Query 006140
Match_columns 659
No_of_seqs 289 out of 1326
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 18:56:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2245 Poly(A) polymerase and 100.0 1.1E-44 2.4E-49 390.2 24.2 329 23-404 13-402 (562)
2 PTZ00418 Poly(A) polymerase; P 100.0 9.3E-43 2E-47 388.5 28.7 333 24-405 51-447 (593)
3 COG5186 PAP1 Poly(A) polymeras 100.0 1.1E-36 2.3E-41 317.5 20.7 290 24-358 6-358 (552)
4 KOG1906 DNA polymerase sigma [ 100.0 9.7E-35 2.1E-39 320.9 32.2 251 49-340 63-343 (514)
5 COG5260 TRF4 DNA polymerase si 100.0 6.5E-34 1.4E-38 308.2 23.4 252 44-340 52-344 (482)
6 PF04928 PAP_central: Poly(A) 99.9 1.9E-27 4.1E-32 245.0 8.9 221 24-341 3-242 (254)
7 cd05402 NT_PAP_TUTase Nucleoti 99.8 1.8E-19 4E-24 163.3 12.1 107 69-180 1-113 (114)
8 KOG2277 S-M checkpoint control 99.8 8.5E-19 1.8E-23 200.0 19.6 247 48-340 113-432 (596)
9 TIGR03671 cca_archaeal CCA-add 99.8 9.5E-18 2.1E-22 182.4 23.1 226 53-336 2-251 (408)
10 PRK13300 tRNA CCA-pyrophosphor 99.8 1.8E-17 3.9E-22 182.6 23.1 225 53-336 3-254 (447)
11 COG1746 CCA1 tRNA nucleotidylt 99.8 8.6E-17 1.9E-21 173.2 22.5 230 48-336 2-256 (443)
12 PF09249 tRNA_NucTransf2: tRNA 98.4 1E-06 2.2E-11 80.6 7.8 93 194-336 3-103 (114)
13 PF03828 PAP_assoc: Cid1 famil 98.2 6.3E-07 1.4E-11 72.6 2.0 22 225-246 6-28 (60)
14 cd05400 NT_2-5OAS_ClassI-CCAas 97.8 0.00018 3.9E-09 67.7 10.4 94 66-166 5-109 (143)
15 cd05397 NT_Pol-beta-like Nucle 97.7 4.3E-05 9.4E-10 60.1 4.6 40 72-111 2-42 (49)
16 PF01909 NTP_transf_2: Nucleot 97.6 4.3E-05 9.3E-10 66.2 3.7 43 74-116 1-44 (93)
17 PF10421 OAS1_C: 2'-5'-oligoad 97.6 0.00032 6.8E-09 70.1 10.2 62 170-231 23-85 (190)
18 PF03813 Nrap: Nrap protein; 97.5 0.0055 1.2E-07 75.1 20.4 117 182-338 158-299 (972)
19 smart00572 DZF domain in DSRM 97.5 0.0019 4E-08 67.1 13.7 128 88-224 4-159 (246)
20 cd05403 NT_KNTase_like Nucleot 97.3 0.00064 1.4E-08 58.3 6.6 44 73-116 3-48 (93)
21 KOG1906 DNA polymerase sigma [ 96.9 0.003 6.6E-08 71.7 8.9 187 300-498 244-432 (514)
22 COG1669 Predicted nucleotidylt 96.4 0.0069 1.5E-07 54.5 5.7 46 70-115 7-53 (97)
23 PRK13746 aminoglycoside resist 96.1 0.015 3.3E-07 61.2 7.6 44 75-118 14-60 (262)
24 COG1708 Predicted nucleotidylt 95.7 0.02 4.4E-07 51.7 5.5 27 86-112 26-52 (128)
25 PF14091 DUF4269: Domain of un 95.3 0.33 7.2E-06 47.2 12.7 105 86-198 15-125 (152)
26 KOG2054 Nucleolar RNA-associat 94.8 0.16 3.4E-06 61.4 10.4 117 183-340 303-437 (1121)
27 KOG3793 Transcription factor N 93.2 2.8 6.1E-05 44.3 14.8 145 50-201 42-218 (362)
28 PF03813 Nrap: Nrap protein; 92.4 1.5 3.3E-05 54.2 13.8 129 180-337 675-824 (972)
29 PRK02098 phosphoribosyl-dephos 91.7 0.48 1E-05 48.8 7.1 41 75-116 110-156 (221)
30 PF07528 DZF: DZF domain; Int 91.7 3.7 8E-05 43.1 13.7 125 92-224 2-159 (248)
31 TIGR03135 malonate_mdcG holo-A 90.9 0.65 1.4E-05 47.2 7.0 32 85-116 107-144 (202)
32 PF14792 DNA_pol_B_palm: DNA p 86.2 1.4 3E-05 40.6 5.2 59 73-132 10-74 (112)
33 PF03445 DUF294: Putative nucl 79.7 12 0.00025 35.7 8.9 47 86-132 49-102 (138)
34 cd05401 NT_GlnE_GlnD_like Nucl 76.7 9.1 0.0002 37.2 7.4 30 86-115 55-84 (172)
35 PRK05007 PII uridylyl-transfer 76.1 13 0.00029 45.8 10.1 31 86-116 80-110 (884)
36 cd00141 NT_POLXc Nucleotidyltr 75.9 37 0.0008 36.6 12.4 56 76-132 149-205 (307)
37 COG2844 GlnD UTP:GlnB (protein 75.3 16 0.00034 44.3 10.0 33 86-118 66-98 (867)
38 PRK00227 glnD PII uridylyl-tra 74.9 7.6 0.00016 46.5 7.4 48 68-115 6-56 (693)
39 PF10620 MdcG: Phosphoribosyl- 70.2 12 0.00026 38.4 6.6 45 71-116 102-152 (213)
40 KOG2054 Nucleolar RNA-associat 69.4 23 0.0005 43.8 9.6 59 181-244 812-889 (1121)
41 PRK03059 PII uridylyl-transfer 67.1 36 0.00077 42.0 10.9 29 86-114 61-89 (856)
42 COG2413 Predicted nucleotidylt 67.0 9.8 0.00021 38.9 5.1 43 69-113 22-64 (228)
43 COG1665 Predicted nucleotidylt 62.6 11 0.00023 40.3 4.6 62 46-113 87-148 (315)
44 PRK04374 PII uridylyl-transfer 60.5 36 0.00078 42.0 9.3 28 87-114 73-100 (869)
45 PRK00275 glnD PII uridylyl-tra 59.4 51 0.0011 40.9 10.4 51 64-114 50-106 (895)
46 KOG2534 DNA polymerase IV (fam 59.1 31 0.00068 37.6 7.4 56 76-132 160-218 (353)
47 PRK01293 phosphoribosyl-dephos 59.0 18 0.00038 37.2 5.4 55 74-129 98-158 (207)
48 PRK01759 glnD PII uridylyl-tra 57.9 52 0.0011 40.6 10.1 30 86-115 56-85 (854)
49 TIGR01693 UTase_glnD [Protein- 54.0 54 0.0012 40.3 9.3 30 86-115 43-72 (850)
50 PF03296 Pox_polyA_pol: Poxvir 53.0 16 0.00034 35.3 3.6 47 66-112 24-79 (149)
51 PF09970 DUF2204: Nucleotidyl 51.0 55 0.0012 32.7 7.3 80 86-174 16-100 (181)
52 PF10127 Nuc-transf: Predicted 47.5 12 0.00026 38.8 2.1 43 70-113 2-47 (247)
53 cd05398 NT_ClassII-CCAase Nucl 44.9 1.1E+02 0.0025 29.0 8.2 70 85-167 15-86 (139)
54 PHA02996 poly(A) polymerase la 43.0 72 0.0016 35.9 7.1 72 70-153 148-225 (467)
55 PHA02603 nrdC.11 hypothetical 36.3 19 0.0004 39.5 1.5 24 89-112 6-29 (330)
56 PRK03381 PII uridylyl-transfer 34.7 1E+02 0.0022 37.7 7.5 29 86-114 57-85 (774)
57 PF14907 NTP_transf_5: Unchara 34.4 2.2E+02 0.0049 28.7 9.0 81 75-168 58-146 (249)
58 COG3541 Predicted nucleotidylt 31.8 23 0.0005 37.2 1.3 21 92-112 16-36 (248)
59 smart00483 POLXc DNA polymeras 26.5 1.2E+02 0.0026 33.1 5.7 41 73-114 150-191 (334)
60 PRK05092 PII uridylyl-transfer 26.5 3.2E+02 0.0069 34.2 10.0 28 87-114 106-133 (931)
61 PRK08609 hypothetical protein; 26.2 5.7E+02 0.012 30.2 11.5 28 86-114 175-202 (570)
62 PF12633 Adenyl_cycl_N: Adenyl 25.0 1.2E+02 0.0025 31.3 4.9 29 88-116 99-127 (204)
No 1
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=390.25 Aligned_cols=329 Identities=19% Similarity=0.271 Sum_probs=257.9
Q ss_pred CCCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------
Q 006140 23 HTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY----------------- 85 (659)
Q Consensus 23 ~~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~----------------- 85 (659)
..||+|+|||+++|+.+|+..+..|..++.-..++ +++||..+|.+|++.|++++++|.
T Consensus 13 ~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~f----Es~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~a 88 (562)
T KOG2245|consen 13 KSYGVTQPISTAGPTEADIALTQELIKTLKNEGLF----ESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENA 88 (562)
T ss_pred ccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhc
Confidence 56999999999999999999888776666555444 559999999999999999999883
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEE
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDI 163 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDI 163 (659)
|++|++||||++|++.|++|||.+|++|.++ ++|||..+.++|++.+ +|++++.+ +|.||||||+++||.|||
T Consensus 89 ggkIftfGSYRLGVhg~GADIDtLcV~Prhv~R~DFF~sf~~mL~~~~-----eVteL~~V~dAfVPiikfKf~GI~IDl 163 (562)
T KOG2245|consen 89 GGKIFTFGSYRLGVHGPGADIDTLCVGPRHVSRSDFFTSFYDMLKERP-----EVTELHAVEDAFVPIIKFKFDGIEIDL 163 (562)
T ss_pred CceEEeccceeecccCCCCCcceeeeccccccHHHHHHHHHHHHhcCc-----cccccccccccccceEEEEecCeeeee
Confidence 7999999999999999999999999999987 8899999999999877 68888877 999999999999999999
Q ss_pred eeecccccch--------hHHH-----------------HHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHH
Q 006140 164 SFNQMAGLSA--------LCFL-----------------EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY 218 (659)
Q Consensus 164 Sfnn~~gi~~--------s~~L-----------------~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSY 218 (659)
.|+++..... ..+| ++|+++|++...|+..+|+||+||| +++||++..|+|||.
T Consensus 164 lfArL~l~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAK-rrgVYsN~~GF~GGV 242 (562)
T KOG2245|consen 164 LFARLALPVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAK-RRGVYSNVMGFLGGV 242 (562)
T ss_pred eehhcccccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHH-hcccccccccccchH
Confidence 9998754322 1222 5788999999999999999999999 579999999999999
Q ss_pred HHHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhcc
Q 006140 219 ALEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYS 283 (659)
Q Consensus 219 aL~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~ 283 (659)
+|+||| +.+||..|++|+|++. |.|+.+.+ ++-+ ..+|++
T Consensus 243 ~wA~LVARiCQLYPNA~~s~Lv~kfF~ifs~W~WP~P-------VlL~~ie~----~~L~---~~VWdP----------- 297 (562)
T KOG2245|consen 243 AWAMLVARICQLYPNASPSTLVAKFFRVFSQWNWPNP-------VLLKPIEE----GNLN---LPVWDP----------- 297 (562)
T ss_pred HHHHHHHHHHccCCCcchHHHHHHHHHHHhhccCCCc-------eEeccccc----cccC---ccccCC-----------
Confidence 999999 7899999999999994 44443321 1100 011111
Q ss_pred ccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhh--hhhhHhHHhhhc
Q 006140 284 VPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGM--GLEKFFINTLER 361 (659)
Q Consensus 284 ~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~--~~~~fF~~tl~r 361 (659)
.++. .-+.+.|+|++|+.|++|.+++|+++|+..|.+||.+|..++.+|+.-.. .... |...||..- +.
T Consensus 298 --r~n~-----~DryHlMPIITPAyP~~nsthNVS~ST~~Vi~~Ef~~g~~I~~~i~~~k~-~W~~LFE~~~FF~rY-k~ 368 (562)
T KOG2245|consen 298 --RVNP-----SDRYHLMPIITPAYPQMNSTHNVSRSTLKVITEEFKRGLEICDDIELNKL-DWSDLFELYNFFSRY-KH 368 (562)
T ss_pred --CCCC-----CCcceecccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHhhhhHHHHHH-hh
Confidence 1111 11247999999999999999999999999999999999999999986322 2222 234566543 11
Q ss_pred cCCCCCCCCCCccccccCCCccccccCCCcccccccccccccc
Q 006140 362 NGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCY 404 (659)
Q Consensus 362 ~g~g~rpd~~~~~~~~g~~~~~~~~L~GD~~s~~~nl~Ygq~~ 404 (659)
. .. +.+..+...++..+.|=++|.++-|.-.-..
