Query 006143
Match_columns 659
No_of_seqs 407 out of 2236
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 8.6E-29 3E-33 269.2 31.0 334 94-469 14-362 (429)
2 3llo_A Prestin; STAS domain, c 99.9 8.1E-25 2.8E-29 203.4 12.7 140 506-653 1-141 (143)
3 4dgh_A Sulfate permease family 99.9 9.2E-23 3.2E-27 186.3 9.3 129 516-657 1-129 (130)
4 4dgf_A Sulfate transporter sul 99.9 2.3E-22 8E-27 184.9 9.1 130 514-657 2-132 (135)
5 2kln_A Probable sulphate-trans 99.8 1.7E-21 5.9E-26 177.9 10.2 125 521-654 1-125 (130)
6 3ny7_A YCHM protein, sulfate t 99.7 2.6E-18 9E-23 154.0 9.5 104 532-649 14-117 (118)
7 2ka5_A Putative anti-sigma fac 99.6 4.3E-16 1.5E-20 141.0 10.1 109 529-652 15-124 (125)
8 3t6o_A Sulfate transporter/ant 99.6 1.3E-15 4.6E-20 136.8 8.8 106 532-651 11-120 (121)
9 1th8_B Anti-sigma F factor ant 99.6 1.6E-15 5.6E-20 134.7 8.6 107 532-652 9-115 (116)
10 4hyl_A Stage II sporulation pr 99.6 2.1E-15 7.1E-20 134.6 7.6 105 532-652 10-114 (117)
11 1h4x_A SPOIIAA, anti-sigma F f 99.6 5.6E-15 1.9E-19 131.7 10.4 107 532-653 8-114 (117)
12 1sbo_A Putative anti-sigma fac 99.6 1.5E-14 5E-19 127.2 10.8 101 532-646 10-110 (110)
13 3oiz_A Antisigma-factor antago 99.5 1.4E-14 4.6E-19 125.4 4.0 85 533-631 14-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.4 5.9E-13 2E-17 119.8 11.6 111 534-658 11-122 (123)
15 3agd_A Salt-tolerant glutamina 96.1 0.0087 3E-07 63.3 7.3 86 534-619 324-446 (456)
16 3bl4_A Uncharacterized protein 88.6 0.48 1.6E-05 41.7 4.9 103 533-652 18-123 (124)
17 3qe7_A Uracil permease; uracil 79.8 22 0.00074 38.0 14.0 84 371-455 41-138 (429)
18 2q3l_A Uncharacterized protein 66.6 9.1 0.00031 33.4 5.8 107 533-651 18-126 (126)
19 3pdw_A Uncharacterized hydrola 58.5 21 0.00071 34.6 7.5 55 577-631 6-65 (266)
20 2pr7_A Haloacid dehalogenase/e 53.4 20 0.00067 30.3 5.7 57 577-633 2-60 (137)
21 3ghf_A Septum site-determining 48.2 54 0.0019 28.2 7.5 80 535-631 16-98 (120)
22 3qgm_A P-nitrophenyl phosphata 44.3 30 0.001 33.3 6.0 55 577-631 8-67 (268)
23 3dcm_X AdoMet, uncharacterized 42.6 32 0.0011 32.3 5.5 63 585-653 24-101 (192)
24 3epr_A Hydrolase, haloacid deh 35.8 31 0.0011 33.4 4.5 72 576-649 4-80 (264)
25 2i33_A Acid phosphatase; HAD s 34.9 34 0.0012 33.6 4.6 57 574-631 56-144 (258)
26 3rst_A Signal peptide peptidas 33.9 1.2E+02 0.0042 29.1 8.5 68 534-613 3-83 (240)
27 3ib6_A Uncharacterized protein 32.9 39 0.0013 30.8 4.5 58 577-634 3-80 (189)
28 3viv_A 441AA long hypothetical 32.6 61 0.0021 31.3 5.9 66 532-613 6-71 (230)
29 2csu_A 457AA long hypothetical 32.0 1.9E+02 0.0064 30.8 10.2 85 548-652 351-443 (457)
30 3nvb_A Uncharacterized protein 31.1 2.1E+02 0.0073 29.7 10.1 54 574-627 219-292 (387)
31 3n07_A 3-deoxy-D-manno-octulos 29.1 34 0.0012 31.9 3.3 73 577-653 25-111 (195)
32 2gmw_A D,D-heptose 1,7-bisphos 26.2 53 0.0018 30.6 4.2 55 577-631 25-105 (211)
33 3ij5_A 3-deoxy-D-manno-octulos 25.8 1.5E+02 0.0051 27.8 7.3 72 576-653 48-135 (211)
34 2qxy_A Response regulator; reg 25.5 1.8E+02 0.006 24.2 7.2 54 576-635 48-103 (142)
35 1zjj_A Hypothetical protein PH 25.4 51 0.0017 31.8 4.0 71 578-650 2-77 (263)
36 2oyc_A PLP phosphatase, pyrido 24.5 93 0.0032 30.7 5.9 55 577-631 21-80 (306)
37 2yxb_A Coenzyme B12-dependent 24.2 1E+02 0.0034 27.8 5.5 71 576-654 69-143 (161)
38 2fp4_B Succinyl-COA ligase [GD 23.1 3.1E+02 0.01 28.6 9.7 72 575-653 316-391 (395)
39 3kc2_A Uncharacterized protein 22.8 57 0.0019 33.6 3.9 67 576-644 12-84 (352)
40 2hx1_A Predicted sugar phospha 22.2 68 0.0023 31.2 4.2 55 577-631 14-73 (284)
41 3n1u_A Hydrolase, HAD superfam 21.3 39 0.0013 31.2 2.1 73 576-652 18-104 (191)
42 3grc_A Sensor protein, kinase; 20.8 1.9E+02 0.0064 24.0 6.4 57 576-635 50-109 (140)
43 1vjr_A 4-nitrophenylphosphatas 20.1 56 0.0019 31.4 3.0 57 575-631 15-76 (271)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=8.6e-29 Score=269.16 Aligned_cols=334 Identities=13% Similarity=0.100 Sum_probs=254.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccc-cccch-hHHHHHHHHHHhhhccCCCcc
Q 006143 94 LRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRD-IAIGP-VAVVSLLLGTMLQNELDPINE 171 (659)
Q Consensus 94 l~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~-~~~Gp-~a~~sl~~~~~i~~~~~~~~~ 171 (659)
+++++++|++-.+.+..-.++--.+.|+||..+++++.++++++++++++|. ...|+ ++.++.+.... +
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~--~------- 84 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--P------- 84 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHG--G-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHH--h-------
Confidence 6788999999887655444444455599999999999999999999865553 33675 44444433321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--hhh--hHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHH
Q 006143 172 KAQYQRLAFTATFFAGITQVTLGFF--RLG--FLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHS 247 (659)
Q Consensus 172 ~~~~~~~a~~~t~l~Gv~~~~lg~~--rlg--~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~ 247 (659)
..++.+...++++|+++++++++ |+| ++.+++|+.|++.+++.+|+.++..++++.-|... ..
