Query 006141
Match_columns 659
No_of_seqs 393 out of 2365
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 4.1E-29 1.4E-33 271.1 34.9 342 92-474 14-373 (429)
2 3llo_A Prestin; STAS domain, c 99.9 2.5E-25 8.5E-30 206.4 11.3 139 503-649 1-140 (143)
3 4dgh_A Sulfate permease family 99.9 3.8E-23 1.3E-27 188.5 6.5 128 514-654 2-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 8.2E-23 2.8E-27 187.5 6.3 130 511-654 2-132 (135)
5 2kln_A Probable sulphate-trans 99.8 7.3E-22 2.5E-26 179.9 7.8 125 518-651 1-125 (130)
6 3ny7_A YCHM protein, sulfate t 99.7 8.8E-19 3E-23 156.6 7.0 105 528-646 13-117 (118)
7 2ka5_A Putative anti-sigma fac 99.7 7.6E-17 2.6E-21 145.5 8.2 109 526-649 15-124 (125)
8 3t6o_A Sulfate transporter/ant 99.6 3.3E-16 1.1E-20 140.5 7.8 107 528-648 10-120 (121)
9 1th8_B Anti-sigma F factor ant 99.6 5.1E-16 1.7E-20 137.8 8.3 107 529-649 9-115 (116)
10 1h4x_A SPOIIAA, anti-sigma F f 99.6 8.7E-16 3E-20 136.7 9.4 109 529-652 8-116 (117)
11 4hyl_A Stage II sporulation pr 99.6 4.8E-16 1.6E-20 138.5 7.2 106 528-649 9-114 (117)
12 1sbo_A Putative anti-sigma fac 99.6 4.2E-15 1.5E-19 130.4 10.0 101 529-643 10-110 (110)
13 3oiz_A Antisigma-factor antago 99.5 5.3E-15 1.8E-19 127.6 2.1 85 530-628 14-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.5 1.5E-13 5.1E-18 123.3 11.2 110 531-654 11-121 (123)
15 3agd_A Salt-tolerant glutamina 96.1 0.0088 3E-07 63.1 7.5 84 531-614 324-445 (456)
16 3bl4_A Uncharacterized protein 88.4 0.33 1.1E-05 42.6 3.7 103 530-649 18-123 (124)
17 3qe7_A Uracil permease; uracil 84.5 5.8 0.0002 42.4 11.7 113 98-227 230-353 (429)
18 2q3l_A Uncharacterized protein 70.8 4.9 0.00017 35.0 5.0 107 530-648 18-126 (126)
19 3pdw_A Uncharacterized hydrola 57.7 22 0.00074 34.4 7.5 55 572-628 5-65 (266)
20 3ghf_A Septum site-determining 56.8 43 0.0015 28.7 8.3 78 533-627 17-97 (120)
21 2csu_A 457AA long hypothetical 45.2 77 0.0026 33.8 9.8 85 545-649 351-443 (457)
22 2pr7_A Haloacid dehalogenase/e 44.9 33 0.0011 28.7 5.8 58 573-631 2-61 (137)
23 3dcm_X AdoMet, uncharacterized 44.1 35 0.0012 31.9 6.0 62 581-649 24-100 (192)
24 3qgm_A P-nitrophenyl phosphata 41.2 34 0.0012 32.9 5.9 55 573-628 8-67 (268)
25 3viv_A 441AA long hypothetical 37.3 35 0.0012 32.9 5.0 66 529-609 6-71 (230)
26 3epr_A Hydrolase, haloacid deh 33.7 36 0.0012 32.8 4.6 73 572-647 4-81 (264)
27 3rst_A Signal peptide peptidas 32.6 1.1E+02 0.0039 29.3 7.9 68 531-609 3-83 (240)
28 3n07_A 3-deoxy-D-manno-octulos 31.5 25 0.00084 32.8 2.8 76 573-653 25-114 (195)
29 2yxb_A Coenzyme B12-dependent 29.7 1.6E+02 0.0055 26.3 7.9 72 572-652 69-144 (161)
30 2fp4_B Succinyl-COA ligase [GD 29.6 1.6E+02 0.0054 30.8 8.9 87 545-651 300-392 (395)
31 3nvb_A Uncharacterized protein 28.7 2E+02 0.0067 29.9 9.3 53 571-623 220-292 (387)
32 3gt7_A Sensor protein; structu 28.3 2.1E+02 0.0073 24.3 8.5 73 572-648 51-125 (154)
33 3ij5_A 3-deoxy-D-manno-octulos 28.1 1.2E+02 0.004 28.5 7.0 75 572-653 48-138 (211)
34 2ook_A Hypothetical protein; s 27.0 1.9 6.6E-05 37.7 -5.5 106 530-649 18-127 (127)
35 1zjj_A Hypothetical protein PH 26.9 64 0.0022 31.0 5.1 73 574-649 2-79 (263)
36 3ib6_A Uncharacterized protein 25.8 52 0.0018 29.9 3.9 58 573-631 3-80 (189)
37 2nu8_B SCS-beta, succinyl-COA 24.1 2.5E+02 0.0085 29.1 9.2 86 546-651 294-385 (388)
38 1bts_A BAND 3 anion transport 24.0 34 0.0012 21.0 1.4 19 124-142 6-24 (26)
39 3n1u_A Hydrolase, HAD superfam 23.1 29 0.00099 32.0 1.6 76 572-652 18-107 (191)
40 2olj_A Amino acid ABC transpor 22.3 2E+02 0.007 27.9 7.7 47 572-619 177-223 (263)
41 2oyc_A PLP phosphatase, pyrido 21.8 1.1E+02 0.0037 30.2 5.7 73 573-647 21-98 (306)
42 2pcj_A ABC transporter, lipopr 21.6 1.9E+02 0.0065 27.2 7.2 46 571-617 157-202 (224)
43 2gmw_A D,D-heptose 1,7-bisphos 21.3 64 0.0022 30.0 3.6 54 573-627 25-104 (211)
44 3mm4_A Histidine kinase homolo 21.0 2E+02 0.0067 26.3 7.1 80 572-657 119-203 (206)
45 2hx1_A Predicted sugar phospha 20.9 74 0.0025 30.9 4.2 72 573-647 14-91 (284)
46 1ji0_A ABC transporter; ATP bi 20.4 2E+02 0.0067 27.4 7.1 46 571-617 156-201 (240)
47 2i33_A Acid phosphatase; HAD s 20.0 1.1E+02 0.0039 29.6 5.3 57 570-628 56-144 (258)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=4.1e-29 Score=271.08 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=257.2
Q ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHhCCCcchhhhhhhhhhhhhhhccCCC-ccccch-hhHHHHHHHHHHhhccCCCCC
Q 006141 92 FKSDIISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYTVLGSSR-DLAVGP-VSIASLIMGSMLRQEVSPTQN 169 (659)
Q Consensus 92 l~~Di~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~~fGss~-~~~~Gp-~a~~sl~~~~~v~~~~~~~~~ 169 (659)
+++++++|++..+.+..-.++--.+-|+||..+++++.++++++++++.+| +...|+ ++.++.+.... .
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~-~-------- 84 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL-P-------- 84 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHG-G--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHH-h--------
Confidence 678999999888644433333333449999999999999999999985444 555787 45444443321 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh--hhh--hhhhhccHhHHHHHHHHHHHHHHHHhhHhHhCccccCCCCChHHHHHH
Q 006141 170 PVLFLQLAFTATFFGGLVQASLGLL--RLG--FIIDFLSKATLIGFMAGAAIIVSLQQLKSLLGITHFTNQMGLIPVMSS 245 (659)
Q Consensus 170 ~~~~~~~a~~~t~l~Gi~~~~lg~~--rlg--~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~lG~~~~~~~~~~~~~~~~ 245 (659)
..++.+.+.++++|++++++|++ |+| ++.+++|+.|++.+++.+|+.++..+++...|... . .
