BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006140
(659 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLT 109
E I + + P EK R EV+N I+ +I + +V FGS YLP DIDL
Sbjct: 122 EEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLV 181
Query: 110 VLGH------QNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIPV 161
V G +EE L + D+DSV ++ D VP I+K S + V
Sbjct: 182 VFGKWENLPLWTLEEALRKHKV-----ADEDSV-KVLDKATVP----IIKLTDSFTEVKV 231
Query: 162 DISFNQMAGLSA 173
DISFN G+ A
Sbjct: 232 DISFNVQNGVRA 243
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 24/300 (8%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYG---IEVFPFGSVPLKTYLPDGDID 107
E I ++ I+P + + R +V ++ + + I++ FGS+ +LP DID
Sbjct: 82 EEIVDMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFLPTSDID 141
Query: 108 LTVLGHQNVEE--DLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISF 165
+ V V D + LE ++ + +VP VK+V + + +DISF
Sbjct: 142 VLVECDDWVGTPGDWLAETARGLEADNIAESVMVYGGAFVPI-VKMVDRDTR-LSIDISF 199
Query: 166 NQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHY-GLISTYALEMMV 224
N + G+ A ++ KV L + V+L+K + +Y R L + G +S+Y L +++
Sbjct: 200 NTVQGVRAASYIAKVKEEFP---LIEPLVLLLKQFLHY--RNLNQTFTGGLSSYGLVLLL 254
Query: 225 LHRFLDY-YNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYS 283
++ F Y N Y +N + E+ ++E + +E+ +SP +C Y
Sbjct: 255 VNFFQLYALNMRSRTIYDRGVNLGHLLLRFLELY--SLEFNFEEMGISP---GQC--CYI 307
Query: 284 VPITALENTGHEFAI-KHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTL 342
+ GH+ A +L + DPL N++GRS NF I A Q L +TL
Sbjct: 308 PKSASGARYGHKQAQPGNLALEDPLLTANDVGRSTY--NFSSIANAFGQAFQILLVAVTL 365
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLT 109
E I + + P EK R EV++ I+ +I + +V FGS YLP DIDL
Sbjct: 136 EEISDFYEYMSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLV 195
Query: 110 VLGH------QNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIPV 161
V G +EE L + D+DSV ++ D VP I+K S + V
Sbjct: 196 VFGKWENLPLWTLEEALRKHKVA-----DEDSV-KVLDKATVP----IIKLTDSFTEVKV 245
Query: 162 DISFNQMAGLSA 173
DISFN G+ A
Sbjct: 246 DISFNVQNGVRA 257
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 70 RKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKIL 128
R+EV+ I+ ++ + +V FGS YLP DIDL V G E + + + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFG--KWERPPLQLLEQAL 68
Query: 129 ENEDQDSVFEIKDVQYVPAQVKIVKCSVQ--NIPVDISFNQMAGLSALCFLEKVDRLIGK 186
+ IK + A V I+K + Q + VDISFN G+ A F++ + K
Sbjct: 69 RKHNVAEPCSIKVLDK--ATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YMKK 123
Query: 187 DHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFD 236
L ++++K + + + G IS+Y+L +M + FL + D
Sbjct: 124 YSLLPYLILVLKQFL-LQRDLNEVFTGGISSYSLILMAIS-FLQLHPRID 171
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 70 RKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKIL 128
R+EV+ I+ ++ + +V FGS YLP DIDL V G E + + + L
Sbjct: 11 RREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFG--KWERPPLQLLEQAL 68
Query: 129 ENEDQDSVFEIKDVQYVPAQVKIVKCSVQ--NIPVDISFNQMAGLSALCFLEKVDRLIGK 186
