5.6 63 520-597 6-68 (230)
48 3kht_A Response regulator; PSI 25.1 86 0.0029 26.4 5.1 77 563-642 51-130 (144)
49 2qxy_A Response regulator; reg 23.4 1.3E+02 0.0043 25.1 5.8 54 563-622 48-103 (142)
50 2r25_B Osmosensing histidine p 22.9 3.1E+02 0.011 22.4 8.9 71 563-637 52-124 (133)
51 3l8h_A Putative haloacid dehal 22.6 70 0.0024 28.4 4.1 57 565-621 2-87 (179)
52 2wfb_A Putative uncharacterize 22.2 1.6E+02 0.0054 24.6 6.1 50 587-639 58-109 (120)
53 1eo1_A Hypothetical protein MT 22.1 1.3E+02 0.0044 25.3 5.5 50 587-639 56-106 (124)
54 1vjr_A 4-nitrophenylphosphatas 22.0 45 0.0016 32.0 2.8 56 562-617 15-75 (271)
55 3gt7_A Sensor protein; structu 21.2 2E+02 0.007 24.3 6.9 74 563-639 51-126 (154)
56 3grc_A Sensor protein, kinase; 20.9 1.6E+02 0.0054 24.4 5.9 58 563-623 50-110 (140)
57 2nu8_B SCS-beta, succinyl-COA 20.8 2.9E+02 0.01 28.5 8.9 85 537-640 294-384 (388)
58 2ehv_A Hypothetical protein PH 20.7 96 0.0033 29.1 4.9 57 537-604 119-180 (251)
59 2wm8_A MDP-1, magnesium-depend 20.5 50 0.0017 29.9 2.6 59 563-621 26-112 (187)
60 2zay_A Response regulator rece 20.4 1.2E+02 0.0041 25.5 5.0 74 563-639 52-127 (147)
61 3u5i_q A0, L10E, 60S acidic ri 20.1 2.8E+02 0.0096 27.8 8.2 43 564-614 23-65 (312)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=1.1e-29 Score=275.02 Aligned_cols=333 Identities=13% Similarity=0.062 Sum_probs=250.2
Q ss_pred hHhhHHHHHHHHHHHhhhHHHHHHHhCCCccchhhhhhhhhhhhhhhcCCC-ccccchhHHH-HHHHHHHHhhhccCCCC
Q 006138 83 LKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSK-DLAVGTVAVA-SLLIASFLGQEVNYNEN 160 (659)
Q Consensus 83 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GL~s~~i~~liy~~fGss~-~~~~Gp~a~~-sl~~~~~v~~~~~~~~~ 160 (659)
+++++++|++..+.+..-.++-..+-|+||..+++++.++++++++++.+| +...|++... +.+. .+.. .+
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~-~i~~-~g----- 86 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVL-LLLP-LG----- 86 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHH-HHGG-GC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHH-HHHh-cC-----
Confidence 688999999988755444444444459999999999999999999986555 4447875332 2222 1222 21
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh--hhh--hHHhhccHhHHHHHHhHHHHHHHHHhhhhhhCccccCCCccHHHHHHH
Q 006138 161 PKLYLHLAFTATFFAGVFQASLGLL--RLG--FIVDFLSHAAIVGFMGGAATVVCLQQLKGILGLEHFTHATDVMSVMHS 236 (659)
Q Consensus 161 ~~~~~~~~~~~~~l~Gi~~l~lg~~--rlg--~l~~~ip~~vi~Gf~~gigi~i~~~ql~~~~G~~~~~~~~~~~~~~~~ 236 (659)
++.+...++++|++++++|++ |+| ++.+++|+.|++.+++.+|+.++..+++...|.... .
T Consensus 87 ----~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~---~-------- 151 (429)
T 3qe7_A 87 ----YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE---G-------- 151 (429)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT---T--------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCC---C--------
Confidence 677889999999999999998 775 999999998888899999999999999875432110 0
Q ss_pred HHhhcCcCchhhHHHHHHHHHHHHHHHHhhhcCCccchhccchhHHHHHHHHHHHHHhcccCCCeEEeecCC-CCCCCCC
Q 006138 237 IFSQTQRWRWESGVLGCGFLFFLLITRYFSKRKPKFFWISAMAPLTSVILGSLLVYLSHAERHGVQVIGYLK-KGLNPPS 315 (659)
Q Consensus 237 ~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~Li~vi~~t~i~~~~~~~~~~v~~vg~ip-~g~p~~~ 315 (659)
+..+++.+.++++++++++++.++.|++.|. ++.|+++++++++++.++..+ .+.+++.| -++|.+.
T Consensus 152 -----~~~~~~~~~la~~tl~iii~~~~~~kg~~~~-----~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~~ 219 (429)
T 3qe7_A 152 -----QTPDSKTIIISITTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTLY 219 (429)
T ss_dssp -----BCCCHHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCCC
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHhcccchh-----hHHHHHHHHHHHHHHHhcCCC--cccccccccccccCCC
Confidence 1246678899999998888877655554432 378999999999999987522 22233333 3566666
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC----cccCCchHHHHHhhhhhhhhccCCcccccccchhh
Q 006138 316 FSDLVFVSPYLTTAIKTGIITGVIAMAEGIAVGRSFAMFKN----YHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRSA 391 (659)
Q Consensus 316 ~p~~~~~~~~~~~~~~~~i~~~iv~~~~~~~~~~~~~~~~~----~~~d~nqEl~a~Gi~Ni~~s~fg~~p~~~s~srS~ 391 (659)
.|++++ ..+..+ +.++++.++|++...++.+++.+ ++.+.|||+.++|++|+++++||++|+|++..+++
T Consensus 220 ~P~f~~--~~i~~i----~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g 293 (429)
T 3qe7_A 220 TPRFEW--FAILTI----LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIG 293 (429)
T ss_dssp CCCCCH--HHHHHH----THHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH
T ss_pred CCcccH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHH
Confidence 665544 444444 44566677777666666555444 45578999999999999999999999999777888
Q ss_pred HhhhcCCCchhHHHHHHHHHHHHHHH--hhhHhhhchHHHHHHHHHHHHhhccChHHHHHH--hccCcc
Q 006138 392 VNFNAGCKTAVSNIVMSMAVMVTLLF--LTPLFHYTPLVVLSAIIMAAMLGLIDYEAVIHL--FKVDKF 456 (659)
Q Consensus 392 v~~~~G~~T~la~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~~~~~~ 456 (659)
+...+|++||++.+++|++++++.++ ++++++.||.++++|+.++ .++++....++.+ .|++..
T Consensus 294 ~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 294 VMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp HHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC
Confidence 88899999999999999988777653 6789999999999997766 9999988888888 677753
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.91 E-value=1.9e-24 Score=200.11 Aligned_cols=139 Identities=28% Similarity=0.543 Sum_probs=123.5
Q ss_pred ccceeeeccccCCccccccccCCCCCCCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecC
Q 006138 494 RPRTSVLGNIPNSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGA 573 (659)
Q Consensus 494 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~ 573 (659)
||++.++|++++++.|+++++|++.++.+++.+++++|+|+|+|+++|++++.+.++..+ .++.+.|||||++
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls~ 73 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNG-------SENIHTVILDFTQ 73 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC------------------CCSEEEEECTT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccCC-------CCCceEEEEECCC
Confidence 799999999999999999999999999999999999999999999999999988764310 1257899999999
Q ss_pred CCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccC-CcceecCHHHHHHHHHh
Q 006138 574 VGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMG-QEWIYLTVGEAVTACNF 639 (659)
Q Consensus 574 V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~-~~~if~s~~~Av~~~~~ 639 (659)
|++||+||+++|.++.++++++|++++++++++++++.|+++|+.+.++ ++++|+|++||+++++.
