Query 006141
Match_columns 659
No_of_seqs 393 out of 2365
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 9E-110 2E-114 943.0 46.6 619 30-654 15-650 (665)
2 TIGR00815 sulP high affinity s 100.0 4E-101 1E-105 869.3 59.4 560 79-643 1-563 (563)
3 COG0659 SUL1 Sulfate permease 100.0 5.9E-92 1.3E-96 781.4 56.3 547 74-652 3-552 (554)
4 PRK11660 putative transporter; 100.0 1.3E-91 2.7E-96 792.3 57.3 524 82-650 19-566 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 3.1E-48 6.7E-53 403.5 17.0 279 191-469 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 1.1E-26 2.4E-31 253.6 34.7 330 102-474 10-363 (406)
7 PRK10720 uracil transporter; P 100.0 4.9E-26 1.1E-30 248.4 31.6 357 102-505 29-414 (428)
8 COG2252 Xanthine/uracil/vitami 100.0 1.4E-25 3E-30 237.3 32.3 373 88-499 15-406 (436)
9 TIGR00801 ncs2 uracil-xanthine 99.9 1.2E-25 2.6E-30 245.3 31.3 327 100-464 18-366 (415)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.5E-25 3.3E-30 186.1 7.4 83 78-160 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 3.5E-22 7.5E-27 218.1 33.1 328 92-459 29-372 (429)
12 COG2233 UraA Xanthine/uracil p 99.9 5.9E-21 1.3E-25 203.9 21.4 326 101-462 30-375 (451)
13 PRK11412 putative uracil/xanth 99.9 1.4E-19 3E-24 196.4 31.8 340 101-470 22-380 (433)
14 PF00860 Xan_ur_permease: Perm 99.8 7.8E-19 1.7E-23 190.7 30.7 340 94-464 2-364 (389)
15 PF01740 STAS: STAS domain; I 99.8 7.6E-19 1.7E-23 158.1 7.0 117 524-643 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 1.3E-16 2.9E-21 140.8 10.0 103 528-644 4-106 (106)
17 cd07041 STAS_RsbR_RsbS_like Su 99.7 3E-16 6.5E-21 139.3 10.3 103 529-644 7-109 (109)
18 TIGR00834 ae anion exchange pr 99.6 8.1E-13 1.7E-17 152.3 33.7 351 94-452 370-791 (900)
19 TIGR00843 benE benzoate transp 99.6 5.3E-13 1.2E-17 141.8 29.8 344 94-493 22-392 (395)
20 cd06844 STAS Sulphate Transpor 99.6 3.4E-15 7.4E-20 130.4 9.9 93 528-631 4-96 (100)
21 KOG1172 Na+-independent Cl/HCO 99.5 1.4E-11 2.9E-16 138.6 30.9 339 105-452 372-767 (876)
22 TIGR00377 ant_ant_sig anti-ant 99.4 2.9E-13 6.3E-18 119.8 8.9 101 528-642 8-108 (108)
23 PF03594 BenE: Benzoate membra 99.4 1.7E-10 3.6E-15 120.7 30.4 344 95-494 7-377 (378)
24 cd07042 STAS_SulP_like_sulfate 99.4 1.1E-12 2.5E-17 115.4 11.4 101 528-638 5-105 (107)
25 cd07043 STAS_anti-anti-sigma_f 99.3 1.6E-11 3.5E-16 106.4 10.2 90 530-631 6-95 (99)
26 COG1366 SpoIIAA Anti-anti-sigm 99.2 5.1E-11 1.1E-15 107.1 10.7 98 534-645 15-112 (117)
27 PF00955 HCO3_cotransp: HCO3- 99.1 2E-11 4.4E-16 134.1 1.0 348 98-453 38-473 (510)
28 KOG1292 Xanthine/uracil transp 99.1 1.1E-08 2.3E-13 109.0 20.5 316 104-451 29-390 (510)
29 PF13466 STAS_2: STAS domain 99.0 6.4E-10 1.4E-14 92.7 8.0 79 536-627 1-79 (80)
30 COG3135 BenE Uncharacterized p 98.9 4.4E-07 9.6E-12 93.1 22.5 276 174-494 102-392 (402)
31 PF11840 DUF3360: Protein of u 98.2 0.00027 5.8E-09 73.2 20.8 255 178-465 145-418 (492)
32 COG3113 Predicted NTP binding 97.5 0.00031 6.6E-09 59.3 7.2 84 535-631 13-96 (99)
33 TIGR00815 sulP high affinity s 92.5 7.1 0.00015 44.9 18.7 111 335-451 14-142 (563)
34 PF11964 SpoIIAA-like: SpoIIAA 91.8 0.099 2.2E-06 45.7 2.0 106 532-649 1-109 (109)
35 PRK10720 uracil transporter; P 91.5 0.96 2.1E-05 50.1 9.8 60 373-436 261-320 (428)
36 TIGR03173 pbuX xanthine permea 90.3 11 0.00024 41.3 16.7 111 100-227 225-345 (406)
37 PRK09928 choline transport pro 90.3 15 0.00033 42.6 18.0 48 549-612 528-575 (679)
38 PF13344 Hydrolase_6: Haloacid 89.8 0.59 1.3E-05 40.6 5.0 72 576-650 1-77 (101)
39 TIGR00801 ncs2 uracil-xanthine 89.3 7.9 0.00017 42.7 14.6 117 96-229 236-363 (415)
40 PF14213 DUF4325: Domain of un 89.1 1.7 3.6E-05 35.4 6.8 66 546-623 2-70 (74)
41 COG0659 SUL1 Sulfate permease 87.4 9 0.0002 43.8 13.7 107 339-451 25-143 (554)
42 COG2233 UraA Xanthine/uracil p 86.7 2.1 4.6E-05 47.0 7.8 60 345-404 257-328 (451)
43 COG5439 Uncharacterized conser 82.0 2.8 6.1E-05 35.2 4.7 43 573-615 46-89 (112)
44 KOG3040 Predicted sugar phosph 81.5 2.1 4.6E-05 41.7 4.4 75 572-649 6-85 (262)
45 PF00860 Xan_ur_permease: Perm 77.8 6.2 0.00013 43.1 7.3 20 435-454 343-362 (389)
46 PRK11660 putative transporter; 76.4 37 0.00081 39.1 13.5 168 328-497 275-445 (568)
47 PF09345 DUF1987: Domain of un 75.9 8.6 0.00019 33.3 6.1 72 532-611 8-82 (99)
48 PRK11412 putative uracil/xanth 73.6 18 0.0004 40.0 9.6 54 371-424 274-327 (433)
49 KOG2882 p-Nitrophenyl phosphat 73.5 9.4 0.0002 39.5 6.7 77 573-651 22-103 (306)
50 TIGR03616 RutG pyrimidine util 69.4 33 0.00071 38.0 10.4 109 100-226 253-371 (429)
51 PRK02261 methylaspartate mutas 65.9 53 0.0011 30.2 9.4 73 572-653 54-136 (137)
52 TIGR01452 PGP_euk phosphoglyco 65.1 9.7 0.00021 39.4 5.0 74 573-649 2-80 (279)
53 PRK10444 UMP phosphatase; Prov 62.9 14 0.0003 37.6 5.6 73 574-649 2-79 (248)
54 TIGR00843 benE benzoate transp 62.0 1.3E+02 0.0029 32.8 13.0 104 338-444 23-143 (395)
55 TIGR01684 viral_ppase viral ph 56.3 29 0.00063 36.1 6.5 60 571-631 124-189 (301)
56 TIGR01457 HAD-SF-IIA-hyp2 HAD- 56.1 22 0.00048 36.1 5.7 74 574-650 2-80 (249)
57 PF00916 Sulfate_transp: Sulfa 55.9 92 0.002 31.9 10.4 169 259-428 73-243 (280)
58 TIGR01458 HAD-SF-IIA-hyp3 HAD- 55.2 20 0.00044 36.6 5.3 74 573-649 1-83 (257)
59 PLN02645 phosphoglycolate phos 53.5 45 0.00097 35.1 7.7 73 573-648 28-105 (311)
60 PF13788 DUF4180: Domain of un 52.6 1.6E+02 0.0035 26.1 9.6 100 531-646 4-112 (113)
61 TIGR00822 EII-Sor PTS system, 50.8 1.1E+02 0.0024 31.5 9.6 128 91-219 41-189 (265)
62 COG4618 ArpD ABC-type protease 49.2 52 0.0011 36.8 7.3 76 571-649 489-564 (580)
63 PRK11778 putative inner membra 49.1 1.4E+02 0.0029 31.9 10.2 70 530-610 89-159 (330)
64 PF05884 ZYG-11_interact: Inte 48.7 2.7E+02 0.0058 29.1 11.8 137 80-221 118-262 (299)
65 COG0647 NagD Predicted sugar p 48.4 44 0.00096 34.5 6.4 78 573-652 8-90 (269)
66 TIGR01459 HAD-SF-IIA-hyp4 HAD- 45.9 60 0.0013 32.6 7.0 74 572-648 7-85 (242)
67 cd07019 S49_SppA_1 Signal pept 45.8 1.1E+02 0.0024 30.1 8.7 69 532-611 1-76 (211)
68 PF03609 EII-Sor: PTS system s 44.6 1.7E+02 0.0037 29.6 9.9 127 91-218 41-189 (238)
69 cd02071 MM_CoA_mut_B12_BD meth 43.5 83 0.0018 28.0 6.7 68 572-648 50-121 (122)
70 cd07023 S49_Sppa_N_C Signal pe 43.2 1.1E+02 0.0024 30.0 8.2 66 533-609 2-70 (208)
71 TIGR01501 MthylAspMutase methy 41.6 56 0.0012 29.9 5.3 61 588-652 63-133 (134)
72 TIGR00640 acid_CoA_mut_C methy 40.9 69 0.0015 29.2 5.8 69 573-650 54-126 (132)
73 TIGR00706 SppA_dom signal pept 40.8 1.3E+02 0.0027 29.6 8.2 58 533-602 2-59 (207)
74 COG1296 AzlC Predicted branche 40.5 55 0.0012 33.1 5.5 45 89-136 9-56 (238)
75 PRK09757 PTS system N-acetylga 40.3 2.1E+02 0.0046 29.5 9.8 27 192-218 163-189 (267)
76 COG1137 YhbG ABC-type (unclass 39.0 1.1E+02 0.0024 30.2 7.0 51 572-625 157-207 (243)
77 PHA00736 hypothetical protein 38.7 1.6E+02 0.0035 23.1 6.4 68 110-187 4-72 (79)
78 cd00394 Clp_protease_like Case 38.3 65 0.0014 30.0 5.5 57 535-602 1-57 (161)
79 cd07022 S49_Sppa_36K_type Sign 37.5 1.4E+02 0.003 29.5 7.9 37 571-609 41-77 (214)
80 PHA03398 viral phosphatase sup 37.1 85 0.0019 32.8 6.3 60 571-631 126-191 (303)
81 PRK15083 PTS system mannitol-s 34.8 5.9E+02 0.013 29.8 13.6 22 72-96 55-77 (639)
82 COG3715 ManY Phosphotransferas 34.6 2.5E+02 0.0053 28.9 9.0 64 368-432 51-114 (265)
83 COG1121 ZnuC ABC-type Mn/Zn tr 34.2 1.2E+02 0.0026 31.0 6.8 51 571-622 156-207 (254)
84 PRK15065 PTS system mannose-sp 34.0 3.4E+02 0.0074 27.9 10.1 27 192-218 163-189 (262)
85 PLN03211 ABC transporter G-25; 32.4 1.7E+02 0.0036 34.5 8.6 76 572-650 224-301 (659)
86 PRK03659 glutathione-regulated 31.4 6.7E+02 0.015 29.1 13.3 78 545-648 406-483 (601)
87 PF04206 MtrE: Tetrahydrometha 30.9 4.3E+02 0.0092 26.6 9.6 89 116-220 51-143 (269)
88 cd07021 Clp_protease_NfeD_like 30.9 86 0.0019 30.2 5.0 47 533-590 1-47 (178)
89 cd03412 CbiK_N Anaerobic cobal 30.1 1.9E+02 0.0042 25.9 6.9 54 587-649 12-67 (127)
90 PRK11475 DNA-binding transcrip 29.4 1.4E+02 0.0031 29.3 6.4 58 573-633 38-98 (207)
91 KOG0236 Sulfate/bicarbonate/ox 29.3 1E+03 0.022 28.1 14.3 121 80-218 311-440 (665)
92 KOG1292 Xanthine/uracil transp 28.9 2.1E+02 0.0046 31.9 7.9 113 81-213 260-384 (510)
93 COG1433 Uncharacterized conser 28.6 1.5E+02 0.0033 26.6 5.7 50 596-649 56-106 (121)
94 PRK04125 murein hydrolase regu 28.4 66 0.0014 29.7 3.5 15 283-297 31-45 (141)
95 PRK00972 tetrahydromethanopter 27.6 6E+02 0.013 25.9 10.1 89 116-221 58-150 (292)
96 COG0053 MMT1 Predicted Co/Zn/C 27.5 7.4E+02 0.016 26.0 12.1 28 534-561 249-276 (304)
97 TIGR01113 mtrE N5-methyltetrah 27.1 6.2E+02 0.014 25.7 10.0 89 116-220 51-143 (283)
98 cd02067 B12-binding B12 bindin 26.9 4.1E+02 0.0088 23.1 8.4 65 572-648 50-118 (119)
99 PRK04596 minC septum formation 26.9 2.6E+02 0.0057 28.4 7.7 75 545-628 28-103 (248)
100 TIGR00955 3a01204 The Eye Pigm 26.7 2.1E+02 0.0046 33.3 8.2 76 572-650 184-261 (617)
101 TIGR00210 gltS sodium--glutama 26.6 1.3E+02 0.0028 33.0 5.9 39 182-220 9-51 (398)
102 TIGR01460 HAD-SF-IIA Haloacid 26.4 1.1E+02 0.0024 30.6 5.2 72 576-650 1-78 (236)
103 KOG0061 Transporter, ABC super 26.3 4.6E+02 0.0099 30.6 10.8 75 572-649 188-264 (613)
104 PF03956 DUF340: Membrane prot 25.1 1.2E+02 0.0026 29.6 4.8 57 432-488 23-80 (191)
105 COG1030 NfeD Membrane-bound se 24.8 1.3E+02 0.0027 33.2 5.4 65 530-609 25-89 (436)
106 PF03616 Glt_symporter: Sodium 24.4 6.5E+02 0.014 27.2 10.8 38 266-303 14-51 (368)
107 PF10337 DUF2422: Protein of u 23.7 1E+03 0.022 26.4 13.2 76 411-497 135-213 (459)
108 COG4152 ABC-type uncharacteriz 23.4 2.2E+02 0.0047 29.2 6.3 43 571-614 147-189 (300)
109 PF08496 Peptidase_S49_N: Pept 23.1 2.9E+02 0.0062 26.0 6.7 108 465-596 5-119 (155)
110 TIGR02230 ATPase_gene1 F0F1-AT 22.8 1.6E+02 0.0034 25.6 4.5 41 260-300 52-92 (100)
111 cd03238 ABC_UvrA The excision 22.7 2.8E+02 0.0061 26.5 6.9 46 573-619 108-153 (176)
112 PF04156 IncA: IncA protein; 22.7 2.7E+02 0.0058 26.7 6.9 51 178-228 8-61 (191)
113 COG0786 GltS Na+/glutamate sym 22.6 1E+03 0.022 26.0 12.0 47 385-433 134-182 (404)
114 TIGR01686 FkbH FkbH-like domai 22.6 1.5E+02 0.0033 31.2 5.5 52 572-623 2-67 (320)
115 cd06207 CyPoR_like NADPH cytoc 22.5 3.4E+02 0.0073 29.4 8.3 47 596-649 320-370 (382)
116 COG2450 Uncharacterized conser 22.4 2.5E+02 0.0054 25.3 5.8 40 573-612 64-103 (124)
117 PRK04516 minC septum formation 22.2 3E+02 0.0064 27.8 7.0 71 545-625 25-96 (235)
118 COG1269 NtpI Archaeal/vacuolar 22.1 4.6E+02 0.01 30.9 9.8 120 90-220 373-500 (660)
119 TIGR02717 AcCoA-syn-alpha acet 21.7 6.8E+02 0.015 27.8 10.7 92 538-650 343-443 (447)
120 COG0573 PstC ABC-type phosphat 21.0 1.5E+02 0.0033 31.2 4.9 61 80-140 63-139 (310)
121 PF00072 Response_reg: Respons 20.8 4.1E+02 0.0089 22.0 7.1 55 572-632 43-99 (112)
122 COG4129 Predicted membrane pro 20.7 2.8E+02 0.006 29.6 6.9 51 404-460 8-58 (332)
123 COG1131 CcmA ABC-type multidru 20.7 2.7E+02 0.0058 29.0 6.8 54 571-625 153-208 (293)
124 cd03269 ABC_putative_ATPase Th 20.3 3.4E+02 0.0073 26.3 7.2 46 572-618 146-191 (210)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-110 Score=942.99 Aligned_cols=619 Identities=39% Similarity=0.676 Sum_probs=549.9
Q ss_pred eeecCCCCCchHHHHHHhhhhccCCCCccccccCCC--chhHHHHHhhhhccccCcCCCCCh-hhhhhhHHHHHHHHHHH
Q 006141 30 HRVVPPPHKSTIEKLKRRLKETFFPDDPLRQFKGQP--LGKKWILAAQYIFPILEWGPNYSF-KLFKSDIISGLTIASLA 106 (659)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~w~~~y~~-~~l~~Di~aGltv~~~~ 106 (659)
+.++.|+.++..+..++..+++.+++++.++++++. ++.++.+.+++++|+++|+|+|++ +|+.+|++||+|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~ 94 (665)
T KOG0236|consen 15 ASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLS 94 (665)
T ss_pred ccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeee
Confidence 344455555555555555666555566666666554 456789999999999999999999 99999999999999999
Q ss_pred HhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCC---ChhhHHHHHHHHHHH
Q 006141 107 IPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQ---NPVLFLQLAFTATFF 183 (659)
Q Consensus 107 iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~a~~~t~l 183 (659)
+||+||||.+||+||+|||||+|+|+++|++||+|||+++||+|++|+|+++++.+.+++.. ++..+++++.++||+
T Consensus 95 VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l 174 (665)
T KOG0236|consen 95 VPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFL 174 (665)
T ss_pred cchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988887655433 456789999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHH---HHHhhcCcchHHHHHH
Q 006141 184 GGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMS---SVFHNTKEWSWQTILM 260 (659)
Q Consensus 184 ~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i 260 (659)
+|++|++||+||||++++|+|+|++.||++|+|++++.+|+|.++|+++++.+.+....+. +.+.+.++. +.++++
T Consensus 175 ~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (665)
T KOG0236|consen 175 TGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKT-LATLVL 253 (665)
T ss_pred HHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhccccc-chhhhh
Confidence 9999999999999999999999999999999999999999999999986666555544433 344444444 788999
Q ss_pred HHHHHHHHHHHhh-hhccCCCccccccchhHHHHHHHHHHHHHhhccC-CCceeeeccccCCCCCCccccccchhhHHHH
Q 006141 261 GFCFLVFLLLTRH-VGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQH-HGISVIGKLQEGLNPPSWNMLKFHGSHLGLV 338 (659)
Q Consensus 261 g~~~l~~l~~~~~-~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~-~~v~~vg~ip~gl~~p~~~~~~~~~~~~~~~ 338 (659)
+++++++++..|. ..++.++.+|+|+|.++++++++|+++|.++.+. +...+++++|+|+|+|++|.+++.. ..
T Consensus 254 ~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~~ 329 (665)
T KOG0236|consen 254 SLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----QV 329 (665)
T ss_pred HHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----HH
Confidence 9999999999995 4444556666999999999999999999999876 4556667999999999999887654 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHH
Q 006141 339 MKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSV 418 (659)
Q Consensus 339 ~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~ 418 (659)
+..++.+++++++|+++++|+++++++|++|+||||+|+|++|++||||+|+|+|++++||++|.++|+|||++++++++
T Consensus 330 ~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~~ 409 (665)
T KOG0236|consen 330 IPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSAA 409 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHHH
Confidence 66677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHhhhchhHHHHHHHHHHhh-cCChhHHHHHhcCCchhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 006141 419 TVMVTLLFLMPLFQYTPNVVLGAIIVTAVVG-LIDVPAAHQIWKIDKFDFLVMLCAFLGVVFISVQEGLAIAVGISIFKI 497 (659)
Q Consensus 419 ~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl~~gv~~s~~~~ 497 (659)
++++++++++|+|+|+|+|+||+|+++++.+ +++.++++.+||.+|.|+++|++|++++++.++++|+++|+++|++.+
T Consensus 410 ~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~i 489 (665)
T KOG0236|consen 410 LVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFFI 489 (665)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 569999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCceeeecccCCCcccccccccccccccCcEEEEEeccceEEecchHHHHHHH--HHHHHH---HhHhhhccCCC
Q 006141 498 LLQITRPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILSIEAPINFANTTYLNERIL--RWIEEY---EAEENLNKQSS 572 (659)
Q Consensus 498 ~~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~--~~i~~~---~~~~~~~~~~~ 572 (659)
++|++||+...+|++++++.|++.++|+++.+.++++|+|+++|++|.|.+.+++++. +++++. ++..++.+.++
T Consensus 490 i~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (665)
T KOG0236|consen 490 ILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHENS 569 (665)
T ss_pred HHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccCc
Confidence 9999999999999999999999999999999999999999999999999999998873 454442 11111112224
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhhhc
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTIK 652 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~~ 652 (659)
.+++|+||++++++|++|+.+|+++.+++++++++++++|+++++++.|++++ +.+.++++++|+|++||++.|+.+.+
T Consensus 570 ~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~-~~~~~~~~~~f~tv~~av~~~~~~~~ 648 (665)
T KOG0236|consen 570 IHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAG-FFDFIGKDNLFLSVHDAVLDAVSELS 648 (665)
T ss_pred ceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhc-cccccchhhhhccHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999 77899999999999999999998776
Q ss_pred cC
Q 006141 653 AP 654 (659)
Q Consensus 653 ~~ 654 (659)
..