T Consensus 85 --~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~---~~-------- 151 (429)
T 3qe7_A 85 --LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA---EG-------- 151 (429)
T ss_dssp --GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB---TT--------
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC---CC--------
Confidence 12567889999999999999998 775 89999999888889999999999999987543210 00
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccC-CCCCCC
Q 006143 248 VVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIK-KGINPS 326 (659)
Q Consensus 248 ~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip-~g~p~~ 326 (659)
+..++.++.++++++++++++.++.|++ ++.++.|+++++++++++.+|..+ .+.+++.| .++|.+
T Consensus 152 ------~~~~~~~~~la~~tl~iii~~~~~~kg~-----~~~~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~~ 218 (429)
T 3qe7_A 152 ------QTPDSKTIIISITTLAVTVLGSVLFRGF-----LAIIPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPTL 218 (429)
T ss_dssp ------BCCCHHHHHHHHHHHHHHHHHHHSSSTT-----TTTHHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCCC
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHhccc-----chhhHHHHHHHHHHHHHHHhcCCC--cccccccccccccCC
Confidence 1247788889999998888776555543 333378999999999999988643 22233333 346666
Q ss_pred CccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhhhhhhhhccccccCccchhhh
Q 006143 327 SVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDY----QLDGNKEMVALGAMNVVGSMTSCYVATGSFSRS 402 (659)
Q Consensus 327 ~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~----~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS 402 (659)
..|++++ ..+. ..+.++++.++|+++..++.++..++ +.+.|||+.++|++|+++++||++|+|++..++
T Consensus 219 ~~P~f~~--~~i~----~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~ 292 (429)
T 3qe7_A 219 YTPRFEW--FAIL----TILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENI 292 (429)
T ss_dssp CCCCCCH--HHHH----HHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHH
T ss_pred CCCcccH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhH
Confidence 6666543 3333 33567778899999988888877664 457899999999999999999999999766677
Q ss_pred HHHHhhCCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHH--hccCccc
Q 006143 403 AVNFMAGCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLL--WKIDKFD 469 (659)
Q Consensus 403 ~v~~~~G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~k~~~~d 469 (659)
+++..+|++||++.+++|+++++..++ ++++++.||.+++|++.+ +.++++....++.+ .|+|..|
T Consensus 293 g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l-~lfg~i~~~Gi~~l~~~~v~~~~ 362 (429)
T 3qe7_A 293 GVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNK 362 (429)
T ss_dssp HHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence 788889999999999888888766643 678999999999999776 59999999999888 7888543
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.92 E-value=8.1e-25 Score=203.36 Aligned_cols=140 Identities=24% Similarity=0.468 Sum_probs=124.3
Q ss_pred CcceEEeccccCccccccCcCCCccccCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEec
Q 006143 506 RPRTAILGKVPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMS 585 (659)
Q Consensus 506 rp~~~~lg~~~~t~~~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s 585 (659)
||++.+||++|+|+.|+|+++||+.++.+++.|++++|+|+|+|+++|++++.+++... ..+..+.+||||+
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~--------~~~~~~~vvlDls 72 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVN--------GSENIHTVILDFT 72 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSCHHHHHHHHHHHC-------------------CCSEEEEECT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCCeEechHHHHHHHHHHHHccC--------CCCCceEEEEECC
Confidence 79999999999999999999999999999999999999999999999999998766421 0134689999999
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccC-CcccccCHHHHHHHhhhh
Q 006143 586 PVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIG-EDNIFLTVADAVSSCAPK 653 (659)
Q Consensus 586 ~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~-~~~if~sv~~Av~~~~~~ 653 (659)
+|++||+||+++|.++.++++++|++++|+|+++++++.|+++|+.+.++ ++++|+|++||+++++.+
T Consensus 73 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~~ 141 (143)
T 3llo_A 73 QVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVR 141 (143)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSSC
T ss_pred CCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887 789999999999998764
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.87 E-value=9.2e-23 Score=186.32 Aligned_cols=129 Identities=19% Similarity=0.349 Sum_probs=118.6
Q ss_pred cCccccccCcCCCccccCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHH
Q 006143 516 PRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGI 595 (659)
Q Consensus 516 ~~t~~~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi 595 (659)
++|+.|+|+++|++.+..+++.+++++|+|+|+|+++|++++.+ + .++.+.|||||++|++||+||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~v~~~~G~L~f~~a~~~~~~l~~-~------------~~~~~~vvlDls~v~~iDssgl 67 (130)
T 4dgh_A 1 SNAEMSYELAQHGRSTLPRELAVYALEGPFFFAAAETFERVMGS-I------------QETPQILILRLKWVPFMDITGI 67 (130)
T ss_dssp -CHHHHHHHHHTTCSSCCTTEEEEECCSSCCHHHHHHHHHHHHH-S------------SSCCSEEEEECTTCCCCCHHHH
T ss_pred CchhhhhhHhhccccCCCCCEEEEEEeeeEeehhHHHHHHHHHH-h------------ccCCCEEEEECCCCCcccHHHH
Confidence 36889999999999999999999999999999999999999843 1 1346899999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhhhhhc
Q 006143 596 HALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKLVEE 657 (659)
Q Consensus 596 ~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l~~~ 657 (659)
++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||+++|++++..+
T Consensus 68 ~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~~~~~~ 129 (130)
T 4dgh_A 68 QTLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALTEIEAQ 129 (130)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999998876654
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.86 E-value=2.3e-22 Score=184.90 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=111.5
Q ss_pred cccCccccccCcCCCccccCC-cEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccch
Q 006143 514 KVPRTTVYRNIQQYPEATKVP-GVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDT 592 (659)
Q Consensus 514 ~~~~t~~~~~~~~~~~~~~~~-~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDs 592 (659)
++|+|+.|+|+++| ++.+.| ++.+++++|+|+|+|+++|++++.+. .++.+.|||||++|++||+
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~L~f~~a~~~~~~l~~~-------------~~~~~~vvlDls~v~~iDs 67 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGPFFFGVADRLKGVLDVI-------------EETPKVFILRMRRVPVIDA 67 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSSBSHHHHHHHTTGGGGC-------------SSCCSEEEEECTTCSCBCH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeeceEEehhHHHHHHHHHHh-------------cCCCcEEEEEcCCCCccCH
Confidence 68999999999999 777777 99999999999999999999988421 1346899999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhhhhhc
