Query 006139
Match_columns 659
No_of_seqs 193 out of 559
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 17:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yus_A SWI/SNF-related matrix- 99.5 3.6E-15 1.2E-19 125.5 5.5 59 11-69 5-63 (79)
2 2yum_A ZZZ3 protein, zinc fing 99.5 2.4E-14 8.1E-19 117.2 6.3 54 22-75 6-65 (75)
3 2cu7_A KIAA1915 protein; nucle 99.4 1.5E-13 5.1E-18 112.3 7.4 55 21-75 6-60 (72)
4 2iw5_B Protein corest, REST co 99.4 1.1E-13 3.9E-18 136.8 5.9 66 9-74 118-183 (235)
5 2elk_A SPCC24B10.08C protein; 99.3 1.7E-12 5.7E-17 102.7 5.8 47 24-70 9-57 (58)
6 2xag_B REST corepressor 1; ami 99.3 1.1E-12 3.7E-17 140.6 6.0 65 11-75 367-431 (482)
7 1x41_A Transcriptional adaptor 99.3 4.6E-12 1.6E-16 100.4 6.5 49 22-70 6-55 (60)
8 1guu_A C-MYB, MYB proto-oncoge 99.2 4E-11 1.4E-15 91.8 6.4 47 23-69 2-49 (52)
9 2eqr_A N-COR1, N-COR, nuclear 99.2 4.7E-11 1.6E-15 95.4 6.7 47 19-65 7-53 (61)
10 2cqr_A RSGI RUH-043, DNAJ homo 99.1 1.2E-10 4E-15 97.3 7.6 48 22-69 16-67 (73)
11 2d9a_A B-MYB, MYB-related prot 99.1 8.8E-11 3E-15 92.4 5.8 48 22-69 6-54 (60)
12 1gvd_A MYB proto-oncogene prot 99.1 8.3E-11 2.8E-15 90.2 5.4 47 23-69 2-49 (52)
13 2ltp_A Nuclear receptor corepr 98.6 1.9E-11 6.4E-16 104.2 0.0 57 20-76 12-68 (89)
14 2din_A Cell division cycle 5-l 99.0 5.2E-10 1.8E-14 89.7 8.1 54 22-76 7-60 (66)
15 1irz_A ARR10-B; helix-turn-hel 99.0 3.7E-10 1.3E-14 93.0 7.3 55 21-75 4-63 (64)
16 2dim_A Cell division cycle 5-l 99.0 4.4E-10 1.5E-14 91.0 5.7 48 22-69 7-55 (70)
17 1w0t_A Telomeric repeat bindin 99.0 7.9E-10 2.7E-14 85.4 6.8 46 24-69 2-50 (53)
18 2cjj_A Radialis; plant develop 99.0 1.1E-09 3.8E-14 95.1 8.4 54 23-76 7-64 (93)
19 1ity_A TRF1; helix-turn-helix, 99.0 9.6E-10 3.3E-14 89.0 7.3 50 21-70 7-59 (69)
20 2yqk_A Arginine-glutamic acid 98.9 8.1E-10 2.8E-14 89.1 5.2 42 23-64 8-50 (63)
21 3sjm_A Telomeric repeat-bindin 98.9 2.7E-09 9.1E-14 86.5 7.0 46 23-68 10-58 (64)
22 2k9n_A MYB24; R2R3 domain, DNA 98.8 3.9E-09 1.3E-13 91.4 6.7 53 22-74 51-103 (107)
23 2crg_A Metastasis associated p 98.8 4.5E-09 1.6E-13 86.6 6.7 44 22-65 6-50 (70)
24 3osg_A MYB21; transcription-DN 98.8 6.6E-09 2.2E-13 92.4 6.6 49 21-69 8-56 (126)
25 3osg_A MYB21; transcription-DN 98.8 7.7E-09 2.6E-13 92.0 6.6 50 22-71 60-109 (126)
26 1gv2_A C-MYB, MYB proto-oncoge 98.8 6.3E-09 2.2E-13 89.0 5.1 48 22-69 54-101 (105)
27 1wgx_A KIAA1903 protein; MYB D 98.7 1.4E-08 4.7E-13 85.4 6.6 45 23-67 7-55 (73)
28 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.8E-08 6E-13 83.9 6.7 46 22-68 6-55 (72)
29 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.1E-08 3.6E-13 87.6 5.4 47 23-69 3-50 (105)
30 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.5E-08 5.1E-13 87.7 6.0 46 24-69 1-47 (107)
31 2llk_A Cyclin-D-binding MYB-li 98.7 2E-08 6.9E-13 83.9 6.3 52 14-66 13-64 (73)
32 4a69_C Nuclear receptor corepr 98.6 3.6E-08 1.2E-12 85.4 6.2 44 22-65 41-84 (94)
33 3zqc_A MYB3; transcription-DNA 98.6 1.6E-08 5.6E-13 90.2 4.0 46 24-69 2-48 (131)
34 3zqc_A MYB3; transcription-DNA 98.6 1.7E-08 5.9E-13 90.1 3.8 50 22-71 52-101 (131)
35 1h8a_C AMV V-MYB, MYB transfor 98.6 4.2E-08 1.4E-12 86.9 6.0 49 21-69 24-73 (128)
36 1h8a_C AMV V-MYB, MYB transfor 98.6 2.1E-08 7.2E-13 88.9 3.7 47 22-68 77-123 (128)
37 2ckx_A NGTRF1, telomere bindin 98.5 2.3E-07 7.9E-12 79.1 6.8 47 25-71 1-52 (83)
38 4eef_G F-HB80.4, designed hema 98.4 1.6E-08 5.6E-13 85.5 -1.2 43 24-66 20-66 (74)
39 2juh_A Telomere binding protei 98.4 3.9E-07 1.3E-11 82.8 7.6 54 18-71 11-69 (121)
40 1h89_C C-MYB, MYB proto-oncoge 98.4 1.1E-07 3.9E-12 86.8 3.6 47 22-68 108-154 (159)
41 2aje_A Telomere repeat-binding 98.4 3E-07 1E-11 81.7 6.2 51 19-69 8-63 (105)
42 2roh_A RTBP1, telomere binding 98.4 6.5E-07 2.2E-11 81.5 8.1 52 20-71 27-83 (122)
43 1h89_C C-MYB, MYB proto-oncoge 98.4 2.3E-07 7.8E-12 84.8 4.7 49 21-69 55-104 (159)
44 1x58_A Hypothetical protein 49 98.3 6.8E-07 2.3E-11 73.5 6.0 46 21-66 5-53 (62)
45 1ign_A Protein (RAP1); RAP1,ye 97.9 6.5E-06 2.2E-10 82.5 3.7 50 22-71 6-61 (246)
46 1ofc_X ISWI protein; nuclear p 97.1 0.00053 1.8E-08 70.5 5.8 49 24-72 110-159 (304)
47 2xag_B REST corepressor 1; ami 96.9 0.00013 4.4E-09 78.9 0.0 42 24-65 189-230 (482)
48 3hm5_A DNA methyltransferase 1 96.4 0.0071 2.4E-07 53.0 7.3 51 24-74 30-85 (93)
49 1fex_A TRF2-interacting telome 96.3 0.0051 1.7E-07 49.3 5.3 46 24-69 2-57 (59)