+ IK + A V I+K + Q + VDISFN G+ A F++ + K
Sbjct: 69 RKHNVAEPCSIKVLDK--ATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKN---YMKK 123
Query: 187 DHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDYYNTFD 236
L ++++K + + + G IS+Y+L +M + FL + D
Sbjct: 124 YSLLPYLILVLKQFL-LQRDLNEVFTGGISSYSLILMAIS-FLQLHPRID 171
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 39 FSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYI-QRLINGYYGIEVFPFGSVPL 97
+ ++ E+ + + I + I P RK +++ I Q ++ + + ++ FGS
Sbjct: 231 YKVEREVSRIFHQDILHFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFET 290
Query: 98 KTYLPDGDIDLTVLG----HQNVEED---LARFVCKI-LENEDQDSVFEIKDVQYV-PAQ 148
K YLP D+DL ++ ++ ++D LA + K+ L +E VQ + A
Sbjct: 291 KLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKKLKLASE----------VQVITTAN 340
Query: 149 VKIVKC--SVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESR 206
V I+K + + VDISFNQ GL C + V+ + K + VI+IK + R
Sbjct: 341 VPIIKFVDPLTKVHVDISFNQPGGLKT-CLV--VNGFMKKYPALRPLVIIIKH--FLNMR 395
Query: 207 ILGAHY-GLISTYALEMMV-----LHRFLDYYNTFDWDNYCI 242
L + G +S+YA+ +V LH L + + DN+ +
Sbjct: 396 ALNEVFLGGLSSYAIVCLVVSFLQLHPRLSTGSMREEDNFGV 437
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 57/227 (25%)
Query: 66 SEKKRKEVINYIQRLINGYY-----------------GIEVFPFGSVPLKTYLPDGDIDL 108
+ KKR EV+ QRL+ + G +VF FGS L Y P DID
Sbjct: 43 ATKKRVEVLTLFQRLVQEFVYTVSKSKNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDT 102
Query: 109 TVLGHQNVEED--LARFVCKILENEDQDSVFEIKDVQYVP----------AQVKIVKCSV 156
V+ ++V D + F I + + + + + D YVP + + + ++
Sbjct: 103 LVVVPKHVTRDDFFSVFADIIRKRPELEEIACVPDA-YVPIIKLEFDGISIDLIMARLNI 161
Query: 157 QNIPVDISFN-----------QMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYES 205
+P+D++ + + L+ +++ +L+ K +FK ++ IK W +
Sbjct: 162 PRVPLDLTLDDKNLLKNLDEKDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWA-QQR 220
Query: 206 RILGAHYGLISTYALEMMV---------------LHRFLDYYNTFDW 237
+ G +G A M+V + +F + Y ++W
Sbjct: 221 AVYGNIFGFPGGVAWAMLVARICQLYPNAVSSAIVEKFFNIYTKWNW 267
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 12/190 (6%)
Query: 46 WLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYG-IEVFPFGSVPLKTYLPDG 104
WL +E I++ + I P+ K R I+ ++R + + ++ FGS YLP
Sbjct: 175 WLTSE--IKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGS 232
Query: 105 DIDLTVLGHQNVEEDLARF--VCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVD 162
DID V +ED + + L+N+ E+ VP +K ++ Q + +D
Sbjct: 233 DIDCVVNSRNRDKEDRNYIYELARHLKNKGLAIRMEVIVKTRVPI-IKFIEPQSQ-LHID 290
Query: 163 ISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEM 222
+SF + GL A K+ R +D R ++LI + R+ H G + + + +
Sbjct: 291 VSFERTNGLEAA----KLIREWLRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTV-I 345
Query: 223 MVLHRFLDYY 232
+++ FL+ +
Sbjct: 346 CLVYSFLNMH 355
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 52 RIQEILCTIQPAIVSEKKRKEVINYIQRLINGY-YGIEVFPFGSVPLKTYLPDGDIDLTV 110
R+ L + P I K RK ++ +Q I E+ +GS+ + T L D+D+++
Sbjct: 23 RLYSFLEFVSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDVSL 82