T Consensus 649 ~~ 650 (665)
T KOG0236|consen 649 RG 650 (665)
T ss_pred cc
Confidence 43
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=4.4e-101 Score=869.32 Aligned_cols=560 Identities=41% Similarity=0.731 Sum_probs=522.4
Q ss_pred cccCcCCCCChhhhhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHH
Q 006141 79 PILEWGPNYSFKLFKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGS 158 (659)
Q Consensus 79 P~~~w~~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~ 158 (659)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++|+++|++||+||++++||++++|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCC
Q 006141 159 MLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMG 238 (659)
Q Consensus 159 ~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~ 238 (659)
++.+...+...+..+.+++.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..++..+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99987644433346788999999999999999999999999999999999999999999999999999999975334457
Q ss_pred hHHHHHHHHhhcCcc---hHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeec
Q 006141 239 LIPVMSSVFHNTKEW---SWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGK 315 (659)
Q Consensus 239 ~~~~~~~~~~~~~~~---~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ 315 (659)
+++.+.+.+.+++++ ||.+++++++++++++..+++.+|++++.+.++|.+++++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 788888888887666 99999999999999999998888888877778889999999999999998888889999999
Q ss_pred cccCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCccccccc
Q 006141 316 LQEGLNPPSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGA 395 (659)
Q Consensus 316 ip~gl~~p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s 395 (659)
+|.|+|.+.+|. +++..+...++.++.+++++++|++++++++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~--~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPIT--LDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 999997666654 456678889999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCchhHHHHHHHhh
Q 006141 396 FSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKFDFLVMLCAFL 475 (659)
Q Consensus 396 ~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~~t~~ 475 (659)
++||++|.++|+|||++++++++++++++++++|+++++|+++||+++++++++|+++++++++||.++.|+.+|++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhCCceeeecccCCCcccccccccccccccCcEEEEEeccceEEecchHHHHHHH
Q 006141 476 GVVFISVQEGLAIAVGISIFKILLQITRPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILSIEAPINFANTTYLNERIL 555 (659)
Q Consensus 476 ~~~~~~~~~Gl~~gv~~s~~~~~~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~ 555 (659)
+++++|++.|+++|+++|++.+++|++||+..++|++++++.|||.+++++.++.|+++++|++|+|+|+|+++|++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999998
Q ss_pred HHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCc
Q 006141 556 RWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDS 635 (659)
Q Consensus 556 ~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~ 635 (659)
+.++++.+ +++++++.+++|+||++|+++|+||+++|.++.++++++|+++.++++++++++.|+++| +.+.+++++
T Consensus 479 ~~~~~~~~--~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~g-l~~~~~~~~ 555 (563)
T TIGR00815 479 KRIEDETR--RELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGG-LVELIGEEH 555 (563)
T ss_pred HHHhhhcc--ccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCC-chhhcCCcc
Confidence 87664211 112233579999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccCHHHH
Q 006141 636 LYLTVGEA 643 (659)
Q Consensus 636 if~s~~~A 643 (659)
+|+|+|||
T Consensus 556 ~f~s~~~A 563 (563)
T TIGR00815 556 FFPSVSDA 563 (563)
T ss_pred eeCChhhC
Confidence 99999986
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-92 Score=781.37 Aligned_cols=547 Identities=31% Similarity=0.517 Sum_probs=513.1
Q ss_pred hhhhccccCcCCCCChhhhhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHH
Q 006141 74 AQYIFPILEWGPNYSFKLFKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIAS 153 (659)
Q Consensus 74 ~~~~~P~~~w~~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~s 153 (659)
+.+.+|..+|.+.|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||.+++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCcccc
Q 006141 154 LIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHF 233 (659)
Q Consensus 154 l~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~ 233 (659)
++++.++.+.. +.+++.++++++++|++|+++|++|||++++|+|+||+.||++|+|++|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998643 467899999999999999999999999999999999999999999999999999999999752
Q ss_pred CCCCChHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccC--CCce
Q 006141 234 TNQMGLIPVMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQH--HGIS 311 (659)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~--~~v~ 311 (659)
..++++.+..++++..++||.+++++++++++++.++++.+|+| +++++++++|.++|.+..+. +| +
T Consensus 157 --~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G-~ 225 (554)
T COG0659 157 --VSGFWAKVSALFTVLLTINLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG-E 225 (554)
T ss_pred --ccchHHHHHHHHHhcccccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-c
Confidence 23488888999999999999999999999999999987776665 78999999999999998763 66 7
Q ss_pred eeeccccCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCccc
Q 006141 312 VIGKLQEGLNPPSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYI 391 (659)
Q Consensus 312 ~vg~ip~gl~~p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p 391 (659)
+.|++|.++|.+.+|.++ .+.+.+.++.++.+++++++|++.++++++.++|+++|.||||+|+|++|++++||||+|
T Consensus 226 i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p 303 (554)
T COG0659 226 IPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIP 303 (554)
T ss_pred CcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCcc
Confidence 889999999888888765 567899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHH-hcCCchhHHHH
Q 006141 392 TTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQI-WKIDKFDFLVM 470 (659)
Q Consensus 392 ~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l-~~~~~~d~~v~ 470 (659)
+||+++||++|.++|+|||+|++++|+++++++++++|++++||+|+|++++++++++|+++..++.+ +|..|.|+.++
T Consensus 304 ~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~ 383 (554)
T COG0659 304 ATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVL 383 (554)
T ss_pred ccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999884 45899999999
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCceeeecccCCCcccccccccccccccCcEEEEEeccceEEecchHH
Q 006141 471 LCAFLGVVFISVQEGLAIAVGISIFKILLQITRPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILSIEAPINFANTTYL 550 (659)
Q Consensus 471 ~~t~~~~~~~~~~~Gl~~gv~~s~~~~~~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~ 550 (659)
+.|++++++.+++.|+.+|+++|++.+++|.+||+...+++.++.+. ++.++++..+..|++.++|++||++|+|++++
T Consensus 384 ~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~~ 462 (554)
T COG0659 384 LTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADRL 462 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHHH
Confidence 99999999999999999999999999999999999999999887765 67788888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccc
Q 006141 551 NERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDF 630 (659)
Q Consensus 551 ~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~ 630 (659)
++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+ ..+.
T Consensus 463 ~~~i~~~~~~-----------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~-~~~~ 530 (554)
T COG0659 463 ERALLGLIEE-----------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAG-LLYL 530 (554)
T ss_pred HHHHHHHHhc-----------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhc-cccc
Confidence 9999887653 378999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCccccCHHHHHHHHhhhhc
Q 006141 631 KRPDSLYLTVGEAVASLSSTIK 652 (659)
Q Consensus 631 ~~~~~if~s~~~Av~~~~~~~~ 652 (659)
.+++++|+++++|++.++...+
T Consensus 531 i~~~~~f~~~~~a~~~~~~~~~ 552 (554)
T COG0659 531 VGAEHIFDSVDSALEKARKLLA 552 (554)
T ss_pred cccccccchhHHHHHHHHHHhc
Confidence 9888999999999999886554
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.3e-91 Score=792.35 Aligned_cols=524 Identities=23% Similarity=0.369 Sum_probs=472.7
Q ss_pred CcCCCCChhhhhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHh
Q 006141 82 EWGPNYSFKLFKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLR 161 (659)
Q Consensus 82 ~w~~~y~~~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~ 161 (659)
+|+|+|+++++++|++||+|++++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.++++++..+.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHH
Q 006141 162 QEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIP 241 (659)
Q Consensus 162 ~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 241 (659)
+. ..+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...++++
T Consensus 99 ~~---------~~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QF---------GLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hh---------hHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 42 244566789999999999999999999999999999999999999999999999999975333457889
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeec------
Q 006141 242 VMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGK------ 315 (659)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~------ 315 (659)
.+.+++++++++||.++++|++++++++..+++.+|+| .++++++++|++++.++....+++.+|+
T Consensus 170 ~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~iP--------~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~~ 241 (568)
T PRK11660 170 KVGALFQALPTINWGDALIGIVTLGVLILWPRLKIRLP--------GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYVL 241 (568)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhcccCc--------hHHHHHHHHHHHHHHHhccCCCceeecccccccc
Confidence 99999999999999999999999999988776555443 7799999999999999876667777765
Q ss_pred --------cccCCCCCCccc---------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHh
Q 006141 316 --------LQEGLNPPSWNM---------LKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIG 378 (659)
Q Consensus 316 --------ip~gl~~p~~~~---------~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G 378 (659)
+|.++|++.+|. .++++..+.+.++.++.+++++++|++.+++.+++++++++|.||||+|+|
T Consensus 242 ~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G 321 (568)
T PRK11660 242 ADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQG 321 (568)
T ss_pred cccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHh
Confidence 666666555552 124667788889999999999999999999999999999999999999999
Q ss_pred HhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHH
Q 006141 379 VMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQ 458 (659)
Q Consensus 379 ~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~ 458 (659)
++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++++|+++||+++++++++|++.++.++
T Consensus 322 ~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~ 401 (568)
T PRK11660 322 LGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD 401 (568)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred Hhc-CCchhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCceeeecccCCCcccccccccccccccCcEEEEE
Q 006141 459 IWK-IDKFDFLVMLCAFLGVVFISVQEGLAIAVGISIFKILLQITRPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILS 537 (659)
Q Consensus 459 l~~-~~~~d~~v~~~t~~~~~~~~~~~Gl~~gv~~s~~~~~~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~r 537 (659)
+|| .++.|+.+|+.+++.+++++++.|+++|+++|++.+++|.+++. +.++ .++ .++.+++.++|
T Consensus 402 ~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~iv~ 467 (568)
T PRK11660 402 LLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLVLR 467 (568)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEEEE
Confidence 877 58899999999999999999999999999999999999998763 2221 111 34567999999
Q ss_pred eccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhH
Q 006141 538 IEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEV 617 (659)
Q Consensus 538 l~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v 617 (659)
++|+|||+|++++++++++.. ++.+++|+||++|++||+||+++|.++.+++++ |+++.++++++++
T Consensus 468 ~~g~L~F~n~~~l~~~l~~~~------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~~v 534 (568)
T PRK11660 468 INGPLFFAAAERLFTELESRT------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQFQP 534 (568)
T ss_pred eCCeeeeeeHHHHHHHHHhhC------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCChHH
Confidence 999999999999999886542 247899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcCCCccccCCCccccCHHHHHHHHhhh
Q 006141 618 LEKLQRSDDSGDFKRPDSLYLTVGEAVASLSST 650 (659)
Q Consensus 618 ~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~ 650 (659)
++.|+++| +.+..+.+++|+|.|||++++++.
T Consensus 535 ~~~l~~~g-l~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 535 LRTLARAG-IQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHHCC-ChhhcCcccccCCHHHHHHHHHhh
Confidence 99999999 999888889999999999999753
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.1e-48 Score=403.54 Aligned_cols=279 Identities=37% Similarity=0.688 Sum_probs=257.6
Q ss_pred HHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhhcCc-chHHHHHHHHHHHHHHH
Q 006141 191 LGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHNTKE-WSWQTILMGFCFLVFLL 269 (659)
Q Consensus 191 lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ig~~~l~~l~ 269 (659)
||++|+|++.+|+|+||+.||++|+|++++.+|++.++|++..+...+..+.+.+++...++ +||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999997434445566666677766666 59999999999999999
Q ss_pred HHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCCCCCccccccchhhHHHHHHHHHHHHHHH
Q 006141 270 LTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLNPPSWNMLKFHGSHLGLVMKTGLITGIIS 349 (659)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~~~~~~~~~~~~~~~~~~~~~iaiv~ 349 (659)
..+++.++++++++.+.|.+++++++++++++.+..+.++++.+|++|.++|+|.+|+.+++++.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 99988877887777888899999999999999998888899999999999999999955556667888899999999999
Q ss_pred HHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhH
Q 006141 350 LTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMP 429 (659)
Q Consensus 350 ~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~ 429 (659)
++|++.+++++++++++++|.||||+|+|++|+++|+|||+|++++++||++|.++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCchhHHH
Q 006141 430 LFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKFDFLV 469 (659)
Q Consensus 430 l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v 469 (659)
+++|+|+++||+++++++++|+|+++++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999864
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=1.1e-26 Score=253.56 Aligned_cols=330 Identities=16% Similarity=0.147 Sum_probs=246.5
Q ss_pred HHHHHHhhHHHHHHHhCCCc-------chhhhhhhhhhhhhh----hccCCCccccchhh-HHHHHHHHHHhhccCCCCC
Q 006141 102 IASLAIPQGISYAKLANLPP-------IVGLYSSFVPPLVYT----VLGSSRDLAVGPVS-IASLIMGSMLRQEVSPTQN 169 (659)
Q Consensus 102 v~~~~iPq~~aya~laglpp-------~~GLyss~v~~liy~----~fGss~~~~~Gp~a-~~sl~~~~~v~~~~~~~~~ 169 (659)
.+.+.+|.-++-+ .|+|+ ...+.++.++++++. .+|++.++..||.. .++.+... ..
T Consensus 10 ~~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~-~~-------- 78 (406)
T TIGR03173 10 AGAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAI-GA-------- 78 (406)
T ss_pred HHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHH-hh--------
Confidence 4567788877754 38988 578889999999997 68999999999955 33333322 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhh
Q 006141 170 PVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHN 249 (659)
Q Consensus 170 ~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~ 249 (659)
+..++.+.++.+++|++++++|. .++++.+++|+.|++.++..+|+.++..+++...|... .
T Consensus 79 -~~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~------------- 140 (406)
T TIGR03173 79 -GGGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---A------------- 140 (406)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---c-------------
Confidence 24588899999999999999995 68999999999888889999999999999988766431 0
Q ss_pred cCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeecccc-CCCC---CCc
Q 006141 250 TKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQE-GLNP---PSW 325 (659)
Q Consensus 250 ~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~-gl~~---p~~ 325 (659)
.+..++.++.+++.+++++++.+++.|++. +.++.++++++++++++.++..+ .+.+++.|- .+|. +..
T Consensus 141 ~~~~~~~~~~l~l~~l~~~il~~~~~~~~~-----~~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~ 213 (406)
T TIGR03173 141 PDFGSPQNLGLALLTLVIILLLNRFGKGFL-----RSIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGA 213 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhHH-----HHhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCC
Confidence 011345566788888887777665444432 23488999999999999987532 222232221 2222 223
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccC---ChhHHHHHhHhHhhhhccCcccccccchhhHHH
Q 006141 326 NMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVD---GNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVN 402 (659)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d---~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~ 402 (659)
| +|++.. +...+.+++++++|+++..++.++..|++.| .|||+.++|++|+++++||++|.++...+++++
T Consensus 214 P--~f~~~~----~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~ 287 (406)
T TIGR03173 214 P--TFDLVA----ILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLV 287 (406)
T ss_pred C--eeCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHH
Confidence 3 334332 3334568899999999999999988887665 479999999999999999999988744445678
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCch---hHHHHHHHh
Q 006141 403 HNAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKF---DFLVMLCAF 474 (659)
Q Consensus 403 ~~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~---d~~v~~~t~ 474 (659)
..+|++||++++++|++++++.++ ++++++++|.++++++++ +.++++....++.+++.+.. +..+...++
T Consensus 288 ~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~rn~~i~g~~~ 363 (406)
T TIGR03173 288 QLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRRRNLLIVAVSL 363 (406)
T ss_pred HHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCcceehhhHHHH
Confidence 889999999999999998888776 899999999999999877 68999888888877766543 445444433
No 7
>PRK10720 uracil transporter; Provisional
Probab=99.95 E-value=4.9e-26 Score=248.43 Aligned_cols=357 Identities=13% Similarity=0.137 Sum_probs=260.0
Q ss_pred HHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhcc-CCCccccch-hhHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 006141 102 IASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLG-SSRDLAVGP-VSIASLIMGSMLRQEVSPTQNPVLFLQLAFT 179 (659)
Q Consensus 102 v~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fG-ss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~ 179 (659)
.+.+.+|.-+ |+++...+..+.++++++.+++ ++.++..|| ++.++.+.... . ..++.+.+
T Consensus 29 ~~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~---------~~~~~~lg 91 (428)
T PRK10720 29 GATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--P---------LGYEVALG 91 (428)
T ss_pred HHHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--H---------ccHHHHHH
Confidence 3566777733 8899999999999999998876 588999998 44444443321 1 13788899
Q ss_pred HHHHHHHHHHHHHHh--hh--hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhhcCcchH
Q 006141 180 ATFFGGLVQASLGLL--RL--GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHNTKEWSW 255 (659)
Q Consensus 180 ~t~l~Gi~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (659)
+.+++|+++++++++ |+ +++.+++|+.|++.+++.+|+.+....++ ..|... ... +..++
T Consensus 92 av~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~-~~g~~~--~~~-------------~~~~~ 155 (428)
T PRK10720 92 GFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAG-MAGLLP--AEG-------------QTPDS 155 (428)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHh-hccccC--CCC-------------cccch
Confidence 999999999999997 33 57899999999999999999999877775 333311 110 12356
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeecc-ccCCCCCCccccccchhh
Q 006141 256 QTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKL-QEGLNPPSWNMLKFHGSH 334 (659)
Q Consensus 256 ~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~i-p~gl~~p~~~~~~~~~~~ 334 (659)
.++.+++++++++++.....|++.+. .+.++++++++++++.++.. +.+.+++. +.++|.+..| +|++..
T Consensus 156 ~~~~lalv~l~iil~~~~~~kg~~~~-----~~iLigIvvG~ila~~lG~~--d~~~v~~a~~~~lP~~~~P--~fd~~~ 226 (428)
T PRK10720 156 KTIIISMVTLAVTVLGSVLFRGFLAI-----IPILIGVLVGYALSFAMGMV--DTTPIIEAHWFALPTFYTP--RFEWFA 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHH-----hHHHHHHHHHHHHHHHhcCC--CHHHhhcCccccCCCCCCC--cCcHHH
Confidence 67788888888887765555554432 25799999999999998753 23333322 3455554444 455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCch
Q 006141 335 LGLVMKTGLITGIISLTEGIAVGRTFAALKNY----QVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTA 410 (659)
Q Consensus 335 ~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~----~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~ 410 (659)
+..+++ .+++.++|+++...+.++..++ +.|.|||+.++|++|+++|+||++|.+++..+..+-..+|..+|
T Consensus 227 il~l~~----~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr 302 (428)
T PRK10720 227 ILTILP----AALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYST 302 (428)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchh
Confidence 444444 4556667888777666655443 35789999999999999999999999997777777888999999
Q ss_pred hhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhc--CCch---hHHHHH-----------H
Q 006141 411 VSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWK--IDKF---DFLVML-----------C 472 (659)
Q Consensus 411 la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~--~~~~---d~~v~~-----------~ 472 (659)
.+..+++++++++.++ ++++++.+|.+|++|+.+ +.++++....++.+|+ .+.. +..+.. .
T Consensus 303 ~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~ 381 (428)
T PRK10720 303 WVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV 381 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 9988888888777764 999999999999999999 9999999999999965 3321 223221 2
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCc
Q 006141 473 AFLGVVFISVQEGLAIAVGISIFKILLQITRPK 505 (659)
Q Consensus 473 t~~~~~~~~~~~Gl~~gv~~s~~~~~~~~~~p~ 505 (659)
++...+..|+..|.++|++++++...+|.-|++
T Consensus 382 ~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~ 414 (428)
T PRK10720 382 NIGAAELKGMALATIVGIGLSLIFKLISKLRPE 414 (428)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcccccccCC
Confidence 233334468888999999999888776655553
No 8
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.4e-25 Score=237.34 Aligned_cols=373 Identities=19% Similarity=0.274 Sum_probs=288.3
Q ss_pred ChhhhhhhHHHHHHHHHH------HHhhHHHHHHHhCCCcc----hhhhhhhhhhhhhhhccCCCccccch-hhHHHHHH
Q 006141 88 SFKLFKSDIISGLTIASL------AIPQGISYAKLANLPPI----VGLYSSFVPPLVYTVLGSSRDLAVGP-VSIASLIM 156 (659)
Q Consensus 88 ~~~~l~~Di~aGltv~~~------~iPq~~aya~laglpp~----~GLyss~v~~liy~~fGss~~~~~Gp-~a~~sl~~ 156 (659)
+-.+++.|++||+|+.+. ..||.++ -+|+|.. ....+++++++..++++. .++..+| .+..+...
T Consensus 15 ~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~---~ag~~~~av~~AT~l~a~~gs~~mgl~An-~P~alapgmglnAfFa 90 (436)
T COG2252 15 HGTTVRTEVIAGLTTFLTMAYIVFVNPQILG---AAGMPVGAVFVATCLAAAIGSIAMGLYAN-LPIALAPGMGLNAFFA 90 (436)
T ss_pred cCchHHHHHHHHHHHHHHHHHhheecHHHHH---hcCCCchhHHHHHHHHHHHHHHHHHHHHc-CchhhcchhhHHHHHH
Confidence 347899999999999972 2344444 3677754 345568899999999965 7788887 67778888
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCC
Q 006141 157 GSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRL-GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTN 235 (659)
Q Consensus 157 ~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rl-g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~ 235 (659)
.+++... ...||.++++.|++|++++++++.++ .++++.+|+++..|..+|+|++|..-.++ -.|+-. ..
T Consensus 91 ftvv~~~-------gi~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL~-~~Givv-~~ 161 (436)
T COG2252 91 FTVVLGM-------GLSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGLK-NAGIVV-AN 161 (436)
T ss_pred HHHHHhc-------CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh-hCCeEE-ec
Confidence 8887764 24599999999999999999999998 56699999999999999999999988888 456521 11
Q ss_pred CCChHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeec
Q 006141 236 QMGLIPVMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGK 315 (659)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ 315 (659)
+.. ...+.+.+.+..++++..+++..... .+|.+. +.+++++..+++++..+.........+.
T Consensus 162 ~~t--------lv~LG~~~~p~vll~i~G~~l~~~L~--~~~i~G-------aili~i~~~t~~g~~~g~~~~~~~~~~~ 224 (436)
T COG2252 162 PAT--------LVALGDFTSPGVLLAILGLLLIIVLV--SRKIKG-------AILIGILVTTILGIILGIDVHFGGLVGA 224 (436)
T ss_pred Ccc--------eEEeecCCCchHHHHHHHHHHHHHHH--HhhccH-------hhhHHHHHHHHHHHHhcccccccccccC
Confidence 111 22334444455666666666555544 255554 6788999999999998853222222233
Q ss_pred cccCCCCCCccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------cccCChhHHHHHhHhHhhhhccC
Q 006141 316 LQEGLNPPSWNMLKFHG-SHLGLVMKTGLITGIISLTEGIAVGRTFAALKN------YQVDGNKEMIAIGVMNIVGSSTS 388 (659)
Q Consensus 316 ip~gl~~p~~~~~~~~~-~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~------~~~d~n~El~a~G~~Niv~s~fg 388 (659)
.|+-. |.+.+.++.. ......++..+...++.++|++++....+++.| +..|.+|.+.+++++.++|+++|
T Consensus 225 ~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~~~~al~~D~v~t~~ga~~G 302 (436)
T COG2252 225 PPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPRIGKALLADSVATVVGALFG 302 (436)
T ss_pred CCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccccchHHHHhHHHHHHHHhcC
Confidence 33222 2222344443 334555667788889999999998888877633 23578999999999999999999
Q ss_pred cccccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCchhHH
Q 006141 389 CYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKFDFL 468 (659)
Q Consensus 389 ~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~ 468 (659)
+.|++. +.+|+.....|+||.++.++.|+++++. +|++|++..+|..+.++.+++++..|+. .+.++|+.|+.
T Consensus 303 tS~~t~-yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~lM~~-----~v~~id~~d~~ 375 (436)
T COG2252 303 TSTVTA-YIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGALMLS-----SVKQIDWSDFT 375 (436)
T ss_pred Ccchhh-hhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHHHHh-----hhccCCchhhh
Confidence 999776 9999999999999999999999999999 6999999999999999999999999886 67889999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 006141 469 VMLCAFLGVVFISVQEGLAIAVGISIFKILL 499 (659)
Q Consensus 469 v~~~t~~~~~~~~~~~Gl~~gv~~s~~~~~~ 499 (659)
..+.+|++.++..+.+.+.-|+.++++.+..
T Consensus 376 ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i 406 (436)
T COG2252 376 EAVPAFLTIVMMPLTYSIADGIAFGFISYVI 406 (436)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999888744
No 9
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.95 E-value=1.2e-25 Score=245.32 Aligned_cols=327 Identities=16% Similarity=0.149 Sum_probs=252.1
Q ss_pred HHHHHHHHhhHHHHHHHhCCCcc-------hhhhhhhhhhhhhhhccCCC---ccccchh-hHHHHHHHHHHhhccCCCC
Q 006141 100 LTIASLAIPQGISYAKLANLPPI-------VGLYSSFVPPLVYTVLGSSR---DLAVGPV-SIASLIMGSMLRQEVSPTQ 168 (659)
Q Consensus 100 ltv~~~~iPq~~aya~laglpp~-------~GLyss~v~~liy~~fGss~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~ 168 (659)
+..+.+.+|..++-+. +++. ..+.++.++++++++.+..+ +...|+. +.++..+....