50 4b4c_A Chromodomain-helicase-D 95.4 0.026 8.8E-07 53.1 6.6 52 23-74 6-62 (211)
51 2y9y_A Imitation switch protei 95.2 0.019 6.4E-07 60.7 5.5 48 24-71 123-172 (374)
52 1ug2_A 2610100B20RIK gene prod 95.1 0.05 1.7E-06 48.2 7.2 48 23-70 32-82 (95)
53 1ofc_X ISWI protein; nuclear p 94.4 0.074 2.5E-06 54.8 7.5 54 23-76 211-280 (304)
54 2ebi_A DNA binding protein GT- 94.0 0.098 3.3E-06 43.5 6.1 47 22-68 2-62 (86)
55 4iej_A DNA methyltransferase 1 92.4 0.31 1.1E-05 42.9 6.9 53 24-76 30-87 (93)
56 2lr8_A CAsp8-associated protei 89.1 0.065 2.2E-06 45.2 0.0 43 25-68 15-60 (70)
57 4b4c_A Chromodomain-helicase-D 89.4 0.78 2.7E-05 43.1 7.1 49 24-73 134-197 (211)
58 1ig6_A MRF-2, modulator recogn 86.4 0.69 2.3E-05 40.1 4.4 47 45-98 56-107 (107)
59 2hzd_A Transcriptional enhance 86.0 0.71 2.4E-05 39.9 4.2 46 22-67 4-70 (82)
60 2xb0_X Chromo domain-containin 79.0 3.9 0.00013 41.4 7.2 49 24-72 3-56 (270)
61 1ign_A Protein (RAP1); RAP1,ye 72.9 6.1 0.00021 40.0 6.6 28 45-72 173-200 (246)
62 2xb0_X Chromo domain-containin 71.5 3.9 0.00013 41.5 4.9 27 25-51 169-196 (270)
63 2eqy_A RBP2 like, jumonji, at 58.4 34 0.0012 30.4 7.8 34 45-78 65-102 (122)
64 2cxy_A BAF250B subunit, HBAF25 46.2 55 0.0019 29.1 7.2 32 45-76 74-109 (125)
65 2y9y_A Imitation switch protei 46.2 33 0.0011 36.5 6.7 54 23-76 227-296 (374)
66 2lm1_A Lysine-specific demethy 45.0 66 0.0023 27.5 7.3 45 32-76 47-102 (107)
67 2li6_A SWI/SNF chromatin-remod 39.3 33 0.0011 30.1 4.6 31 45-75 72-102 (116)
68 1kkx_A Transcription regulator 37.2 46 0.0016 29.8 5.3 32 44-75 70-101 (123)
69 2jrz_A Histone demethylase jar 36.4 54 0.0018 28.9 5.5 46 32-77 43-99 (117)
70 2jxj_A Histone demethylase jar 35.5 40 0.0014 28.3 4.4 32 44-75 58-93 (96)
71 1c20_A DEAD ringer protein; DN 31.6 66 0.0023 28.6 5.3 34 44-77 74-112 (128)
72 2o8x_A Probable RNA polymerase 31.3 1.4E+02 0.0048 22.1 6.4 48 25-74 14-61 (70)
73 1fse_A GERE; helix-turn-helix 29.0 1.4E+02 0.0048 22.3 6.2 48 23-73 8-55 (74)
74 2ohd_A Probable molybdenum cof 25.5 35 0.0012 32.4 2.5 27 436-462 46-72 (151)
75 2iih_A Molybdenum cofactor bio 25.1 36 0.0012 32.5 2.5 26 437-462 54-79 (157)
76 2eey_A Molybdopterin biosynthe 25.0 36 0.0012 32.6 2.5 26 437-462 56-81 (162)
77 2rq5_A Protein jumonji; develo 23.5 79 0.0027 28.4 4.3 30 45-74 65-99 (121)
78 2ekn_A Probable molybdenum cof 23.1 40 0.0014 32.3 2.4 27 436-462 55-81 (159)
79 1x3u_A Transcriptional regulat 21.2 1.3E+02 0.0045 23.0 4.7 45 26-73 16-60 (79)
80 3c57_A Two component transcrip 21.1 2.3E+02 0.0078 23.2 6.4 48 25-75 26-73 (95)
81 3mzy_A RNA polymerase sigma-H 20.4 2.2E+02 0.0076 23.7 6.3 34 41-75 122-155 (164)
82 1ekr_A Molybdenum cofactor bio 20.3 42 0.0015 32.1 2.0 25 438-462 57-81 (161)
No 1
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.54 E-value=3.6e-15 Score=125.48 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=55.2
Q ss_pred ccccCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 11 ~~K~RKPytitk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
.+|.+|++.....+..||+||+++||+||++||.+|.+||++||+||..|||.|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 5 SSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred ccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 46888898988999999999999999999999999999999999999999999988763
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.4e-14 Score=117.19 Aligned_cols=54 Identities=37% Similarity=0.684 Sum_probs=49.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC------hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG------RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG------rdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
..++.||+||+++|+++|+.|| .+|.+||++|++||..|||.|+++||.++.+.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999 79999999999999999999999999876543
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=1.5e-13 Score=112.29 Aligned_cols=55 Identities=31% Similarity=0.629 Sum_probs=50.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
...++.||+||+++|++++++||.+|..||.+|++||..||+.|+++||.++.+.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999999999999999999999999998887554
No 4
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.41 E-value=1.1e-13 Score=136.77 Aligned_cols=66 Identities=30% Similarity=0.488 Sum_probs=61.0
