Query 006140
Match_columns 659
No_of_seqs 289 out of 1326
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1.7E-45 5.7E-50 410.0 27.8 331 22-405 17-408 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 5.2E-45 1.8E-49 407.3 28.6 330 23-404 5-395 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 6.5E-45 2.2E-49 387.0 25.2 258 48-339 15-336 (349)
4 3nyb_A Poly(A) RNA polymerase 100.0 4.7E-44 1.6E-48 378.7 25.4 252 42-340 16-300 (323)
5 2ikf_A RNA uridylyl transferas 100.0 1.6E-44 5.4E-49 386.3 19.3 272 22-336 9-348 (353)
6 4e8f_A Poly(A) RNA polymerase 100.0 5E-43 1.7E-47 381.1 24.5 266 38-340 33-365 (405)
7 3hj4_A Minor editosome-associa 100.0 3.9E-40 1.3E-44 353.7 20.5 275 48-338 6-366 (384)
8 2b4v_A RNA editing complex pro 100.0 1.2E-37 4.1E-42 343.7 21.8 261 43-340 14-441 (468)
9 3pq1_A Poly(A) RNA polymerase; 100.0 4E-36 1.4E-40 330.2 25.3 274 34-340 117-439 (464)
10 1r89_A TRNA nucleotidyltransfe 99.7 1.6E-15 5.6E-20 165.5 24.5 226 49-330 3-243 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.4 2.7E-12 9.2E-17 136.7 19.4 174 53-229 11-241 (349)
12 4at7_A Interleukin enhancer-bi 97.8 0.0014 4.7E-08 69.8 20.0 160 58-226 36-225 (364)
13 1no5_A Hypothetical protein HI 97.6 0.00012 4.2E-09 65.5 8.1 58 73-130 13-71 (114)
14 1ylq_A Putative nucleotidyltra 97.4 0.00021 7.1E-09 62.2 6.6 42 73-114 3-46 (96)
15 1wot_A Putative minimal nucleo 97.4 0.00029 1E-08 61.5 6.7 29 86-114 25-53 (98)
16 2rff_A Putative nucleotidyltra 96.9 0.00066 2.2E-08 60.9 4.4 46 69-114 11-61 (111)
17 4at7_B NF90, interleukin enhan 96.3 0.13 4.3E-06 55.3 17.7 162 58-227 21-260 (383)
18 4ebj_A Aminoglycoside nucleoti 95.6 0.011 3.6E-07 60.3 5.2 37 78-114 30-68 (272)
19 1kny_A Kntase, kanamycin nucle 95.5 0.0099 3.4E-07 60.3 4.6 43 72-114 14-59 (253)
20 3jz0_A Lincosamide nucleotidyl 89.5 0.44 1.5E-05 49.4 6.1 91 68-171 22-118 (287)
21 2fmp_A DNA polymerase beta; nu 83.4 14 0.00046 38.9 13.7 112 76-202 161-287 (335)
22 2bcq_A DNA polymerase lambda; 74.3 28 0.00096 36.5 12.6 115 74-203 156-282 (335)
23 2fcl_A Hypothetical protein TM 67.4 32 0.0011 32.6 10.2 84 70-165 15-106 (169)
24 3b0x_A DNA polymerase beta fam 46.6 2E+02 0.0068 32.1 13.7 104 76-202 169-274 (575)
25 1jaj_A DNA polymerase beta-lik 45.7 22 0.00075 34.1 4.9 96 86-203 31-132 (174)
26 2ihm_A POL MU, DNA polymerase 45.6 20 0.00069 38.0 5.2 57 75-132 164-222 (360)
27 1jms_A Terminal deoxynucleotid 40.2 49 0.0017 35.4 7.1 56 76-132 185-244 (381)
28 2pbe_A AAD6, aminoglycoside 6- 35.5 22 0.00075 36.6 3.4 43 72-114 8-53 (294)
29 3er9_B Poly(A) polymerase cata 31.2 40 0.0014 36.4 4.5 56 58-113 146-210 (479)
30 1v4a_A Glutamate-ammonia-ligas 21.6 74 0.0025 34.5 4.6 27 87-113 155-181 (440)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.7e-45 Score=410.03 Aligned_cols=331 Identities=18% Similarity=0.211 Sum_probs=248.9
Q ss_pred CCCCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhh-----------------
Q 006140 22 SHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGY----------------- 84 (659)
Q Consensus 22 ~~~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~----------------- 84 (659)
-..+|+|+|||++.|+++++..+..|..+..- ..+.||+||.++|++|++.|+++|++|
T Consensus 17 ~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~----~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~ 92 (514)
T 1q79_A 17 QKHYGITSPISLAAPKETDALLTQKLVETLKP----FGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIEN 92 (514)
T ss_dssp --CCSSSCCSCCCCCCHHHHHHHHHHHHHHGG----GTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTT
T ss_pred ccccCCCCCCcCCCCCHHHHHhHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhccc
Confidence 34699999999999999999877654433221 148899999999999999999999975
Q ss_pred cCCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEE
Q 006140 85 YGIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVD 162 (659)
Q Consensus 85 ~~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VD 162 (659)
.+++|++||||++|+++|+||||++|++|..+ +++++..+.++|++.. .+++|+.| +|+||||||+++||.||
T Consensus 93 ~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~-----~v~~v~~I~~A~VPIIK~~~~gi~vD 167 (514)
T 1q79_A 93 VGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQE-----EVKDLRAVEEAFVPVIKLCFDGIEID 167 (514)
T ss_dssp CBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCT-----TEEEEEEETTSSSCEEEEEETTEEEE
T ss_pred CCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCc-----cCceEEEecCCcccEEEEEECCeeEE
Confidence 26999999999999999999999999999876 5788999999999854 47888888 99999999999999999
Q ss_pred Eeeecccccc-------------------------hhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcH
Q 006140 163 ISFNQMAGLS-------------------------ALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLIST 217 (659)
Q Consensus 163 ISfnn~~gi~-------------------------~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsS 217 (659)
|+|++..+.. .....++|.+++++.+.||.++++||+||+ +|+||+++.|+|||
T Consensus 168 L~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak-~Rgi~~~~~G~lgg 246 (514)
T 1q79_A 168 ILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAK-RHNIYSNILGFLGG 246 (514)
T ss_dssp EEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCBCTTTTSBCH
T ss_pred EEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCccccCCccH
Confidence 9999864321 112346778889999999999999999999 56999999999999
Q ss_pred HHHHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhc
Q 006140 218 YALEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIY 282 (659)
Q Consensus 218 YaL~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~ 282 (659)
|+|+||| |.+||+||++|||++.++ + +...+ ++. + ...+.+.
T Consensus 247 ~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~-l------~~~~~----~~l--~-~~~w~p~--------- 303 (514)
T 1q79_A 247 VSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVL-L------KQPEE----CNL--N-LPVWDPR--------- 303 (514)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBC-S------SCCCC----CSS--C-CCCCCTT---------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeE-e------cccCC----CCC--C-CcccCCc---------
Confidence 9999999 778999999999998332 2 21110 000 0 0000000
Q ss_pred cccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhhhh--hhHhHHhhh
Q 006140 283 SVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGL--EKFFINTLE 360 (659)
Q Consensus 283 ~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~~~--~~fF~~tl~ 360 (659)
. + ...+.+.|+|+||+++.+|+|++|+++++.+|++||++|++.|.+++.- +.....-+ ..||..- +
T Consensus 304 ----~----~-~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~-~~~w~~Lf~~~~ff~~y-~ 372 (514)
T 1q79_A 304 ----V----N-PSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLS-KAEWSKLFEAPNFFQKY-K 372 (514)
T ss_dssp ----T----C-GGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHTCCCCHHHHC-S
T ss_pred ----c----C-CcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHhCCcchhhhc-c
Confidence 0 0 0011367999999999999999999999999999999999999998752 11111111 1233221 0
Q ss_pred ccCCCCCCCCCCccccccCCCccccccCCCccccccccccccccc
Q 006140 361 RNGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCYH 405 (659)
Q Consensus 361 r~g~g~rpd~~~~~~~~g~~~~~~~~L~GD~~s~~~nl~Ygq~~~ 405 (659)
.. ..+.+.+....+...+.|-.+|.+..|...-..+
T Consensus 373 ~y---------l~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~ 408 (514)
T 1q79_A 373 HY---------IVLLASAPTEKQRLEWVGLVESKIRILVGSLEKN 408 (514)
T ss_dssp EE---------EEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTS
T ss_pred eE---------EEEEEEECCHHHhhhheehhhhhHHHHHHHhccC
Confidence 00 0011223444666778888888888888766554
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=5.2e-45 Score=407.34 Aligned_cols=330 Identities=18% Similarity=0.245 Sum_probs=248.4
Q ss_pred CCCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-----------------
Q 006140 23 HTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY----------------- 85 (659)
Q Consensus 23 ~~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~----------------- 85 (659)
..+|+|+|||++.|+++++..+..|..+..-. .+.||+||.++|++|++.|+++|++|.