Q 006143 593 SGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKLVEE 657 (659)
Q Consensus 593 Sgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l~~~ 657 (659)
||+++|.++.++++++|++++|+++++++++.|+++|+.+.++++++|+|++||++++++.+..-
T Consensus 68 sgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~~~~ 132 (135)
T 4dgf_A 68 TGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKLLVETA 132 (135)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.85 E-value=1.7e-21 Score=177.87 Aligned_cols=125 Identities=26% Similarity=0.536 Sum_probs=114.7
Q ss_pred cccCcCCCccccCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHH
Q 006143 521 YRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEG 600 (659)
Q Consensus 521 ~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~ 600 (659)
|+|+++||++++.+++.|++++|+|+|+|+++|++++.+++.+. .++.+.|||||++|++||+||+++|.+
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~---------~~~~~~vvlDls~v~~iDssgl~~L~~ 71 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQD---------PGQVEWFVLNAESNVEVDLTALDALDQ 71 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSCCBTTTHHHHHHHHHHHTTSS---------SSCCEEEEEECSCCSSSBCSTTTHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCceEechHHHHHHHHHHHHhcC---------CCCceEEEEECCCCChhhHHHHHHHHH
Confidence 78999999999999999999999999999999999997655321 114789999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhhh
Q 006143 601 LHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKL 654 (659)
Q Consensus 601 l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l 654 (659)
+.++++++|++++++|+++++++.|+++|+.+.+|++++|+|++||+++++.+-
T Consensus 72 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~~ 125 (130)
T 2kln_A 72 LRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRRH 125 (130)
T ss_dssp HHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC-
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998753
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.75 E-value=2.6e-18 Score=153.96 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=95.8
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
..+++.++|++|+|||+|++++++++.+.. ++.+.+||||++|++||+||+++|.++.+++++ |++
T Consensus 14 ~~~~v~v~~l~G~L~f~~a~~l~~~l~~~~-------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 14 VPDDVLVLRVIGPLFFAAAEGLFTDLESRL-------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCTTEEEEEEESCBCHHHHHHHHHHHHTTC-------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCEEEEEEeceeEehhHHHHHHHHHHhc-------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 347899999999999999999999985422 236899999999999999999999999999999 999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHH
Q 006143 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSS 649 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~ 649 (659)
++++++++++++.|+++|+.+.++++++|+|++||+++
T Consensus 80 l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 99999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.64 E-value=4.3e-16 Score=140.95 Aligned_cols=109 Identities=17% Similarity=0.294 Sum_probs=98.2
Q ss_pred ccccCCcEEEEEeCCceeeechHHHHHHHHH-HHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHh
Q 006143 529 EATKVPGVLIVRVDSAIYFSNSNYVKERILR-WLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEK 607 (659)
Q Consensus 529 ~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~ 607 (659)
+.++.+++.+++++|+|+|+|++.+++.+.+ ++.+ ..+.+|+||++|++||+||+++|.++.+++++
T Consensus 15 ~~~~~~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~------------~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~ 82 (125)
T 2ka5_A 15 PYKIVDDVVILMPNKELNIENAHLFKKWVFDEFLNK------------GYNKIFLVLSDVESIDSFSLGVIVNILKSISS 82 (125)
T ss_dssp CEEECSSCEEECCCSCCSGGGTHHHHHHHHHHTTTT------------TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHH
T ss_pred cceeeCCEEEEEEecEEecccHHHHHHHHHHHHhhC------------CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999976 4422 35789999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006143 608 REVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 608 ~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+|+++.++|+++++++.|+++|+.+.+ .+|+|++||++++..
T Consensus 83 ~g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~~ 124 (125)
T 2ka5_A 83 SGGFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVRR 124 (125)
T ss_dssp HTCEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTTC
T ss_pred cCCEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhhc
Confidence 999999999999999999999999888 599999999987754
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.60 E-value=1.3e-15 Score=136.82 Aligned_cols=106 Identities=11% Similarity=0.170 Sum_probs=96.2
Q ss_pred cCCcEEEEEeCCce---eeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHh-
Q 006143 532 KVPGVLIVRVDSAI---YFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEK- 607 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L---~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~- 607 (659)
+.+++.+++++|++ +|.|++++++++.+.+.+ .+.+.+|+||++|++||++|+++|.++++++++
T Consensus 11 ~~~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~-----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 11 HEAQVTVISFPAVFQRLRETEVEQIASTFLAAMQG-----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp EETTEEEEECCGGGSEECHHHHHHHHHHHHHTTCC-----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred EECCEEEEEEccccccCchhhHHHHHHHHHHHHhh-----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 45799999999998 899999999998654421 246789999999999999999999999999999
Q ss_pred cCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006143 608 REVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 608 ~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
+|+++.++++++++++.|+.+|+.+.+ .+|+|++||++++.
T Consensus 80 ~g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 80 QQGVFALCSVSPYCVEVLQVTHIDEVW---PRYSTKQEALLAMA 120 (121)
T ss_dssp TTCEEEEESCCHHHHHHHTTCSGGGGS---CEESSHHHHHHHTC
T ss_pred cCCEEEEEeCCHHHHHHHHHhCcccee---cccCCHHHHHHHhc
Confidence 999999999999999999999999988 59999999999874
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.59 E-value=1.6e-15 Score=134.73 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=97.2
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|.|++.+++.+.+.+.+ .+.+.+++||++|++||++|+++|.++.++++++|++
T Consensus 9 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~-----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 77 (116)
T 1th8_B 9 VKQDVLIVRLSGELDHHTAEELREQVTDVLEN-----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQ 77 (116)
T ss_dssp EETTEEEEEEEEEESHHHHHHHHHHHHHHHHS-----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCEEEEEEeeeeccccHHHHHHHHHHHHhc-----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCe
Confidence 35789999999999999999999999766532 1257899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006143 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.++|+++++++.|+.+|+.+.+ .+|+|++||+++++.