Q ss_pred ccccccCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 006139 9 DLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 9 ~~~~K~RKPytitk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k 74 (659)
+.+.+.|+|+.+++...+||+||+++|++||++||++|..||++|||||..||+.|+.+|+.|+..
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTTH
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhhH
Confidence 346688999999999999999999999999999999999999999999999999999999888443
No 5
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.31 E-value=1.7e-12 Score=102.71 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC-CCCHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG-TKKAVQIRSHAQKFFS 70 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YG-rdWKkIAe~Vg-TRT~~QVRSHAQKYF~ 70 (659)
++.||.||+++|++++++|| .+|..||++|+ +||..|||.|+++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 67899999999999999999 69999999999 9999999999999985
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.31 E-value=1.1e-12 Score=140.63 Aligned_cols=65 Identities=31% Similarity=0.531 Sum_probs=58.8
Q ss_pred ccccCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 11 VLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 11 ~~K~RKPytitk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
+...|.|+.+++...+||+|||++|++||++|||+|+.|+++|||||..|||+|+++|+.++...
T Consensus 367 ~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ld 431 (482)
T 2xag_B 367 IEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID 431 (482)
T ss_dssp TGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHH
T ss_pred cccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhChH
Confidence 34567888889999999999999999999999999999999999999999999999998875443
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=4.6e-12 Score=100.42 Aligned_cols=49 Identities=31% Similarity=0.532 Sum_probs=45.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFFS 70 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF~ 70 (659)
..+..||.||+++|++++++|| .+|..||.+|++||..|||.|+++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4577899999999999999999 599999999999999999999998864
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.16 E-value=4e-11 Score=91.78 Aligned_cols=47 Identities=26% Similarity=0.515 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
.++.||.||+++++++++.||. +|..||.+|++||..|||.|+++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998 9999999999999999999999885
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.7e-11 Score=95.37 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=42.7
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHH
Q 006139 19 TITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHA 65 (659)
Q Consensus 19 titk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHA 65 (659)
...+....||+||+++|++||.+||++|.+||.+|++||..||+.|+
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 33456789999999999999999999999999999999999999873
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.12 E-value=1.2e-10 Score=97.26 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=44.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
..++.||.||+.+|++||+.|| .+|.+||.+|++||..||+.|++++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999 58999999999999999999987663
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=8.8e-11 Score=92.42 Aligned_cols=48 Identities=17% Similarity=0.473 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
..++.||.||++++++++++|| .+|..||.+|++||..|||.|+++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 4678999999999999999999 59999999999999999999998774
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.09 E-value=8.3e-11 Score=90.21 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
.++.||.||+++|+++++.||. +|..||.+|++||..|||.|+++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999997 7999999999999999999998874
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-11 Score=104.23 Aligned_cols=57 Identities=23% Similarity=0.348 Sum_probs=51.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 006139 20 ITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 20 itk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
....++.||+||+++|+++++.||.+|..||.+|++||..||+.|+..|+.++....