T Consensus 369 y-l~--------i~~~A~~~ed~l~w~G~vESriR~Lv~klE~ 402 (562)
T KOG2245|consen 369 Y-LQ--------ITASAATEEDLLKWVGWVESRIRQLVLKLER 402 (562)
T ss_pred H-he--------eeeeccChHHHhhhhhHHHHHHHHHHHHHHh
Confidence 1 01 1112233456677888888888877644333
No 2
>PTZ00418 Poly(A) polymerase; Provisional
Probab=100.00 E-value=9.3e-43 Score=388.47 Aligned_cols=333 Identities=17% Similarity=0.231 Sum_probs=255.1
Q ss_pred CCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------C
Q 006140 24 TSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----------------G 86 (659)
Q Consensus 24 ~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----------------~ 86 (659)
.+|+|+|||+++|+++|++.+..|..+++-. .+.|++||.++|++|++.|++++++|. +
T Consensus 51 ~~Gvt~Pis~~~Pt~~d~~~s~~L~~~L~~~----~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~~~~ 126 (593)
T PTZ00418 51 SYGVTDPISLNGPTEEDLKLSNELINLLKSY----NLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEASQIS 126 (593)
T ss_pred ccCCCCCccCCCCChHHHhhhHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHhcCC
Confidence 4999999999999999998887766555444 567789999999999999999998862 5
Q ss_pred CceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEEe
Q 006140 87 IEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDIS 164 (659)
Q Consensus 87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDIS 164 (659)
++|++||||++|++.|+||||++|++|.++ +++||..+.++|++.. +|++++.+ .|+||||||.+.||.|||.
T Consensus 127 g~I~tfGSYrLGV~~pgSDID~L~V~P~~vtredFF~~f~~~L~~~~-----~V~eL~~V~~A~VPiIk~~~~GI~iDL~ 201 (593)
T PTZ00418 127 GKLFTFGSYRLGVVAPGSDIDTLCLAPRHITRESFFSDFYAKLQQDP-----NITKLQPVPDAYTPVIKFVYDGIDIDLL 201 (593)
T ss_pred eEEEEeccccccCCCCCCcccEEEECCCCCCHHHHHHHHHHHHhcCC-----CcceeeccCccccCeEEEEECCEEEeee
Confidence 899999999999999999999999999876 7899999999999865 57888877 9999999999999999999
Q ss_pred eecccccc---------hh-----------------HHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHH
Q 006140 165 FNQMAGLS---------AL-----------------CFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY 218 (659)
Q Consensus 165 fnn~~gi~---------~s-----------------~~L~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSY 218 (659)
|+++.... .. +-.++|+++|++...||.++|+||+||+ +|+||++..|+|||.
T Consensus 202 fa~l~~~~vp~~~~~l~d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWAk-rRGIYsNv~GflGGV 280 (593)
T PTZ00418 202 FANLPLPTIPDCLNSLDDDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWAK-RRGIYSNVLGYLGGV 280 (593)
T ss_pred ecccCCCCCCccccccCchhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HhccccccccccchH
Confidence 98543211 11 1225788899999999999999999999 579999999999999
Q ss_pred HHHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCC-c-cccCHHHHHHHhhh
Q 006140 219 ALEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGD-E-LLLSPEFLKKCREI 281 (659)
Q Consensus 219 aL~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~-~-~Ll~~efl~~~~~~ 281 (659)
+|+||| |.+||.+|++|+|++ ||.|+.+.+. +...|. . -.+++
T Consensus 281 ~wAILvARVCQLyPna~~s~Lv~~FF~iys~W~Wp~-------PV~L~~i~~~----~~~~g~~~~~VWdP--------- 340 (593)
T PTZ00418 281 SWAILTARICQLYPNFAPSQLIHKFFRVYSIWNWKN-------PVLLCKIKEV----PNIPGLMNFKVWDP--------- 340 (593)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCC-------CeEccccccc----ccCCcccCCcccCC---------
Confidence 999999 889999999999998 4444433210 000110 0 01111
Q ss_pred ccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhhhh--hhHhHHhh
Q 006140 282 YSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGL--EKFFINTL 359 (659)
Q Consensus 282 ~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~~~--~~fF~~tl 359 (659)
.. + ..-+.+.|+|+.|+.|.+|++++|+..++..|++||++|.+++..+..-.+......+ ..||..-
T Consensus 341 ----r~----~-~~dr~h~MPIITPayP~mNst~nVt~sT~~vI~~Ef~Ra~~i~~~i~~~~~~~W~~Lfep~~Ff~~Y- 410 (593)
T PTZ00418 341 ----RV----N-PQDRAHLMPIITPAFPSMNSTHNVTYTTKRVITEEFKRAHEIIKYIEKNSENTWTNVLEPLDFFTSY- 410 (593)
T ss_pred ----CC----C-cccccccCCeecCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHcCCcchhhhc-
Confidence 00 0 0112478999999999999999999999999999999999999987531221111111 1344331
Q ss_pred hccCCCCCCCCCCccccccCCCccccccCCCccccccccccccccc
Q 006140 360 ERNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYH 405 (659)
Q Consensus 360 ~r~g~g~rpd~~~~~~~~g~~~~~~~~L~GD~~s~~~nl~Ygq~~~ 405 (659)
+.. .-+.++|....+...+.|=.++.+..|...-...
T Consensus 411 k~y---------l~V~v~a~~~~~~~~w~G~VESRlR~Lv~~LE~~ 447 (593)
T PTZ00418 411 KHF---------LVIQVYATNEHVHNKWEGWIESKIRFLIKKLETL 447 (593)
T ss_pred ceE---------EEEEEEECCHHHhhhhhhHHHHHHHHHHHHhhcc
Confidence 110 0112345555667778999999999888766543
No 3
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=317.49 Aligned_cols=290 Identities=19% Similarity=0.292 Sum_probs=237.2
Q ss_pred CCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------C
Q 006140 24 TSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----------------G 86 (659)
Q Consensus 24 ~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----------------~ 86 (659)
.+|+|+|+|+.+.|.+++..+..+..|+.-+.+++. +.|.+.|.+|++.|+.+++++. |
T Consensus 6 ~~GiTgP~ST~~aTe~En~Ln~~li~eLk~~g~FE~----~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aG 81 (552)
T COG5186 6 KYGITGPLSTREATEEENRLNGELIKELKERGFFED----DKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAG 81 (552)
T ss_pred cccccCCcccccccHHHhhhhHHHHHHHHHcCCcCC----chhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC
Confidence 489999999999999999999999999888888876 9999999999999999998762 6
Q ss_pred CceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEEe
Q 006140 87 IEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDIS 164 (659)
Q Consensus 87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDIS 164 (659)
++|++||||++|++.|+||||.+|+.|.++ +++||..+...|+..+ ++.+|..+ +|.|||||+.+.||.||+.
T Consensus 82 GKIFTyGSYRLGVhgpGsDIDtLvvVPkHVsR~dFFt~f~~~Lrer~-----ei~eva~vpDAfVPIIK~KF~GIsIDLi 156 (552)
T COG5186 82 GKIFTYGSYRLGVHGPGSDIDTLVVVPKHVSRSDFFTHFYEELRERP-----EIEEVAKVPDAFVPIIKLKFQGISIDLI 156 (552)
T ss_pred ceeeeecceeeeccCCCCCcceEEEecccccHHHHHHHHHHHhccCc-----chhhhccCCcccceeEEEEecCccceee
Confidence 899999999999999999999999999987 8899999999999876 45666655 9999999999999999999
Q ss_pred eecccccc--------hhHHH-----------------HHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHH
Q 006140 165 FNQMAGLS--------ALCFL-----------------EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYA 219 (659)
Q Consensus 165 fnn~~gi~--------~s~~L-----------------~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYa 219 (659)
|+++.-.. ...+| ++|.+++++...|+..+++||+||+ ++.+|++..|+.||.|
T Consensus 157 fARLs~P~Vp~~l~Lsd~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WAq-RRavYaN~~GfpGGVA 235 (552)
T COG5186 157 FARLSIPVVPDGLNLSDDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWAQ-RRAVYANPYGFPGGVA 235 (552)
T ss_pred eeeccCCcCCCcccccchhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHHH-hhhhhccccCCcchHH
Confidence 98764322 11222 5788899999999999999999998 5699999999999999
Q ss_pred HHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccc
Q 006140 220 LEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSV 284 (659)
Q Consensus 220 L~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~ 284 (659)
|+||| +.+||+.+++|+|++.+| |..+.+ +|-+.. +|.+.. |
T Consensus 236 wam~VARiCQLYPNA~S~vIv~kFF~ils~WnWPqPvi-------LkPieD----gplqvr---vWnPKv-------Y-- 292 (552)
T COG5186 236 WAMCVARICQLYPNASSFVIVCKFFEILSSWNWPQPVI-------LKPIED----GPLQVR---VWNPKV-------Y-- 292 (552)
T ss_pred HHHHHHHHHhhccCcchHhHHHHHHHHHHhcCCCCCeE-------eeeccC----CCeeEE---eeCCcc-------C--
Confidence 99999 789999999999999554 222211 111000 111110 0
Q ss_pred cccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhh----hhhhHhHHh
Q 006140 285 PITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGM----GLEKFFINT 358 (659)
Q Consensus 285 p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~----~~~~fF~~t 358 (659)
| + -..++|+|++|.+|++..+++++.+|-..|-.+|.+|.+++.+|.. ...+| +..+||.+.
T Consensus 293 p-----s----Dk~HRMPvITPAYPSMCATHNit~STq~vIl~EfvRa~~I~~di~~---n~~~w~~lFek~DFF~RY 358 (552)
T COG5186 293 P-----S----DKYHRMPVITPAYPSMCATHNITNSTQHVILMEFVRAHKILSDIER---NALDWRRLFEKSDFFSRY 358 (552)
T ss_pred c-----c----cccccCccccCCchhhhhhccccchhhhhHHHHHHHHHHhhhhHhh---ccccHHHHHHhhhHHHHH
Confidence 0 0 1247899999999999999999999999999999999999999874 22334 234677654
No 4
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=100.00 E-value=9.7e-35 Score=320.88 Aligned_cols=251 Identities=34% Similarity=0.540 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecC-CcchHHHHHHHHH
Q 006140 49 AEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGH-QNVEEDLARFVCK 126 (659)
Q Consensus 49 ~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p-~~l~e~~~~~v~~ 126 (659)
...++..++++|.||.+|.+.|..+++.++..|+..| .++|++|||+.+|||||+|||||++..+ ...++.....+..
T Consensus 63 l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~~e~~~~~~~l 142 (514)
T KOG1906|consen 63 LRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLNDKEDRAVKLEL 142 (514)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecccccCchhhHHHHHH
Confidence 3445778889999999999999999999999999877 9999999999999999999999999998 4556666666666
Q ss_pred HHHhcCCCCceeEeEEEEe-eceeeEEEeee--CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 006140 127 ILENEDQDSVFEIKDVQYV-PAQVKIVKCSV--QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYY 203 (659)
Q Consensus 127 iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~--~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~ 203 (659)
++..+.....+. |.++ .|+||||||++ ++|.||||||+.+|++++.++..+ +.++|.++.+++++|+|+.
T Consensus 143 ~~~~e~~~~~~~---v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i~~~---~~~~p~~~~lvlvlk~fl~- 215 (514)
T KOG1906|consen 143 ALELEEDNSAFH---VKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFIKDF---LRDHPFLRSLVLVLKQFLY- 215 (514)
T ss_pred HHhhhhccccce---EEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHHHHH---HhcCccchhHHHHHHHHHH-
Confidence 665543333333 4456 99999999996 799999999999999999888774 5578899999999999987
Q ss_pred hhcccCcccCCCcHHHHHHHH------------------------HHHHHHHhc-cCCCCCceEeecCCccccCCcchhh
Q 006140 204 ESRILGAHYGLISTYALEMMV------------------------LHRFLDYYN-TFDWDNYCISINGPVAISSLPEIVA 258 (659)
Q Consensus 204 ~~rI~ga~~GgLsSYaL~lLV------------------------L~~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~ 258 (659)
+++++++++|+++||++++|| |.+||++|| +|++...+|++..+
T Consensus 216 ~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~----------- 284 (514)
T KOG1906|consen 216 ERRLNGVHTGGISSYALELLVLSFLQLHPRSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLG----------- 284 (514)
T ss_pred hhcccccccccchHHHHHHHHHHHHhhcccccCCccchhcccchHHHHHHHHhccccCchhhceeccCC-----------
Confidence 679999999999999999999 789999999 99999998887422
Q ss_pred cccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHH
Q 006140 259 ETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGE 338 (659)
Q Consensus 259 e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~ 338 (659)
++++ .++-.+. +. +. .-+...++||||.+|.||+||+. .++..|+.+|..|+..|..
T Consensus 285 -------g~~~-~~~~~~~----~~------~~---~~~~~~LsieDP~~P~ndigr~s--~~~~~v~~~F~~af~~l~~ 341 (514)
T KOG1906|consen 285 -------GEYV-SKELTGF----FN------NS---LERPGSLSIEDPVDPTNDIGRSS--FNFSQVKGAFAYAFKVLTN 341 (514)
T ss_pred -------cccc-cHHhhhh----hc------cc---ccCCCccccCCCCCccccccccc--ccHHHHHHHHHHHHHHHhh
Confidence 1221 1221110 10 00 01235799999999999999998 5689999999999998866
Q ss_pred Hh
Q 006140 339 IL 340 (659)
Q Consensus 339 il 340 (659)
..
T Consensus 342 ~~ 343 (514)
T KOG1906|consen 342 AV 343 (514)
T ss_pred hh
Confidence 54
No 5
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.5e-34 Score=308.24 Aligned_cols=252 Identities=25% Similarity=0.354 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc-hHHH-
Q 006140 44 ELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDL- 120 (659)
Q Consensus 44 ~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~- 120 (659)
+...++...+.+++.+|.|+.+|.++|..+++.|++++++.| ++.+++|||+.+|+++|.||||+||..+... .+..