T Consensus 85 --~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~-~--~-------- 151 (429)
T 3qe7_A 85 --LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA-E--G-------- 151 (429)
T ss_dssp --GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB-T--T--------
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC-C--C--------
Confidence 13677899999999999999998 775 99999999999999999999999999987543211 0 0
Q ss_pred HHhhcCcchHHHHHHHHHHHHHHHHHhhhhccCCCccccccchhHHHHHHHHHHHHHhhccCCCceeeeccc-cCCCCCC
Q 006141 246 VFHNTKEWSWQTILMGFCFLVFLLLTRHVGTKRPKLFWVSAGAPLVSVILSTLLVFAFKAQHHGISVIGKLQ-EGLNPPS 324 (659)
Q Consensus 246 ~~~~~~~~~~~~~~ig~~~l~~l~~~~~~~~~~~~~~~i~~~~~li~vi~~t~i~~~~~~~~~~v~~vg~ip-~gl~~p~ 324 (659)
+..++.++.+++.++++++++.++.|++.| .++.|+++++++++++.++..+ .+.+++.| .++|.+.
T Consensus 152 -----~~~~~~~~~la~~tl~iii~~~~~~kg~~~-----~~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~~ 219 (429)
T 3qe7_A 152 -----QTPDSKTIIISITTLAVTVLGSVLFRGFLA-----IIPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTLY 219 (429)
T ss_dssp -----BCCCHHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCCC
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHhcccch-----hhHHHHHHHHHHHHHHHhcCCC--cccccccccccccCCC
Confidence 124567789999999988887765555443 3378999999999999987532 22233322 3455554
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhHhHhhhhccCcccccccchhhH
Q 006141 325 WNMLKFHGSHLGLVMKTGLITGIISLTEGIAVGRTFAALKNY----QVDGNKEMIAIGVMNIVGSSTSCYITTGAFSRSA 400 (659)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~iaiv~~~e~~~~~~~~a~~~~~----~~d~n~El~a~G~~Niv~s~fg~~p~~~s~srS~ 400 (659)
.|+ |++.. +...+.++++.++|++...++.+++.|+ +.+.|||+.++|++|+++++||++|.|++..+++
T Consensus 220 ~P~--f~~~~----i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g 293 (429)
T 3qe7_A 220 TPR--FEWFA----ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIG 293 (429)
T ss_dssp CCC--CCHHH----HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH
T ss_pred CCc--ccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHH
Confidence 554 44433 3344567888999999888888777664 4577999999999999999999999999777777
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHH--hhHHHhhhchhHHHHHHHHHHhhcCChhHHHHH--hcCCc---hhHHHHHHH
Q 006141 401 VNHNAGAKTAVSNVVMSVTVMVTLLF--LMPLFQYTPNVVLGAIIVTAVVGLIDVPAAHQI--WKIDK---FDFLVMLCA 473 (659)
Q Consensus 401 ~~~~~G~~T~la~i~~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~~~~~---~d~~v~~~t 473 (659)
+...+|++||++.+++|++++++.++ ++++++.+|.++++|+.+ +.++++....++.+ .|++. .+..+..++
T Consensus 294 ~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l-~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~ 372 (429)
T 3qe7_A 294 VMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVI 372 (429)
T ss_dssp HHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Confidence 88899999999999999988877653 778999999999999766 59999988888888 77774 355554443
Q ss_pred h
Q 006141 474 F 474 (659)
Q Consensus 474 ~ 474 (659)
+
T Consensus 373 l 373 (429)
T 3qe7_A 373 L 373 (429)
T ss_dssp H
T ss_pred H
Confidence 3
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.92 E-value=2.5e-25 Score=206.42 Aligned_cols=139 Identities=25% Similarity=0.425 Sum_probs=123.7
Q ss_pred CCceeeecccCCCcccccccccccccccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecC
Q 006141 503 RPKTVMLGNMPGSDIYRDLHHYNEAIRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSA 582 (659)
Q Consensus 503 ~p~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~ 582 (659)
||++.++|++|+++.||++++|+++++.+++.++|++|+|+|+|+++|++++.+.+++.. .+..+.+||||++
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls~ 73 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNG-------SENIHTVILDFTQ 73 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC------------------CCSEEEEECTT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccCC-------CCCceEEEEECCC
Confidence 799999999999999999999999999999999999999999999999999988765310 0247899999999
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccC-CCccccCHHHHHHHHhh
Q 006141 583 VSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKR-PDSLYLTVGEAVASLSS 649 (659)
Q Consensus 583 V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~-~~~if~s~~~Av~~~~~ 649 (659)
|++||+||+++|.+++++++++|++++++++++++++.|+++| +.+.++ ++++|+|++||+++++.
T Consensus 74 v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g-l~~~~~~~~~if~s~~~Al~~~~~ 140 (143)
T 3llo_A 74 VNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNR-FFENPALKELLFHSIHDAVLGSQV 140 (143)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTT-TTSSGGGGGGEESSHHHHHHHTSS
T ss_pred CccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-CeeccCccceEECcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 999887 77899999999999875
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.87 E-value=3.8e-23 Score=188.45 Aligned_cols=128 Identities=15% Similarity=0.289 Sum_probs=119.0
Q ss_pred CCcccccccccccccccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHH
Q 006141 514 GSDIYRDLHHYNEAIRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSF 593 (659)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~ 593 (659)
+|+.|+++++|++.+..+++.+++++|+|+|+|+++|++++.+. . +..+.+||||++|++||+||+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDssgl~~ 69 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGSI-Q-----------ETPQILILRLKWVPFMDITGIQT 69 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHHS-S-----------SCCSEEEEECTTCCCCCHHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHHh-c-----------cCCCEEEEECCCCCcccHHHHHH
Confidence 67899999999999999999999999999999999999987642 1 23689999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhhhccC
Q 006141 594 FKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTIKAP 654 (659)
Q Consensus 594 L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~~~~ 654 (659)
|.++.++++++|++++++++++++++.|+++| +.+.++++++|+|++||+++|++++..+
T Consensus 70 L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g-l~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 70 LEEMIQSFHKRGIKVLISGANSRVSQKLVKAG-IVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHHTTTCEEEEECCCHHHHHHHHHTT-HHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC-ChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999 9999998999999999999999887654
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.87 E-value=8.2e-23 Score=187.49 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=111.9
Q ss_pred ccCCCcccccccccccccccC-cEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChH
Q 006141 511 NMPGSDIYRDLHHYNEAIRIP-GFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTS 589 (659)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~-~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDss 589 (659)
++|+++.|+++++| ++++.| ++.++|++|+|+|+|+++|++++.+. . ++.+.+|+||++|++||+|
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-~-----------~~~~~vvlDls~v~~iDss 68 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-E-----------ETPKVFILRMRRVPVIDAT 68 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-S-----------SCCSEEEEECTTCSCBCHH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-c-----------CCCcEEEEEcCCCCccCHH
Confidence 68999999999999 677777 99999999999999999999987642 1 2478999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhhhccC
Q 006141 590 GTSFFKDLRKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTIKAP 654 (659)
Q Consensus 590 gi~~L~~l~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~~~~ 654 (659)
|+++|.++.++++++|++++++++++++++.|+++| +.+.++++++|+|++||++++++.+...
T Consensus 69 gl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g-l~~~~~~~~i~~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 69 GMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFG-FIEALGEERVFDHIDKALAYAKLLVETA 132 (135)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHT-HHHHHCGGGBCSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC-ChhhcCccceeCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999 9999998899999999999999877653
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.85 E-value=7.3e-22 Score=179.93 Aligned_cols=125 Identities=20% Similarity=0.412 Sum_probs=114.7
Q ss_pred cccccccccccccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHH
Q 006141 518 YRDLHHYNEAIRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDL 597 (659)
Q Consensus 518 ~~~~~~~~~~~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l 597 (659)
|+++++||++++.+++.+++++|+|+|+|+++|++++.+.+++. +++.+.|||||++|++||+||+++|.++
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~~ 72 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQL 72 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHHH
Confidence 78899999999999999999999999999999999998765431 0147899999999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhhh
Q 006141 598 RKAMEKKGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTI 651 (659)
Q Consensus 598 ~~~~~~~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~ 651 (659)
.++++++|++++++++++++++.|+++| +.+.+|++++|+|++||+++++.+.