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~~ 68 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDE 68 (89)
Confidence 345688999999999999999999999999999999999999999999987765543
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=5.2e-10 Score=89.69 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
..++.||.||+++++++++.||.+|..||.++ .||..|||.|+++|+.+..+..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCC
Confidence 46789999999999999999999999999955 4999999999999988876654
No 15
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.04 E-value=3.7e-10 Score=92.96 Aligned_cols=55 Identities=35% Similarity=0.469 Sum_probs=49.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChh---hHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGRA---WQRIEEHIG--TKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGrd---WKkIAe~Vg--TRT~~QVRSHAQKYF~KL~k~ 75 (659)
.+.+.+||+|.|++|++|++.+|.+ |++|-++++ +.|..||+||.|||+.+++|.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999999999964 899999865 679999999999999999763
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.4e-10 Score=91.03 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
..++.||.||++++++++++|| .+|..||.+|++||..|||.|+.+|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 4678999999999999999999 69999999999999999999988774
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.98 E-value=7.9e-10 Score=85.37 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC--CCCHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFF 69 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YG-rdWKkIAe~Vg--TRT~~QVRSHAQKYF 69 (659)
++.||+||+++++++++.|| .+|..|+.+++ +||..||+.++.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999 59999999999 999999999988774
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.98 E-value=1.1e-09 Score=95.13 Aligned_cols=54 Identities=15% Similarity=0.448 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHh
Q 006139 23 QRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
..+.||.||+++|++||..|| .+|.+||.+|++||..||+.|+++++.++..+.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999997 479999999999999999999999988887654
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.97 E-value=9.6e-10 Score=88.97 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=45.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhC--CCCHHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYG-RAWQRIEEHIG--TKKAVQIRSHAQKFFS 70 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YG-rdWKkIAe~Vg--TRT~~QVRSHAQKYF~ 70 (659)
.+.++.||.||++++++++++|| .+|..|+.+++ +||..|||.++.+|+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999 59999999999 9999999999887743
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.1e-10 Score=89.13 Aligned_cols=42 Identities=29% Similarity=0.606 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHH-HhCCCCHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSH 64 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGrdWKkIAe-~VgTRT~~QVRSH 64 (659)
....||+||+++|++||.+||++|.+|+. +|++||..||..+
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f 50 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF 50 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH
Confidence 45789999999999999999999999998 5999999999866
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.89 E-value=2.7e-09 Score=86.50 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhC--CCCHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIG--TKKAVQIRSHAQKF 68 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~Vg--TRT~~QVRSHAQKY 68 (659)
.+..||+||++++++++++||. +|..|+++++ +||..|||.++..|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999995 9999999876 99999999998765
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.84 E-value=3.9e-09 Score=91.35 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=48.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k 74 (659)
..++.||+||++++++++..||..|..||.+|++||..||+.|+..+..++.+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 35789999999999999999999999999999999999999999887766544
No 23
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.84 E-value=4.5e-09 Score=86.57 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHH-HhCCCCHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEE-HIGTKKAVQIRSHA 65 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe-~VgTRT~~QVRSHA 65 (659)
.....||+||+++|++||.+||++|..|+. +|++||..||..+.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 567899999999999999999999999999 69999999999883
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.79 E-value=6.6e-09 Score=92.38 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=45.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
...++.||+||+++++++++.||.+|..||++|++||..|||.++.+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 4467899999999999999999999999999999999999999998875
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.77 E-value=7.7e-09 Score=91.95 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~K 71 (659)
..++.||+||+++++++++.||..|..||.+|++||..||+.|+..+..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999997665443
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.75 E-value=6.3e-09 Score=89.03 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
..++.||+||+++++++++.||..|..||.+|++||..||+.|+..+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999987654
No 27
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=1.4e-08 Score=85.40 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHHHhCCCCHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQK 67 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr----dWKkIAe~VgTRT~~QVRSHAQK 67 (659)
....||.+|+++|++||..|++ +|.+||++||+||+.||+.|++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME 55 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4568999999999999999996 69999999999999999999653
No 28
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.72 E-value=1.8e-08 Score=83.89 Aligned_cols=46 Identities=15% Similarity=0.507 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----hhhHHHHHHhCCCCHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYG----RAWQRIEEHIGTKKAVQIRSHAQKF 68 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YG----rdWKkIAe~VgTRT~~QVRSHAQKY 68 (659)
.....||.||+++|++||.+|| .+|.+||++| .||..||+.|++++
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 3466899999999999999998 4799999999 59999999997766
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.71 E-value=1.1e-08 Score=87.63 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
.++.||+||+++++++++.||. +|..||.+|++||..||+.|+++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999997 7999999999999999999988773
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.70 E-value=1.5e-08 Score=87.66 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
++.||.||+++++++++.||. +|..||.+|++||..|||.++.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 368999999999999999996 9999999999999999999988774
No 31
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.70 E-value=2e-08 Score=83.92 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=43.4
Q ss_pred cCCCcccccCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHH
Q 006139 14 TRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQ 66 (659)
Q Consensus 14 ~RKPytitk~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQ 66 (659)
..+-+.....++.||+||++++++++++||..|..||.++ +||..||+.++.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3444555668899999999999999999999999999999 999999999975
No 32
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.63 E-value=3.6e-08 Score=85.37 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=41.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHA 65 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHA 65 (659)
+....||+|||++|+++|..||++|.+|+++|++||..||.-|.