T Consensus 78 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 115 (116)
T 1th8_B 78 MVVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALGV 115 (116)
T ss_dssp EEEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhccC
Confidence 99999999999999999999887 699999999998864
No 10
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.58 E-value=2.1e-15 Score=134.58 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=95.2
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|.|++.+++.+.+++.+ . . .+|+||++|++||++|+++|.++.++++++|++
T Consensus 10 ~~~~~~v~~l~G~ld~~~~~~l~~~l~~~~~~-----------~-~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 4hyl_A 10 TEQGIDIITLHGHLDTRSSPAVQAAVLPRVTA-----------K-G-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA 76 (117)
T ss_dssp EETTEEEEEEEEEECSSSHHHHHHHHGGGCCT-----------T-C-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCEEEEEEEeEEcchhHHHHHHHHHHHHcc-----------C-C-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999998654322 1 2 899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006143 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.++|+++++++.|+.+|+.+.+ .+|+|++||++++..
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 114 (117)
T 4hyl_A 77 LVLVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGS 114 (117)
T ss_dssp EEEECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC
T ss_pred EEEEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhcc
Confidence 99999999999999999999988 599999999998764
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.58 E-value=5.6e-15 Score=131.65 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=96.1
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|.|++.+++.+.+.+.+ .+.+.+++||++|++||++|+++|.+++++++++|++
T Consensus 8 ~~~~~~vl~l~G~l~~~~~~~l~~~l~~~~~~-----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 1h4x_A 8 VTRETVVIRLFGELDHHAVEQIRAKISTAIFQ-----------GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGR 76 (117)
T ss_dssp EETTEEEEEEEEEECHHHHHHHHHHHHHHHHH-----------TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCE
T ss_pred eeCCEEEEEEEeEEchhhHHHHHHHHHHHHhc-----------CCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCE
Confidence 35789999999999999999999999776532 1256899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhh
Q 006143 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPK 653 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~ 653 (659)
+.++++++++++.|+.+|+.+.+ +|+|++||+++++..
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~~ 114 (117)
T 1h4x_A 77 TILLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRGI 114 (117)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC--
T ss_pred EEEEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHHh
Confidence 99999999999999999999987 899999999988653
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.55 E-value=1.5e-14 Score=127.17 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=91.4
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|.|++.+++.+.+++.+ ...+.+++||++|++||++|+++|.++.++++++|++
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~-----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 78 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFIST-----------TSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE 78 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHH-----------CSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhc-----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999999776543 1236899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHH
Q 006143 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADA 646 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~A 646 (659)
+.++|+++++++.|+.+|+.+.++ +|+|++||
T Consensus 79 l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 79 FILSSLKESISRILKLTHLDKIFK---ITDTVEEA 110 (110)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGSC---BCSSGGGC
T ss_pred EEEEeCCHHHHHHHHHhCccceee---ccCCcccC
Confidence 999999999999999999999884 89998876
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.48 E-value=1.4e-14 Score=125.45 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=72.6
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006143 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
.+++.+++++|+|||+|+++|++++.. .++.+.+||||++|++||+||+++|.++.++++++|+++
T Consensus 14 ~g~~~v~~l~G~L~f~~a~~~~~~l~~--------------~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 79 (99)
T 3oiz_A 14 DGRERIYRVEGQLFYASVEDFMAAFDF--------------REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEV 79 (99)
T ss_dssp TSSEEEEEEEEEECGGGHHHHHHTCCT--------------TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEEEeeEEehhhHHHHHHHHhh--------------cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEE
Confidence 346999999999999999999999831 134689999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHHcCCc
Q 006143 613 ILANPGPVVMDKLHASSFT 631 (659)
Q Consensus 613 ~la~~~~~v~~~L~~sg~~ 631 (659)
.++++++++++.|+++|+.
T Consensus 80 ~l~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 80 RIVGMNEASETMVDRLAIH 98 (99)
T ss_dssp EEESHHHHHTTCC------
T ss_pred EEEcCCHHHHHHHHHhcCC
Confidence 9999999999999999875
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.43 E-value=5.9e-13 Score=119.82 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=97.9
Q ss_pred CcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEE
Q 006143 534 PGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLI 613 (659)
Q Consensus 534 ~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~ 613 (659)
.++.++++.|+++..+++.+++++.+.+.+ .+.+++|+|+++|+++|++|++.|.++.+.++..|.+++
T Consensus 11 ~~vlvv~l~G~lD~~~a~~l~~~ll~~i~~-----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~ 79 (123)
T 3zxn_A 11 DDYWVVAIEETLHDQSVIQFKEELLHNITG-----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFV 79 (123)
T ss_dssp TTEEEEECCCCC-CHHHHHHHHHHHHHHTS-----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEEeEeeCHHHHHHHHHHHHHHHHh-----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEE
Confidence 458999999999999999999999776543 346899999999999999999999999999999999999
Q ss_pred EEcCChhHHHHHHHcCCc-cccCCcccccCHHHHHHHhhhhhhhcC
Q 006143 614 LANPGPVVMDKLHASSFT-SLIGEDNIFLTVADAVSSCAPKLVEEQ 658 (659)
Q Consensus 614 la~~~~~v~~~L~~sg~~-~~~~~~~if~sv~~Av~~~~~~l~~~~ 658 (659)
+++.+|++.+.|..+|+. +.+ .+|.|+++|++.+....+.+|
T Consensus 80 l~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~~~~~~~ 122 (123)
T 3zxn_A 80 LTGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKNLARMEQ 122 (123)
T ss_dssp EECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHHHHTC--
T ss_pred EEcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHHhhhhhc
Confidence 999999999999999996 555 699999999999987776665
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.10 E-value=0.0087 Score=63.30 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=67.3
Q ss_pred CcEEEEEeCCceeeechHHHHHHHHHHHHhHH-------------------HHHH---------------h---hhcCCC
Q 006143 534 PGVLIVRVDSAIYFSNSNYVKERILRWLEDEE-------------------EEVK---------------A---ATYQPR 576 (659)
Q Consensus 534 ~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~-------------------~~~~---------------~---~~~~~~ 576 (659)
+++.+++++|.+.|+.++++.+++.+.+...+ ++.. + ......
T Consensus 324 ~~~~~~~l~g~~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (456)
T 3agd_A 324 GDRVFLHLQGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDGP 403 (456)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCCC
T ss_pred CcEEEEEeeceechhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 46999999999999999999888865411100 0000 0 112356
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCCh
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGP 619 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~ 619 (659)
.+.||||+++|+.+|..|..++.+..++++..|.++++..+..