T Consensus 5 ~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~----~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~ 80 (530)
T 2hhp_A 5 KVFGITGPVSTVGATAAENKLNDSLIQELKKE----GSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDA 80 (530)
T ss_dssp GGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred ccCccCCCCcCCCCChHHhhhhHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcccc
Confidence 46999999999999999998887655443322 488999999999999999999999863
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEE
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDI 163 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDI 163 (659)
+++|++||||++|+++|+||||++|++|..+ +++++..+.++|++.. .+++|++| +|+||||||+++||.|||
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~-----~v~~v~~I~~A~VPIIK~~~~gi~vDL 155 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERK-----ELDEIAPVPDAFVPIIKIKFSGISIDL 155 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCT-----TEEEEEEETTSSSCEEEEEETTEEEEE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCC-----CCceEEEecCCcccEEEEEECCEeeEE
Confidence 6999999999999999999999999999765 5789999999998754 47888888 999999999999999999
Q ss_pred eeecccc--------cch-----------------hHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCCCcHH
Q 006140 164 SFNQMAG--------LSA-----------------LCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGLISTY 218 (659)
Q Consensus 164 Sfnn~~g--------i~~-----------------s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSY 218 (659)
+|++..+ +.+ ....+.|.+++++.+.||.++++||+||+ +|+||+++.|+||||
T Consensus 156 ~f~~~~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak-~Rgl~~~~~G~lgg~ 234 (530)
T 2hhp_A 156 ICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQ-RRAVYANIFGFPGGV 234 (530)
T ss_dssp EEEECSSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HTTCCCGGGTSCCHH
T ss_pred EEeccccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHH-HcCCCcccccCCcHH
Confidence 9987632 111 12346778889999999999999999999 569999999999999
Q ss_pred HHHHHH---------------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhcc
Q 006140 219 ALEMMV---------------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYS 283 (659)
Q Consensus 219 aL~lLV---------------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~ 283 (659)
+|+||| |..||+||++|||++ .|.+.. ..+ ++. + .-.+.+.
T Consensus 235 ~~~~LVa~~lQl~P~~s~~~LL~~FF~~y~~~dw~~-pV~l~~------~~~----g~~--~-~~~w~p~---------- 290 (530)
T 2hhp_A 235 AWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQ-PVILKP------IED----GPL--Q-VRVWNPK---------- 290 (530)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTS-CEESSC------CCC----CSS--C-SCCCCTT----------
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCC-ceEecc------cCC----CCc--c-ccccCcc----------
Confidence 999999 778999999999997 444431 100 000 0 0000000
Q ss_pred ccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHhcCCCcchhhhh--hhHhHHhhhc
Q 006140 284 VPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEILTLPGHCLGMGL--EKFFINTLER 361 (659)
Q Consensus 284 ~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il~~p~e~~~~~~--~~fF~~tl~r 361 (659)
. . ..-..+.|+|+||+++.+|+|++|++.++.+|++||++|++.|.+++. .+.....-| ..||.+- +.
T Consensus 291 ---~----~-~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~-~~~~w~~Lf~~~~ff~~y-~~ 360 (530)
T 2hhp_A 291 ---I----Y-AQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFS-NKKSWANLFEKNDFFFRY-KF 360 (530)
T ss_dssp ---T----C-HHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHTCCCCHHHHC-SE
T ss_pred ---c----C-CCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHcCCCChHHhc-Ce
Confidence 0 0 000136899999999999999999999999999999999999999874 222222211 1333321 00
Q ss_pred cCCCCCCCCCCccccccCCCccccccCCCcccccccccccccc
Q 006140 362 NGKGLRPDVQVPIHAFGSGKSEAADLSGDYDSYYNGLLYGQCY 404 (659)
Q Consensus 362 ~g~g~rpd~~~~~~~~g~~~~~~~~L~GD~~s~~~nl~Ygq~~ 404 (659)
. +..-+...| ...+..++.|..++.+..|+..-..
T Consensus 361 ~-------l~i~~~~~g-~~~~~~~w~G~veSr~r~Lv~~Le~ 395 (530)
T 2hhp_A 361 Y-------LEITAYTRG-SDEQHLKWSGLVESKVRLLVMKLEV 395 (530)
T ss_dssp E-------EEEEEEEES-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred E-------EEEEEEecC-CHHHHhhhcchHHHHHHHHHHHhhc
Confidence 0 000011112 3356677888899988888855444
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=6.5e-45 Score=386.96 Aligned_cols=258 Identities=22% Similarity=0.310 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHH
Q 006140 48 LAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVC 125 (659)
Q Consensus 48 ~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~ 125 (659)
.++..+.++++.++||++|.+.|++++++|+++|++.| +++|++|||+++|+++|+||||++|+.+... .+.++..+.
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~ 94 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFY 94 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHH
Confidence 45566788999999999999999999999999999988 8999999999999999999999999988755 344544554
Q ss_pred HHHHhcCCCCceeEeEEEEe-eceeeEEEeee-------CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHH
Q 006140 126 KILENEDQDSVFEIKDVQYV-PAQVKIVKCSV-------QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILI 197 (659)
Q Consensus 126 ~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~-------~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lI 197 (659)
..+.+.. .++++| +||||||||.+ .++.|||||++..|++++.++..+ +..+|+||+|+++|
T Consensus 95 ~~~~~~~-------~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~---~~~~~~~r~l~~~i 164 (349)
T 4fh3_A 95 EELIAEG-------FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSY---TKLDARLKPMVLLV 164 (349)
T ss_dssp HHHHHTT-------EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHH---HHHCTTHHHHHHHH
T ss_pred HHHHhhc-------ccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHH---hhcCHHHHHHHHHH
Confidence 4444432 233445 99999999986 479999999999999999998774 55689999999999
Q ss_pred HHHHHHhhcccCcccCCCcHHHHHHHH-----------------------------------------------------
Q 006140 198 KAWCYYESRILGAHYGLISTYALEMMV----------------------------------------------------- 224 (659)
Q Consensus 198 K~Wak~~~rI~ga~~GgLsSYaL~lLV----------------------------------------------------- 224 (659)
|+||++ ++|++++.|+||||+|++||
T Consensus 165 K~wak~-~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~L 243 (349)
T 4fh3_A 165 KHWAKR-KQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSL 243 (349)
T ss_dssp HHHHHH-TTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHH
T ss_pred HHHHHH-cCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhcccccCcccHHHH
Confidence 999995 69999999999999999998
Q ss_pred HHHHHHHhc-cCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEE
Q 006140 225 LHRFLDYYN-TFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNI 303 (659)
Q Consensus 225 L~~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~I 303 (659)
|++||+||+ +|||.+.+||++++... ++++. +...... .............+.|||
T Consensus 244 L~~FF~~Y~~~Fd~~~~vIsi~~~~~~-------------------~~k~~-k~~~~~~---~~~~~~~~~~~~~~~l~I 300 (349)
T 4fh3_A 244 LHGFFRFYAYKFEPREKVVTFRRPDGY-------------------LTKQE-KGWTSAT---EHTGSADQIIKDRYILAI 300 (349)
T ss_dssp HHHHHHHHHHTCCTTTBCBCSSSTTCC-------------------CBHHH-HTCC------------------CCSSCB
T ss_pred HHHHHHHhhhccCCCCceEEecCCCCc-------------------cchHH-hcccccc---cccCcccccCCCCceEEE
Confidence 457999999 89999999999854211 11110 0000000 000000001112468999
Q ss_pred eCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHH
Q 006140 304 VDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEI 339 (659)
Q Consensus 304 eDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~i 339 (659)
|||+++++|+||+|+..++.+|++||++|++.|...
T Consensus 301 eDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~ 336 (349)
T 4fh3_A 301 EDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSR 336 (349)
T ss_dssp BCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred ECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998753
No 4
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-44 Score=378.75 Aligned_cols=252 Identities=22% Similarity=0.375 Sum_probs=210.6
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc--hH
Q 006140 42 DAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV--EE 118 (659)
Q Consensus 42 ~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l--~e 118 (659)
+..++| ...+.+|+++++||++|.+.|+++++.|+++++++| +++|++|||+++|+++|+||||++|..+... ..
T Consensus 16 ~~~~~L--~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~ 93 (323)
T 3nyb_A 16 EISDWL--TFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR 93 (323)
T ss_dssp SHHHHH--HHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred hHHHHH--HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHH
Confidence 344444 455889999999999999999999999999999988 8999999999999999999999999998754 23
Q ss_pred HHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeee--CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHH
Q 006140 119 DLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSV--QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVI 195 (659)
Q Consensus 119 ~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~--~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~ 195 (659)
+++..++++|++... +.+|++| +|+||||||++ +|+.|||+|++..|+.++.++.. ++..+|.||+|++
T Consensus 94 ~~l~~l~~~L~~~~~-----~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~---~~~~~~~~r~lv~ 165 (323)
T 3nyb_A 94 NNLYSLASHLKKKNL-----ATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIRE---WLDDTPGLRELVL 165 (323)
T ss_dssp HHHHHHHHHHHHTTS-----CSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHH---HHHSCTTHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----ceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHH---HHHhhhhHHHHHH
Confidence 577889999998653 3466777 99999999996 79999999999999999988876 4667999999999
Q ss_pred HHHHHHHHhhcccCcccCCCcHHHHHHHH------------------------HHHHHHHhc-cCCCCCceEeec-C-Cc
Q 006140 196 LIKAWCYYESRILGAHYGLISTYALEMMV------------------------LHRFLDYYN-TFDWDNYCISIN-G-PV 248 (659)
Q Consensus 196 lIK~Wak~~~rI~ga~~GgLsSYaL~lLV------------------------L~~FF~yYs-~FDw~~~~ISI~-G-Pv 248 (659)
+||+||+ +++|++++.|+||||+|++|| |.+||+||+ +|||++.+|||+ | |.