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999883
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.62 E-value=1.6e-08 Score=90.22 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-hhhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYG-RAWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YG-rdWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
+++||.||+++++++++.|| .+|..||.+|++||..|||.|+++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 57899999999999999999 58999999999999999999998885
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.61 E-value=1.7e-08 Score=90.07 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=45.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~K 71 (659)
..++.||.||++++++++..||..|..||.+|++||..||+.|+..++.+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999997766443
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.60 E-value=4.2e-08 Score=86.94 Aligned_cols=49 Identities=27% Similarity=0.565 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
...++.||+||+++++++++.||. +|..||.+|++||..||+.|+.+|+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 346789999999999999999996 7999999999999999999988764
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.59 E-value=2.1e-08 Score=88.86 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKY 68 (659)
..++.||+||+++++++++.||.+|..||.+|++||..||+.|+..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999997654
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.47 E-value=2.3e-07 Score=79.11 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHHH----hCCCCHHHHHHHHHHHHHH
Q 006139 25 ERWTEEEHNRFLEALKLYGR-AWQRIEEH----IGTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 25 ~~WTeEEHelFLEgLe~YGr-dWKkIAe~----VgTRT~~QVRSHAQKYF~K 71 (659)
.+||.||.+.+++|+++||. +|+.|+.. +.+||.+||+.++.+++.+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999998 99999995 7899999999998887543
No 38
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.43 E-value=1.6e-08 Score=85.49 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCh----hhHHHHHHhCCCCHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR----AWQRIEEHIGTKKAVQIRSHAQ 66 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr----dWKkIAe~VgTRT~~QVRSHAQ 66 (659)
...||.+|.++|..||..|++ +|.+||+.||+||+.||+.|+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999997 6999999999999999999987
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.43 E-value=3.9e-07 Score=82.85 Aligned_cols=54 Identities=13% Similarity=0.341 Sum_probs=47.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 006139 18 YTITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 18 ytitk~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF~K 71 (659)
....+.+++||.||.+.+++|+++||. .|..|+.+. ..||.+||+.++..+..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 455678899999999999999999998 999999975 799999999998877543
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.40 E-value=1.1e-07 Score=86.81 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKF 68 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKY 68 (659)
..++.||+||+++++++++.||..|..||.+|++||..||+.|+..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999997654
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.40 E-value=3e-07 Score=81.66 Aligned_cols=51 Identities=12% Similarity=0.321 Sum_probs=44.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHH
Q 006139 19 TITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFF 69 (659)
Q Consensus 19 titk~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF 69 (659)
...+.+.+||.||.+.+++|+++||. .|+.|+... ..||.+||+.++.+++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999998 999999954 7999999999977664
No 42
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.39 E-value=6.5e-07 Score=81.45 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 006139 20 ITKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHI----GTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 20 itk~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~V----gTRT~~QVRSHAQKYF~K 71 (659)
..+.++.||.||.+.+++|+++||. .|..|+.+. ..||.+||+.++.+++.+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3567889999999999999999998 999999964 799999999998877443
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.37 E-value=2.3e-07 Score=84.80 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=45.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF 69 (659)
...++.||.||+++++++++.||. +|..||.++++||..||+.++.+|+
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 346789999999999999999996 7999999999999999999988774
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.33 E-value=6.8e-07 Score=73.45 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=41.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhChhhHHHHH---HhCCCCHHHHHHHHH
Q 006139 21 TKQRERWTEEEHNRFLEALKLYGRAWQRIEE---HIGTKKAVQIRSHAQ 66 (659)
Q Consensus 21 tk~r~~WTeEEHelFLEgLe~YGrdWKkIAe---~VgTRT~~QVRSHAQ 66 (659)
+.++..||+||.+.+++|+++||+.|+.|+. |+..||.+.|+..+.
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHH
Confidence 4578899999999999999999999999994 788999999998744
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.86 E-value=6.5e-06 Score=82.47 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=44.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhChh------hHHHHHHhCCCCHHHHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGRA------WQRIEEHIGTKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGrd------WKkIAe~VgTRT~~QVRSHAQKYF~K 71 (659)
..+..||+||+++.|+.+++||.. |..||.++++||..|||.|+..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999874 99999999999999999999888533
No 46
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.07 E-value=0.00053 Score=70.47 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr-dWKkIAe~VgTRT~~QVRSHAQKYF~KL 72 (659)
-+.||..+-..|+.|+.+||+ +|..||..|++||..+|+-|++-|+.+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 347999999999999999999 8999999999999999999998887665
No 47
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.94 E-value=0.00013 Score=78.89 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHA 65 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHA 65 (659)
...||++|+.+|.+||..||++|.+|+.+|++||..+|..|+
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 458999999999999999999999999999999999998773
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.43 E-value=0.0071 Score=53.05 Aligned_cols=51 Identities=12% Similarity=0.344 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHHh-----CCCCHHHHHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHI-----GTKKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGrdWKkIAe~V-----gTRT~~QVRSHAQKYF~KL~k 74 (659)
...||.||.+.+++..+.||..|-.|+... +.||..+|+.+.-..-.+|.+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999976 579999999995444444443
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.32 E-value=0.0051 Score=49.33 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ch-hhHHHHH-HhCCCCHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLY--------GR-AWQRIEE-HIGTKKAVQIRSHAQKFF 69 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~Y--------Gr-dWKkIAe-~VgTRT~~QVRSHAQKYF 69 (659)
+..+|+||+..+++-|..| |. -|+.|++ .+..+|..++|.|+-|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 53 7999999 799999999999987764
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.37 E-value=0.026 Score=53.13 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--h-hhHHHHHH--hCCCCHHHHHHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYG--R-AWQRIEEH--IGTKKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YG--r-dWKkIAe~--VgTRT~~QVRSHAQKYF~KL~k 74 (659)
....||+.|-..|+.|+.+|| + +|..|++. +..||...|+.+++-|.....+
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999 4 79999985 5689999999999987766544
No 51
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.18 E-value=0.019 Score=60.71 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEHIG-TKKAVQIRSHAQKFFSK 71 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr-dWKkIAe~Vg-TRT~~QVRSHAQKYF~K 71 (659)
-+.||..+=..|+.|+++||| +-..||..|+ +||..+|+-|++-|+.+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999 7999999998 99999999999877665
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.14 E-value=0.05 Score=48.17 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh---hhHHHHHHhCCCCHHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQKFFS 70 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr---dWKkIAe~VgTRT~~QVRSHAQKYF~ 70 (659)
.-..||.||++-.|.+.++-|. .|..||..+|.|++.||+.+.|....