T Consensus 18 ~~~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~-------- 86 (415)
T TIGR00801 18 MFGGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGS-------- 86 (415)
T ss_pred HHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHh--------
Confidence 3445777888777655 4443 67888999999999887766 7788885 65554433221
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHh--hh--hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHH
Q 006141 169 NPVLFLQLAFTATFFGGLVQASLGLL--RL--GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMS 244 (659)
Q Consensus 169 ~~~~~~~~a~~~t~l~Gi~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~ 244 (659)
...++.+....+++|+++++++.+ |+ +++.+++|+.|.++++.++|+.++..+++++.|....++..
T Consensus 87 --~~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~------- 157 (415)
T TIGR00801 87 --GLGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSA------- 157 (415)
T ss_pred --ccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccccc-------
Confidence 123678899999999999999985 43 57799999999999999999999999999988764311111
Q ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccc-cCCCCC
Q 006141 245 SVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQ-EGLNPP 323 (659)
Q Consensus 245 ~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip-~gl~~p 323 (659)
+..++.++.+++.+++++++.+++.|++- ..++.++++++++++++.++..+. +-+.+.| .++|.+
T Consensus 158 ------~~~~~~~~~vg~~~l~~~vl~~~~~~g~~-----~~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~ 224 (415)
T TIGR00801 158 ------TYGSLENLGVAFVVLALIILLNRFGKGFL-----KSISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTP 224 (415)
T ss_pred ------ccCchhhHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCc
Confidence 11245567899998888877765544432 233889999999999999875322 1122223 134444
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccC----ChhHHHHHhHhHhhhhccCcccccccchhh
Q 006141 324 SWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVD----GNKEMIAIGVMNIVGSSTSCYITTGAFSRS 399 (659)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d----~n~El~a~G~~Niv~s~fg~~p~~~s~srS 399 (659)
..|.++|++. .+...+.+++++++|+++..++++++.|++.| .|||+.++|++|+++|+||++|.+++..++
T Consensus 225 ~~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~ 300 (415)
T TIGR00801 225 FTFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNI 300 (415)
T ss_pred cCCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhh
Confidence 3332345543 44445678999999999999999999888664 479999999999999999999999999999
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCc
Q 006141 400 AVNHNAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDK 464 (659)
Q Consensus 400 ~~~~~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~ 464 (659)
+++..+|++||.+.+++|++++++.++ ++++++++|.++++++.+ +.++++....++.+++.+.
T Consensus 301 g~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~ 366 (415)
T TIGR00801 301 GVIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKL 366 (415)
T ss_pred eeeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999998 999999999999999999 8899998888888887654
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=1.5e-25 Score=186.08 Aligned_cols=83 Identities=51% Similarity=1.048 Sum_probs=80.6
Q ss_pred ccccCcCCCCCh-hhhhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHH
Q 006141 78 FPILEWGPNYSF-KLFKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIM 156 (659)
Q Consensus 78 ~P~~~w~~~y~~-~~l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~ 156 (659)
+|+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 699999999997 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 006141 157 GSML 160 (659)
Q Consensus 157 ~~~v 160 (659)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8763
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.91 E-value=3.5e-22 Score=218.06 Aligned_cols=328 Identities=17% Similarity=0.166 Sum_probs=229.1
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhh-hccCCCccccchhh-HHHHHHHHHHhhccCCCCC
Q 006141 92 FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYT-VLGSSRDLAVGPVS-IASLIMGSMLRQEVSPTQN 169 (659)
Q Consensus 92 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~-~fGss~~~~~Gp~a-~~sl~~~~~v~~~~~~~~~ 169 (659)
+...++.|+.-.+...--.++...+-|+++...+.++.++++++. .+|+..+...|+.. ....++... .. ...+
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~--~~--~~~~ 104 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAAT--GY--NGQG 104 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHH--hh--cccC
Confidence 467888888776644433333344457999999999999999997 68999999999854 344433321 11 1112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHH
Q 006141 170 PVLFLQLAFTATFFGGLVQASLGLLRL----GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSS 245 (659)
Q Consensus 170 ~~~~~~~a~~~t~l~Gi~~~~lg~~rl----g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~ 245 (659)
++.+.+.++++++++|++++++|++++ +++.+++|+.|.+-.+..+|+.++...++...|- ++
T Consensus 105 ~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~~------ 171 (429)
T TIGR03616 105 TNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------GF------ 171 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------cc------
Confidence 234578888999999999999999875 6788899999999999999999987777643221 00
Q ss_pred HHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhh----cc-CCCceee-eccccC
Q 006141 246 VFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFK----AQ-HHGISVI-GKLQEG 319 (659)
Q Consensus 246 ~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~----~~-~~~v~~v-g~ip~g 319 (659)
-+|. ++.+++.+.+...+.|++-|. .+.++++++++++++.+. .. ..+.+.+ +.-+.+
T Consensus 172 -------~~~~----al~tl~~i~l~~l~~~~~l~~-----~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~ 235 (429)
T TIGR03616 172 -------DSWM----AVLTILCIGAVAVFTRGMLQR-----LLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFG 235 (429)
T ss_pred -------ccHH----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCcccc
Confidence 1221 222222222223333333221 278999999999988752 11 1233332 222334
Q ss_pred CCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCC--hhHHHHHhHhHhhhhccCcccccccch
Q 006141 320 LNPPSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDG--NKEMIAIGVMNIVGSSTSCYITTGAFS 397 (659)
Q Consensus 320 l~~p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~--n~El~a~G~~Niv~s~fg~~p~~~s~s 397 (659)
+|++..| .|+...+. ..+..+++.++|+++..++.++..+++.|+ ||++.++|++|+++|+||+.|.+.+..
T Consensus 236 lP~~~~p--~f~~~~il----~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~e 309 (429)
T TIGR03616 236 LPNFHTP--VFNANAML----LIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAE 309 (429)
T ss_pred CCcCCCc--eEcHHHHH----HHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceee
Confidence 5555544 34443333 334568888999999999988887777766 799999999999999999999888777
Q ss_pred hhHHHhhcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHH
Q 006141 398 RSAVNHNAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQI 459 (659)
Q Consensus 398 rS~~~~~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l 459 (659)
+..+...+|..+|......+++++++.++ ++.+++.||.||++|+.+ ..++++....++.+
T Consensus 310 n~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 310 NIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 77777778888888888777776665543 455999999999999998 89999988888743
No 12
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.87 E-value=5.9e-21 Score=203.86 Aligned_cols=326 Identities=13% Similarity=0.120 Sum_probs=243.6
Q ss_pred HHHHHHHhhHHHHHHHhCCCcc-------hhhhhhhhhhhhhhh----ccCCCccccch-hhHHHHHHHHHHhhccCCCC
Q 006141 101 TIASLAIPQGISYAKLANLPPI-------VGLYSSFVPPLVYTV----LGSSRDLAVGP-VSIASLIMGSMLRQEVSPTQ 168 (659)
Q Consensus 101 tv~~~~iPq~~aya~laglpp~-------~GLyss~v~~liy~~----fGss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~ 168 (659)
..+.+.+|.-++-+. |++++ +.|++|.++++++.+ +|+..+...|. ++.++.+....-..
T Consensus 30 fg~~V~VPlivg~a~--~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~------ 101 (451)
T COG2233 30 FGATVLVPLLVGLAL--GLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTT------ 101 (451)
T ss_pred HhcchHhhHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhcc------
Confidence 345677787666554 55543 569999999999987 66678888886 66666665543221
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHH
Q 006141 169 NPVLFLQLAFTATFFGGLVQASLGLLRLG-FIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVF 247 (659)
Q Consensus 169 ~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg-~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~ 247 (659)
....+.+....+.+|++.++++.+ +. |+.|++|+.|.+-++.-+|+.++...++.+.|........+
T Consensus 102 --g~~~~~~~G~ii~ag~~~~li~~~-~~~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~--------- 169 (451)
T COG2233 102 --GDGIAALLGGIIAAGLVYFLISPI-VKIRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPD--------- 169 (451)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcc---------
Confidence 022566788999999999999988 45 99999999999999999999999999999999853111111
Q ss_pred hhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccc-cCCCCCCcc
Q 006141 248 HNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQ-EGLNPPSWN 326 (659)
Q Consensus 248 ~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip-~gl~~p~~~ 326 (659)
..+..++.+++.++++.++..++.|.+-+ ..+.|+++++|++++++++..+ .+.+.+.| -++|.|..+
T Consensus 170 ----~~~~~~l~la~~tl~~il~~~~f~~g~~~-----~i~ILiGlv~G~~la~~~G~vd--f~~v~~a~w~~~P~~~~f 238 (451)
T COG2233 170 ----FGSLENLGLALVTLLIILLINRFGKGFLR-----RIPILIGLVVGYLLALFMGMVD--FSGVAEAPWFALPTPFYF 238 (451)
T ss_pred ----cCchhHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHhCCcC--ccccccCceeeCCcccCC
Confidence 23556778999999888887766665543 2368999999999999998422 22222221 134444433
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc----cCChhHHHHHhHhHhhhhccCcccccccchhhHHH
Q 006141 327 MLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQ----VDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVN 402 (659)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~----~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~ 402 (659)
...|++..+..++ .++++.+.|+++.-++.++..|++ .+.+|.++++|++++++++||++|.|+.-.+..+-
T Consensus 239 g~~F~~~ail~m~----~v~iV~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv 314 (451)
T COG2233 239 GMAFDWGAILTML----PVAIVTIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVV 314 (451)
T ss_pred CeeecHHHHHHHH----HHHHHHHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeee
Confidence 3356655444444 466777777776666666555443 55678999999999999999999999988888888
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcC
Q 006141 403 HNAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKI 462 (659)
Q Consensus 403 ~~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~ 462 (659)
..+|.+||.+..++|+++++..++ ++.+++.||.+|++|+.+ +.++++....++.+-|.
T Consensus 315 ~lT~v~Sr~V~~~aavili~lgl~pk~~al~~sIP~pVlGGa~i-vmFG~Ia~sGir~l~~~ 375 (451)
T COG2233 315 ALTGVYSRYVIAGAAVILILLGLFPKFGALIQSIPSPVLGGAML-VLFGMIAASGIRILIRN 375 (451)
T ss_pred eeccCChhHHHHHHHHHHHHHHhhHHHHHHHHhCChhhhhHHHH-HHHHHHHHHHHHHHHhc
Confidence 889999999999999998888875 888999999999999877 78888877777666554
No 13
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.87 E-value=1.4e-19 Score=196.37 Aligned_cols=340 Identities=15% Similarity=0.117 Sum_probs=237.8
Q ss_pred HHHHHHHhhHHHHHHHhCCCcc-------hhhhhhhhhhhhhhhccCCCccccchhh-HHHHHHHHHHhhccCCCCChhh
Q 006141 101 TIASLAIPQGISYAKLANLPPI-------VGLYSSFVPPLVYTVLGSSRDLAVGPVS-IASLIMGSMLRQEVSPTQNPVL 172 (659)
Q Consensus 101 tv~~~~iPq~~aya~laglpp~-------~GLyss~v~~liy~~fGss~~~~~Gp~a-~~sl~~~~~v~~~~~~~~~~~~ 172 (659)
..+.+.+|.-++-+. |+++. ..+..+.+.+++.+++|++.++..||.. ....++.-..... ..+.....
T Consensus 22 ~~~~i~vPliva~a~--gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~-~~g~~~~~ 98 (433)
T PRK11412 22 FCNTVVVPPTLLSAF--QLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEA-SRGTPIND 98 (433)
T ss_pred HHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhccc-ccCccHHH
Confidence 455788888887664 88885 6788899999999999999999999944 4443333322110 00000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhhcC
Q 006141 173 FLQLAFTATFFGGLVQASLGLLR-LGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHNTK 251 (659)
Q Consensus 173 ~~~~a~~~t~l~Gi~~~~lg~~r-lg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~ 251 (659)
.........+++|++++++|..+ ++++.+++|+.|.+-++.-+|+.++-..++++.|.+. ....++ +
T Consensus 99 ~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~-~~~~~~-----------~ 166 (433)
T PRK11412 99 IATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPF-GIADPN-----------G 166 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCc-cCcccc-----------c
Confidence 12222346788999999999998 6999999999999999999999999999999988621 101110 1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHH-HhhccCCCceeeeccccCCCCCCcccc-c
Q 006141 252 EWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVF-AFKAQHHGISVIGKLQEGLNPPSWNML-K 329 (659)
Q Consensus 252 ~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~-~~~~~~~~v~~vg~ip~gl~~p~~~~~-~ 329 (659)
++++..+.+++.++.+++....+.|++-|. .+.++++++|++++. .++. +.+.+++.+ |.+..+..+ +
T Consensus 167 ~~~~~~~~~a~~~l~~il~~~~~~~g~~~~-----~svLiGiv~G~v~a~~~~g~---d~~~v~~a~--w~~~pfG~P~~ 236 (433)
T PRK11412 167 KIQLPPFGLSVAVMCLVLAMIIFLPQRIAR-----YSLLVGTIVGWILWAFCFPS---SHSLSGELH--WQWFPLGSGGA 236 (433)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHhCC---CcchhccCC--ceeecCCCCCc
Confidence 223345677777777777766655554332 378999999999854 4444 222223322 111112222 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhc
Q 006141 330 FHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNY----QVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNA 405 (659)
Q Consensus 330 ~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~----~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~ 405 (659)
|++..+. ..++++++...|+++.-++.++..++ +.+.+|.+.++|++|+++++||++|.+....+..+-..+
T Consensus 237 F~~~~il----~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~T 312 (433)
T PRK11412 237 LEPGIIL----TAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQT 312 (433)
T ss_pred cCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhc
Confidence 5544333 34456677777777666666655444 346689999999999999999999999988888888899
Q ss_pred CCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCc--hhHHHH
Q 006141 406 GAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDK--FDFLVM 470 (659)
Q Consensus 406 G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~--~d~~v~ 470 (659)
|+++|.+..++|++++++.++ ++.++..||.+|++|+.++ .++++-...++.+.|.+. .+..+.
T Consensus 313 gV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~rn~~iv 380 (433)
T PRK11412 313 GDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFTARNIYRL 380 (433)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCcccchhh
Confidence 999999999999999988876 8889999999999998874 777776666666655543 344443
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.85 E-value=7.8e-19 Score=190.70 Aligned_cols=340 Identities=18% Similarity=0.154 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHH------HHhhHHHHHHHhCCC------cchhhhhhhhhhhhhhh-ccCCCccccchhh-HHHHHHHHH
Q 006141 94 SDIISGLTIASL------AIPQGISYAKLANLP------PIVGLYSSFVPPLVYTV-LGSSRDLAVGPVS-IASLIMGSM 159 (659)
Q Consensus 94 ~Di~aGltv~~~------~iPq~~aya~laglp------p~~GLyss~v~~liy~~-fGss~~~~~Gp~a-~~sl~~~~~ 159 (659)
+++++|++-.+. .+|.-++.+ .|++ ....+.++.+.++++++ +|...++..||.. ... ....
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~--~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~--~~~~ 77 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAA--FGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF--AFMI 77 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH--HHHG
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh--hhhc
Confidence 577888877754 445555544 1321 24678889999999999 9999999999843 332 1111
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCC
Q 006141 160 LRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRL-GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMG 238 (659)
Q Consensus 160 v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rl-g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~ 238 (659)
+... ..+....++.+.++.+++|+++++++++++ +++.+++|+.|..+++.++|+.+....++.+.|.... .+.
T Consensus 78 ~~g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~--~~~ 152 (389)
T PF00860_consen 78 VIGM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN--PDG 152 (389)
T ss_dssp GG--------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-----BTT
T ss_pred cccc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc--ccc
Confidence 2110 122345688899999999999999999998 5999999999999999999999999999988887531 111
Q ss_pred hHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeecccc
Q 006141 239 LIPVMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQE 318 (659)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~ 318 (659)
....++.....++.++++.+....+.+++.+. .+.++++++++++++..+..+.+-. +.+-|-
T Consensus 153 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ailigi~~g~i~~~~~g~~~~~~~-~~~~~~ 215 (389)
T PF00860_consen 153 -----------LLVGDGKNLGLAVLTLLFILLLSLFLKGFLRK-----GAILIGIIAGWIVAAILGVVDFSPS-VSSAPW 215 (389)
T ss_dssp ------------B---HHHHHHHHHHHHHHHHHHHSSSTTTTT-----HHHHHHHHHHHHHHHHHHHTTSSH--HHHS-S
T ss_pred -----------cccccccccccccccchhhhhhhhhhhhhccc-----ccchhhhhhhhhhhhcccccccCcc-cccccc
Confidence 01123444556666666665555444444332 2789999999999999884222111 111111
Q ss_pred -CCCCC-CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhHhHhhhhccCcccc
Q 006141 319 -GLNPP-SWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNY----QVDGNKEMIAIGVMNIVGSSTSCYIT 392 (659)
Q Consensus 319 -gl~~p-~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~----~~d~n~El~a~G~~Niv~s~fg~~p~ 392 (659)
++|.| .+..+.|+ ...+...+...++.++|+++...+.++..|. +.+.+|.+.++|++|+++++||+.|.
T Consensus 216 ~~~p~~~~~g~p~f~----~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~ 291 (389)
T PF00860_consen 216 FSLPSPFPFGWPSFD----PGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPT 291 (389)
T ss_dssp S------------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---E
T ss_pred ccccccccccccccc----HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCC
Confidence 12211 11111233 3344455567788888888777776665443 45579999999999999999999998
Q ss_pred cccchhhHHHhhcCCCchhhHHHHHHHHHHHHH--HhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCc
Q 006141 393 TGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLL--FLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDK 464 (659)
Q Consensus 393 ~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll--~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~ 464 (659)
+.+..+.++-..+|+++|.+++.++++.+++.+ +++|++..+|.++++|..++. ++++-...++.+...+.
T Consensus 292 t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~-~g~i~~~gi~~i~~~~~ 364 (389)
T PF00860_consen 292 TTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVL-FGMIMMSGIRNIDWVDL 364 (389)
T ss_dssp EE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHH-HHHHHHHHHHHHHHTTS
T ss_pred ccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHhHhheeccc
Confidence 887777777777999999999999998887776 489999999999988776533 23332345555444333
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.76 E-value=7.6e-19 Score=158.06 Aligned_cols=117 Identities=36% Similarity=0.537 Sum_probs=104.2
Q ss_pred cccccccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHH
Q 006141 524 YNEAIRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEK 603 (659)
Q Consensus 524 ~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~ 603 (659)
|++.++.+++.|+|++|+|+|+|++++++++.+...+.+++.+ .....+.+||||++|++||++|+++|.++.+++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~ 78 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK--KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRR 78 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H--TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc--ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHH
Confidence 5677788999999999999999999999999988764421110 12347999999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHH
Q 006141 604 KGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEA 643 (659)
Q Consensus 604 ~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~A 643 (659)
+|++++++++++++++.|+++| +.+.++++++|+|++||
T Consensus 79 ~g~~~~l~~~~~~v~~~l~~~~-~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 79 RGVQLVLVGLNPDVRRILERSG-LIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp TTCEEEEESHHHHHHHHHHHTT-GHHHSCGGEEESSHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHcC-CChhcCCCCccCCHHHC
Confidence 9999999999999999999999 99999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.68 E-value=1.3e-16 Score=140.85 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=94.7
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
++.+++.+++++|+|+|+|++.|++++.+.+.+. +.+.+++||++|+||||||+++|.+++++++++|++
T Consensus 4 ~~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~----------~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~ 73 (106)
T TIGR02886 4 EVKGDVLIVRLSGELDHHTAERVRRKIDDAIERR----------PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGE 73 (106)
T ss_pred EEECCEEEEEEecccchhhHHHHHHHHHHHHHhC----------CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCE
Confidence 3467899999999999999999999998876532 378999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHH
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAV 644 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av 644 (659)
++++++++++++.|+++| +.+.+ ++|++.++|+
T Consensus 74 l~l~~~~~~v~~~l~~~g-l~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 74 VIVCNVSPAVKRLFELSG-LFKII---RIYESEEEAL 106 (106)
T ss_pred EEEEeCCHHHHHHHHHhC-CceEE---EEcCChHHhC
Confidence 999999999999999999 99888 5999999874
No 17
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.67 E-value=3e-16 Score=139.32 Aligned_cols=103 Identities=22% Similarity=0.254 Sum_probs=92.6
Q ss_pred ccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEE
Q 006141 529 RIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 529 ~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l 608 (659)
..+++.+++++|+|+|+|+++|++++.+.+.+. ..+.+|+||++|+|||+||+++|.+++++++++|+++
T Consensus 7 ~~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~----------~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l 76 (109)
T cd07041 7 VWDGVLVLPLIGDLDDERAEQLQERLLEAISRR----------RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGART 76 (109)
T ss_pred EeCCEEEEeeeeeECHHHHHHHHHHHHHHHHHc----------CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeE
Confidence 457899999999999999999999987665432 3689999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhcCCCccccCCCccccCHHHHH
Q 006141 609 VLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAV 644 (659)
Q Consensus 609 ~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av 644 (659)
+++++++++++.|+++| +.+ +..++|+|.+||+
T Consensus 77 ~l~g~~~~v~~~l~~~g-l~~--~~~~~~~t~~~Al 109 (109)
T cd07041 77 ILTGIRPEVAQTLVELG-IDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEEeCCHHHHHHHHHhC-CCh--hhceeeccHHHhC
Confidence 99999999999999999 877 3337999999984
No 18
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.61 E-value=8.1e-13 Score=152.30 Aligned_cols=351 Identities=15% Similarity=0.105 Sum_probs=242.6
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHhC------CCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCC
Q 006141 94 SDIISGLTIASLAIPQGISYAKLAN------LPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPT 167 (659)
Q Consensus 94 ~Di~aGltv~~~~iPq~~aya~lag------lpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~ 167 (659)
+-+-|-+-+.+..+.-++||+.+.+ +...=-|.|+.+++++|++||+.+..++|+++.++++...+..- ...
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~-c~~- 447 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSF-CES- 447 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHH-Hhh-
Confidence 4445556667778888899987642 44455689999999999999999999999998887766654332 111
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHH-
Q 006141 168 QNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSV- 246 (659)
Q Consensus 168 ~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~- 246 (659)
....|++..+.+.+.++++.++++.+...++++|+.+..-..|-.-++++.+...++.+...-........+..-.+.
