BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006145
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 18/194 (9%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTR-NFMHH 523
+ FSL EL+ A++NF +G G G++Y+GRL +GT VA++ LK ++ F
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 524 IELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ-SLTW 582
+E+IS HR+L+ G C + + L++ Y+ NG++ S + E Q L W
Sbjct: 86 VEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQPPLDW 138
Query: 583 TQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK- 641
+R A+G A+G+ +LH P + ++K +ILLD+ A + + L L + +
Sbjct: 139 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXH 198
Query: 642 --------VGHVIP 647
+GH+ P
Sbjct: 199 VXXAVRGTIGHIAP 212
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTR-NFMHH 523
+ FSL EL+ A++NF +G G G++Y+GRL +G VA++ LK ++ F
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 524 IELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ-SLTW 582
+E+IS HR+L+ G C + + L++ Y+ NG++ S + E Q L W
Sbjct: 78 VEMISMAVHRNLLRLRGFCM-------TPTERLLVYPYMANGSVASCLRERPESQPPLDW 130
Query: 583 TQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE-- 640
+R A+G A+G+ +LH P + ++K +ILLD+ A + + L L + +
Sbjct: 131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXH 190
Query: 641 -------KVGHVIP 647
+GH+ P
Sbjct: 191 VXXAVRGXIGHIAP 204
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 12/171 (7%)
Query: 463 AYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMH 522
+YR L +LEEATNNFD +G G G++Y+G L++G VA++ + F
Sbjct: 26 SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 523 HIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL-RSWISEGHAHQSLT 581
IE +S RH HLVS +G C E + + LI++Y+ NG L R S++
Sbjct: 85 EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
W QR+ IG A+G+ +LHT + ++K +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGI 185
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 12/171 (7%)
Query: 463 AYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMH 522
+YR L +LEEATNNFD +G G G++Y+G L++G VA++ + F
Sbjct: 26 SYRV-PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFET 84
Query: 523 HIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL-RSWISEGHAHQSLT 581
IE +S RH HLVS +G C E + + LI++Y+ NG L R S++
Sbjct: 85 EIETLSFCRHPHLVSLIGFCDE-------RNEMILIYKYMENGNLKRHLYGSDLPTMSMS 137
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
W QR+ IG A+G+ +LHT + ++K +ILLD+N V KI+ + +
Sbjct: 138 WEQRLEICIGAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGI 185
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 464 YRTFSLEELEEATNNFDTSAF------MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHS- 516
+ +FS EL+ TNNFD MGEG G +Y+G + N T + M +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 517 --TRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+ F I++++K +H +LV LG F DD + L++ Y+PNG+L +S
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSCL 124
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
L+W R A G A GI FLH ++K +ILLD+ AKIS + L
Sbjct: 125 DGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR 181
Query: 635 LAE 637
+E
Sbjct: 182 ASE 184
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 464 YRTFSLEELEEATNNFDTSAF------MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHS- 516
+ +FS EL+ TNNFD MGEG G +Y+G + N T + M +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 517 --TRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+ F I++++K +H +LV LG F DD + L++ Y+PNG+L +S
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSCL 124
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
L+W R A G A GI FLH ++K +ILLD+ AKIS + L
Sbjct: 125 DGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR 181
Query: 635 LAE 637
+E
Sbjct: 182 ASE 184
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 464 YRTFSLEELEEATNNFDTSAF------MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHS- 516
+ +FS EL+ TNNFD MGEG G +Y+G + N T + M +
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 65
Query: 517 --TRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+ F I++++K +H +LV LG F DD + L++ Y+PNG+L +S
Sbjct: 66 ELKQQFDQEIKVMAKCQHENLVELLG--FSSDGDD-----LCLVYVYMPNGSLLDRLSCL 118
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
L+W R A G A GI FLH ++K +ILLD+ AKIS + L
Sbjct: 119 DGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR 175
Query: 635 LAE 637
+E
Sbjct: 176 ASE 178
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 464 YRTFSLEELEEATNNFDTSAF------MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHS- 516
+ +FS EL+ TNNFD GEG G +Y+G + N T + M +
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 62
Query: 517 --TRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+ F I++ +K +H +LV LG F DD + L++ Y PNG+L +S
Sbjct: 63 ELKQQFDQEIKVXAKCQHENLVELLG--FSSDGDD-----LCLVYVYXPNGSLLDRLSCL 115
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
L+W R A G A GI FLH ++K +ILLD+ AKIS + L
Sbjct: 116 DGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLAR 172
Query: 635 LAE 637
+E
Sbjct: 173 ASE 175
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 131/312 (41%), Gaps = 54/312 (17%)
Query: 26 EQLQSSQAQTLLRIQGLLNNPAVLSSWNITTEFCNTEPTSSLTVVCYEESITQLHIVGN- 84
E Q LL+I+ L NP LSSW TT+ CN + L V+C ++ TQ + V N
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR---TWLGVLC--DTDTQTYRVNNL 55
Query: 85 --------KRAPM------LP-LSFSMDSFVTTLV--------KLPDLKVLRLVSLGLWG 121
K P+ LP L+F + LV KL L L + + G
Sbjct: 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 122 PLSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSL-PI 180
+ +S++ +L L+ S N L+G +P D N ++G +PD GS +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Query: 181 LAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNALG 239
+++ N G +P +F+ L NL + LS N G+ F Q + L N+L
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 240 PQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITY 299
KVG LSKN L LDL +NR G PQ L L +
Sbjct: 235 FDLGKVG-------LSKN---------------LNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 300 LNIADNKLTGKL 311
LN++ N L G++
Sbjct: 273 LNVSFNNLCGEI 284
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 37/284 (13%)
Query: 93 SFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLS-SLEILNMSSNFLNGAI--PX 149
+FS + + TL+K+ LKVL L G L ++ LS SL L++SSN +G I
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 150 XXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLA 209
N G++P L + L L L N +GT+P S L LR L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSS 269
L N GE+P L Y++ L+ T+IL N IP+ +S+
Sbjct: 446 LWLNMLEGEIP--QELMYVKTLE------------------TLILDFNDLTGEIPSGLSN 485
Query: 270 YYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSN 329
L + LS+NR G P+ + L ++ L +++N +G + +L L ++DL++N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 330 LLTGQLPNCLLAGS--------KNRVVLYARN------CLAAGN 359
L G +P + S + +Y +N C AGN
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 122/261 (46%), Gaps = 14/261 (5%)
Query: 92 LSFSMDSFVTTLVKLPDLKVLRLVSLG---LWGPLSGKISRLSSLEILNMSSNFLNGAIP 148
L S ++F T + L D L+ + + L G S IS + L++LN+SSN G IP
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 149 XXXXXXXXXXXXXXDENMLAGRVPDWL-GSLPILAVLSLRNNMFNGTLPDSFSYLENLRV 207
EN G +PD+L G+ L L L N F G +P F L
Sbjct: 262 PLPLKSLQYLSLA--ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 208 LALSNNHFYGEVPDFSGLTY--LQVLDLENNALGPQFPK----VGKKLVTMILSKNKFRS 261
LALS+N+F GE+P + L L+VLDL N + P+ + L+T+ LS N F
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 262 AIPAEVSSYYQ--LQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNP 319
I + + LQ L L +N F G P L + + L+++ N L+G + L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 320 ELGFVDLSSNLLTGQLPNCLL 340
+L + L N+L G++P L+
Sbjct: 440 KLRDLKLWLNMLEGEIPQELM 460
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 109/290 (37%), Gaps = 50/290 (17%)
Query: 102 TLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXX 161
TL +L L L L G + + LS L L + N L G IP
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 162 XDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP- 220
D N L G +P L + L +SL NN G +P LENL +L LSNN F G +P
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 221 DFSGLTYLQVLDLENNALGPQFP-----KVGKKLVTMILSK------------------- 256
+ L LDL N P + GK I K
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 257 ------------NKFRSAIPAEVSSYY-------------QLQRLDLSSNRFVGPFPQAL 291
N+ + P ++S + LD+S N G P+ +
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 292 LSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLPNCLLA 341
S+P + LN+ N ++G + D++ L +DLSSN L G++P + A
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 55/249 (22%)
Query: 95 SMDSFVTTLVKLPDLKVLRLV-----SLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPX 149
S+ VTTL L L+ + +L G +SG + +L+SLE+L++S+N ++GA
Sbjct: 108 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--- 163
Query: 150 XXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLA 209
N++ + D G L LA+ N +G + S NL L
Sbjct: 164 ---------------NVVGWVLSDGCGELKHLAI---SGNKISGDV--DVSRCVNLEFLD 203
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSS 269
+S+N+F +P + LQ LD+ N L F + +S+
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA---------------------IST 242
Query: 270 YYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLS--CNPELGFVDLS 327
+L+ L++SSN+FVGP P L L S+ YL++A+NK TG++ D LS C+ G +DLS
Sbjct: 243 CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG-LDLS 299
Query: 328 SNLLTGQLP 336
N G +P
Sbjct: 300 GNHFYGAVP 308
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 55/296 (18%)
Query: 92 LSFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXX 151
LS ++ S + +L KL DLK+ + L G + ++ + +LE L + N L G IP
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 152 XXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALS 211
N L G +P W+G L LA+L L NN F+G +P +L L L+
Sbjct: 484 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 212 NNHFYGEVP---------------------------------------DFSGLTYLQV-- 230
N F G +P +F G+ Q+
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 231 ------LDLENNALG----PQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSS 280
++ + G P F G ++ + +S N IP E+ S L L+L
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 281 NRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLP 336
N G P + L + L+++ NKL G++ +S L +DLS+N L+G +P
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 132 SLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMF 191
S+ L+MS N L+G IP N ++G +PD +G L L +L L +N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 192 NGTLPDSFSYLENLRVLALSNNHFYGEVPDF 222
+G +P + S L L + LSNN+ G +P+
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 36/229 (15%)
Query: 105 KLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDE 164
+L +L +L+L + G + ++ SL L++++N NG IP
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA---- 564
Query: 165 NMLAGRVPDWL------------GSL--------PILAVLSLRN------NMFNGTLPDS 198
N +AG+ ++ G+L L LS RN ++ G +
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 199 FSYLENLRVLALSNNHFYGEVP-DFSGLTYLQVLDLENNALGPQFP-KVG--KKLVTMIL 254
F ++ L +S N G +P + + YL +L+L +N + P +VG + L + L
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 255 SKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQ--ALLSLPSITYLN 301
S NK IP +S+ L +DLS+N GP P+ + P +LN
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 60/184 (32%)
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNAL-GP-----------------------QFP-K 244
LSN+H G V F L LDL N+L GP FP K
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 245 V--------------------GKKLVTMILSK------------NKFRSAIPAEVSSYYQ 272
V G +V +LS NK + +VS
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 198
Query: 273 LQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLT 332
L+ LD+SSN F P L ++ +L+I+ NKL+G +S EL +++SSN
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 333 GQLP 336
G +P
Sbjct: 258 GPIP 261
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 37/284 (13%)
Query: 93 SFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLS-SLEILNMSSNFLNGAI--PX 149
+FS + + TL+K+ LKVL L G L ++ LS SL L++SSN +G I
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 150 XXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLA 209
N G++P L + L L L N +GT+P S L LR L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSS 269
L N GE+P L Y++ L+ T+IL N IP+ +S+
Sbjct: 449 LWLNMLEGEIP--QELMYVKTLE------------------TLILDFNDLTGEIPSGLSN 488
Query: 270 YYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSN 329
L + LS+NR G P+ + L ++ L +++N +G + +L L ++DL++N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 330 LLTGQLPNCLLAGS--------KNRVVLYARN------CLAAGN 359
L G +P + S + +Y +N C AGN
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 122/261 (46%), Gaps = 14/261 (5%)
Query: 92 LSFSMDSFVTTLVKLPDLKVLRLVSLG---LWGPLSGKISRLSSLEILNMSSNFLNGAIP 148
L S ++F T + L D L+ + + L G S IS + L++LN+SSN G IP
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 149 XXXXXXXXXXXXXXDENMLAGRVPDWL-GSLPILAVLSLRNNMFNGTLPDSFSYLENLRV 207
EN G +PD+L G+ L L L N F G +P F L
Sbjct: 265 PLPLKSLQYLSLA--ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 208 LALSNNHFYGEVPDFSGLTY--LQVLDLENNALGPQFPK----VGKKLVTMILSKNKFRS 261
LALS+N+F GE+P + L L+VLDL N + P+ + L+T+ LS N F
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 262 AIPAEVSSYYQ--LQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNP 319
I + + LQ L L +N F G P L + + L+++ N L+G + L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 320 ELGFVDLSSNLLTGQLPNCLL 340
+L + L N+L G++P L+
Sbjct: 443 KLRDLKLWLNMLEGEIPQELM 463
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 109/290 (37%), Gaps = 50/290 (17%)
Query: 102 TLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXX 161
TL +L L L L G + + LS L L + N L G IP
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 162 XDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP- 220
D N L G +P L + L +SL NN G +P LENL +L LSNN F G +P
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 221 DFSGLTYLQVLDLENNALGPQFP-----KVGKKLVTMILSK------------------- 256