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3458999999999999999997 79999999999999999999776533
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.44 E-value=0.074 Score=54.80 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHH------------HHhCCCCHHHHHHHHHHHHHHHHHHh
Q 006139 23 QRERWTEEEHNRFLEALKLYGR----AWQRIE------------EHIGTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr----dWKkIA------------e~VgTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
.+..||++|++.||-+|-+||. .|.+|- -||.+||+.+|..|++-...-|.|+.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE~ 280 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIEREN 280 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999997 699996 27889999999999997777777764
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.99 E-value=0.098 Score=43.53 Aligned_cols=47 Identities=13% Similarity=0.338 Sum_probs=37.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh----------hhHHHHHHhC----CCCHHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGR----------AWQRIEEHIG----TKKAVQIRSHAQKF 68 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGr----------dWKkIAe~Vg----TRT~~QVRSHAQKY 68 (659)
+....||++|-.+||++...... .|..||+.+. .||+.||+.-+...
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35678999999999999975321 6999999654 79999999985543
No 55
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.35 E-value=0.31 Score=42.93 Aligned_cols=53 Identities=11% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhChhhHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHHh
Q 006139 24 RERWTEEEHNRFLEALKLYGRAWQRIEEHI-----GTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGrdWKkIAe~V-----gTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
...||.||-..+++..+.|+-.|--|+... +.||..+++.+.=..-.+|.+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999843 37999999999655555555443
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=89.15 E-value=0.065 Score=45.24 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCh---hhHHHHHHhCCCCHHHHHHHHHHH
Q 006139 25 ERWTEEEHNRFLEALKLYGR---AWQRIEEHIGTKKAVQIRSHAQKF 68 (659)
Q Consensus 25 ~~WTeEEHelFLEgLe~YGr---dWKkIAe~VgTRT~~QVRSHAQKY 68 (659)
..||.||++-.|...++-|. .|..||.-+ .||+.||..+.|..
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 47999999999999999997 899999988 79999999997654
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.36 E-value=0.78 Score=43.07 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCh-hhHHHHHH--------------hCCCCHHHHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR-AWQRIEEH--------------IGTKKAVQIRSHAQKFFSKLE 73 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr-dWKkIAe~--------------VgTRT~~QVRSHAQKYF~KL~ 73 (659)
...||.+|+..+|.|+-+||- .|..|-.- ..++++..+..++. |++++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 456999999999999999996 89999661 12456778888887 444443
No 58
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=86.40 E-value=0.69 Score=40.10 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=34.9
Q ss_pred hhHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHhhhcCCCCCccccccCCCCCCCC
Q 006139 45 AWQRIEEHIG-----TKKAVQIRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKR 98 (659)
Q Consensus 45 dWKkIAe~Vg-----TRT~~QVRSHAQKYF~KL~k~~~~~g~~~g~~~~I~iPpPRPKR 98 (659)
.|+.|++.+| +....+++.|++||+...+..-.. ..+.+||++.|+|
T Consensus 56 ~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~-------~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 56 QWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKG-------EEDKPLPPIKPRK 107 (107)
T ss_dssp THHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHH-------HTSSSSCTTCSCC
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCCCCCCC
Confidence 6999999776 234579999999998877774321 2356789888875
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.02 E-value=0.71 Score=39.93 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=35.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCh----hh------------HHHHHHhC-----CCCHHHHHHHHHH
Q 006139 22 KQRERWTEEEHNRFLEALKLYGR----AW------------QRIEEHIG-----TKKAVQIRSHAQK 67 (659)
Q Consensus 22 k~r~~WTeEEHelFLEgLe~YGr----dW------------KkIAe~Vg-----TRT~~QVRSHAQK 67 (659)
...+.|.++=...|++||+.|.. .+ .-|++||- .||..||-||-|-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQv 70 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 70 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHH
Confidence 35678999999999999999863 11 24666653 7999999999873
No 60
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=79.05 E-value=3.9 Score=41.45 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCh---hhHHHHH--HhCCCCHHHHHHHHHHHHHHH
Q 006139 24 RERWTEEEHNRFLEALKLYGR---AWQRIEE--HIGTKKAVQIRSHAQKFFSKL 72 (659)
Q Consensus 24 r~~WTeEEHelFLEgLe~YGr---dWKkIAe--~VgTRT~~QVRSHAQKYF~KL 72 (659)
.+.||+.|-++|+++|.+||. +|..|.+ -+..|+...|+.-++-.....