T Consensus 448 -~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~ 526 (900)
T TIGR00834 448 -NGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVP 526 (900)
T ss_pred -cCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc
Confidence 123578888999999999999999999999999999999999999999999999998876542100000000000000
Q ss_pred ---------------------------HhhcCcchHHHHHHHHHHHHHHHHHhhhhc--cCCCc--cccccchhHHHHHH
Q 006141 247 ---------------------------FHNTKEWSWQTILMGFCFLVFLLLTRHVGT--KRPKL--FWVSAGAPLVSVIL 295 (659)
Q Consensus 247 ---------------------------~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~--~~~~~--~~i~~~~~li~vi~ 295 (659)
+......-..++++.+.++.+.+..+.+++ .+++. ..+...+..++|++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~ 606 (900)
T TIGR00834 527 PKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILI 606 (900)
T ss_pred cccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHH
Confidence 000112223455666666666666665432 11221 12566788899999
Q ss_pred HHHHHHHhhccCCCceeeeccccCCCCCCcc--------ccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006141 296 STLLVFAFKAQHHGISVIGKLQEGLNPPSWN--------MLK----FHGSHLGLVMKTGLITGIISLTEGIAVGRTFAAL 363 (659)
Q Consensus 296 ~t~i~~~~~~~~~~v~~vg~ip~gl~~p~~~--------~~~----~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~ 363 (659)
.+.+.+.++.. +.. --.+|+++.+ ..| .+. +.+.....++..++.++++-|+|+-.++....++
T Consensus 607 ~t~v~~~~~~v--~~~-kl~Vp~~f~p-t~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~ 682 (900)
T TIGR00834 607 MVLVDIFIGDT--YTQ-KLSVPSGLKV-TNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKK 682 (900)
T ss_pred HHHHHHHhccC--ccc-ccCCCCCcCC-CCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCc
Confidence 99999876521 110 0134555542 222 111 1233446777888999999999988777665543
Q ss_pred cCc---ccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhc----------C-------C-CchhhHHHHHHHHHH
Q 006141 364 KNY---QVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNA----------G-------A-KTAVSNVVMSVTVMV 422 (659)
Q Consensus 364 ~~~---~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~----------G-------~-~T~la~i~~a~~~ll 422 (659)
.+. ..-.+-+|+-.|+.|.++|++|--+.+++..+|....++ | + .+|+++++.++++.+
T Consensus 683 e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLigl 762 (900)
T TIGR00834 683 ERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGL 762 (900)
T ss_pred cccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHH
Confidence 221 223467899999999999999999999998888776652 2 2 378999999987766
Q ss_pred HHHHhhHHHhhhchhHHHHHHHHHHhhcCC
Q 006141 423 TLLFLMPLFQYTPNVVLGAIIVTAVVGLID 452 (659)
Q Consensus 423 ~ll~l~~l~~~iP~~vLa~ili~~~~~li~ 452 (659)
.+ +++|++.+||++||.|+.++.|+.-+.
T Consensus 763 sv-~~~PvL~~IP~aVL~GvFlYMGv~SL~ 791 (900)
T TIGR00834 763 SI-LMEPILKRIPLAVLFGIFLYMGVTSLS 791 (900)
T ss_pred HH-HHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 55 688999999999999999999998664
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.61 E-value=5.3e-13 Score=141.81 Aligned_cols=344 Identities=15% Similarity=0.195 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHHHh--hHHHH--HHHhCCCcch---hh----hhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhh
Q 006141 94 SDIISGLTIASLAIP--QGISY--AKLANLPPIV---GL----YSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQ 162 (659)
Q Consensus 94 ~Di~aGltv~~~~iP--q~~ay--a~laglpp~~---GL----yss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~ 162 (659)
.-+.||+...++..- -.+=+ +.-+|+++.. .+ .++.+.+++.++. .+.+++.++...-+.+++....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecCchHHHHHHHhcCC
Confidence 446677777765442 22222 3346777752 12 2344455555554 37899999765444444433322
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHH
Q 006141 163 EVSPTQNPVLFLQLAFTATFFGGLVQASLGLLR-LGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIP 241 (659)
Q Consensus 163 ~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~r-lg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 241 (659)
..+..+.++-+++|++.+++|+.+ ++|+.+++|+++..|.++|+.+.....-++.+..
T Consensus 101 ---------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~------------ 159 (395)
T TIGR00843 101 ---------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDG------------ 159 (395)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 125667888899999999999999 5999999999999999999988875443332211
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCC
Q 006141 242 VMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLN 321 (659)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~ 321 (659)
.+ ++++..++..++.|+ ..|+ ++.++++++++++++..+..+. + ++...++
T Consensus 160 ------------~p---ll~~~mll~~l~~~r---~~Pr------~avl~aLlvG~iva~~~G~~~~--~---~~~~~l~ 210 (395)
T TIGR00843 160 ------------LF---LICFSMLLCWLASKA---FAPR------YAMIAALICGIAFSFALGDMNP--T---DLDFKIA 210 (395)
T ss_pred ------------hH---HHHHHHHHHHHHHHH---hcch------HHHHHHHHHHHHHHHHhcCCCc--c---ccccccc
Confidence 11 233333333333332 2232 3789999999999988764221 1 1111233
Q ss_pred CCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCccc------cccc
Q 006141 322 PPSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYI------TTGA 395 (659)
Q Consensus 322 ~p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p------~~~s 395 (659)
.|.+-.++|+. ...+..++...++.+.....-+-...+..||+.+.|+-+.+.|++|++++.|||++ +++-
T Consensus 211 ~p~~~~P~fs~---~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaaitaAi 287 (395)
T TIGR00843 211 LPQFIAPDFSF---AHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAITAAI 287 (395)
T ss_pred cceeeCCCCCH---HHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHhHHH
Confidence 33322223322 23344444444444433322223344568999999999999999999999999999 3333
Q ss_pred chhhHHHhhcCCCchhhHHHHHHHHHHHHHH---hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCC-chhH--HH
Q 006141 396 FSRSAVNHNAGAKTAVSNVVMSVTVMVTLLF---LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKID-KFDF--LV 469 (659)
Q Consensus 396 ~srS~~~~~~G~~T~la~i~~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~-~~d~--~v 469 (659)
+.......+ ++|+-.+++..|++.++..++ +..++..+|.+..+++-=.+.++-+. ..+..-.+.+ .+|. +.
T Consensus 288 c~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~~~~~r~~a~~t 365 (395)
T TIGR00843 288 CMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALHEDQERDAALIA 365 (395)
T ss_pred hcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHHHH
Confidence 333334444 888999999999999888877 55689999999887765444444442 2233333222 2222 23
Q ss_pred HHHHhhhhhhhh---hhhhHHHHHHHH
Q 006141 470 MLCAFLGVVFIS---VQEGLAIAVGIS 493 (659)
Q Consensus 470 ~~~t~~~~~~~~---~~~Gl~~gv~~s 493 (659)
+++|.-+.-++| -.+|+++|+...
T Consensus 366 flvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 366 FLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 344444444443 467888886543
No 20
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.60 E-value=3.4e-15 Score=130.39 Aligned_cols=93 Identities=18% Similarity=0.298 Sum_probs=84.7
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
++.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||++|+|||+||+++|.+++++++++|++
T Consensus 4 ~~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~ 73 (100)
T cd06844 4 EKVDDYWVVRLEGELDHHSVEQFKEELLHNITN----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQ 73 (100)
T ss_pred EEECCEEEEEEEEEecHhhHHHHHHHHHHHHHh----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 356789999999999999999999998776542 2378999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhcCCCcccc
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~ 631 (659)
+.++|+++++++.|+++| +.+.+
T Consensus 74 l~l~~~~~~v~~~l~~~g-l~~~~ 96 (100)
T cd06844 74 FVLTGISPAVRITLTESG-LDKGX 96 (100)
T ss_pred EEEECCCHHHHHHHHHhC-chhhh
Confidence 999999999999999999 87654
No 21
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.4e-11 Score=138.64 Aligned_cols=339 Identities=13% Similarity=0.163 Sum_probs=231.4
Q ss_pred HHHhhHHHHHHHhC------CCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 006141 105 LAIPQGISYAKLAN------LPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVLFLQLAF 178 (659)
Q Consensus 105 ~~iPq~~aya~lag------lpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~ 178 (659)
..+--.++|+.+-| +...-.|.+..+++++|++||+-+.+++|+++.+.++-..+.. .. .+++..|++..+
T Consensus 372 a~l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~-f~--~~~~~dyl~~r~ 448 (876)
T KOG1172|consen 372 ACLLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFK-FC--KDNGLDYLAFRA 448 (876)
T ss_pred HhhhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHH-HH--hhCCCchhhHHH
Confidence 33344567765432 2334568899999999999999999999998888775554432 21 122356888889
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChH----HHH---HHHHhhc-
Q 006141 179 TATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLI----PVM---SSVFHNT- 250 (659)
Q Consensus 179 ~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~----~~~---~~~~~~~- 250 (659)
.+++.+.++.+++..+....+++|+.+..-..|-.-|+++.+...++.+.++..... .++. ... ..-..+.
T Consensus 449 wVglW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 527 (876)
T KOG1172|consen 449 WVGLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLP-IEFDSKPNPGADWSGPECESVS 527 (876)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccccccCCcccccccccccccC
Confidence 999999999999999999999999999999999999999999999998777632100 0000 000 0000000
Q ss_pred ---------CcchHHHHHHHHHHHHHHHHHhhhhc--cCCCc--cccccchhHHHHHHHHHHHHHhhc-cCCCceeeecc
Q 006141 251 ---------KEWSWQTILMGFCFLVFLLLTRHVGT--KRPKL--FWVSAGAPLVSVILSTLLVFAFKA-QHHGISVIGKL 316 (659)
Q Consensus 251 ---------~~~~~~~~~ig~~~l~~l~~~~~~~~--~~~~~--~~i~~~~~li~vi~~t~i~~~~~~-~~~~v~~vg~i 316 (659)
...-..++++.+.++.+-+..|.+++ .++++ .++...+..++|++.+++.++.+. ...++ .+
T Consensus 528 ~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl----~v 603 (876)
T KOG1172|consen 528 GTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL----PV 603 (876)
T ss_pred cccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc----cc
Confidence 11112233444444444444443321 11211 135666778889999999988762 22222 22
Q ss_pred ccCCCCCCc--------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---ccCChhHHHHHhHhHhhhh
Q 006141 317 QEGLNPPSW--------NMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNY---QVDGNKEMIAIGVMNIVGS 385 (659)
Q Consensus 317 p~gl~~p~~--------~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~---~~d~n~El~a~G~~Niv~s 385 (659)
|.++|++.- |.....+.....++..++.++++-|+|+-.++....++.+. ..-..-+|+-.|+.|+++|
T Consensus 604 p~~~~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~ics 683 (876)
T KOG1172|consen 604 PSVFPPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICS 683 (876)
T ss_pred CcCCCCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHH
Confidence 333332211 11134455677888889999999999988777665544322 2334568999999999999
Q ss_pred ccCcccccccchhhHHHhhc-----------------CC-CchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHH
Q 006141 386 STSCYITTGAFSRSAVNHNA-----------------GA-KTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAV 447 (659)
Q Consensus 386 ~fg~~p~~~s~srS~~~~~~-----------------G~-~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~ 447 (659)
+||--+..++..+|....++ |+ ..|++|++.++++.+. .++.|++..||++||.|+-.++|
T Consensus 684 llGLPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls-~~~~pvL~~IP~~VL~GvFlYMg 762 (876)
T KOG1172|consen 684 LLGLPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLS-VLLLPVLKLIPMPVLYGVFLYMG 762 (876)
T ss_pred hcCCCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHh
Confidence 99999999999998877663 23 3689999999988844 47999999999999999999999
Q ss_pred hhcCC
Q 006141 448 VGLID 452 (659)
Q Consensus 448 ~~li~ 452 (659)
+.-+.
T Consensus 763 v~SL~ 767 (876)
T KOG1172|consen 763 VSSLP 767 (876)
T ss_pred hccCC
Confidence 98663
No 22
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.44 E-value=2.9e-13 Score=119.78 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=91.4
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
+..+++.+++++|+++|.|++.|++.+.+...+ +..+.+++||+++++|||+|+++|.++.++++++|++
T Consensus 8 ~~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~ 77 (108)
T TIGR00377 8 EVQEGVVIVRLSGELDAHTAPLLREKVTPAAER----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQ 77 (108)
T ss_pred EEECCEEEEEEecccccccHHHHHHHHHHHHHh----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCE
Confidence 345789999999999999999999999887653 1378999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCccccCHHH
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGE 642 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~ 642 (659)
+.++++++++.+.|+.+| +.+.+ ++|+|.++
T Consensus 78 ~~l~~~~~~~~~~l~~~~-l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 78 LVLVSVSPRVARLLDITG-LLRII---PIYPTVEE 108 (108)
T ss_pred EEEEeCCHHHHHHHHHhC-hhhee---ccCCCCCC
Confidence 999999999999999999 99888 58888653
No 23
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.44 E-value=1.7e-10 Score=120.65 Aligned_cols=344 Identities=17% Similarity=0.217 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHH--hhH--HHHHHHhCCCcch---hhhh----hhhhhhhhhhccCCCccccch-hhHHHHHHHHHHhh
Q 006141 95 DIISGLTIASLAI--PQG--ISYAKLANLPPIV---GLYS----SFVPPLVYTVLGSSRDLAVGP-VSIASLIMGSMLRQ 162 (659)
Q Consensus 95 Di~aGltv~~~~i--Pq~--~aya~laglpp~~---GLys----s~v~~liy~~fGss~~~~~Gp-~a~~sl~~~~~v~~ 162 (659)
-+.+|+...++.. |-. +.-+.-+|+.+.. .+.+ ..+.++.+++. .+.++...= +...+++.. ...+
T Consensus 7 ~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWStPGaAlL~~-~~~~ 84 (378)
T PF03594_consen 7 AVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWSTPGAALLAT-SLPG 84 (378)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcchHHHHHHHH-hccC
Confidence 4556665555433 222 2224457888762 2222 22333333333 445555552 333344433 3332
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHH
Q 006141 163 EVSPTQNPVLFLQLAFTATFFGGLVQASLGLLR-LGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIP 241 (659)
Q Consensus 163 ~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~r-lg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~ 241 (659)
..+..+.++-+++|++.++.|+.+ ++++++++|.++..++++|+-+-....-++.+-.
T Consensus 85 ---------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~------------ 143 (378)
T PF03594_consen 85 ---------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQA------------ 143 (378)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 224567788889999999999999 5999999999999999999988876554442211
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCC
Q 006141 242 VMSSVFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLN 321 (659)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~ 321 (659)
++ .+....++..++.|++.+|+ +.+.+++.+..+++..+..+ . ..++..++
T Consensus 144 ------------~P---~l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~--~---~~~~~~~~ 194 (378)
T PF03594_consen 144 ------------DP---LLVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLH--P---SALQLSLA 194 (378)
T ss_pred ------------HH---HHHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCC--c---cccccccc
Confidence 11 33333344444455444444 45667777877777655321 1 11222344
Q ss_pred CCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHH
Q 006141 322 PPSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAV 401 (659)
Q Consensus 322 ~p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~ 401 (659)
.|.+-.++|+ +...+..++.+.++.+...-.-+-..-+.+||+.+.|+-+..-|+++++.+.|||++.+-+-...++
T Consensus 195 ~p~~~~P~Fs---~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAI 271 (378)
T PF03594_consen 195 HPVFTTPEFS---WSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAI 271 (378)
T ss_pred eeEEECCccc---HHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHH
Confidence 4554444454 3355666677777777655555555666799999999999999999999999999998887777777
Q ss_pred Hhh--cC---CCchhhHHHHHHHHHHHHHH---hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCc-hh--HHHH
Q 006141 402 NHN--AG---AKTAVSNVVMSVTVMVTLLF---LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDK-FD--FLVM 470 (659)
Q Consensus 402 ~~~--~G---~~T~la~i~~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~-~d--~~v~ 470 (659)
... ++ .|--.+++++|++.+++.++ +..++..+|.+.++.+-=.+.++-+. ..+..-++.++ .| .+.+
T Consensus 272 c~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~~r~aAlvtF 350 (378)
T PF03594_consen 272 CAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEKYREAALVTF 350 (378)
T ss_pred HcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcchhHHHHHHH
Confidence 665 33 34447888899988888876 55688999999877654444444332 33444454332 22 2233
Q ss_pred HHHhhhhhhhh---hhhhHHHHHHHHH
Q 006141 471 LCAFLGVVFIS---VQEGLAIAVGISI 494 (659)
Q Consensus 471 ~~t~~~~~~~~---~~~Gl~~gv~~s~ 494 (659)
++|.-+.-++| -.+|+++|++..+
T Consensus 351 lvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 351 LVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred HHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 44444444443 5678888887653
No 24
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.43 E-value=1.1e-12 Score=115.42 Aligned_cols=101 Identities=35% Similarity=0.567 Sum_probs=88.6
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
...+++.+++++|+++|+|++.+++++.+..+.. +..+.+|+||++++++|++|+++|.++.++++++|++
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~---------~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~ 75 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDED---------PPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE 75 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhccC---------CCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE
Confidence 4567899999999999999999999987765432 1247899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCcccc
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYL 638 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~ 638 (659)
+.++|+++++++.|+..| +.+.++.+..+.
T Consensus 76 ~~l~~~~~~~~~~l~~~g-~~~~~~~~~~~~ 105 (107)
T cd07042 76 LYLAGLNPQVRELLERAG-LLDEIGEENFFP 105 (107)
T ss_pred EEEecCCHHHHHHHHHcC-cHHHhCccccee
Confidence 999999999999999999 988876655443
No 25
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.29 E-value=1.6e-11 Score=106.38 Aligned_cols=90 Identities=26% Similarity=0.325 Sum_probs=82.4
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV 609 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~ 609 (659)
.+++.+++++|+++|.|++.+++.+.+..++ ..+.+++|+++++++|++|+++|.++.++++++|+++.
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~-----------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE-----------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc-----------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 4579999999999999999999988776542 25889999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCCcccc
Q 006141 610 LVNPLAEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 610 l~~~~~~v~~~L~~~g~~~~~~ 631 (659)
++++++++++.|++.| +.+.+
T Consensus 75 i~~~~~~~~~~l~~~g-l~~~~ 95 (99)
T cd07043 75 LVNVSPAVRRVLELTG-LDRLF 95 (99)
T ss_pred EEcCCHHHHHHHHHhC-cceee
Confidence 9999999999999999 87765
No 26
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.24 E-value=5.1e-11 Score=107.12 Aligned_cols=98 Identities=28% Similarity=0.325 Sum_probs=86.6
Q ss_pred EEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC
Q 006141 534 LILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP 613 (659)
Q Consensus 534 ~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~ 613 (659)
.++++.|.||..++..+++.+.+.+.+. ..+.+++|+++|+|+||+|++.|....+.++.+|.++.++++
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~----------~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i 84 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAAS----------GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGI 84 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcC----------CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 7999999999999999999999776653 356699999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhcCCCccccCCCccccCHHHHHH
Q 006141 614 LAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVA 645 (659)
Q Consensus 614 ~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~ 645 (659)
+|++.+.++.+| +.+.+ .++++.+++..
T Consensus 85 ~p~v~~~~~~~g-l~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 85 QPEVARTLELTG-LDKSF---IITPTELEAAL 112 (117)
T ss_pred CHHHHHHHHHhC-chhhc---ccccchHHHHH
Confidence 999999999999 88765 35665555543
No 27
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=99.09 E-value=2e-11 Score=134.05 Aligned_cols=348 Identities=13% Similarity=0.175 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhC------CCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChh
Q 006141 98 SGLTIASLAIPQGISYAKLAN------LPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPV 171 (659)
Q Consensus 98 aGltv~~~~iPq~~aya~lag------lpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 171 (659)
+-+-+.+..+.-+++|+.+.+ +...-.+.++.+++++|++||+.+..++|+++.+.+...... +... ...-
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~-~~~~--~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILY-KFCK--SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--cccc
Confidence 445556777778888877643 334456889999999999999999999999998876554332 2211 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCcccc-CCCCCh---HH------
Q 006141 172 LFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHF-TNQMGL---IP------ 241 (659)
Q Consensus 172 ~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~-~~~~~~---~~------ 241 (659)
+|++.-..+.+.++++.+++..+...++++|+.+..-..|.+-++++.+...++.+..+-.. +-..+. .+
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47777888999999999999999999999999999999999999999999999888765210 000000 00
Q ss_pred -------------------HHHHH----Hhhc------------CcchH----HHHHHHHHHHHHHHHHhhhhc--cCCC
Q 006141 242 -------------------VMSSV----FHNT------------KEWSW----QTILMGFCFLVFLLLTRHVGT--KRPK 280 (659)
Q Consensus 242 -------------------~~~~~----~~~~------------~~~~~----~~~~ig~~~l~~l~~~~~~~~--~~~~ 280 (659)
.+... ..+. .+..+ .++++.+.++.+....+.+++ .+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 00000 0000 01112 233344444444444443221 1121
Q ss_pred c--cccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCCCCC-------cccc-ccchhhHHHHHHHHHHHHHHHH
Q 006141 281 L--FWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLNPPS-------WNML-KFHGSHLGLVMKTGLITGIISL 350 (659)
Q Consensus 281 ~--~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~-------~~~~-~~~~~~~~~~~~~~~~iaiv~~ 350 (659)
. ..++..+..++|++.+.+.+.++.+.... ++|.++.+.. ++.+ +..+.....++..++.++++-+
T Consensus 275 ~vR~~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL~F 350 (510)
T PF00955_consen 275 WVREIISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTILFF 350 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 12566677888888888887765321111 2344432111 1111 1112223445556777888888
Q ss_pred HHHHHHHHHHhhhcCc---ccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcC-----------------C-Cc
Q 006141 351 TEGIAVGRTFAALKNY---QVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAG-----------------A-KT 409 (659)
Q Consensus 351 ~e~~~~~~~~a~~~~~---~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G-----------------~-~T 409 (659)
+|+-.++....++.+. ..-..-+|+-.|+.|.++|++|--+.+++..+|....++= + .+
T Consensus 351 ~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~Eq 430 (510)
T PF00955_consen 351 MDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVREQ 430 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEEEe
Confidence 8876655544333221 1223457899999999999999999999888887765532 1 47
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCCh
Q 006141 410 AVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDV 453 (659)
Q Consensus 410 ~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~ 453 (659)
|+++++.++++.+.+ ++.|++.+||++||.|+.++.|+.-++.
T Consensus 431 RvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~g 473 (510)
T PF00955_consen 431 RVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLSG 473 (510)
T ss_dssp --------------------------------------------
T ss_pred cccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeecC
Confidence 899999998776665 6789999999999999999999887643
No 28
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.07 E-value=1.1e-08 Score=108.96 Aligned_cols=316 Identities=14% Similarity=0.149 Sum_probs=186.4
Q ss_pred HHHHhhHHHHHHHhCCCc------chhhhhhhhhhhhhhhccCCCccccch-hhHHHHHHHHHHh-hccCCCCCh---hh
Q 006141 104 SLAIPQGISYAKLANLPP------IVGLYSSFVPPLVYTVLGSSRDLAVGP-VSIASLIMGSMLR-QEVSPTQNP---VL 172 (659)
Q Consensus 104 ~~~iPq~~aya~laglpp------~~GLyss~v~~liy~~fGss~~~~~Gp-~a~~sl~~~~~v~-~~~~~~~~~---~~ 172 (659)
.+.+|.-++=++=+|-.. ..-++++.+..++...||++.++..|| +|-+....+-.-. +.-.+.++. ++
T Consensus 29 ~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~ 108 (510)
T KOG1292|consen 29 TVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTE 108 (510)
T ss_pred hhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhH
Confidence 456666555444222111 145677888999999999999999998 4433332222221 221111111 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHH
Q 006141 173 ----FLQLAFTATFFGGLVQASLGLLRL-GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVF 247 (659)
Q Consensus 173 ----~~~~a~~~t~l~Gi~~~~lg~~rl-g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~ 247 (659)
..+..-++.++++++|.++|+.++ |++.+|+++-.+.=.++-+|+-+.-...+.+ .