T Consensus 404 ~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~~ 446 (456)
T 3agd_A 404 IRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPER 446 (456)
T ss_dssp CCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 7799999999999999999999999999999999999998873
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=88.60 E-value=0.48 Score=41.72 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCcEEEEEeCC--ceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCC
Q 006143 533 VPGVLIVRVDS--AIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREV 610 (659)
Q Consensus 533 ~~~v~Ilrl~g--~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi 610 (659)
.+||+.+++.+ +++-..+..+-+++.+. .+ .....+++|++....++..+-+.+.+-. .=-
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l-~~-----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~ 80 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQL-CG-----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QAS 80 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHH-HT-----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEE
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHH-hC-----------CCceEEEEEcccccCCCHHHHHHHhCcc-----cee
Confidence 47999999998 67777777777776552 22 2358999999999889988877776622 113
Q ss_pred EEEEEcCChhHHHHHHH-cCCccccCCcccccCHHHHHHHhhh
Q 006143 611 QLILANPGPVVMDKLHA-SSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 611 ~l~la~~~~~v~~~L~~-sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
.+.+.+.++-.+-.-+. .++...-.+-++|.|.+||++|+.+
T Consensus 81 a~Al~g~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 81 RIALLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEEEECSSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 35566665532221111 1222222344799999999999863
No 17
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=79.80 E-value=22 Score=37.99 Aligned_cols=84 Identities=19% Similarity=0.140 Sum_probs=51.6
Q ss_pred cCChhHHHHHhhhhhhhhccccc--cC-cc-chhh----hHHHHhhCCCchhhHHHHHHHH-HHHHHHh-----hhhhhh
Q 006143 371 LDGNKEMVALGAMNVVGSMTSCY--VA-TG-SFSR----SAVNFMAGCETAVSNIVMSCVV-FLTLEFI-----TPLFKY 436 (659)
Q Consensus 371 ~d~nqEl~a~G~aNi~~s~fg~~--p~-t~-s~sr----S~v~~~~G~~T~~s~iv~a~~~-ll~ll~l-----~~l~~~ 436 (659)
.|++..+++-|++.++=+++++. |. .| +|+- +++.. .|-++-+.+++.+.++ ++..+++ ..+.++
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56678999999999998887543 33 11 2222 22211 2333334444444433 3333332 258899
Q ss_pred ccHHHHHHHHHHHHhhhcC
Q 006143 437 TPNAILASIIINAVISLID 455 (659)
Q Consensus 437 iP~~vLa~ili~~~~~li~ 455 (659)
+|..+.+.++...|+.+..
T Consensus 120 ~PpvviG~~i~~IGl~l~~ 138 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELAG 138 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHHH
Confidence 9999999999988888864
No 18
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=66.60 E-value=9.1 Score=33.36 Aligned_cols=107 Identities=10% Similarity=0.077 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHH--HHHHhcCC
Q 006143 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLH--RSLEKREV 610 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~--~~l~~~gi 610 (659)
.+++..+++.|.++=..-+.+...+.+.+++. ..+.-.+.+|++.....+..+ +..++. ....++=-
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~---------~~~~i~ll~~~~~f~G~~~~a--~~~d~k~~~~h~~~~~ 86 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALAGI---------KTPEIVALIDITELDGLSLHA--AWDDLKLGLKHGKEFK 86 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTTTC---------CSSCEEEEEEEEEEEEECHHH--HHHHHHHHHHHGGGEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHHhC---------CCceEEEEEEecCCCCCCHHH--HHHHHHhhhhHHhcCC
Confidence 35688999999997766666666665444331 111145888998877777444 333333 12223346
Q ss_pred EEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006143 611 QLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 611 ~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
++.+++-++=+....+..+.+-. ++-+.|.+.++|.+|+.
T Consensus 87 RiAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 87 RVAIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHHC
T ss_pred EEEEEcChHHHHHHHHHHhhccC-CceeccCCHHHHHHHhC
Confidence 77788776655555554443321 24578899999999863
No 19
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=58.50 E-value=21 Score=34.60 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=40.8
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEE-----cCChhHHHHHHHcCCc
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILA-----NPGPVVMDKLHASSFT 631 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la-----~~~~~v~~~L~~sg~~ 631 (659)
.+.|++|+.++-.=+...+..-.+..++++++|++++++ .....+.+.++..|+.
T Consensus 6 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 6 YKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 689999999985433333344567778889999999999 3345678888888875
No 20
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=53.45 E-value=20 Score=30.33 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=38.9
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHHcCCccc
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP--GPVVMDKLHASSFTSL 633 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~sg~~~~ 633 (659)
.+.+++|+.++-.=+..-..-..++.+.++++|+++.++.- ...+.+.++..|+.+.
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~ 60 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGV 60 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTS
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhh
Confidence 46899999986633333555678888999999999987644 3345666666554443
No 21
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=48.15 E-value=54 Score=28.18 Aligned_cols=80 Identities=6% Similarity=0.186 Sum_probs=52.2
Q ss_pred cEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCC-ccchhHHHHHHHHHHHHHhcCCEEE
Q 006143 535 GVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVT-DIDTSGIHALEGLHRSLEKREVQLI 613 (659)
Q Consensus 535 ~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~-~IDsSgi~~L~~l~~~l~~~gi~l~ 613 (659)
+..++++.. .+-+.+++.+.+.+++.. +-=.-..||||++.+. .+| |.++.+.++++|..++
T Consensus 16 ~l~vl~l~~----~d~~~l~~~L~~ki~~aP-------~FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 16 TLSVVHLHE----AEPEVIRQALEDKIAQAP-------AFLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRII 78 (120)
T ss_dssp CCEEEEEES----CCHHHHHHHHHHHHHHSH-------HHHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEE
T ss_pred eEEEEEeCC----CCHHHHHHHHHHHHHhCh-------HhhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEE
Confidence 345555432 455677777766665421 1012357999999885 333 6778888999998875
Q ss_pred -EEcCChh-HHHHHHHcCCc
Q 006143 614 -LANPGPV-VMDKLHASSFT 631 (659)
Q Consensus 614 -la~~~~~-v~~~L~~sg~~ 631 (659)
+.+++++ .++..+..|+-
T Consensus 79 GV~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 79 GVSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EEESCCCHHHHHHHHHHTCC
T ss_pred EEeCCCcHHHHHHHHHCCCC
Confidence 4555644 78888888875
No 22
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=44.29 E-value=30 Score=33.35 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=40.3
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHHcCCc
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP-----GPVVMDKLHASSFT 631 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~ 631 (659)
.+.|++|+.++-.=+..-+..-.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 8 ~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 8 KKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred CCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 68999999988543332233356777888899999999843 34678888888875
No 23
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=42.64 E-value=32 Score=32.31 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=44.0
Q ss_pred cCCCccchhHHHHHHHHHHHHHhcC-CEEEEEcCChhHHHHHHH--------cCC------ccccCCcccccCHHHHHHH
Q 006143 585 SPVTDIDTSGIHALEGLHRSLEKRE-VQLILANPGPVVMDKLHA--------SSF------TSLIGEDNIFLTVADAVSS 649 (659)
Q Consensus 585 s~V~~IDsSgi~~L~~l~~~l~~~g-i~l~la~~~~~v~~~L~~--------sg~------~~~~~~~~if~sv~~Av~~ 649 (659)
++|+++| +.++.+.++.-| .++++++|.....+.-++ .|- .|.+..-++++|++||++.