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 457999999999999999994 7999977 377899999888776555443
No 61
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=72.91 E-value=6.1 Score=40.01 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=25.5
Q ss_pred hhHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 006139 45 AWQRIEEHIGTKKAVQIRSHAQKFFSKL 72 (659)
Q Consensus 45 dWKkIAe~VgTRT~~QVRSHAQKYF~KL 72 (659)
-|+.|+++.+.+|...+|.++.||..+.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999998887665
No 62
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=71.46 E-value=3.9 Score=41.48 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHhCh-hhHHHHH
Q 006139 25 ERWTEEEHNRFLEALKLYGR-AWQRIEE 51 (659)
Q Consensus 25 ~~WTeEEHelFLEgLe~YGr-dWKkIAe 51 (659)
-.|+.+|+..+|.|+-+||- .|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 45999999999999999998 8999976
No 63
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.35 E-value=34 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.8
Q ss_pred hhHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHhhh
Q 006139 45 AWQRIEEHIGTK----KAVQIRSHAQKFFSKLEKEALS 78 (659)
Q Consensus 45 dWKkIAe~VgTR----T~~QVRSHAQKYF~KL~k~~~~ 78 (659)
.|+.|++.+|-. ...++|.|++||+...+.....
T Consensus 65 ~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~ 102 (122)
T 2eqy_A 65 KWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSG 102 (122)
T ss_dssp THHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 799999976632 2469999999999998886543
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=46.20 E-value=55 Score=29.06 Aligned_cols=32 Identities=9% Similarity=0.363 Sum_probs=26.2
Q ss_pred hhHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHh
Q 006139 45 AWQRIEEHIGTKK----AVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 45 dWKkIAe~VgTRT----~~QVRSHAQKYF~KL~k~~ 76 (659)
.|+.|++.+|--+ ..++|.|++||+...++.-
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6999999776433 5799999999999888864
No 65
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=46.15 E-value=33 Score=36.49 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCh----hhHHHHH------------HhCCCCHHHHHHHHHHHHHHHHHHh
Q 006139 23 QRERWTEEEHNRFLEALKLYGR----AWQRIEE------------HIGTKKAVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGr----dWKkIAe------------~VgTRT~~QVRSHAQKYF~KL~k~~ 76 (659)
.+..||++|+..+|-.|-+||- .|.+|-. |+.+||+..|.-++.-...-|.|+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~ 296 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEF 296 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 3558999999999999999996 4999932 3789999999999986666566654
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.95 E-value=66 Score=27.48 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhC-------hhhHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHh
Q 006139 32 HNRFLEALKLYG-------RAWQRIEEHIGTKK----AVQIRSHAQKFFSKLEKEA 76 (659)
Q Consensus 32 HelFLEgLe~YG-------rdWKkIAe~VgTRT----~~QVRSHAQKYF~KL~k~~ 76 (659)
+.+|..-.+.=| +.|+.|++.+|--. ..++|.|+.||+...+..-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~ 102 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYT 102 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 456665444434 36999999876433 5799999999988887764
No 67
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.29 E-value=33 Score=30.14 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=26.9
Q ss_pred hhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 45 AWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 45 dWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
.|+.|++.+|-....++|.|+.||+...+.-
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 102 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPYERH 102 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHHHHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 6999999887666899999999998887774
No 68
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=37.23 E-value=46 Score=29.84 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=27.8
Q ss_pred hhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 44 RAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 44 rdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
+.|+.|++-+|-....++|.|+.||+...+.-
T Consensus 70 k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~ 101 (123)
T 1kkx_A 70 QQWSMVAQRLQISDYQQLESIYFRILLPYERH 101 (123)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCChHHHHHHHHHHHHHHHHHH
Confidence 37999999887666999999999999988884
No 69
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.36 E-value=54 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhC-------hhhHHHHHHhCCCC----HHHHHHHHHHHHHHHHHHhh
Q 006139 32 HNRFLEALKLYG-------RAWQRIEEHIGTKK----AVQIRSHAQKFFSKLEKEAL 77 (659)
Q Consensus 32 HelFLEgLe~YG-------rdWKkIAe~VgTRT----~~QVRSHAQKYF~KL~k~~~ 77 (659)
+.+|..-.+.=| +.|+.|++.+|-.. ..++|.|++||+...+....
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~ 99 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQS 99 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 455555444333 36999999776432 67999999999888877654
No 70
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.50 E-value=40 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=24.5
Q ss_pred hhhHHHHHHhCCC----CHHHHHHHHHHHHHHHHHH
Q 006139 44 RAWQRIEEHIGTK----KAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 44 rdWKkIAe~VgTR----T~~QVRSHAQKYF~KL~k~ 75 (659)
+.|+.|++.+|-. ...++|.|.+||+...++.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~ 93 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELF 93 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 3799999977632 2679999999998777654
No 71
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.58 E-value=66 Score=28.57 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=26.9
Q ss_pred hhhHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHhh
Q 006139 44 RAWQRIEEHIGT-----KKAVQIRSHAQKFFSKLEKEAL 77 (659)
Q Consensus 44 rdWKkIAe~VgT-----RT~~QVRSHAQKYF~KL~k~~~ 77 (659)
+.|+.|++.+|= -...++|.|+.||+...+....