T Consensus 109 ~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~------~------------- 169 (510)
T KOG1292|consen 109 RFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKL------G------------- 169 (510)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhh------h-------------
Confidence 235556788899999999999997 9999999999988888888876653322211 0
Q ss_pred hhcCcchHHHHHHHHHHHHHHHHHhhh---hcc-C--CCccccccchhHHHHHHHHHHHHHhhc---cCC-----Cc---
Q 006141 248 HNTKEWSWQTILMGFCFLVFLLLTRHV---GTK-R--PKLFWVSAGAPLVSVILSTLLVFAFKA---QHH-----GI--- 310 (659)
Q Consensus 248 ~~~~~~~~~~~~ig~~~l~~l~~~~~~---~~~-~--~~~~~i~~~~~li~vi~~t~i~~~~~~---~~~-----~v--- 310 (659)
+ +| -+|+..++++++...+ .++ + ++.......+.++++.+..++++++-. ..+ +.
T Consensus 170 ---~--~w---eI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~R 241 (510)
T KOG1292|consen 170 ---K--HW---EISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCR 241 (510)
T ss_pred ---h--he---eecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCccc
Confidence 0 11 2333333333333222 111 1 111112223456777777777776531 111 00
Q ss_pred -eeeecccc----CCCC-CCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCcccCChhHHHHHhHh
Q 006141 311 -SVIGKLQE----GLNP-PSWNMLKFHGSHLGLVMKTGLITGIISLTEGIAV----GRTFAALKNYQVDGNKEMIAIGVM 380 (659)
Q Consensus 311 -~~vg~ip~----gl~~-p~~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~----~~~~a~~~~~~~d~n~El~a~G~~ 380 (659)
+..+-+.. .+|. .++..+.|+......++. .++++++|+++. ++...+...-+...||....+|++
T Consensus 242 TD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~a----a~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig 317 (510)
T KOG1292|consen 242 TDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMA----ASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIG 317 (510)
T ss_pred ccHhhhhccCCceeecCCCccCCCcccHHHHHHHHH----HHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHH
Confidence 00111111 1121 233344555555555544 456666677654 443333333345669999999999
Q ss_pred HhhhhccCcccccccchhhHHHh-hcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcC
Q 006141 381 NIVGSSTSCYITTGAFSRSAVNH-NAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLI 451 (659)
Q Consensus 381 Niv~s~fg~~p~~~s~srS~~~~-~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li 451 (659)
.+++|+||.-.+++.+++...-. -+..-||.+--++|.++++.-.+ ++.+|+.||.+++||+.- .+++|+
T Consensus 318 ~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c-~~~~mv 390 (510)
T KOG1292|consen 318 SLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC-ILFGMV 390 (510)
T ss_pred HHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHH
Confidence 99999999776666555544333 37777888888888888777665 899999999999999764 455555
No 29
>PF13466 STAS_2: STAS domain
Probab=99.04 E-value=6.4e-10 Score=92.74 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=73.5
Q ss_pred EEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCCh
Q 006141 536 LSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLA 615 (659)
Q Consensus 536 ~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~ 615 (659)
++++|++++.+++.+++.+.++.+. .+.+++|+++|+++|++|++.|....+.++++|.++.+.|+++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~------------~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~~ 68 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS------------GRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPSP 68 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC------------CCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 4789999999999999999888632 2789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCC
Q 006141 616 EVLEKLQRSDDS 627 (659)
Q Consensus 616 ~v~~~L~~~g~~ 627 (659)
.+++.++..| +
T Consensus 69 ~~~~ll~~~g-l 79 (80)
T PF13466_consen 69 ALRRLLELLG-L 79 (80)
T ss_pred HHHHHHHHhC-c
Confidence 9999999998 6
No 30
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.87 E-value=4.4e-07 Score=93.09 Aligned_cols=276 Identities=16% Similarity=0.226 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhhcCc
Q 006141 174 LQLAFTATFFGGLVQASLGLLR-LGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHNTKE 252 (659)
Q Consensus 174 ~~~a~~~t~l~Gi~~~~lg~~r-lg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 252 (659)
...+.++-+.+|+..++.|++| ++++++-+|+++-.++.+|+=+-.....++.+-+
T Consensus 102 ~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~~~----------------------- 158 (402)
T COG3135 102 FAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKALPT----------------------- 158 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCC-----------------------
Confidence 4556778888999999999999 6999999999999999999988776665552210
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCCCCCccccccch
Q 006141 253 WSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLNPPSWNMLKFHG 332 (659)
Q Consensus 253 ~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~~~~~~~~~ 332 (659)
++ ++.+..+...++.|.+.+|+ +...++++|+.++...+.-.. +....-+..|.+-.++|+
T Consensus 159 -~p---~l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs- 219 (402)
T COG3135 159 -QP---LLVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFS- 219 (402)
T ss_pred -Ch---HHHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCccc-
Confidence 11 22233333344456555544 567778888888777653211 111111222333333444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhc-----CC
Q 006141 333 SHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNA-----GA 407 (659)
Q Consensus 333 ~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~-----G~ 407 (659)
+..++..++.+.++.+...-.-+-..-+.+||+.+++--+.+-|+..+.++.||++.++-.-..-++...- -.
T Consensus 220 --~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLaAItAAic~gpdaHpD~~ 297 (402)
T COG3135 220 --FAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLAAITAAICTGPDAHPDPA 297 (402)
T ss_pred --HHHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHHHHHHHHhcCCCCCCChH
Confidence 34556666667776665543333333456899999999999999999999999999876543333333221 13
Q ss_pred CchhhHHHHHHHHHHHHHH---hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhc-CCchhHH--HHHHHhhhhhhhh
Q 006141 408 KTAVSNVVMSVTVMVTLLF---LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWK-IDKFDFL--VMLCAFLGVVFIS 481 (659)
Q Consensus 408 ~T~la~i~~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~-~~~~d~~--v~~~t~~~~~~~~ 481 (659)
|--.+++++|+.-+++.+| +..++..+|.+.++.+-=.+..+-+. +.+..-.+ .+..|.. .+++|.-+.-++|
T Consensus 298 rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~lAGLALlg~~~-~~l~~A~~~~~~R~aAlvtF~VTaSG~tl~G 376 (402)
T COG3135 298 RRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAALAGLALLGTLG-NSLQAALKDEREREAALVTFLVTASGLTLFG 376 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHhcCcccchhhhhheeehhccceeec
Confidence 5568999999998888887 44577899998766442222222221 22333333 2222332 2334444444444
Q ss_pred ---hhhhHHHHHHHHH
Q 006141 482 ---VQEGLAIAVGISI 494 (659)
Q Consensus 482 ---~~~Gl~~gv~~s~ 494 (659)
-.+|++.|.+...
T Consensus 377 IgaafWGLvaG~~~~~ 392 (402)
T COG3135 377 IGAAFWGLVAGLLVLA 392 (402)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4567777765543
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.18 E-value=0.00027 Score=73.19 Aligned_cols=255 Identities=15% Similarity=0.171 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHHHHhhcCcchHH
Q 006141 178 FTATFFGGLVQASLGLLRL-GFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSSVFHNTKEWSWQ 256 (659)
Q Consensus 178 ~~~t~l~Gi~~~~lg~~rl-g~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (659)
.++.++.|++-++++.+|. .++++.-++-|-+|.+--.|+.=..+|++.++.... + .+ ..+.
T Consensus 145 Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~--~--------------~~-~~~i 207 (492)
T PF11840_consen 145 LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWAN--G--------------FD-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHh--c--------------cC-ccHH
Confidence 3577889999999999997 556888899999998777777777888887765422 0 00 1122
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccccCCCCCC----ccc---cc
Q 006141 257 TILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQEGLNPPS----WNM---LK 329 (659)
Q Consensus 257 ~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~gl~~p~----~~~---~~ 329 (659)
.+++-++++++.....+++|||- +.-+.-+++.++++.++.. ++... +.|+|+.+ +.. +.
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~KrWL--------aIPl~~~~a~~~a~~lGa~---f~f~t--~pglp~lnP~YWWge~tGw~ 274 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKRWL--------AIPLCSILAGVLAFALGAP---FEFTT--EPGLPNLNPMYWWGEETGWQ 274 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHHHHHcCCC---ceeec--CCCCCCCCCcccccCCcccc
Confidence 23333333333333444455543 2223445566667776642 22111 22332211 000 00
Q ss_pred cc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hcCcccCChhHHHHHhHhHhhhhccCcccccccchhhH
Q 006141 330 FH---GSHLGLVMKTGLITGIISLTEGIAVGRTFAA------LKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSA 400 (659)
Q Consensus 330 ~~---~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~------~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~ 400 (659)
+. .+.+...++.++.....=--|.++ -+.|.+ .++...|.|+.+....+=|++||.+||--.+.|...-.
T Consensus 275 LglP~~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTym 353 (492)
T PF11840_consen 275 LGLPTLEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYM 353 (492)
T ss_pred cCCCcHHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccchhhh
Confidence 00 122333444322111110112221 122222 12345788999999999999999999988776665544
Q ss_pred HHhhcCCC--chhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCch
Q 006141 401 VNHNAGAK--TAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKF 465 (659)
Q Consensus 401 ~~~~~G~~--T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~ 465 (659)
+-.. =+| -+-..+.+|++++++.++.-|.=-.+=.+++...+++-++-=+-...+ ++||-+|.
T Consensus 354 IPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLleAGm-qm~r~~k~ 418 (492)
T PF11840_consen 354 IPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLEAGM-QMTRKGKT 418 (492)
T ss_pred hhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHHHHH-HHHhcCCc
Confidence 4433 333 356678888888888877666322222344544455333321211222 56666654
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.54 E-value=0.00031 Score=59.33 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=65.6
Q ss_pred EEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006141 535 ILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL 614 (659)
Q Consensus 535 I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~ 614 (659)
.+.+.|+|+--+...+-+...+.. ++...+-+|+++|.-+||+|+..|.++.+.++++|..+-+++++
T Consensus 13 tL~LsGeL~r~tl~~lw~~r~~~~------------~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p 80 (99)
T COG3113 13 TLVLSGELDRDTLLPLWSQREAQL------------KQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVP 80 (99)
T ss_pred eEEEeccccHHHHHHHHHHHHHHc------------cccCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCc
Confidence 456788887444333322222221 23468999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCcccc
Q 006141 615 AEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 615 ~~v~~~L~~~g~~~~~~ 631 (659)
++++...+..| +.+.+
T Consensus 81 ~~L~tLa~Ly~-l~~~l 96 (99)
T COG3113 81 EQLRTLAELYN-LSDWL 96 (99)
T ss_pred HHHHHHHHHhC-cHhhh
Confidence 99999999988 75543
No 33
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=92.50 E-value=7.1 Score=44.88 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHh-------hcCC
Q 006141 335 LGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNH-------NAGA 407 (659)
Q Consensus 335 ~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~-------~~G~ 407 (659)
+..=+..++..+++.+-++++.+.. + ..++...|.+-.+..++.++||+.+-...-.-++... ..|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 3334455677888888888887753 2 4577778999999999999999987554333322211 1222
Q ss_pred C-ch---------hhHHHHHHHHHHHHHH-hhHHHhhhchhHHHHHHHHHHhhcC
Q 006141 408 K-TA---------VSNVVMSVTVMVTLLF-LMPLFQYTPNVVLGAIIVTAVVGLI 451 (659)
Q Consensus 408 ~-T~---------la~i~~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 451 (659)
. +. ..++.+|++.+++.++ ++-+..++|.+|+.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 21 5667777777666665 8899999999999887766665544
No 34
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=91.80 E-value=0.099 Score=45.73 Aligned_cols=106 Identities=8% Similarity=-0.052 Sum_probs=66.9
Q ss_pred cEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEec-CCCccChHHHHHHHHHHHHHHHcCCEEEE
Q 006141 532 GFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMS-AVSAIDTSGTSFFKDLRKAMEKKGVELVL 610 (659)
Q Consensus 532 ~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s-~V~~IDssgi~~L~~l~~~~~~~gi~l~l 610 (659)
++..++++|.++-.....+.+.+.+.+++ .+.-.+.+|++ .+..++..+.....++......+=.++.+
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~Av 70 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIAD----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAV 70 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTT----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhc----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEE
Confidence 46788999999877777777777766543 23567999999 88888876655444333222222357788
Q ss_pred EcCChhHHHHHHhcCCCccccCCCccc--cCHHHHHHHHhh
Q 006141 611 VNPLAEVLEKLQRSDDSGDFKRPDSLY--LTVGEAVASLSS 649 (659)
Q Consensus 611 ~~~~~~v~~~L~~~g~~~~~~~~~~if--~s~~~Av~~~~~ 649 (659)
++.++-.+...+..+ .... .+.++| .+.+||.+|.++
T Consensus 71 V~~~~~~~~~~~~~~-~~~~-~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 71 VGDSEWIRMIANFFA-AFPP-IEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp E-SSCCCHHHHHHHH-HH-S-SEEEEE--SSHHHHHHHHC-
T ss_pred EECcHHHHHHHHHHH-hcCC-CceEEECCCCHHHHHHHHcC
Confidence 887765554444333 2211 123799 999999999753
No 35
>PRK10720 uracil transporter; Provisional
Probab=91.53 E-value=0.96 Score=50.05 Aligned_cols=60 Identities=10% Similarity=-0.009 Sum_probs=47.6
Q ss_pred HHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHhhhch
Q 006141 373 EMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPN 436 (659)
Q Consensus 373 El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~ 436 (659)
++...=.++=++++++++-++...+-.+-|...+++|+.++-+...+-..++.. +..+|+
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~li~----lg~~pk 320 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAIL----LSCVGK 320 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHHHH----HHHHHH
Confidence 456667889999999999998889999999999999999999877755555433 344565
No 36
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=90.25 E-value=11 Score=41.34 Aligned_cols=111 Identities=11% Similarity=0.099 Sum_probs=66.0
Q ss_pred HHHHHHHHhhHHH----HHHHhCCCc-----chhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCCh
Q 006141 100 LTIASLAIPQGIS----YAKLANLPP-----IVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNP 170 (659)
Q Consensus 100 ltv~~~~iPq~~a----ya~laglpp-----~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 170 (659)
++.+++..-++++ .+...|-++ .-++.+-.++.++-++||+.+..+... .+.+... .+.
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~---~~~~~~~--tg~------- 292 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQ---NVGLVQL--TGV------- 292 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhh---hHHHHHH--hCC-------
Confidence 3444555555444 444555432 278999999999999999866433222 1111111 010
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhH
Q 006141 171 VLFLQLAFTATFFGGLVQASLGLL-RLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSL 227 (659)
Q Consensus 171 ~~~~~~a~~~t~l~Gi~~~~lg~~-rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~ 227 (659)
.. + .....+|++.+++|++ +++.+..++|.||+.|.+...--.+....++.+
T Consensus 293 ~s--r---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~~~~~i~~~g~~~l 345 (406)
T TIGR03173 293 KS--R---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLVMFGMVAASGIRIL 345 (406)
T ss_pred Cc--h---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1 2336678888888887 589999999999999955543333444444433
No 37
>PRK09928 choline transport protein BetT; Provisional
Probab=90.25 E-value=15 Score=42.63 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc
Q 006141 549 YLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN 612 (659)
Q Consensus 549 ~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~ 612 (659)
.-|+|+.+.++...++ +. -.|+|.++.-+++++.+|++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p~~~-------~~---------~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYPGTR-------YT---------RRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCCCHH-------HH---------HHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4788888877532110 01 368999999999999999999999998864
No 38
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.80 E-value=0.59 Score=40.59 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=59.0
Q ss_pred EEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC-----hhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhh
Q 006141 576 VILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL-----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSST 650 (659)
Q Consensus 576 vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~ 650 (659)
+++|+.+|-+-+...+.-=.+..+.++++|+++++..-+ .+..+.|+..| +. +.+++++.+...+.++.++.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~G-i~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLG-IP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTT-TT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcC-cC--CCcCEEEChHHHHHHHHHhc
Confidence 589999999999888888899999999999999977433 57889999999 75 44578999999999988875
No 39
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=89.33 E-value=7.9 Score=42.67 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhHH----HHHHHhCCCc------chhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccC
Q 006141 96 IISGLTIASLAIPQGI----SYAKLANLPP------IVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVS 165 (659)
Q Consensus 96 i~aGltv~~~~iPq~~----aya~laglpp------~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~ 165 (659)
+..=+.++++.+-+++ +.+..+|.++ .-++.+-.++.++-++||+.+.........+ +..
T Consensus 236 ~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~-------~~~--- 305 (415)
T TIGR00801 236 ILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV-------IAL--- 305 (415)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee-------eee---
Confidence 3333445555555554 4455667532 3789999999999999998655443321110 000
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhHhC
Q 006141 166 PTQNPVLFLQLAFTATFFGGLVQASLGLL-RLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSLLG 229 (659)
Q Consensus 166 ~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~-rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG 229 (659)
.. ...+ .+...+|++.+++|++ +++.+...+|.||+.|.....--.+..+.++.+..
T Consensus 306 -T~---~~sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~~ 363 (415)
T TIGR00801 306 -TR---VASR---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILIR 363 (415)
T ss_pred -cC---CCch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0011 2456678888888888 58999999999999998776666666666665543
No 40
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=89.08 E-value=1.7 Score=35.38 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHH-HHHHHHHHHH--HcCCEEEEEcCChhHHHHHH
Q 006141 546 NTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTS-FFKDLRKAME--KKGVELVLVNPLAEVLEKLQ 622 (659)
Q Consensus 546 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~-~L~~l~~~~~--~~gi~l~l~~~~~~v~~~L~ 622 (659)
+...+++++.+.++++ +.|+|||++++.+-+|=+. ++-.+.+++. +...++.+.|.++.+.+.++
T Consensus 2 ~G~~~~~~i~~~l~~~------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I~ 69 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMIK 69 (74)
T ss_pred ChHHHHHHHHHHHhcC------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHHH
Confidence 3567788877776543 4499999999888888766 3455555543 33578999999999998887
Q ss_pred h
Q 006141 623 R 623 (659)
Q Consensus 623 ~ 623 (659)
+
T Consensus 70 ~ 70 (74)
T PF14213_consen 70 R 70 (74)
T ss_pred H
Confidence 5
No 41
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=87.39 E-value=9 Score=43.82 Aligned_cols=107 Identities=18% Similarity=0.121 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHH--HhhcCC----Cc---
Q 006141 339 MKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAV--NHNAGA----KT--- 409 (659)
Q Consensus 339 ~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~--~~~~G~----~T--- 409 (659)
+..++..+++.+=++++.+.. . ..++...|.+-=++-++-++||+.|.-.+-..++. ...+.. .+
T Consensus 25 l~AGltva~valP~ama~a~~----a--Gv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAIA----A--GVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----c--CCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 344556677777777776652 2 27899999999999999999999986533222221 111111 22
Q ss_pred --hhhHHHHHHHHHHHHHH-hhHHHhhhchhHHHHHHHHHHhhcC
Q 006141 410 --AVSNVVMSVTVMVTLLF-LMPLFQYTPNVVLGAIIVTAVVGLI 451 (659)
Q Consensus 410 --~la~i~~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 451 (659)
-.+.+.+|++.++..++ ++-+..++|.+|+.|.+--.++-++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 23444555555554444 8889999999999987665555443
No 42
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=86.65 E-value=2.1 Score=47.03 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHh----hhcCcccCChhHHHHHhHhHhhhhcc--------CcccccccchhhHHHhh
Q 006141 345 TGIISLTEGIAVGRTFA----ALKNYQVDGNKEMIAIGVMNIVGSST--------SCYITTGAFSRSAVNHN 404 (659)
Q Consensus 345 iaiv~~~e~~~~~~~~a----~~~~~~~d~n~El~a~G~~Niv~s~f--------g~~p~~~s~srS~~~~~ 404 (659)
..+....+..++++... ++.+.+-...-|=++.=++-+++++- |-...|+-+||-.....
T Consensus 257 ~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~a 328 (451)
T COG2233 257 TIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGA 328 (451)
T ss_pred HHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHH
Confidence 34566666666666543 34566666666667777777777764 55677888888776655
No 43
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=81.97 E-value=2.8 Score=35.18 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=37.9
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHc-CCEEEEEcCCh
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK-GVELVLVNPLA 615 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~-gi~l~l~~~~~ 615 (659)
+..+++|+.++.|+.|||+..|..+.-+.+++ ++++++-|-++
T Consensus 46 ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~~ 89 (112)
T COG5439 46 PSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSKN 89 (112)
T ss_pred hHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCCC
Confidence 56799999999999999999999999999887 78888877653
No 44
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=81.48 E-value=2.1 Score=41.67 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc-----CChhHHHHHHhcCCCccccCCCccccCHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN-----PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~ 646 (659)
.++-+.+|+|++-++.-.++--=.|..+.+++.+.++.++. -+..+.+.|++.| |. +.++.+|.+.-.|.++
T Consensus 6 ~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlg-f~--v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLG-FD--VSEEEIFTSLPAARQY 82 (262)
T ss_pred ccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhC-CC--ccHHHhcCccHHHHHH
Confidence 47889999999999987777777888899998899998873 2356788899999 73 3456799999999999
Q ss_pred Hhh
Q 006141 647 LSS 649 (659)
Q Consensus 647 ~~~ 649 (659)
+++
T Consensus 83 ~~~ 85 (262)
T KOG3040|consen 83 LEE 85 (262)
T ss_pred HHh
Confidence 975
No 45
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=77.84 E-value=6.2 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHHhhcCChh
Q 006141 435 PNVVLGAIIVTAVVGLIDVP 454 (659)
Q Consensus 435 P~~vLa~ili~~~~~li~~~ 454 (659)
|..++.++++..++..+++.
T Consensus 343 ~~lv~~g~i~~~gi~~i~~~ 362 (389)
T PF00860_consen 343 PLLVLFGMIMMSGIRNIDWV 362 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhHhheec
Confidence 55555555555665555443
No 46
>PRK11660 putative transporter; Provisional
Probab=76.38 E-value=37 Score=39.06 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=119.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCC
Q 006141 328 LKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGA 407 (659)
Q Consensus 328 ~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~ 407 (659)
++.....+..++..+++..+.++....+.++..+++.+.+-+..-.=.+.=++.++|++.++-..+-+..+.....+++-
T Consensus 275 ~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~l 354 (568)
T PRK11660 275 WDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPI 354 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHH
Confidence 34445677888888888888888888887777788888888888888899999999999988877888888888888888
Q ss_pred CchhhHHHHHHHHHHH--HHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHhcCCchhHHHHH-HHhhhhhhhhhhh
Q 006141 408 KTAVSNVVMSVTVMVT--LLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIWKIDKFDFLVML-CAFLGVVFISVQE 484 (659)
Q Consensus 408 ~T~la~i~~a~~~ll~--ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~~~~~~d~~v~~-~t~~~~~~~~~~~ 484 (659)
-+=.++++..+.+++. ++-.-|.-..=+.-+.+++-+.-.-.+.+ .+++..|.+..-+++++ .+.+.-+..|+..
T Consensus 355 a~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~ 432 (568)
T PRK11660 355 SAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD--LLRHAPKDDIIVMLLCMSLTVLFDMVIAISV 432 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888777766555 33344544444444555555433322222 23444455556665544 5666678889999
Q ss_pred hHHHHHHHHHHHH
Q 006141 485 GLAIAVGISIFKI 497 (659)
Q Consensus 485 Gl~~gv~~s~~~~ 497 (659)
|+.+++++-+...