T Consensus 52 ~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~et~~ 131 (482)
T COG5260 52 EESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKETRN 131 (482)
T ss_pred hhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCcccccccc
Confidence 334455666889999999999999999999999999999988 8999999999999999999999999986543 2211
Q ss_pred HHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeee--CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHH
Q 006140 121 ARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSV--QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILI 197 (659)
Q Consensus 121 ~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~--~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lI 197 (659)
.-.+...|..... ...+.++ +|||||||+++ .|+.|||+||+..|+.++.++.. ++..+|++|+|+++|
T Consensus 132 ~~~l~~~l~~~~~-----~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~---~~~~~P~lrpLvliI 203 (482)
T COG5260 132 AGSLASHLFKKNL-----AKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRS---YLKEDPRLRPLVLII 203 (482)
T ss_pred HHHHHHHHHHhcc-----CeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHH---HHhcCcccchHHHHH
Confidence 0123333333221 2345566 99999999997 59999999999999999988876 466899999999999
Q ss_pred HHHHHHhhcccCcccCCCcHHHHHHHH---------------------------------HHHHHHHhc-cCCCCCceEe
Q 006140 198 KAWCYYESRILGAHYGLISTYALEMMV---------------------------------LHRFLDYYN-TFDWDNYCIS 243 (659)
Q Consensus 198 K~Wak~~~rI~ga~~GgLsSYaL~lLV---------------------------------L~~FF~yYs-~FDw~~~~IS 243 (659)
|||++ +|++++++.|+|+||++++|| |..||+||+ .|+|...+++
T Consensus 204 Khwl~-~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~~~~~~~~~~~~l~~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~s 282 (482)
T COG5260 204 KHWLK-RRALNDVATGTLSSYTISCMVLSFLQMHPPFLFFDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLS 282 (482)
T ss_pred HHHHH-HHhhcccccCcchhhhhHHHHHHHHHhCCccccccccccchhhccccccccchHHHHHHHHhccccChhheEEE
Confidence 99999 569999999999999999999 678999999 9999999999
Q ss_pred ecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCC-CCCCCccccCChhhH
Q 006140 244 INGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPL-KDNNNLGRSVSKGNF 322 (659)
Q Consensus 244 I~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~-dpsnNlgrsVs~~~~ 322 (659)
+++. +.++.+.+ ++|....+ ...||||||+ ++++++++.. .++
T Consensus 283 i~~g------------------~~~~~K~e-------------~g~~~~~~---p~~LsiqdP~td~n~~~~a~s--~~i 326 (482)
T COG5260 283 INSG------------------DFYLPKYE-------------KGWLKPSK---PNSLSIQDPGTDRNNDISAVS--FNI 326 (482)
T ss_pred ecCC------------------ceeeehhh-------------cccccccC---CCcEeecCCCCCccccccccc--chH
Confidence 9731 12222211 11211111 2689999999 8888888776 578
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006140 323 HRIRCALSYGAQRLGEIL 340 (659)
Q Consensus 323 ~rIr~aF~~aa~~L~~il 340 (659)
..|+.+|.+|.+.|..-+
T Consensus 327 k~i~~~F~~aF~lls~~~ 344 (482)
T COG5260 327 KDIKAAFIRAFELLSNKL 344 (482)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999998887766
No 6
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=99.94 E-value=1.9e-27 Score=245.03 Aligned_cols=221 Identities=17% Similarity=0.249 Sum_probs=136.8
Q ss_pred CCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEecccccCCCCCC
Q 006140 24 TSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPD 103 (659)
Q Consensus 24 ~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~~~~V~~FGS~~tGl~lp~ 103 (659)
.||+|.|||+++|++.|+..+..|....... .+-||+||.++|++|++.|+++++++...
T Consensus 3 ~~Gvt~PIS~~~Pt~~Dl~~s~~L~~~l~~~----~~~es~ee~~~R~~vl~~L~~iv~~wv~~---------------- 62 (254)
T PF04928_consen 3 QYGVTKPISLAPPTEKDLKRSASLEEFLKDY----GLFESEEEEQKREEVLRKLQQIVKEWVKQ---------------- 62 (254)
T ss_dssp GGSTT--S------HHHHHHHHHHHHHHHHC----T-S--HHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred ccCCCCCccCCCCChhhHHhHHHHHHHHHHc----CCCCChHHHhHHHHHHHHHHHHHHHHHHh----------------
Confidence 5899999999999999998777655444333 34678999999999999999999988733
Q ss_pred CcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEEeeceee-EEEeeeCCeeEEEe---eecccccchhHHHHH
Q 006140 104 GDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVK-IVKCSVQNIPVDIS---FNQMAGLSALCFLEK 179 (659)
Q Consensus 104 SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI~ArVP-IIK~~~~gI~VDIS---fnn~~gi~~s~~L~~ 179 (659)
. ..++| .+.+..+.+-.|+. +..++|.+. .++
T Consensus 63 ----------------------------~-------------~~~~p~~l~~~~~~~l~~ld~~s~~sLnG~Rv---~~~ 98 (254)
T PF04928_consen 63 ----------------------------A-------------LPRVPEDLDLLDDDPLRNLDEASVRSLNGVRV---TDY 98 (254)
T ss_dssp ----------------------------S-------------SSSB-TT--TT-GGGGTT--HHHHHHHHHHHH---HHH
T ss_pred ----------------------------h-------------hcCCCcccccCCchhhhCCCHhhccCcccccH---HHH
Confidence 0 01111 11222222222222 223344444 466
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH---------------HHHHHHHhccCCCCCceEee
Q 006140 180 VDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV---------------LHRFLDYYNTFDWDNYCISI 244 (659)
Q Consensus 180 id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV---------------L~~FF~yYs~FDw~~~~ISI 244 (659)
|+++|++...||.++++||+||+ +||||++..|+|||++|+||| |..||.+|++|||++. |.+
T Consensus 99 il~~Vp~~~~Fr~~lR~IK~WAk-~RGIYsn~~GylGGI~waILvArvcql~Pn~~~~~ll~~FF~~ys~W~W~~P-V~l 176 (254)
T PF04928_consen 99 ILRLVPNQETFRTALRFIKLWAK-RRGIYSNVFGYLGGIHWAILVARVCQLYPNASPSTLLSRFFQIYSQWDWPNP-VVL 176 (254)
T ss_dssp HHCTSS-HHHHHHHHHHHHHHHH-HTT-B-CCCTSB-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHCS-TTS--EES
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH-HccccchhhccchHHHHHHHHHHHHHHCccccccchHHHHHHHhcCCCCCCc-eee
Confidence 77789999999999999999999 579999999999999999999 7899999999999993 333
Q ss_pred cCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHH
Q 006140 245 NGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHR 324 (659)
Q Consensus 245 ~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~r 324 (659)
. ...+. ..+ ...+.+. .......+.|+|++|+.|..|++++|++.|++.
T Consensus 177 ~------~~~~~------~~~-~~~w~p~------------------~~~~~~~~~MpIiTP~yP~~Nst~nVt~st~~~ 225 (254)
T PF04928_consen 177 D------PIEDG------PLG-FKVWNPR------------------LYPRDRRHLMPIITPAYPSMNSTYNVTRSTLRI 225 (254)
T ss_dssp S-----------------SSS-CGS--TT------------------T-HHHHC-SS-EE-SSSS--BTTTT--HHHHHH
T ss_pred c------ccccC------ccc-ccCCCCC------------------CCCCCcccceeEccCCCCccccccccCHHHHHH
Confidence 2 11100 000 0011110 001123578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 006140 325 IRCALSYGAQRLGEILT 341 (659)
Q Consensus 325 Ir~aF~~aa~~L~~il~ 341 (659)
|++||++|++.+.+++.
T Consensus 226 i~~Ef~ra~~i~~~~~~ 242 (254)
T PF04928_consen 226 IREEFQRAHEILSEILK 242 (254)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999874
No 7
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.81 E-value=1.8e-19 Score=163.29 Aligned_cols=107 Identities=36% Similarity=0.622 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCc--chHHHHHHHHHHHHhcCCCCceeEeEEEEe
Q 006140 69 KRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN--VEEDLARFVCKILENEDQDSVFEIKDVQYV 145 (659)
Q Consensus 69 ~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~--l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI 145 (659)
.|+++++.|++++++++ ++++++|||+++|+++|+||||+++..+.. ...+++..+.++|++... +.++..|
T Consensus 1 ~r~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~~i 75 (114)
T cd05402 1 KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGE-----VVEVEPI 75 (114)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCC-----ceeeEEe
Confidence 38899999999999987 899999999999999999999999999874 466788999999988652 3455556
Q ss_pred -eceeeEEEeeeC--CeeEEEeeecccccchhHHHHHH
Q 006140 146 -PAQVKIVKCSVQ--NIPVDISFNQMAGLSALCFLEKV 180 (659)
Q Consensus 146 -~ArVPIIK~~~~--gI~VDISfnn~~gi~~s~~L~~i 180 (659)
+||||||||.+. |+.|||||+|..|+.|+.++.++
T Consensus 76 ~~ArVPiik~~~~~~~i~~Dis~~~~~g~~~s~li~~y 113 (114)
T cd05402 76 INARVPIIKFVDKPTGIEVDISFNNLNGIRNTKLLRAY 113 (114)
T ss_pred ccCCCCEEEEEEcCCCeEEEEEcccchHHHHHHHHHHh
Confidence 999999999987 99999999999999999888763
No 8
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=8.5e-19 Score=200.02 Aligned_cols=247 Identities=23% Similarity=0.338 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-C--CceeEecccccCCCCCCCcceEEEecCCc-ch------
Q 006140 48 LAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-G--IEVFPFGSVPLKTYLPDGDIDLTVLGHQN-VE------ 117 (659)
Q Consensus 48 ~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~--~~V~~FGS~~tGl~lp~SDIDl~v~~p~~-l~------ 117 (659)
.++..+.++++..++...+...|......++.++...+ . ..+..|||..+++....+|+|+++..... +.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~gs~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 192 (596)
T KOG2277|consen 113 FLDPQLNELLESFKLPHSDVKTRKLILDKLRALASLLFPDSILSLYLFGSSDLGLGERSSDLDLCVDFTSSFLSFEKIKG 192 (596)
T ss_pred hhchhhhhhhhccCCCccccchHHHHHHHHHHHHHHhcCCCcceeeccCcccccccccccCcceeecccccccccchhhh
Confidence 47778888999999999999999988888888888776 2 33469999999999999999977766543 21
Q ss_pred HHHHHHHHHHHHhcCCCCceeEeEEE-EeeceeeEEEeee--CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHH
Q 006140 118 EDLARFVCKILENEDQDSVFEIKDVQ-YVPAQVKIVKCSV--QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSV 194 (659)
Q Consensus 118 e~~~~~v~~iL~~~~~~~~~~V~~V~-vI~ArVPIIK~~~--~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv 194 (659)
...+..+.++|...... . +..++ +..|+|||||+.+ .++.||++++|..++.|+.+++.+ ...+++|++|+
T Consensus 193 ~~~~~l~~~~~~~~~~~-~--~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~~~~~nS~ll~~~---~~~d~r~~~L~ 266 (596)
T KOG2277|consen 193 LEILKLLAKCLASLLEE-G--VREVQQILSARVPIIKFNDSGSGLECDLSVNNSDAILNSQLLRNY---SEIDPRVRPLV 266 (596)
T ss_pred HHHHHHHHHHHHhcccc-c--cceeeeeeecCCCEEEecCCCCCCceeeeeccchhhhhhHHHHHh---HhcCCCcchHh
Confidence 22345566666654321 1 23333 4599999999965 589999999999999999999885 44578999999
Q ss_pred HHHHHHHHHhhcccCcccCCCc-HHHHHHHH-------------------------------------------------
Q 006140 195 ILIKAWCYYESRILGAHYGLIS-TYALEMMV------------------------------------------------- 224 (659)
Q Consensus 195 ~lIK~Wak~~~rI~ga~~GgLs-SYaL~lLV------------------------------------------------- 224 (659)
++||+||+ +++++++..|+++ +|++.+||
T Consensus 267 ~~vk~wa~-~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (596)
T KOG2277|consen 267 LLVKHWAK-EKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILPPLSKLLPESDSNDKPVVKKKVLCSFLRVFQRNPSNS 345 (596)
T ss_pred HHHHHHHH-hccCCCCCCCceeccccHHHHHHHHHHhcCCcCCCchhhhchhcccccccchhhhhhhccccccccccccc
Confidence 99999998 5699999999998 69999999
Q ss_pred ---------HHHHHHHhc-cCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCc
Q 006140 225 ---------LHRFLDYYN-TFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGH 294 (659)
Q Consensus 225 ---------L~~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~ 294 (659)
+.+||.||+ .|||.+.+|+++....+... +.
T Consensus 346 ~~~~~l~~l~~~f~~yy~~~Fdf~~~~I~~r~~~~l~~~---------------------------------------~~ 386 (596)
T KOG2277|consen 346 QNTGSLGELLLGFFSYYASLFDFRKNAISIRRGRALKRA---------------------------------------KK 386 (596)
T ss_pred cccchHHHHHHHHHHHHhhhcccccceeeeeeccccccc---------------------------------------ch
Confidence 568999999 89999999999743211100 01
Q ss_pred cccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHh
Q 006140 295 EFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEIL 340 (659)
Q Consensus 295 ~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il 340 (659)
.+..+.++|+||++..+|++..++...+..|+.+|......|....
T Consensus 387 ~~~~~~l~i~dp~~~~~n~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 432 (596)
T KOG2277|consen 387 IKSKKFLCIEDPFEVSHNADAGVTLKVLLLIQDEFQESRRVFKDVN 432 (596)
T ss_pred hhhccceeeccccccccCccccchHHHHHHHHHHHHHHHHHhhhhc
Confidence 1224789999999999999999999999999999999999887763
No 9
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.79 E-value=9.5e-18 Score=182.41 Aligned_cols=226 Identities=23% Similarity=0.334 Sum_probs=153.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----CCceeEecccccCCCCC-CCcceEEEecCCcc-hHHHHH---
Q 006140 53 IQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----GIEVFPFGSVPLKTYLP-DGDIDLTVLGHQNV-EEDLAR--- 122 (659)
Q Consensus 53 i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----~~~V~~FGS~~tGl~lp-~SDIDl~v~~p~~l-~e~~~~--- 122 (659)
++++++.|+||++|.+..+.+.+.|...|++.. .++|..|||++.|++++ +|||||+|+.+... ++++-.