T Consensus 73 ~~~~~~~g~~l~l~~~~~~v~~~l~~~g-l~~~~~~~~i~~t~~~Al~~~~~~~ 125 (130)
T 2kln_A 73 RTELLRRGIVFAMARVKQDLRESLRAAS-LLDKIGEDHIFMTLPTAVQAFRRRH 125 (130)
T ss_dssp HHHHHTTTEEEEEECCSSHHHHHHHHCT-THHHHCTTEEESCHHHHHHHHTTC-
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHcC-ChhhcCcceeECCHHHHHHHHHhhc
Confidence 9999999999999999999999999999 9999999999999999999998654
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.75 E-value=8.8e-19 Score=156.61 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=96.6
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
+..+++.++|++|+|+|+|+++|++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |++
T Consensus 13 ~~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 13 DVPDDVLVLRVIGPLFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCCTTEEEEEEESCBCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCCEEEEEEeceeEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 3457899999999999999999999886543 136899999999999999999999999999999 999
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHH
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~ 646 (659)
++++++++++++.|+++| +.+.++++++|+|++||++.
T Consensus 80 l~l~~~~~~v~~~l~~~g-l~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAG-IQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEEECCCHHHHHHHHHTT-CCCBTTTEEEESSHHHHTTT
T ss_pred EEEecCCHHHHHHHHHcC-ChhhcChhhhcCCHHHHHhh
Confidence 999999999999999999 99999999999999999863
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.67 E-value=7.6e-17 Score=145.55 Aligned_cols=109 Identities=18% Similarity=0.299 Sum_probs=98.7
Q ss_pred cccccCcEEEEEeccceEEecchHHHHHHHH-HHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHc
Q 006141 526 EAIRIPGFLILSIEAPINFANTTYLNERILR-WIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKK 604 (659)
Q Consensus 526 ~~~~~~~i~I~rl~g~L~F~na~~~~~~l~~-~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~ 604 (659)
+.+..+++.+++++|+|+|+|++.|++.+.+ .+++ ..+.+++||++|++|||||+++|.++.++++++
T Consensus 15 ~~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~-----------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~ 83 (125)
T 2ka5_A 15 PYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK-----------GYNKIFLVLSDVESIDSFSLGVIVNILKSISSS 83 (125)
T ss_dssp CEEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT-----------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred cceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC-----------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHc
Confidence 3456789999999999999999999999887 5432 267899999999999999999999999999999
Q ss_pred CCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 605 GVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 605 gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
|+++.++|+++++++.|+.+| +.+.+ .+|+|.+||++.++.
T Consensus 84 g~~l~l~~~~~~v~~~l~~~g-l~~~~---~i~~s~~~Al~~~~~ 124 (125)
T 2ka5_A 84 GGFFALVSPNEKVERVLSLTN-LDRIV---KIYDTISEAMEEVRR 124 (125)
T ss_dssp TCEEEEECCCHHHHHHHHHTT-STTTS---EEESSHHHHHTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHcC-CCceE---EecCCHHHHHHHhhc
Confidence 999999999999999999999 98888 599999999987653
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.63 E-value=3.3e-16 Score=140.51 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=97.0
Q ss_pred cccCcEEEEEeccce---EEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHH-
Q 006141 528 IRIPGFLILSIEAPI---NFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEK- 603 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L---~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~- 603 (659)
++.+++.+++++|++ +|.|++.|++++.+.+.+ ...+.+|+||++|+||||+|+++|.++++++++
T Consensus 10 ~~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 10 THEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp EEETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred EEECCEEEEEEccccccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 456899999999998 899999999998766532 237899999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 604 KGVELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 604 ~gi~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
+|+++.++++++++++.|+.+| +.+.+ .+|+|++||++.++
T Consensus 80 ~g~~l~l~~~~~~v~~~l~~~g-l~~~~---~i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 80 QQGVFALCSVSPYCVEVLQVTH-IDEVW---PRYSTKQEALLAMA 120 (121)
T ss_dssp TTCEEEEESCCHHHHHHHTTCS-GGGGS---CEESSHHHHHHHTC
T ss_pred cCCEEEEEeCCHHHHHHHHHhC-cccee---cccCCHHHHHHHhc
Confidence 9999999999999999999999 99988 49999999998864
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.62 E-value=5.1e-16 Score=137.77 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=97.9
Q ss_pred ccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEE
Q 006141 529 RIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 529 ~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l 608 (659)
+.+++.+++++|+++|.|++.+++.+.+.++++ +.+.+++||++|++||++|+++|.+++++++++|+++
T Consensus 9 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 78 (116)
T 1th8_B 9 VKQDVLIVRLSGELDHHTAEELREQVTDVLENR----------AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQM 78 (116)
T ss_dssp EETTEEEEEEEEEESHHHHHHHHHHHHHHHHSS----------CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCE
T ss_pred EECCEEEEEEeeeeccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeE
Confidence 457899999999999999999999998776431 2678999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 609 VLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 609 ~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
.++|+++++++.|+.+| +.+.+ ++|+|.+||++++++
T Consensus 79 ~l~~~~~~v~~~l~~~g-l~~~~---~i~~~~~~Al~~~~~ 115 (116)
T 1th8_B 79 VVCAVSPAVKRLFDMSG-LFKII---RVEADEQFALQALGV 115 (116)
T ss_dssp EEESCCHHHHHHHHHHT-GGGTS---EEESSHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhC-CceeE---EEeCCHHHHHHhccC
Confidence 99999999999999999 98888 699999999998864
No 10
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.62 E-value=8.7e-16 Score=136.67 Aligned_cols=109 Identities=16% Similarity=0.220 Sum_probs=96.8
Q ss_pred ccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEE
Q 006141 529 RIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 529 ~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l 608 (659)
+.+++.+++++|+++|.|++.|++.+.+.+.+. ..+.+++||++|++|||+|+++|.+++++++++|+++
T Consensus 8 ~~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 77 (117)
T 1h4x_A 8 VTRETVVIRLFGELDHHAVEQIRAKISTAIFQG----------AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRT 77 (117)
T ss_dssp EETTEEEEEEEEEECHHHHHHHHHHHHHHHHHT----------SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEE
T ss_pred eeCCEEEEEEEeEEchhhHHHHHHHHHHHHhcC----------CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999998876431 2678999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhhhhc
Q 006141 609 VLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSSTIK 652 (659)
Q Consensus 609 ~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~~~~ 652 (659)
.++++++++++.|+.+| +.+.+ +|+|.+||++.+++..+
T Consensus 78 ~l~~~~~~v~~~l~~~g-l~~~~----i~~~~~~Al~~~~~~~~ 116 (117)
T 1h4x_A 78 ILLNPSPTMRKVFQFSG-LGPWM----MDATEEEAIDRVRGIVN 116 (117)
T ss_dssp EEESCCHHHHHHHHHTT-CGGGE----ECSCHHHHHHHTC----
T ss_pred EEEeCCHHHHHHHHHhC-CceEE----EeCCHHHHHHHHHHhhc
Confidence 99999999999999999 98877 89999999998876543
No 11
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.61 E-value=4.8e-16 Score=138.47 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=96.4
Q ss_pred cccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 528 IRIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 528 ~~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
+..+++.+++++|+++|.|++.+++++.+.++++ . .+++||++|+||||+|+++|.+++++++++|++
T Consensus 9 ~~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~~-----------~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 4hyl_A 9 RTEQGIDIITLHGHLDTRSSPAVQAAVLPRVTAK-----------G-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA 76 (117)
T ss_dssp EEETTEEEEEEEEEECSSSHHHHHHHHGGGCCTT-----------C-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred EEECCEEEEEEEeEEcchhHHHHHHHHHHHHccC-----------C-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 3457899999999999999999999887764322 3 899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
+.++++++++++.|+.+| +.+.+ .+|+|++||++.++.