+ L LDL N P + GK I K
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 257 ------------NKFRSAIPAEVSSYY-------------QLQRLDLSSNRFVGPFPQAL 291
N+ + P ++S + LD+S N G P+ +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 292 LSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLPNCLLA 341
S+P + LN+ N ++G + D++ L +DLSSN L G++P + A
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 55/249 (22%)
Query: 95 SMDSFVTTLVKLPDLKVLRLV-----SLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPX 149
S+ VTTL L L+ + +L G +SG + +L+SLE+L++S+N ++GA
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGA--- 166
Query: 150 XXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLA 209
N++ + D G L LA+ N +G + S NL L
Sbjct: 167 ---------------NVVGWVLSDGCGELKHLAI---SGNKISGDV--DVSRCVNLEFLD 206
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSS 269
+S+N+F +P + LQ LD+ N L F + +S+
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA---------------------IST 245
Query: 270 YYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLS--CNPELGFVDLS 327
+L+ L++SSN+FVGP P L L S+ YL++A+NK TG++ D LS C+ G +DLS
Sbjct: 246 CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG-LDLS 302
Query: 328 SNLLTGQLP 336
N G +P
Sbjct: 303 GNHFYGAVP 311
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 55/296 (18%)
Query: 92 LSFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXX 151
LS ++ S + +L KL DLK+ + L G + ++ + +LE L + N L G IP
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 152 XXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALS 211
N L G +P W+G L LA+L L NN F+G +P +L L L+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 212 NNHFYGEVP---------------------------------------DFSGLTYLQV-- 230
N F G +P +F G+ Q+
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 231 ------LDLENNALG----PQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSS 280
++ + G P F G ++ + +S N IP E+ S L L+L
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 281 NRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLP 336
N G P + L + L+++ NKL G++ +S L +DLS+N L+G +P
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 132 SLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMF 191
S+ L+MS N L+G IP N ++G +PD +G L L +L L +N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 192 NGTLPDSFSYLENLRVLALSNNHFYGEVPDF 222
+G +P + S L L + LSNN+ G +P+
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 36/229 (15%)
Query: 105 KLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDE 164
+L +L +L+L + G + ++ SL L++++N NG IP
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA---- 567
Query: 165 NMLAGRVPDWL----------GSLPILAVLSLRNNMFN----------------GTLPDS 198
N +AG+ ++ G+ +L +R+ N G +
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 199 FSYLENLRVLALSNNHFYGEVP-DFSGLTYLQVLDLENNALGPQFP-KVG--KKLVTMIL 254
F ++ L +S N G +P + + YL +L+L +N + P +VG + L + L
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 255 SKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQ--ALLSLPSITYLN 301
S NK IP +S+ L +DLS+N GP P+ + P +LN
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 60/184 (32%)
Query: 210 LSNNHFYGEVPDFSGLTYLQVLDLENNAL-GP-----------------------QFP-K 244
LSN+H G V F L LDL N+L GP FP K
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 245 V--------------------GKKLVTMILSK------------NKFRSAIPAEVSSYYQ 272
V G +V +LS NK + +VS
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 201
Query: 273 LQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLT 332
L+ LD+SSN F P L ++ +L+I+ NKL+G +S EL +++SSN
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 333 GQLP 336
G +P
Sbjct: 261 GPIP 264
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTR--NFMHHIELISKLRHRHLVSALGHC 542
+G GS G ++R +G+ VA++ L + H+ R F+ + ++ +LRH ++V +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 543 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTG 602
+ + ++ EY+ G+L + + A + L +R+S A VAKG+ +LH
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 603 IVPGVFSNNLKITDILLDQNLVAKISSYNL 632
P + NLK ++L+D+ K+ + L
Sbjct: 157 -NPPIVHRNLKSPNLLVDKKYTVKVCDFGL 185
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTR--NFMHHIELISKLRHRHLVSALGHC 542
+G GS G ++R +G+ VA++ L + H+ R F+ + ++ +LRH ++V +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 543 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTG 602
+ + ++ EY+ G+L + + A + L +R+S A VAKG+ +LH
Sbjct: 104 -------TQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR 156
Query: 603 IVPGVFSNNLKITDILLDQNLVAKISSYNL 632
P + +LK ++L+D+ K+ + L
Sbjct: 157 -NPPIVHRDLKSPNLLVDKKYTVKVCDFGL 185
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVIEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 70
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 71 -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 126
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 127 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 161
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQL------ 69
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 70 --YAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 124
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 125 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 159
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVMEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQL------ 67
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 68 --YAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 122
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 123 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 157
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVCEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQL------ 244
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 245 --YAVVSEEPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQL------ 244
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 245 --YAVVSEEPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQL------ 244
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 245 --YAVVSEEPIYIVGEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 299
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 300 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 334
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVTEYMSKGCLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 326
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 327 -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 382
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 383 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 417
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ K+RH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKIRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 78 -LYAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L +IL+ +NLV K++ + L L E+ E
Sbjct: 134 -NYVHRDLAAANILVGENLVCKVADFGLARLIEDNE 168
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + + +A G+ ++
Sbjct: 75 -LYAVVSEEPIYIVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQIASGMAYVERM-- 130
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 131 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 67
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I ++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 68 -LYAVVSEEPIXIVTEYMSKGSLLDFL-KGETGKYLRLPQLVDMAAQIASGMAYVERM-- 123
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 124 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 158
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQ------- 74
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + + +A G+ ++
Sbjct: 75 -LYAVVSEEPIYIVTEYMNKGSLLDFL-KGETGKYLRLPQLVDMSAQIASGMAYVERM-- 130
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 131 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE 165
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++ G T VAI+ LK S F+ +++ KLRH LV
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPGNM-SPEAFLQEAQVMKKLRHEKLVQL------ 245
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G + L Q + A +A G+ ++
Sbjct: 246 --YAVVSEEPIYIVTEYMSKGSLLDFL-KGEMGKYLRLPQLVDMAAQIASGMAYVERM-- 300
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ +NLV K++ + L L E+ E
Sbjct: 301 -NYVHRDLRAANILVGENLVCKVADFGLGRLIEDNE 335
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLARVLEDDPEAAY 205
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGFVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLGRVLEDDPEAAY 205
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R KN F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF DS +R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDS--TRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKKVIHRDIKPENLLLGSAGELKIADF 152
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RT+ ++ E E N +G G G++ GRLK
Sbjct: 10 GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 69
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 70 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 122
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 123 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 177
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 178 INSNLVCKVSDFGLSRVLEDDPEAAY 203
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RT+ ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RT+ ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTYVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EY+ NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEYMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VAI+ LK S +F+ +++ KL+H LV
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQ------- 68
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ S I+++ EY+ G+L ++ +G ++L + A VA G+ ++
Sbjct: 69 -LYAVVSEEPIYIVTEYMNKGSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIERM-- 124
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L+ KI+ + L L E+ E
Sbjct: 125 -NYIHRDLRSANILVGNGLICKIADFGLARLIEDNE 159
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 13/134 (9%)
Query: 500 NGTFVAIRCLKMKKCHSTRN-FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
G VA++ LK R+ + I+++ L H H++ G C +D+ + + L+
Sbjct: 59 TGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDAGAASLQLV 113
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EYVP G+LR ++ S+ Q + A + +G+ +LH +L ++L
Sbjct: 114 MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHA---QHYIHRDLAARNVL 166
Query: 619 LDQNLVAKISSYNL 632
LD + + KI + L
Sbjct: 167 LDNDRLVKIGDFGL 180
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 485 MGEGSQGQMYRGRLKN------GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+GEG+ G+++ N VA++ LK ++ ++F EL++ L+H H+V
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI----------SEGHAHQSLTWTQRISA 588
G C E + ++FEY+ +G L ++ +EG+ LT +Q +
Sbjct: 81 YGVCVEG-------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHI 133
Query: 589 AIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
A +A G+ +L + +L + L+ +NL+ KI + +
Sbjct: 134 AQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKIGDFGM 174
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 10/146 (6%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKK--CHSTRNFMHHIELISKLRHRHLVSALGHC 542
+ E G++++GR + G + ++ LK++ +R+F + H +++ LG C
Sbjct: 18 LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 543 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTG 602
LI ++P G+L + + EG + + +Q + A+ +A+G+ FLHT
Sbjct: 77 -----QSPPAPHPTLITHWMPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARGMAFLHT- 129
Query: 603 IVPGVFSNNLKITDILLDQNLVAKIS 628
+ P + + L +++D+++ A+IS
Sbjct: 130 LEPLIPRHALNSRSVMIDEDMTARIS 155
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 473 EEATNNFDTSAFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELI 527
E N +G G G++ GRLK VAI+ LK+ R +F+ ++
Sbjct: 12 ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRIS 587
+ H +++ G + + ++ EY+ NG+L S++ + A T Q +
Sbjct: 72 GQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRKHDAQ--FTVIQLVG 122
Query: 588 AAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
G+A G+++L G +L +IL++ NLV K+S + L + E+ + +
Sbjct: 123 MLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 176
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 461 LPAYRTFSLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKC 514
+P T ++ E E N +G G G++ GRLK VAI+ LK+
Sbjct: 15 VPRGSTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 74
Query: 515 HSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISE 573
R +F+ ++ + H +++ G + + ++ EY+ NG+L S++ +
Sbjct: 75 EKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIVTEYMENGSLDSFLRK 127
Query: 574 GHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
A T Q + G+A G+++L G +L +IL++ NLV K+S + L
Sbjct: 128 HDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLS 182
Query: 634 LLAENAEKVGH 644
+ E+ + +
Sbjct: 183 RVLEDDPEAAY 193
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHST----RNFMHHIELISKLRH 532
N+ +GEG+ GQ+ + R+K +K K +++ R+F +E++ KL H
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 533 R-HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ------------- 578
++++ LG C ++L EY P+G L ++ + +
Sbjct: 82 HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 134
Query: 579 SLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L+ Q + A VA+G+ +L NL +IL+ +N VAKI+ + L
Sbjct: 135 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRNLAARNILVGENYVAKIADFGL 185
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RTF ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
E + NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEXMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGAVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 500 NGTFVAIRCLKMKKCHSTRN-FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
G VA++ LK R+ + I+++ L H H++ G C +D + L+
Sbjct: 42 TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EYVP G+LR ++ S+ Q + A + +G+ +LH+ NL ++L
Sbjct: 97 MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHS---QHYIHRNLAARNVL 149
Query: 619 LDQNLVAKISSYNL 632
LD + + KI + L