T Consensus 2 ~~~vl~~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~~~~~e~l~~~gl 81 (408)
T TIGR03671 2 LEEVLERIKPTEEEREKLKKVADELIARLEEIIEELGVDAEVVLVGSYARGTWLKGDRDIDIFILFPKDTSREELEEYGL 81 (408)
T ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeeEecCCccCCCCceeEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999888888888777654 58999999999999999 89999999998654 334322
Q ss_pred HHHHHHHhcCCCCceeEeEEEEeeceeeEEEeeeCCeeEEEe--eecccccc---h---hHH-HHHHHHHhcCChhhHHH
Q 006140 123 FVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDIS--FNQMAGLS---A---LCF-LEKVDRLIGKDHLFKRS 193 (659)
Q Consensus 123 ~v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~VDIS--fnn~~gi~---~---s~~-L~~id~lv~~~p~fr~L 193 (659)
.+...+.+... +.+...|..|.|+..+.|++|||. +....|-. + +.| .+.+...+ +..++..
T Consensus 82 ~i~~~~~~~~~-------~~~~~yaeHpYv~~~~~G~~VDiVPcy~v~~g~~~~taVDRtp~H~~fv~~rl--~~~~~d~ 152 (408)
T TIGR03671 82 EIGHEVLKRGG-------NYEERYAEHPYVSGEIEGFEVDVVPCYKVESGEEIISAVDRTPFHTRYVLERL--DGKLRDD 152 (408)
T ss_pred HHHHHHHhhCC-------CHhheeccCceEEEEEccEEEEEEeeEEccCcCeeeccccCchHHHHHHHHhh--hhhHHHH
Confidence 22222222111 111248999999999999999995 44333311 1 222 23333333 2348899
Q ss_pred HHHHHHHHHHhhcccC--cccCCCcHHHHHHHHHH--HHHHHhc-cCCCCCceEeecCCccccCCcchhhcccccCCCcc
Q 006140 194 VILIKAWCYYESRILG--AHYGLISTYALEMMVLH--RFLDYYN-TFDWDNYCISINGPVAISSLPEIVAETVENDGDEL 268 (659)
Q Consensus 194 v~lIK~Wak~~~rI~g--a~~GgLsSYaL~lLVL~--~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~ 268 (659)
++++|.|++ ..++|| ...+|||||.++|||++ .|..+-. --+|.. .+.+. + ..++
T Consensus 153 VRLlK~f~k-~igvYGsE~~~~GFSGYl~ELLv~~yG~F~~~l~~a~~wk~-~~~id-~--------------~~~~--- 212 (408)
T TIGR03671 153 VRLLKQFLK-GIGVYGSELKTRGFSGYLCELLVIHYGSFENVLKAASKWKP-GVVID-I--------------EEHG--- 212 (408)
T ss_pred HHHHHHHHH-hCCccchhhccCCccHHHHHHHHHHhCCHHHHHHHHHhcCC-CeEEe-c--------------Cccc---
Confidence 999999999 469997 48899999999999954 2333332 113432 22221 0 0000
Q ss_pred ccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHH
Q 006140 269 LLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRL 336 (659)
Q Consensus 269 Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L 336 (659)
...| ..+|.|+||.|+++|+|+++|..++.+ |..|++.+
T Consensus 213 ------------------------~~~f-~~PlvViDPvDp~RNVAaalS~~~~~~----fv~aar~f 251 (408)
T TIGR03671 213 ------------------------TKKF-DDPLVVIDPVDPKRNVAAALSLENLAR----FILAARMF 251 (408)
T ss_pred ------------------------cccC-CCCEEEeCCCCCcchHHHHcCHHHHHH----HHHHHHHH
Confidence 0123 368999999999999999999988775 55555443
No 10
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.78 E-value=1.8e-17 Score=182.60 Aligned_cols=225 Identities=22% Similarity=0.305 Sum_probs=154.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----CCceeEecccccCCCCC-CCcceEEEecCCcc-hHHHHHH--
Q 006140 53 IQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----GIEVFPFGSVPLKTYLP-DGDIDLTVLGHQNV-EEDLARF-- 123 (659)
Q Consensus 53 i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----~~~V~~FGS~~tGl~lp-~SDIDl~v~~p~~l-~e~~~~~-- 123 (659)
.+++++.|+||++|.+....+.+.|...|++.. .++|+.+||++.|++++ +|||||+|+.+... ++++-+.
T Consensus 3 ~~evl~~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp~~~~~e~L~~~gl 82 (447)
T PRK13300 3 LEEVLERIKPTEEEREKLKKVAEELIERLEEAIKELGLDAEVELVGSTARGTWLSGDRDIDIFVLFPKDTSREELEEKGL 82 (447)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeecCCcccCCCCceeEEEEeCCCCCHHHHHHHHH
Confidence 568899999999999999888888888887764 38999999999999999 79999999998665 3333222
Q ss_pred -HH-HHHHhcCCCCceeEeEEEEeeceeeEEEeeeCCeeEEEe--eecccccc------hhHH-HHHHHHHhcCChhhHH
Q 006140 124 -VC-KILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDIS--FNQMAGLS------ALCF-LEKVDRLIGKDHLFKR 192 (659)
Q Consensus 124 -v~-~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~VDIS--fnn~~gi~------~s~~-L~~id~lv~~~p~fr~ 192 (659)
+. ++++... ..+ .++ .|..|.|+..+.|++|||. +....|-. -+.| .+.+...+ ...++.
T Consensus 83 ~i~~~~~~~~~--~~~---~~~--yaeHpyv~~~~~G~~VDiVPcy~v~~~~~~~saVDRtp~H~~fv~~rl--~~~~~d 153 (447)
T PRK13300 83 EIGKEVAKELL--GDY---EER--YAEHPYVTGEIDGFEVDIVPCYKVESGEEIISAVDRTPFHTKYVKERL--KGKLED 153 (447)
T ss_pred HHHHHHHHhhC--Ccc---eee--eccCceEEEEECCEEEEEEeeEEccCcCcccccccCchHHHHHHHHhh--hhhHHH
Confidence 22 2222211 111 222 5999999999999999996 33333311 1222 23333333 234889
Q ss_pred HHHHHHHHHHHhhcccC--cccCCCcHHHHHHHHHH--HHHHHh---ccCCCCCceEeecCCccccCCcchhhcccccCC
Q 006140 193 SVILIKAWCYYESRILG--AHYGLISTYALEMMVLH--RFLDYY---NTFDWDNYCISINGPVAISSLPEIVAETVENDG 265 (659)
Q Consensus 193 Lv~lIK~Wak~~~rI~g--a~~GgLsSYaL~lLVL~--~FF~yY---s~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g 265 (659)
.++++|.|++. .++|| .+++|||||.++|||++ .|..+- +.|.. ...|.+. .++
T Consensus 154 ~VRLlK~f~k~-~gvYGsE~k~~GFSGYl~ELLv~~yG~F~~~l~~a~~w~~-~~~I~~~-----------------~~~ 214 (447)
T PRK13300 154 EVRLLKQFLKG-IGVYGSELKTRGFSGYLCELLIIHYGSFENVLKAASKWKP-PVKIDLE-----------------KHG 214 (447)
T ss_pred HHHHHHHHHHh-CCccchhhccCCccHHHHHHHHHHhCCHHHHHHHHHhCCC-CceEecc-----------------ccC
Confidence 99999999994 69997 48899999999999954 233222 24421 1122221 000
Q ss_pred CccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHH
Q 006140 266 DELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRL 336 (659)
Q Consensus 266 ~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L 336 (659)
. ...| ..+|.|+||.|+.+|+|.++|..++.+ |..|++.+
T Consensus 215 ~--------------------------~~~f-~~PlvViDPvDp~RNVAaa~S~~~~~~----fv~aar~f 254 (447)
T PRK13300 215 K--------------------------EYKF-DDPLVVIDPVDPNRNVAAALSLENLAT----FILAAREF 254 (447)
T ss_pred c--------------------------cccC-CCCEEEeCCCCCcchHHHHcCHHHHHH----HHHHHHHH
Confidence 0 0022 368999999999999999999988764 66666665
No 11
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=8.6e-17 Score=173.23 Aligned_cols=230 Identities=25% Similarity=0.312 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----CCceeEecccccCCCCC-CCcceEEEecCCcc-hHHH
Q 006140 48 LAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----GIEVFPFGSVPLKTYLP-DGDIDLTVLGHQNV-EEDL 120 (659)
Q Consensus 48 ~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----~~~V~~FGS~~tGl~lp-~SDIDl~v~~p~~l-~e~~ 120 (659)
.+|..++++++.|.||++|.++-+.+.+.|...+.+.. .+.+...||++-|++|+ +.|||++|..|... ++.+
T Consensus 2 ~~~~~l~evl~~i~P~~eE~~~~~~~~e~l~~~~~~~~~e~~~~aev~lVGS~AkgTwL~gd~DIDvFi~Fp~d~~~eel 81 (443)
T COG1746 2 TLEEVLEEVLKRIKPTEEERKKLKEVAEELRERINEIIEELGIDAEVVLVGSYAKGTWLRGDHDIDVFIAFPKDTSEEEL 81 (443)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeecccCcccCCCcceeEEEECCCCCCHHHH
Confidence 35677889999999999999999999888888887764 78999999999999999 69999999999765 3333
Q ss_pred H----HHHHHHHHhcCCCCceeEeEEEEeeceeeEEEeeeCCeeEEEeee--ccc------ccchhHHH-HHHHHHhcCC
Q 006140 121 A----RFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISFN--QMA------GLSALCFL-EKVDRLIGKD 187 (659)
Q Consensus 121 ~----~~v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~VDISfn--n~~------gi~~s~~L-~~id~lv~~~ 187 (659)
- ..-..+|++ . .++ .-.|..|.|...++|++|||.-+ -.. ++.-+-|- +++...+ +
T Consensus 82 ~~~GL~ig~~~l~~-~---~~~-----~~YAeHPYV~g~v~G~eVDvVPCy~v~~~~~~~sAVDRTplHt~yv~e~L--~ 150 (443)
T COG1746 82 EEKGLEIGREVLKR-G---NYE-----ERYAEHPYVTGEVDGYEVDVVPCYKVEDGEKIISAVDRTPLHTRYVEEHL--K 150 (443)
T ss_pred HHHHHHHHHHHhcC-C---chh-----hhhccCCeeEEEEccEEEEEEecccccCcccccccccCcchhHHHHHHHh--c
Confidence 2 223444543 1 111 12899999999999999999643 222 22222222 2222222 2
Q ss_pred hhhHHHHHHHHHHHHHhhcccC--cccCCCcHHHHHHHHHH--HHHHHhccCC-CCCceEeecCCccccCCcchhhcccc
Q 006140 188 HLFKRSVILIKAWCYYESRILG--AHYGLISTYALEMMVLH--RFLDYYNTFD-WDNYCISINGPVAISSLPEIVAETVE 262 (659)
Q Consensus 188 p~fr~Lv~lIK~Wak~~~rI~g--a~~GgLsSYaL~lLVL~--~FF~yYs~FD-w~~~~ISI~GPv~l~sl~~~~~e~p~ 262 (659)
...+.-++|+|.|+| --++|| .+++|||||..+|||++ .|...-..+. |... +-|. +
T Consensus 151 ~~~~deVrLLK~FlK-~iGvYGaE~rt~GFSGYL~ELLII~yGsFe~vl~~a~~wrp~-~~ID-~--------------- 212 (443)
T COG1746 151 GRQKDEVRLLKQFLK-GIGVYGAELRTQGFSGYLCELLIIHYGSFENVLKAASRWRPG-KIID-L--------------- 212 (443)
T ss_pred ccchhHHHHHHHHHh-ccCccceeeeeccchHHHHHHHHhhhccHHHHHHHHhccCCC-eEEe-c---------------
Confidence 234467999999998 468898 58899999999999943 4555554333 6553 2221 0
Q ss_pred cCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHH
Q 006140 263 NDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRL 336 (659)
Q Consensus 263 ~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L 336 (659)
.+ + ....|...+|.|.||.||++|+|.+||..++.+ |..|++.+
T Consensus 213 -~~--------~-----------------~~e~f~d~PliVvDPVDP~RNVAAalSl~~la~----f~~aar~F 256 (443)
T COG1746 213 -EG--------H-----------------KRERFEDEPLIVVDPVDPKRNVAAALSLENLAR----FVHAAREF 256 (443)
T ss_pred -cc--------h-----------------hhhccCCCCeEecCCCCCccchhhhcCHHHHHH----HHHHHHHH
Confidence 00 0 001233468999999999999999999988875 77777765
No 12
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=98.39 E-value=1e-06 Score=80.64 Aligned_cols=93 Identities=22% Similarity=0.403 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcccC--cccCCCcHHHHHHHH-----HHHHHHHhccCCCCCc-eEeecCCccccCCcchhhcccccCC
Q 006140 194 VILIKAWCYYESRILG--AHYGLISTYALEMMV-----LHRFLDYYNTFDWDNY-CISINGPVAISSLPEIVAETVENDG 265 (659)
Q Consensus 194 v~lIK~Wak~~~rI~g--a~~GgLsSYaL~lLV-----L~~FF~yYs~FDw~~~-~ISI~GPv~l~sl~~~~~e~p~~~g 265 (659)
++++|+++| ..++|| .+++|+|||..++|| +...++.-++ |... .|.+. +++
T Consensus 3 VrLLK~FlK-~igvYGse~~~~GFSGYL~ELLii~yGsF~~~l~~a~~--W~~~~~Id~~-----------------~~~ 62 (114)
T PF09249_consen 3 VRLLKQFLK-GIGVYGSELKTRGFSGYLCELLIIHYGSFENVLEAAAK--WKPPVVIDLE-----------------DHG 62 (114)
T ss_dssp HHHHHHHHH-HTT-B-SSTTT-SB-HHHHHHHHHHHSSHHHHHHHHTT----TTEEEETT------------------TT
T ss_pred hHHHHHHHh-cCCCcchhhhcCcchHHHHHHHHHHHCCHHHHHHHHHh--cCCCeEEccC-----------------ccc
Confidence 789999999 469998 478999999999999 4455555554 4432 22221 011
Q ss_pred CccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHH
Q 006140 266 DELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRL 336 (659)
Q Consensus 266 ~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L 336 (659)
...+.| ..+|.|+||.|+++|+|.+||..++.+ |..+++.+
T Consensus 63 -------------------------~~~~~f-~~PlvviDPvDp~RNVAAalS~~~~~~----fv~~ar~f 103 (114)
T PF09249_consen 63 -------------------------EPSKKF-DDPLVVIDPVDPNRNVAAALSLENLAE----FVHAAREF 103 (114)
T ss_dssp -------------------------E--EEE--SS-EEEETTEEEEETTTTS-HHHHHH----HHHHHHHH
T ss_pred -------------------------hhhhhc-CCCeEEcCCCCCCchHhHhcCHHHHHH----HHHHHHHH
Confidence 001123 368999999999999999999988764 67666665
No 13
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=98.20 E-value=6.3e-07 Score=72.57 Aligned_cols=22 Identities=45% Similarity=0.919 Sum_probs=19.5
Q ss_pred HHHHHHHhc-cCCCCCceEeecC
Q 006140 225 LHRFLDYYN-TFDWDNYCISING 246 (659)
Q Consensus 225 L~~FF~yYs-~FDw~~~~ISI~G 246 (659)
|.+||+||+ +|||.+.+|||+.