T Consensus 74 v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 74 VNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSS
T ss_pred CccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999887 78999999999999876
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.87 E-value=2.2e-22 Score=183.10 Aligned_cols=128 Identities=19% Similarity=0.372 Sum_probs=119.2
Q ss_pred CCccccccccCCCCCCCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHH
Q 006138 505 NSRIYRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISM 584 (659)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~ 584 (659)
+++.|+++++|++.+..+++.+++++|+|+|+|+++|++++.+ +. ++.+.|||||++|++||+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDssgl~~ 69 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGS-IQ-----------ETPQILILRLKWVPFMDITGIQT 69 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHH-SS-----------SCCSEEEEECTTCCCCCHHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHH-hc-----------cCCCEEEEECCCCCcccHHHHHH
Confidence 5788999999999999999999999999999999999999764 21 24689999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhcccC
Q 006138 585 LEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLHTC 644 (659)
Q Consensus 585 L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~ 644 (659)
|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++++..+
T Consensus 70 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 70 LEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999987754
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.86 E-value=4.1e-22 Score=182.53 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=111.9
Q ss_pred cccCCccccccccCCCCCCCC-cEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchH
Q 006138 502 NIPNSRIYRNIEHYPNANNVT-GVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTS 580 (659)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~-~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsS 580 (659)
++|+++.|+++++| +.++.| ++.+++++|+|+|+|+++|++++.+. . ++.+.||+||++|++||+|
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDss 68 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-E-----------ETPKVFILRMRRVPVIDAT 68 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-S-----------SCCSEEEEECTTCSCBCHH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-c-----------CCCcEEEEEcCCCCccCHH
Confidence 57899999999999 666666 99999999999999999999988642 1 3478999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhcccCC
Q 006138 581 GISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLHTCE 645 (659)
Q Consensus 581 gl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~~~ 645 (659)
|+++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|+++|++++++.+..++
T Consensus 69 gl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~~~ 133 (135)
T 4dgf_A 69 GMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVETAE 133 (135)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998876543
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.84 E-value=1.7e-21 Score=177.21 Aligned_cols=126 Identities=25% Similarity=0.539 Sum_probs=114.7
Q ss_pred ccccccCCCCCCCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHH
Q 006138 509 YRNIEHYPNANNVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEV 588 (659)
Q Consensus 509 ~~~~~~~~~~~~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l 588 (659)
|+++++||++++.+++.|++++|+|+|+|+++|++++.+.+++. +++.+.|||||++|++||+||+++|.++
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~~ 72 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQL 72 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHHH
Confidence 68899999999999999999999999999999999998765321 1147899999999999999999999999
Q ss_pred HHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhcc
Q 006138 589 KKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 589 ~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 642 (659)
.++++++|++++++++++++++.|+++|+.+.+|++++|+|++||+++++.+..
T Consensus 73 ~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~ 126 (130)
T 2kln_A 73 RTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRHH 126 (130)
T ss_dssp HHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC--
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999998654
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.76 E-value=9.5e-19 Score=156.12 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=96.3
Q ss_pred CCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 520 NVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 520 ~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
..+++.++|++|+|||+|++++++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |+++
T Consensus 14 ~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l 80 (118)
T 3ny7_A 14 VPDDVLVLRVIGPLFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCEL 80 (118)
T ss_dssp CCTTEEEEEEESCBCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEE
T ss_pred CCCCEEEEEEeceeEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEE
Confidence 457899999999999999999999987632 236899999999999999999999999999999 9999
Q ss_pred EEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHH
Q 006138 600 VLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTA 636 (659)
Q Consensus 600 ~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~ 636 (659)
+++++++++++.|+++|+.+.++++++|+|++||++.
T Consensus 81 ~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 81 RVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 9999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.66 E-value=9.4e-17 Score=144.71 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=97.7
Q ss_pred CCCCCcEEEEEEcCceeEechHHHHHHHHH-HHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Q 006138 518 ANNVTGVLILKIDAPIYFANASYLRERIAR-WVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRE 596 (659)
Q Consensus 518 ~~~~~~i~Iirl~g~L~F~na~~~~~~l~~-~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~g 596 (659)
.+..+++.+++++|+|+|+|++.|++.+.+ .+++ +.+.+++||++|++|||||+++|.++.++++++|
T Consensus 16 ~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~-----------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g 84 (125)
T 2ka5_A 16 YKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK-----------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSG 84 (125)
T ss_dssp EEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-----------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC-----------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcC
Confidence 445678999999999999999999999887 5432 3678999999999999999999999999999999
Q ss_pred CEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 597 LKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 597 i~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
+++.++++++++++.|+++|+.+.+ .+|+|.+||+++++.
T Consensus 85 ~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~~ 124 (125)
T 2ka5_A 85 GFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVRR 124 (125)
T ss_dssp CEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTTC
T ss_pred CEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhhc
Confidence 9999999999999999999999888 799999999977643
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.62 E-value=3.8e-16 Score=139.84 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=96.2
Q ss_pred CCCcEEEEEEcCce---eEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHh-c
Q 006138 520 NVTGVLILKIDAPI---YFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDR-R 595 (659)
Q Consensus 520 ~~~~i~Iirl~g~L---~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~-~ 595 (659)
+.+++.+++++|++ +|.|++.+++++.+.+.+ .+.+.+|+||++|+||||+|+++|.++.+++++ +
T Consensus 11 ~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~ 80 (121)
T 3t6o_A 11 HEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQ 80 (121)
T ss_dssp EETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTST
T ss_pred EECCEEEEEEccccccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhc
Confidence 45689999999998 899999999998765421 246899999999999999999999999999999 9
Q ss_pred CCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 596 ELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 596 gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
|+++.++++++++++.|+.+|+.+.+ .+|+|.++|++.+.
T Consensus 81 g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 81 QGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAMA 120 (121)
T ss_dssp TCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHTC
T ss_pred CCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHhc
Confidence 99999999999999999999999988 69999999998764
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.62 E-value=5.6e-16 Score=137.35 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=97.0
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+++|.|++.+++.+.+.+++. +.+.+++||++|++||++|+++|.++.++++++|+++.
T Consensus 10 ~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 79 (116)
T 1th8_B 10 KQDVLIVRLSGELDHHTAEELREQVTDVLENR----------AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMV 79 (116)
T ss_dssp ETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS----------CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ECCEEEEEEeeeeccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEE
Confidence 46789999999999999999999998765421 36789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 601 LANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
++++++++++.|+.+|+.+.+ .+|+|.+||+++++.
T Consensus 80 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 115 (116)
T 1th8_B 80 VCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALGV 115 (116)
T ss_dssp EESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTTC
T ss_pred EEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhccC
Confidence 999999999999999999888 799999999998764
No 10
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.61 E-value=1.5e-15 Score=134.86 Aligned_cols=107 Identities=15% Similarity=0.214 Sum_probs=96.1
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+++|.|++.+++.+.+.+++. +.+.+++||++|++|||+|+++|.++.++++++|+++.