Sbjct: 150 LDNDRLVKIGDFGL 163
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 92 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 92 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 144
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 145 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 178
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 78 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 128
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+AE
Sbjct: 129 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAE 163
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 500 NGTFVAIRCLKMKKCHSTRN-FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
G VA++ LK R+ + I+++ L H H++ G C +D + L+
Sbjct: 42 TGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC-----EDQGEKSLQLV 96
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EYVP G+LR ++ S+ Q + A + +G+ +LH NL ++L
Sbjct: 97 MEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHA---QHYIHRNLAARNVL 149
Query: 619 LDQNLVAKISSYNL 632
LD + + KI + L
Sbjct: 150 LDNDRLVKIGDFGL 163
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 83 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 135
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 136 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 169
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 68 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 121 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 154
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 67 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 67 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHST----RNFMHHIELISKLRH 532
N+ +GEG+ GQ+ + R+K +K K +++ R+F +E++ KL H
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 533 R-HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ------------- 578
++++ LG C ++L EY P+G L ++ + +
Sbjct: 85 HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 137
Query: 579 SLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L+ Q + A VA+G+ +L +L +IL+ +N VAKI+ + L
Sbjct: 138 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 188
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 71 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHST----RNFMHHIELISKLRH 532
N+ +GEG+ GQ+ + R+K +K K +++ R+F +E++ KL H
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 533 R-HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ------------- 578
++++ LG C ++L EY P+G L ++ + +
Sbjct: 75 HPNIINLLGAC-------EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS 127
Query: 579 SLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L+ Q + A VA+G+ +L +L +IL+ +N VAKI+ + L
Sbjct: 128 TLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGL 178
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 457 GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMK 512
GA+G + R ++LE +F+ +G+G G +Y R K F+ A++ L +++
Sbjct: 1 GAMG--SKRQWALE-------DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLE 51
Query: 513 KCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---S 569
K +E+ S LRH +++ G YF D++ R++LI EY P GT+
Sbjct: 52 KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 570 WISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
+S+ ++ T+ ++ A+ + +H I P + LKI D
Sbjct: 105 KLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 156
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 67 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 119
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 120 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 65 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 117
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 118 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 151
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 122 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 71 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 71 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 123
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---ISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P G + +S+ ++ T+ ++
Sbjct: 71 RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 66 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 118
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 119 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW---ISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P G + +S+ ++ T+ ++
Sbjct: 71 RHPNILRLYG-----YFHDAT--RVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELA 123
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 124 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 457 GALGLPAYRTF-----------SLEEL--EEATNNFDTSAFMGEGSQGQMYRGRLK---- 499
G L LP RT+ ++ E E N +G G G++ GRLK
Sbjct: 12 GHLKLPGLRTYVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSK 71
Query: 500 NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
VAI+ LK+ R +F+ ++ + H +++ G + + ++
Sbjct: 72 KEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV-------TKSKPVMIV 124
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
E + NG+L S++ + A T Q + G+A G+++L G +L +IL
Sbjct: 125 TEXMENGSLDSFLRKHDAQ--FTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNIL 179
Query: 619 LDQNLVAKISSYNLPLLAENAEKVGH 644
++ NLV K+S + L + E+ + +
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAY 205
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 69 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 121
Query: 588 AAIGVAKGIQFLHTGIVP 605
A+ + +H I P
Sbjct: 122 NALSYCHSKRVIHRDIKP 139
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 68 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 120
Query: 588 AAIGVAKGIQFLHTGIVP 605
A+ + +H I P
Sbjct: 121 NALSYCHSKRVIHRDIKP 138
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKL 530
A +F+ +G+G G +Y R K F+ A++ L +++K +E+ S L
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---SWISEGHAHQSLTWTQRIS 587
RH +++ G YF D++ R++LI EY P GT+ +S+ ++ T+ ++
Sbjct: 63 RHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELA 115
Query: 588 AAIGVAKGIQFLHTGIVPGVF----SNNLKITDI 617
A+ + +H I P + LKI D
Sbjct: 116 NALSYCHSKRVIHRDIKPENLLLGSAGELKIADF 149
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRL------ 69
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ + I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 70 --YAVVTQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 124
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
NL+ +IL+ L KI+ + L L E+ E
Sbjct: 125 -NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNE 159
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 485 MGEGSQGQMYRGRLKNGTF-----VAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSA 538
+G G G++Y+G LK + VAI+ LK R +F+ ++ + H +++
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQF 598
G S + +I EY+ NG L ++ E S+ Q + G+A G+++
Sbjct: 112 EGVI-------SKYKPMMIITEYMENGALDKFLREKDGEFSVL--QLVGMLRGIAAGMKY 162
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 638
L +L +IL++ NLV K+S + L + E+
Sbjct: 163 LAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 32/193 (16%)
Query: 457 GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMK 512
G LG + R ++LE +FD +G+G G +Y R + F+ A++ L +++
Sbjct: 1 GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 513 KCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---S 569
K +E+ S LRH +++ G YF D++ R++LI EY P GT+
Sbjct: 52 KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 570 WISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS 629
+S ++ T+ ++ A+ + +H I P ++LL N KI+
Sbjct: 105 KLSRFDEQRTATYITELANALSYCHSKRVIHRDIKP---------ENLLLGSNGELKIAD 155
Query: 630 YNLPLLAENAEKV 642
+ + A ++ +
Sbjct: 156 FGWSVHAPSSRRT 168
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 32/192 (16%)
Query: 457 GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMK 512
G LG + R ++LE +FD +G+G G +Y R + F+ A++ L +++
Sbjct: 1 GPLG--SKRQWTLE-------DFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLE 51
Query: 513 KCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLR---S 569
K +E+ S LRH +++ G YF D++ R++LI EY P GT+
Sbjct: 52 KAGVEHQLRREVEIQSHLRHPNILRLYG-----YFHDAT--RVYLILEYAPLGTVYRELQ 104
Query: 570 WISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISS 629
+S ++ T+ ++ A+ + +H I P ++LL N KI+
Sbjct: 105 KLSRFDEQRTATYITELANALSYCHSKRVIHRDIKP---------ENLLLGSNGELKIAD 155
Query: 630 YNLPLLAENAEK 641
+ + A ++ +
Sbjct: 156 FGWSVHAPSSRR 167
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 473 EEATNNFDTSAFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELI 527
E N +G G G++ GRLK VAI+ LK+ R +F+ ++
Sbjct: 12 ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 71
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRIS 587
+ H +++ G + + ++ E + NG+L S++ + A T Q +
Sbjct: 72 GQFDHPNIIRLEGVV-------TKSKPVMIVTEXMENGSLDSFLRKHDAQ--FTVIQLVG 122
Query: 588 AAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
G+A G+++L G +L +IL++ NLV K+S + L + E+ + +
Sbjct: 123 MLRGIASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 176
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + HA + + + + + KG+++L T +L +IL++
Sbjct: 97 YLPYGSLRDYL-QAHA-ERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 152 NENRVKIGDFGL 163
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKK--CHSTRNFMHHIELISKLRHRHLVSALGHC 542
+ E G++++GR + G + ++ LK++ +R+F + H +++ LG C
Sbjct: 18 LNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGAC 76
Query: 543 FECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTG 602
LI + P G+L + + EG + + +Q + A+ A+G FLHT
Sbjct: 77 -----QSPPAPHPTLITHWXPYGSLYNVLHEG-TNFVVDQSQAVKFALDXARGXAFLHT- 129
Query: 603 IVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ P + + L + +D++ A+IS ++
Sbjct: 130 LEPLIPRHALNSRSVXIDEDXTARISXADV 159
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 26/186 (13%)
Query: 467 FSLEELEEATNNF----DTSAF-----MGEGSQGQMYRGRLK----NGTFVAIRCLKMKK 513
F+ E+ EA F D S +G G G++ G LK FVAI+ LK
Sbjct: 14 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 73
Query: 514 CHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 572
R +F+ ++ + H +++ G + + + +I E++ NG+L S++
Sbjct: 74 TEKQRRDFLSEASIMGQFDHPNVIHLEGVV-------TKSTPVMIITEFMENGSLDSFLR 126
Query: 573 EGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ T Q + G+A G+++L +L +IL++ NLV K+S + L
Sbjct: 127 QNDGQ--FTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGL 181
Query: 633 PLLAEN 638
E+
Sbjct: 182 SRFLED 187
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 40 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 94
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T NL +IL++
Sbjct: 95 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRNLATRNILVE 149
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 150 NENRVKIGDFGL 161
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 500 NGTFVAIRCLKMKKCHSTRN-FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
G VA++ LK R+ + IE++ L H H+V G C +D + L+
Sbjct: 36 TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 90
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EYVP G+LR ++ + Q + A + +G+ +LH L ++L
Sbjct: 91 MEYVPLGSLRDYLPR----HCVGLAQLLLFAQQICEGMAYLH---AQHYIHRALAARNVL 143
Query: 619 LDQNLVAKISSYNL 632
LD + + KI + L
Sbjct: 144 LDNDRLVKIGDFGL 157
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 500 NGTFVAIRCLKMKKCHSTRN-FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLI 558
G VA++ LK R+ + IE++ L H H+V G C +D + L+
Sbjct: 37 TGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCC-----EDQGEKSVQLV 91
Query: 559 FEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDIL 618
EYVP G+LR ++ + Q + A + +G+ +LH L ++L
Sbjct: 92 MEYVPLGSLRDYLPR----HCVGLAQLLLFAQQICEGMAYLH---AQHYIHRALAARNVL 144
Query: 619 LDQNLVAKISSYNL 632
LD + + KI + L
Sbjct: 145 LDNDRLVKIGDFGL 158
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 467 FSLEELEEATNNF----DTSAF-----MGEGSQGQMYRGRLK----NGTFVAIRCLKMKK 513
F+ E+ +A F D S +G G G++ GRLK VAI+ LK
Sbjct: 10 FTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGY 69
Query: 514 CHSTR-NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS 572
R +F+ ++ + H +++ G +C + +I EY+ NG+L +++
Sbjct: 70 TDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKC-------KPVMIITEYMENGSLDAFLR 122
Query: 573 EGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ T Q + G+ G+++L +L +IL++ NLV K+S + +
Sbjct: 123 KNDGR--FTVIQLVGMLRGIGSGMKYLSD---MSAVHRDLAARNILVNSNLVCKVSDFGM 177
Query: 633 PLLAENAEKVGH 644
+ E+ + +
Sbjct: 178 SRVLEDDPEAAY 189
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 73 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 123
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 124 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 158
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 86
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 87 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 137
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 138 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 172
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 83
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 84 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 134
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 135 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 169
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 79
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 80 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 130
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 131 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 165
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 78 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 128
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 129 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G N T VA++ LK S + F+ L+ L+H LV
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
Y + I++I EY+ G+L ++ + L + I + +A+G+ ++
Sbjct: 73 LYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL-PKLIDFSAQIAEGMAYIER--- 128
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ ++L+ ++L+ KI+ + L + E+ E