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 369999997762 2368999999999988887653
No 72
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=31.29 E-value=1.4e+02 Score=22.12 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 006139 25 ERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 25 ~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k 74 (659)
..+++.|.+.|..- -..|..++.||+.+|- +...|+.+-.+-..+|.+
T Consensus 14 ~~L~~~~r~il~l~-~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALLLT-QLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHHHH-HTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHH-HHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 35777777666532 2568899999998875 666676666655555544
No 73
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.04 E-value=1.4e+02 Score=22.34 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 006139 23 QRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLE 73 (659)
Q Consensus 23 ~r~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~ 73 (659)
....+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|-.+-+.|+.
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHC
Confidence 345689999988877 4 678899999998875 67778888776666654
No 74
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=25.55 E-value=35 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006139 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (659)
Q Consensus 436 IaAATVAAAsAWWAahGLLPlcaP~~~ 462 (659)
++.|=+|+-.|==-+.-|+|||-||+.
T Consensus 46 l~vAriAgImaaK~T~~LIPlCHpl~l 72 (151)
T 2ohd_A 46 ITVAKTAGILAAKKTPELIPMCHPIPL 72 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhhHhhhCcccCcCcc
Confidence 345555555555567789999999654
No 75
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=25.09 E-value=36 Score=32.46 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006139 437 AAATVAAATAWWAAHGLLPLCAPFHA 462 (659)
Q Consensus 437 aAATVAAAsAWWAahGLLPlcaP~~~ 462 (659)
+.|-+|+-.|==-+.-|+|||-||+.
T Consensus 54 ~vAriAgImaAK~T~~LIPlCHpl~l 79 (157)
T 2iih_A 54 VVAQLAGILAAKKTADLIPLCHPLPL 79 (157)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCcccCcccc
Confidence 34445555555566789999999654
No 76
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=25.01 E-value=36 Score=32.60 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006139 437 AAATVAAATAWWAAHGLLPLCAPFHA 462 (659)
Q Consensus 437 aAATVAAAsAWWAahGLLPlcaP~~~ 462 (659)
+.|=+|+-.|==-+.-|+|||-||+.
T Consensus 56 ~vAriAgImaAK~T~~LIPlCHpl~l 81 (162)
T 2eey_A 56 AVAQVAGVMAAKKTADLIPMCHPLML 81 (162)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhCcccCcccc
Confidence 33444444444556789999999654
No 77
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=23.47 E-value=79 Score=28.45 Aligned_cols=30 Identities=3% Similarity=0.387 Sum_probs=23.8
Q ss_pred hhHHHHHHhCC-----CCHHHHHHHHHHHHHHHHH
Q 006139 45 AWQRIEEHIGT-----KKAVQIRSHAQKFFSKLEK 74 (659)
Q Consensus 45 dWKkIAe~VgT-----RT~~QVRSHAQKYF~KL~k 74 (659)
.|+.|++-+|- -...++|.|+.||+...+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 69999997652 2357899999999887765
No 78
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=23.06 E-value=40 Score=32.26 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006139 436 IAAATVAAATAWWAAHGLLPLCAPFHA 462 (659)
Q Consensus 436 IaAATVAAAsAWWAahGLLPlcaP~~~ 462 (659)
++.|-+|+-.|==-+.-|+|||-||+.
T Consensus 55 l~vAriAgImaaK~T~~LIPlCHpl~l 81 (159)
T 2ekn_A 55 LATAQIAGILAVKRTPELIPLCHPIPI 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCCCE
T ss_pred HHHHHHHHHHHhhhHHhhCcccCcccc
Confidence 344555555555566789999999654
No 79
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.22 E-value=1.3e+02 Score=22.96 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 006139 26 RWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLE 73 (659)
Q Consensus 26 ~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~ 73 (659)
.+|+.|.+.|.. + ..|...+.||+.+|- +...|+.|-.+-+.||.
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 367778777766 4 678899999998874 66777777666666654
No 80
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.06 E-value=2.3e+02 Score=23.22 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 25 ERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 25 ~~WTeEEHelFLEgLe~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|-.+-+.||...
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 4688999888877 4 788999999998875 7777888877777777543
No 81
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.38 E-value=2.2e+02 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=22.4
Q ss_pred HhChhhHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 006139 41 LYGRAWQRIEEHIGTKKAVQIRSHAQKFFSKLEKE 75 (659)
Q Consensus 41 ~YGrdWKkIAe~VgTRT~~QVRSHAQKYF~KL~k~ 75 (659)
..|...+.||+.+|- +...|+.+-++-..+|.+.
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHH
Confidence 456689999998773 5566666655555555543
No 82
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=20.35 E-value=42 Score=32.10 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCC
Q 006139 438 AATVAAATAWWAAHGLLPLCAPFHA 462 (659)
Q Consensus 438 AATVAAAsAWWAahGLLPlcaP~~~ 462 (659)
.|-+|+-.|==-+.-|+|||-||+.
T Consensus 57 vAriAgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 57 TARIAGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhhhhCcccCcCcc
Confidence 3444444443456689999999654
Done!