T Consensus 9 ~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 1h4x_A 9 TRETVVIRLFGELDHHAVEQIRAKISTAIFQG----------AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTI 78 (117)
T ss_dssp ETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT----------SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEE
T ss_pred eCCEEEEEEEeEEchhhHHHHHHHHHHHHhcC----------CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999998866432 35789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhc
Q 006138 601 LANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRL 641 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l 641 (659)
++++++++++.|+.+|+.+.+ +|+|.+||+++++.+.
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~~ 115 (117)
T 1h4x_A 79 LLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGIV 115 (117)
T ss_dssp EESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC---
T ss_pred EEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHhh
Confidence 999999999999999998877 8999999999887654
No 11
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.60 E-value=6.9e-16 Score=137.23 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=95.2
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+++|.|++.+++++.+.+++ .. .+|+||++|+|||++|+++|.++.++++++|+++.
T Consensus 11 ~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~-----------~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 78 (117)
T 4hyl_A 11 EQGIDIITLHGHLDTRSSPAVQAAVLPRVTA-----------KG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALV 78 (117)
T ss_dssp ETTEEEEEEEEEECSSSHHHHHHHHGGGCCT-----------TC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ECCEEEEEEEeEEcchhHHHHHHHHHHHHcc-----------CC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEE
Confidence 4689999999999999999999998775432 12 89999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 601 LANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
++++++++++.|+.+|+.+.+ .+|+|.+||++.++.
T Consensus 79 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 114 (117)
T 4hyl_A 79 LVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGS 114 (117)
T ss_dssp EECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC
T ss_pred EEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhcc
Confidence 999999999999999999988 699999999998764
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.58 E-value=4.7e-15 Score=129.97 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=91.6
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLV 600 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~ 600 (659)
.+++.+++++|+++|.|++.+++++.+.+.+. +.+.+++||++|++||++|+++|.++.++++++|+++.
T Consensus 11 ~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (110)
T 1sbo_A 11 QDDKAIVRVQGDIDAYNSSELKEQLRNFISTT----------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFI 80 (110)
T ss_dssp CSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC----------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred eCCEEEEEEeeEEccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999998866532 24789999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHhCCCccccCCcceecCHHHH
Q 006138 601 LANPGAEVTKKLDKSKFIENMGQEWIYLTVGEA 633 (659)
Q Consensus 601 l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~A 633 (659)
++++++++++.|+.+|+.+.+ .+|+|.+||
T Consensus 81 l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~A 110 (110)
T 1sbo_A 81 LSSLKESISRILKLTHLDKIF---KITDTVEEA 110 (110)
T ss_dssp EESCCHHHHHHHHHTTCGGGS---CBCSSGGGC
T ss_pred EEeCCHHHHHHHHHhCcccee---eccCCcccC
Confidence 999999999999999999988 589998876
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.50 E-value=5.7e-15 Score=127.20 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=72.3
Q ss_pred CcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEE
Q 006138 522 TGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVL 601 (659)
Q Consensus 522 ~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l 601 (659)
+++.+++++|+|||+|+++|++++.. . ++.+.+|+||++|+|||+||+++|.++.++++++|+++.+
T Consensus 15 g~~~v~~l~G~L~f~~a~~~~~~l~~----~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 81 (99)
T 3oiz_A 15 GRERIYRVEGQLFYASVEDFMAAFDF----R---------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRI 81 (99)
T ss_dssp SSEEEEEEEEEECGGGHHHHHHTCCT----T---------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEeeEEehhhHHHHHHHHhh----c---------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 46999999999999999999998753 1 2468999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHhCCCc
Q 006138 602 ANPGAEVTKKLDKSKFI 618 (659)
Q Consensus 602 ~~~~~~v~~~L~~~g~~ 618 (659)
+++++++++.|+++|+.
T Consensus 82 ~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 82 VGMNEASETMVDRLAIH 98 (99)
T ss_dssp ESHHHHHTTCC------
T ss_pred EcCCHHHHHHHHHhcCC
Confidence 99999999999999974
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.45 E-value=3.7e-13 Score=120.55 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=96.7
Q ss_pred CcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEE
Q 006138 522 TGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVL 601 (659)
Q Consensus 522 ~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l 601 (659)
.++.++.+.|+++..+++.+++++.+.+.+ .+.+++|+|+++|+++||+|++.|.++.+.++..|.++.+
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l 80 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITG----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL 80 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTS----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHh----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 358999999999999999999999886653 2578999999999999999999999999999999999999
Q ss_pred EcCCHHHHHHHHhCCCc-cccCCcceecCHHHHHHHHHhhcc
Q 006138 602 ANPGAEVTKKLDKSKFI-ENMGQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 602 ~~~~~~v~~~L~~~g~~-~~~~~~~if~s~~~Av~~~~~~l~ 642 (659)
++.+|++.+.|..+|+. +.+ .+|.|+++|++.++...+
T Consensus 81 ~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~ 119 (123)
T 3zxn_A 81 TGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLAR 119 (123)
T ss_dssp ECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhh
Confidence 99999999999999995 555 799999999999886543
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.41 E-value=0.0061 Score=64.11 Aligned_cols=84 Identities=18% Similarity=0.373 Sum_probs=67.3
Q ss_pred CcEEEEEEcCceeEechHHHHHHHHHHH-------------------HHHhhh-------------------hhhccCCC
Q 006138 522 TGVLILKIDAPIYFANASYLRERIARWV-------------------EEEEDK-------------------LKASEESS 563 (659)
Q Consensus 522 ~~i~Iirl~g~L~F~na~~~~~~l~~~i-------------------~~~~~~-------------------~~~~~~~~ 563 (659)
+++.+++++|.+.|+.++++.+++.+.+ +...++ ..+....+
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 3689999999999999999988887751 000000 01112456
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG 605 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~ 605 (659)
.+.||||+++|+.+|..|..++.+..++++..|.++.++.+.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 789999999999999999999999999999999999999876
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=88.01 E-value=0.35 Score=42.32 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=67.6
Q ss_pred CcEEEEEEcC--ceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEE
Q 006138 522 TGVLILKIDA--PIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKL 599 (659)
Q Consensus 522 ~~i~Iirl~g--~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l 599 (659)
+||..+++.+ +++-..+..+-+++.+ +.+ .+...+++|++....++..+-..+.+-. .=-.+
T Consensus 19 dGIl~~~~~~~~~i~~e~A~~~~~~~~~-l~~----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a~ 82 (124)
T 3bl4_A 19 DGILRLTWPRGAAITAADAERAMLRVNQ-LCG----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QASRI 82 (124)
T ss_dssp TSCEEEECSSSSCCCHHHHHHHHHHHHH-HHT----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEEE
T ss_pred CCEEEEEEcCCCccCHHHHHHHHHHHHH-HhC----------CCceEEEEEcccccCCCHHHHHHHhCcc-----ceeEE