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4677776 456777888888 789999998754432222 222 3445556899999999999
Q ss_pred hhhh
Q 006143 650 CAPK 653 (659)
Q Consensus 650 ~~~~ 653 (659)
|+++
T Consensus 98 ~~~~ 101 (192)
T 3dcm_X 98 IESV 101 (192)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9854
No 24
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=35.79 E-value=31 Score=33.40 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=46.4
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc---CC--hhHHHHHHHcCCccccCCcccccCHHHHHHH
Q 006143 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN---PG--PVVMDKLHASSFTSLIGEDNIFLTVADAVSS 649 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~---~~--~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~ 649 (659)
..+.|++|+.++-.-+...+..-.+..++++++|++++++. .+ ..+.+.++..|+... .+.++.+...+.+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~--~~~ii~~~~~~~~~ 80 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP--LETIYTATMATVDY 80 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC--GGGEEEHHHHHHHH
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC--hhheecHHHHHHHH
Confidence 36899999999844333333445567778888999999987 33 357788888887432 22344443444433
No 25
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=34.85 E-value=34 Score=33.60 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCceEEEEEecCCCccchhH---------------------------HHHHHHHHHHHHhcCCEEEEEcCCh-----hH
Q 006143 574 QPRIQFLIVEMSPVTDIDTSG---------------------------IHALEGLHRSLEKREVQLILANPGP-----VV 621 (659)
Q Consensus 574 ~~~~~~VILD~s~V~~IDsSg---------------------------i~~L~~l~~~l~~~gi~l~la~~~~-----~v 621 (659)
....+.||+|+.++- +|+.. .....++.+.++++|+++.++.-++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 456889999999865 55531 2234567888999999999986554 46
Q ss_pred HHHHHHcCCc
Q 006143 622 MDKLHASSFT 631 (659)
Q Consensus 622 ~~~L~~sg~~ 631 (659)
.+.|+..|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 7788888876
No 26
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=33.91 E-value=1.2e+02 Score=29.11 Aligned_cols=68 Identities=7% Similarity=0.084 Sum_probs=43.5
Q ss_pred CcEEEEEeCCceeee------------chHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHH
Q 006143 534 PGVLIVRVDSAIYFS------------NSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGL 601 (659)
Q Consensus 534 ~~v~Ilrl~g~L~F~------------na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l 601 (659)
++|.+++++|++.=. +.+.+.+.+.+.- ..++++.|||+... ..-|.++.+.+.+.
T Consensus 3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~-----------~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~ 70 (240)
T 3rst_A 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAK-----------DDKTVKGIVLKVNS-PGGGVYESAEIHKK 70 (240)
T ss_dssp CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHH-----------HCTTEEEEEEEEEE-CCBCHHHHHHHHHH
T ss_pred CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHH-----------hCCCcEEEEEEecC-CCCCHHHHHHHHHH
Confidence 467888888887543 2344555443322 24568999998764 45677777777777
Q ss_pred HHHHHh-cCCEEE
Q 006143 602 HRSLEK-REVQLI 613 (659)
Q Consensus 602 ~~~l~~-~gi~l~ 613 (659)
.+.+++ .++.++
T Consensus 71 l~~~~~~~~kPVi 83 (240)
T 3rst_A 71 LEEIKKETKKPIY 83 (240)
T ss_dssp HHHHHHHHCCCEE
T ss_pred HHHHHHhCCCeEE
Confidence 777776 555543
No 27
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=32.93 E-value=39 Score=30.83 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=39.6
Q ss_pred ceEEEEEecCCCcc---------------chhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHHcCCcccc
Q 006143 577 IQFLIVEMSPVTDI---------------DTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLHASSFTSLI 634 (659)
Q Consensus 577 ~~~VILD~s~V~~I---------------DsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~ 634 (659)
++.|++|+.++-.- +..-..-..++.+.++++|+++.++.-+ ..+.+.|+..|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 56788888765511 1122234567788889999999886532 5688899999986654
No 28
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=32.64 E-value=61 Score=31.28 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=43.2
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006143 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
..+.+.++.++|+++-..++++.+.+.+.-+ ++.+.|+|....-..- +....++++.+++..+.
T Consensus 6 ~~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~------------~~~~~Ivl~inspGG~----v~~~~~i~~~i~~~~~P 69 (230)
T 3viv_A 6 AKNIVYVAQIKGQITSYTYDQFDRYITIAEQ------------DNAEAIIIELDTPGGR----ADAMMNIVQRIQQSKIP 69 (230)
T ss_dssp CCCEEEEEEEESCBCHHHHHHHHHHHHHHHH------------TTCSEEEEEEEBSCEE----HHHHHHHHHHHHTCSSC
T ss_pred CCCeEEEEEEeCEECHHHHHHHHHHHHHHhc------------CCCCEEEEEEeCCCcC----HHHHHHHHHHHHhCCCC
Confidence 3467999999999998888888888754321 2367888865422221 23445666667666655
Q ss_pred EE
Q 006143 612 LI 613 (659)
Q Consensus 612 l~ 613 (659)
++
T Consensus 70 Vi 71 (230)
T 3viv_A 70 VI 71 (230)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 29
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=31.97 E-value=1.9e+02 Score=30.83 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=51.6
Q ss_pred echHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCc--cc--hhHHHHHHHHHHHHHhcCCEEEEEcC----Ch
Q 006143 548 SNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTD--ID--TSGIHALEGLHRSLEKREVQLILANP----GP 619 (659)
Q Consensus 548 ~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~--ID--sSgi~~L~~l~~~l~~~gi~l~la~~----~~ 619 (659)
++.+.+++.+...+++ +++..|++++..-.+ ++ ..+ +.+.+..++++ .++.++.+.. .+
T Consensus 351 a~~~~~~~al~~~l~d-----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~ 417 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD-----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSE 417 (457)
T ss_dssp CCHHHHHHHHHHHHHS-----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTH
T ss_pred CCHHHHHHHHHHHhcC-----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchH
Confidence 4566777777655543 457788888753322 32 222 34444444443 5566665433 24
Q ss_pred hHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006143 620 VVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 620 ~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.++.|+.+|+ .+|.|.++|++++..