T Consensus 77 l~l~~~~~~v~~~l~~~g-l~~~~---~i~~~~~~Al~~~~~ 114 (117)
T 4hyl_A 77 LVLVGVSEEIRDTMEITG-FWNFF---TACASMDEALRILGS 114 (117)
T ss_dssp EEEECCCHHHHHHHHHHT-CGGGC---EEESCHHHHHHHHCC
T ss_pred EEEEeCCHHHHHHHHHhC-cccee---eecCCHHHHHHHhcc
Confidence 999999999999999999 99988 599999999998764
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.58 E-value=4.2e-15 Score=130.40 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=92.3
Q ss_pred ccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEE
Q 006141 529 RIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 529 ~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l 608 (659)
+.+++.+++++|+++|.|++.+++++.+...+. ..+.+++||++|++||++|+++|.+++++++++|+++
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~----------~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 79 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTT----------SKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEF 79 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHC----------SCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEE
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhcC----------CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999998876542 2478999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHhcCCCccccCCCccccCHHHH
Q 006141 609 VLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEA 643 (659)
Q Consensus 609 ~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~A 643 (659)
.++++++++++.|+.+| +.+.++ +|+|++||
T Consensus 80 ~l~~~~~~v~~~l~~~g-l~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 80 ILSSLKESISRILKLTH-LDKIFK---ITDTVEEA 110 (110)
T ss_dssp EEESCCHHHHHHHHHTT-CGGGSC---BCSSGGGC
T ss_pred EEEeCCHHHHHHHHHhC-ccceee---ccCCcccC
Confidence 99999999999999999 999884 99999886
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.48 E-value=5.3e-15 Score=127.62 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=72.6
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEE
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELV 609 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~ 609 (659)
.+++.+++++|+|||+|+++|++++.. . ++.+.+|+||++|+|||+||+++|.++.++++++|+++.
T Consensus 14 ~g~~~v~~l~G~L~f~~a~~~~~~l~~----~---------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (99)
T 3oiz_A 14 DGRERIYRVEGQLFYASVEDFMAAFDF----R---------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVR 80 (99)
T ss_dssp TSSEEEEEEEEEECGGGHHHHHHTCCT----T---------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEEeeEEehhhHHHHHHHHhh----c---------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 346999999999999999999998752 1 247899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHhcCCCc
Q 006141 610 LVNPLAEVLEKLQRSDDSG 628 (659)
Q Consensus 610 l~~~~~~v~~~L~~~g~~~ 628 (659)
++++++++++.|+++| +.
T Consensus 81 l~~~~~~v~~~l~~~g-~~ 98 (99)
T 3oiz_A 81 IVGMNEASETMVDRLA-IH 98 (99)
T ss_dssp EESHHHHHTTCC-------
T ss_pred EEcCCHHHHHHHHHhc-CC
Confidence 9999999999999999 64
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.48 E-value=1.5e-13 Score=123.35 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=97.9
Q ss_pred CcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEE
Q 006141 531 PGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVL 610 (659)
Q Consensus 531 ~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l 610 (659)
.++.++++.|++|+.+++.+++++.+.+.+. +.+++|+|+++|+++||+|++.|.++++.++..|.++.+
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~~----------~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l 80 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITGV----------AGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVL 80 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTSS----------CCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHhc----------CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4699999999999999999999998876532 478999999999999999999999999999999999999
Q ss_pred EcCChhHHHHHHhcCCCc-cccCCCccccCHHHHHHHHhhhhccC
Q 006141 611 VNPLAEVLEKLQRSDDSG-DFKRPDSLYLTVGEAVASLSSTIKAP 654 (659)
Q Consensus 611 ~~~~~~v~~~L~~~g~~~-~~~~~~~if~s~~~Av~~~~~~~~~~ 654 (659)
+|.+|++.+.|...| +. +.+ .+|.|.++|++.++...|-.
T Consensus 81 ~Gi~p~va~~l~~~G-~~l~~i---~~~~~l~~Al~~l~~~~~~~ 121 (123)
T 3zxn_A 81 TGIKPAVAITLTEMG-LDLRGM---ATALNLQKGLDKLKNLARME 121 (123)
T ss_dssp ECCCHHHHHHHHHTT-CCSTTS---EEESSHHHHHHHHHHHHTC-
T ss_pred EcCCHHHHHHHHHhC-CCccce---EEECCHHHHHHHHHHhhhhh
Confidence 999999999999999 75 555 69999999999988766543
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.13 E-value=0.0088 Score=63.07 Aligned_cols=84 Identities=17% Similarity=0.302 Sum_probs=67.2
Q ss_pred CcEEEEEeccceEEecchHHHHHHHHHH-------------------HHHHhH-------------------hhhccCCC
Q 006141 531 PGFLILSIEAPINFANTTYLNERILRWI-------------------EEYEAE-------------------ENLNKQSS 572 (659)
Q Consensus 531 ~~i~I~rl~g~L~F~na~~~~~~l~~~i-------------------~~~~~~-------------------~~~~~~~~ 572 (659)
+++.+++++|.+.|+.++.+.+++.+.. +...++ ........
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 4799999999999999999988887651 000000 00112456
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL 614 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~ 614 (659)
.+.||||+++|+.+|-.|..++.+..++++..|.+++++.+.
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 789999999999999999999999999999999999999876
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=88.39 E-value=0.33 Score=42.58 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=69.0
Q ss_pred cCcEEEEEecc--ceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCE
Q 006141 530 IPGFLILSIEA--PINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVE 607 (659)
Q Consensus 530 ~~~i~I~rl~g--~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~ 607 (659)
.+||..+++.+ +++-..+..+-.++.+..+ .+...+++|++....++..+-+.+.+-. .=-.
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~-----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~a 81 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCG-----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QASR 81 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHT-----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEEE
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhC-----------CCceEEEEEcccccCCCHHHHHHHhCcc-----ceeE
Confidence 47999999999 6777777777777766322 2368899999999889988877776621 1234
Q ss_pred EEEEcCChhHHHHHHh-cCCCccccCCCccccCHHHHHHHHhh
Q 006141 608 LVLVNPLAEVLEKLQR-SDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~-~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
+.+.+.++-.+-+-.. .+ +...-.+.++|.|.+||++|.++
T Consensus 82 ~Al~g~s~~~r~ia~~~l~-~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 82 IALLGSSPVDRVLANFFLG-INAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEEECSSGGGHHHHHHHHH-HHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEEcCCHHHHHHHHHHHH-hcCCCCCceeeCCHHHHHHHHHh
Confidence 6677766544332111 11 22222334799999999999864
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=84.51 E-value=5.8 Score=42.38 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhHH----HHHHHhCCCc------chhhhhhhhhhhhhhhccCCCccccchhhHHHHHHHHHHhhccCCC
Q 006141 98 SGLTIASLAIPQGI----SYAKLANLPP------IVGLYSSFVPPLVYTVLGSSRDLAVGPVSIASLIMGSMLRQEVSPT 167 (659)
Q Consensus 98 aGltv~~~~iPq~~----aya~laglpp------~~GLyss~v~~liy~~fGss~~~~~Gp~a~~sl~~~~~v~~~~~~~ 167 (659)
.=++++++..-+.+ +.+..+|-+. .-++.+-.++.++.++||+++....+. ..-+++. .+..
T Consensus 230 ~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~e---n~g~i~~--tg~~--- 301 (429)
T 3qe7_A 230 TILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGE---NIGVMAI--TRVY--- 301 (429)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHH---HHHHHHH--HTBC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHH---hHHHHHh--cCCc---
Confidence 33555555554544 3444566432 378999999999999999876555332 1111111 1110
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhccHhHHHHHHHHHHHHHHHHhhHhH
Q 006141 168 QNPVLFLQLAFTATFFGGLVQASLGLL-RLGFIIDFLSKATLIGFMAGAAIIVSLQQLKSL 227 (659)
Q Consensus 168 ~~~~~~~~~a~~~t~l~Gi~~~~lg~~-rlg~l~~~lp~~vi~Gf~~gigl~i~~~ql~~~ 227 (659)
.. .+...+|++.+++|++ +++.+...+|.||+.|.+...==.+..+.++.+
T Consensus 302 ----sr-----~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l 353 (429)
T 3qe7_A 302 ----ST-----WVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 (429)
T ss_dssp ----CH-----HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ch-----HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1346788999999987 588999999999999955433333444444433
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=70.79 E-value=4.9 Score=35.00 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=67.6
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHH--HHHHHcCCE
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLR--KAMEKKGVE 607 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~--~~~~~~gi~ 607 (659)
.+++..+++.|.++-..-+.+...+.+.+++. . .+.-.+.+|++.....+..++ ..++. ....++=-+
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~-------~-~~~i~ll~~~~~f~G~~~~a~--~~d~k~~~~h~~~~~R 87 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGI-------K-TPEIVALIDITELDGLSLHAA--WDDLKLGLKHGKEFKR 87 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTC-------C-SSCEEEEEEEEEEEEECHHHH--HHHHHHHHHHGGGEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhC-------C-CceEEEEEEecCCCCCCHHHH--HHHHHhhhhHHhcCCE
Confidence 35689999999997766555555555544432 1 111457789988887775443 23322 222233468
Q ss_pred EEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 608 LVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 608 l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
+.+++-+.=++...+..+ ..-. ++.+.|.+.++|.+|.+
T Consensus 88 iAvV~d~~W~~~~~~~~~-~~~~-~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 88 VAIIGQGELQEWATRVAN-WFTP-GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp EEEECCSHHHHHHHHHHH-HHCS-SEEEEESCHHHHHHHHC
T ss_pred EEEEcChHHHHHHHHHHh-hccC-CceeccCCHHHHHHHhC
Confidence 889988877766666666 4311 23478899999999863
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=57.71 E-value=22 Score=34.41 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=41.2
Q ss_pred CceEEEEEecCCCccCh-HHHHHHHHHHHHHHHcCCEEEEE-----cCChhHHHHHHhcCCCc
Q 006141 572 SLRFVILEMSAVSAIDT-SGTSFFKDLRKAMEKKGVELVLV-----NPLAEVLEKLQRSDDSG 628 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDs-sgi~~L~~l~~~~~~~gi~l~l~-----~~~~~v~~~L~~~g~~~ 628 (659)
+.|.+++|+.++-. |+ ..+.--.+..++++++|++++++ .....+.+.++..| +.