Confidence 6899999999 6777787777777766 322 2358999999999889988877776611 11246
Q ss_pred EEEcCCHHHHHHHHh--CCCccccCCcceecCHHHHHHHHHh
Q 006138 600 VLANPGAEVTKKLDK--SKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 600 ~l~~~~~~v~~~L~~--~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+.+.++- .+.+-+ .++...-.+-++|.|.+||++|+++
T Consensus 83 Al~g~s~~-~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 83 ALLGSSPV-DRVLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEECSSGG-GHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEcCCHH-HHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 66766653 222211 1222222334899999999999864
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=85.52 E-value=1.3 Score=47.44 Aligned_cols=41 Identities=7% Similarity=-0.102 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhh----cccCcccCCchHHHHHhhhhhhhhc
Q 006138 337 GVIAMAEGIAVGRSFA----MFKNYHIDGNKEMIAFGMMNIAGSC 377 (659)
Q Consensus 337 ~iv~~~~~~~~~~~~~----~~~~~~~d~nqEl~a~Gi~Ni~~s~ 377 (659)
.+.++.+..++++..+ ++++.+-..--+=++.=++-++|++
T Consensus 239 ~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~ 283 (429)
T 3qe7_A 239 IAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGST 283 (429)
T ss_dssp HHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCC
Confidence 3455555556555543 3444443443444444455555543
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=81.33 E-value=2.3 Score=37.08 Aligned_cols=107 Identities=7% Similarity=0.049 Sum_probs=65.8
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHH--HHHHhcCCE
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVK--KTLDRRELK 598 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~--~~~~~~gi~ 598 (659)
.+++..+++.|.++-...+.+...+.+.+++. . .+--.+.+|++.....+..++ ..++. ....++=-+
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~-------~-~~~i~ll~~~~~f~G~~~~a~--~~d~k~~~~h~~~~~R 87 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGI-------K-TPEIVALIDITELDGLSLHAA--WDDLKLGLKHGKEFKR 87 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTC-------C-SSCEEEEEEEEEEEEECHHHH--HHHHHHHHHHGGGEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhC-------C-CceEEEEEEecCCCCCCHHHH--HHHHHhhhhHHhcCCE
Confidence 34689999999997766655655555544322 1 111567789988887875442 33332 122223348
Q ss_pred EEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 599 LVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 599 l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+.+++-+.=++...+..+.+- -++-+.|.+.++|.+|++
T Consensus 88 iAvV~d~~W~~~~~~~~~~~~-~~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 88 VAIIGQGELQEWATRVANWFT-PGEFKFFEDKRDALDWLC 126 (126)
T ss_dssp EEEECCSHHHHHHHHHHHHHC-SSEEEEESCHHHHHHHHC
T ss_pred EEEEcChHHHHHHHHHHhhcc-CCceeccCCHHHHHHHhC
Confidence 888877665555555544431 134588999999999873
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=65.32 E-value=18 Score=35.02 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=41.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc-----CCHHHHHHHHhCCCc
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN-----PGAEVTKKLDKSKFI 618 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~~g~~ 618 (659)
+.|.|++|+.++-.-+..-+.--.+..++++++|++++++. ....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 37899999999854333333445677788899999999993 345678888888884
No 20
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=57.33 E-value=15 Score=31.05 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=40.4
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCcccc
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENM 621 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~ 621 (659)
.+.+++|+.++-.=+..-..-..++.++++++|+++.++.. ...+.+.++..|+.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhc
Confidence 47899999986633334455677888999999999987754 34456667766655444
No 21
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=50.94 E-value=26 Score=32.75 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=44.2
Q ss_pred cCCCccchHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHHHh--------CCC------ccccCCcceecCHHHHHHH
Q 006138 572 GAVGNIDTSGISMLEEVKKTLDRRE-LKLVLANPGAEVTKKLDK--------SKF------IENMGQEWIYLTVGEAVTA 636 (659)
Q Consensus 572 s~V~~IDsSgl~~L~~l~~~~~~~g-i~l~l~~~~~~v~~~L~~--------~g~------~~~~~~~~if~s~~~Av~~ 636 (659)
++|+.+| +.++.+.++..| .++++++|....++.-++ .|- .+.+..-++++|++||++.
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4677776 455778888888 489999998754432222 232 3455556899999999999
Q ss_pred HHhh
Q 006138 637 CNFR 640 (659)
Q Consensus 637 ~~~~ 640 (659)
|+++
T Consensus 98 ~~~~ 101 (192)
T 3dcm_X 98 IESV 101 (192)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9953
No 22
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=46.94 E-value=70 Score=34.09 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=55.1
Q ss_pred echHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCc--c--chHHHHHHHHHHHHHHhcCCEEEEEcC----CHH
Q 006138 536 ANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGN--I--DTSGISMLEEVKKTLDRRELKLVLANP----GAE 607 (659)
Q Consensus 536 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~--I--DsSgl~~L~~l~~~~~~~gi~l~l~~~----~~~ 607 (659)
++.+.+++.++..+++ +++..|++++..-.+ + |..+ +.+.+..++++ .+..++.+.. .++
T Consensus 351 a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~ 418 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEK 418 (457)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHH
Confidence 4667777777766553 357888888753323 3 2322 33444444443 5555655432 345
Q ss_pred HHHHHHhCCCccccCCcceecCHHHHHHHHHhhcc
Q 006138 608 VTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLH 642 (659)
Q Consensus 608 v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~ 642 (659)
.++.|+..|+ .+|++.++|++.+....+
T Consensus 419 ~~~~L~~~Gi-------p~~~spe~Av~al~~l~~ 446 (457)
T 2csu_A 419 AKELLEKNGI-------PTYERPEDVASAAYALVE 446 (457)
T ss_dssp HHHHHHTTTC-------CEESSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-------CccCCHHHHHHHHHHHHH
Confidence 7888988886 689999999998766443
No 23
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=44.98 E-value=30 Score=33.28 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=40.0
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCc
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFI 618 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~ 618 (659)
..|.|++|+.++-.-+..-+.--.+..++++++|++++++.. ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 368999999998543322222345667888899999999844 34677888888884
No 24
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=43.09 E-value=23 Score=34.22 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=46.1
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc---C--CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN---P--GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~---~--~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
..|.|++|+.++-.-+-..+..-.+..++++++|++++++. . ...+.+.++..|+.. ..+.++.+...+.+..
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~--~~~~ii~~~~~~~~~l 81 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVET--PLETIYTATMATVDYM 81 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHH
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhheecHHHHHHHHH
Confidence 36899999999854333333344466677888999999987 2 245778888888742 2223444444444433
No 25
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=42.83 E-value=18 Score=33.74 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=49.8
Q ss_pred CceEEEEEecCCC-----ccchHHHHHHHHH-------HHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceec
Q 006138 563 SLHYVILDMGAVG-----NIDTSGISMLEEV-------KKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMGQEWIYL 628 (659)
Q Consensus 563 ~~~~vIlD~s~V~-----~IDsSgl~~L~~l-------~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~ 628 (659)
..+.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++.. ...+++.++..|+.+.+.. ..