Query: 111 LGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQV-KIVKCSVQNIPVDISFNQMA 169
+ E + R + + D D+ F + A+V +I V I VD++F
Sbjct: 83 KSPRVGELEKRRVTMVLRKYLDADADF------HSSARVPRINLVDVSGIGVDLTF---- 132
Query: 170 GLSALCFLEKVDRLIGKDH-LFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVL 225
G C ++ + ++H +F R ++L+K W + E + H+G I++ AL M++
Sbjct: 133 GNDKACRTAELQKAYNEEHPIFGRLLMLLKHWLF-ERDLENVHHGGIASCALSYMLI 188
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 40.0 bits (92), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 103 DGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIP 160
D D+ L + + AR + +L + I+ Q++ A+V IVK V
Sbjct: 240 DADLCLVLKEEPMNQNTEARHILSLLHKHFYTRLSYIERPQFIRAKVPIVKFRDKVSGAE 299
Query: 161 VDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYAL 220
D++ N + G+ L L D + V++IK W + I A G +S+Y +
Sbjct: 300 FDLNVNNVVGIRNTFLLRTYAYL---DKRVRPLVLVIKKWANHHG-INDASRGTLSSYTI 355
Query: 221 EMMVLH 226
+MVLH
Sbjct: 356 VLMVLH 361
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 39.7 bits (91), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPL--------KTYLP 102
++I E+ +Q + KK+ +QR I ++FP + L T
Sbjct: 204 KQILELFQALQQQVCDLKKKDICRAELQREIQ-----QIFPQSRLYLVGSSLNGFGTRSS 258
Query: 103 DGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIP 160
D D+ L + + AR + +L + I+ Q++ A+V IVK V
Sbjct: 259 DADLCLVLKDEPMNQHTEARHILSLLHKHFYTRLSYIERPQFIKAKVPIVKFRDKVSGAE 318
Query: 161 VDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYAL 220
D++ N + G+ L + ++ + V++IK W Y + A G +S+Y L
Sbjct: 319 FDLNVNNVVGIRNTFLLRTYAYI---ENRVRPLVLVIKMWANYHG-LNDASRGTLSSYTL 374
Query: 221 EMMVLH 226
+M LH
Sbjct: 375 VLMALH 380
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 107/283 (37%), Gaps = 61/283 (21%)
Query: 88 EVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVF---------- 137
++FP V L G L G ++ + DL + + N +D+V+
Sbjct: 196 KIFPCAKVFL------GGSSLNGFGSRSSDADLCLVIEEGPVNHRKDAVYVLSLVRKLLY 249
Query: 138 ---EIKDVQYVPAQVKIVKCS--VQNIPVDISFNQMAG------LSALCFLEKVDRLIGK 186
I+ Q + A+V IVK + + D++FN G L F+EK R +
Sbjct: 250 KLSYIEKPQLIRAKVPIVKFRDRISGVEFDLNFNNTVGIRNTFLLRTYAFVEKRVRPL-- 307
Query: 187 DHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRF------------LDYYNT 234
V++IK W + I A G +S+Y L +MVLH DY
Sbjct: 308 -------VLVIKKWANHHC-INDASRGTLSSYTLVLMVLHYLQTLPEPVIPCLQRDYPTC 359
Query: 235 FD--WDNYCISINGPVAISSLPEIVAETVENDGDELL----LSPEFLKKCREIYSVPI-- 286
FD D + + P S +P V+ + GD L K +++ SV +
Sbjct: 360 FDPKMDIHLV----PSGPSDIPAFVSRNQSSLGDLFLGFLRYYATVFKWDKQVISVRMAR 415
Query: 287 TALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCAL 329
T ++ E+ K + + +P N + F I+ A
Sbjct: 416 TLPKSNCKEWKDKFICVEEPFNRTNTARAVHERMKFEAIKAAF 458
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 88 EVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPA 147
E+ FGS+ L + D+DL VL V+ D + E FE K +Q A
Sbjct: 84 ELVAFGSLESGLALKNSDMDLCVLMDSRVQSDT---IALQFYEELIAEGFEGKFLQ--RA 138
Query: 148 QVKIVKCSVQ-------NIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAW 200