T Consensus 433 Gi~~s~~~~~~~~ 445 (568)
T PRK11660 433 GIVLASLLFMRRI 445 (568)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998866555
No 47
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=75.87 E-value=8.6 Score=33.26 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=55.8
Q ss_pred cEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHH---HHcCCEE
Q 006141 532 GFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAM---EKKGVEL 608 (659)
Q Consensus 532 ~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~---~~~gi~l 608 (659)
...++++.|.=+=-|+..|-+.+.+|+++--+ ...+.+.+++ .+.|+++|..++|.++.+.+ .++|.++
T Consensus 8 ~~g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~-------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V 79 (99)
T PF09345_consen 8 DTGRLEISGESYPENAFAFYQPILDWLEAYLA-------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKV 79 (99)
T ss_pred cCCEEEEecccCccCHHHHHHHHHHHHHHHHh-------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcE
Confidence 34578889998889999999999999876432 1356688888 58999999999999988887 4556666
Q ss_pred EEE
Q 006141 609 VLV 611 (659)
Q Consensus 609 ~l~ 611 (659)
.+-
T Consensus 80 ~v~ 82 (99)
T PF09345_consen 80 TVN 82 (99)
T ss_pred EEE
Confidence 543
No 48
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=73.59 E-value=18 Score=40.01 Aligned_cols=54 Identities=11% Similarity=-0.157 Sum_probs=31.3
Q ss_pred hhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHH
Q 006141 371 NKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTL 424 (659)
Q Consensus 371 n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~l 424 (659)
++++..--.++=++++++++-++...+-.+-|...=+-|+.++-.....-...+
T Consensus 274 ~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~il 327 (433)
T PRK11412 274 NTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVMC 327 (433)
T ss_pred CcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 446666667777788887776655444444444444456666665554444333
No 49
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=73.55 E-value=9.4 Score=39.53 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=63.6
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC-----hhHHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL-----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
...+++||.+|-..-...+.--.+..+.+++.|.++.++--+ ++-.+++++-| +.. ++++++|.+...+..+.
T Consensus 22 ~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG-~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLG-FNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred cCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhC-ccc-cCcccccChHHHHHHHH
Confidence 789999999998887777777788899999999999887432 56678889999 765 77889999999888888
Q ss_pred hhhh
Q 006141 648 SSTI 651 (659)
Q Consensus 648 ~~~~ 651 (659)
++..
T Consensus 100 k~~~ 103 (306)
T KOG2882|consen 100 KKRK 103 (306)
T ss_pred HHhC
Confidence 6655
No 50
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=69.41 E-value=33 Score=38.05 Aligned_cols=109 Identities=11% Similarity=0.157 Sum_probs=69.0
Q ss_pred HHHHHHHHhhHHH----HHHHhC--CCc--chhhhhhhhhhhhhhhccCCCccccchh-hHHHHHHHHHHhhccCCCCCh
Q 006141 100 LTIASLAIPQGIS----YAKLAN--LPP--IVGLYSSFVPPLVYTVLGSSRDLAVGPV-SIASLIMGSMLRQEVSPTQNP 170 (659)
Q Consensus 100 ltv~~~~iPq~~a----ya~lag--lpp--~~GLyss~v~~liy~~fGss~~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~ 170 (659)
+..+++..-++++ .+...| .++ .-|+.+-.+++++-++||+++....+-. ++.+. .+
T Consensus 253 ~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~------T~-------- 318 (429)
T TIGR03616 253 APVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAV------TK-------- 318 (429)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeee------cC--------
Confidence 3344444444443 333444 333 3788999999999999998765444321 11100 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhccHhHHHHHHHHHHHHHHHHhhHh
Q 006141 171 VLFLQLAFTATFFGGLVQASLGLLR-LGFIIDFLSKATLIGFMAGAAIIVSLQQLKS 226 (659)
Q Consensus 171 ~~~~~~a~~~t~l~Gi~~~~lg~~r-lg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~ 226 (659)
.+. -.+...+|++.+++|++. ++.+...+|.||++|.+...--.+....++.
T Consensus 319 -v~S---R~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~~ 371 (429)
T TIGR03616 319 -VYS---TLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGARI 371 (429)
T ss_pred -cch---HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 024455688888888885 7889999999999998887766777777773
No 51
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.85 E-value=53 Score=30.15 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=49.4
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHc---CCEEEEEcCC-------hhHHHHHHhcCCCccccCCCccccCHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK---GVELVLVNPL-------AEVLEKLQRSDDSGDFKRPDSLYLTVG 641 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~---gi~l~l~~~~-------~~v~~~L~~~g~~~~~~~~~~if~s~~ 641 (659)
+++.|.+-+..- +....+.++.++++++ ++.+.+-|.- ++..+.+++.| +...++... +.+
T Consensus 54 ~~d~V~lS~~~~-----~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G-~~~vf~~~~---~~~ 124 (137)
T PRK02261 54 DADAILVSSLYG-----HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMG-FDRVFPPGT---DPE 124 (137)
T ss_pred CCCEEEEcCccc-----cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcC-CCEEECcCC---CHH
Confidence 366776644333 4555566667777766 6777777753 56778999999 865554322 789
Q ss_pred HHHHHHhhhhcc
Q 006141 642 EAVASLSSTIKA 653 (659)
Q Consensus 642 ~Av~~~~~~~~~ 653 (659)
+.+++.+..+++
T Consensus 125 ~i~~~l~~~~~~ 136 (137)
T PRK02261 125 EAIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHHhcc
Confidence 999998887765
No 52
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=65.06 E-value=9.7 Score=39.42 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC-----ChhHHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP-----LAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
.+.+++|+.++=+-+..-+.-..+..++++++|++++++.- ..+..+.|++.| +... .++++.+..-+.++.
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G-~~~~--~~~i~ts~~~~~~~l 78 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLG-FNGL--AEQLFSSALCAARLL 78 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCCC--hhhEecHHHHHHHHH
Confidence 57899999998877666565567888889999999987743 234557888899 7533 467999888877777
Q ss_pred hh
Q 006141 648 SS 649 (659)
Q Consensus 648 ~~ 649 (659)
++
T Consensus 79 ~~ 80 (279)
T TIGR01452 79 RQ 80 (279)
T ss_pred Hh
Confidence 65
No 53
>PRK10444 UMP phosphatase; Provisional
Probab=62.87 E-value=14 Score=37.63 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=54.7
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC-----hhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 574 RFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL-----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 574 ~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
+.+++|+.++-+-+-.-+.--.+..+.++++|++++++.-+ .+..+.|+..| +. +.+++++.+.+.+.++..
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G-~~--~~~~~i~ts~~~~~~~L~ 78 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAG-VD--VPDSVFYTSAMATADFLR 78 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC-CC--CCHhhEecHHHHHHHHHH
Confidence 57899999988777555565668888999999999887433 45678888888 63 345678888777777776
Q ss_pred h
Q 006141 649 S 649 (659)
Q Consensus 649 ~ 649 (659)
+
T Consensus 79 ~ 79 (248)
T PRK10444 79 R 79 (248)
T ss_pred h
Confidence 5
No 54
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=62.04 E-value=1.3e+02 Score=32.80 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChh-------HHHHHhHhHhhhhccCcccccccchhhHHHhh---cCC
Q 006141 338 VMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNK-------EMIAIGVMNIVGSSTSCYITTGAFSRSAVNHN---AGA 407 (659)
Q Consensus 338 ~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~-------El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~---~G~ 407 (659)
.+..+++.+++++..+.++.-.-++.-| .|+.| -.++.|+++++=|..-=+|...+.|--....- .+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 5566777888888888776555444333 34444 44778888888888888999888882222111 221
Q ss_pred Cchhh-----HHHHHHHHHHHHH--HhhHHHhhhchhHHHHHHH
Q 006141 408 KTAVS-----NVVMSVTVMVTLL--FLMPLFQYTPNVVLGAIIV 444 (659)
Q Consensus 408 ~T~la-----~i~~a~~~ll~ll--~l~~l~~~iP~~vLa~ili 444 (659)
-.++ .+++|+++++..+ .+..+.+.||.++.++++-
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 2243 3444444444333 3667889999999999873
No 55
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=56.28 E-value=29 Score=36.15 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCCccChHHH----HHHHHHHHHHHHcCCEEEEEc--CChhHHHHHHhcCCCcccc
Q 006141 571 SSLRFVILEMSAVSAIDTSGT----SFFKDLRKAMEKKGVELVLVN--PLAEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi----~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~ 631 (659)
+..+.+++|+.+.=.=|..-+ ....+..++++++|+.+.++. .++.+.+.|+..| +.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lG-Ld~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVK-LDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcC-CCccc
Confidence 357899999988766665543 567888999999999999996 7788899999999 87644
No 56
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=56.07 E-value=22 Score=36.08 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=53.5
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc-----CChhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 574 RFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN-----PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 574 ~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ...++.+.|+..| +. ...+.++.+...+.++..
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g-~~--~~~~~iit~~~~~~~~l~ 78 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFD-IP--ATLETVFTASMATADYMN 78 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC-CC--CChhhEeeHHHHHHHHHH
Confidence 568889888766554434434677788889999999884 3466788899988 74 245678888777777776
Q ss_pred hh
Q 006141 649 ST 650 (659)
Q Consensus 649 ~~ 650 (659)
+.
T Consensus 79 ~~ 80 (249)
T TIGR01457 79 DL 80 (249)
T ss_pred hc
Confidence 53
No 57
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=55.91 E-value=92 Score=31.94 Aligned_cols=169 Identities=11% Similarity=0.013 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHH-hhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeecccc-CCCCCCccccccchhhHH
Q 006141 259 LMGFCFLVFLLLT-RHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQE-GLNPPSWNMLKFHGSHLG 336 (659)
Q Consensus 259 ~ig~~~l~~l~~~-~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip~-gl~~p~~~~~~~~~~~~~ 336 (659)
+..++.+.+.... ++..+++.....-+....+++.+++.....-...-..--++...+|. .+|...+ +++...+.+.
T Consensus 73 ~~~l~~l~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~-~~~~~~~~~~ 151 (280)
T PF00916_consen 73 LVALVFLLIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDI-SWSLILDLLP 151 (280)
T ss_pred hHHHHHHhhhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCccccc-ccccccccch
Confidence 3334444433322 33444444444444545556655555554432211110111222443 4542122 2233345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHH
Q 006141 337 LVMKTGLITGIISLTEGIAVGRTFAALKNYQVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVM 416 (659)
Q Consensus 337 ~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~ 416 (659)
.++..+++..+.+....-+.++....+.+.+-+.--.=.+.=++.++||+-++...+-+..+-....++..-+-+++++.
T Consensus 152 ~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~ 231 (280)
T PF00916_consen 152 TALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFV 231 (280)
T ss_pred hHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHH
Confidence 77778888888888887777777777777777777777888899999999999888888888888999888888898888
Q ss_pred HHHHHHHHHHhh
Q 006141 417 SVTVMVTLLFLM 428 (659)
Q Consensus 417 a~~~ll~ll~l~ 428 (659)
.++++...-++.
T Consensus 232 l~~l~~~~~~l~ 243 (280)
T PF00916_consen 232 LLVLLFLAPLLA 243 (280)
T ss_pred HHHHHHHHHHHH
Confidence 887766655544
No 58
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=55.21 E-value=20 Score=36.57 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=54.5
Q ss_pred ceEEEEEecCCCccChH----HHHHHHHHHHHHHHcCCEEEEEcC---C--hhHHHHHHhcCCCccccCCCccccCHHHH
Q 006141 573 LRFVILEMSAVSAIDTS----GTSFFKDLRKAMEKKGVELVLVNP---L--AEVLEKLQRSDDSGDFKRPDSLYLTVGEA 643 (659)
Q Consensus 573 ~~~vILD~s~V~~IDss----gi~~L~~l~~~~~~~gi~l~l~~~---~--~~v~~~L~~~g~~~~~~~~~~if~s~~~A 643 (659)
++.+++|+.++-+-+.. .+..-.+..++++++|++++++.- + +++.+.|+..| +. +.+++++.+...+
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g-~~--~~~~~i~ts~~~~ 77 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLG-FD--ISEDEVFTPAPAA 77 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcC-CC--CCHHHeEcHHHHH
Confidence 36789999988765544 344455666778889999988852 2 35788899999 74 4567899988887
Q ss_pred HHHHhh
Q 006141 644 VASLSS 649 (659)
Q Consensus 644 v~~~~~ 649 (659)
.++.++
T Consensus 78 ~~~l~~ 83 (257)
T TIGR01458 78 RQLLEE 83 (257)
T ss_pred HHHHHh
Confidence 777765
No 59
>PLN02645 phosphoglycolate phosphatase
Probab=53.45 E-value=45 Score=35.12 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC-C----hhHHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP-L----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~-~----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
.+.+++|+.++-+-+..-+.--.+..++++++|++++++.- + .++.+.|+..| +. ...+.++.+...+..+.
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lG-i~--~~~~~I~ts~~~~~~~l 104 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLG-LN--VTEEEIFSSSFAAAAYL 104 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCC-CC--CChhhEeehHHHHHHHH
Confidence 78999999998877665555557888889999999987743 2 45667788888 74 23456777765554444
Q ss_pred h
Q 006141 648 S 648 (659)
Q Consensus 648 ~ 648 (659)
+
T Consensus 105 ~ 105 (311)
T PLN02645 105 K 105 (311)
T ss_pred H
Confidence 4
No 60
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=52.63 E-value=1.6e+02 Score=26.11 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=67.1
Q ss_pred CcEEEEEeccc-eEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCC--ccChHHHHHHHHHHHHHHHcCCE
Q 006141 531 PGFLILSIEAP-INFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVS--AIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 531 ~~i~I~rl~g~-L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~--~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
+++.+..+.+. .--.+.+...+-+...-+ .....+++|-+.++ |.|-+- +.--++.+.+...+++
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~-----------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ik 71 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYE-----------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYRIK 71 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHH-----------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhcee
Confidence 45556555433 444555555554444422 24788999988775 566554 5667888999999999
Q ss_pred EEEEc------CChhHHHHHHhcCCCccccCCCccccCHHHHHHH
Q 006141 608 LVLVN------PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 608 l~l~~------~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~ 646 (659)
+.++| .+...++....++ =.+.+ ++++|.+||+++
T Consensus 72 lAivGD~s~~~~S~~l~dfi~EsN-~G~~~---~F~~~~~eA~~~ 112 (113)
T PF13788_consen 72 LAIVGDFSAYATSKSLRDFIYESN-RGNHF---FFVPDEEEAIAW 112 (113)
T ss_pred EEEEEcccccccchhHHHHHHHhc-CCCeE---EEECCHHHHHhh
Confidence 99983 4566777777776 33333 799999999986
No 61
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=50.84 E-value=1.1e+02 Score=31.53 Aligned_cols=128 Identities=13% Similarity=0.213 Sum_probs=61.5
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHh-CCCcchhhhhhhhhhhhhhhccCCCccccc---hhhHHHHHHHHHHhhc---
Q 006141 91 LFKSDIISGLTIASLAIPQGISYAKLA-NLPPIVGLYSSFVPPLVYTVLGSSRDLAVG---PVSIASLIMGSMLRQE--- 163 (659)
Q Consensus 91 ~l~~Di~aGltv~~~~iPq~~aya~la-glpp~~GLyss~v~~liy~~fGss~~~~~G---p~a~~sl~~~~~v~~~--- 163 (659)
-+.+|+..|+.+|...=-.-|+..... ..||-..+ ++.++..+...-|.+....++ |.+.+...+.......
T Consensus 41 LIlGD~~tGliiGatleL~~lG~~~iGga~ppD~~~-a~iigta~AI~sG~~~e~AialAvPva~Lg~~l~~~~~~~~s~ 119 (265)
T TIGR00822 41 LILGDLKTGIILGGTLELIALGWMNVGAAQAPDPAL-ASIISTILVISGHQSIGTGIALALPLAAAGQVLTIFVRTITVL 119 (265)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCccccccCCccHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888877754433333333333 35666543 455555444445556655554 5554443332221111
Q ss_pred ----cC---CCCChhh--HHHHH--HHHHHHHHHHH---HHHHHhhhhhhhhhccHhHHHHHHHHHHHHH
Q 006141 164 ----VS---PTQNPVL--FLQLA--FTATFFGGLVQ---ASLGLLRLGFIIDFLSKATLIGFMAGAAIIV 219 (659)
Q Consensus 164 ----~~---~~~~~~~--~~~~a--~~~t~l~Gi~~---~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i 219 (659)
.+ +..|... ..+.. ....++-.+.- +.+|---...+.+.+|+.+..|+..+.|+.=
T Consensus 120 ~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v~~Gl~vaggmLP 189 (265)
T TIGR00822 120 FQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVVTHGLQIAGGIIV 189 (265)
T ss_pred HHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHH
Confidence 01 1122111 11111 11111222222 2233334577899999999999888777653
No 62
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=49.19 E-value=52 Score=36.82 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=61.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
.+++.||||=- =..+|+.|-++|.+...+.+++|+.++++..+|.+....++.= +.+ -|.-+.|-..||-++....
T Consensus 489 G~P~lvVLDEP-NsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil-vl~-~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLDEP-NSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL-VLQ-DGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEecCC-CCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee-eec-CChHHhcCCHHHHHHHhcC
Confidence 35789999954 5779999999999999999999999999999999877666544 322 1444788898999888754
No 63
>PRK11778 putative inner membrane peptidase; Provisional
Probab=49.06 E-value=1.4e+02 Score=31.90 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=47.6
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCc-cChHHHHHHHHHHHHHHHcCCEE
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSA-IDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~-IDssgi~~L~~l~~~~~~~gi~l 608 (659)
.|.+.+++++|++.-.....+++.+...++... + .+.|+|+...-.. ++.++... ...+++++.|+.+
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~--------~-~~aVvLridSpGG~v~~s~~a~--~~l~~lr~~~kpV 157 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVAK--------P-GDEVLLRLESPGGVVHGYGLAA--SQLQRLRDAGIPL 157 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhcc--------C-CCeEEEEEeCCCCchhHHHHHH--HHHHHHHhcCCCE
Confidence 478999999999998888888888877664331 1 2579999865444 34444322 2245677777777
Q ss_pred EE
Q 006141 609 VL 610 (659)
Q Consensus 609 ~l 610 (659)
+.
T Consensus 158 va 159 (330)
T PRK11778 158 TV 159 (330)
T ss_pred EE
Confidence 65
No 64
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=48.72 E-value=2.7e+02 Score=29.07 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=75.5
Q ss_pred ccCcCCCCChhhhh---hhHHHHHHHHHHHHhhHHHHHHHhCCCcch-----hhhhhhhhhhhhhhccCCCccccchhhH
Q 006141 80 ILEWGPNYSFKLFK---SDIISGLTIASLAIPQGISYAKLANLPPIV-----GLYSSFVPPLVYTVLGSSRDLAVGPVSI 151 (659)
Q Consensus 80 ~~~w~~~y~~~~l~---~Di~aGltv~~~~iPq~~aya~laglpp~~-----GLyss~v~~liy~~fGss~~~~~Gp~a~ 151 (659)
+..|+-.|=...+. -+-......+.+.+|....|-.-.+.-... -+..+++-++..+.-=+...+..-|+..
T Consensus 118 iss~iG~YiLapl~~~i~~~~gAaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~l~sePf~~ 197 (299)
T PF05884_consen 118 ISSFIGGYILAPLFGIIFGPFGAAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLYLSSEPFIA 197 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcHHH
Confidence 44444455443322 233345566778899988883323322222 2234445454444332445666669999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHHH
Q 006141 152 ASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVSL 221 (659)
Q Consensus 152 ~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~~ 221 (659)
+..++.+.+-.++.... +.+......++-.+=++.+++|.+ .|.+.. |.-++.++-+.+++..+.
T Consensus 198 LT~iv~sfi~~~i~~~~--~~R~~lLg~~vg~s~l~H~~iG~i-~G~Ls~--~YllLt~lYTl~s~~~IQ 262 (299)
T PF05884_consen 198 LTPIVSSFIYPLIAGHG--TNRQKLLGIVVGTSFLFHLLIGII-FGSLSF--SYLLLTALYTLASIAPIQ 262 (299)
T ss_pred HHHHHHHHHHHHHccCC--cchHHHHHHHHHHHHHHHHHHHHH-HccccH--HHHHHHHHHHHHHHHHHH
Confidence 99888887776654332 222222222222222345566655 466654 778888888888877764
No 65
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=48.39 E-value=44 Score=34.46 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=61.2
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC----hh-HHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL----AE-VLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~----~~-v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
.+.+++|+-+|-+-+...+.-=.+..+.++++|++++|.--+ ++ +.++|+.-+ ..+. ..++++.|-+.+.++.
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~-~~~~-~~~~i~TS~~at~~~l 85 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLG-GVDV-TPDDIVTSGDATADYL 85 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhc-CCCC-CHHHeecHHHHHHHHH
Confidence 678999999999999999999999999999999999877322 33 777788745 3332 3467899988888887
Q ss_pred hhhhc
Q 006141 648 SSTIK 652 (659)
Q Consensus 648 ~~~~~ 652 (659)
.++..
T Consensus 86 ~~~~~ 90 (269)
T COG0647 86 AKQKP 90 (269)
T ss_pred HhhCC
Confidence 76554
No 66
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=45.93 E-value=60 Score=32.64 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=51.9
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEE-cCChh---HHHHHHhcCCCcc-ccCCCccccCHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLV-NPLAE---VLEKLQRSDDSGD-FKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~-~~~~~---v~~~L~~~g~~~~-~~~~~~if~s~~~Av~~ 646 (659)
+.+.+++|+.++-+-...-..--.++.++++++|+++.++ |...+ ..+.|+..| +.. .+ +.++.+.+.+.+.
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~g-l~~~~~--~~Ii~s~~~~~~~ 83 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLG-INADLP--EMIISSGEIAVQM 83 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCC-CCcccc--ceEEccHHHHHHH
Confidence 3788999999887766555667788889999999999876 43222 226788899 754 43 3577776655554
Q ss_pred Hh
Q 006141 647 LS 648 (659)
Q Consensus 647 ~~ 648 (659)
.+
T Consensus 84 l~ 85 (242)
T TIGR01459 84 IL 85 (242)
T ss_pred HH
Confidence 44
No 67
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=45.80 E-value=1.1e+02 Score=30.11 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=43.9
Q ss_pred cEEEEEeccceEEecc-------hHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHc
Q 006141 532 GFLILSIEAPINFANT-------TYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK 604 (659)
Q Consensus 532 ~i~I~rl~g~L~F~na-------~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~ 604 (659)
+|.++.+.|+|.-.+. +.+.+.+++..+ +++++.|+|+... ...|.+....+.+..+.+++.
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~~ 69 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARL----------DPKVKAIVLRVNS-PGGSVTASEVIRAELAAARAA 69 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhh----------CCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHhC
Confidence 4677788888766554 234444433321 2568999998654 567887777777777777776
Q ss_pred CCEEEEE
Q 006141 605 GVELVLV 611 (659)
Q Consensus 605 gi~l~l~ 611 (659)
++.++-.
T Consensus 70 ~kpVia~ 76 (211)
T cd07019 70 GKPVVVS 76 (211)
T ss_pred CCCEEEE
Confidence 6655543
No 68
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=44.63 E-value=1.7e+02 Score=29.57 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=62.3
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHhC-CCcchhhhhhhhhhhhhhhccCCCccccc---hhhHHHHHHHHHHhhc---
Q 006141 91 LFKSDIISGLTIASLAIPQGISYAKLAN-LPPIVGLYSSFVPPLVYTVLGSSRDLAVG---PVSIASLIMGSMLRQE--- 163 (659)
Q Consensus 91 ~l~~Di~aGltv~~~~iPq~~aya~lag-lpp~~GLyss~v~~liy~~fGss~~~~~G---p~a~~sl~~~~~v~~~--- 163 (659)
.+.+|+..|+.+|...=-.-|+.....| .||... +++.++..+...-|......+. |.+.+...+.......