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QD 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CS
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CC
Confidence 3789999998853 222222 223334 7888999999988854 5668889999998766532 24
Q ss_pred CHHHHHHHHHhhc
Q 006138 629 TVGEAVTACNFRL 641 (659)
Q Consensus 629 s~~~Av~~~~~~l 641 (659)
+-.++++.+.+++
T Consensus 100 ~k~~~~~~~~~~~ 112 (195)
T 3n07_A 100 DKVQAYYDICQKL 112 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 4556666665544
No 26
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=42.56 E-value=78 Score=26.98 Aligned_cols=80 Identities=9% Similarity=0.214 Sum_probs=53.7
Q ss_pred cEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCC-ccchHHHHHHHHHHHHHHhcCCEEEE
Q 006138 523 GVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVG-NIDTSGISMLEEVKKTLDRRELKLVL 601 (659)
Q Consensus 523 ~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~-~IDsSgl~~L~~l~~~~~~~gi~l~l 601 (659)
+..++++.. .+-+.+++++.+.++..++ -=.-..||||++.+. .+| |.++.+.++++|..++=
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP~------FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vG 79 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAPA------FLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIG 79 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSHH------HHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhChH------hhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEE
Confidence 355666543 4566777777776665421 002468999999886 344 67788889999998854
Q ss_pred -EcCCHH-HHHHHHhCCCc
Q 006138 602 -ANPGAE-VTKKLDKSKFI 618 (659)
Q Consensus 602 -~~~~~~-v~~~L~~~g~~ 618 (659)
.+++++ .++..+..|+-
T Consensus 80 V~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 80 VSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EESCCCHHHHHHHHHHTCC
T ss_pred EeCCCcHHHHHHHHHCCCC
Confidence 455544 78888888884
No 27
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=39.94 E-value=22 Score=34.85 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=42.0
Q ss_pred CCCceEEEEEecCCCccchHH---------------------------HHHHHHHHHHHHhcCCEEEEEcCCH-----HH
Q 006138 561 ESSLHYVILDMGAVGNIDTSG---------------------------ISMLEEVKKTLDRRELKLVLANPGA-----EV 608 (659)
Q Consensus 561 ~~~~~~vIlD~s~V~~IDsSg---------------------------l~~L~~l~~~~~~~gi~l~l~~~~~-----~v 608 (659)
....+.||+|+.++- +|+.. ..-..++.+.++++|+++.++..++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 456899999999865 56542 1224567888999999999986554 46
Q ss_pred HHHHHhCCCc
Q 006138 609 TKKLDKSKFI 618 (659)
Q Consensus 609 ~~~L~~~g~~ 618 (659)
.+.|+..|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 7788888886
No 28
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=39.33 E-value=25 Score=32.16 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=39.7
Q ss_pred ceEEEEEecCCCcc-----------c----hHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCcccc
Q 006138 564 LHYVILDMGAVGNI-----------D----TSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENM 621 (659)
Q Consensus 564 ~~~vIlD~s~V~~I-----------D----sSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~ 621 (659)
.+.|++|+.++-.- + ..-..-..++.+.++++|+++.++..+ ..+.+.++..|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 57888888775511 1 122233456778888999999887542 5688899999986655
No 29
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=39.32 E-value=1.6e+02 Score=30.49 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=38.8
Q ss_pred CCceEEEEEecCCCcc-----c-------------hHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHh
Q 006138 562 SSLHYVILDMGAVGNI-----D-------------TSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDK 614 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~I-----D-------------sSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~ 614 (659)
.++|.+|+|+.++-.= | ...-.-+.++.+.++++|+++.++.. ++.+++.++.
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 5799999999886422 1 12234578888999999999999854 4567788876
No 30
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=37.96 E-value=93 Score=29.88 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=44.7
Q ss_pred CcEEEEEEcCceeEe------------chHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHH
Q 006138 522 TGVLILKIDAPIYFA------------NASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVK 589 (659)
Q Consensus 522 ~~i~Iirl~g~L~F~------------na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~ 589 (659)
++|.+++++|++.=. +.+.+.+.+.+.-+ .++++.|+|+... ..-|..+.+.+.+..
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l 71 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKKL 71 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHHH
Confidence 468888888887543 23455555554322 2468999998764 466777777777777
Q ss_pred HHHHh-cCCEE
Q 006138 590 KTLDR-RELKL 599 (659)
Q Consensus 590 ~~~~~-~gi~l 599 (659)
+.+++ .+..+
T Consensus 72 ~~~~~~~~kPV 82 (240)
T 3rst_A 72 EEIKKETKKPI 82 (240)
T ss_dssp HHHHHHHCCCE
T ss_pred HHHHHhCCCeE
Confidence 77776 45544
No 31
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=37.10 E-value=47 Score=32.86 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=46.2
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
.+.+++|+.++-+-+..-...-.+..++++++|++++++.. ...+.+.++..|+.. ...+.++.+-..+....
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~~-~~~~~i~~~~~~~~~~l 98 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGG-LRAEQLFSSALCAARLL 98 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCCS-CCGGGEEEHHHHHHHHH
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCCc-CChhhEEcHHHHHHHHH
Confidence 68999999987664443333345667788889999998763 235778888888741 22334554444444333
No 32
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=37.09 E-value=1.1e+02 Score=31.87 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCceEEEEEe-cCCCccchHHHHHHHHHHHHHHhcCCE--EEEEcCCH-HHHHHHHhCCCccccCCccee--cCHHHHHH
Q 006138 562 SSLHYVILDM-GAVGNIDTSGISMLEEVKKTLDRRELK--LVLANPGA-EVTKKLDKSKFIENMGQEWIY--LTVGEAVT 635 (659)
Q Consensus 562 ~~~~~vIlD~-s~V~~IDsSgl~~L~~l~~~~~~~gi~--l~l~~~~~-~v~~~L~~~g~~~~~~~~~if--~s~~~Av~ 635 (659)
++++.++++. .++...|.-+ +.+.+..+++. .++. +.+.+.+. +-++.|+.+|+ .+| +|.++|.+
T Consensus 316 ~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~L~~~gl-------~~~~~~~~~~Aa~ 386 (395)
T 2fp4_B 316 PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNILTNSGL-------PITSAVDLEDAAK 386 (395)
T ss_dssp TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHHHHHTCS-------CCEECSSHHHHHH
T ss_pred CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHHHCCC-------ceEeCCCHHHHHH
Confidence 4678888766 6777777776 55555555552 3444 44566664 37788888885 455 99999998
Q ss_pred HHHhh
Q 006138 636 ACNFR 640 (659)
Q Consensus 636 ~~~~~ 640 (659)
.+-..
T Consensus 387 ~~v~~ 391 (395)
T 2fp4_B 387 KAVAS 391 (395)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77654
No 33
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=36.30 E-value=39 Score=32.55 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=44.5
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 565 HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
+.+++|+.++-.-+..-+..-.+..++++++|+++.++..+ .++.+.|++.|+.. ..+.++.+...+.++++.