T Consensus 166 ~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~ 244 (323)
T 3nyb_A 166 IVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPV 244 (323)
T ss_dssp HHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEE
T ss_pred HHHHHHH-HcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCCcc
Confidence 9999999 569999999999999999999 789999999 999999999997 2 21
Q ss_pred cccCCcchhhcccccCCCccccCHHHHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHH
Q 006140 249 AISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCA 328 (659)
Q Consensus 249 ~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~a 328 (659)
.+. ++++ . .+ ..+ .....||||||++++||+||++. ++..|++|
T Consensus 245 ~~~-------------------k~~~----~-~~-------~~~---~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~ 288 (323)
T 3nyb_A 245 YFP-------------------KSTW----S-AI-------QPI---KNPFSLAIQDPGDESNNISRGSF--NIRDIKKA 288 (323)
T ss_dssp EEE-------------------GGGC----G-GG-------CSC---SCSSSCCBEETTEEEEETTTTCT--THHHHHHH
T ss_pred eee-------------------HHhc----c-cc-------ccc---CCCceEEEeCCCCCCcccccchH--HHHHHHHH
Confidence 111 0000 0 00 000 11367999999999999999974 58999999
Q ss_pred HHHHHHHHHHHh
Q 006140 329 LSYGAQRLGEIL 340 (659)
Q Consensus 329 F~~aa~~L~~il 340 (659)
|++|++.|.+-+
T Consensus 289 F~~A~~~L~~~~ 300 (323)
T 3nyb_A 289 FAGAFDLLTNRC 300 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999997753
No 5
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.6e-44 Score=386.35 Aligned_cols=272 Identities=19% Similarity=0.260 Sum_probs=201.9
Q ss_pred CCCCCCccCCCCCCCChhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccc-cCC
Q 006140 22 SHTSSSSSYSSPPNLYPFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVP-LKT 99 (659)
Q Consensus 22 ~~~~~~~~pis~~~P~p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~-tGl 99 (659)
-+++|.+++++.++|+++++.. .+.++++...++.+|.+.|+++++.|+++|++.+ +++|++|||++ +|+
T Consensus 9 ~~~~~~~~~~~~~~P~~~~l~~--------~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl 80 (353)
T 2ikf_A 9 HHSSGLVPRGSHMPPSPAVVGR--------SLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGV 80 (353)
T ss_dssp --------------CCHHHHHH--------HHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSS
T ss_pred cccccceecccCCCCCHHHHHH--------HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCC
Confidence 3457888999999999988632 3445566778899999999999999999999988 89999999997 999
Q ss_pred CCCCCcceEEEecCCcc----------------hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeee-CCeeE
Q 006140 100 YLPDGDIDLTVLGHQNV----------------EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSV-QNIPV 161 (659)
Q Consensus 100 ~lp~SDIDl~v~~p~~l----------------~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~-~gI~V 161 (659)
++|+||||++|+.+..+ ..+++.++.++|++... +.+|+.| +||||||||++ .||.|
T Consensus 81 ~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-----~~~v~~i~~ArVPIiK~~~~~~i~~ 155 (353)
T 2ikf_A 81 HEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHL-----SWNVEEVRRTRVPVVRVKGGGAVDF 155 (353)
T ss_dssp CCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCT-----TSEEEEECSSSSCEEEEECSSSCEE
T ss_pred CCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCC-----CCceEEecccceeEEEEEcCCCcEE
Confidence 99999999999876321 24567788889988653 2455555 99999999998 69999
Q ss_pred EEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcccCccc-CCCcHHHHHHHH----------------
Q 006140 162 DISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHY-GLISTYALEMMV---------------- 224 (659)
Q Consensus 162 DISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~-GgLsSYaL~lLV---------------- 224 (659)
||||+|..|+.+++++..+ +..+|.||+|+++||+||+. ++|++++. |+||||+|++||
T Consensus 156 Dis~~n~~g~~~t~ll~~~---~~~~p~~r~l~~~iK~wa~~-r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l 231 (353)
T 2ikf_A 156 DITAYRRNGVRNSALLRAY---FEQNPPCRWLSMSIKRWSKQ-TGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPS 231 (353)
T ss_dssp EEEESCCHHHHHHHHHHHH---HHHSTTHHHHHHHHHHHHHH-TTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGG
T ss_pred EEEecCccHHHHHHHHHHH---HHhCccHHHHHHHHHHHHHH-cCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCcc
Confidence 9999999999999999875 44689999999999999994 69999999 999999999998
Q ss_pred -----------------------------HHHHHHHhc-cCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHH
Q 006140 225 -----------------------------LHRFLDYYN-TFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEF 274 (659)
Q Consensus 225 -----------------------------L~~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~ef 274 (659)
|++||+||+ +|||.+++|||+.+..+. ++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~~~~--------------------k~~ 291 (353)
T 2ikf_A 232 TIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISLNRPGITT--------------------KEE 291 (353)
T ss_dssp GCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECSSSSSCEE--------------------HHH
T ss_pred ccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEcCCCccee--------------------chh
Confidence 257999999 899999999997442211 110
Q ss_pred HHHHhhh-ccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHH
Q 006140 275 LKKCREI-YSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRL 336 (659)
Q Consensus 275 l~~~~~~-~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L 336 (659)
.. +... ...+. .++ ....+.||||||+++++|+||+|+..++.+|+.+|++|++++
T Consensus 292 ~~-w~~~~~~~~~---~~~--~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 292 LD-WTKSAEDFAR---MNG--EKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTA 348 (353)
T ss_dssp HT-CSHHHHTTCE---ETT--EECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTT
T ss_pred hc-cccccccccc---ccC--CCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00000 000 112468999999999999999999999999999999999875
No 6
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=5e-43 Score=381.14 Aligned_cols=266 Identities=21% Similarity=0.303 Sum_probs=211.6
Q ss_pred hhchhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc
Q 006140 38 PFSIDAELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV 116 (659)
Q Consensus 38 p~~i~~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l 116 (659)
++.+..+.+..++..+.+++++++||++|.+.|+++++.|+++|++.| +++|++|||+++|+++|+||||++|+.+...
T Consensus 33 ~~~~~~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~ 112 (405)
T 4e8f_A 33 SYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV 112 (405)
T ss_dssp -----CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC--
T ss_pred ccccCchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC
Confidence 334445667788889999999999999999999999999999999988 8999999999999999999999999987633
Q ss_pred -hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEee-e--C----CeeEEEeeecccccchhHHHHHHHHHhcCC
Q 006140 117 -EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCS-V--Q----NIPVDISFNQMAGLSALCFLEKVDRLIGKD 187 (659)
Q Consensus 117 -~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~-~--~----gI~VDISfnn~~gi~~s~~L~~id~lv~~~ 187 (659)
.++++..+.+.|++.. .+|+.| +||||||||. + + ||.|||||+|..|+.++.+++.+.+ .+
T Consensus 113 ~~~~~l~~l~~~L~~~~-------~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~---~~ 182 (405)
T 4e8f_A 113 QSDTIALQFYEELIAEG-------FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTK---LD 182 (405)
T ss_dssp -CTTHHHHHHHHHHHTT-------EEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHH---HC
T ss_pred CHHHHHHHHHHHHHhcC-------CeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHh---hC
Confidence 2347788888898752 244445 9999999999 4 4 8999999999999999999987644 58
Q ss_pred hhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH-------------------------------------------
Q 006140 188 HLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMV------------------------------------------- 224 (659)
Q Consensus 188 p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV------------------------------------------- 224 (659)
|+||+|+++||+||+. ++|++++.|+||||+|++||
T Consensus 183 p~~r~Lv~~lK~wak~-rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~ 261 (405)
T 4e8f_A 183 ARLKPMVLLVKHWAKR-KQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPP 261 (405)
T ss_dssp TTHHHHHHHHHHHHHH-TTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCC
T ss_pred HHHHHHHHHHHHHHHH-cCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhcc
Confidence 9999999999999995 69999999999999999998
Q ss_pred ----------HHHHHHHhc-cCCCCCceEeecC-CccccCCcchhhcccccCCCccccCHHHHHHHhhhccccc--cccc
Q 006140 225 ----------LHRFLDYYN-TFDWDNYCISING-PVAISSLPEIVAETVENDGDELLLSPEFLKKCREIYSVPI--TALE 290 (659)
Q Consensus 225 ----------L~~FF~yYs-~FDw~~~~ISI~G-Pv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~~~~~~p~--~~~e 290 (659)
|.+||+||+ +|||.+.+|||+. ...+. ++- + .+.... .+..