T Consensus 5 ~~kli~~DlDGTLl-~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg-~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMY-NGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFD-IP 65 (266)
T ss_dssp CCSEEEEECSSSTT-CHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTT-CC
T ss_pred cCCEEEEeCcCceE-eCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcC-CC
Confidence 37899999999854 54 23334567778889999999999 34466888888888 64
No 20
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=56.76 E-value=43 Score=28.69 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=53.8
Q ss_pred EEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCC-ccChHHHHHHHHHHHHHHHcCCEEE-E
Q 006141 533 FLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVS-AIDTSGTSFFKDLRKAMEKKGVELV-L 610 (659)
Q Consensus 533 i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~-~IDssgi~~L~~l~~~~~~~gi~l~-l 610 (659)
..++++.. .+-+.+++++.+.+++.++-- +-..||||++.+. .+| |.++.+.++++|..++ +
T Consensus 17 l~vl~l~~----~d~~~l~~~L~~ki~~aP~FF------~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~vGV 80 (120)
T 3ghf_A 17 LSVVHLHE----AEPEVIRQALEDKIAQAPAFL------KHAPVVINVSGLESPVN------WPELHKIVTSTGLRIIGV 80 (120)
T ss_dssp CEEEEEES----CCHHHHHHHHHHHHHHSHHHH------TTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEEEE
T ss_pred EEEEEeCC----CCHHHHHHHHHHHHHhChHhh------CCCcEEEEccccCChHH------HHHHHHHHHHcCCEEEEE
Confidence 45555543 455677888877776543211 2457999999886 334 6777888999998886 6
Q ss_pred EcCChh-HHHHHHhcCCC
Q 006141 611 VNPLAE-VLEKLQRSDDS 627 (659)
Q Consensus 611 ~~~~~~-v~~~L~~~g~~ 627 (659)
.+++++ .++..+..| +
T Consensus 81 ~g~~~~~~~~~a~~~G-L 97 (120)
T 3ghf_A 81 SGCKDASLKVEIDRMG-L 97 (120)
T ss_dssp ESCCCHHHHHHHHHHT-C
T ss_pred eCCCcHHHHHHHHHCC-C
Confidence 666655 888888888 6
No 21
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=45.19 E-value=77 Score=33.83 Aligned_cols=85 Identities=7% Similarity=0.028 Sum_probs=52.6
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCc--cC--hHHHHHHHHHHHHHHHcCCEEEEEcC----Chh
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSA--ID--TSGTSFFKDLRKAMEKKGVELVLVNP----LAE 616 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~--ID--ssgi~~L~~l~~~~~~~gi~l~l~~~----~~~ 616 (659)
++.+.+++.++...++ +++..+++++..-.+ ++ ..+ +.+.+..++.+ .+..++.+.. .++
T Consensus 351 a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~ 418 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEK 418 (457)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHH
Confidence 4566777777666543 357888888753322 32 222 33444444443 5566665432 355
Q ss_pred HHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 617 VLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 617 v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
.++.|+..| + .+|++.++|++.+..
T Consensus 419 ~~~~L~~~G-i-------p~~~spe~Av~al~~ 443 (457)
T 2csu_A 419 AKELLEKNG-I-------PTYERPEDVASAAYA 443 (457)
T ss_dssp HHHHHHTTT-C-------CEESSHHHHHHHHHH
T ss_pred HHHHHHhCC-C-------CccCCHHHHHHHHHH
Confidence 788888888 4 589999999998654
No 22
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=44.87 E-value=33 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=39.2
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC--ChhHHHHHHhcCCCcccc
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP--LAEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~--~~~v~~~L~~~g~~~~~~ 631 (659)
.|.+++|+.++-.=+..-..-..++.++++++|+++.++.- ...+.+.++..| +.+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~-l~~~f 61 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELE-TNGVV 61 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHH-HTTSS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCC-hHhhc
Confidence 47899999886633333445577888899999999987643 344556666666 54433
No 23
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=44.11 E-value=35 Score=31.93 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred cCCCccChHHHHHHHHHHHHHHHcC-CEEEEEcCChhHHHHHHh--------cCCC------ccccCCCccccCHHHHHH
Q 006141 581 SAVSAIDTSGTSFFKDLRKAMEKKG-VELVLVNPLAEVLEKLQR--------SDDS------GDFKRPDSLYLTVGEAVA 645 (659)
Q Consensus 581 s~V~~IDssgi~~L~~l~~~~~~~g-i~l~l~~~~~~v~~~L~~--------~g~~------~~~~~~~~if~s~~~Av~ 645 (659)
+.|+.+| +..+.+.++.-| .++++++|....++.-++ .| - .|.+..-.+++|++||++
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~G-a~~np~r~d~L~~a~vv~sL~eAl~ 96 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFG-SRYNPSRAESLKLVKLKSYLEDVLE 96 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGG-GGTCSSSHHHHTTEEEESSHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccC-cccCcCHHHHhccCeEECCHHHHHH
Confidence 4566666 456678888888 689999998755433222 33 2 344555579999999999
Q ss_pred HHhh
Q 006141 646 SLSS 649 (659)
Q Consensus 646 ~~~~ 649 (659)
.|++
T Consensus 97 ~~~~ 100 (192)
T 3dcm_X 97 DIES 100 (192)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
No 24
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=41.21 E-value=34 Score=32.91 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=40.0
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC-----ChhHHHHHHhcCCCc
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP-----LAEVLEKLQRSDDSG 628 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~ 628 (659)
.|.+++|+.++-.=+-.-+.--.+..++++++|++++++.- ...+.+.++..| +.
T Consensus 8 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg-~~ 67 (268)
T 3qgm_A 8 KKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFG-LE 67 (268)
T ss_dssp CSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTT-CC
T ss_pred CCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCC-CC
Confidence 78999999998543332222346677888899999999833 456788888888 64
No 25
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=37.33 E-value=35 Score=32.92 Aligned_cols=66 Identities=8% Similarity=0.124 Sum_probs=43.2
Q ss_pred ccCcEEEEEeccceEEecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEE
Q 006141 529 RIPGFLILSIEAPINFANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVEL 608 (659)
Q Consensus 529 ~~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l 608 (659)
..+.+.++.++|+++-..++++.+.+.+..+ .+.+.|+|....-.. | +....++++.+++..+.+
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~-----------~~~~~Ivl~inspGG-~---v~~~~~i~~~i~~~~~PV 70 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPGG-R---ADAMMNIVQRIQQSKIPV 70 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHH-----------TTCSEEEEEEEBSCE-E---HHHHHHHHHHHHTCSSCE
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhc-----------CCCCEEEEEEeCCCc-C---HHHHHHHHHHHHhCCCCE
Confidence 4467999999999998888888888766532 137788886542222 2 233455666666655554
Q ss_pred E
Q 006141 609 V 609 (659)
Q Consensus 609 ~ 609 (659)
+
T Consensus 71 i 71 (230)
T 3viv_A 71 I 71 (230)
T ss_dssp E
T ss_pred E
Confidence 4
No 26
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=33.73 E-value=36 Score=32.83 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc---C--ChhHHHHHHhcCCCccccCCCccccCHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN---P--LAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~---~--~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~ 646 (659)
..|.+++|+.++-.-+-..+.--.+..++++++|++++++. . ...+.+.++..| +... .+.++.+...+.+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg-~~~~--~~~ii~~~~~~~~~ 80 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFN-VETP--LETIYTATMATVDY 80 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTT-CCCC--GGGEEEHHHHHHHH
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCC-CCCC--hhheecHHHHHHHH
Confidence 37899999999854333333444566778888999999997 2 356778888888 6421 22344444444444
Q ss_pred H
Q 006141 647 L 647 (659)
Q Consensus 647 ~ 647 (659)
.