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~--~~~~i~~~~~~~~~~l~~ 79 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV--SSSIIITSGLATRLYMSK 79 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEEecHHHHHHHHHH
Confidence 67899998876533211222345566778889999888653 34666777677742 224566665555555544
No 34
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=35.61 E-value=17 Score=22.31 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhhhhhcCCC
Q 006138 115 GLYSSFVPPLVYAIMGSSK 133 (659)
Q Consensus 115 GL~s~~i~~liy~~fGss~ 133 (659)
.+.++.+.+++|++|++.|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4678888888999888765
No 35
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=34.28 E-value=1.3 Score=38.84 Aligned_cols=104 Identities=8% Similarity=0.061 Sum_probs=63.5
Q ss_pred CCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHH---hc--
Q 006138 521 VTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLD---RR-- 595 (659)
Q Consensus 521 ~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~---~~-- 595 (659)
.+++..+++.|.++-..-+.+...+.+.+++ .+.++++ +.+|++.....+..+ +.++++ ++
T Consensus 18 ~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~-------~~~~~i~-lL~~~~~f~G~~~~A------~~~d~k~~~~h~~ 83 (127)
T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQ-------VDQPKVS-LFLDATELDGWDLRA------AWDDLKLGLKHKS 83 (127)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTT-------CCCSSCC-EEEEEEEEEEECTTC------GGGGCCCCCTTSC
T ss_pred CCCEEEEEEeeeECHHHHHHHHHHHHHHHhh-------ccCCCEE-EEEEccCCCCCCHHH------HHHHHHhhhhhHh
Confidence 3578999999999777766666666665543 0013445 889988887777443 222222 11
Q ss_pred -CCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 596 -ELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 596 -gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
=-++.+++-+.=++...+..+.+- -++-+.|++.++|.+|+++
T Consensus 84 ~~~RiAvV~d~~W~~~~~~~~~~~~-~~evk~F~~~~~A~~Wl~e 127 (127)
T 2ook_A 84 EFERVAILGNKDWQEWAAKIGSWFI-AGEIKYFEDEDDALKWLRY 127 (127)
T ss_dssp CEEEEEEECCSSCCTTTTTGGGGCC-EEEEEEESCHHHHHHHHHC
T ss_pred cCCEEEEEcChHHHHHHHHHHhhCc-CCceEccCCHHHHHHHHhC
Confidence 236777765443333333333331 1345889999999999863
No 36
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=32.33 E-value=95 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 587 EVKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 587 ~l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+.+.+.++|+++++++ ..+..++.|+..|+.-..+ .-.+++||++...+
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIG 104 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHc
Confidence 55666777899999985 5888999999999843332 23578999998765
No 37
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=31.72 E-value=97 Score=26.89 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 587 EVKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 587 ~l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+.+.+.+.|+++++++ ..+..++.|+. |+.-..+. -.+++||++...+
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~~---~~~veeal~~~~~ 119 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIVP---EMPVADALKLILE 119 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEECC---SCBHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEcC---CCCHHHHHHHHHh
Confidence 45666677899999996 57888999999 98433331 2589999998766
No 38
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=31.27 E-value=34 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=40.3
Q ss_pred CceEEEEEecCCCccch---------HHHHHHHHHHHHHHhcCCEEEEEcCCH-----------------HHHHHHHhCC
Q 006138 563 SLHYVILDMGAVGNIDT---------SGISMLEEVKKTLDRRELKLVLANPGA-----------------EVTKKLDKSK 616 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDs---------Sgl~~L~~l~~~~~~~gi~l~l~~~~~-----------------~v~~~L~~~g 616 (659)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++..+. .+.+.++..|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 36899999998765543 223345677788899999998875543 4677888888
Q ss_pred Cc
Q 006138 617 FI 618 (659)
Q Consensus 617 ~~ 618 (659)
+.
T Consensus 104 l~ 105 (211)
T 2gmw_A 104 VD 105 (211)
T ss_dssp CC
T ss_pred Cc
Confidence 73
No 39
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=30.60 E-value=29 Score=35.75 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=48.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHH-hCCCccccCCcceecCHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPG-----AEVTKKLD-KSKFIENMGQEWIYLTVG 631 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~-~~g~~~~~~~~~if~s~~ 631 (659)
..+.+++|+.+|-+-+...+.--.+..+.++++|+++.++..+ .+..+.|+ ..|+. ..+++++.+..
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~~ 84 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSHT 84 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTTG
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehHH
Confidence 4689999999998877666666677788888999999887543 45677777 57873 34556665543
No 40
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=29.87 E-value=1.1e+02 Score=28.69 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=48.9
Q ss_pred CceEEEEEecCCCccchH--------------HHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccCCcce
Q 006138 563 SLHYVILDMGAVGNIDTS--------------GISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMGQEWI 626 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsS--------------gl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~i 626 (659)
..+.||+|+.++- +|+. -...+ +.++++++|+++.++.. ...+++.++..|+.+.+...
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~-- 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ-- 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--
Confidence 4789999998862 2221 00111 67888999999998854 55788999999997766422
Q ss_pred ecCHHHHHHHHHhhc
Q 006138 627 YLTVGEAVTACNFRL 641 (659)
Q Consensus 627 f~s~~~Av~~~~~~l 641 (659)
.+-.++++.+.+++
T Consensus 123 -k~K~~~l~~~~~~l 136 (211)
T 3ij5_A 123 -SDKLVAYHELLATL 136 (211)
T ss_dssp -SSHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHc
Confidence 44566666665543
No 41
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=27.74 E-value=51 Score=32.03 Aligned_cols=74 Identities=8% Similarity=0.002 Sum_probs=46.5
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCCc-cccCCcceecCHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKFI-ENMGQEWIYLTVGEAVTA 636 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~-~~~~~~~if~s~~~Av~~ 636 (659)
..+.+++|+.++-+-+..-+..-.+..++++++|+++.++.. ...+.+.++..|+. .. .+.++.+.+.+.+.
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~~~~--~~~ii~~~~~~~~~ 90 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLFSIT--ADKIISSGMITKEY 90 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCTTCC--GGGEEEHHHHHHHH
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcCCCC--HhhEEcHHHHHHHH
Confidence 378999999987654322222233556777889999998863 34677888888875 22 23455554444444
Q ss_pred HH
Q 006138 637 CN 638 (659)
Q Consensus 637 ~~ 638 (659)
++
T Consensus 91 l~ 92 (284)
T 2hx1_A 91 ID 92 (284)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 42
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=27.12 E-value=1.8e+02 Score=26.30 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=37.6
Q ss_pred eEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCcc
Q 006138 565 HYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIE 619 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~ 619 (659)
..+++|+++++. .-+.++++++++.|+++.+... .=+++.++.+++.+
T Consensus 23 ~v~v~~~~gltv------~~~~~LR~~lr~~g~~~~V~KN-tL~~~Al~~~~~~~ 70 (173)
T 2j01_J 23 SFFLVNYQGLPA------KETHALRQALKQNGARLFVAKN-TLIRLALKELGLPE 70 (173)
T ss_pred EEEEEEcCCCCH------HHHHHHHHHHHHCCcEEEEehh-HHHHHHHhcCCCCc
Confidence 689999998875 4456789999999999987754 34788888888754
No 43
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.65 E-value=3e+02 Score=24.35 Aligned_cols=74 Identities=9% Similarity=0.061 Sum_probs=45.9
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcC---CEEEEEcCCH-HHHHHHHhCCCccccCCcceecCHHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRE---LKLVLANPGA-EVTKKLDKSKFIENMGQEWIYLTVGEAVTACN 638 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~g---i~l~l~~~~~-~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~ 638 (659)
+...|.+-+... +.+..+.++.+.+++.| +.+++-+... +-.+.++..|....++++ .+.++++++++
T Consensus 69 ~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~~ 140 (161)
T 2yxb_A 69 DVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKVR 140 (161)
T ss_dssp TCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHHH
T ss_pred CCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHHH
Confidence 466777755543 45577788888887765 6677776533 234457778875434222 14577888887
Q ss_pred hhcccC
Q 006138 639 FRLHTC 644 (659)
Q Consensus 639 ~~l~~~ 644 (659)
+.+...