T Consensus 41 lilGD~~tGl~iGa~leL~~lG~~~~Gga~ppd~~-~a~ii~ta~ai~sg~~~~~avalAvPv~~lg~~l~~~~~~~n~~ 119 (238)
T PF03609_consen 41 LILGDVQTGLIIGATLELMYLGVVPIGGAVPPDYS-SAAIIGTALAILSGQDPEVAVALAVPVGILGQQLDNLLRTINSF 119 (238)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcccccCcCCCchh-HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678998998888755444455444444 455554 3456666555555555544443 3333332222221111
Q ss_pred ----cC---CCCChhh--HHHHH--HHHHHHH----HHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHH
Q 006141 164 ----VS---PTQNPVL--FLQLA--FTATFFG----GLVQASLGLLRLGFIIDFLSKATLIGFMAGAAII 218 (659)
Q Consensus 164 ----~~---~~~~~~~--~~~~a--~~~t~l~----Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~ 218 (659)
.+ ++.|... ..+.. ....+.. ..+.+.+|---...+.+.+|+-+..|+..+.|+.
T Consensus 120 ~~~~adk~ae~gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl~vagg~L 189 (238)
T PF03609_consen 120 FVHRADKAAEEGNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGLNVAGGML 189 (238)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00 1112111 11111 1111112 2222333333357788999999999887776654
No 69
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.54 E-value=83 Score=28.01 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=47.7
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHc---CCEEEEEc-CChhHHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK---GVELVLVN-PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~---gi~l~l~~-~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
+.+.|.+-++ |..-...+.++.+.++++ ++.+.+.+ ..++..+.++..| +.+.++ -=.+.++.+.+.
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G-~d~~~~---~~~~~~~~~~~~ 120 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMG-VAEIFG---PGTSIEEIIDKI 120 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCC-CCEEEC---CCCCHHHHHHHH
Confidence 3677777444 566677788888888887 45655554 4556678899999 888774 445677777766
Q ss_pred h
Q 006141 648 S 648 (659)
Q Consensus 648 ~ 648 (659)
+
T Consensus 121 ~ 121 (122)
T cd02071 121 R 121 (122)
T ss_pred h
Confidence 4
No 70
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=43.22 E-value=1.1e+02 Score=29.96 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred EEEEEeccceE---EecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE
Q 006141 533 FLILSIEAPIN---FANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV 609 (659)
Q Consensus 533 i~I~rl~g~L~---F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~ 609 (659)
+.+++++|.+. -.....+.+.+.+..++ ++++.|+++... ..-|....+.+.+..+.+++.+..++
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d----------~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpvi 70 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARED----------DSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPVV 70 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHhC----------CCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 67889999998 55666677666654322 468999998865 45677777777777777776555554
No 71
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.61 E-value=56 Score=29.93 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHcCC--EEEEEcCC-----hh---HHHHHHhcCCCccccCCCccccCHHHHHHHHhhhhc
Q 006141 588 TSGTSFFKDLRKAMEKKGV--ELVLVNPL-----AE---VLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTIK 652 (659)
Q Consensus 588 ssgi~~L~~l~~~~~~~gi--~l~l~~~~-----~~---v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~~ 652 (659)
.+....+.++.+.++++|. ..++++-. ++ +.+.|++.| +...|++.. +.++.+++.+.+++
T Consensus 63 ~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G-v~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG-FDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred ccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC-CCEEECcCC---CHHHHHHHHHHHhc
Confidence 5666678888888888763 33555543 22 456799999 876665433 77999999888775
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.93 E-value=69 Score=29.20 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=48.1
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCC--EEEEEc--CChhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGV--ELVLVN--PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi--~l~l~~--~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
.+.+.+ +..|.+-...+.++.++++++|. -.++++ ..++-.+.|+..| +.+.++. =.+++|-+++..
T Consensus 54 adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~G-vd~~~~~---gt~~~~i~~~l~ 124 (132)
T TIGR00640 54 VHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMG-VAEIFGP---GTPIPESAIFLL 124 (132)
T ss_pred CCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCC-CCEEECC---CCCHHHHHHHHH
Confidence 556665 56677777889999999999853 234555 5566678899999 9888753 346666666655
Q ss_pred hh
Q 006141 649 ST 650 (659)
Q Consensus 649 ~~ 650 (659)
..
T Consensus 125 ~~ 126 (132)
T TIGR00640 125 KK 126 (132)
T ss_pred HH
Confidence 43
No 73
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=40.84 E-value=1.3e+02 Score=29.63 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=39.8
Q ss_pred EEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHH
Q 006141 533 FLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAME 602 (659)
Q Consensus 533 i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~ 602 (659)
|.+++++|.+. .+.+.+.+.+.+..++ ++++.|+|+... ..-|....+-+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~d----------~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKDD----------KSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhhC----------CCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 6667777776665322 468899998864 3346666666666555555
No 74
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=40.48 E-value=55 Score=33.10 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=34.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHHHHHHh---CCCcchhhhhhhhhhhhhh
Q 006141 89 FKLFKSDIISGLTIASLAIPQGISYAKLA---NLPPIVGLYSSFVPPLVYT 136 (659)
Q Consensus 89 ~~~l~~Di~aGltv~~~~iPq~~aya~la---glpp~~GLyss~v~~liy~ 136 (659)
.+.+++.+.+++-+.+-.+|-|++|+.++ |+++. ++.+...++|+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~---e~~lmS~~iyA 56 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPL---EAILMSLLIYA 56 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHc
Confidence 35788888999999999999999999986 55544 44556666775
No 75
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=40.28 E-value=2.1e+02 Score=29.50 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=19.8
Q ss_pred HHhhhhhhhhhccHhHHHHHHHHHHHH
Q 006141 192 GLLRLGFIIDFLSKATLIGFMAGAAII 218 (659)
Q Consensus 192 g~~rlg~l~~~lp~~vi~Gf~~gigl~ 218 (659)
|---...+.+.+|.-++.|+..+-|+.
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmL 189 (267)
T PRK09757 163 AQGAMQALVKAMPAWLTHGFEVAGGIL 189 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 333357788999999988887766654
No 76
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=38.99 E-value=1.1e+02 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=44.5
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcC
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSD 625 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g 625 (659)
.++++.|| .....+|.-++.=+.++.+.++++|+-++++ ..+|++.|..+.
T Consensus 157 ~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLIT--DHNVREtL~i~d 207 (243)
T COG1137 157 NPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT--DHNVRETLDICD 207 (243)
T ss_pred CCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEc--cccHHHHHhhhh
Confidence 57899999 5678889999999999999999999999999 556888888665
No 77
>PHA00736 hypothetical protein
Probab=38.73 E-value=1.6e+02 Score=23.09 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCcchhhhh-hhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHH
Q 006141 110 GISYAKLANLPPIVGLYS-SFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLV 187 (659)
Q Consensus 110 ~~aya~laglpp~~GLys-s~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~ 187 (659)
+++.|+-.|+.|+.+..- -..-++.|-.-|.-+.+.+|-.+...++.-..+ ..+|.++....+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdfl----------plfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFL----------PLFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 566777779988877542 334556677777777777776666666554433 24566666666666654
No 78
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=38.33 E-value=65 Score=30.02 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=39.1
Q ss_pred EEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHH
Q 006141 535 ILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAME 602 (659)
Q Consensus 535 I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~ 602 (659)
+++++|+++-...+++.+.++++-++ ++.+.|+|+..... -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d----------~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEAD----------NSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhC----------CCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 57899999998888888888776332 35788988876433 36555555555555544
No 79
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=37.46 E-value=1.4e+02 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=25.3
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV 609 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~ 609 (659)
++++.|+||..... -|..+...+.+..+++++ +..++
T Consensus 41 ~~i~~Vvl~~~s~g-g~~~~~~~l~~~l~~~~~-~KpVi 77 (214)
T cd07022 41 PDVRAIVLDIDSPG-GEVAGVFELADAIRAARA-GKPIV 77 (214)
T ss_pred CCCcEEEEEEeCCC-CcHHHHHHHHHHHHHHhc-CCCEE
Confidence 46899999986643 467777777777777765 44433
No 80
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=37.09 E-value=85 Score=32.83 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCceEEEEEecCCCccChHHH----HHHHHHHHHHHHcCCEEEEE--cCChhHHHHHHhcCCCcccc
Q 006141 571 SSLRFVILEMSAVSAIDTSGT----SFFKDLRKAMEKKGVELVLV--NPLAEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi----~~L~~l~~~~~~~gi~l~l~--~~~~~v~~~L~~~g~~~~~~ 631 (659)
+..+.+++|+.+.-.=|-.-+ ....+..++++++|+.+.++ +.++.+.+.|+..| +.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lg-L~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETK-LEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcC-CCccc
Confidence 346889999977544443322 34567778888999999988 46788999999999 76543
No 81
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=34.78 E-value=5.9e+02 Score=29.84 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=10.8
Q ss_pred HHhhhhccccCcCCCCCh-hhhhhhH
Q 006141 72 LAAQYIFPILEWGPNYSF-KLFKSDI 96 (659)
Q Consensus 72 ~~~~~~~P~~~w~~~y~~-~~l~~Di 96 (659)
....|++|++= .|+- +.++.+-
T Consensus 55 ~a~fyfLPi~i---a~saak~f~~n~ 77 (639)
T PRK15083 55 PMITYLLPLLI---GYTGGKLVGGER 77 (639)
T ss_pred HHHHHHHHHHH---HHHHHHHhCCCH
Confidence 34556666532 2343 4555555
No 82
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=34.63 E-value=2.5e+02 Score=28.87 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=44.4
Q ss_pred cCChhHHHHHhHhHhhhhccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHHHHhhHHHh
Q 006141 368 VDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTLLFLMPLFQ 432 (659)
Q Consensus 368 ~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~ll~l~~l~~ 432 (659)
+-..-||.++|.+|+-+ -..-=|.+++.-.|.....+|..++-+..-.++-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGg-avpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGG-AVPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCccc-CCCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999887 33334667888889999998887666666556555555555554444
No 83
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=34.23 E-value=1.2e+02 Score=30.98 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=41.6
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCCh-hHHHHHH
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLA-EVLEKLQ 622 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~-~v~~~L~ 622 (659)
.+++.++|| ...+.+|..+...+.++.++++++|+.++++.-.- .|.+..+
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence 357889999 77999999999999999999999999999886653 3443333
No 84
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=33.97 E-value=3.4e+02 Score=27.91 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHhhhhhhhhhccHhHHHHHHHHHHHH
Q 006141 192 GLLRLGFIIDFLSKATLIGFMAGAAII 218 (659)
Q Consensus 192 g~~rlg~l~~~lp~~vi~Gf~~gigl~ 218 (659)
|---...+.+.+|+.+..|+..+-|+.
T Consensus 163 G~~~v~~~~~~iP~~v~~GL~vaggmL 189 (262)
T PRK15065 163 GTSAVQSMLNAIPEVLTGGLNIGGGMI 189 (262)
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHhhH
Confidence 333457889999999999887776654
No 85
>PLN03211 ABC transporter G-25; Provisional
Probab=32.39 E-value=1.7e+02 Score=34.47 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCCh--hHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLA--EVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~--~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
+++.+++| +..+.+|+.....+.++.+++.++|..++++..++ ++.+.+++.- +.+. |+-..+.+.++++++.++
T Consensus 224 ~P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii-lL~~-G~iv~~G~~~~~~~~f~~ 300 (659)
T PLN03211 224 NPSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL-VLSE-GRCLFFGKGSDAMAYFES 300 (659)
T ss_pred CCCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE-EecC-CcEEEECCHHHHHHHHHH
Confidence 36789999 67899999999999999999988898888887665 3566666554 3321 332345678888888765
Q ss_pred h
Q 006141 650 T 650 (659)
Q Consensus 650 ~ 650 (659)
.
T Consensus 301 ~ 301 (659)
T PLN03211 301 V 301 (659)
T ss_pred C
Confidence 3
No 86
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=31.40 E-value=6.7e+02 Score=29.07 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=44.0
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhc
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRS 624 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~ 624 (659)
.-..++-+.+-+.++++ ..+++++|-.. +..+++++.|.+++.-++.+ .+.|+..
T Consensus 406 ~G~Gr~G~~va~~L~~~----------g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~a 460 (601)
T PRK03659 406 VGFGRFGQVIGRLLMAN----------KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAA 460 (601)
T ss_pred ecCchHHHHHHHHHHhC----------CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhc
Confidence 33445555565555432 36889999653 33455666788887776553 4677888
Q ss_pred CCCccccCCCccccCHHHHHHHHh
Q 006141 625 DDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 625 g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
| ..+------..++.++.+..++
T Consensus 461 g-i~~A~~vv~~~~d~~~n~~i~~ 483 (601)
T PRK03659 461 G-AEKAEAIVITCNEPEDTMKIVE 483 (601)
T ss_pred C-CccCCEEEEEeCCHHHHHHHHH
Confidence 8 6542110123445555555443
No 87
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=30.93 E-value=4.3e+02 Score=26.63 Aligned_cols=89 Identities=15% Similarity=0.317 Sum_probs=51.8
Q ss_pred HhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006141 116 LANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLR 195 (659)
Q Consensus 116 laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~r 195 (659)
++|=||.|||+.+.-+.+-|+++.. .+--.++++.+++.+... .+.+...|-..|=+-- ...|+
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm~~-----~~~~~i~ai~~Ga~vAa~----------v~g~ya~taylGR~~s-~~~F~ 114 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALMSA-----FGLNPILAIAIGAAVAAL----------VHGVYATTAYLGRIAS-QKRFG 114 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHH-----cCccHHHHHHHHHHHHHH----------HHHHHHHHHHhhhHhh-HhhcC
Confidence 4688899999988888888888722 222356666667666543 2333333333332211 11221
Q ss_pred ----hhhhhhhccHhHHHHHHHHHHHHHH
Q 006141 196 ----LGFIIDFLSKATLIGFMAGAAIIVS 220 (659)
Q Consensus 196 ----lg~l~~~lp~~vi~Gf~~gigl~i~ 220 (659)
++-+..-+|.-+-.+|++--++..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~F~i~~~ 143 (269)
T PF04206_consen 115 QPVYLDVLRSHTPPIMAHAFIATFCIVTI 143 (269)
T ss_pred CCeehHHHhhhchhHHHHHHHHHHHHHHH
Confidence 3445556777777777777666554
No 88
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=30.90 E-value=86 Score=30.18 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=33.9
Q ss_pred EEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHH
Q 006141 533 FLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSG 590 (659)
Q Consensus 533 i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssg 590 (659)
+.+++++|.++....+++++.+.+..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~-----------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE-----------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC-----------CCCeEEEEEECcCCCHHHH
Confidence 4689999999998888888777666432 2678888886665554443
No 89
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.09 E-value=1.9e+02 Score=25.95 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHc--CCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 587 DTSGTSFFKDLRKAMEKK--GVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 587 Dssgi~~L~~l~~~~~~~--gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
|..+.+.+..+.++++++ +..+..+=.+.-++++|+..| + -.++.+||++.+.+
T Consensus 12 ~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~-~--------~~p~~~eaL~~l~~ 67 (127)
T cd03412 12 YPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRG-I--------EVDTPEEALAKLAA 67 (127)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcC-C--------CCCCHHHHHHHHHH
Confidence 447778899999999776 567888888888888888777 2 46888888887765
No 90
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=29.38 E-value=1.4e+02 Score=29.31 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE-EEcCC-h-hHHHHHHhcCCCccccCC
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV-LVNPL-A-EVLEKLQRSDDSGDFKRP 633 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~-l~~~~-~-~v~~~L~~~g~~~~~~~~ 633 (659)
+..+++|+..+..=|..|++.+.++.+... +.+++ +++.. + .+.+.+...| ....+.+
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~G-a~gyl~K 98 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSP-LDGVLSK 98 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcC-CeEEEec
Confidence 578888888776667779988888876533 45544 44433 2 2445555566 6555544
No 91
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=29.26 E-value=1e+03 Score=28.12 Aligned_cols=121 Identities=21% Similarity=0.221 Sum_probs=64.4
Q ss_pred ccCcCCCCChh--hhhhhHH-HHHHHHHHHHhhHHHHHHH-h-----CCCcchhhhhhhhhhhhhhhccCCCccccchhh
Q 006141 80 ILEWGPNYSFK--LFKSDII-SGLTIASLAIPQGISYAKL-A-----NLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVS 150 (659)
Q Consensus 80 ~~~w~~~y~~~--~l~~Di~-aGltv~~~~iPq~~aya~l-a-----glpp~~GLyss~v~~liy~~fGss~~~~~Gp~a 150 (659)
+-+|+|.++.- .+..++. .++.++++++=..++-+.. | .+++-.=|++-.+..++-++|++=+ ..|.++
T Consensus 311 i~~g~~~~~lp~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p--~tgs~s 388 (665)
T KOG0236|consen 311 IPRGFPPPSLPPLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYP--TTGSFS 388 (665)
T ss_pred CCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEc--ccchhh
Confidence 44677777652 2223322 3566666655555555442 2 2555566777888888888886421 222222
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHH
Q 006141 151 IASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAII 218 (659)
Q Consensus 151 ~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~ 218 (659)
=. .+.... +. . -+ ...+++|++. ++.+.-++.+..|+|..++...+-.++.-
T Consensus 389 RS------av~~~s--G~--~--T~---~s~i~~~~~v-l~~l~~l~p~f~~iP~~vLaaIIi~a~~~ 440 (665)
T KOG0236|consen 389 RS------AVNIKS--GG--R--TQ---VAGIVSAALV-LLALLFLGPLFYYIPKCVLAAIIISALIG 440 (665)
T ss_pred HH------HHHhhc--CC--c--ch---HHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHhhH
Confidence 11 111110 00 0 11 2233334433 33334479999999999999977766654
No 92
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=28.91 E-value=2.1e+02 Score=31.90 Aligned_cols=113 Identities=14% Similarity=0.247 Sum_probs=60.4
Q ss_pred cCc-CCCCChhhhhhhHHHHHHHHHHHHhhHHH----HHHHhCC--Ccc----hhhhhhhhhhhhhhhccCCCccccchh
Q 006141 81 LEW-GPNYSFKLFKSDIISGLTIASLAIPQGIS----YAKLANL--PPI----VGLYSSFVPPLVYTVLGSSRDLAVGPV 149 (659)
Q Consensus 81 ~~w-~~~y~~~~l~~Di~aGltv~~~~iPq~~a----ya~lagl--pp~----~GLyss~v~~liy~~fGss~~~~~Gp~ 149 (659)
++| .|+++.. |..+=+...++++-.+++ -|.+++. ||. -|+-.-.+++++.++||+..-..+-..
T Consensus 260 ~QwG~P~f~~~----~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~E 335 (510)
T KOG1292|consen 260 FQWGPPTFSAG----LVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVE 335 (510)
T ss_pred CccCCCcccHH----HHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeecc
Confidence 456 4555643 333333333444444443 3555543 332 466667789999999997532221111
Q ss_pred hHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHhHHHHHHH
Q 006141 150 SIASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLL-RLGFIIDFLSKATLIGFMA 213 (659)
Q Consensus 150 a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~-rlg~l~~~lp~~vi~Gf~~ 213 (659)
.+--+ .+.+.. .. -+.=++|.+++++|++ |+|-+..-+|.|++.|..+
T Consensus 336 Nigll----~vTKVg-------SR-----rvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c 384 (510)
T KOG1292|consen 336 NIGLL----GVTKVG-------SR-----RVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC 384 (510)
T ss_pred ceeeE----eeeeee-------ee-----eehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 00000 001100 00 0222457788888877 4899999999999999443
No 93
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.57 E-value=1.5e+02 Score=26.61 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCEEEEE-cCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 596 DLRKAMEKKGVELVLV-NPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 596 ~l~~~~~~~gi~l~l~-~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
.+.+.+.++|++++++ +..+.-...|+..| +.-..++. .+++||++....
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~G-Ikv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAG-IKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcC-cEEEecCC---CCHHHHHHHHhc
Confidence 3567788899999988 47899999999999 75444432 899999987653
No 94
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.44 E-value=66 Score=29.75 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=10.2
Q ss_pred ccccchhHHHHHHHH
Q 006141 283 WVSAGAPLVSVILST 297 (659)
Q Consensus 283 ~i~~~~~li~vi~~t 297 (659)
.+|.|++++++++-.
T Consensus 31 ~lPiPGsViGMlLL~ 45 (141)
T PRK04125 31 PIPMPASVIGLVLLF 45 (141)
T ss_pred CCCCcHHHHHHHHHH
Confidence 367778888766553
No 95
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=27.56 E-value=6e+02 Score=25.90 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=50.4
Q ss_pred HhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006141 116 LANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLR 195 (659)
Q Consensus 116 laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~r 195 (659)
++|=||.|||+.+.-+.+-|+++.- +-..++++.+++.+... .+.+.+.|-..|=+ .-...|+
T Consensus 58 iSGEP~aygl~~ai~g~vA~~lm~~------~~~~vlAi~~Ga~vaa~----------vhg~ya~taylGR~-asq~~F~ 120 (292)
T PRK00972 58 ISGEPVAYGLWCAIAGAVAWALMAF------GLNPVLAIIVGAGVAAL----------VHGVYATTAYLGRI-ASQSKFG 120 (292)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHc------CccHHHHHHHHHHHHHH----------HHHHHHHHHHHhHH-HHHHhcC
Confidence 4688888888888888888887622 22345566666666543 23333333333322 0111111
Q ss_pred ----hhhhhhhccHhHHHHHHHHHHHHHHH
Q 006141 196 ----LGFIIDFLSKATLIGFMAGAAIIVSL 221 (659)
Q Consensus 196 ----lg~l~~~lp~~vi~Gf~~gigl~i~~ 221 (659)
++-+..-+|..+-.+|++--.+..+.
T Consensus 121 QPvylDvl~sh~~~i~~haFIa~Fci~~~~ 150 (292)
T PRK00972 121 QPVYLDVLRSHTGPIMGHAFIATFCIVTLS 150 (292)
T ss_pred CceeHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 34455667777777777776665543
No 96
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=27.46 E-value=7.4e+02 Score=25.98 Aligned_cols=28 Identities=4% Similarity=0.274 Sum_probs=22.3
Q ss_pred EEEEeccceEEecchHHHHHHHHHHHHH
Q 006141 534 LILSIEAPINFANTTYLNERILRWIEEY 561 (659)
Q Consensus 534 ~I~rl~g~L~F~na~~~~~~l~~~i~~~ 561 (659)
..+.+++.+...++..+.+++++.+++.