T Consensus 81 l 81 (264)
T 3epr_A 81 M 81 (264)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=32.64 E-value=1.1e+02 Score=29.29 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=44.6
Q ss_pred CcEEEEEeccceEEe------------cchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHH
Q 006141 531 PGFLILSIEAPINFA------------NTTYLNERILRWIEEYEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLR 598 (659)
Q Consensus 531 ~~i~I~rl~g~L~F~------------na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~ 598 (659)
++|.+++++|++.=. +.+.+.+.+++..+ ++++|.|+|+... ..-|..+.+.+.+..
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l 71 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKKL 71 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHHH
Confidence 467888888887543 23455555544422 2468999998864 456777777777777
Q ss_pred HHHHH-cCCEEE
Q 006141 599 KAMEK-KGVELV 609 (659)
Q Consensus 599 ~~~~~-~gi~l~ 609 (659)
+++++ .++.++
T Consensus 72 ~~~~~~~~kPVi 83 (240)
T 3rst_A 72 EEIKKETKKPIY 83 (240)
T ss_dssp HHHHHHHCCCEE
T ss_pred HHHHHhCCCeEE
Confidence 77776 565554
No 28
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=31.49 E-value=25 Score=32.81 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=50.6
Q ss_pred ceEEEEEecCCC-----ccChHHHHHHHHH-------HHHHHHcCCEEEEEc--CChhHHHHHHhcCCCccccCCCcccc
Q 006141 573 LRFVILEMSAVS-----AIDTSGTSFFKDL-------RKAMEKKGVELVLVN--PLAEVLEKLQRSDDSGDFKRPDSLYL 638 (659)
Q Consensus 573 ~~~vILD~s~V~-----~IDssgi~~L~~l-------~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~~~~~if~ 638 (659)
.+.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++. ....+.+.++..| +.+.+.. ..
T Consensus 25 ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lg-i~~~~~~---~k 99 (195)
T 3n07_A 25 IKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALG-ISLIYQG---QD 99 (195)
T ss_dssp CCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTT-CCEEECS---CS
T ss_pred CCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcC-CcEEeeC---CC
Confidence 789999998862 222222 223333 688899999999885 4566888999999 8765532 24
Q ss_pred CHHHHHHHHhhhhcc
Q 006141 639 TVGEAVASLSSTIKA 653 (659)
Q Consensus 639 s~~~Av~~~~~~~~~ 653 (659)
+-.++++.+.+++.-
T Consensus 100 ~k~~~~~~~~~~~~~ 114 (195)
T 3n07_A 100 DKVQAYYDICQKLAI 114 (195)
T ss_dssp SHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHhCC
Confidence 556777766655543
No 29
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.70 E-value=1.6e+02 Score=26.27 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcC---CEEEEEcCChh-HHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKG---VELVLVNPLAE-VLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~g---i~l~l~~~~~~-v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
+.+.|.+-+... +....+.++.+.+++.| +.+++-|.... -.+.++..| ....++++ .+.+++++++
T Consensus 69 ~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G-~d~v~~~~---~~~~~~~~~~ 139 (161)
T 2yxb_A 69 DVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLG-IREIFLPG---TSLGEIIEKV 139 (161)
T ss_dssp TCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTT-CCEEECTT---CCHHHHHHHH
T ss_pred CCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCC-CcEEECCC---CCHHHHHHHH
Confidence 367777765544 45667788888887764 77888776443 344578888 65434322 1457788887
Q ss_pred hhhhc
Q 006141 648 SSTIK 652 (659)
Q Consensus 648 ~~~~~ 652 (659)
++.++
T Consensus 140 ~~~~~ 144 (161)
T 2yxb_A 140 RKLAE 144 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 30
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=29.59 E-value=1.6e+02 Score=30.76 Aligned_cols=87 Identities=7% Similarity=0.109 Sum_probs=55.5
Q ss_pred ecchHHHHHHHHHHHHHHhHhhhccCCCceEEEEEe-cCCCccChHHHHHHHHHHHHHHHcCCE--EEEEcCChh-HHHH
Q 006141 545 ANTTYLNERILRWIEEYEAEENLNKQSSLRFVILEM-SAVSAIDTSGTSFFKDLRKAMEKKGVE--LVLVNPLAE-VLEK 620 (659)
Q Consensus 545 ~na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD~-s~V~~IDssgi~~L~~l~~~~~~~gi~--l~l~~~~~~-v~~~ 620 (659)
++.+++++.++-..++ ++++.+++.. .++...|..+ +.+.+..++++ .++. +.+.+.+.+ -++.
T Consensus 300 a~~e~~~~al~~il~d----------~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~ 367 (395)
T 2fp4_B 300 VKESQVYQAFKLLTAD----------PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNI 367 (395)
T ss_dssp CCHHHHHHHHHHHHHC----------TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC----------CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHH
Confidence 3555666555444332 4578777765 7777777776 55555555552 3444 456677754 6788
Q ss_pred HHhcCCCccccCCCccc--cCHHHHHHHHhhhh
Q 006141 621 LQRSDDSGDFKRPDSLY--LTVGEAVASLSSTI 651 (659)
Q Consensus 621 L~~~g~~~~~~~~~~if--~s~~~Av~~~~~~~ 651 (659)
|+.+| + .+| +|.+||++.+-...
T Consensus 368 L~~~g-l-------~~~~~~~~~~Aa~~~v~~~ 392 (395)
T 2fp4_B 368 LTNSG-L-------PITSAVDLEDAAKKAVASV 392 (395)
T ss_dssp HHHTC-S-------CCEECSSHHHHHHHHHHTT
T ss_pred HHHCC-C-------ceEeCCCHHHHHHHHHHHh
Confidence 88888 5 355 99999999876543
No 31
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=28.74 E-value=2e+02 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCceEEEEEecCCCccC---h---------------HHHHHHHHHHHHHHHcCCEEEEEc--CChhHHHHHHh
Q 006141 571 SSLRFVILEMSAVSAID---T---------------SGTSFFKDLRKAMEKKGVELVLVN--PLAEVLEKLQR 623 (659)
Q Consensus 571 ~~~~~vILD~s~V~~ID---s---------------sgi~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~ 623 (659)
..+|.+|+|+.++-.=. - ..-.-+.++.+.++++|+++.++. .++.+.+.++.
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 46999999998864321 1 112357788899999999999884 44567788876
No 32
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=28.31 E-value=2.1e+02 Score=24.27 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=40.6
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc--CChhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN--PLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
++..+++|..- . |..|++.+..+.+.-...++.+++.. ..++........| ..+.+.+..-...+.++++.+-
T Consensus 51 ~~dlii~D~~l-~--~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g-~~~~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 51 RPDLIISDVLM-P--EMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECG-ADDFITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHC-CSEEEESSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCC-CCEEEeCCCCHHHHHHHHHHHH
Confidence 47789999863 2 45577777766554322456555554 3444555556677 7666543222233444444443
No 33
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=28.13 E-value=1.2e+02 Score=28.47 Aligned_cols=75 Identities=9% Similarity=0.119 Sum_probs=50.5
Q ss_pred CceEEEEEecCCCccChH-------------H-HHHHHHHHHHHHHcCCEEEEEc--CChhHHHHHHhcCCCccccCCCc
Q 006141 572 SLRFVILEMSAVSAIDTS-------------G-TSFFKDLRKAMEKKGVELVLVN--PLAEVLEKLQRSDDSGDFKRPDS 635 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDss-------------g-i~~L~~l~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~~~~~ 635 (659)
..+.|++|+.++- +|+. + ...+ +.++++++|+++.++. ..+.+.+.++..| +.+.+..