Sbjct: 129 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 164
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 83
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 84 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 134
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 135 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 169
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 82
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 83 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 133
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 134 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 168
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 85
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 86 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 136
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 137 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 171
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 78 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 128
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 129 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 78
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 79 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 129
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 130 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 164
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 77
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 78 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 128
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 129 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 163
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G T VA++ LK + S F+ L+ +L+H+ LV
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVV-- 87
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
+ I++I EY+ NG+L ++ + LT + + A +A+G+ F+
Sbjct: 88 ------TQEPIYIITEYMENGSLVDFLKTPSGIK-LTINKLLDMAAQIAEGMAFIEER-- 138
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ +IL+ L KI+ + L L E+ E
Sbjct: 139 -NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE 173
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSAL 539
+G G G++ GRLK VAI+ LK+ R +F+ ++ + H ++V
Sbjct: 51 IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLE 110
Query: 540 GHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGI 596
G V+R + ++ E++ NG L +++ + H Q T Q + G+A G+
Sbjct: 111 G----------VVTRGKPVMIVIEFMENGALDAFLRK-HDGQ-FTVIQLVGMLRGIAAGM 158
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 638
++L G +L +IL++ NLV K+S + L + E+
Sbjct: 159 RYLAD---MGYVHRDLAARNILVNSNLVCKVSDFGLSRVIED 197
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKLRH 532
++FD +G+G G +Y R K F+ A++ L +++K IE+ S LRH
Sbjct: 15 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG---HAHQSLTWTQRISAA 589
+++ YF D RI+L+ E+ P G L + + +S T+ + ++ A
Sbjct: 75 PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 127
Query: 590 IGVAKGIQFLHTGIVPG----VFSNNLKITDI 617
+ + +H I P + LKI D
Sbjct: 128 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 159
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 70 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 124
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 125 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 179
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 180 NENRVKIGDFGL 191
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKLRH 532
++FD +G+G G +Y R K F+ A++ L +++K IE+ S LRH
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG---HAHQSLTWTQRISAA 589
+++ YF D RI+L+ E+ P G L + + +S T+ + ++ A
Sbjct: 74 PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 126
Query: 590 IGVAKGIQFLHTGIVPG----VFSNNLKITDI 617
+ + +H I P + LKI D
Sbjct: 127 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 158
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 97 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 152 NENRVKIGDFGL 163
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 45 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 99
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 100 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 154
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 155 NENRVKIGDFGL 166
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 46 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 100
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 101 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 155
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 156 NENRVKIGDFGL 167
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 43 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 97
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 98 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 152
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 153 NENRVKIGDFGL 164
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 44 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 98
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 99 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 153
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 154 NENRVKIGDFGL 165
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G+++ G N T VA++ LK S + F+ L+ L+H LV
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLV-------R 71
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIV 604
Y + I++I E++ G+L ++ + L + I + +A+G+ ++
Sbjct: 72 LYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLL-PKLIDFSAQIAEGMAYIER--- 127
Query: 605 PGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+L+ ++L+ ++L+ KI+ + L + E+ E
Sbjct: 128 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 163
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 94 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 149 NENRVKIGDFGL 160
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 37 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 91
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 92 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 146
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 147 NENRVKIGDFGL 158
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 94 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 149 NENRVKIGDFGL 160
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 57 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 112 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 166
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 167 NENRVKIGDFGL 178
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 38 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 92
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 93 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 147
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 148 NENRVKIGDFGL 159
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 57 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 111
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 112 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 166
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 167 NENRVKIGDFGL 178
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 39 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 93
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
Y+P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 94 YLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 148
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 149 NENRVKIGDFGL 160
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSAL 539
+G G G++ GRLK VAI+ LK+ R +F+ ++ + H +++
Sbjct: 30 IGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLE 89
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G + + ++ EY+ NG+L +++ + T Q + G++ G+++L
Sbjct: 90 GVV-------TKSKPVMIVTEYMENGSLDTFLKKNDGQ--FTVIQLVGMLRGISAGMKYL 140
Query: 600 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
G +L +IL++ NLV K+S + L + E+ + +
Sbjct: 141 SDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAY 182
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCL---KMKKCHSTRNFMHHIELISKLRH 532
++FD +G+G G +Y R K F+ A++ L +++K IE+ S LRH
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG---HAHQSLTWTQRISAA 589
+++ YF D RI+L+ E+ P G L + + +S T+ + ++ A
Sbjct: 74 PNILRMYN-----YFHDR--KRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADA 126
Query: 590 IGVAKGIQFLHTGIVPG----VFSNNLKITDI 617
+ + +H I P + LKI D
Sbjct: 127 LHYCHERKVIHRDIKPENLLMGYKGELKIADF 158
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 485 MGEGSQGQMYRGRLKN------GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+GEG+ G+++ N VA++ LK + ++F EL++ L+H+H+V
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAHQSLTWTQRI 586
G C E + ++FEY+ +G L ++ E A L Q +
Sbjct: 109 FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 161
Query: 587 SAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ A VA G+ +L G+ +L + L+ Q LV KI + +
Sbjct: 162 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 204
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 485 MGEGSQGQMYRGRLKN------GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+GEG+ G+++ N VA++ LK + ++F EL++ L+H+H+V
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAHQSLTWTQRI 586
G C E + ++FEY+ +G L ++ E A L Q +
Sbjct: 80 FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 132
Query: 587 SAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ A VA G+ +L G+ +L + L+ Q LV KI + +
Sbjct: 133 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 175
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 485 MGEGSQGQMYRGRLKN------GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+GEG+ G+++ N VA++ LK + ++F EL++ L+H+H+V
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------------SEGHAHQSLTWTQRI 586
G C E + ++FEY+ +G L ++ E A L Q +
Sbjct: 86 FGVCTEG-------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLL 138
Query: 587 SAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ A VA G+ +L G+ +L + L+ Q LV KI + +
Sbjct: 139 AVASQVAAGMVYL-AGL--HFVHRDLATRNCLVGQGLVVKIGDFGM 181
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 463 AYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCH-ST 517
A R+F+ E+E + +G G G++ GRL+ VAI+ LK
Sbjct: 38 AGRSFT-REIE--ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 518 RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISEG 574
R+F+ ++ + H +++ G V+R ++ EY+ NG+L +++
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEG----------VVTRGRLAMIVTEYMENGSLDTFLRT- 143
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
H Q T Q + GV G+++L G +L ++L+D NLV K+S + L
Sbjct: 144 HDGQ-FTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 635 LAEN 638
+ E+
Sbjct: 200 VLED 203
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 463 AYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCH-ST 517
A R+F+ E+E + +G G G++ GRL+ VAI+ LK
Sbjct: 38 AGRSFT-REIE--ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQR 94
Query: 518 RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSR---IFLIFEYVPNGTLRSWISEG 574
R+F+ ++ + H +++ G V+R ++ EY+ NG+L +++
Sbjct: 95 RDFLSEASIMGQFDHPNIIRLEG----------VVTRGRLAMIVTEYMENGSLDTFLRT- 143
Query: 575 HAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
H Q T Q + GV G+++L G +L ++L+D NLV K+S + L
Sbjct: 144 HDGQ-FTIMQLVGMLRGVGAGMRYLSD---LGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 635 LAEN 638
+ E+
Sbjct: 200 VLED 203
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSAL 539
+G G G++ GRLK VAI+ LK R +F+ ++ + H +++
Sbjct: 22 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 81
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G +C + +I EY+ NG+L +++ + T Q + G+ G+++L
Sbjct: 82 GVVTKC-------KPVMIITEYMENGSLDAFLRKNDGR--FTVIQLVGMLRGIGSGMKYL 132
Query: 600 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
+L +IL++ NLV K+S + + + E+ + +
Sbjct: 133 SD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAY 174
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSAL 539
+G G G++ GRLK VAI+ LK R +F+ ++ + H +++
Sbjct: 16 IGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLE 75
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G +C + +I EY+ NG+L +++ + T Q + G+ G+++L
Sbjct: 76 GVVTKC-------KPVMIITEYMENGSLDAFLRKNDGR--FTVIQLVGMLRGIGSGMKYL 126
Query: 600 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
+L +IL++ NLV K+S + + + E+ + +
Sbjct: 127 SD---MSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAY 168
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 501 GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFE 560
G VA++ L+ R+F IE++ L+H ++V G C+ + + LI E
Sbjct: 42 GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCY-----SAGRRNLKLIME 96
Query: 561 YVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLD 620
++P G+LR ++ + + + + + + KG+++L T +L +IL++
Sbjct: 97 FLPYGSLREYLQK--HKERIDHIKLLQYTSQICKGMEYLGT---KRYIHRDLATRNILVE 151
Query: 621 QNLVAKISSYNL 632
KI + L
Sbjct: 152 NENRVKIGDFGL 163
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ +K + S +F+ E++ KL H LV G C E
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+FE++ +G L ++ TQR + + V +G+
Sbjct: 94 -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 136
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 137 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 169
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ ++ + S +F+ E++ KL H LV G C E
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+FE++ +G L ++ TQR + + V +G+
Sbjct: 72 -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 114
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 115 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 147
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 485 MGEGSQGQMYRGRL------KNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+GEG+ G+++ K+ VA++ LK + ++F EL++ L+H H+V
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWIS----------EGHAHQS---LTWTQR 585
G C + ++FEY+ +G L ++ +G Q+ L +Q
Sbjct: 83 YGVC-------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM 135