T Consensus 249 ~~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 249 VHIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 4456678888999999999998887665
No 97
>TIGR01113 mtrE N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit E. coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.09 E-value=6.2e+02 Score=25.69 Aligned_cols=89 Identities=19% Similarity=0.378 Sum_probs=51.7
Q ss_pred HhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006141 116 LANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLR 195 (659)
Q Consensus 116 laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~r 195 (659)
++|=||.|||+.+.-+.+-|+++-. .+--.++++.+++.+... .+.+...|-..|=+- -...|+
T Consensus 51 iSGEP~aygl~~~i~g~vA~~l~~~-----~~~~~ilAi~~Ga~vaa~----------v~~~ya~tay~GR~a-sq~~F~ 114 (283)
T TIGR01113 51 ISGEPVSYGLYCGIAGAVAYVLMSY-----FGLPPLIALAVGAVIAAL----------VHLAYATTAYLGRIA-SSATFN 114 (283)
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-hHHhcC
Confidence 4588888888888888888887721 122346666666666543 333444444433321 111111
Q ss_pred ----hhhhhhhccHhHHHHHHHHHHHHHH
Q 006141 196 ----LGFIIDFLSKATLIGFMAGAAIIVS 220 (659)
Q Consensus 196 ----lg~l~~~lp~~vi~Gf~~gigl~i~ 220 (659)
++-+..-+|+.+-.||++--++..+
T Consensus 115 QPvylDvl~~~~~~i~~haFIa~fci~~~ 143 (283)
T TIGR01113 115 QPVYLDMLTSHLGPIAGHGFIVTFCMVGV 143 (283)
T ss_pred CcchHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3455667777777778777666554
No 98
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.92 E-value=4.1e+02 Score=23.10 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=42.1
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHc---CCEEEEEcCChhH-HHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK---GVELVLVNPLAEV-LEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~---gi~l~l~~~~~~v-~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
+++.|.+-++ +......+.++.++++++ ++.+++.|..... .+.++..| + |.++.+-.+|++.+
T Consensus 50 ~pdvV~iS~~-----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G-~------D~~~~~~~~~~~~~ 117 (119)
T cd02067 50 DADAIGLSGL-----LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIG-V------DAYFGPATEAVEVL 117 (119)
T ss_pred CCCEEEEecc-----ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcC-C------eEEECCHHHHHHHH
Confidence 3677877555 333445566666666665 5777887765443 35677777 5 34677878888876
Q ss_pred h
Q 006141 648 S 648 (659)
Q Consensus 648 ~ 648 (659)
.
T Consensus 118 ~ 118 (119)
T cd02067 118 K 118 (119)
T ss_pred h
Confidence 4
No 99
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=26.90 E-value=2.6e+02 Score=28.43 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=48.2
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE-EEcCChhHHHHHHh
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV-LVNPLAEVLEKLQR 623 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~-l~~~~~~v~~~L~~ 623 (659)
.+-+.+.+.+.+.+++.++- =+-..||||++.+..-. ...-|..+.+.++++|...+ +.+++++.++.-..
T Consensus 28 ~d~~~l~~~L~~ki~~aP~F------F~~~PvVlDl~~l~~~~--~~~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~~ 99 (248)
T PRK04596 28 LDVPRLVQEMRERVTRAPKL------FGRAAVILDFGGLSQVP--DLATAKALLDGLRSAGVLPVALAYGTSEIDLLSQQ 99 (248)
T ss_pred CCHHHHHHHHHHHHHhChHh------hCCCcEEEEchhhcCcc--ccccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 45566777777766654221 12456999999986311 00126667888889997766 66777777666666
Q ss_pred cCCCc
Q 006141 624 SDDSG 628 (659)
Q Consensus 624 ~g~~~ 628 (659)
.| +-
T Consensus 100 ~g-L~ 103 (248)
T PRK04596 100 LG-LP 103 (248)
T ss_pred CC-CC
Confidence 67 53
No 100
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=26.74 E-value=2.1e+02 Score=33.25 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCCh--hHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLA--EVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~--~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
+++.+++| ...+.+|+.....+.+..+++.++|..++++-.++ ++.+.+++.- +.+. |+...+.+.+|+.++.++
T Consensus 184 ~p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~-ll~~-G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 184 DPPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII-LMAE-GRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred CCCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE-EeeC-CeEEEECCHHHHHHHHHH
Confidence 36788888 56899999999999999999988888888876664 5778888776 5442 444466777888877665
Q ss_pred h
Q 006141 650 T 650 (659)
Q Consensus 650 ~ 650 (659)
.
T Consensus 261 ~ 261 (617)
T TIGR00955 261 L 261 (617)
T ss_pred c
Confidence 4
No 101
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=26.56 E-value=1.3e+02 Score=33.00 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHh---hhhhhhh-hccHhHHHHHHHHHHHHHH
Q 006141 182 FFGGLVQASLGLL---RLGFIID-FLSKATLIGFMAGAAIIVS 220 (659)
Q Consensus 182 ~l~Gi~~~~lg~~---rlg~l~~-~lp~~vi~Gf~~gigl~i~ 220 (659)
+...++.+++|.+ |..++.| ++|.||++|++.++.+.+.
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 3334455555544 3455644 8999999999998776664
No 102
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=26.38 E-value=1.1e+02 Score=30.63 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=47.2
Q ss_pred EEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc-----CChhHHHHHHh-cCCCccccCCCccccCHHHHHHHHhh
Q 006141 576 VILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN-----PLAEVLEKLQR-SDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 576 vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~-~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
+++|+.+|-.-+..-+.-=.+..+.++++|+++.+.. ...+..+.|+. .| +. +..+.++.+...+.++.++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g-~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLG-VD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcC-CC--CCHHHeeeHHHHHHHHHHH
Confidence 3677777665444433333566677788999998873 33556677777 56 52 3456788888888887765
Q ss_pred h
Q 006141 650 T 650 (659)
Q Consensus 650 ~ 650 (659)
+
T Consensus 78 ~ 78 (236)
T TIGR01460 78 R 78 (236)
T ss_pred h
Confidence 3
No 103
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.35 E-value=4.6e+02 Score=30.58 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE--EEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV--LVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~--l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
++..+.+| +..+.+||+...-+.++.+++.+.|..++ +..|+.++.+.|++.= +... |+--.+-+.++++++.++
T Consensus 188 ~P~iLflD-EPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~-lLs~-G~~vy~G~~~~~~~ff~~ 264 (613)
T KOG0061|consen 188 DPSILFLD-EPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL-LLSE-GEVVYSGSPRELLEFFSS 264 (613)
T ss_pred CCCEEEec-CCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh-hhcC-CcEEEecCHHHHHHHHHh
Confidence 35566666 78999999999999999999998888777 4578888888887744 3221 222244455666665543
No 104
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=25.07 E-value=1.2e+02 Score=29.63 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=42.7
Q ss_pred hhhchhHHHHHHHHHHhhcC-ChhHHHHHhcCCchhHHHHHHHhhhhhhhhhhhhHHH
Q 006141 432 QYTPNVVLGAIIVTAVVGLI-DVPAAHQIWKIDKFDFLVMLCAFLGVVFISVQEGLAI 488 (659)
Q Consensus 432 ~~iP~~vLa~ili~~~~~li-~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl~~ 488 (659)
..+...+|-..+..+|+++= +...++++++.++.-..+-+.+.++++..+...+...
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788888999999986 6667889999999888888777777666544444333
No 105
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=24.83 E-value=1.3e+02 Score=33.19 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=50.0
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV 609 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~ 609 (659)
.+.+.+++++|.++=+.++++++.+++..+++ ...+|+++..=...+.+. .++.+...+..+.+.
T Consensus 25 ~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~~-----------a~~vvl~ldTPGGl~~sm----~~iv~~i~~s~vPV~ 89 (436)
T COG1030 25 EKKVYVIEIDGAIDPASADYLQRALQSAEEEN-----------AAAVVLELDTPGGLLDSM----RQIVRAILNSPVPVI 89 (436)
T ss_pred CCeEEEEEecCccCHHHHHHHHHHHHHHHhCC-----------CcEEEEEecCCCchHHHH----HHHHHHHHcCCCCEE
Confidence 35799999999999999999999888775433 678999998777776555 455566667777744
No 106
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=24.37 E-value=6.5e+02 Score=27.22 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=20.6
Q ss_pred HHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHh
Q 006141 266 VFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAF 303 (659)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~ 303 (659)
+++++.+++++|.|-..+.-+|+++++=+++.++....
T Consensus 14 ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l 51 (368)
T PF03616_consen 14 ILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLIL 51 (368)
T ss_pred HHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHH
Confidence 34455566666665333344557777655555554433
No 107
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=23.75 E-value=1e+03 Score=26.40 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhc---CChhHHHHHhcCCchhHHHHHHHhhhhhhhhhhhhHH
Q 006141 411 VSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGL---IDVPAAHQIWKIDKFDFLVMLCAFLGVVFISVQEGLA 487 (659)
Q Consensus 411 la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~l---i~~~~~~~l~~~~~~d~~v~~~t~~~~~~~~~~~Gl~ 487 (659)
-++++.++++.+.+++.+-+=...|+-.+..|.-.+.... ..+ + .+. . .-.++.-.++.++.+|++
T Consensus 135 ~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~~~i~~t~g~-----~--~p~---~-~~~~l~~~ll~P~~ig~a 203 (459)
T PF10337_consen 135 RASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIFVDIFLTYGP-----L--FPT---F-FAYTLGKTLLKPFLIGIA 203 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHhCc-----C--cCc---c-hHHHHHHHHHHHHHHHHH
Confidence 3456677777777767776777888754443332222211 110 0 001 0 223444556667778888
Q ss_pred HHHHHHHHHH
Q 006141 488 IAVGISIFKI 497 (659)
Q Consensus 488 ~gv~~s~~~~ 497 (659)
+|++++++.+
T Consensus 204 i~~~vslliF 213 (459)
T PF10337_consen 204 IALVVSLLIF 213 (459)
T ss_pred HHHHHheeec
Confidence 8888887753
No 108
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.35 E-value=2.2e+02 Score=29.18 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=38.4
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL 614 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~ 614 (659)
.++..+||| ...+.+|..-.+.|++...+++++|..+.+++.+
T Consensus 147 HePeLlILD-EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~ 189 (300)
T COG4152 147 HEPELLILD-EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189 (300)
T ss_pred cCCCEEEec-CCccCCChhhHHHHHHHHHHHHhcCCEEEEecch
Confidence 457889999 5688899999999999999999999999999765
No 109
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=23.07 E-value=2.9e+02 Score=26.03 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhCCceeeecccCCCcccccccccccccccCcEEEEEeccceEE
Q 006141 465 FDFLVMLCAFLGVVFISVQEGLAIAVGISIFKILLQITRPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILSIEAPINF 544 (659)
Q Consensus 465 ~d~~v~~~t~~~~~~~~~~~Gl~~gv~~s~~~~~~~~~~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F 544 (659)
.||..++.=.++.+ ++++++++++.-+.+..+++--.+--.+-++.|++.++.-... .
T Consensus 5 ~~yglFlaK~vTvV-------vaI~~vv~~I~~~~~k~k~~~G~L~Vt~Lne~Y~~~k~~L~~a---------------l 62 (155)
T PF08496_consen 5 YEYGLFLAKIVTVV-------VAILAVVGLIVAAAQKKKKKKGELEVTDLNERYEDMKEQLKQA---------------L 62 (155)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCCCCCCeEEEeeHHHHHHHHHHHHHHH---------------h
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccC-------CCceEEEEEecCCCccChHHHHHHHH
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQ-------SSLRFVILEMSAVSAIDTSGTSFFKD 596 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~-------~~~~~vILD~s~V~~IDssgi~~L~~ 596 (659)
-+.+.++....+.-.+.+.+.+.... +++|.-|+||.+ .||.+....|.+
T Consensus 63 l~k~e~K~~~K~~KK~~K~~~K~~k~~~k~~~~~~~r~~VldF~G--di~A~~v~~LRe 119 (155)
T PF08496_consen 63 LDKKELKAWEKAEKKEEKAKAKAEKKAAKKAKEPKPRLFVLDFKG--DIKASEVESLRE 119 (155)
T ss_pred cCHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCeEEEEecCC--CccHHHHHHHHH
No 110
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.77 E-value=1.6e+02 Score=25.61 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHH
Q 006141 260 MGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLV 300 (659)
Q Consensus 260 ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~ 300 (659)
+.+.+++-+++.+++-++++...+..++..++++++|..-+
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34445555566777778887543333333444444444433
No 111
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.73 E-value=2.8e+02 Score=26.49 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=39.7
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLE 619 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~ 619 (659)
++.+++| .....+|....+.+.+..+++.++|..++++..+.+..+
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6788888 669999999999999999999888999999988876543
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.71 E-value=2.7e+02 Score=26.75 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh---hhhccHhHHHHHHHHHHHHHHHHhhHhHh
Q 006141 178 FTATFFGGLVQASLGLLRLGFI---IDFLSKATLIGFMAGAAIIVSLQQLKSLL 228 (659)
Q Consensus 178 ~~~t~l~Gi~~~~lg~~rlg~l---~~~lp~~vi~Gf~~gigl~i~~~ql~~~l 228 (659)
..+.++.|++.++.|+.-+-.. .-.+..+.+++.+.++|+.++...+..+.
T Consensus 8 ~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 8 SIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444432221 12233445555556666666666555443
No 113
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=22.62 E-value=1e+03 Score=25.98 Aligned_cols=47 Identities=21% Similarity=0.150 Sum_probs=25.7
Q ss_pred hccCcccccccchhhHHHhhcCCCchhhHHHHHHHHHHHH--HHhhHHHhh
Q 006141 385 SSTSCYITTGAFSRSAVNHNAGAKTAVSNVVMSVTVMVTL--LFLMPLFQY 433 (659)
Q Consensus 385 s~fg~~p~~~s~srS~~~~~~G~~T~la~i~~a~~~ll~l--l~l~~l~~~ 433 (659)
|+.||.-+.++++.+.... |......--+++..+-++. +..+|+-.|
T Consensus 134 sl~GGHGtaAA~~~~f~~~--G~~~A~~va~A~ATfGlv~GgliGgpva~~ 182 (404)
T COG0786 134 SLVGGHGTAAAWGPTFEDL--GAEGATEVAMASATFGLVAGGLIGGPVARW 182 (404)
T ss_pred eecCCCchHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhHhcCcHHHHH
Confidence 5677887777777665544 7766544444444433322 135555443
No 114
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=22.58 E-value=1.5e+02 Score=31.22 Aligned_cols=52 Identities=17% Similarity=0.347 Sum_probs=36.4
Q ss_pred CceEEEEEecCCC-----------ccChHH-HHHHHHHHHHHHHcCCEEEEEcCC--hhHHHHHHh
Q 006141 572 SLRFVILEMSAVS-----------AIDTSG-TSFFKDLRKAMEKKGVELVLVNPL--AEVLEKLQR 623 (659)
Q Consensus 572 ~~~~vILD~s~V~-----------~IDssg-i~~L~~l~~~~~~~gi~l~l~~~~--~~v~~~L~~ 623 (659)
..|.+|+|+.+.- .|.... -..+.+..++++++|+.+.++.-+ +.+.+.|+.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 4789999997522 122221 245788889999999999999544 567777877
No 115
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=22.47 E-value=3.4e+02 Score=29.42 Aligned_cols=47 Identities=9% Similarity=-0.082 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCEEEEEcCCh----hHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 596 DLRKAMEKKGVELVLVNPLA----EVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 596 ~l~~~~~~~gi~l~l~~~~~----~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
++.+.+.+.+..+++||+.. .|++.|...+ ... --.|.+||-++.++
T Consensus 320 ~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~-~~~------~~~~~~~a~~~~~~ 370 (382)
T cd06207 320 LVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEIL-KKH------GGGDEELAEKKIEE 370 (382)
T ss_pred HHHHHHhcCCCEEEEECCcccccHHHHHHHHHHH-HHh------CCCCHHHHHHHHHH
Confidence 34444444445899999877 6777777665 321 12456788777754
No 116
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=2.5e+02 Score=25.26 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=33.5
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN 612 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~ 612 (659)
-..||.|.+++..-|-+-.+.+.++.+..++.|+.+.-.+
T Consensus 64 GNIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~l~ 103 (124)
T COG2450 64 GNIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAKLG 103 (124)
T ss_pred CCEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhhhc
Confidence 3679999999999888888899999999888888766443
No 117
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=22.20 E-value=3e+02 Score=27.82 Aligned_cols=71 Identities=8% Similarity=0.168 Sum_probs=46.3
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE-EEcCChhHHHHHHh
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV-LVNPLAEVLEKLQR 623 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~-l~~~~~~v~~~L~~ 623 (659)
.+-+.+++.+.+.+++.+ + -+-..+|||++.+..-+. .-|..+.+.++++|...+ +.+.+++.......
T Consensus 25 ~d~~~l~~~L~~ki~qaP------~-f~~aPvVldl~~l~~~~~---~dl~~L~~~l~~~gl~~vGv~g~~~~~~~~a~~ 94 (235)
T PRK04516 25 SDLFDLEDVLVKLGKKFQ------E-SGVVPFVLDVQEFDYPES---LDLAALVSLFSRHGMQILGLKHSNERWAAVAMK 94 (235)
T ss_pred CCHHHHHHHHHHHHHhCc------C-CCCCcEEEEchhhCCccc---ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHhh
Confidence 455667777776665431 1 123469999999974332 226778888899998776 56666666666566
Q ss_pred cC
Q 006141 624 SD 625 (659)
Q Consensus 624 ~g 625 (659)
.|
T Consensus 95 ~g 96 (235)
T PRK04516 95 YH 96 (235)
T ss_pred CC
Confidence 66
No 118
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=22.12 E-value=4.6e+02 Score=30.86 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=65.6
Q ss_pred hhhhhhHHHHHHHHHHHHhhHH--------HHHHHhCCCcchhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHh
Q 006141 90 KLFKSDIISGLTIASLAIPQGI--------SYAKLANLPPIVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLR 161 (659)
Q Consensus 90 ~~l~~Di~aGltv~~~~iPq~~--------aya~laglpp~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~ 161 (659)
....+|+=-|++.+++.+=.-. ++..+.+.-+..|+.|.+.+.+.-.+||........|....-.
T Consensus 373 G~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l~~~~~~~~i~t~i~G~l~g~~fG~~~~~~~~p~~~~~~------- 445 (660)
T COG1269 373 GIMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGLLFV------- 445 (660)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccccCCcccccc-------
Confidence 3557899889888875542211 1122222333455555444444445666533344444432211
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHhHHHHHHHHHHHHHH
Q 006141 162 QEVSPTQNPVLFLQLAFTATFFGGLVQASLGLLRLGFIIDFLSKATLIGFMAGAAIIVS 220 (659)
Q Consensus 162 ~~~~~~~~~~~~~~~a~~~t~l~Gi~~~~lg~~rlg~l~~~lp~~vi~Gf~~gigl~i~ 220 (659)
. +...+.......+.++++.|++.+.+|++ +|++-++-+.....-++....+..+
T Consensus 446 --~-~~~~~~~~~~~~m~~sl~iG~~hl~~G~~-lg~~~~~~~~~~~~a~~~~~~w~~~ 500 (660)
T COG1269 446 --Y-HGLDEGLLFSNILILSLLIGVLHLSLGLL-LGFINRVRSGDIKGAILPQLLWLLI 500 (660)
T ss_pred --c-ccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHhhhhHHHHHH
Confidence 0 11111111244678999999999999999 7887766666555555555544443
No 119
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.67 E-value=6.8e+02 Score=27.82 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=48.3
Q ss_pred eccceEEe---cchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEec--CCCccChHHHHHHHHHHHHHHHcCCEEEEEc
Q 006141 538 IEAPINFA---NTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMS--AVSAIDTSGTSFFKDLRKAMEKKGVELVLVN 612 (659)
Q Consensus 538 l~g~L~F~---na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s--~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~ 612 (659)
...|+|.. +.+.+++.++...++ +++..+++-+. ..+..|. -.+.+.+..++. .++.++.+.
T Consensus 343 ~~NPlDl~~~~~~~~~~~al~~l~~d----------p~vd~Vlv~~~~~~~~~~~~-~a~~l~~~~~~~--~~KPvv~~~ 409 (447)
T TIGR02717 343 IKNPVDVLGDATPERYAKALKTVAED----------ENVDGVVVVLTPTAMTDPEE-VAKGIIEGAKKS--NEKPVVAGF 409 (447)
T ss_pred cCCCEecCCCCCHHHHHHHHHHHHcC----------CCCCEEEEEccCCccCCHHH-HHHHHHHHHHhc--CCCcEEEEe
Confidence 35566653 334455544443322 34565554443 2222222 223444433332 155664444
Q ss_pred CC----hhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhh
Q 006141 613 PL----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSST 650 (659)
Q Consensus 613 ~~----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~ 650 (659)
.. ++.++.|+..| + .+|.+.++|++.....
T Consensus 410 ~gg~~~~~~~~~L~~~G-i-------p~f~~p~~A~~al~~~ 443 (447)
T TIGR02717 410 MGGKSVDPAKRILEENG-I-------PNYTFPERAVKALSAL 443 (447)
T ss_pred cCCccHHHHHHHHHhCC-C-------CccCCHHHHHHHHHHH
Confidence 32 44677788777 3 4899999999987654
No 120
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.03 E-value=1.5e+02 Score=31.16 Aligned_cols=61 Identities=30% Similarity=0.502 Sum_probs=42.7
Q ss_pred ccCcCC-----CCCh-hhhhhhHHHHHHHHHHHHhhHHHHHH-HhC-CCcc--hh------hhhhhhhhhhhhhccC
Q 006141 80 ILEWGP-----NYSF-KLFKSDIISGLTIASLAIPQGISYAK-LAN-LPPI--VG------LYSSFVPPLVYTVLGS 140 (659)
Q Consensus 80 ~~~w~~-----~y~~-~~l~~Di~aGltv~~~~iPq~~aya~-lag-lpp~--~G------Lyss~v~~liy~~fGs 140 (659)
-.+|=| +|-. .-+.+-++..+...++++|.+++.|. ++- .||. .- =.=+.+|+++|++||-
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl 139 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGL 139 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 446766 3443 45667777777778999999999997 454 5662 11 1127889999999975
No 121
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.81 E-value=4.1e+02 Score=22.02 Aligned_cols=55 Identities=13% Similarity=0.371 Sum_probs=37.4
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC--ChhHHHHHHhcCCCccccC
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP--LAEVLEKLQRSDDSGDFKR 632 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~~ 632 (659)
.+..+++|..- -|.+|++.+.++.+.. .+..+++... .+.......+.| ..+.+.
T Consensus 43 ~~d~iiid~~~---~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g-~~~~l~ 99 (112)
T PF00072_consen 43 PPDLIIIDLEL---PDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAG-ADDYLS 99 (112)
T ss_dssp TESEEEEESSS---SSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTT-ESEEEE
T ss_pred CceEEEEEeee---cccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 37899999653 3467888888886655 5677776653 345666666888 777653
No 122
>COG4129 Predicted membrane protein [Function unknown]
Probab=20.73 E-value=2.8e+02 Score=29.63 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=29.2
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHhhHHHhhhchhHHHHHHHHHHhhcCChhHHHHHh
Q 006141 404 NAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQIW 460 (659)
Q Consensus 404 ~~G~~T~la~i~~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~ 460 (659)
+.|.||=-+++.+++.++++-+ --.|.++.|+|.-+..+.--..+.++..|
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~------l~~~~~~~A~i~AV~~l~~t~~~s~~~~~ 58 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHL------LGLPQPAFAGISAVLCLSPTIKRSLKRAL 58 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hCCCchHHHHHHHhhcccCcchHHHHHHH
Confidence 3567777777776666665552 23566777776554444433344444444
No 123
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.71 E-value=2.7e+02 Score=29.04 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=42.2
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcC-CEEEEEcCChhHHHH-HHhcC
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKG-VELVLVNPLAEVLEK-LQRSD 625 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~g-i~l~l~~~~~~v~~~-L~~~g 625 (659)
.+++.++|| ...+.+|..+...+.++.+++.++| ..++++....+-.+. .++..
T Consensus 153 ~~P~lliLD-EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 153 HDPELLILD-EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred cCCCEEEEC-CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 356899999 7799999999999999999999988 688888655444433 44444
No 124
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.27 E-value=3.4e+02 Score=26.29 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=39.2
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVL 618 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~ 618 (659)
+++.+++| ...+.+|....+.+.++.+++.++|..++++....+..
T Consensus 146 ~p~~lllD-EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 191 (210)
T cd03269 146 DPELLILD-EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191 (210)
T ss_pred CCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 46889999 56899999999999999999988888999987776543
Done!