++ I+K + + DI FN + L +L D K V+L+K W
Sbjct: 139 RIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKL---DARLKPMVLLVKHW 195
Query: 201 CYYESRILGAHYGLISTYALEMMVLH 226
+I ++G +S+Y +MVL+
Sbjct: 196 A-KRKQINSPYFGTLSSYGYVLMVLY 220
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 36/204 (17%)
Query: 49 AEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDL 108
+E+R++ +L +Q K+ + ++ + G ++F +GS L Y P DID
Sbjct: 44 SEKRVK-VLDELQQITTEFVKKVSLAKHMNEKMANEAGGKIFTYGSYRLGVYGPGSDIDT 102
Query: 109 TVLGHQNVEED--LARFVCKILENEDQDSVFEIKDVQYVP-AQVKIVKCSVQNIPVDISF 165
V+ ++V D + E E E+ D+ VP A V I+K I +D+ F
Sbjct: 103 LVVVPKHVSRDNFFQDLEPMLRERE------EVTDLAAVPDAYVPIIKFKFLGISIDLIF 156
Query: 166 -----------------NQMAGLSALCFL--------EKVDRLIGKDHLFKRSVILIKAW 200
N + G+ C L +++ +L+ +FK ++ IK W
Sbjct: 157 ARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFW 216
Query: 201 CYYESRILGAHYGLISTYALEMMV 224
+ I G A MMV
Sbjct: 217 AQRRA-IYANVVGFPGGVAWAMMV 239
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPL--------KTYLP 102
++I ++ +Q + KK+ +QR I ++FP + L T +
Sbjct: 185 QQILDLFQALQQQVCDIKKKDICRAELQREIQ-----QIFPQSRLYLVGSSLNGFGTRIS 239
Query: 103 DGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKC--SVQNIP 160
D D+ L + + A + +L + I+ +Q++ A+V IVK V
Sbjct: 240 DADLCLVLKEEPMNQHTEATQILGLLHKLFYTRLSYIERLQFIRAKVPIVKFRDKVSGAE 299
Query: 161 VDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYAL 220
D++ N + G+ L L + + V++IK W + I A G +S+Y L
Sbjct: 300 FDLNVNNVVGIRNTFLLRTYAYLESR---VRPLVLVIKKWANHHG-INDASRGTLSSYTL 355
Query: 221 EMMVLH 226
+MVLH
Sbjct: 356 VLMVLH 361
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 65/231 (28%)
Query: 66 SEKKRKEVINYIQRLINGYY-----------------GIEVFPFGSVPLKTYLPDGDIDL 108
+ KKR EV+N +Q + + G ++F FGS L Y P DID
Sbjct: 43 ATKKRVEVLNILQSMTEEFVYKVSIKKNISEGMARDVGGKIFTFGSYRLGVYGPGSDIDT 102
Query: 109 TVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYVP-AQVKIVKCSVQNIPVDISFN 166
V+ ++V D ++L+ E++++ VP A V I+K I +D+ F
Sbjct: 103 LVVVPKHVSRNDFFEVFYELLKGRS-----ELEEIAPVPDAFVPIIKIEFAGISIDLIFA 157
Query: 167 Q-------------------------MAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWC 201
+ + L+ +++ +L+ K +FK ++ IK W
Sbjct: 158 RLDIPRVPRDLTLDDKNLLKNIDEKDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWA 217
Query: 202 YYESRILGAHYGLISTYALEMMV---------------LHRFLDYYNTFDW 237
+ + G +G A M+V + +F Y+ + W
Sbjct: 218 -QQRAVYGNIFGFPGGVAWAMLVARICQLYPNAVSAVIVEKFFHIYSQWAW 267
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 139 IKDVQYVPAQVKIVKCS--VQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVIL 196
+D + A+V I++ I VD++FN G+ L+ ++ D + V++
Sbjct: 1078 FQDFNLIEARVPILRFKDISNGIEVDLNFNNCVGIKNTYLLQLYAQM---DWRTRPLVVI 1134
Query: 197 IKAWCYYESRILGAHYGLISTYALEMMVLH 226
+K W Y I A IS+Y+L +MVLH
Sbjct: 1135 VKLWAQYHD-INDAKRMTISSYSLVLMVLH 1163
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 46 WLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDG 104
WL E I++ + I P+ + R + I+ I+ + + ++ FGS YLP
Sbjct: 178 WLTFE--IKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGS 235