Query: 586 ISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ A +A G+ +L + +L + L+ NL+ KI + +
Sbjct: 136 LHIASQIASGMVYLAS---QHFVHRDLATRNCLVGANLLVKIGDFGM 179
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ ++ + S +F+ E++ KL H LV G C E
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+FE++ +G L ++ TQR + + V +G+
Sbjct: 74 -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 116
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 117 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 149
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 23/183 (12%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIEL 526
S+++ E + +G G G++Y G K + VA++ LK + F+ +
Sbjct: 23 SMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 81
Query: 527 ISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LT 581
+ +++H +LV LG C + +++ EY+P G L ++ E + + L
Sbjct: 82 MKEIKHPNLVQLLGVC-------TLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLY 134
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+IS+A+ + F+H +L + L+ +N V K++ + L L
Sbjct: 135 MATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHVVKVADFGLSRLMTGDTY 185
Query: 642 VGH 644
H
Sbjct: 186 TAH 188
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ ++ + S +F+ E++ KL H LV G C E
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+FE++ +G L ++ TQR + + V +G+
Sbjct: 74 -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 116
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 117 AYLEEA---SVIHRDLAARNCLVGENQVIKVSDFGM 149
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 89 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIP 647
+L + L++ V K+S + L L E VG P
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFP 184
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ K VA++ +K + S F + + KL H LV G C
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIK-EGSMSEDEFFQEAQTMMKLSHPKLVKFYGVC-- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWI-SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGI 603
S I+++ EY+ NG L +++ S G + L +Q + V +G+ FL +
Sbjct: 73 -----SKEYPIYIVTEYISNGCLLNYLRSHG---KGLEPSQLLEMCYDVCEGMAFLESH- 123
Query: 604 VPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L + L+D++L K+S + +
Sbjct: 124 --QFIHRDLAARNCLVDRDLCVKVSDFGM 150
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCH-STRNFMHHIELISKLRHRHLVSAL 539
+G G G++ RGRLK + VAI+ LK R F+ ++ + H +++
Sbjct: 22 IGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLE 81
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G ++ + ++ E++ NG L S++ T Q + G+A G+++L
Sbjct: 82 GVV-------TNSMPVMILTEFMENGALDSFLRLNDGQ--FTVIQLVGMLRGIASGMRYL 132
Query: 600 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAENAEKVGHVIPYSGSI 652
+L +IL++ NLV K+S + L L EN+ + G I
Sbjct: 133 AEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKI 183
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 485 MGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCHSTR-NFMHHIELISKLRHRHLVSAL 539
+G G G++ G LK FVAI+ LK R +F+ ++ + H +++
Sbjct: 15 IGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE 74
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G + + + +I E++ NG+L S++ + T Q + G+A G+++L
Sbjct: 75 GVV-------TKSTPVMIITEFMENGSLDSFLRQNDGQ--FTVIQLVGMLRGIAAGMKYL 125
Query: 600 HTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAEN 638
L +IL++ NLV K+S + L E+
Sbjct: 126 ADM---NYVHRALAARNILVNSNLVCKVSDFGLSRFLED 161
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ ++ + S +F+ E++ KL H LV G C E
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+FE++ +G L ++ TQR + + V +G+
Sbjct: 77 -------QAPICLVFEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 119
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 120 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 152
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 470 EELEEATNNFDTS-----AFMGEGSQGQMYRGRLK----NGTFVAIRCLKMKKCH-STRN 519
E + E D S +G G G++ RGRLK + VAI+ LK R
Sbjct: 4 EAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE 63
Query: 520 FMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS 579
F+ ++ + H +++ G ++ + ++ E++ NG L S++
Sbjct: 64 FLSEASIMGQFEHPNIIRLEGVV-------TNSMPVMILTEFMENGALDSFLRLNDGQ-- 114
Query: 580 LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP-LLAEN 638
T Q + G+A G+++L +L +IL++ NLV K+S + L L EN
Sbjct: 115 FTVIQLVGMLRGIASGMRYLAEM---SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 171
Query: 639 A 639
+
Sbjct: 172 S 172
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 88
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 89 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 143
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIP 647
+L + L++ V K+S + L L E VG P
Sbjct: 144 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 184
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKN-GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHL 535
+F+ +G+GS G+++ K F AI+ LK M + + R L
Sbjct: 18 EDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-----LMDDDVECTMVEKRVL 72
Query: 536 VSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
A H F C F + +F + EY+ G L I H ++ A
Sbjct: 73 SLAWEHPFLTHMFCTF--QTKENLFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAE 127
Query: 592 VAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+QFLH+ G+ +LK+ +ILLD++ KI+ + +
Sbjct: 128 IILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 165
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 68
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 69 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 123
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIPYSGS 651
+L + L++ V K+S + L L E VG P S
Sbjct: 124 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWS 168
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 79
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 80 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 134
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIP 647
+L + L++ V K+S + L L E VG P
Sbjct: 135 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 175
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 74 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIP 647
+L + L++ V K+S + L L E VG P
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 169
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 73 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 127
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLP---LLAENAEKVGHVIP 647
+L + L++ V K+S + L L E VG P
Sbjct: 128 ---------RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 168
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLKN-GTFVAIRCLKMK---KCHSTRNFMHHIELISKL 530
+NF+ +G+GS G++ R+K G A++ LK + M ++S
Sbjct: 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLA 80
Query: 531 RHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAI 590
R+ ++ L CF+ + R+F + E+V G L I + R AA
Sbjct: 81 RNHPFLTQLFCCFQ------TPDRLFFVMEFVNGGDLMFHIQKSRRFDEAR--ARFYAA- 131
Query: 591 GVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ + FLH G+ +LK+ ++LLD K++ + +
Sbjct: 132 EIISALMFLHD---KGIIYRDLKLDNVLLDHEGHCKLADFGM 170
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 485 MGEGSQGQMYR-GRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G+G GQ + + G + ++ L + R F+ ++++ L H +++ +G +
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGI 603
+ R+ I EY+ GTLR I W+QR+S A +A G+ +LH+
Sbjct: 78 K-------DKRLNFITEYIKGGTLRGIIKS--MDSQYPWSQRVSFAKDIASGMAYLHSM- 127
Query: 604 VPGVFSNNLKITDILLDQNLVAKISSYNLPLL 635
+ +L + L+ +N ++ + L L
Sbjct: 128 --NIIHRDLNSHNCLVRENKNVVVADFGLARL 157
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 471 ELEEATNNFDTSAFMGEGSQGQMYRGRLKN-GTFVAIRCLKM-----KKCHSTRNFMHHI 524
+++ ++ F+GEG +Y+ R KN VAI+ +K+ K R + I
Sbjct: 4 DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 525 ELISKLRHRHLV---SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLT 581
+L+ +L H +++ A GH S I L+F+++ L I + LT
Sbjct: 64 KLLQELSHPNIIGLLDAFGH----------KSNISLVFDFM-ETDLEVIIKDNSL--VLT 110
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ + + +G+++LH + +LK ++LLD+N V K++ + L
Sbjct: 111 PSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGL 158
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G + G+ + VAI+ +K + S F+ +++ L H LV G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC-- 73
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEG----HAHQSLTWTQRISAAIGVAKGIQFLH 600
+ IF+I EY+ NG L +++ E Q L + + A+ + QFLH
Sbjct: 74 -----TKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 128
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L + L++ V K+S + L
Sbjct: 129 ---------RDLAARNCLVNDQGVVKVSDFGL 151
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCL---KMKKCHSTRNFMHHIELISKLRH 532
++F+ +G+G G +Y R K F VA++ L +++K IE+ + L H
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG---HAHQSLTWTQRISAA 589
+++ YF D RI+LI EY P G L + + ++ T + ++ A
Sbjct: 83 PNILRLYN-----YFYDRR--RIYLILEYAPRGELYKELQKSCTFDEQRTATIMEELADA 135
Query: 590 IGVAKGIQFLHTGIVP 605
+ G + +H I P
Sbjct: 136 LMYCHGKKVIHRDIKP 151
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIEL 526
SL++ E + +G G G++Y G K + VA++ LK + F+ +
Sbjct: 2 SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 60
Query: 527 ISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LT 581
+ +++H +LV LG C + ++I E++ G L ++ E + + L
Sbjct: 61 MKEIKHPNLVQLLGVC-------TREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLY 113
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+IS+A+ + F+H +L + L+ +N + K++ + L L
Sbjct: 114 MATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTX 164
Query: 642 VGHV 645
H
Sbjct: 165 TAHA 168
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 485 MGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS---TRNFMHHIELISKLRHRHLVSALG 540
+G G+ G++ G+ + G VA++ L +K S I+ + RH H++
Sbjct: 24 LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHII---- 79
Query: 541 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLH 600
+ Y S+ S IF++ EYV G L +I + ++R+ I G+ + H
Sbjct: 80 ---KLYQVISTPSDIFMVMEYVSGGELFDYICKN-GRLDEKESRRLFQQI--LSGVDYCH 133
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+ V +LK ++LLD ++ AKI+ + L + + E
Sbjct: 134 RHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 18/161 (11%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKN-GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHL 535
+F +G+GS G+++ K F AI+ LK M + + R L
Sbjct: 17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-----LMDDDVECTMVEKRVL 71
Query: 536 VSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
A H F C F + +F + EY+ G L I H ++ A
Sbjct: 72 SLAWEHPFLTHMFCTF--QTKENLFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAE 126
Query: 592 VAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+QFLH+ G+ +LK+ +ILLD++ KI+ + +
Sbjct: 127 IILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM 164
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 485 MGEGSQGQMYRGRLK-----NGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRHRHLVSA 538
+GEG G++ R G VA++ LK + + + IE++ L H ++V
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQF 598
G C E + I LI E++P+G+L+ ++ + + Q++ A+ + KG+ +
Sbjct: 89 KGICTE-----DGGNGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGMDY 141
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
L + +L ++L++ KI + L
Sbjct: 142 LGSR---QYVHRDLAARNVLVESEHQVKIGDFGL 172
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 458 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRG---RLKNG---TFVAIRCLKM 511
+L + A++ + E N +GEG G++ + LK T VA++ LK
Sbjct: 4 SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 512 KKCHST-RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 570
S R+ + ++ ++ H H++ G C S + LI EY G+LR +
Sbjct: 64 NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 571 ISEGHA---------------------HQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFS 609
+ E ++LT IS A +++G+Q+L +
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---SLVH 173
Query: 610 NNLKITDILLDQNLVAKISSYNL 632
+L +IL+ + KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G G G ++ G N VAI+ ++ + S +F+ E++ KL H LV G C E
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQR--------ISAAIGVAKGI 596
+ I L+ E++ +G L ++ TQR + + V +G+
Sbjct: 75 -------QAPICLVTEFMEHGCLSDYLR----------TQRGLFAAETLLGMCLDVCEGM 117
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L V +L + L+ +N V K+S + +
Sbjct: 118 AYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGM 150
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 28/191 (14%)
Query: 460 GLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTR 518
G P Y + +E + +G G G++Y G K + VA++ LK +
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 54
Query: 519 NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ 578
F+ ++ +++H +LV LG C + ++I E++ G L ++ E + +
Sbjct: 55 EFLKEAAVMKEIKHPNLVQLLGVC-------TREPPFYIIIEFMTYGNLLDYLRECNRQE 107
Query: 579 S-----LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
L +IS+A+ + F+H +L + L+ +N + K++ + L
Sbjct: 108 VSAVVLLYMATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLS 158
Query: 634 LLAENAEKVGH 644
L H
Sbjct: 159 RLMTGDTYTAH 169
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 485 MGEGSQGQMYRGRLK-----NGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRHRHLVSA 538
+GEG G++ R G VA++ LK + + + IE++ L H ++V
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQF 598
G C E + I LI E++P+G+L+ ++ + + Q++ A+ + KG+ +
Sbjct: 77 KGICTE-----DGGNGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICKGMDY 129
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
L + +L ++L++ KI + L
Sbjct: 130 LGSR---QYVHRDLAARNVLVESEHQVKIGDFGL 160
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 79
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 80 ------TREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 133
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 134 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 171
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 84 ------TREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 137
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