T Consensus 6 l~~Ff~~Y~~~Fd~~~~~Isi~~ 28 (60)
T PF03828_consen 6 LLGFFEYYGRKFDYENNVISIRN 28 (60)
T ss_dssp HHHHHHHHHHTS-TTTEEEESSS
T ss_pred HHHHHHHhCCcCCCCceEEEecC
Confidence 589999999 9999999999984
No 14
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=97.77 E-value=0.00018 Score=67.69 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCceeEecccccCCCCC-CCcceEEEecCCcc------hHHHHHHHHHHHHhcCCCCc
Q 006140 66 SEKKRKEVINYIQRLINGY--YGIEVFPFGSVPLKTYLP-DGDIDLTVLGHQNV------EEDLARFVCKILENEDQDSV 136 (659)
Q Consensus 66 E~~~R~~Vi~~L~~lI~~~--~~~~V~~FGS~~tGl~lp-~SDIDl~v~~p~~l------~e~~~~~v~~iL~~~~~~~~ 136 (659)
...+.+.|.+.|++-.... ....+++|||++.|++++ .||||++|+.+... ..+++..|.+.|++....
T Consensus 5 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-- 82 (143)
T cd05400 5 AKERYREIREALKESLSELAGRVAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA-- 82 (143)
T ss_pred HHHHHHHHHHHHHHhcccccccccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc--
Confidence 3344555556666554432 147899999999999988 79999999987432 335677788888875421
Q ss_pred eeEeEEEEeeceeeEEEeeeC--CeeEEEeee
Q 006140 137 FEIKDVQYVPAQVKIVKCSVQ--NIPVDISFN 166 (659)
Q Consensus 137 ~~V~~V~vI~ArVPIIK~~~~--gI~VDISfn 166 (659)
-..+..+-|.|.+.+. ++.+||...
T Consensus 83 -----~~~~~~~~~~v~v~~~~~~~~vDvvP~ 109 (143)
T cd05400 83 -----NEEVKAQHRSVTVKFKGQGFHVDVVPA 109 (143)
T ss_pred -----ccccccCceEEEEEEcCCCeEEEEEEE
Confidence 0123455577777765 899999543
No 15
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=97.74 E-value=4.3e-05 Score=60.10 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEe
Q 006140 72 EVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVL 111 (659)
Q Consensus 72 ~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~ 111 (659)
++++.+++.+++.. ..++..|||++.|.+.+.||||+++.
T Consensus 2 ~~l~~i~~~l~~~~~~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 2 ELLDIIKERLKKLVPGYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 45666777777665 67899999999999999999999987
No 16
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=97.64 E-value=4.3e-05 Score=66.15 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc
Q 006140 74 INYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 74 i~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l 116 (659)
++.|.+.+++.+ ...|.+|||++.|.+.|+||||++|+.+...
T Consensus 1 i~~i~~~l~~~~~~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~~ 44 (93)
T PF01909_consen 1 IEEIKEILKELFGVAEVYLFGSYARGDATPDSDIDLLIILDEPE 44 (93)
T ss_dssp HHHHHHHHHHHHTTEEEEEEHHHHHTSSCTTSCEEEEEEESSTS
T ss_pred CHHHHHHHHHHCCCCEEEEECCcccCcCCCCCCEEEEEEeCCcc
Confidence 355666666666 7899999999999999999999999998754
No 17
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=97.64 E-value=0.00032 Score=70.09 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=39.4
Q ss_pred ccchhHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHHHHHHHHH
Q 006140 170 GLSALCFLEKVDRLIGK-DHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFLDY 231 (659)
Q Consensus 170 gi~~s~~L~~id~lv~~-~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLVL~~FF~y 231 (659)
|-.+++|.+.-..++.. ...+|.|+++||+|.+....-.....+..++|+|+||+++.+-.-
T Consensus 23 gefS~cftelQ~~Fvk~rP~klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g 85 (190)
T PF10421_consen 23 GEFSACFTELQRNFVKHRPTKLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQG 85 (190)
T ss_dssp TTTGGGGHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhc
Confidence 44456666665566655 458999999999998743222234567788999999996654443
No 18
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=97.50 E-value=0.0055 Score=75.11 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=82.4
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhhcccC-cccCCCcHHHHHHHH------------------------HHHHHHHhccCC
Q 006140 182 RLIGKDHLFKRSVILIKAWCYYESRILG-AHYGLISTYALEMMV------------------------LHRFLDYYNTFD 236 (659)
Q Consensus 182 ~lv~~~p~fr~Lv~lIK~Wak~~~rI~g-a~~GgLsSYaL~lLV------------------------L~~FF~yYs~FD 236 (659)
+.....|.|+..++|+|.|++ +|++.. ...||++++-|++|+ +-.+++|-+.-|
T Consensus 158 ~~~~~~p~f~dA~iLlkvWl~-QRg~~~~~~~~Gf~~f~~s~lla~Ll~~g~~~~~~~l~~~mSsyQlFr~~l~fLA~~d 236 (972)
T PF03813_consen 158 EASKSSPAFRDACILLKVWLR-QRGFGSGISQGGFGGFEWSMLLAYLLQGGGRNGKKKLSKSMSSYQLFRAVLQFLATTD 236 (972)
T ss_pred HHHhcCHHHHHHHHHHHHHHh-cCCCCcccCCCCcchHHHHHHHHHHHcCCCccCCcccCCCCCHHHHHHHHHHHHhccc
Confidence 345668999999999999997 434443 234999999998887 456788888999
Q ss_pred CCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCcccc
Q 006140 237 WDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRS 316 (659)
Q Consensus 237 w~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrs 316 (659)
|.+.+|.+..-. +. .+.+.... .....++.||-..- |++..
T Consensus 237 ~~~~~l~~~~~~---------------~~------~~~~~~~~-----------------~~~~~vf~D~sg~~-Nl~~~ 277 (972)
T PF03813_consen 237 LSKKPLFFKSSS---------------DS------TESLEEFH-----------------SAFDPVFVDPSGGL-NLLAK 277 (972)
T ss_pred cccCceEEecCC---------------Cc------cchhhhhh-----------------ccCCeEEEeCCCCE-EEEEc
Confidence 988888775210 00 00011000 12456777887655 99999
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q 006140 317 VSKGNFHRIRCALSYGAQRLGE 338 (659)
Q Consensus 317 Vs~~~~~rIr~aF~~aa~~L~~ 338 (659)
++..++..||.+-+.+...|..
T Consensus 278 ms~~s~~~L~~eA~~tl~lL~~ 299 (972)
T PF03813_consen 278 MSPSSYEELQHEAKLTLELLDD 299 (972)
T ss_pred CCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998887776653
No 19
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=97.49 E-value=0.0019 Score=67.08 Aligned_cols=128 Identities=17% Similarity=0.229 Sum_probs=72.0
Q ss_pred ceeEecccccCCCCCC-CcceEEEecCCcch----HHHHHHHHHHHHhcCCCCceeEeEEEEeeceeeEEEeee--C--C
Q 006140 88 EVFPFGSVPLKTYLPD-GDIDLTVLGHQNVE----EDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSV--Q--N 158 (659)
Q Consensus 88 ~V~~FGS~~tGl~lp~-SDIDl~v~~p~~l~----e~~~~~v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~--~--g 158 (659)
.|.-.||++.|+.+.+ -+.|+++++...-- +.+.++|.+-|+..... +. .+.+....+|.+++.+ + .
T Consensus 4 gV~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT~~ll~~v~~~l~e~l~~~~~~---e~-~~~~~~~~~~~~~~~i~ltSp~ 79 (246)
T smart00572 4 GVMRVGSFAKGTLLKGDNVAELVLLCKEKPTSELVARLARKLPEQLKAVTED---EA-LIIVTSTKEPTMEVGILITSPL 79 (246)
T ss_pred ceEEeeeeccCceecCCCceeEEEEecCCCcHHHHHHHHHHHHHHHhhcCcc---cc-eeeeeccCCCceeEEEEEeccc
Confidence 4677999999999986 78899999864322 23334445555543311 11 1222366667776654 2 2
Q ss_pred eeEEEeeecc----cccch-------hH-----HH---HHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHH
Q 006140 159 IPVDISFNQM----AGLSA-------LC-----FL---EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYA 219 (659)
Q Consensus 159 I~VDISfnn~----~gi~~-------s~-----~L---~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYa 219 (659)
+.+++..... ..... .+ -+ +|++.....-..++.++|++|-|+.+ .- .-.-|++|+
T Consensus 80 ~r~~~~~~~~~~~~~~~~p~~~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~~R---~~--~~~pL~~w~ 154 (246)
T smart00572 80 ARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNR---VP--TWQPLSGWP 154 (246)
T ss_pred ccccccccccCcccccCCccccCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHHHh---cc--ccccccccc
Confidence 3333332210 00100 01 01 33333333345789999999999962 21 122399999
Q ss_pred HHHHH
Q 006140 220 LEMMV 224 (659)
Q Consensus 220 L~lLV 224 (659)
+.+++
T Consensus 155 iELl~ 159 (246)
T smart00572 155 LELLV 159 (246)
T ss_pred HHHHH
Confidence 99998
No 20
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=97.30 E-value=0.00064 Score=58.27 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhc--CCceeEecccccCCCCCCCcceEEEecCCcc
Q 006140 73 VINYIQRLINGYY--GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 73 Vi~~L~~lI~~~~--~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l 116 (659)
.++.+.+++++.. -..++.|||++.|-+.++|||||+++.....
T Consensus 3 ~~~~i~~~l~~~~~~i~~i~LfGS~arg~~~~~SDiDl~vi~~~~~ 48 (93)
T cd05403 3 ILEEILEILRELLGGVEKVYLFGSYARGDARPDSDIDLLVIFDDPL 48 (93)
T ss_pred hHHHHHHHHHHHhCCccEEEEEeeeecCCCCCCCCeeEEEEeCCCC
Confidence 3455566666555 4689999999999999999999999987654
No 21
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=96.90 E-value=0.003 Score=71.73 Aligned_cols=187 Identities=24% Similarity=0.273 Sum_probs=132.2
Q ss_pred ceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhhHhHHhhhccCCCCCCCCCCccccccC
Q 006140 300 HLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGLEKFFINTLERNGKGLRPDVQVPIHAFGS 379 (659)
Q Consensus 300 ~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~~~~~fF~~tl~r~g~g~rpd~~~~~~~~g~ 379 (659)
....-.+.....|+| |-.-.|-..-. |.+++.+++..+.++.+.+.++...||.++++|+|.+.++|+..|..-+|.
T Consensus 244 ~~~~s~~~~~~~~~~--vll~~f~e~yG-~~f~~~k~~i~~~~~g~~~~~~~~~~~~~~~~~~~~LsieDP~~P~ndigr 320 (514)
T KOG1906|consen 244 PRSKSGRLAVLKNLG--VLLIKFFELYG-RNFGYDKLGISLSLGGEYVSKELTGFFNNSLERPGSLSIEDPVDPTNDIGR 320 (514)
T ss_pred ccccCCccchhcccc--hHHHHHHHHhc-cccCchhhceeccCCcccccHHhhhhhcccccCCCccccCCCCCccccccc
Confidence 334445666666776 21111111111 356677888888899999999999999999999999999999999999999
Q ss_pred CCccccccCCCcccccccccccccccC-CCCCCCCCCCCCCCCCCCCCCCchhhhcccccCCCCcCC-cCCccccCCCCC
Q 006140 380 GKSEAADLSGDYDSYYNGLLYGQCYHD-YTLPVTAQFSPPSSPSQIPSRSAWDVLCQYVQGKGNLVY-QWGTEVFVPRLP 457 (659)
Q Consensus 380 ~~~~~~~L~GD~~s~~~nl~Ygq~~~~-~s~p~~p~~~~p~~~~q~q~~~pwd~~~~~~~~~~n~~~-~~~~n~~~p~~~ 457 (659)
.......+++.|...+..|.++.+.|. +..+ .... .+-..-.-..++|+.++++...+.+.|+ .++..+..