Query: 105 DIDLTV---LGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSV--QNI 159
DID V LG + +L + + ++ E++ V A+V I+K I
Sbjct: 236 DIDCVVTSELGGKESRNNLYSLASHL---KKKNLATEVEVV--AKARVPIIKFVEPHSGI 290
Query: 160 PVDISFNQMAGLSALCFL-EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY 218
+D+SF + G+ A + E +D G R ++LI + R+ H G + +
Sbjct: 291 HIDVSFERTNGIEAAKLIREWLDDTPG-----LRELVLIVKQFLHARRLNNVHTGGLGGF 345
Query: 219 ALEMMVL 225
++ +V
Sbjct: 346 SIICLVF 352
>sp|Q9T058|Y4119_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase
At4g11900 OS=Arabidopsis thaliana GN=At4g11900 PE=2 SV=1
Length = 849
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 86/233 (36%), Gaps = 31/233 (13%)
Query: 382 SEAADLSGDYDSYYNGLLYGQCY--HDYTLPV----------TAQFSPPSSPSQIPSRSA 429
S+ +D S DY Y CY +D LP+ TA + SR
Sbjct: 347 SQGSDDSNDYSGGCKRETYLHCYKRNDEFLPIENMKLATDPTTASVLTSGTFRTCASRCV 406
Query: 430 WDVLCQYVQGKGNLVYQWGTEVF-VPRLPF--CHPYASQVRASTFSTDEGEK---SRGTG 483
D CQ GN W + F + +L H + ++ +S ST K S+G
Sbjct: 407 ADCSCQAYANDGNKCLVWTKDAFNLQQLDANKGHTFFLRLASSNISTANNRKTEHSKGKS 466
Query: 484 TYIPERTRPPPIEINRPVRARNPESLNHVPVSKLRRKIDKAERLPSRDNLESGCSLNV-E 542
+ P + + A L S++RRK + + SR+ LE G + E
Sbjct: 467 IVL------PLVLASLVATAACFVGLYCCISSRIRRKKKQRDEKHSRELLEGGLIDDAGE 520
Query: 543 NGCSLNME------NSCSLILSLEEFPLLPVTKNLPPSATNQQFDQSTDKSTQ 589
N C LN+ NS S L E PV K P+ + + KS+Q
Sbjct: 521 NMCYLNLHDIMVATNSFSRKKKLGEGGFGPVYKGKLPNGMEVAIKRLSKKSSQ 573
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 14/186 (7%)
Query: 51 ERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSV--PLKTYLPDGDID 107
++I E+ T Q I KK++ +QR I + +F GS T DGD+
Sbjct: 158 QQILELFETCQQQISDLKKKELCRTQLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLC 217
Query: 108 LTVLGH----QNVEEDLARFVCKILENEDQDSVF-EIKDVQYVPAQVKIVKC--SVQNIP 160
L V Q ++ AR + ++ + I+ Q + A+V IVK V +
Sbjct: 218 LVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVE 277
Query: 161 VDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYAL 220
D++ N + G+ L L ++ + V++IK W + +I A G +S+Y+L
Sbjct: 278 FDLNVNNIVGIRNTFLLRTYAYL---ENRVRPLVLVIKKWASHH-QINDASRGTLSSYSL 333
Query: 221 EMMVLH 226
+MVLH
Sbjct: 334 VLMVLH 339
>sp|Q8MY86|FGFR1_DUGJA Fibroblast growth factor receptor 1 OS=Dugesia japonica GN=FGFR1
PE=2 SV=1
Length = 854
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 85 YGI---EVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFV-------CKILENEDQD 134
YGI E+F G P LP+ +DL G QN + +LA F C L +E++
Sbjct: 750 YGILLWEIFTLGDSPYSAILPEKVVDLIRKGFQNPKPELANFEIYRLMQHCWSLSSENRP 809
Query: 135 SVFEIKDV 142
+ FEI ++
Sbjct: 810 NFFEIVEI 817
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 139 IKDVQYVPAQVKIVKC--SVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVIL 196
I+ Q + A+V IVK V + D++ N + G+ L L ++ + V++
Sbjct: 254 IERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYL---ENRVRPLVLV 310
Query: 197 IKAWCYYESRILGAHYGLISTYALEMMVLH 226
IK W + I A G +S+Y+L +MVLH
Sbjct: 311 IKKWASHHD-INDASRGTLSSYSLVLMVLH 339