+H +L + L+ +N + K++ + L L H
Sbjct: 138 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 174
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 460 GLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTR 518
G P Y + +E + +G G G++Y G K + VA++ LK +
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 54
Query: 519 NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ 578
F+ ++ +++H +LV LG C + ++I E++ G L ++ E + +
Sbjct: 55 EFLKEAAVMKEIKHPNLVQLLGVC-------TREPPFYIIIEFMTYGNLLDYLRECNRQE 107
Query: 579 S-----LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
L +IS+A+ + F+H +L + L+ +N + K++ + L
Sbjct: 108 VSAVVLLYMATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLS 158
Query: 634 LLAENAEKVGHV 645
L H
Sbjct: 159 RLMTGDTYTAHA 170
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 458 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRG---RLKNG---TFVAIRCLKM 511
+L + A++ + E N +GEG G++ + LK T VA++ LK
Sbjct: 4 SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 512 KKCHST-RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 570
S R+ + ++ ++ H H++ G C S + LI EY G+LR +
Sbjct: 64 NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 571 ISEGHA---------------------HQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFS 609
+ E ++LT IS A +++G+Q+L +
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173
Query: 610 NNLKITDILLDQNLVAKISSYNL 632
+L +IL+ + KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 458 ALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRG---RLKNG---TFVAIRCLKM 511
+L + A++ + E N +GEG G++ + LK T VA++ LK
Sbjct: 4 SLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE 63
Query: 512 KKCHST-RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSW 570
S R+ + ++ ++ H H++ G C S + LI EY G+LR +
Sbjct: 64 NASPSELRDLLSEFNVLKQVNHPHVIKLYGAC-------SQDGPLLLIVEYAKYGSLRGF 116
Query: 571 ISEGHA---------------------HQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFS 609
+ E ++LT IS A +++G+Q+L +
Sbjct: 117 LRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH 173
Query: 610 NNLKITDILLDQNLVAKISSYNL 632
+L +IL+ + KIS + L
Sbjct: 174 RDLAARNILVAEGRKMKISDFGL 196
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLV 536
+F +G G GQ+++ + + +G I+ +K + R ++ ++KL H ++V
Sbjct: 12 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDHVNIV 67
Query: 537 SALGHCFECY-FDDSSVSR---------IFLIFEYVPNGTLRSWISEGHAHQSLTWTQRI 586
G C++ + +D + S+ +F+ E+ GTL WI E + L +
Sbjct: 68 HYNG-CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWI-EKRRGEKLDKVLAL 125
Query: 587 SAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ KG+ ++H+ + + +LK ++I L KI + L
Sbjct: 126 ELFEQITKGVDYIHS---KKLINRDLKPSNIFLVDTKQVKIGDFGL 168
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIEL 526
SL++ E + +G G G++Y G K + VA++ LK + F+ +
Sbjct: 2 SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 60
Query: 527 ISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LT 581
+ +++H +LV LG C + ++I E++ G L ++ E + + L
Sbjct: 61 MKEIKHPNLVQLLGVC-------TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY 113
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL 635
+IS+A+ + F+H +L + L+ +N + K++ + L L
Sbjct: 114 MATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLSRL 158
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 485 MGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G+G+ G +Y GR L N +AI+ + + ++ I L L+H+++V LG
Sbjct: 30 LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS-- 87
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRS-----WISEGHAHQSLT-WTQRISAAIGVAKGIQ 597
F ++ +IF+ E VP G+L + W Q++ +T++I + Q
Sbjct: 88 ---FSENGFIKIFM--EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ 142
Query: 598 FLHTGI-----VPGVFSNNLKITDILLDQNLVA 625
+H I + +S LKI+D + L
Sbjct: 143 IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 175
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 20/169 (11%)
Query: 469 LEELEEATNNFDTSAFMGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIELI 527
LE E N D +G+G+ G +Y GR L N +AI+ + + ++ I L
Sbjct: 1 LEYDYEYDENGD-RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALH 59
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRS-----WISEGHAHQSLT- 581
L+H+++V LG F ++ +IF+ E VP G+L + W Q++
Sbjct: 60 KHLKHKNIVQYLGS-----FSENGFIKIFM--EQVPGGSLSALLRSKWGPLKDNEQTIGF 112
Query: 582 WTQRISAAIGVAKGIQFLHTGI-----VPGVFSNNLKITDILLDQNLVA 625
+T++I + Q +H I + +S LKI+D + L
Sbjct: 113 YTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 161
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 183 VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNALGPQ 241
+L+L N +SF +L +L +L LS NH E+ F+GL L L+L +N L
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T 126
Query: 242 FPKVG----KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQ-ALLSLPS 296
P KL + L N S + L+RLDL + + + A L +
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 297 ITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLP 336
+ YLN+A L + +L+ +L +DLS N L+ P
Sbjct: 187 LRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRP 224
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 460 GLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTR 518
G P Y + +E + +G G G++Y G K + VA++ LK +
Sbjct: 14 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 67
Query: 519 NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ 578
F+ ++ +++H +LV LG C + ++I E++ G L ++ E + +
Sbjct: 68 EFLKEAAVMKEIKHPNLVQLLGVC-------TREPPFYIITEFMTYGNLLDYLRECNRQE 120
Query: 579 S-----LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
L +IS+A+ + F+H +L + L+ +N + K++ + L
Sbjct: 121 VNAVVLLYMATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLS 171
Query: 634 LLAENAEKVGHV 645
L H
Sbjct: 172 RLMTGDTYTAHA 183
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIEL 526
SL++ E + +G G G++Y G K + VA++ LK + F+ +
Sbjct: 2 SLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAV 60
Query: 527 ISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LT 581
+ +++H +LV LG C + ++I E++ G L ++ E + + L
Sbjct: 61 MKEIKHPNLVQLLGVC-------TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLY 113
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+IS+A+ + F+H +L + L+ +N + K++ + L L
Sbjct: 114 MATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTX 164
Query: 642 VGHV 645
H
Sbjct: 165 TAHA 168
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 84 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 137
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 138 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHA 175
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 285
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 286 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF 339
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H NL + L+ +N + K++ + L L H
Sbjct: 340 IH---------RNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 377
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 460 GLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTR 518
G P Y + +E + +G G G++Y G K + VA++ LK +
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 54
Query: 519 NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ 578
F+ ++ +++H +LV LG C + ++I E++ G L ++ E + +
Sbjct: 55 EFLKEAAVMKEIKHPNLVQLLGVC-------TREPPFYIITEFMTYGNLLDYLRECNRQE 107
Query: 579 S-----LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
L +IS+A+ + F+H +L + L+ +N + K++ + L
Sbjct: 108 VSAVVLLYMATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLS 158
Query: 634 LLAENAEKVGHV 645
L H
Sbjct: 159 RLMTGDTYTAHA 170
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 84 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 137
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 138 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 460 GLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTR 518
G P Y + +E + +G G G++Y G K + VA++ LK +
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVE 54
Query: 519 NFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ 578
F+ ++ +++H +LV LG C + ++I E++ G L ++ E + +
Sbjct: 55 EFLKEAAVMKEIKHPNLVQLLGVC-------TREPPFYIITEFMTYGNLLDYLRECNRQE 107
Query: 579 S-----LTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLP 633
L +IS+A+ + F+H +L + L+ +N + K++ + L
Sbjct: 108 VSAVVLLYMATQISSAMEYLEKKNFIH---------RDLAARNCLVGENHLVKVADFGLS 158
Query: 634 LLAENAEKVGHV 645
L H
Sbjct: 159 RLMTGDTYTAHA 170
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 27/140 (19%)
Query: 181 LAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNALG 239
L L L +N N ++F + NLR L LS+NH + + FS L L+VL L NN +
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI- 124
Query: 240 PQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALL----SLP 295
+++ +N F QLQ+L LS N+ + FP L+ LP
Sbjct: 125 ------------VVVDRNAFEDMA--------QLQKLYLSQNQ-ISRFPVELIKDGNKLP 163
Query: 296 SITYLNIADNKLTGKLFDDL 315
+ L+++ NKL DL
Sbjct: 164 KLMLLDLSSNKLKKLPLTDL 183
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 82
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 83 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 136
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 137 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 174
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 79
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 80 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 133
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL 635
+H +L + L+ +N + K++ + L L
Sbjct: 134 IH---------RDLAARNCLVGENHLVKVADFGLSRL 161
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 282
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 283 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 336
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H NL + L+ +N + K++ + L L H
Sbjct: 337 IH---------RNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 374
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 84 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF 137
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 138 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 469 LEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHST--RNFMHHIEL 526
L+E + + +G+G GQ+Y GR VAIR + +++ + + F +
Sbjct: 25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGE--VAIRLIDIERDNEDQLKAFKREVMA 82
Query: 527 ISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRI 586
+ RH ++V +G C S + +I TL S + + + T++I
Sbjct: 83 YRQTRHENVVLFMGACM-------SPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQI 135
Query: 587 SAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ I KG+ +LH G+ +LK ++ D V I+ + L
Sbjct: 136 AQEI--VKGMGYLHA---KGILHKDLKSKNVFYDNGKVV-ITDFGL 175
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 470 EELEEATNNFDTSAF--------MGEGSQGQ-MYRGRLKNGTFVAIRCLKMK---KCHST 517
E+ ++ +NN D +G+GS G+ M R AI+ LK +
Sbjct: 4 EDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDV 63
Query: 518 RNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH 577
M +++ L ++ L CF+ +V R++ + EYV G L I +
Sbjct: 64 ECTMVEKRVLALLDKPPFLTQLHSCFQ------TVDRLYFVMEYVNGGDLMYHIQQVGKF 117
Query: 578 QSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ Q + A ++ G+ FLH G+ +LK+ +++LD KI+ + +
Sbjct: 118 KE---PQAVFYAAEISIGLFFLHKR---GIIYRDLKLDNVMLDSEGHIKIADFGM 166
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 324
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 325 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 378
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H NL + L+ +N + K++ + L L H
Sbjct: 379 IH---------RNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 416
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 78
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 79 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 132
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
+H +L + L+ +N + K++ + L L H
Sbjct: 133 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 78
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 79 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 132
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
+H +L + L+ +N + K++ + L L H
Sbjct: 133 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH 169
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 83
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 84 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 137
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 138 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 175
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 80
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 81 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 134
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLL 635
+H +L + L+ +N + K++ + L L
Sbjct: 135 IH---------RDLAARNCLVGENHLVKVADFGLSRL 162
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 80
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 81 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 134
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 135 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 172
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 485 MGEGSQGQMYRGRLKNGTF-VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCF 543
+G G G++Y G K + VA++ LK + F+ ++ +++H +LV LG C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC- 80
Query: 544 ECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQS-----LTWTQRISAAIGVAKGIQF 598
+ ++I E++ G L ++ E + + L +IS+A+ + F
Sbjct: 81 ------TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 134
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHV 645
+H +L + L+ +N + K++ + L L H
Sbjct: 135 IH---------RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 172
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 476 TNNFDTSAFMGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRH 534
++F+ A +G+G+ GQ+ + R + + AI+ ++ + + + L++ L H++
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQY 63
Query: 535 LVSALGHCFEC------YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISA 588
+V E S +F+ EY NGTL I + +Q R+
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFR 123