T Consensus 321 ~s~~~~~v~~~F~~af~~l~~~~~~~~s~~~~-~~~~--~s~lg~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~p~---- 393 (514)
T KOG1906|consen 321 SSFNFSQVKGAFAYAFKVLTNAVFSHGSSSLP-EQAN--KSILGNIIEVSRKDEVRDYRTERDQGFNGKRNMPGPT---- 393 (514)
T ss_pred ccccHHHHHHHHHHHHHHHhhhhcccchhccc-cccc--ccccCCeeeccchhhhhhhhhhhhhccccccCCCCcc----
Confidence 999999999999999999999999997 4454 1111 1122223344558999999888887777 66666331
Q ss_pred ccCCCCcccccccccCCCCCCcCcccccCCCCCCCCCCCCC
Q 006140 458 FCHPYASQVRASTFSTDEGEKSRGTGTYIPERTRPPPIEIN 498 (659)
Q Consensus 458 ~~~~~~~~~~~~~~~~e~~~~~rGTGTY~Pn~~~~~~r~~~ 498 (659)
..+. ..+......+......+|||+|+|.+++.+.....
T Consensus 394 -~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~s~~~~s~ 432 (514)
T KOG1906|consen 394 -DSPT-RGISVNPNETGSGEPSSGTGASIPENSHSPVTDSP 432 (514)
T ss_pred -ccCC-CCcccCccccccccccCCCCcCCcccCCCccccCc
Confidence 1111 11222344455577899999999999998886544
No 22
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=96.37 E-value=0.0069 Score=54.48 Aligned_cols=46 Identities=30% Similarity=0.379 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhcC-CceeEecccccCCCCCCCcceEEEecCCc
Q 006140 70 RKEVINYIQRLINGYYG-IEVFPFGSVPLKTYLPDGDIDLTVLGHQN 115 (659)
Q Consensus 70 R~~Vi~~L~~lI~~~~~-~~V~~FGS~~tGl~lp~SDIDl~v~~p~~ 115 (659)
.+.++..+...+++++| +++-.|||++-|-..|+|||||.|-+...
T Consensus 7 ~~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~ 53 (97)
T COG1669 7 LKKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPG 53 (97)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCC
Confidence 44557777888887884 68999999999999999999999987543
No 23
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=96.12 E-value=0.015 Score=61.18 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCC---ceeEecccccCCCCCCCcceEEEecCCcchH
Q 006140 75 NYIQRLINGYYGI---EVFPFGSVPLKTYLPDGDIDLTVLGHQNVEE 118 (659)
Q Consensus 75 ~~L~~lI~~~~~~---~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e 118 (659)
..+++++++..+. .|+.|||++.|-+-|.||||++|+....+..
T Consensus 14 ~~~~~~l~~~l~~~l~~vyLfGS~~~G~~~p~SDIDllvvv~~~l~~ 60 (262)
T PRK13746 14 SEACAVIERHLEPTLLAIHLYGSAVDGGLKPHSDIDLLVTVAVPLDE 60 (262)
T ss_pred HHHHHHHHHhCcccEEEEEEECCcccCCCCCCCceeEEEEeCCCCCH
Confidence 3445566655643 5899999999999999999999999876533
No 24
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=95.68 E-value=0.02 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=25.8
Q ss_pred CCceeEecccccCCCCCCCcceEEEec
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLG 112 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~ 112 (659)
...|+.|||++.|-+.++||||+++++
T Consensus 26 ~~~v~LfGS~arG~~~~~SDiDv~vv~ 52 (128)
T COG1708 26 DLLIYLFGSYARGDFVKESDIDLLVVS 52 (128)
T ss_pred CeEEEEEccCcccccccCCCeeEEEEc
Confidence 578999999999999999999999997
No 25
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=95.33 E-value=0.33 Score=47.25 Aligned_cols=105 Identities=18% Similarity=0.341 Sum_probs=62.7
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEEe
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDIS 164 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDIS 164 (659)
.......|..+.|+..++|||||+|..++ .+.|...+.+.-.+. ..|.++.- .| .-..=+..|...|..+-|
T Consensus 15 ~~~PiL~GTiPi~Idi~~SDLDIic~~~d--~~~F~~~l~~~f~~~---~~f~~~~~-~i~~~~~~~~~F~~~~~~~Ei- 87 (152)
T PF14091_consen 15 AYDPILVGTIPIGIDIPGSDLDIICEVPD--PEAFEQLLQSLFGQF---EGFTIKEK-TIRGEPSIVANFRYEGFPFEI- 87 (152)
T ss_pred cCCCEEecccccccCCCCCCccEEEEeCC--HHHHHHHHHHHhccC---CCceeeec-eeCCceeEEEEEEECCceEEE-
Confidence 45788899999999999999999999885 234433333333322 23445432 23 222233455668888888
Q ss_pred eecccccchh----HHHHHHHHHhcC-ChhhHHHHHHHH
Q 006140 165 FNQMAGLSAL----CFLEKVDRLIGK-DHLFKRSVILIK 198 (659)
Q Consensus 165 fnn~~gi~~s----~~L~~id~lv~~-~p~fr~Lv~lIK 198 (659)
|.+...+..- .++-+ .+++.. .+.||.-++-+|
T Consensus 88 F~Q~~Pv~~QnayrHm~iE-~rLL~~~g~~~r~~Ii~LK 125 (152)
T PF14091_consen 88 FGQPIPVEEQNAYRHMLIE-HRLLELHGPSFREEIIELK 125 (152)
T ss_pred eecCCChhhHHHHHHHHHH-HHHHHhcCHHHHHHHHHHH
Confidence 5544333321 12211 123333 488999999888
No 26
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=94.75 E-value=0.16 Score=61.40 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=80.7
Q ss_pred HhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH------------------HHHHHHHhccCCCCCceEee
Q 006140 183 LIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV------------------LHRFLDYYNTFDWDNYCISI 244 (659)
Q Consensus 183 lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV------------------L~~FF~yYs~FDw~~~~ISI 244 (659)
.....+.|+..+.++|.|+.+ |-.+-..|||+++-|+++| +..-|+|.+.+||...+|++
T Consensus 303 ~~s~~~~f~da~~Llk~Wlrq--Rs~~~~~~gfg~f~~s~lvv~L~s~~ki~~~~S~yqvfR~vl~flat~dlt~~~~~l 380 (1121)
T KOG2054|consen 303 TLSSAKGFKDALALLKVWLRQ--RSLDIGQGGFGGFLLSALVVYLVSTRKIHTTLSAYQVFRSVLQFLATTDLTVNGISL 380 (1121)
T ss_pred HHhhhhhHHHHHHHHHHHHHh--hhhhcccCcchHHHHHHHHHHHHhcCchhhcchHHHHHHHHHHHHhhhhhhccceEe
Confidence 344578899999999999963 4445568899999998776 44567899999999999988
Q ss_pred cCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHH
Q 006140 245 NGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHR 324 (659)
Q Consensus 245 ~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~r 324 (659)
.. -+ .+++ +.++ |. . ....+..| .....|++.+++..++++
T Consensus 381 ~~-~~-~s~~------------------~~~~-----f~-------e------~~~~~f~D-~s~~~NLc~~mt~s~y~~ 421 (1121)
T KOG2054|consen 381 VP-SS-PSLP------------------ALAD-----FH-------E------GQLVTFID-SSGHLNLCANMTASTYEQ 421 (1121)
T ss_pred cc-CC-CCch------------------hhhh-----hh-------h------cceeeEec-cCCcchhhhhccHHHHHH
Confidence 51 10 1111 1000 00 0 12334444 234568999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 006140 325 IRCALSYGAQRLGEIL 340 (659)
Q Consensus 325 Ir~aF~~aa~~L~~il 340 (659)
+|++.+.++..|....
T Consensus 422 ~q~ea~ltl~lL~~~~ 437 (1121)
T KOG2054|consen 422 VQEEARLTLMLLDSRA 437 (1121)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999998887543
No 27
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=93.23 E-value=2.8 Score=44.28 Aligned_cols=145 Identities=20% Similarity=0.264 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----C---CceeEecccccCCCCCCCcc-eEEEecCC-cchH-
Q 006140 50 EERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-----G---IEVFPFGSVPLKTYLPDGDI-DLTVLGHQ-NVEE- 118 (659)
Q Consensus 50 E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-----~---~~V~~FGS~~tGl~lp~SDI-Dl~v~~p~-~l~e- 118 (659)
++.+.+=-+.+.|+.+|...-..++.+++.++.... . ..|.-.||+..|+.+-++|. |++|+... ...|
T Consensus 42 ~~alLkRnqdL~P~~~~q~~I~~~vtKV~~vLdn~~~~~L~~~~ieevrqVGSF~k~T~~tg~~~advVViLkTLPt~Ea 121 (362)
T KOG3793|consen 42 SEALLKRNQDLAPNSAEQASILSLVTKVNNVLDNLVAPGLFEVQIEEVRQVGSFKKGTMTTGHNVADLVVILKTLPTLEA 121 (362)
T ss_pred HHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHhhccCCceEeehhhhhhccceeccccccCCcccceEEEeecCCcHHH
Confidence 333444445799999998888888888877776653 2 35677899999999988665 66665432 1122
Q ss_pred --HHHHHHHHHHHhcCC---------CCceeEeEEEEeeceeeEEEeee--------CCeeEEEee--ecccccchhHHH
Q 006140 119 --DLARFVCKILENEDQ---------DSVFEIKDVQYVPAQVKIVKCSV--------QNIPVDISF--NQMAGLSALCFL 177 (659)
Q Consensus 119 --~~~~~v~~iL~~~~~---------~~~~~V~~V~vI~ArVPIIK~~~--------~gI~VDISf--nn~~gi~~s~~L 177 (659)
.+-+++.+-|+.... ...|.+. -.+|+|-|+--++ ..+..|+-. .+..+++...+.
T Consensus 122 V~aLg~Kv~e~lka~d~~Evltvl~~e~G~~I~---s~~~~VRiLIt~iP~n~~KLEP~lHLD~K~M~~~l~a~RH~~WF 198 (362)
T KOG3793|consen 122 VAALGNKVVESLRAQDPSEVLTVLTNETGFEIS---SSDATVRILITTVPPNLRKLEPELHLDIKVMQSALAAIRHARWF 198 (362)
T ss_pred HHHHHHHHHHHhhhcChHHHHHHHhhccceeee---cccceEEEEEeecCchhcccChhhhhhHHHHHHHHHHHhhhhhh
Confidence 222333332222111 1122332 2489998886653 145666532 233445555555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q 006140 178 EKVDRLIGKDHLFKRSVILIKAWC 201 (659)
Q Consensus 178 ~~id~lv~~~p~fr~Lv~lIK~Wa 201 (659)
+++ ......+-|++++|--.
T Consensus 199 ee~----A~~s~~~~lir~LKDlr 218 (362)
T KOG3793|consen 199 EEN----ASQSTVKVLIRLLKDLR 218 (362)
T ss_pred hhh----hhHHHHHHHHHHHHHHH
Confidence 543 22344778888888743
No 28
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=92.42 E-value=1.5 Score=54.25 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=79.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH-------------------HHHHHHHhccCCCCCc
Q 006140 180 VDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV-------------------LHRFLDYYNTFDWDNY 240 (659)
Q Consensus 180 id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV-------------------L~~FF~yYs~FDw~~~ 240 (659)
|..+..++|.|.+.++++|+|.. +.++ .+.++.-+++||| +++|+++-+.|||...
T Consensus 675 i~~l~~~~p~fs~tvRL~KrW~~--shlL---s~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lLs~~dW~~~ 749 (972)
T PF03813_consen 675 IHGLHTRFPSFSPTVRLAKRWLS--SHLL---SGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLLSTWDWREE 749 (972)
T ss_pred HHHHHhhCCchhHHHHHHHHHHH--hccC---cccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHHHhCCCCcC
Confidence 33455678999999999999996 3555 4567889999999 7778888899999986
Q ss_pred eEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccc--cCC
Q 006140 241 CISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGR--SVS 318 (659)
Q Consensus 241 ~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgr--sVs 318 (659)
.+-|. +. . -++.+-.......|..-.+.. .......|.|-.|.|+..-+-. .-+
T Consensus 750 PLiVd----~~--~--------------~l~~~~~~~i~~~f~~~R~~d----p~~~~p~~~IaT~~D~~g~~wT~~~Ps 805 (972)
T PF03813_consen 750 PLIVD----FN--N--------------ELTEEDRAEIETNFDAWRKID----PAMNLPAMFIATPYDPEGSLWTRNGPS 805 (972)
T ss_pred CEEEE----CC--C--------------CCCHHHHHHHHHHHHHhhccC----ccccCCcEEEEeCCCCCCCEeECCCCC
Confidence 65442 00 0 012222333333332111100 0112357999999998855322 344
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006140 319 KGNFHRIRCALSYGAQRLG 337 (659)
Q Consensus 319 ~~~~~rIr~aF~~aa~~L~ 337 (659)
+..+.||+..=+.+.+.|.
T Consensus 806 ~~v~~Rl~~LAk~sl~~l~ 824 (972)
T PF03813_consen 806 KVVAKRLTALAKASLKLLE 824 (972)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777666666655555
No 29
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=91.71 E-value=0.48 Score=48.84 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCceeEecccc----cCC--CCCCCcceEEEecCCcc
Q 006140 75 NYIQRLINGYYGIEVFPFGSVP----LKT--YLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 75 ~~L~~lI~~~~~~~V~~FGS~~----tGl--~lp~SDIDl~v~~p~~l 116 (659)
+.|..+... ++..+-+|||+. +|+ -.++|||||++-.+...