T Consensus 262 ~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~--------------------K~~-k----~w~~~~~~~g~~ 316 (405)
T 4e8f_A 262 SQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLT--------------------KQE-K----GWTSATEHTGSA 316 (405)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCB--------------------HHH-H----TCCC--------
T ss_pred ccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccc--------------------ccc-c----cccccccccccc
Confidence 357999999 9999999999982 21111 110 0 000000 0000
Q ss_pred cCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHh
Q 006140 291 NTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEIL 340 (659)
Q Consensus 291 ~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il 340 (659)
.. ..-....|||||||++++|+||+|+..++.+|+++|++|++.|....
T Consensus 317 ~~-~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~ 365 (405)
T 4e8f_A 317 DQ-IIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS 365 (405)
T ss_dssp ------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cc-cccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 00023689999999999999999999999999999999999997753
No 7
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=3.9e-40 Score=353.69 Aligned_cols=275 Identities=19% Similarity=0.242 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCc------chH-H
Q 006140 48 LAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN------VEE-D 119 (659)
Q Consensus 48 ~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~------l~e-~ 119 (659)
.++..+.+|+++++||++|.+.|++++++|+++|++.| +++|++|||+++|+++|+||||++|..+.. ++. .
T Consensus 6 ~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~~~ 85 (384)
T 3hj4_A 6 EFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVD 85 (384)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccchhh
Confidence 45667999999999999999999999999999999988 899999999999999999999999998642 111 1
Q ss_pred ---HHHH--HHHHHHhcCCCCceeEeEEEEeeceeeEEEeee--CCeeEEEeeecccccchhHHHHHHHHHhcC-ChhhH
Q 006140 120 ---LARF--VCKILENEDQDSVFEIKDVQYVPAQVKIVKCSV--QNIPVDISFNQMAGLSALCFLEKVDRLIGK-DHLFK 191 (659)
Q Consensus 120 ---~~~~--v~~iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~--~gI~VDISfnn~~gi~~s~~L~~id~lv~~-~p~fr 191 (659)
..+. +.+.+.. ..+++|.+++||||||||.+ +|+.|||||+|..|+.++.++..+.+ . ++++|
T Consensus 86 ~~~~lrll~L~k~~~~------~~ie~V~ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~---~~p~rlr 156 (384)
T 3hj4_A 86 EQNNKRMTRFGKEASA------MGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQ---VFPDFYG 156 (384)
T ss_dssp HHHHHHHHHHHHHHHH------HTCEEEEEECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHH---TSHHHHH
T ss_pred HHHHHHHHHHHhhccc------CCeeEEeecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHh---cCcHHHH
Confidence 1111 2222221 13566777899999999997 59999999999999999999987644 4 34699
Q ss_pred HHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH-----------------------------------------------
Q 006140 192 RSVILIKAWCYYESRILGAHYGLISTYALEMMV----------------------------------------------- 224 (659)
Q Consensus 192 ~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV----------------------------------------------- 224 (659)
+|+++||+||+. ++|++++.|+||||+|++||
T Consensus 157 ~LvllvK~Wak~-rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N 235 (384)
T 3hj4_A 157 AYIHLVKAWGKA-REVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDD 235 (384)
T ss_dssp HHHHHHHHHHHH-TTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSC
T ss_pred HHHHHHHHHHHH-cCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCC
Confidence 999999999994 69999999999999999999
Q ss_pred -----------HHHHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCcccc---CHHHHHHHhhh-cccccc--
Q 006140 225 -----------LHRFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLL---SPEFLKKCREI-YSVPIT-- 287 (659)
Q Consensus 225 -----------L~~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll---~~efl~~~~~~-~~~p~~-- 287 (659)
|++||+||++|||.+.+|||+.|..+.+++..++..-. + .+. .++|-+...+. -+.|-.
T Consensus 236 ~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~-~---~~~~~~~~~w~~~~~~~~~~~~~~~~ 311 (384)
T 3hj4_A 236 DEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHL-E---LLGSRKRLEWEKHIAEHKEDGPLDEN 311 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHSGGGCSCCHH
T ss_pred cccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhh-h---hccchhhhhhhhhhhccccCCCCCCC
Confidence 24799999999999999999998877665554421100 0 000 01111100000 000000
Q ss_pred ------ccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHHHHHHHHHH
Q 006140 288 ------ALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGE 338 (659)
Q Consensus 288 ------~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~ 338 (659)
..+..-.+ ....+.||| |...+|+||.|+......||+||++|+++|..
T Consensus 312 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (384)
T 3hj4_A 312 DFSASMQNETTQRP-SNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLID 366 (384)
T ss_dssp HHHHHHHHHHHTSC-SSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTT
T ss_pred ccccccCccccccc-cccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhc
Confidence 00000001 136789999 99999999999999999999999999998854
No 8
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.2e-37 Score=343.70 Aligned_cols=261 Identities=17% Similarity=0.225 Sum_probs=198.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEeccc-ccCCCCCCCcceEEEecCCcc--hH
Q 006140 43 AELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSV-PLKTYLPDGDIDLTVLGHQNV--EE 118 (659)
Q Consensus 43 ~~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~-~tGl~lp~SDIDl~v~~p~~l--~e 118 (659)
.+.|..+-..+.+......+++++.+.|..+++.|+.+|+++| +++|++|||+ .+|+++|+||||++++.+... ..
T Consensus 14 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~ 93 (468)
T 2b4v_A 14 PDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHE 93 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccch
Confidence 3445555566666666778899999999999999999999988 9999999999 699999999999999987422 11
Q ss_pred -H--HHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEee----e----------------------------------
Q 006140 119 -D--LARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCS----V---------------------------------- 156 (659)
Q Consensus 119 -~--~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~----~---------------------------------- 156 (659)
. ...++.++|++... .+.+.+|+.| +||||||||. +
T Consensus 94 ~~~~~~~~l~~~L~~~~~--~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 171 (468)
T 2b4v_A 94 VQAKRTDKLRTVIKRYVP--HYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDND 171 (468)
T ss_dssp HHHHHHHHHHHHHHTTSC--HHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCHHH
T ss_pred hhHHHHHHHHHHHHHhcc--ccccceeEeccCCCcceEEEEecccccccccccccccccccccccccccccccccccccc
Confidence 1 12457888887511 1123466777 9999999997 0
Q ss_pred -----------------------------------------------------------------------CCeeEEEee
Q 006140 157 -----------------------------------------------------------------------QNIPVDISF 165 (659)
Q Consensus 157 -----------------------------------------------------------------------~gI~VDISf 165 (659)
.||+|||||
T Consensus 172 ~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DISf 251 (468)
T 2b4v_A 172 VEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDISF 251 (468)
T ss_dssp HHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEEES
T ss_pred ccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEEec
Confidence 267899999
Q ss_pred ecccccchhHHHHHHHHHhcCChh-hHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHH--------------------
Q 006140 166 NQMAGLSALCFLEKVDRLIGKDHL-FKRSVILIKAWCYYESRILGAHYGLISTYALEMMV-------------------- 224 (659)
Q Consensus 166 nn~~gi~~s~~L~~id~lv~~~p~-fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLV-------------------- 224 (659)
+ ..|+.|+.+|..+.+ .+|+ +|+|+++||+||+ .++|++++.|+||||+|++||
T Consensus 252 n-~~gi~nS~ll~~y~~---~dpr~~r~Lvl~vK~Wak-~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~ 326 (468)
T 2b4v_A 252 V-GYGVKNSYLIRHYLH---NGPVAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPH 326 (468)
T ss_dssp C-SHHHHHHHHHHHHHH---HSCTTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCC
T ss_pred c-hhHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHH-HcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccc
Confidence 8 899999999988644 5889 9999999999999 569999999999999999998
Q ss_pred ------------------------HHHHHHHhc-cCCCCCceEeecCCccccCCcchhhcccccCCCccccCHHHHHHHh
Q 006140 225 ------------------------LHRFLDYYN-TFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPEFLKKCR 279 (659)
Q Consensus 225 ------------------------L~~FF~yYs-~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~efl~~~~ 279 (659)
|++||+||+ +|||.+.+|||+.+..+ .++..
T Consensus 327 lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g~~~--------------------~K~~~---- 382 (468)
T 2b4v_A 327 PAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRS--------------------YRSDI---- 382 (468)
T ss_dssp GGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCE--------------------EHHHH----
T ss_pred hhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCCcce--------------------ecccc----
Confidence 357999999 99999999999743211 11100
Q ss_pred hhccccccccccCCccccCcceEEeCCCCC----CCCccccCChhhHHHHHHHHHHHHHHHHHHh
Q 006140 280 EIYSVPITALENTGHEFAIKHLNIVDPLKD----NNNLGRSVSKGNFHRIRCALSYGAQRLGEIL 340 (659)
Q Consensus 280 ~~~~~p~~~~e~~~~~f~~~~L~IeDP~dp----snNlgrsVs~~~~~rIr~aF~~aa~~L~~il 340 (659)
.+..+. ++... ....|||||||++ ++|+||+|+..++.+|+.+|++|++.|.+..