T Consensus 418 ~~~~~L~~~Gi-------p~~~spe~Av~al~~ 443 (457)
T 2csu_A 418 KAKELLEKNGI-------PTYERPEDVASAAYA 443 (457)
T ss_dssp HHHHHHHTTTC-------CEESSHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CccCCHHHHHHHHHH
Confidence 57788887764 489999999998764
No 30
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=31.06 E-value=2.1e+02 Score=29.75 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCCceEEEEEecCCCcc-----c---------h----hHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHH
Q 006143 574 QPRIQFLIVEMSPVTDI-----D---------T----SGIHALEGLHRSLEKREVQLILANP--GPVVMDKLHA 627 (659)
Q Consensus 574 ~~~~~~VILD~s~V~~I-----D---------s----Sgi~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~ 627 (659)
...+|.+|+|+.++-.= | - ..-..+.++.+.++++|+++.++.- ++.+.+.++.
T Consensus 219 ~~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 219 GKFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp TCCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred hCCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 45689999999876422 1 0 1124578889999999999999854 4567888876
No 31
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=29.09 E-value=34 Score=31.91 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=48.1
Q ss_pred ceEEEEEecCCC-----ccchhHHHHHHHH-------HHHHHhcCCEEEEEcC--ChhHHHHHHHcCCccccCCcccccC
Q 006143 577 IQFLIVEMSPVT-----DIDTSGIHALEGL-------HRSLEKREVQLILANP--GPVVMDKLHASSFTSLIGEDNIFLT 642 (659)
Q Consensus 577 ~~~VILD~s~V~-----~IDsSgi~~L~~l-------~~~l~~~gi~l~la~~--~~~v~~~L~~sg~~~~~~~~~if~s 642 (659)
.+.|++|+.++- +++..+ ..+.++ .+.++++|+++.++.- ...+.+.++..|+.+.+.. ..+
T Consensus 25 ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~---~k~ 100 (195)
T 3n07_A 25 IKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG---QDD 100 (195)
T ss_dssp CCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS---CSS
T ss_pred CCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC---CCC
Confidence 689999998753 222222 223334 7888999999988854 5568889999998776532 244
Q ss_pred HHHHHHHhhhh
Q 006143 643 VADAVSSCAPK 653 (659)
Q Consensus 643 v~~Av~~~~~~ 653 (659)
-.++++.+.++
T Consensus 101 k~~~~~~~~~~ 111 (195)
T 3n07_A 101 KVQAYYDICQK 111 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 55666655443
No 32
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=26.16 E-value=53 Score=30.57 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=39.8
Q ss_pred ceEEEEEecCCCccch---------hHHHHHHHHHHHHHhcCCEEEEEcCCh-----------------hHHHHHHHcCC
Q 006143 577 IQFLIVEMSPVTDIDT---------SGIHALEGLHRSLEKREVQLILANPGP-----------------VVMDKLHASSF 630 (659)
Q Consensus 577 ~~~VILD~s~V~~IDs---------Sgi~~L~~l~~~l~~~gi~l~la~~~~-----------------~v~~~L~~sg~ 630 (659)
.+.+++|+.++-.-+. .-..-..++.+.++++|+++.++.-++ .+.+.|+..|+
T Consensus 25 ~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 104 (211)
T 2gmw_A 25 VPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDV 104 (211)
T ss_dssp BCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 6789999998765543 223446777888899999998875443 46778888776
Q ss_pred c
Q 006143 631 T 631 (659)
Q Consensus 631 ~ 631 (659)
.
T Consensus 105 ~ 105 (211)
T 2gmw_A 105 D 105 (211)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=25.80 E-value=1.5e+02 Score=27.78 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred CceEEEEEecCCCccchh--------------HHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHHcCCccccCCccc
Q 006143 576 RIQFLIVEMSPVTDIDTS--------------GIHALEGLHRSLEKREVQLILANP--GPVVMDKLHASSFTSLIGEDNI 639 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsS--------------gi~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~sg~~~~~~~~~i 639 (659)
..+.||+|+.++- +|+. -...+ +.+.++++|+++.++.- .+.+.+.++..|+.+.+.. +
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~--~ 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG--Q 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS--C
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc--c
Confidence 4789999998862 2221 00111 67889999999999854 4578899999998776642 2
Q ss_pred ccCHHHHHHHhhhh
Q 006143 640 FLTVADAVSSCAPK 653 (659)
Q Consensus 640 f~sv~~Av~~~~~~ 653 (659)
.+-.++++.+.++
T Consensus 123 -k~K~~~l~~~~~~ 135 (211)
T 3ij5_A 123 -SDKLVAYHELLAT 135 (211)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHH
Confidence 4556666665544
No 34
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.52 E-value=1.8e+02 Score=24.22 Aligned_cols=54 Identities=6% Similarity=0.165 Sum_probs=33.9
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC--hhHHHHHHHcCCccccC
Q 006143 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG--PVVMDKLHASSFTSLIG 635 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~sg~~~~~~ 635 (659)
.+..+++|+ .. |..|.+.+.++.+.. .+..+++.... .+........|..+.+.
T Consensus 48 ~~dlvi~d~--~~--~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~ 103 (142)
T 2qxy_A 48 KIDLVFVDV--FE--GEESLNLIRRIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYIL 103 (142)
T ss_dssp CCSEEEEEC--TT--THHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEE
T ss_pred CCCEEEEeC--CC--CCcHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEe
Confidence 467899998 43 556777777777542 35776665443 34445555667766653
No 35
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=25.39 E-value=51 Score=31.79 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006143 578 QFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 578 ~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
+.+++|+.++-.-+..-+..-.+..+.++++|+++.++.-+ .++.+.|+..|+... .+.++.+...+.+++
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~--~~~i~~~~~~~~~~l 77 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS--SSIIITSGLATRLYM 77 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCC--GGGEEEHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC--hhhEEecHHHHHHHH
Confidence 57899998876533222233445666778889999888654 346666766676421 234555544444443
No 36
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=24.52 E-value=93 Score=30.68 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=39.7
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHHcCCc
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP-----GPVVMDKLHASSFT 631 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~ 631 (659)
.+.+++|+.++-.-+..-+..-.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 67899999987665443334456677788899999998762 23567888888774
No 37
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.24 E-value=1e+02 Score=27.78 Aligned_cols=71 Identities=10% Similarity=0.214 Sum_probs=44.7
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcC---CEEEEEcCChh-HHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006143 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKRE---VQLILANPGPV-VMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~g---i~l~la~~~~~-v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
+.+.|.+-+... +....+.++.+.+++.| +++++-+...+ -.+.++..|....++++ .+.+++++++.