T Consensus 141 ~~~~~~ 146 (161)
T 2yxb_A 141 KLAEEK 146 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766543
No 44
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=26.59 E-value=83 Score=27.34 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 587 EVKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 587 ~l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+.+.+.++|+++++++ ..+..++.|+..|+.-..+ .-.+++||++...+
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~ 117 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLS 117 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHh
Confidence 45666777899999986 5888999999999943332 23589999998754
No 45
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=26.06 E-value=71 Score=29.26 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHhhccc
Q 006138 581 GISMLEEVKKTLDRRELKLVLANPGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNFRLHT 643 (659)
Q Consensus 581 gl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~~l~~ 643 (659)
|.++|.|+...+ +.+..+++.+. +.+.+-|-+..-.+.+ .+.+|.+|+++.+++.++.
T Consensus 117 g~GTL~E~~~al-~~~kpV~~l~~-~~~~~gfi~~~~~~~i---~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 117 GPGTAAEVALAL-KAKKPVVLLGT-QPEAEKFFTSLDAGLV---HVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CHHHHHHHHHHH-HTTCCEEEESC-CHHHHHHHHHHCTTTE---EEESSHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHH-HhCCcEEEEcC-cccccccCChhhcCeE---EEcCCHHHHHHHHHHHHHh
Confidence 578999999888 57899999987 4444444333222333 6889999999999876643
No 46
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=25.72 E-value=26 Score=32.33 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCc-----cchHHHHHHHHH-------HHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceec
Q 006138 563 SLHYVILDMGAVGN-----IDTSGISMLEEV-------KKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMGQEWIYL 628 (659)
Q Consensus 563 ~~~~vIlD~s~V~~-----IDsSgl~~L~~l-------~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~ 628 (659)
+.+.+++|+.++-. .|..+ ..+.++ .+.++++|+++.++.. ...+.+.++..|+.+.+.. + .
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~-k 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q-V 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-S
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-C
Confidence 47899999988642 22211 122333 7888999999998854 4578889999998766532 2 2
Q ss_pred CHHHHHHHHHhhc
Q 006138 629 TVGEAVTACNFRL 641 (659)
Q Consensus 629 s~~~Av~~~~~~l 641 (659)
+-.++++.+.+++
T Consensus 94 pk~~~~~~~~~~~ 106 (191)
T 3n1u_A 94 DKRSAYQHLKKTL 106 (191)
T ss_dssp SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh
Confidence 2355665555443
No 47
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=25.67 E-value=87 Score=30.02 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=40.0
Q ss_pred CCCcEEEEEEcCceeEechHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCC
Q 006138 520 NVTGVLILKIDAPIYFANASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRREL 597 (659)
Q Consensus 520 ~~~~i~Iirl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi 597 (659)
..+.+.++.++|+++-..++++.+.+.+.-+ ++.+.|+|....-..-. ....++++.+++...
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~-----------~~~~~Ivl~inspGG~v----~~~~~i~~~i~~~~~ 68 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPGGRA----DAMMNIVQRIQQSKI 68 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHH-----------TTCSEEEEEEEBSCEEH----HHHHHHHHHHHTCSS
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhc-----------CCCCEEEEEEeCCCcCH----HHHHHHHHHHHhCCC
Confidence 4467999999999998888888888876422 13678888654322222 223345555554433
No 48
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.09 E-value=86 Score=26.35 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=44.3
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccCCcc-eecCHHHHHHHHHh
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMGQEW-IYLTVGEAVTACNF 639 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~-if~s~~~Av~~~~~ 639 (659)
++..|++|+.- =|..|++.+..+.+.-...+..+++... ..+........|..+.+.+.. -...+.++++.+..
T Consensus 51 ~~dlii~D~~l---~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 51 KYDLIILDIGL---PIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCSEEEECTTC---GGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 46789999763 2556877777776532334555655543 455555566788877764332 23444555555444
Q ss_pred hcc
Q 006138 640 RLH 642 (659)
Q Consensus 640 ~l~ 642 (659)
+..
T Consensus 128 ~~~ 130 (144)
T 3kht_A 128 YWL 130 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 49
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.44 E-value=1.3e+02 Score=25.11 Aligned_cols=54 Identities=7% Similarity=0.266 Sum_probs=34.4
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccC
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMG 622 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~ 622 (659)
++..+++|+ .. |..|.+.+..+.+.. .+..+++... ..+......+.|..+.+.
T Consensus 48 ~~dlvi~d~--~~--~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (142)
T 2qxy_A 48 KIDLVFVDV--FE--GEESLNLIRRIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYIL 103 (142)
T ss_dssp CCSEEEEEC--TT--THHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEE
T ss_pred CCCEEEEeC--CC--CCcHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEe
Confidence 468999998 43 567877777776542 3566666543 344455555677766653
No 50
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=22.89 E-value=3.1e+02 Score=22.37 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=38.1
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEE-cC-CHHHHHHHHhCCCccccCCcceecCHHHHHHHH
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLA-NP-GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTAC 637 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~-~~-~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~ 637 (659)
++..+++|+. ++.+ +|++.+..+.+... ....+++. +. ..+......+.|..+.+.+-.-...+.++++.+
T Consensus 52 ~~dlvllD~~-mp~~--~G~~~~~~lr~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 124 (133)
T 2r25_B 52 NYNMIFMDVQ-MPKV--DGLLSTKMIRRDLG-YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEF 124 (133)
T ss_dssp CCSEEEECSC-CSSS--CHHHHHHHHHHHSC-CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCCC--ChHHHHHHHHhhcC-CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 4678999986 3444 47777777665322 23455444 33 334444455678777664322223344444443
No 51
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=22.56 E-value=70 Score=28.38 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred eEEEEEecCCCccchH----------HHHHHHHHHHHHHhcCCEEEEEcCCH-----------------HHHHHHHhCC-
Q 006138 565 HYVILDMGAVGNIDTS----------GISMLEEVKKTLDRRELKLVLANPGA-----------------EVTKKLDKSK- 616 (659)
Q Consensus 565 ~~vIlD~s~V~~IDsS----------gl~~L~~l~~~~~~~gi~l~l~~~~~-----------------~v~~~L~~~g- 616 (659)
|.+++|+.++-.-+.. -..-..++.++++++|+++.++..++ .+.+.++..|
T Consensus 2 k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 81 (179)
T 3l8h_A 2 KLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGG 81 (179)
T ss_dssp CEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 5688888776443321 11234567788889999998876543 4577788888
Q ss_pred -Ccccc
Q 006138 617 -FIENM 621 (659)
Q Consensus 617 -~~~~~ 621 (659)
+...+
T Consensus 82 ~~~~~~ 87 (179)
T 3l8h_A 82 VVDAIF 87 (179)
T ss_dssp CCCEEE
T ss_pred ceeEEE
Confidence 65444
No 52
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=22.19 E-value=1.6e+02 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceec-CHHHHHHHHHh
Q 006138 587 EVKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYL-TVGEAVTACNF 639 (659)
Q Consensus 587 ~l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~-s~~~Av~~~~~ 639 (659)
.+.+.+.++|+++++++ ..+...+.|+..|+.-..+ .-. +++||++...+
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~ 109 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLD 109 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHc
Confidence 34566667899999986 5888999999999843322 134 78999988765
No 53
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=22.06 E-value=1.3e+02 Score=25.34 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCEEEEEc-CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 587 EVKKTLDRRELKLVLAN-PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 587 ~l~~~~~~~gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
.+.+.+.++|+++++++ ..+...+.|+..|+.-..+ .-.+++||++...+
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~ 106 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTE 106 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHT
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHh
Confidence 35566778999999996 5888999999999843332 23589999998765
No 54
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=22.04 E-value=45 Score=31.99 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=38.6
Q ss_pred CCceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC-----CHHHHHHHHhCCC
Q 006138 562 SSLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP-----GAEVTKKLDKSKF 617 (659)
Q Consensus 562 ~~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~ 617 (659)
...+.+++|+.++-.=+..-...-.+..++++++|+++.++.. .....+.++..|+
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~ 75 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGV 75 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4678999999886543322122234566788899999998872 2457778888776
No 55
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.17 E-value=2e+02 Score=24.34 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=40.8
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEc--CCHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLAN--PGAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
++..|++|+.- . |..|++.+..+.+.-...++.+++.. ...+........|..+.+.+-.-...+.++++.+..