T Consensus 383 -~w~~~~----n~~~~-~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 383 -GWNFPQ----NKKGT-FSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp -TCCCGG----GEETT-EECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -cccccc----cccCC-CcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 011000 00001 1247999999999 9999999999999999999999999987754
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=330.24 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=183.1
Q ss_pred CCCChhchhh--hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEE
Q 006140 34 PNLYPFSIDA--ELWLLAEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTV 110 (659)
Q Consensus 34 ~~P~p~~i~~--~~~l~~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v 110 (659)
.+|+..++.. .....++..+.+|+++++||++|.+.|..+++.|+++++..| +++|++|||+++|+++|+||||+|+
T Consensus 117 ~~~~~~~l~~~L~~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 117 XXXSNKQLFELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp CC--CHHHHHHHTTSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred ccCCHHHHHHHHhccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 4455454432 222347888999999999999999999999999999999988 8999999999999999999999999
Q ss_pred ecCCcc--------------------------hHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeC--CeeE
Q 006140 111 LGHQNV--------------------------EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQ--NIPV 161 (659)
Q Consensus 111 ~~p~~l--------------------------~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~--gI~V 161 (659)
..+... ...++..+++.|++... .+.+|+.| +||||||||.+. ||.|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~----~~~~v~~I~~ARVPIIKf~~~~tgi~~ 272 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGP----GCVGVQKILNARCPLVRFSHQASGFQC 272 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSST----TEEEEEEECSSSSCEEEEEETTTCCEE
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCC----CCceeEEecCCCCCEEEEEEcCCCeEE
Confidence 764310 01345667778876431 24567766 999999999984 9999
Q ss_pred EEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhcccCcccCC-CcHHHHHHHHHHHHHHHhc--cC---
Q 006140 162 DISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYYESRILGAHYGL-ISTYALEMMVLHRFLDYYN--TF--- 235 (659)
Q Consensus 162 DISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~~~rI~ga~~Gg-LsSYaL~lLVL~~FF~yYs--~F--- 235 (659)
||||+|..|+.++.+++.+ ...+|++|+|+++||+||+ .++|++++.|+ ||||+|++||++ ||+... -.
T Consensus 273 DIS~nn~~gi~ns~ll~~y---~~~dprlr~Lvl~vK~Wak-~r~Ln~~~~Gg~LsSYsL~lMVI~-fLQ~~~ppvLP~L 347 (464)
T 3pq1_A 273 ALTTNNRIALTSSELLYIY---GALDSRVRALVFSVRCWAR-AHSLTSSIPGAWITNFSLTMMVIF-FLQRRSPPILPTL 347 (464)
T ss_dssp EEECSCTTHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH-HTTSSCC--CCSCCHHHHHHHHHH-HHHSCC-------
T ss_pred EEecCCCcHHHHHHHHHHH---HHhCccHHHHHHHHHHHHH-HhCCCccccCCCcCcHHHHHHHHH-HHHccCCCcCCCh
Confidence 9999999999999998874 5579999999999999999 56999999998 999999999944 665432 00
Q ss_pred -------CCCCceEeecCC-cc-ccCCcchhhcccccCC--CccccCHHHHHHHhhhccccccccccCCccccCcceEEe
Q 006140 236 -------DWDNYCISINGP-VA-ISSLPEIVAETVENDG--DELLLSPEFLKKCREIYSVPITALENTGHEFAIKHLNIV 304 (659)
Q Consensus 236 -------Dw~~~~ISI~GP-v~-l~sl~~~~~e~p~~~g--~~~Ll~~efl~~~~~~~~~p~~~~e~~~~~f~~~~L~Ie 304 (659)
+... ..-+.|- +. .+.+.++. ...|.. +++| .+|++.+. .| .|....++|
T Consensus 348 q~l~~~~~~~~-~~~vdg~~~~F~~dl~~l~--~~~N~~slgeLL--~gFF~yYa-~F------------Df~~~vIsI- 408 (464)
T 3pq1_A 348 DSLKTLADAED-KCVIEGNNCTFVRDLSRIK--PSQNTETLELLL--KEFFEYFG-NF------------AXXXXXXXX- 408 (464)
T ss_dssp CCSHHHHTTC------------------------CCCCCCHHHHH--HHHHHHGG-GC------------CCCCCCCCC-
T ss_pred HHhccccCccc-ceeeccccccccccHhhcC--CCCCcCCHHHHH--HHHHHHHH-hC------------CCccccccc-
Confidence 0000 0000000 00 00000000 000100 0111 23444332 23 233455666
Q ss_pred CCCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHh
Q 006140 305 DPLKDNNNLGRSVSKGNFHRIRCALSYGAQRLGEIL 340 (659)
Q Consensus 305 DP~dpsnNlgrsVs~~~~~rIr~aF~~aa~~L~~il 340 (659)
..|++++|+...+.+++.+++.|+.+|..-.
T Consensus 409 -----~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~ 439 (464)
T 3pq1_A 409 -----XXXXXXXVSQSQLQKFVDLARESAWILQQED 439 (464)
T ss_dssp -----C-------CHHHHHHHHHHHHHHHHHHHCC-
T ss_pred -----ccccccccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 8899999999999999999999999987544
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.70 E-value=1.6e-15 Score=165.50 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhcCCceeEecccccCCCCCC-CcceEEEecCCcc-hHHHHHHHHH
Q 006140 49 AEERIQEILCTIQPAIVSEKKRKEVINYIQRLINGYYGIEVFPFGSVPLKTYLPD-GDIDLTVLGHQNV-EEDLARFVCK 126 (659)
Q Consensus 49 ~E~~i~e~~e~I~PT~eE~~~R~~Vi~~L~~lI~~~~~~~V~~FGS~~tGl~lp~-SDIDl~v~~p~~l-~e~~~~~v~~ 126 (659)
.|....++++.|.|+++|.+.-..+.+.|...|++ ++.++...||++.|+++++ |||||+++.+... ++++-..-.+
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~~e~l~~~~l~ 81 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLE 81 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CCCeEEEeccccCCCcCCCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999998 7789999999999999987 9999999998654 3443222222
Q ss_pred HHHhcCCCCceeEeEEEEeeceeeEEEeeeCCeeEEEee--ecccc--cch-hHHHHHHHHHhcCC-hhhHHHHHHHHHH
Q 006140 127 ILENEDQDSVFEIKDVQYVPAQVKIVKCSVQNIPVDISF--NQMAG--LSA-LCFLEKVDRLIGKD-HLFKRSVILIKAW 200 (659)
Q Consensus 127 iL~~~~~~~~~~V~~V~vI~ArVPIIK~~~~gI~VDISf--nn~~g--i~~-s~~L~~id~lv~~~-p~fr~Lv~lIK~W 200 (659)
+++..-. +.+.-.|..|-|...++|+++||.- ....+ +.+ .+....-..++... ..++.+++++|+|
T Consensus 82 ~~~e~l~-------~~~~~ya~hpyV~~~f~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f 154 (437)
T 1r89_A 82 IGKAVLD-------SYEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKGF 154 (437)
T ss_dssp HHHHHSS-------SEEEEESSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred HHHHHHH-------HhhhhccCCceEEEEecceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 3332111 1122368889999988999999963 33322 222 22211112233221 1188999999999
Q ss_pred HHHhhcccCc--ccCCCcHHHHHHHHHH-----HHHHHhccCCCCCceEeecCCccccCCcchhhcccccCCCccccCHH
Q 006140 201 CYYESRILGA--HYGLISTYALEMMVLH-----RFLDYYNTFDWDNYCISINGPVAISSLPEIVAETVENDGDELLLSPE 273 (659)
Q Consensus 201 ak~~~rI~ga--~~GgLsSYaL~lLVL~-----~FF~yYs~FDw~~~~ISI~GPv~l~sl~~~~~e~p~~~g~~~Ll~~e 273 (659)
.+ ..++||+ ..+|+|||+++||+++ ..++..+ +|.. ++.|. +.