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 19/159 (11%)
Query: 18 LTSPSHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPA--IVSEKKRK--EV 73
L +P T + L PF + E EE +Q + +Q +V E R+ E
Sbjct: 28 LAAPKDTDRELTQKLIETLQPFGVFEE-----EEELQRRILILQKLNNLVKEWIREISES 82
Query: 74 INYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEED--LARFVCKILENE 131
N Q +I G ++F FGS L + DID + ++V+ + F K+ E
Sbjct: 83 RNLPQAVIENVGG-KIFTFGSYRLGVHTKGADIDALCVAPRHVDRNDFFTSFYDKLKLQE 141
Query: 132 DQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDISFNQMA 169
E+KD++ V A V ++K I +DI F ++A
Sbjct: 142 ------EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLA 174
>sp|P33770|HEMF_RHOS4 Coproporphyrinogen-III oxidase, anaerobic 1 OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=hemN PE=3 SV=3
Length = 452
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 111 LGHQNVEEDLARFVCKILE-NEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFNQMA 169
L HQN E LA + K+L D+ ++F V ++ + K++ +V +P DI +++A
Sbjct: 213 LPHQN-RESLAATIDKVLSLRPDRVAIFGYAHVPWMAKRQKLIDETV--LPPDIERHELA 269
Query: 170 GLSALCFLEKVDRLIGKDHL 189
L+A F E IG DH
Sbjct: 270 NLAARLFTEGGFERIGIDHF 289
>sp|B8HMX3|SYI_CYAP4 Isoleucine--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=ileS PE=3 SV=1
Length = 955
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 203 YESRILGAHYGLISTYALEMMVLHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVE 262
+ SR + + L S A VL +L W +I G +A++ P++ VE
Sbjct: 209 HTSRSIYVSFALTSLSATAEAVLKDYLPNLKVAIWTTTPWTIPGNLAVALNPDLTYAVVE 268
Query: 263 NDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKD 309
DG LL++ E +++ V + ++ T A++H PL D
Sbjct: 269 KDGSYLLVANELVERLETTLGVSL-PIKTTIAGQALEHSTYQHPLFD 314
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 18 LTSPSHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPA--IVSEKKRK--EV 73
L +P T + + L P+ + E E+ +Q + ++ +V E R+ E+
Sbjct: 25 LATPKDTDCTLTQKLIETLKPYGVFEE-----EDELQHRILSLGKLNNLVKEWIREISEL 79
Query: 74 INYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEED--LARFVCKILENE 131
N Q +I G ++F FGS L + DID + ++V+ + F K+ + E
Sbjct: 80 KNLPQSVIENVGG-KIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDLFSSFYEKLKQQE 138
Query: 132 DQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDISFNQMA 169
E+KD++ V A V ++K I +DI F ++A
Sbjct: 139 ------EVKDLRSVEEAFVPVIKLCFDGIEIDILFARLA 171
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 139 IKDVQYVPAQVKIVKC--SVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVIL 196
I+ Q + A+V IVK V + D++ N G+ L L ++ + V++
Sbjct: 254 IERPQLIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYL---ENRVRPLVLV 310
Query: 197 IKAWCYYESRILGAHYGLISTYALEMMVLH 226
IK W + I A G +S+Y+L +MVLH
Sbjct: 311 IKKWASHHE-INDASRGTLSSYSLVLMVLH 339
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 139 IKDVQYVPAQVKIVKC--SVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVIL 196
I+ Q + A+V IVK V + D++ N G+ L L ++ + V++
Sbjct: 254 IERPQLIRAKVPIVKFRDKVSCVEFDLNVNNTVGIRNTFLLRTYAYL---ENRVRPLVLV 310
Query: 197 IKAWCYYESRILGAHYGLISTYALEMMVLH 226