T Consensus 110 ~~l~~~~~~-~g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~~~ 156 (221)
T PRK02098 110 RALLALAAA-HGVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPAAA 156 (221)
T ss_pred HHHHHHHHh-CCCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCChh
Confidence 344444332 688999999999 999 67899999999887543
No 30
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=91.68 E-value=3.7 Score=43.14 Aligned_cols=125 Identities=17% Similarity=0.294 Sum_probs=66.5
Q ss_pred ecccccCCCCCC-CcceEEEecCCcchHHH----HHHHHHHHHhcCCCCceeEe---EEE-Ee-eceeeEEEee--eC--
Q 006140 92 FGSVPLKTYLPD-GDIDLTVLGHQNVEEDL----ARFVCKILENEDQDSVFEIK---DVQ-YV-PAQVKIVKCS--VQ-- 157 (659)
Q Consensus 92 FGS~~tGl~lp~-SDIDl~v~~p~~l~e~~----~~~v~~iL~~~~~~~~~~V~---~V~-vI-~ArVPIIK~~--~~-- 157 (659)
.||++.|+.+.+ -++|+||++...--.++ .+++.+.|+..... +|. +.- ++ ..+.|.+... .+
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT~~lL~~v~~~L~~~L~~~~~~---ev~~~~e~~~~~~~~~~~~~~~~~~lts~ 78 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPTKELLNRVAEKLPEQLKKVTPE---EVTNSVEAAIIIDSCKEPKLEVGIDLTSP 78 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCcHHHHHHHHHHHHHHHhhhCcc---ccccchhhhhhhcccccccceeeEEecCC
Confidence 599999999986 78999999865433333 34444445443321 111 100 11 2233444332 22
Q ss_pred CeeEEEeeec----ccccchh-------HH--H------HHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHH
Q 006140 158 NIPVDISFNQ----MAGLSAL-------CF--L------EKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY 218 (659)
Q Consensus 158 gI~VDISfnn----~~gi~~s-------~~--L------~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSY 218 (659)
.+.+.+.+.. ....... ++ + +|++.....-+..+.++|++|-.+. |. +.-+-|++|
T Consensus 79 ~~r~~~~~~~~~~~~~~~dp~~~Ld~~~cl~aLaalRhakWFq~~a~~l~s~~~viRIlrDl~~---R~--p~w~~L~~W 153 (248)
T PF07528_consen 79 VMRVRVLITTIPENLSKLDPEDHLDRKKCLSALAALRHAKWFQARANGLQSCVIVIRILRDLRQ---RV--PTWQPLSSW 153 (248)
T ss_pred ceEEEEeccccCccccccChhhcCCHHHHHHHHHHHHHhHHHHHHhccCCCcceehhhHHHHHH---hC--CCCCCCChh
Confidence 2344443221 1101110 00 1 2344444444567889999999874 34 336679999
Q ss_pred HHHHHH
Q 006140 219 ALEMMV 224 (659)
Q Consensus 219 aL~lLV 224 (659)
++.+|+
T Consensus 154 ~leLL~ 159 (248)
T PF07528_consen 154 ALELLV 159 (248)
T ss_pred HHHHHH
Confidence 999998
No 31
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=90.92 E-value=0.65 Score=47.25 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=27.9
Q ss_pred cCCceeEeccc----ccCC--CCCCCcceEEEecCCcc
Q 006140 85 YGIEVFPFGSV----PLKT--YLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 85 ~~~~V~~FGS~----~tGl--~lp~SDIDl~v~~p~~l 116 (659)
++..+-+|||+ .+|+ -.++|||||++-.+...
T Consensus 107 ~~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~~~ 144 (202)
T TIGR03135 107 LGVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSPL 144 (202)
T ss_pred CCCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCChh
Confidence 68899999999 8999 67899999999987543
No 32
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=86.15 E-value=1.4 Score=40.58 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcch-----HHHHHHHHHHHHhcC
Q 006140 73 VINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVE-----EDLARFVCKILENED 132 (659)
Q Consensus 73 Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~-----e~~~~~v~~iL~~~~ 132 (659)
+.+.|++.++.+. ++.+..-|||+-|-..- +|||+++..+.... ..++..+.+.|++..
T Consensus 10 i~~~V~~~~~~i~p~~~v~i~GSyRRGK~~~-gDiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g 74 (112)
T PF14792_consen 10 IEEIVKEALEKIDPGLEVEICGSYRRGKETS-GDIDILITHPDPSSVSKKLEGLLEKLVKRLEEKG 74 (112)
T ss_dssp HHHHHHHHHHCCSTT-EEEEEHHHHTT-SEE-SSEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCCcC-CCeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCC
Confidence 3444555555554 79999999999998765 49999999875432 457778888888755
No 33
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=79.68 E-value=12 Score=35.67 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=34.9
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcc---hHHHH----HHHHHHHHhcC
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV---EEDLA----RFVCKILENED 132 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l---~e~~~----~~v~~iL~~~~ 132 (659)
...+..+||+.-+=.++.||+|..|+..... ...+| +.+...|....
T Consensus 49 ~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G 102 (138)
T PF03445_consen 49 PFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECG 102 (138)
T ss_pred CEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999987722 23334 44555565543
No 34
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=76.72 E-value=9.1 Score=37.16 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCc
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN 115 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~ 115 (659)
+..+..+||+..+=-.+.||+|+.++....
T Consensus 55 ~~~~la~Gs~GR~E~~~~SD~D~~~v~~~~ 84 (172)
T cd05401 55 PFALLALGSYGRGELNPSSDQDLLLLYDDD 84 (172)
T ss_pred cEEEEEeCCcccCCcCCCcCcceEEEeCCC
Confidence 467999999999999999999999998654
No 35
>PRK05007 PII uridylyl-transferase; Provisional
Probab=76.10 E-value=13 Score=45.78 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.3
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcc
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l 116 (659)
+..|...|+|.-|--.|.|||||+++.+...
T Consensus 80 ~~alvAvGgyGR~EL~p~SDiDll~l~~~~~ 110 (884)
T PRK05007 80 DLALVAVGGYGRGELHPLSDIDLLILSRKKL 110 (884)
T ss_pred ceEEEecCCCCCcccCCcccceEEEEeCCCC
Confidence 3589999999999999999999999987543
No 36
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=75.92 E-value=37 Score=36.63 Aligned_cols=56 Identities=21% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcchHHHHHHHHHHHHhcC
Q 006140 76 YIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENED 132 (659)
Q Consensus 76 ~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~ 132 (659)
.|...++..- ..+|.+-|||+-|..+ .+|||+++..+......++..|.+.|.+..
T Consensus 149 ~i~~~l~~~~~~~~v~i~GS~RRg~et-~gDiDilv~~~~~~~~~~~~~v~~~l~~~~ 205 (307)
T cd00141 149 IIKEALREVDPVLQVEIAGSYRRGKET-VGDIDILVTHPDATSRGLLEKVVDALVELG 205 (307)
T ss_pred HHHHHHHhCCCceEEEEcccccCCCCc-cCCEEEEEecCCccccccHHHHHHHHHhCC
Confidence 3333344332 6899999999988765 589999998775322334445555565543
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.31 E-value=16 Score=44.32 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.2
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcchH
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEE 118 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e 118 (659)
+..+...|.|.-|--.|.||||+.++.|....+
T Consensus 66 ~~aLvAVGGyGRgEL~P~SDiDlL~L~p~~~~~ 98 (867)
T COG2844 66 GLALVAVGGYGRGELHPLSDIDLLLLSPQKLTD 98 (867)
T ss_pred ceEEEEeccccccccCCCccceEEEecCCCCCh
Confidence 478999999999999999999999999875533
No 38
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=74.91 E-value=7.6 Score=46.54 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhc---CCceeEecccccCCCCCCCcceEEEecCCc
Q 006140 68 KKRKEVINYIQRLINGYY---GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN 115 (659)
Q Consensus 68 ~~R~~Vi~~L~~lI~~~~---~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~ 115 (659)
+.|+.+......+++... +..+...|+|.-|--.|.|||||+++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~ 56 (693)
T PRK00227 6 QLREDAEASALALLGSLQLPPGTALAATGSLARREMTPYSDLDLILLHPPG 56 (693)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEeccccccCcCCCcCceEEEEeCCc
Confidence 456677777777776543 678999999999999999999999998743
No 39
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=70.18 E-value=12 Score=38.41 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhcCCceeEecccc----cCC--CCCCCcceEEEecCCcc
Q 006140 71 KEVINYIQRLINGYYGIEVFPFGSVP----LKT--YLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 71 ~~Vi~~L~~lI~~~~~~~V~~FGS~~----tGl--~lp~SDIDl~v~~p~~l 116 (659)
...+..|..+. ...+...-+|||+. ||+ -.++|||||++..+...
T Consensus 102 ~~~l~~l~~~~-~~~~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~~ 152 (213)
T PF10620_consen 102 QPALQALRALL-DALGLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSPS 152 (213)
T ss_pred HHHHHHHHHHH-HHcCCCEEEehhHHHHHHhCccccCCCCCceEEEeCCChh
Confidence 34555666666 55699999999985 555 24689999999988755
No 40
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=69.42 E-value=23 Score=43.77 Aligned_cols=59 Identities=27% Similarity=0.464 Sum_probs=44.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH-------------------HHHHHHHhccCCCCCce
Q 006140 181 DRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV-------------------LHRFLDYYNTFDWDNYC 241 (659)
Q Consensus 181 d~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV-------------------L~~FF~yYs~FDw~~~~ 241 (659)
..+...++.|-..+++.|+|... .+++ |++---++++|| +.+|+.+-++|||....
T Consensus 812 ~~l~qsh~~ys~vvrLaKrWl~s--hLL~---~h~~De~iELLva~lf~~p~p~~~psS~~~gFlRfL~llS~~dW~~~P 886 (1121)
T KOG2054|consen 812 QSLSQSHPFYSSVVRLAKRWLGS--HLLS---GHHLDEAIELLVAALFLKPGPLVPPSSPENGFLRFLSLLSTWDWKFDP 886 (1121)
T ss_pred HHHhhcccchhHHHHHHHHHHHH--Hhhc---cchHHHHHHHHHHHHhcCccCCCCCCCcchhHHHHHHHHhcCcccCCc
Confidence 33456688999999999999963 4543 334467888888 78899999999999865
Q ss_pred Eee
Q 006140 242 ISI 244 (659)
Q Consensus 242 ISI 244 (659)
.-|
T Consensus 887 LIv 889 (1121)
T KOG2054|consen 887 LIV 889 (1121)
T ss_pred eEE
Confidence 544
No 41
>PRK03059 PII uridylyl-transferase; Provisional
Probab=67.12 E-value=36 Score=41.97 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
+..|...|+|.-|--.|.|||||+++.+.
T Consensus 61 ~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 61 GAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred CeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 46899999999999999999999999864
No 42
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=66.97 E-value=9.8 Score=38.91 Aligned_cols=43 Identities=28% Similarity=0.515 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEecccccCCCCCCCcceEEEecC
Q 006140 69 KRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGH 113 (659)
Q Consensus 69 ~R~~Vi~~L~~lI~~~~~~~V~~FGS~~tGl~lp~SDIDl~v~~p 113 (659)
+|+++...++.+.+ ++..-..+||.+.|=--|+||+|++|..+
T Consensus 22 kRe~A~~i~e~l~~--f~ie~~v~gSvarGDV~p~SDvDV~I~~~ 64 (228)
T COG2413 22 KREKARKIMEGLSD--FGIEAVVYGSVARGDVRPGSDVDVAIPEP 64 (228)
T ss_pred HHHHHHHHHHHHHH--hcchhEEEeeeeccCcCCCCCceEEEecC
Confidence 45555544444443 35566779999999889999999999874
No 43
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=62.61 E-value=11 Score=40.33 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEecccccCCCCCCCcceEEEecC
Q 006140 46 WLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPDGDIDLTVLGH 113 (659)
Q Consensus 46 ~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~~~~V~~FGS~~tGl~lp~SDIDl~v~~p 113 (659)
.|.=|.++.++++. +.++.+-.+|++.+... ..--...=+-||...|++-.+||||++|-++
T Consensus 87 iLrPeeRl~eil~s----~~~~~~~rai~~~led~--gVp~~~mGVTGSiL~gl~~~nSDIDfVVYG~ 148 (315)
T COG1665 87 ILRPEERLEEILES----PSSESKARAIVEFLEDA--GVPVNSMGVTGSILLGLYDENSDIDFVVYGQ 148 (315)
T ss_pred hcCHHHHHHHHHhC----cccHHHHHHHHHHHHHc--CCchhhccccccccccccCCCCCceEEEEcH
Confidence 34445566666654 33223333344333331 0112344567999999999999999999984
No 44
>PRK04374 PII uridylyl-transferase; Provisional
Probab=60.52 E-value=36 Score=42.01 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=25.8
Q ss_pred CceeEecccccCCCCCCCcceEEEecCC
Q 006140 87 IEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
..|...|+|.-|--.|.|||||+++.+.
T Consensus 73 ~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 73 LSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred EEEEEcCCccccccCCcccceEEEEecC
Confidence 5799999999999999999999999864
No 45
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=59.44 E-value=51 Score=40.88 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc------CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 64 IVSEKKRKEVINYIQRLINGYY------GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 64 ~eE~~~R~~Vi~~L~~lI~~~~------~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
.+=.+.|..+++.+-..+-..+ +..|...|.|.-|--.|.|||||+++.+.
T Consensus 50 ~~~~~~~s~~~d~~l~~~~~~~~~~~~~~~alvAvGgyGR~EL~p~SDiDll~l~~~ 106 (895)
T PRK00275 50 RRLIEDRAWFVDQILQQAWHQFDWSDDADIALVAVGGYGRGELHPYSDIDLLILLDS 106 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEcCCccccCcCCCCCceEEEEecC
Confidence 3344555666654433332221 35789999999999999999999999874
No 46
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=59.12 E-value=31 Score=37.61 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.7
Q ss_pred HHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc--hHHHHHHHHHHHHhcC
Q 006140 76 YIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV--EEDLARFVCKILENED 132 (659)
Q Consensus 76 ~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l--~e~~~~~v~~iL~~~~ 132 (659)
.|++.+.... ++.|.+-|||+-|- ..+.|||+++.-|..- +..++..|...|++..