T Consensus 69 ~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~~ 140 (161)
T 2yxb_A 69 DVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKVR 140 (161)
T ss_dssp TCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHHH
T ss_pred CCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHHH
Confidence 456777765543 45677788888887764 77877776432 34457778875434322 14577888776
Q ss_pred hhh
Q 006143 652 PKL 654 (659)
Q Consensus 652 ~~l 654 (659)
..+
T Consensus 141 ~~~ 143 (161)
T 2yxb_A 141 KLA 143 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 38
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=23.09 E-value=3.1e+02 Score=28.57 Aligned_cols=72 Identities=17% Similarity=0.319 Sum_probs=46.8
Q ss_pred CCceEEEEEe-cCCCccchhHHHHHHHHHHHHHhcCCEEE--EEcCChh-HHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006143 575 PRIQFLIVEM-SPVTDIDTSGIHALEGLHRSLEKREVQLI--LANPGPV-VMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 575 ~~~~~VILD~-s~V~~IDsSgi~~L~~l~~~l~~~gi~l~--la~~~~~-v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
++++.++++. .++...|.-+ +.+.+..++++ .++.++ +.+.+.+ -++.|+.+|+ .. ..+.|.+||++..
T Consensus 316 ~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~L~~~gl-~~----~~~~~~~~Aa~~~ 388 (395)
T 2fp4_B 316 PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNILTNSGL-PI----TSAVDLEDAAKKA 388 (395)
T ss_dssp TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHHHHHTCS-CC----EECSSHHHHHHHH
T ss_pred CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHHHHHCCC-ce----EeCCCHHHHHHHH
Confidence 5577777765 6777777776 55666666653 455554 4566543 6788888774 11 1349999999977
Q ss_pred hhh
Q 006143 651 APK 653 (659)
Q Consensus 651 ~~~ 653 (659)
-..
T Consensus 389 v~~ 391 (395)
T 2fp4_B 389 VAS 391 (395)
T ss_dssp HHT
T ss_pred HHH
Confidence 644
No 39
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=22.81 E-value=57 Score=33.62 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=49.1
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHH-HcCCccccCCcccccCHH
Q 006143 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLH-ASSFTSLIGEDNIFLTVA 644 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~-~sg~~~~~~~~~if~sv~ 644 (659)
..+.+++|+.+|-+-+...+..-.+..+.++++|+++.++.-+ .+..++|+ ..|+. +.+++++.+..
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~~ 84 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSHT 84 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTTG
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehHH
Confidence 4688999999998877776666777888889999998886432 45777887 57873 34556666543
No 40
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=22.18 E-value=68 Score=31.21 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=38.8
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHHcCCc
Q 006143 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP-----GPVVMDKLHASSFT 631 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~ 631 (659)
.+.+++|+.++-.-+...+..-.+..+.++++|+++.++.- ...+.+.++..|+.
T Consensus 14 ~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~ 73 (284)
T 2hx1_A 14 YKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF 73 (284)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred CCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence 68999999987654332223334566778889999998752 34678888888875
No 41
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=21.29 E-value=39 Score=31.17 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=46.8
Q ss_pred CceEEEEEecCCCc-----cchhHHHHHHHH-------HHHHHhcCCEEEEEcC--ChhHHHHHHHcCCccccCCccccc
Q 006143 576 RIQFLIVEMSPVTD-----IDTSGIHALEGL-------HRSLEKREVQLILANP--GPVVMDKLHASSFTSLIGEDNIFL 641 (659)
Q Consensus 576 ~~~~VILD~s~V~~-----IDsSgi~~L~~l-------~~~l~~~gi~l~la~~--~~~v~~~L~~sg~~~~~~~~~if~ 641 (659)
.++.+++|+.++-. .|..+ ..+.++ .+.++++|+++.++.- ...+.+.++..|+.+.+.. + .
T Consensus 18 ~ik~vifD~DGtL~~~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~--~-k 93 (191)
T 3n1u_A 18 KIKCLICDVDGVLSDGLLHIDNHG-NELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKG--Q-V 93 (191)
T ss_dssp TCSEEEECSTTTTBCSCCEECTTC-CEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECS--C-S
T ss_pred cCCEEEEeCCCCCCCCceeecCCc-hhhhhccccChHHHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeC--C-C
Confidence 47899999988642 22211 223333 7888999999998854 4578889999898776532 2 2
Q ss_pred CHHHHHHHhhh
Q 006143 642 TVADAVSSCAP 652 (659)
Q Consensus 642 sv~~Av~~~~~ 652 (659)
+-.++++.+.+
T Consensus 94 pk~~~~~~~~~ 104 (191)
T 3n1u_A 94 DKRSAYQHLKK 104 (191)
T ss_dssp SCHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 23555555443
No 42
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.79 E-value=1.9e+02 Score=23.98 Aligned_cols=57 Identities=11% Similarity=0.286 Sum_probs=37.5
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHH---HHHHcCCccccC
Q 006143 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMD---KLHASSFTSLIG 635 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~---~L~~sg~~~~~~ 635 (659)
++..|++|..- . |..|.+.+.++.+.....++.+++.....+... .....|..+.+.
T Consensus 50 ~~dlvi~d~~l-~--~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~ 109 (140)
T 3grc_A 50 PYAAMTVDLNL-P--DQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLE 109 (140)
T ss_dssp CCSEEEECSCC-S--SSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEEC
T ss_pred CCCEEEEeCCC-C--CCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEe
Confidence 36789999763 2 566888888887755556888888877654433 233456666553
No 43
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=20.11 E-value=56 Score=31.40 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred CCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc---C--ChhHHHHHHHcCCc
Q 006143 575 PRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN---P--GPVVMDKLHASSFT 631 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~---~--~~~v~~~L~~sg~~ 631 (659)
...+.+++|+.++=.=+..-...-.+..+.++++|++++++. . ...+.+.++..|+.
T Consensus 15 ~~~~~v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~ 76 (271)
T 1vjr_A 15 DKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVD 76 (271)
T ss_dssp GGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCC
T ss_pred cCCCEEEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 447899999988654332222333566778899999999987 2 24577788877763
Done!