T Consensus 155 ~k-~~~~ygse~k~~gfSsYllELLv~~yG~f~~vl~~~~--~w~~-~~~Id----~~---------------------- 204 (437)
T 1r89_A 155 LK-ANGIYGAEYKVRGFSGYLCELLIVFYGSFLETVKNAR--RWTR-RTVID----VA---------------------- 204 (437)
T ss_dssp HH-HTTCBCCSTTTCCBCHHHHHHHHHHHSSHHHHHHHHT--TCCT-TEEEE----GG----------------------
T ss_pred HH-hCCcCCCcccCCCCCHHHHHHHHHHHcCHHHHHHHHH--HhCC-CeEEe----cC----------------------
Confidence 98 4689975 5788999999999944 2333333 4543 22221 00
Q ss_pred HHHHHhhhccccccccccCCccccCcceEEeCCCCCCCCccccCChhhHHHHHHHHH
Q 006140 274 FLKKCREIYSVPITALENTGHEFAIKHLNIVDPLKDNNNLGRSVSKGNFHRIRCALS 330 (659)
Q Consensus 274 fl~~~~~~~~~p~~~~e~~~~~f~~~~L~IeDP~dpsnNlgrsVs~~~~~rIr~aF~ 330 (659)
+ ....| ..+|.|+||.|+++|+|.+++..++.++..+-+
T Consensus 205 --------~---------~~~~~-~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~ 243 (437)
T 1r89_A 205 --------K---------GEVRK-GEEFFVVDPVDEKRNVAANLSLDNLARFVHLCR 243 (437)
T ss_dssp --------G---------TEEEE-CSSCEEEETTEEEEETTTTCCHHHHHHHHHHHH
T ss_pred --------C---------CcccC-CCCEEEECCCCCCCchhhcCCHHHHHHHHHHHH
Confidence 0 00112 367899999999999999999988775444333
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.44 E-value=2.7e-12 Score=136.74 Aligned_cols=174 Identities=19% Similarity=0.300 Sum_probs=100.0
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhh-c-C-------CceeEecccccCCCCCC-CcceEEEecCCc--ch--
Q 006140 53 IQEIL-CTIQPAIVSEKKRKEVINYIQRLINGY-Y-G-------IEVFPFGSVPLKTYLPD-GDIDLTVLGHQN--VE-- 117 (659)
Q Consensus 53 i~e~~-e~I~PT~eE~~~R~~Vi~~L~~lI~~~-~-~-------~~V~~FGS~~tGl~lp~-SDIDl~v~~p~~--l~-- 117 (659)
+.+|+ +.|+|+.++.+.-+..++.|...|++. + + .+++..|||+.|+++++ |||||+|+.+.. .+
T Consensus 11 l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~~~ 90 (349)
T 1px5_A 11 LDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFEDQ 90 (349)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTTHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchhhH
Confidence 55566 899999999998899999999999874 3 1 26788999999999986 999999998752 11
Q ss_pred ----HHHHHHHHHHHHhcCCCCceeEeEEEEe--eceeeE-EEeee------CCeeEEEee--eccccc------ch---
Q 006140 118 ----EDLARFVCKILENEDQDSVFEIKDVQYV--PAQVKI-VKCSV------QNIPVDISF--NQMAGL------SA--- 173 (659)
Q Consensus 118 ----e~~~~~v~~iL~~~~~~~~~~V~~V~vI--~ArVPI-IK~~~------~gI~VDISf--nn~~gi------~~--- 173 (659)
.+++..+.+.|++......+.+ .+++. .-+.|- |.+.+ .++.+||.- .+...+ ..
T Consensus 91 ~~~~~~~l~~i~~~L~~~~~~~~~~~-~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~~y 169 (349)
T 1px5_A 91 LRRRGEFIQEIRRQLEACQREQKFKV-TFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIY 169 (349)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCSS-EEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHHHH
T ss_pred HhhHHHHHHHHHHHHHHhhhhhcccc-ceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChHHH
Confidence 2455666677765321111111 12221 113452 55544 479999864 332111 00
Q ss_pred -----------------hHHHHHHHHHh-cCChhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHHHHHHH
Q 006140 174 -----------------LCFLEKVDRLI-GKDHLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLHRFL 229 (659)
Q Consensus 174 -----------------s~~L~~id~lv-~~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLVL~~FF 229 (659)
.++...-.+++ .+...+|.++++||+|.+.. .. .....+++||+|++|+++.|.
T Consensus 170 ~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~-~~-~~~~~~~ssy~lELL~~~a~e 241 (349)
T 1px5_A 170 VQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTC-KK-THGNKLPPQYALELLTVYAWE 241 (349)
T ss_dssp HHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-HT-TCSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-hh-cccCCCCChHHHHHHHHHHHH
Confidence 01111101122 33557899999999998632 21 223578999999999965443
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.78 E-value=0.0014 Score=69.85 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=98.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhc---C------CceeEecccccCCCCCC-CcceEEEecCCc-ch---HHHHHH
Q 006140 58 CTIQPAIVSEKKRKEVINYIQRLINGYY---G------IEVFPFGSVPLKTYLPD-GDIDLTVLGHQN-VE---EDLARF 123 (659)
Q Consensus 58 e~I~PT~eE~~~R~~Vi~~L~~lI~~~~---~------~~V~~FGS~~tGl~lp~-SDIDl~v~~p~~-l~---e~~~~~ 123 (659)
..|.||++|...-..++++|++++.... + ..|...||++.|+++.+ -|+|++|++... .. +.+.++
T Consensus 36 ~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~lPT~e~v~~L~~k 115 (364)
T 4at7_A 36 QDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNK 115 (364)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCCCCHHHHHHHHHH
Confidence 4799999999999999999999998764 2 36889999999999987 789999987642 12 345677
Q ss_pred HHHHHHhcCCCCceeE--e--EEEEe--eceeeEEEeee--------CCeeEEE--eeecccccchhHHHHHHHHHhcCC
Q 006140 124 VCKILENEDQDSVFEI--K--DVQYV--PAQVKIVKCSV--------QNIPVDI--SFNQMAGLSALCFLEKVDRLIGKD 187 (659)
Q Consensus 124 v~~iL~~~~~~~~~~V--~--~V~vI--~ArVPIIK~~~--------~gI~VDI--Sfnn~~gi~~s~~L~~id~lv~~~ 187 (659)
|.+-|+.........+ . .+.+. ++.|-|+--.. .....|. +...+.+++.+++.+ ... .+
T Consensus 116 V~e~L~~q~~~e~~~~~~~e~~~~I~~~~~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLaalRhAkWfq---~na-~~ 191 (364)
T 4at7_A 116 VVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFE---ENA-SQ 191 (364)
T ss_dssp HHHHHHHHCTTSCCEEEEETTEEEEECSSCEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHHHHHHHHHHH---HHC-CC
T ss_pred HHHHhhhhccccceeeccCcceEEEecCCCcEEEEEEeCChhhccCChhHhcCHHHHHHHHHHhhhhHHHH---hhc-cc
Confidence 7777776532111111 0 01111 23333321110 1222222 222233344443333 222 24
Q ss_pred hhhHHHHHHHHHHHHHhhcccCcccCCCcHHHHHHHHHH
Q 006140 188 HLFKRSVILIKAWCYYESRILGAHYGLISTYALEMMVLH 226 (659)
Q Consensus 188 p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYaL~lLVL~ 226 (659)
..++.++|++|..++ +.. .-+.|+.|++.+|+.+
T Consensus 192 s~v~~lIRIlkDlc~---R~~--~w~pL~~waLELL~~~ 225 (364)
T 4at7_A 192 STVKVLIRLLKDLRI---RFP--GFEPLTPWILDLLGHY 225 (364)
T ss_dssp HHHHHHHHHHHHHHH---HCG--GGTTCCHHHHHHHHHH
T ss_pred cccceeehhhHHHHH---hcC--CcCCCCHHHHHHHHHH
Confidence 667889999999775 222 2367999999999944
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.64 E-value=0.00012 Score=65.51 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcchHHHHHHHHHHHHh
Q 006140 73 VINYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILEN 130 (659)
Q Consensus 73 Vi~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~ 130 (659)
.++.|.+++++.+ ..+|+.|||++.|-+.++|||||+|+............+...|..
T Consensus 13 ~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~~~~~l~~~l~~ 71 (114)
T 1no5_A 13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEAFSE 71 (114)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3455666666665 468999999999999999999999998754322112244555544
No 14
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.44 E-value=0.00021 Score=62.21 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhcC-CceeEecccccCCCCCC-CcceEEEecCC
Q 006140 73 VINYIQRLINGYYG-IEVFPFGSVPLKTYLPD-GDIDLTVLGHQ 114 (659)
Q Consensus 73 Vi~~L~~lI~~~~~-~~V~~FGS~~tGl~lp~-SDIDl~v~~p~ 114 (659)
+++.+.+.+++.++ .+|+.|||++.|-+.++ ||||++|+.+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 45667777777674 79999999999999999 99999998764
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.36 E-value=0.00029 Score=61.49 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCC
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
-..++.|||++.|.+.++||||++|....
T Consensus 25 v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 25 AVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp CSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 36899999999999999999999998764
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.91 E-value=0.00066 Score=60.91 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhh---c-C-CceeEecccccCCCCCCCcceEEEecCC
Q 006140 69 KRKEVINYIQRLINGY---Y-G-IEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 69 ~R~~Vi~~L~~lI~~~---~-~-~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
.+.++++.+++++... + + ..|..|||++.|-+.++|||||+|+...
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 3455555666655543 3 3 5799999999999999999999998764
No 17
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.33 E-value=0.13 Score=55.34 Aligned_cols=162 Identities=17% Similarity=0.253 Sum_probs=92.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhh---c-----C----------------------------------CceeEeccc
Q 006140 58 CTIQPAIVSEKKRKEVINYIQRLINGY---Y-----G----------------------------------IEVFPFGSV 95 (659)
Q Consensus 58 e~I~PT~eE~~~R~~Vi~~L~~lI~~~---~-----~----------------------------------~~V~~FGS~ 95 (659)
..|-|++||.+.-+.++..+++.++.. + + .-|.-.|++
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 467899999999999999999888642 1 0 125669999
Q ss_pred ccCCCCCC-CcceEEEecCCcchHHH----HHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEEeeeCCeeEEEeeeccc
Q 006140 96 PLKTYLPD-GDIDLTVLGHQNVEEDL----ARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVKCSVQNIPVDISFNQMA 169 (659)
Q Consensus 96 ~tGl~lp~-SDIDl~v~~p~~l~e~~----~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK~~~~gI~VDISfnn~~ 169 (659)
+.|+.+.+ -++||||++...--..+ ..+|.+.|+... ...+.|.. .+ .|.+=|-......+.|-|++....