IK W + I A G +S+Y+L +MVLH
Sbjct: 311 IKKWASHHD-INDASRGTLSSYSLVLMVLH 339
>sp|Q09221|CPNA2_CAEEL Copine family protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=4
Length = 7705
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 101 LPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNI 159
LP+ D +T++ H+N ++D+ + DQ ++ E ++V+ A VK K V++I
Sbjct: 5361 LPECDQSVTLISHKNQQKDVKDLKATVENTADQVTLLEKREVREQSADVKKKKFEVEDI 5419
>sp|Q6FZ17|RNPA_BARQU Ribonuclease P protein component OS=Bartonella quintana (strain
Toulouse) GN=rnpA PE=3 SV=1
Length = 133
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 460 HPYASQVRASTFSTDEGEKSRGTGTYIPERTRPPPIEINRPVRAR-----NPESLNHVPV 514
HP + RA + GEK RG + ++R I P+ AR ++ N V
Sbjct: 8 HPCRIRKRADFLAVRTGEKRRGPLFLLEVKSREQTAGIKSPLVARVGFTVTRKNGNAVKR 67
Query: 515 SKLRRKIDKAERLPSRDNLESG 536
++++R++ +A R+ D++E+G
Sbjct: 68 NRIKRRLREAVRVGLTDDIEAG 89
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 49/210 (23%)
Query: 72 EVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEED--LARFVCKILE 129
E N Q +I G ++F FGS L + DID + ++V+ F K+
Sbjct: 81 ESKNLPQSVIENVGG-KIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL 139
Query: 130 NEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDISFNQMA------------------- 169
E E+KD++ V A V ++K I +DI F ++A
Sbjct: 140 QE------EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 170 ------GLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYE---SRILGAHYGL------ 214
L+ +++ L+ F+ ++ IK W S ILG G+
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
Query: 215 -----ISTYALEMMVLHRFLDYYNTFDWDN 239
+ A+ ++H+F ++ ++W N
Sbjct: 254 ARTCQLYPNAIASTLVHKFFLVFSKWEWPN 283
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 49/210 (23%)
Query: 72 EVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEED--LARFVCKILE 129
E N Q +I G ++F FGS L + DID + ++V+ F K+
Sbjct: 81 ESKNLPQSVIENVGG-KIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL 139
Query: 130 NEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDISFNQMA------------------- 169
E E+KD++ V A V ++K I +DI F ++A
Sbjct: 140 QE------EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNL 193
Query: 170 ------GLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYE---SRILGAHYGL------ 214
L+ +++ L+ F+ ++ IK W S ILG G+
Sbjct: 194 DIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253
Query: 215 -----ISTYALEMMVLHRFLDYYNTFDWDN 239
+ A+ ++H+F ++ ++W N
Sbjct: 254 ARTCQLYPNAIASTLVHKFFLVFSKWEWPN 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,385,392
Number of Sequences: 539616
Number of extensions: 11911054
Number of successful extensions: 29313
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 29281
Number of HSP's gapped (non-prelim): 71
length of query: 659
length of database: 191,569,459
effective HSP length: 124
effective length of query: 535
effective length of database: 124,657,075
effective search space: 66691535125
effective search space used: 66691535125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)