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lg-i~~~f~~-- 121 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLG-ITHLYQG-- 121 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHT-CCEEECS--
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC-Cchhhcc--
Confidence 3789999998872 2221 0 0111 6788899999999885 4567888999999 8766542
Q ss_pred cccCHHHHHHHHhhhhcc
Q 006141 636 LYLTVGEAVASLSSTIKA 653 (659)
Q Consensus 636 if~s~~~Av~~~~~~~~~ 653 (659)
+ .+-.++++.+.+++..
T Consensus 122 ~-k~K~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 122 Q-SDKLVAYHELLATLQC 138 (211)
T ss_dssp C-SSHHHHHHHHHHHHTC
T ss_pred c-CChHHHHHHHHHHcCc
Confidence 2 5556777766665543
No 34
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=26.97 E-value=1.9 Score=37.72 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=65.3
Q ss_pred cCcEEEEEeccceEEecchHHHHHHHHHHHH--HHhHhhhccCCCceEEEEEecCCCccChHHHHHHHHHHHHH--HHcC
Q 006141 530 IPGFLILSIEAPINFANTTYLNERILRWIEE--YEAEENLNKQSSLRFVILEMSAVSAIDTSGTSFFKDLRKAM--EKKG 605 (659)
Q Consensus 530 ~~~i~I~rl~g~L~F~na~~~~~~l~~~i~~--~~~~~~~~~~~~~~~vILD~s~V~~IDssgi~~L~~l~~~~--~~~g 605 (659)
.+++..+++.|.++-..-+.+...+++.+++ . ++++ +.+|++.....+..++- .++.-.+ .++=
T Consensus 18 ~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~~~---------~~i~-lL~~~~~f~G~~~~A~~--~d~k~~~~h~~~~ 85 (127)
T 2ook_A 18 SVFFVTLKAIGTLTHEDYLVITPMLEGALSQVDQ---------PKVS-LFLDATELDGWDLRAAW--DDLKLGLKHKSEF 85 (127)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHHTTCCC---------SSCC-EEEEEEEEEEECTTCGG--GGCCCCCTTSCCE
T ss_pred CCCEEEEEEeeeECHHHHHHHHHHHHHHHhhccC---------CCEE-EEEEccCCCCCCHHHHH--HHHHhhhhhHhcC
Confidence 3568999999999877766666666665544 2 3455 88888887777744321 1111011 1122
Q ss_pred CEEEEEcCChhHHHHHHhcCCCccccCCCccccCHHHHHHHHhh
Q 006141 606 VELVLVNPLAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLSS 649 (659)
Q Consensus 606 i~l~l~~~~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~~ 649 (659)
-++.+++-+.=++...+..+ ..-. ++.+.|++.++|.+|.++
T Consensus 86 ~RiAvV~d~~W~~~~~~~~~-~~~~-~evk~F~~~~~A~~Wl~e 127 (127)
T 2ook_A 86 ERVAILGNKDWQEWAAKIGS-WFIA-GEIKYFEDEDDALKWLRY 127 (127)
T ss_dssp EEEEEECCSSCCTTTTTGGG-GCCE-EEEEEESCHHHHHHHHHC
T ss_pred CEEEEEcChHHHHHHHHHHh-hCcC-CceEccCCHHHHHHHHhC
Confidence 47778876655554455445 3211 234789999999999763
No 35
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=26.91 E-value=64 Score=30.99 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=44.3
Q ss_pred eEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCC-----hhHHHHHHhcCCCccccCCCccccCHHHHHHHHh
Q 006141 574 RFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPL-----AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASLS 648 (659)
Q Consensus 574 ~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~~ 648 (659)
+.+++|+.++-.-+..-+..-.+..++++++|+++.++.-+ .++.+.|+..| +... .+.++.+...+.++.+
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg-~~~~--~~~i~~~~~~~~~~l~ 78 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMG-IDVS--SSIIITSGLATRLYMS 78 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTT-CCCC--GGGEEEHHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCC-CCCC--hhhEEecHHHHHHHHH
Confidence 67899998876533222223345667778889999888644 44666777677 6421 2346655555555544
Q ss_pred h
Q 006141 649 S 649 (659)
Q Consensus 649 ~ 649 (659)
.
T Consensus 79 ~ 79 (263)
T 1zjj_A 79 K 79 (263)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=25.76 E-value=52 Score=29.88 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=38.7
Q ss_pred ceEEEEEecCCCcc-----------C----hHHHHHHHHHHHHHHHcCCEEEEEcCC-----hhHHHHHHhcCCCcccc
Q 006141 573 LRFVILEMSAVSAI-----------D----TSGTSFFKDLRKAMEKKGVELVLVNPL-----AEVLEKLQRSDDSGDFK 631 (659)
Q Consensus 573 ~~~vILD~s~V~~I-----------D----ssgi~~L~~l~~~~~~~gi~l~l~~~~-----~~v~~~L~~~g~~~~~~ 631 (659)
++.|++|+.++-.- + ..-..-..++.++++++|+++.++.-+ ..+.+.++..| +.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~g-l~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFG-IIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTT-CGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcC-chhhe
Confidence 67788888765511 0 112223457778888999999877532 56788899998 75543
No 37
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=24.14 E-value=2.5e+02 Score=29.11 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHHHHHHhHhhhccCCCceEEEEE-ecCCCccChHHHHHHHHHHHHHHHcCCE--EEEEcCCh-hHHHHH
Q 006141 546 NTTYLNERILRWIEEYEAEENLNKQSSLRFVILE-MSAVSAIDTSGTSFFKDLRKAMEKKGVE--LVLVNPLA-EVLEKL 621 (659)
Q Consensus 546 na~~~~~~l~~~i~~~~~~~~~~~~~~~~~vILD-~s~V~~IDssgi~~L~~l~~~~~~~gi~--l~l~~~~~-~v~~~L 621 (659)
+.+++++.++-.+++ ++++.+++. +.++...|.-+ +.+.+..+++ +.++. +.+.+.+. +-++.|
T Consensus 294 ~~~~~~~~~~~il~d----------~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~l 361 (388)
T 2nu8_B 294 TKERVTEAFKIILSD----------DKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp CHHHHHHHHHHHHTS----------TTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC----------CCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHHH
Confidence 555656555444322 456776666 47788777766 4555555554 24444 44666664 455778
Q ss_pred HhcCCCccccCCCccc--cCHHHHHHHHhhhh
Q 006141 622 QRSDDSGDFKRPDSLY--LTVGEAVASLSSTI 651 (659)
Q Consensus 622 ~~~g~~~~~~~~~~if--~s~~~Av~~~~~~~ 651 (659)
+.+| + .+| +|.+||++.+-+..
T Consensus 362 ~~~g-~-------~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 362 ADSG-L-------NIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp HTTC-S-------SEEECSSHHHHHHHHHHHT
T ss_pred HHCC-C-------ceecCCCHHHHHHHHHHHh
Confidence 8778 4 356 99999998865443
No 38
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=23.99 E-value=34 Score=20.98 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=13.5
Q ss_pred hhhhhhhhhhhhhhccCCC
Q 006141 124 GLYSSFVPPLVYTVLGSSR 142 (659)
Q Consensus 124 GLyss~v~~liy~~fGss~ 142 (659)
.+.++.+.+++|++|+..|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4567888888888887654
No 39
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=23.11 E-value=29 Score=32.01 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=48.5
Q ss_pred CceEEEEEecCCCc-----cChHHHHHHHHH-------HHHHHHcCCEEEEEc--CChhHHHHHHhcCCCccccCCCccc
Q 006141 572 SLRFVILEMSAVSA-----IDTSGTSFFKDL-------RKAMEKKGVELVLVN--PLAEVLEKLQRSDDSGDFKRPDSLY 637 (659)
Q Consensus 572 ~~~~vILD~s~V~~-----IDssgi~~L~~l-------~~~~~~~gi~l~l~~--~~~~v~~~L~~~g~~~~~~~~~~if 637 (659)
+.+.+++|+.++-. .|..+ ..+.++ .++++++|+++.++. ....+.+.++..| +.+.+.. +
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lg-l~~~~~~--~- 92 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLG-ITHYYKG--Q- 92 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHT-CCEEECS--C-
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcC-CccceeC--C-
Confidence 48999999988642 22221 122233 788899999999885 4467888899999 8665531 2
Q ss_pred cCHHHHHHHHhhhhc
Q 006141 638 LTVGEAVASLSSTIK 652 (659)
Q Consensus 638 ~s~~~Av~~~~~~~~ 652 (659)
.+-.++++.+.+++.