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~~ll~~va~~L~~qL~~~t-~~~y~v~~--~~~ea~i~i~~~~~p~~~v~I~lTSp~ 177 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTTALLDKVADNLAIQLTTVT-EDKYEILQ--SVDDAAIVIKNTKEPPLSLTIHLTSPV 177 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHTTTC-CCCCEEEE--EGGGTEEEEECSSSSCCEEEEEEECHH
T ss_pred cccceECCCCceeEEEEeCCCCcHHHHHHHHHHHHHHHhhcc-CCceEEee--cCCcceEEEecCCCCCeEEEEEECCcc
Confidence 99999975 89999999865332333 344444454422 11333321 12 443333222223455555553320
Q ss_pred c---------------------cchh-H--HHHHHH---HHhc---CChhhHHHHHHHHHHHHHhhcccCcccCCCcHHH
Q 006140 170 G---------------------LSAL-C--FLEKVD---RLIG---KDHLFKRSVILIKAWCYYESRILGAHYGLISTYA 219 (659)
Q Consensus 170 g---------------------i~~s-~--~L~~id---~lv~---~~p~fr~Lv~lIK~Wak~~~rI~ga~~GgLsSYa 219 (659)
- +..- + -|.++. .+-. .-+....++|++|..++ +..+ -+-|+.|+
T Consensus 178 ~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~---R~~~--~~pL~~wa 252 (383)
T 4at7_B 178 VREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCT---RVPT--WGPLRGWP 252 (383)
T ss_dssp HHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHH---HCGG--GGGGTTHH
T ss_pred cccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHH---hcCC--cCCCcHhH
Confidence 0 0000 1 112221 1111 12346789999999775 2222 25788999
Q ss_pred HHHHHHHH
Q 006140 220 LEMMVLHR 227 (659)
Q Consensus 220 L~lLVL~~ 227 (659)
+.+|+.+.
T Consensus 253 LELL~~~a 260 (383)
T 4at7_B 253 LELLCEKS 260 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999553
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=95.59 E-value=0.011 Score=60.34 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=29.7
Q ss_pred HHHHHhhcC--CceeEecccccCCCCCCCcceEEEecCC
Q 006140 78 QRLINGYYG--IEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 78 ~~lI~~~~~--~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
.+.+++.++ .+|..|||++.|-+.++|||||+|+...
T Consensus 30 ve~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 30 VDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 333344454 5799999999999999999999999764
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=95.49 E-value=0.0099 Score=60.27 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhcC---CceeEecccccCCCCCCCcceEEEecCC
Q 006140 72 EVINYIQRLINGYYG---IEVFPFGSVPLKTYLPDGDIDLTVLGHQ 114 (659)
Q Consensus 72 ~Vi~~L~~lI~~~~~---~~V~~FGS~~tGl~lp~SDIDl~v~~p~ 114 (659)
.+++.+...+.+.++ ..|..|||++.|-+.++|||||+|+...
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 14 KIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 344445555555555 5799999999999999999999998764
No 20
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.47 E-value=0.44 Score=49.44 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhcC-CceeEecccccCCCCCCCcceEEEecCCcc-----hHHHHHHHHHHHHhcCCCCceeEeE
Q 006140 68 KKRKEVINYIQRLINGYYG-IEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-----EEDLARFVCKILENEDQDSVFEIKD 141 (659)
Q Consensus 68 ~~R~~Vi~~L~~lI~~~~~-~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-----~e~~~~~v~~iL~~~~~~~~~~V~~ 141 (659)
+..+++++.|.+.+++.-. ..|..+||+++|-.-.-||||+++++.... +..|+..|..++
T Consensus 22 ~~~~e~l~~I~~~~~~d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~~~f~~~~Wl~~fG~~~------------- 88 (287)
T 3jz0_A 22 LKQKELIANVKNLTESDERITACMMYGSFTKGEGDQYSDIEFYIFLKHSITSNFDSSNWLFDVAPYL------------- 88 (287)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGTTTCCHHHHHHHHCCEE-------------
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEECCccCCCCCCccceeEEEEEcCcchhhhhhHHHHHHhhhhh-------------
Confidence 3445667777776655433 468999999999877889999999875422 234444332111
Q ss_pred EEEeeceeeEEEeeeCCeeEEEeeeccccc
Q 006140 142 VQYVPAQVKIVKCSVQNIPVDISFNQMAGL 171 (659)
Q Consensus 142 V~vI~ArVPIIK~~~~gI~VDISfnn~~gi 171 (659)
+.......=.+-+..+|+.||+.|.....+
T Consensus 89 ~~f~~~~~~~l~lF~Dg~riDl~l~~~~~l 118 (287)
T 3jz0_A 89 MLYKNEYGTEVVIFDNLIRGEFHFLSEKDM 118 (287)
T ss_dssp EEEECTTSCEEEEETTSCEEEEEEEEGGGG
T ss_pred eEeecccceEEEEecCCcEEEEEEeeHHHH
Confidence 111111111122334799999998765443
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=83.42 E-value=14 Score=38.93 Aligned_cols=112 Identities=14% Similarity=0.044 Sum_probs=64.3
Q ss_pred HHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc-----hHHHHHHHHHHHHhcCCCCceeEeEEEEe-ece
Q 006140 76 YIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-----EEDLARFVCKILENEDQDSVFEIKDVQYV-PAQ 148 (659)
Q Consensus 76 ~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-----~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~Ar 148 (659)
.|.+.++... +.++.+-|||+-|-.. .+|||+++..+... ...+...|.+.|.+... +.++... ..+
T Consensus 161 ~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~-----v~~~l~~g~~k 234 (335)
T 2fmp_A 161 IVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHF-----ITDTLSKGETK 234 (335)
T ss_dssp HHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTS-----EEEEEEECSSE
T ss_pred HHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCc-----ceeeeecCCce
Confidence 3333343333 6899999999998876 57999999987321 12456667777777552 3433222 444
Q ss_pred eeEE-Eeee-------CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 006140 149 VKIV-KCSV-------QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCY 202 (659)
Q Consensus 149 VPII-K~~~-------~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak 202 (659)
.=+| ++.. .++.|||-+........+ +.-+-+. +..-+-|+.||+
T Consensus 235 ~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~~~~a-----Ll~fTGS----~~fnr~lR~~A~ 287 (335)
T 2fmp_A 235 FMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCG-----VLYFTGS----DIFNKNMRAHAL 287 (335)
T ss_dssp EEEEECCCCCTTCCCCCCEEEEEEECCGGGHHHH-----HHHHHCC----HHHHHHHHHHHH
T ss_pred EEEEEEeCCcccccCCCceEEEEEEECHHHHHHH-----HHHhhCC----HHHHHHHHHHHH
Confidence 4333 2222 279999987654332222 2222332 122356777887
No 22
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=74.30 E-value=28 Score=36.53 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc-hHHHHHHHHHHHHhcCCCCceeEeEEEEee---c-
Q 006140 74 INYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EEDLARFVCKILENEDQDSVFEIKDVQYVP---A- 147 (659)
Q Consensus 74 i~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~~~~~v~~iL~~~~~~~~~~V~~V~vI~---A- 147 (659)
.+.|.+.++... ++++.+-|||+-|-.. .+|||+++..+... ...++..|.+.|.+... +.++-... .
T Consensus 156 a~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~-----i~~~l~~~~~~g~ 229 (335)
T 2bcq_A 156 EQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQEGF-----LTDDLVSQEENGQ 229 (335)
T ss_dssp HHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHTTC-----EEEEEECCTTSTT
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhCCc-----hHHHhhccccCCC
Confidence 334444444433 6899999999998876 57999999977532 33456667777777552 33321110 1
Q ss_pred eeeEE---Eeee---CCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 006140 148 QVKIV---KCSV---QNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYY 203 (659)
Q Consensus 148 rVPII---K~~~---~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~ 203 (659)
.-..+ ++.. .++.|||-+........+ +.-+-+. +..-+-|+.||+.
T Consensus 230 ~~k~~~v~~l~~~~~~~~rVDl~~vp~~~~g~A-----Ll~fTGS----~~fnr~lR~~A~~ 282 (335)
T 2bcq_A 230 QQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACA-----LLYFTGS----AHFNRSMRALAKT 282 (335)
T ss_dssp CCEEEEEECCSSTTCCCEEEEEEECCGGGHHHH-----HHHHHCC----HHHHHHHHHHHHH
T ss_pred CceEEEEEEccCCCCCceEEEEEEECHHHHHHH-----HHHhhCC----HHHHHHHHHHHHH
Confidence 11221 2221 579999987654332222 2122332 2234567888873
No 23
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=67.38 E-value=32 Score=32.57 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhc--CCceeEeccccc---CCCCCCCcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEE
Q 006140 70 RKEVINYIQRLINGYY--GIEVFPFGSVPL---KTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQY 144 (659)
Q Consensus 70 R~~Vi~~L~~lI~~~~--~~~V~~FGS~~t---Gl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~v 144 (659)
|+.+...|++++..+- +..-...||++. |+-...-||||++. .+-...+.++|.... .+....