Query: 589 AIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
I + + ++H+ G+ +LK +I +D++ KI + L
Sbjct: 124 QI--LEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Query: 179 PILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNA 237
P +L L+NN + D F L++L L L NN FS L LQ L + N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 238 LGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRF--VGPFPQALLSLP 295
L P + LV + + N+ R S + +++ N G P A L
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 296 SITYLNIADNKLTG 309
+ YL I++ KLTG
Sbjct: 173 KLNYLRISEAKLTG 186
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 485 MGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS---TRNFMHHIELISKLRHRHLVSALG 540
+G G+ G++ G + G VA++ L +K S I+ + RH H++
Sbjct: 19 LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHII---- 74
Query: 541 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLH 600
+ Y S+ + F++ EYV G L +I + H +R+ I A + + H
Sbjct: 75 ---KLYQVISTPTDFFMVMEYVSGGELFDYICK-HGRVEEMEARRLFQQILSA--VDYCH 128
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+V +LK ++LLD ++ AKI+ + L + + E
Sbjct: 129 RHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 550 SSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFS 609
S S +FL+F+ + G L +++E A L+ + S + + + FLH +
Sbjct: 170 ESSSFMFLVFDLMRKGELFDYLTEKVA---LSEKETRSIMRSLLEAVSFLHAN---NIVH 223
Query: 610 NNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSIDP 654
+LK +ILLD N+ ++S + E EK+ + G + P
Sbjct: 224 RDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAP 268
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Query: 485 MGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS---TRNFMHHIELISKLRHRHLVSALG 540
+G G+ G++ G + G VA++ L +K S I+ + RH H++
Sbjct: 19 LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHII---- 74
Query: 541 HCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLH 600
+ Y S+ + F++ EYV G L +I + H +R+ I A + + H
Sbjct: 75 ---KLYQVISTPTDFFMVMEYVSGGELFDYICK-HGRVEEMEARRLFQQILSA--VDYCH 128
Query: 601 TGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
+V +LK ++LLD ++ AKI+ + L + + E
Sbjct: 129 RHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMH--HIELISKLRHRH 534
+N +G G G +Y+G L VA++ + +NF++ +I + + H +
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLDERP-VAVKVFSFA---NRQNFINEKNIYRVPLMEHDN 68
Query: 535 LVSALGHCFECYFDDSSVS-----RIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
+ + D V+ L+ EY PNG+L ++S H S W A
Sbjct: 69 IARFI-------VGDERVTADGRMEYLLVMEYYPNGSLXKYLS---LHTS-DWVSSCRLA 117
Query: 590 IGVAKGIQFLHTGI------VPGVFSNNLKITDILLDQNLVAKISSYNLPL 634
V +G+ +LHT + P + +L ++L+ + IS + L +
Sbjct: 118 HSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM 168
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 79/189 (41%), Gaps = 40/189 (21%)
Query: 473 EEATNNFDTSAFMGEGSQGQMYRGR------LKNGTFVAIRCLKMKKCHSTR-NFMHHIE 525
E NN + +GEG+ G++++ R + T VA++ LK + + +F
Sbjct: 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102
Query: 526 LISKLRHRHLVSALGHCFECYFDDSSVSR-IFLIFEYVPNGTLRSWISEGHAHQ------ 578
L+++ + ++V LG C +V + + L+FEY+ G L ++ H
Sbjct: 103 LMAEFDNPNIVKLLGVC--------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSH 154
Query: 579 ---------------SLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNL 623
L+ +++ A VA G+ +L +L + L+ +N+
Sbjct: 155 SDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENM 211
Query: 624 VAKISSYNL 632
V KI+ + L
Sbjct: 212 VVKIADFGL 220
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 485 MGEGSQGQMYRG-RLKNGTFV----AIRCL-KMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+G G+ G +Y+G + G V AI+ L + + FM +++ + H HLV
Sbjct: 23 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 82
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQ-RISAAIGVAKGIQ 597
LG C I L+ + +P+G L ++ H H+ +Q ++ + +AKG+
Sbjct: 83 LGVCLS--------PTIQLVTQLMPHGCLLEYV---HEHKDNIGSQLLLNWCVQIAKGMM 131
Query: 598 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+L + +L ++L+ KI+ + L L E EK
Sbjct: 132 YLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 172
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 485 MGEGSQGQMYRG-RLKNGTFV----AIRCL-KMKKCHSTRNFMHHIELISKLRHRHLVSA 538
+G G+ G +Y+G + G V AI+ L + + FM +++ + H HLV
Sbjct: 46 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 105
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQ-RISAAIGVAKGIQ 597
LG C I L+ + +P+G L ++ H H+ +Q ++ + +AKG+
Sbjct: 106 LGVCLS--------PTIQLVTQLMPHGCLLEYV---HEHKDNIGSQLLLNWCVQIAKGMM 154
Query: 598 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+L + +L ++L+ KI+ + L L E EK
Sbjct: 155 YLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEK 195
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 36/178 (20%)
Query: 485 MGEGSQGQMYRG-RLKNGTF-------VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLV 536
+G+G+ ++++G R + G + V ++ L + + +F ++SKL H+HLV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 537 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGI 596
G CF C D ++ L+ E+V G+L +++ + ++ W ++ A +A +
Sbjct: 76 LNYGVCF-C--GDENI----LVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAWAM 126
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSIDP 654
FL + L+ N+ AK N+ L+ E K G+ P+ DP
Sbjct: 127 HFLE--------------ENTLIHGNVCAK----NILLIREEDRKTGNP-PFIKLSDP 165
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 222 FSGLTYLQVLDLENNALGPQFPKVGKKLVTMI-LSKNKFRSAIPAEVSSYYQLQRLDLSS 280
F GL++LQVL L +N L P V L + LS N R + + L+ LD+S
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535
Query: 281 NRFVGPFPQALLSLPSITYLNIADNKL 307
N+ + P P +SL + L+I NK
Sbjct: 536 NQLLAPNPDVFVSL---SVLDITHNKF 559
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 45/255 (17%)
Query: 15 LAYILLQVNHSEQLQSSQAQTLLRIQGLLNNPAVLSSWNITTEFCNTEPTSSLTVVCYEE 74
+AYI LQ NH +Q + L ++Q L ++LT + +
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTL------------------DLRDNALTTIHFIP 381
Query: 75 SITQLHIVGNKRAPMLPLSFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLE 134
SI + + GNK + ++ + + + +L +L +L + R+ L+
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF------------LLRVPHLQ 429
Query: 135 ILNMSSN-FLNGAIPXXXXXXXXXXXXXXDENML-----AGRVPDWLGSLPILAVLSLRN 188
IL ++ N F + + ENML D L L VL L +
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 189 NMFNGTLPDSFSYLENLRVLALSNNHF----YGEVPDFSGLTYLQVLDLENNALGPQFPK 244
N N P FS+L LR L+L++N + ++P L++LD+ N L P
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-----ANLEILDISRNQLLAPNPD 544
Query: 245 VGKKLVTMILSKNKF 259
V L + ++ NKF
Sbjct: 545 VFVSLSVLDITHNKF 559
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 197 DSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNALGPQFPKVG-----KKLV 250
++F L NLR+L L ++ Y PD F GL +L L L L K G K L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 251 TMILSKNKFRS-AIPAEVSSYYQLQRLDLSSNRFVGPFPQAL--LSLPSITYLNIADNKL 307
+ LSKN+ RS + L+ +D SSN+ L L ++++ ++A N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 308 TGKLFDDL-SC-----NPELGFVDLSSN----LLTGQLPNCLLAGSKNRVVLYARNCLAA 357
++ D C N L +D+S N +TG N ++ S+ ++ A + + A
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA-ISKSQAFSLILAHHIMGA 245
Query: 358 G 358
G
Sbjct: 246 G 246
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 94/264 (35%), Gaps = 52/264 (19%)
Query: 130 LSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNN 189
L L++LN++ N +N N+L LP +A + L+ N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 190 MFNGTLPDSFSYLENLRVLALSNN-----HFYGEVPD--FSG------------------ 224
+F +LE L+ L L +N HF +PD SG
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 225 ----------------LTYLQVLDLENNAL----GPQFPKVGKKLVTMILSKNKFRSAIP 264
+ +LQ+L L N G Q P L + L +N + A
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468
Query: 265 AEV-----SSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFDDLSCNP 319
E+ LQ L L+ N P L ++ L++ N+LT +DL N
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528
Query: 320 ELGFVDLSSNLLTGQLPNCLLAGS 343
E+ +D+S N L P+ ++ S
Sbjct: 529 EI--LDISRNQLLAPNPDVFVSLS 550
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G+G G+++RG L +G VA++ + +++ E+ + + RH + LG
Sbjct: 16 VGKGRYGEVWRG-LWHGESVAVKIFSSR---DEQSWFRETEIYNTVLLRH-DNILGFIAS 70
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAK-GIQFLHTGI 603
+S ++++LI Y +G+L ++ L +SAA G+A ++ T
Sbjct: 71 DMTSRNSSTQLWLITHYHEHGSLYDFLQRQTLEPHLALRLAVSAACGLAHLHVEIFGTQG 130
Query: 604 VPGVFSNNLKITDILLDQNLVAKISSYNLPLL 635
P + + K ++L+ NL I+ L ++
Sbjct: 131 KPAIAHRDFKSRNVLVKSNLQCCIADLGLAVM 162
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCLKMKKCHSTRNFMHHIELISKLRH---- 532
+FD +G GS ++ RLK + A+R +K + + + I+ + +H
Sbjct: 53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDED----IDWVQTEKHVFEQ 108
Query: 533 ---RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAHQSLTWT 583
+ L CF+ + SR+F + EYV G L + + E HA
Sbjct: 109 ASNHPFLVGLHSCFQ------TESRLFFVIEYVNGGDLMFHMQRQRKLPEEHA------- 155
Query: 584 QRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ SA I +A + +LH G+ +LK+ ++LLD K++ Y +
Sbjct: 156 RFYSAEISLA--LNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 199
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 8/168 (4%)
Query: 467 FSLEELEEATNNFDTSAFMGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIE 525
L L + F+ +G G+ GQ+Y+GR +K G AI+ + + I
Sbjct: 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV-TGDEEEEIKQEIN 72
Query: 526 LISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQ-SLTWTQ 584
++ K H ++ F +++L+ E+ G++ I + W
Sbjct: 73 MLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIA 132
Query: 585 RISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
I I +G+ LH V ++K ++LL +N K+ + +
Sbjct: 133 YICREI--LRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGV 175
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 476 TNNFDTSAFMGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRH 534
++F+ A +G+G+ GQ+ + R + + AI+ ++ + + + L++ L H++
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVXLLASLNHQY 63
Query: 535 LVSALGHCFE--CYFDDSSV----SRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISA 588
+V E + + S +F+ EY N TL I + +Q R+
Sbjct: 64 VVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQRDEYWRLFR 123
Query: 589 AIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
I + + ++H+ G+ NLK +I +D++ KI + L
Sbjct: 124 QI--LEALSYIHS---QGIIHRNLKPXNIFIDESRNVKIGDFGL 162
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 479 FDTSAFMGEGSQGQMYRGRLKN-GTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVS 537
FD +GEGS G +Y+ K G VAI+ + ++ + + I ++ + H+V
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVK 88
Query: 538 ALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQ 597
G YF ++ ++++ EY G++ I +++LT + + KG++
Sbjct: 89 YYG----SYFKNTD---LWIVMEYCGAGSVSDIIR--LRNKTLTEDEIATILQSTLKGLE 139
Query: 598 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+LH ++K +ILL+ AK++ + +
Sbjct: 140 YLH---FMRKIHRDIKAGNILLNTEGHAKLADFGV 171
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 95 SMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXX 154
S+ S +T VK DL R+ + + + R +L+ L ++SN +N
Sbjct: 45 SIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 155 XXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDS--FSYLENLRVLALSN 212
N L+ W L L L+L N + TL ++ FS+L L++L + N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGN 158
Query: 213 NHFYGEV--PDFSGLTYLQVLDLENNALGPQFPKVGKKL 249
+ ++ DF+GLT+L+ L+++ + L PK K +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 500 NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIF 559
G VA++ L+ R+F I+++ L +V G + + L+
Sbjct: 35 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSY-----GPGRPELRLVM 89
Query: 560 EYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL 619
EY+P+G LR ++ A L ++ + + + KG+++L + +L +IL+
Sbjct: 90 EYLPSGCLRDFLQRHRAR--LDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILV 144
Query: 620 DQNLVAKISSYNL 632
+ KI+ + L
Sbjct: 145 ESEAHVKIADFGL 157
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 484 FMGEGSQGQMYRGRLKNGTFVAIRCLKMKK----CHSTRNFMHHIELISKLRHRHLVSAL 539
+G G G++YR G VA++ + + N +L + L+H ++++
Sbjct: 14 IIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72
Query: 540 GHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFL 599
G C + + L+ E+ G L +S + ++ A+ +A+G+ +L
Sbjct: 73 GVCLK-------EPNLCLVMEFARGGPLNRVLSGKRIPPDIL----VNWAVQIARGMNYL 121
Query: 600 HTGIVPGVFSNNLKITDILLDQ--------NLVAKISSYNL 632
H + + +LK ++IL+ Q N + KI+ + L
Sbjct: 122 HDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 10/159 (6%)
Query: 95 SMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXXXXXX 154
S+ S +T VK DL R+ + + + R +L+ L ++SN +N
Sbjct: 19 SIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 155 XXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDS--FSYLENLRVLALSN 212
N L+ W L L L+L N + TL ++ FS+L L++L + N
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGN 132
Query: 213 NHFYGEV--PDFSGLTYLQVLDLENNALGPQFPKVGKKL 249
+ ++ DF+GLT+L+ L+++ + L PK K +
Sbjct: 133 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 463 AYRTFSLEELEEAT-NNFDTSAFMGEGSQGQMYRGRLK------NGTFVAIRCL-KMKKC 514
A +T S+ +L+E N +G G+ G++Y G++ + VA++ L ++
Sbjct: 16 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 75
Query: 515 HSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+F+ +ISKL H+++V +G + S+ R F++ E + G L+S++ E
Sbjct: 76 QDELDFLMEALIISKLNHQNIVRCIGVSLQ------SLPR-FILLELMAGGDLKSFLRET 128
Query: 575 HAH----QSLTWTQRISAAIGVAKGIQFLH 600
SL + A +A G Q+L
Sbjct: 129 RPRPSQPSSLAMLDLLHVARDIACGCQYLE 158
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 463 AYRTFSLEELEEAT-NNFDTSAFMGEGSQGQMYRGRLK------NGTFVAIRCL-KMKKC 514
A +T S+ +L+E N +G G+ G++Y G++ + VA++ L ++
Sbjct: 30 AGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSE 89
Query: 515 HSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG 574
+F+ +ISKL H+++V +G + S+ R F++ E + G L+S++ E
Sbjct: 90 QDELDFLMEALIISKLNHQNIVRCIGVSLQ------SLPR-FILLELMAGGDLKSFLRET 142
Query: 575 HAH----QSLTWTQRISAAIGVAKGIQFLH 600
SL + A +A G Q+L
Sbjct: 143 RPRPSQPSSLAMLDLLHVARDIACGCQYLE 172