T Consensus 93 kpk~~~~~~~~~~~~ 107 (191)
T 3n1u_A 93 VDKRSAYQHLKKTLG 107 (191)
T ss_dssp SSCHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHhC
Confidence 223566665555444
No 40
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.25 E-value=2e+02 Score=27.88 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=40.5
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEVLE 619 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v~~ 619 (659)
+++.+++| ...+.+|......+.++.++++++|..++++.-..+..+
T Consensus 177 ~p~lllLD-EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 177 EPKIMLFD-EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp CCSEEEEE-STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CCCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 47899999 789999999999999999999888999999987755443
No 41
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=21.75 E-value=1.1e+02 Score=30.16 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcC-----ChhHHHHHHhcCCCccccCCCccccCHHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNP-----LAEVLEKLQRSDDSGDFKRPDSLYLTVGEAVASL 647 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~-----~~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~~ 647 (659)
.+.+++|+.++-.-+..-...-.+..++++++|++++++.- ...+.+.|+..| +.. ...+.++.+-..+..+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g-~~~-~~~~~i~~~~~~~~~~l 98 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLG-FGG-LRAEQLFSSALCAARLL 98 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTT-CCS-CCGGGEEEHHHHHHHHH
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcC-CCc-CChhhEEcHHHHHHHHH
Confidence 78999999987664443333345667788899999998762 245677888888 631 12234554444444333
No 42
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=21.60 E-value=1.9e+02 Score=27.21 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhH
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEV 617 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v 617 (659)
.+++.+++| ...+.+|......+.++.++++++|..++++....+.
T Consensus 157 ~~p~lllLD-EPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 157 NEPILLFAD-EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp TCCSEEEEE-STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 357899999 7899999999999999999998889999999776543
No 43
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=21.26 E-value=64 Score=29.95 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=39.1
Q ss_pred ceEEEEEecCCCccCh---------HHHHHHHHHHHHHHHcCCEEEEEcCCh-----------------hHHHHHHhcCC
Q 006141 573 LRFVILEMSAVSAIDT---------SGTSFFKDLRKAMEKKGVELVLVNPLA-----------------EVLEKLQRSDD 626 (659)
Q Consensus 573 ~~~vILD~s~V~~IDs---------sgi~~L~~l~~~~~~~gi~l~l~~~~~-----------------~v~~~L~~~g~ 626 (659)
.+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-++ .+.+.|+..|
T Consensus 25 ~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g- 103 (211)
T 2gmw_A 25 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD- 103 (211)
T ss_dssp BCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT-
T ss_pred CCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC-
Confidence 6789999998765543 223345677788899999998775443 5677888888
Q ss_pred C
Q 006141 627 S 627 (659)
Q Consensus 627 ~ 627 (659)
+
T Consensus 104 l 104 (211)
T 2gmw_A 104 V 104 (211)
T ss_dssp C
T ss_pred C
Confidence 6
No 44
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=20.97 E-value=2e+02 Score=26.26 Aligned_cols=80 Identities=9% Similarity=0.188 Sum_probs=46.6
Q ss_pred CceEEEEEecCCCccChHHHHHHHHHHHHHHH--cCCEEEEEcCC---hhHHHHHHhcCCCccccCCCccccCHHHHHHH
Q 006141 572 SLRFVILEMSAVSAIDTSGTSFFKDLRKAMEK--KGVELVLVNPL---AEVLEKLQRSDDSGDFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 572 ~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~--~gi~l~l~~~~---~~v~~~L~~~g~~~~~~~~~~if~s~~~Av~~ 646 (659)
++..|++|+.- . |.+|++.+.++.+.-.. .++.+++.... .+........| ..+.+.+ -|..+.++++.
T Consensus 119 ~~dlillD~~l-p--~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~G-a~~~l~K--P~~~L~~~i~~ 192 (206)
T 3mm4_A 119 PFDYIFMDCQM-P--EMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAG-MDAFLDK--SLNQLANVIRE 192 (206)
T ss_dssp SCSEEEEESCC-S--SSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHT-CSEEEET--TCTTHHHHHHH
T ss_pred CCCEEEEcCCC-C--CCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCC-CCEEEcC--cHHHHHHHHHH
Confidence 57789999864 3 45688888888776443 45666655443 35555556677 7776654 24478888887
Q ss_pred HhhhhccCCCC
Q 006141 647 LSSTIKAPSAN 657 (659)
Q Consensus 647 ~~~~~~~~~~~ 657 (659)
+....+..++|
T Consensus 193 ~l~~~~~~~~~ 203 (206)
T 3mm4_A 193 IESKRHLEHHH 203 (206)
T ss_dssp HC---------
T ss_pred HHhhhHHhhhc
Confidence 76554444433
No 45
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=20.90 E-value=74 Score=30.88 Aligned_cols=72 Identities=6% Similarity=0.004 Sum_probs=46.1
Q ss_pred ceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEc-----CChhHHHHHHhcCCCc-cccCCCccccCHHHHHHH
Q 006141 573 LRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVN-----PLAEVLEKLQRSDDSG-DFKRPDSLYLTVGEAVAS 646 (659)
Q Consensus 573 ~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~-----~~~~v~~~L~~~g~~~-~~~~~~~if~s~~~Av~~ 646 (659)
.+.+++|+.++-.-+..-+.--.+..++++++|+++.++. ....+.+.++..| +. ... +.++.+.+.+.++
T Consensus 14 ~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg-~~~~~~--~~ii~~~~~~~~~ 90 (284)
T 2hx1_A 14 YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLG-LFSITA--DKIISSGMITKEY 90 (284)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTT-CTTCCG--GGEEEHHHHHHHH
T ss_pred CCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCC-cCCCCH--hhEEcHHHHHHHH
Confidence 7899999998765433222223455677888999999886 2356778888888 64 222 3455554444444
Q ss_pred H
Q 006141 647 L 647 (659)
Q Consensus 647 ~ 647 (659)
.
T Consensus 91 l 91 (284)
T 2hx1_A 91 I 91 (284)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.43 E-value=2e+02 Score=27.42 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=39.5
Q ss_pred CCceEEEEEecCCCccChHHHHHHHHHHHHHHHcCCEEEEEcCChhH
Q 006141 571 SSLRFVILEMSAVSAIDTSGTSFFKDLRKAMEKKGVELVLVNPLAEV 617 (659)
Q Consensus 571 ~~~~~vILD~s~V~~IDssgi~~L~~l~~~~~~~gi~l~l~~~~~~v 617 (659)
.+++.+++| ...+.+|......+.++.++++++|..++++....+.
T Consensus 156 ~~p~lllLD-EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 156 SRPKLLMMD-EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp TCCSEEEEE-CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred cCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 357899999 7899999999999999999998888888888777543
No 47
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=20.04 E-value=1.1e+02 Score=29.58 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCCceEEEEEecCCCccChHH---------------------------HHHHHHHHHHHHHcCCEEEEEcCCh-----hH
Q 006141 570 QSSLRFVILEMSAVSAIDTSG---------------------------TSFFKDLRKAMEKKGVELVLVNPLA-----EV 617 (659)
Q Consensus 570 ~~~~~~vILD~s~V~~IDssg---------------------------i~~L~~l~~~~~~~gi~l~l~~~~~-----~v 617 (659)
....+.+|+|+.++- +|+.. ..-..++.+.++++|+++.++.-++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 356889999999865 56542 1224567888999999999886554 56
Q ss_pred HHHHHhcCCCc
Q 006141 618 LEKLQRSDDSG 628 (659)
Q Consensus 618 ~~~L~~~g~~~ 628 (659)
.+.|+..| +.
T Consensus 135 ~~~L~~~G-l~ 144 (258)
T 2i33_A 135 IKNLERVG-AP 144 (258)
T ss_dssp HHHHHHHT-CS
T ss_pred HHHHHHcC-CC
Confidence 77888888 75
Done!