T Consensus 15 ~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~------~~da~~~~~~L~~~g------~~~~~~ 82 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTD------EEGAYEIERIFSEFV------SXXVRF 82 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEEC------HHHHHHHHHHTGGGE------EEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEec------ccCHHHHHHHHHHHh------hcccCC
Confidence 4555566666665443 788899999976 66667799999993 222456667776532 222211
Q ss_pred e-ecee-e-EEEeeeCCeeEEEee
Q 006140 145 V-PAQV-K-IVKCSVQNIPVDISF 165 (659)
Q Consensus 145 I-~ArV-P-IIK~~~~gI~VDISf 165 (659)
. .... . +..+.+.++.|||..
T Consensus 83 ~~~~~~~~~f~~~~i~~v~VDlm~ 106 (169)
T 2fcl_A 83 SSTEXICSHFGELIIDGIXVEIMG 106 (169)
T ss_dssp EECSSEEEEEEEEEETTEEEEEEE
T ss_pred CccccccceeeEEeeCCEEEEeee
Confidence 1 1211 1 234455788888873
No 24
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=46.59 E-value=2e+02 Score=32.07 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=58.2
Q ss_pred HHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcchHHHHHHHHHHHHhcCCCCceeEeEEEEe-eceeeEEE
Q 006140 76 YIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILENEDQDSVFEIKDVQYV-PAQVKIVK 153 (659)
Q Consensus 76 ~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~~~~~~~~~V~~V~vI-~ArVPIIK 153 (659)
.|.+.++..- ..++.+-|||+-|--+ .+|||+++..+.. + .|.+.|.+.+. +.++..- ..++-+ +
T Consensus 169 ~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~--~----~v~~~l~~~~~-----~~~~~~~g~~k~~~-~ 235 (575)
T 3b0x_A 169 SLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASREG--E----RAVEGFVRLPQ-----VKEVYAKGKERATV-F 235 (575)
T ss_dssp HHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSSH--H----HHHHHHHTSTT-----EEEEEEECSSEEEE-E
T ss_pred HHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCCH--H----HHHHHHHhCcc-----hhhHhhcCCCceEE-E
Confidence 3333343333 5789999999998766 4699999998752 1 34455555442 3333211 233222 1
Q ss_pred eeeCCeeEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 006140 154 CSVQNIPVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCY 202 (659)
Q Consensus 154 ~~~~gI~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak 202 (659)
...|+.|||-+........+ +.-+-+. +..-+-++.||+
T Consensus 236 -~~~~~rvDl~~~~~~~~~~a-----l~~~TGs----~~~n~~lR~~A~ 274 (575)
T 3b0x_A 236 -LKNGLQVDLRVVPPESYGAG-----LQYLTGS----AAHSIRLRALAQ 274 (575)
T ss_dssp -ETTSCEEEEEEECGGGHHHH-----HHHHHCC----HHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEECHHHHHHH-----HHHhhCC----HHHHHHHHHHHH
Confidence 12689999987654332222 1122332 223456788887
No 25
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=45.68 E-value=22 Score=34.05 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=53.8
Q ss_pred CCceeEecccccCCCCCCCcceEEEecCCcchHHHHHHHHHHHHh--cCCCCceeEe-EEEEe-eceeeEEEeee--CCe
Q 006140 86 GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNVEEDLARFVCKILEN--EDQDSVFEIK-DVQYV-PAQVKIVKCSV--QNI 159 (659)
Q Consensus 86 ~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l~e~~~~~v~~iL~~--~~~~~~~~V~-~V~vI-~ArVPIIK~~~--~gI 159 (659)
++++.+-||++-|-..- +|||+++..+.. ..|.+.|.+ .+ .+. ++..- ..++=+ ++.. .++
T Consensus 31 g~~v~iaGS~RRgket~-gDiDiLit~~~~------~~v~~~L~~~~~~-----~v~~~~l~~g~~k~~~-~l~~~~~~~ 97 (174)
T 1jaj_A 31 SKNIVAVGSLRREEKML-NDVDLLIIVPEK------KLLKHVLPNIRIK-----GLSFSVKVCGERKCVL-FIEWEKKTY 97 (174)
T ss_dssp TTTEEEEEHHHHTCSEE-CCEEEEEEESSH------HHHHTSSSEEEES-----SCEEEEEEETTTEEEE-EEESSSCCE
T ss_pred CcEEEEeccccCCCCCC-CCEEEEEecCCH------HHHHHHHHhccCC-----ceeHhHeecCCCeEEE-EeCCCCCce
Confidence 78999999999988764 599999998751 233344444 33 122 22111 233222 2222 689
Q ss_pred eEEEeeecccccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 006140 160 PVDISFNQMAGLSALCFLEKVDRLIGKDHLFKRSVILIKAWCYY 203 (659)
Q Consensus 160 ~VDISfnn~~gi~~s~~L~~id~lv~~~p~fr~Lv~lIK~Wak~ 203 (659)
.|||-+........+ ++ -+-+. +...+-+..||+.
T Consensus 98 rVDl~~vp~~~fg~A-Ll----~fTGS----k~hn~~lR~~A~~ 132 (174)
T 1jaj_A 98 QLDLFTALAEEKPYA-IF----HFTGP----VSYLIRIRAALKK 132 (174)
T ss_dssp EEEEEEEETTCHHHH-HH----HHHSC----HHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHHHH-HH----HhHCC----HHHHHHHHHHHHH
Confidence 999988654433322 11 12232 1223557778873
No 26
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=45.59 E-value=20 Score=37.99 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCc-chHHHHHHHHHHHHhcC
Q 006140 75 NYIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQN-VEEDLARFVCKILENED 132 (659)
Q Consensus 75 ~~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~-l~e~~~~~v~~iL~~~~ 132 (659)
+.|.+.++... +++|.+-|||+-|--. .+|||++|..+.. ....++..|.+.|.+..
T Consensus 164 ~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~~~ 222 (360)
T 2ihm_A 164 QLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQSQG 222 (360)
T ss_dssp HHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHhCC
Confidence 33444444333 6899999999999876 5799999998753 23456667777777654
No 27
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=40.23 E-value=49 Score=35.36 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHHHHHHhhc-CCceeEecccccCCCCCCCcceEEEecCCcc-hHH--HHHHHHHHHHhcC
Q 006140 76 YIQRLINGYY-GIEVFPFGSVPLKTYLPDGDIDLTVLGHQNV-EED--LARFVCKILENED 132 (659)
Q Consensus 76 ~L~~lI~~~~-~~~V~~FGS~~tGl~lp~SDIDl~v~~p~~l-~e~--~~~~v~~iL~~~~ 132 (659)
.|.+.++... +.+|.+-|||+-|--. .+|||++|..+..- ... ++..|.+.|.+..
T Consensus 185 ~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~ 244 (381)
T 1jms_A 185 LVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQG 244 (381)
T ss_dssp HHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCC
Confidence 3333333333 6899999999999877 56999999987543 222 5666777777654
No 28
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=35.51 E-value=22 Score=36.60 Aligned_cols=43 Identities=14% Similarity=-0.036 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcC-CceeEecccccCC--CCCCCcceEEEecCC
Q 006140 72 EVINYIQRLINGYYG-IEVFPFGSVPLKT--YLPDGDIDLTVLGHQ 114 (659)
Q Consensus 72 ~Vi~~L~~lI~~~~~-~~V~~FGS~~tGl--~lp~SDIDl~v~~p~ 114 (659)
++++.|.+..+.--. ..|...||.+++- .-.-||+||++++..
T Consensus 8 em~~~i~~~a~~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALNDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 466666666554332 3578999999976 445599999999874
No 29
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=31.23 E-value=40 Score=36.37 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=35.3
Q ss_pred HhcCCCHHHHHHHHH---HHHHHHHHHHhhc---CCceeEecccccCCCCCC---CcceEEEecC
Q 006140 58 CTIQPAIVSEKKRKE---VINYIQRLINGYY---GIEVFPFGSVPLKTYLPD---GDIDLTVLGH 113 (659)
Q Consensus 58 e~I~PT~eE~~~R~~---Vi~~L~~lI~~~~---~~~V~~FGS~~tGl~lp~---SDIDl~v~~p 113 (659)
.-.+|++.+...|.. ++..+.+++++.+ +-.+..||||.+-+--|+ +|||++=...
T Consensus 146 nv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqTNa 210 (479)
T 3er9_B 146 NVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNS 210 (479)
T ss_dssp CCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEESSH
T ss_pred ccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeeecc
Confidence 445565544445544 4778888888776 788999999999887776 9999986543
No 30
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=21.56 E-value=74 Score=34.48 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=24.4
Q ss_pred CceeEecccccCCCCCCCcceEEEecC
Q 006140 87 IEVFPFGSVPLKTYLPDGDIDLTVLGH 113 (659)
Q Consensus 87 ~~V~~FGS~~tGl~lp~SDIDl~v~~p 113 (659)
..|..+||+.-+=-.+.||||++++.+
T Consensus 155 ~aviamGk~Gr~EL~~~SDiDli~l~~ 181 (440)
T 1v4a_A 155 LLILGMGKLGGGELNFSSDIDLIFAWP 181 (440)
T ss_dssp CEEEECHHHHTTCCCSSCCEEEEEEEC
T ss_pred EEEEEeccccccCcCCCCCcceEEEeC
Confidence 568899999999999999999999865
Done!