T Consensus 51 ~~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 51 RPDLIISDVLM-P--EMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 46789999763 3 44577777776654322455555543 344455555567777766432222334444444433
No 56
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.88 E-value=1.6e+02 Score=24.38 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=37.2
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH---HHHhCCCccccCC
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTK---KLDKSKFIENMGQ 623 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~---~L~~~g~~~~~~~ 623 (659)
++..|++|..- . |..|.+.+..+.+.....+..+++.....+... .....|..+.+.+
T Consensus 50 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 50 PYAAMTVDLNL-P--DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 46789999763 3 456888887777654556788888766554333 2344666666543
No 57
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=20.77 E-value=2.9e+02 Score=28.49 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEe-cCCCccchHHHHHHHHHHHHHHhcCCEE--EEEcCCH-HHHHHH
Q 006138 537 NASYLRERIARWVEEEEDKLKASEESSLHYVILDM-GAVGNIDTSGISMLEEVKKTLDRRELKL--VLANPGA-EVTKKL 612 (659)
Q Consensus 537 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~-s~V~~IDsSgl~~L~~l~~~~~~~gi~l--~l~~~~~-~v~~~L 612 (659)
+.+++++.++-.++ .++++.++++. .+++..|.-+ +.+.+..+++ +.++.+ .+.+.+. +-++.|
T Consensus 294 ~~~~~~~~~~~il~----------d~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~l 361 (388)
T 2nu8_B 294 TKERVTEAFKIILS----------DDKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp CHHHHHHHHHHHHT----------STTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhc----------CCCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHHH
Confidence 45555555544332 24567777664 7777777766 4555555554 244444 4556554 566788
Q ss_pred HhCCCccccCCccee--cCHHHHHHHHHhh
Q 006138 613 DKSKFIENMGQEWIY--LTVGEAVTACNFR 640 (659)
Q Consensus 613 ~~~g~~~~~~~~~if--~s~~~Av~~~~~~ 640 (659)
+.+|+ .+| +|.++|.+.+-..
T Consensus 362 ~~~g~-------~~~~~~~~~~aa~~~v~~ 384 (388)
T 2nu8_B 362 ADSGL-------NIIAAKGLTDAAQQVVAA 384 (388)
T ss_dssp HTTCS-------SEEECSSHHHHHHHHHHH
T ss_pred HHCCC-------ceecCCCHHHHHHHHHHH
Confidence 88875 456 9999999876543
No 58
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=20.65 E-value=96 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhccCCCceEEEEEecCCCccc-----hHHHHHHHHHHHHHHhcCCEEEEEcC
Q 006138 537 NASYLRERIARWVEEEEDKLKASEESSLHYVILDMGAVGNID-----TSGISMLEEVKKTLDRRELKLVLANP 604 (659)
Q Consensus 537 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vIlD~s~V~~ID-----sSgl~~L~~l~~~~~~~gi~l~l~~~ 604 (659)
+.+.+.+++.+.++.. +++.+++| +....+| ....+.+.++.+.++++|..++++.-
T Consensus 119 ~~~~~~~~~~~~l~~~----------~p~~lilD-ep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAI----------NAKRLVID-SIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp CHHHHHHHHHHHHHHT----------TCSEEEEE-CHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred cHHHHHHHHHHHHHhh----------CCCEEEEc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3444555555544432 46889999 5555665 55556689999999999999888754
No 59
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=20.54 E-value=50 Score=29.89 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=40.9
Q ss_pred CceEEEEEecCCCc------------------------cc-hHHHHHHHHHHHHHHhcCCEEEEEcCC---HHHHHHHHh
Q 006138 563 SLHYVILDMGAVGN------------------------ID-TSGISMLEEVKKTLDRRELKLVLANPG---AEVTKKLDK 614 (659)
Q Consensus 563 ~~~~vIlD~s~V~~------------------------ID-sSgl~~L~~l~~~~~~~gi~l~l~~~~---~~v~~~L~~ 614 (659)
..+.|++|+.++-. .+ ..-..-..++.+.++++|+++.++..+ ..+++.++.
T Consensus 26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~ 105 (187)
T 2wm8_A 26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLEL 105 (187)
T ss_dssp SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHH
T ss_pred ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHH
Confidence 36899999998654 11 111234566777888899999887543 457888999
Q ss_pred CCCcccc
Q 006138 615 SKFIENM 621 (659)
Q Consensus 615 ~g~~~~~ 621 (659)
.|+.+.+
T Consensus 106 ~gl~~~f 112 (187)
T 2wm8_A 106 FDLFRYF 112 (187)
T ss_dssp TTCTTTE
T ss_pred cCcHhhc
Confidence 9886655
No 60
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.37 E-value=1.2e+02 Score=25.46 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=39.7
Q ss_pred CceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcC--CHHHHHHHHhCCCccccCCcceecCHHHHHHHHHh
Q 006138 563 SLHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANP--GAEVTKKLDKSKFIENMGQEWIYLTVGEAVTACNF 639 (659)
Q Consensus 563 ~~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~~~if~s~~~Av~~~~~ 639 (659)
++..+++|+.- . |..|++.+..+.+.-...+..+++... ..+........|..+.+.+..-...+.++++.+..
T Consensus 52 ~~dlii~d~~l-~--~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 52 HPHLIITEANM-P--KISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCC-C--CCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 36789999753 2 445777776666532234566555433 34444445567777766432222334444444433
No 61
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=20.15 E-value=2.8e+02 Score=27.78 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCccchHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHh
Q 006138 564 LHYVILDMGAVGNIDTSGISMLEEVKKTLDRRELKLVLANPGAEVTKKLDK 614 (659)
Q Consensus 564 ~~~vIlD~s~V~~IDsSgl~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~ 614 (659)
...+|+|+++++ ..-+.++++++++.+ ++. ++=+.-+++.++.
T Consensus 23 ~~v~vv~~~gl~------v~ql~~LR~~lR~~~-~~~-V~KNTL~r~Al~~ 65 (312)
T 3u5i_q 23 KSLFVVGVDNVS------SQQMHEVRKELRGRA-VVL-MGKNTMVRRAIRG 65 (312)
T ss_dssp SEEEEEECSSCC------HHHHHHHHHHHSSSC-EEE-ECCHHHHHHHHHT
T ss_pred CEEEEEecCCCC------HHHHHHHHHHHhcCc-eEE-EeehHHHHHHHhh
Confidence 578999999887 577889999999876 444 5555557888887
Done!