T Consensus 160 ~V~~av~~~~p~~~vt~~GsfRRGk-~~ggDvD~LithP~~~s~~~~~~~~l~~~le~~g 218 (353)
T KOG2534|consen 160 TVQEAVWAFDPEAFVTVTGSFRRGK-KMGGDVDFLITHPGSTSTEAKLLQLLMILLEKKG 218 (353)
T ss_pred HHHHHHhhcCCCcEEEEeccccCCc-ccCCCeeEEEeCCCCCchhhhHHHHHHHHHHhcC
Confidence 3344444333 89999999999885 4589999999988643 3456677777777654
No 47
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=58.96 E-value=18 Score=37.17 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCceeEecccc----cCC--CCCCCcceEEEecCCcchHHHHHHHHHHHH
Q 006140 74 INYIQRLINGYYGIEVFPFGSVP----LKT--YLPDGDIDLTVLGHQNVEEDLARFVCKILE 129 (659)
Q Consensus 74 i~~L~~lI~~~~~~~V~~FGS~~----tGl--~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~ 129 (659)
+..|..+... ++...-+|||.. ||+ ..++|||||++..+..+..+-+..+.+.+.
T Consensus 98 l~~l~~~~~~-~~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~~l~~~~~~~ll~~l~ 158 (207)
T PRK01293 98 LQALAALLDA-LGLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLARDQARELLQLLD 158 (207)
T ss_pred HHHHHHHHHh-CCCceeeehhHHHHHhhCCccccCCCCccEeecCCCcccHHHHHHHHHHHh
Confidence 3344444333 488889999986 444 245799999999886554333334444443
No 48
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=57.94 E-value=52 Score=40.55 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCc
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN 115 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~ 115 (659)
+..+...|+|.-|---|.|||||+++.+..
T Consensus 56 ~iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 56 DLALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred CeEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 357899999999999999999999998743
No 49
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=54.00 E-value=54 Score=40.30 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCc
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN 115 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~ 115 (659)
+..+...|||.-|--.|.||||++++.+..
T Consensus 43 ~~aliA~GgyGR~El~p~SDiDll~l~~~~ 72 (850)
T TIGR01693 43 GIALVAVGGYGRGELAPYSDIDLLFLHDGK 72 (850)
T ss_pred CeEEEEeCCccccCcCCCCCCeEEEEeCCC
Confidence 567999999999999999999999998743
No 50
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=52.96 E-value=16 Score=35.31 Aligned_cols=47 Identities=23% Similarity=0.469 Sum_probs=31.0
Q ss_pred HHHHHHH---HHHHHHHHHHhhc---CCceeEecccccCCCCCC---CcceEEEec
Q 006140 66 SEKKRKE---VINYIQRLINGYY---GIEVFPFGSVPLKTYLPD---GDIDLTVLG 112 (659)
Q Consensus 66 E~~~R~~---Vi~~L~~lI~~~~---~~~V~~FGS~~tGl~lp~---SDIDl~v~~ 112 (659)
+...|.. ++..+.+++++.+ +-.+..||||.+-+--|+ +|||++=..
T Consensus 24 ~~~grh~vS~lV~~V~klmeEyLrrhNk~CicYGSyslhllN~~I~YgDIDilqTN 79 (149)
T PF03296_consen 24 KVMGRHNVSDLVENVNKLMEEYLRRHNKSCICYGSYSLHLLNPNIKYGDIDILQTN 79 (149)
T ss_dssp ---------THHHHHHHHHHHHHHH-TTTEEEESHHHHHTTSTTS--SS-EEEEST
T ss_pred cccccccCcHHHHHHHHHHHHHHHhhCCCeEEeeeeeEEecCCCcccCcchhhhcc
Confidence 4444544 4667777777766 788999999998887776 999997653
No 51
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=51.04 E-value=55 Score=32.69 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=46.6
Q ss_pred CCceeEecccccC----CCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEeeceeeEEEeeeCCee
Q 006140 86 GIEVFPFGSVPLK----TYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIP 160 (659)
Q Consensus 86 ~~~V~~FGS~~tG----l~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~ 160 (659)
+.++...|+++.. .--...|||+++..+... ..++++.+ .+...... .-.+ ....--++++...++.
T Consensus 16 gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~~~~~~~~~~---a~~~g~~~--~~~~---~~~~~~~~~~~~~~v~ 87 (181)
T PF09970_consen 16 GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPNLEADALREV---AEENGWDL--GWTD---FGTPRYVVKVGGEDVR 87 (181)
T ss_pred CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchHHHHHHHHHH---HHHcCCCc--Cccc---cCCCceEEEeCCCCeE
Confidence 6789999999754 344579999999876543 23333333 33332210 0011 1223344566667899
Q ss_pred EEEeeecccccchh
Q 006140 161 VDISFNQMAGLSAL 174 (659)
Q Consensus 161 VDISfnn~~gi~~s 174 (659)
||+ +.|..++...
T Consensus 88 IDl-~~ni~~~~v~ 100 (181)
T PF09970_consen 88 IDL-LENIGDFYVP 100 (181)
T ss_pred EEc-hhccCCcccC
Confidence 999 6666666543
No 52
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=47.47 E-value=12 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcCCc---eeEecccccCCCCCCCcceEEEecC
Q 006140 70 RKEVINYIQRLINGYYGIE---VFPFGSVPLKTYLPDGDIDLTVLGH 113 (659)
Q Consensus 70 R~~Vi~~L~~lI~~~~~~~---V~~FGS~~tGl~lp~SDIDl~v~~p 113 (659)
+..|.+.|+++-++. +.+ +...||.+-|+..|+||.|+..+.-
T Consensus 2 ~~~i~~~l~~ie~~~-~~~il~~~~sGS~a~G~~s~dSD~D~r~vy~ 47 (247)
T PF10127_consen 2 RETIQEKLNEIEKEH-NVKILYACESGSRAYGFASPDSDYDVRGVYI 47 (247)
T ss_pred chHHHHHHHHHHHhc-CCcEEEEecccccccCCCCCCcCcccchhcc
Confidence 345566666665542 333 4678999999999999999988754
No 53
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=44.91 E-value=1.1e+02 Score=29.01 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=43.3
Q ss_pred cCCceeEecccccCC--CCCCCcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEEeeceeeEEEeeeCCeeEE
Q 006140 85 YGIEVFPFGSVPLKT--YLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVD 162 (659)
Q Consensus 85 ~~~~V~~FGS~~tGl--~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~VD 162 (659)
.+.+++..|-++-.. ..+..|||+++.... .++. .++++.... +-| ....+..++++...+..+|
T Consensus 15 ~g~~~ylVGG~VRD~Llg~~~~DiDi~v~~~~---~~~~---~~l~~~~~~------~~v-~~~~~f~t~~v~~~~~~~d 81 (139)
T cd05398 15 LGYEAYLVGGAVRDLLLGRPPKDIDIATDADG---PEFA---EALFKKIGG------RVV-GLGEEFGTATVVINGLTID 81 (139)
T ss_pred cCceEEEECChHHHHHcCCCCCCceEEEeCCC---HHHH---HHHHHhcCC------cEE-ecCCcccEEEEEECCEEEE
Confidence 588999999888544 347799999998742 2222 222322110 111 1245667777788899999
Q ss_pred Eeeec
Q 006140 163 ISFNQ 167 (659)
Q Consensus 163 ISfnn 167 (659)
|+..+
T Consensus 82 i~~~R 86 (139)
T cd05398 82 VATLR 86 (139)
T ss_pred Ecccc
Confidence 97544
No 54
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=43.03 E-value=72 Score=35.88 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhc---CCceeEecccccCCCCCC---CcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEE
Q 006140 70 RKEVINYIQRLINGYY---GIEVFPFGSVPLKTYLPD---GDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQ 143 (659)
Q Consensus 70 R~~Vi~~L~~lI~~~~---~~~V~~FGS~~tGl~lp~---SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~ 143 (659)
...++..+.+++++.+ +-.+..||||.+-+--|+ +|||++=... ..|+-.++-++.-. ..-.
T Consensus 148 VSdLV~~V~klmeEyLrrhNk~CicYGSySlhllNp~I~YgDIDilqTNa----r~fLInlaflI~fi--------tG~~ 215 (467)
T PHA02996 148 VSDLVGNVNKLMEEYLRRHNKSCICYGSYSLHLLNPEIEYGDIDILQTNS----RTFLINLAFLIKFI--------TGRN 215 (467)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEeeceeeeecCCccccCCcceeeecc----HHHHHHHHHHHhhh--------cCce
Confidence 3456788888888776 788999999999888776 9999986644 23333333333321 1112
Q ss_pred EeeceeeEEE
Q 006140 144 YVPAQVKIVK 153 (659)
Q Consensus 144 vI~ArVPIIK 153 (659)
++--+||.+|
T Consensus 216 v~LlkVPyLk 225 (467)
T PHA02996 216 VVLLKVPYLK 225 (467)
T ss_pred EEEEEccccc
Confidence 3456788886
No 55
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=36.30 E-value=19 Score=39.53 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.8
Q ss_pred eeEecccccCCCCCCCcceEEEec
Q 006140 89 VFPFGSVPLKTYLPDGDIDLTVLG 112 (659)
Q Consensus 89 V~~FGS~~tGl~lp~SDIDl~v~~ 112 (659)
...+||.+-|+..|+||+|+-=+.
T Consensus 6 ~~~~GShaYG~~tp~SD~D~rGV~ 29 (330)
T PHA02603 6 KGLFGSHLYGTSTPESDVDYKGIF 29 (330)
T ss_pred EEecccceeCCCCCCcccccceee
Confidence 457999999999999999987554
No 56
>PRK03381 PII uridylyl-transferase; Provisional
Probab=34.69 E-value=1e+02 Score=37.70 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=26.3
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
+..|...|+|..|--.|.|||||+++.+.
T Consensus 57 ~~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 57 GVALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred CeEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 35789999999999999999999999873
No 57
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=34.44 E-value=2.2e+02 Score=28.72 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=42.0
Q ss_pred HHHHHHHHhhc--CCceeEecccccCCCCC------CCcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEEee
Q 006140 75 NYIQRLINGYY--GIEVFPFGSVPLKTYLP------DGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYVP 146 (659)
Q Consensus 75 ~~L~~lI~~~~--~~~V~~FGS~~tGl~lp------~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI~ 146 (659)
..+.++++.+- |..+.+++-.++...-| .+|||+.|- +.. +..+.++|.+.+. .... ..
T Consensus 58 ~~~~~i~~~l~~~gI~~~~lKG~~l~~~Y~~~~~R~~~DiDlLV~-~~d-----~~~a~~~L~~~Gy----~~~~---~~ 124 (249)
T PF14907_consen 58 AELQEILAALNANGIPVILLKGAALAQLYPDPGLRPMGDIDLLVP-PED-----LERAVELLEELGY----RIES---PS 124 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEchHHHHHhCCCCCCCCCCCeEEEEe-CCc-----HHHHHHHHHHcCC----Eecc---CC
Confidence 34444444332 77888874433222222 399999998 322 3455667766542 1111 11
Q ss_pred ceeeEEEeeeCCeeEEEeeecc
Q 006140 147 AQVKIVKCSVQNIPVDISFNQM 168 (659)
Q Consensus 147 ArVPIIK~~~~gI~VDISfnn~ 168 (659)
...........|+.|||.+.-.
T Consensus 125 ~~~~~~~~~~~~~~idlH~~l~ 146 (249)
T PF14907_consen 125 EHHWVYSHEPKGISIDLHWRLF 146 (249)
T ss_pred CcceEEEecCCCEEEEEEecCC
Confidence 1111222224789999987644
No 58
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=31.82 E-value=23 Score=37.22 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=18.3
Q ss_pred ecccccCCCCCCCcceEEEec
Q 006140 92 FGSVPLKTYLPDGDIDLTVLG 112 (659)
Q Consensus 92 FGS~~tGl~lp~SDIDl~v~~ 112 (659)
=||..-|+..|+||+|+=-+.
T Consensus 16 sGS~~yGf~spdSDyDvR~V~ 36 (248)
T COG3541 16 SGSHLYGFPSPDSDYDVRGVH 36 (248)
T ss_pred ccccccCCCCCCCccceeeEE
Confidence 399999999999999997663
No 59
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=26.51 E-value=1.2e+02 Score=33.15 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 73 VINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 73 Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
+.+.|...++... .++|.+-|||+-|..+ .+|||+++..+.
T Consensus 150 i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDIDili~~~~ 191 (334)
T smart00483 150 VEYIVKRAVRKILPDAIVTLTGSFRRGKET-GHDVDFLITSPH 191 (334)
T ss_pred HHHHHHHHHHhhCCCcEEEEecccccCCCc-CCCeeEEEecCC
Confidence 3344444444443 6889999999998766 579999998765
No 60
>PRK05092 PII uridylyl-transferase; Provisional
Probab=26.47 E-value=3.2e+02 Score=34.16 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=25.8
Q ss_pred CceeEecccccCCCCCCCcceEEEecCC
Q 006140 87 IEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
..|...|.|.-|--.|.|||||+++.+.
T Consensus 106 ~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 106 LAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred eEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 4789999999999999999999999874
No 61
>PRK08609 hypothetical protein; Provisional
Probab=26.16 E-value=5.7e+02 Score=30.19 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=23.5
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
..+|.+-||++-|--+ ..|||+++..+.
T Consensus 175 ~~~v~~~GS~RR~~et-~gDiDili~~~~ 202 (570)
T PRK08609 175 IIRFSRAGSLRRARET-VKDLDFIIATDE 202 (570)
T ss_pred ccEEEeccchhccccc-cCCeeEEEecCC
Confidence 5789999999998766 479999998764
No 62
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=25.03 E-value=1.2e+02 Score=31.29 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.9
Q ss_pred ceeEecccccCCCCCCCcceEEEecCCcc
Q 006140 88 EVFPFGSVPLKTYLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 88 ~V~~FGS~~tGl~lp~SDIDl~v~~p~~l 116 (659)
-|+.-||..+=...+.||+|+=|+....+
T Consensus 99 GlY~MGS~gSi~Qs~~SDlDiWvCh~~~L 127 (204)
T PF12633_consen 99 GLYSMGSTGSIGQSSSSDLDIWVCHDSDL 127 (204)
T ss_pred EEEecCCCccccCCCCCCCeEEEEcCCCC
Confidence 58999999999999999999999987666
Done!