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H + I A A+G+ +LH
Sbjct: 73 -----STAPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIKLIDIARQTAQGMDYLHA 122
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSI 652
+ +LK +I L ++L KI + L + SGSI
Sbjct: 123 ---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSI 170
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCLKMKKCHSTRNFMHHIELISKLRH---- 532
+FD +G GS ++ RLK + A++ +K + + + I+ + +H
Sbjct: 6 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDED----IDWVQTEKHVFEQ 61
Query: 533 ---RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAHQSLTWT 583
+ L CF+ + SR+F + EYV G L + + E HA
Sbjct: 62 ASNHPFLVGLHSCFQ------TESRLFFVIEYVNGGDLMFHMQRQRKLPEEHA------- 108
Query: 584 QRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ SA I +A + +LH G+ +LK+ ++LLD K++ Y +
Sbjct: 109 RFYSAEISLA--LNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 152
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 179 PILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNA 237
P A+L L+NN F L+NL L L NN P F+ L L+ L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 238 LGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSN--RFVGPFPQALLSLP 295
L K+ K L + + +N+ + + Q+ ++L +N + G A +
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 296 SITYLNIADNKLT 308
++Y+ IAD +T
Sbjct: 172 KLSYIRIADTNIT 184
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 33/179 (18%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLV 536
+F +G G GQ+++ + + +G IR +K + R ++ ++KL H ++V
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAER----EVKALAKLDHVNIV 68
Query: 537 SALGHCFECYFDDSSVSR-----------------------IFLIFEYVPNGTLRSWISE 573
G C++ + D S +F+ E+ GTL WI E
Sbjct: 69 HYNG-CWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWI-E 126
Query: 574 GHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ L + + KG+ ++H+ + +LK ++I L KI + L
Sbjct: 127 KRRGEKLDKVLALELFEQITKGVDYIHS---KKLIHRDLKPSNIFLVDTKQVKIGDFGL 182
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCLKMKKCHSTRNFMHHIELISKLRH---- 532
+FD +G GS ++ RLK + A++ +K + + + I+ + +H
Sbjct: 10 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDED----IDWVQTEKHVFEQ 65
Query: 533 ---RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAHQSLTWT 583
+ L CF+ + SR+F + EYV G L + + E HA
Sbjct: 66 ASNHPFLVGLHSCFQ------TESRLFFVIEYVNGGDLMFHMQRQRKLPEEHA------- 112
Query: 584 QRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ SA I +A + +LH G+ +LK+ ++LLD K++ Y +
Sbjct: 113 RFYSAEISLA--LNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 156
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 179 PILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNA 237
P A+L L+NN F L+NL L L NN P F+ L L+ L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 238 LGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSN--RFVGPFPQALLSLP 295
L K+ K L + + +N+ + + Q+ ++L +N + G A +
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 296 SITYLNIADNKLT 308
++Y+ IAD +T
Sbjct: 172 KLSYIRIADTNIT 184
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 19/191 (9%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHI 524
R S ++ E +G GS G +Y+G+ V + + + F + +
Sbjct: 23 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEV 82
Query: 525 ELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLT 581
++ K RH +++ +G+ S+ ++ ++ ++ +L H H
Sbjct: 83 GVLRKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFE 129
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+ I A A+G+ +LH + +LK +I L ++L KI + L +
Sbjct: 130 MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG 186
Query: 642 VGHVIPYSGSI 652
SGSI
Sbjct: 187 SHQFEQLSGSI 197
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 36/169 (21%)
Query: 478 NFDTSAFMGEGSQGQMYRGRLKNGTFV-AIRCLKMKKCHSTRNFMHHIELISKLRH---- 532
+FD +G GS ++ RLK + A++ +K + + + I+ + +H
Sbjct: 21 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDED----IDWVQTEKHVFEQ 76
Query: 533 ---RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTL------RSWISEGHAHQSLTWT 583
+ L CF+ + SR+F + EYV G L + + E HA
Sbjct: 77 ASNHPFLVGLHSCFQ------TESRLFFVIEYVNGGDLMFHMQRQRKLPEEHA------- 123
Query: 584 QRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ SA I +A + +LH G+ +LK+ ++LLD K++ Y +
Sbjct: 124 RFYSAEISLA--LNYLHE---RGIIYRDLKLDNVLLDSEGHIKLTDYGM 167
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 74/191 (38%), Gaps = 19/191 (9%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHI 524
R S ++ E +G GS G +Y+G+ V + + + F + +
Sbjct: 24 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEV 83
Query: 525 ELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLT 581
++ K RH +++ +G+ S+ ++ ++ ++ +L H H
Sbjct: 84 GVLRKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFE 130
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEK 641
+ I A A+G+ +LH + +LK +I L ++L KI + L +
Sbjct: 131 MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG 187
Query: 642 VGHVIPYSGSI 652
SGSI
Sbjct: 188 SHQFEQLSGSI 198
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELI 527
S ++ E +G GS G +Y+G+ V + + + F + + ++
Sbjct: 4 SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQ 584
K RH +++ +G+ S+ ++ ++ ++ +L H H +
Sbjct: 64 RKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIK 110
Query: 585 RISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
I A A+G+ +LH + +LK +I L ++L KI + L +
Sbjct: 111 LIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 167
Query: 645 VIPYSGSI 652
SGSI
Sbjct: 168 FEQLSGSI 175
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 524 IELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWT 583
IE + LRH+H + L H E + ++IF++ EY P G L +I + L+
Sbjct: 59 IEALKNLRHQH-ICQLYHVLE------TANKIFMVLEYCPGGELFDYII---SQDRLSEE 108
Query: 584 QRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ + + ++H+ G +LK ++L D+ K+ + L
Sbjct: 109 ETRVVFRQIVSAVAYVHS---QGYAHRDLKPENLLFDEYHKLKLIDFGL 154
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 500 NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIF 559
G VA++ L+ R+F I+++ L +V G + + L+
Sbjct: 51 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSY-----GPGRQSLRLVM 105
Query: 560 EYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL 619
EY+P+G LR ++ A L ++ + + + KG+++L + +L +IL+
Sbjct: 106 EYLPSGCLRDFLQRHRAR--LDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILV 160
Query: 620 DQNLVAKISSYNL 632
+ KI+ + L
Sbjct: 161 ESEAHVKIADFGL 173
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 123 LSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILA 182
+G + LSSLE+L M+ N EN L PD L L
Sbjct: 142 FNGIFNGLSSLEVLKMAGN-------------------SFQENFL----PDIFTELRNLT 178
Query: 183 VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNAL--- 238
L L P +F+ L +L+VL +S+N+F+ + + L LQVLD N +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 239 -GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQ 272
+ L + L++N F A E S+ Q
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDF--ACTCEHQSFLQ 271
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 32/146 (21%)
Query: 178 LPILAVLSLRNNMFNGT-LPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLEN 235
L L VL + N F LPD F+ L NL L LS P F+ L+ LQVL++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM-- 206
Query: 236 NALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLP 295
S N F S LQ LD S N + Q L P
Sbjct: 207 -------------------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 296 -SITYLNIADNKLTGKLFDDLSCNPE 320
S+ +LN+ N D +C E
Sbjct: 248 SSLAFLNLTQN--------DFACTCE 265
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 500 NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIF 559
G VA++ L+ R+F I+++ L +V G + + L+
Sbjct: 38 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSY-----GPGRQSLRLVM 92
Query: 560 EYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL 619
EY+P+G LR ++ A L ++ + + + KG+++L + +L +IL+
Sbjct: 93 EYLPSGCLRDFLQRHRAR--LDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILV 147
Query: 620 DQNLVAKISSYNL 632
+ KI+ + L
Sbjct: 148 ESEAHVKIADFGL 160
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 500 NGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIF 559
G VA++ L+ R+F I+++ L +V G + + L+
Sbjct: 39 TGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSY-----GPGRQSLRLVM 93
Query: 560 EYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL 619
EY+P+G LR ++ A L ++ + + + KG+++L + +L +IL+
Sbjct: 94 EYLPSGCLRDFLQRHRAR--LDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILV 148
Query: 620 DQNLVAKISSYNL 632
+ KI+ + L
Sbjct: 149 ESEAHVKIADFGL 161
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H + I A A+G+ +LH
Sbjct: 73 -----STKPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIKLIDIARQTAQGMDYLHA 122
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSI 652
+ +LK +I L ++L KI + L + SGSI
Sbjct: 123 ---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSI 170
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 476 TNNFDTSAFMGEGSQGQMYRGR-LKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRH 534
++F+ A +G+G+ GQ+ + R + + AI+ ++ + + + L++ L H++
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQY 63
Query: 535 LVSALGHCFEC------YFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISA 588
+V E S +F+ EY N TL I + +Q R+
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRLFR 123
Query: 589 AIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
I + + ++H+ G+ +LK +I +D++ KI + L
Sbjct: 124 QI--LEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELI 527
S ++ E +G GS G +Y+G+ V + + + F + + ++
Sbjct: 1 SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 60
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQ 584
K RH +++ +G+ S+ ++ ++ ++ +L H H +
Sbjct: 61 RKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIK 107
Query: 585 RISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
I A A+G+ +LH + +LK +I L ++L KI + L +
Sbjct: 108 LIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 164
Query: 645 VIPYSGSI 652
SGSI
Sbjct: 165 FEQLSGSI 172
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHI 524
R S ++ E +G GS G +Y+G+ V + + + F + +
Sbjct: 16 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEV 75
Query: 525 ELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLT 581
++ K RH +++ +G+ S+ ++ ++ ++ +L H H
Sbjct: 76 GVLRKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFE 122
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ I A A+G+ +LH + +LK +I L ++L KI + L
Sbjct: 123 MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGL 170
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 468 SLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELI 527
S ++ E +G GS G +Y+G+ V + + + F + + ++
Sbjct: 4 SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 528 SKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQ 584
K RH +++ +G+ S+ ++ ++ ++ +L H H +
Sbjct: 64 RKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIK 110
Query: 585 RISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGH 644
I A A+G+ +LH + +LK +I L ++L KI + L +
Sbjct: 111 LIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 167
Query: 645 VIPYSGSI 652
SGSI
Sbjct: 168 FEQLSGSI 175
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLT---WTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H S T + I A A+G+ +LH
Sbjct: 89 -----STAPQLAIVTQWCEGSSLYH-----HLHASETKFEMKKLIDIARQTARGMDYLH- 137
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +LK +I L ++ KI + L
Sbjct: 138 --AKSIIHRDLKSNNIFLHEDNTVKIGDFGL 166
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 465 RTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHI 524
R S ++ E +G GS G +Y+G+ V + + + F + +
Sbjct: 24 RRDSSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEV 83
Query: 525 ELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLT 581
++ K RH +++ +G+ S+ ++ ++ ++ +L H H
Sbjct: 84 GVLRKTRHVNILLFMGY--------STKPQLAIVTQWCEGSSLYH-----HLHIIETKFE 130
Query: 582 WTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ I A A+G+ +LH + +LK +I L ++L KI + L
Sbjct: 131 MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGL 178
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 70/171 (40%), Gaps = 19/171 (11%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 20 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 76
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLT---WTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H S T + I A A+G+ +LH
Sbjct: 77 -----STKPQLAIVTQWCEGSSLYH-----HLHASETKFEMKKLIDIARQTARGMDYLH- 125
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSI 652
+ +LK +I L ++ KI + L + SGSI
Sbjct: 126 --AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSI 174
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH---QSLTWTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H + I A A+G+ +LH
Sbjct: 73 -----STKPQLAIVTQWCEGSSLYH-----HLHIIETKFEMIKLIDIARQTAQGMDYLHA 122
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +LK +I L ++L KI + L
Sbjct: 123 ---KSIIHRDLKSNNIFLHEDLTVKIGDFGL 150
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 36/178 (20%)
Query: 485 MGEGSQGQMYRG-RLKNGTF-------VAIRCLKMKKCHSTRNFMHHIELISKLRHRHLV 536
+G+G+ ++++G R + G + V ++ L + + +F ++SKL H+HLV
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLV 75
Query: 537 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGI 596
G C C D ++ L+ E+V G+L +++ + ++ W ++ A +A +
Sbjct: 76 LNYGVCV-C--GDENI----LVQEFVKFGSLDTYLKKNKNCINILW--KLEVAKQLAAAM 126
Query: 597 QFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAEKVGHVIPYSGSIDP 654
FL + L+ N+ AK N+ L+ E K G+ P+ DP
Sbjct: 127 HFLE--------------ENTLIHGNVCAK----NILLIREEDRKTGNP-PFIKLSDP 165
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINAMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
Query: 205 LRVLALSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNK------ 258
L L +SNN ++P+ ++L+++D++NN+L + P + L + N+
Sbjct: 133 LEYLGVSNNQL-EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPE 190
Query: 259 -----FRSAIPAEVSSYYQLQRLDLSSNRFVG--------------PFPQALLS------ 293
F +AI A+ +S +L L LS V PF + +
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 250
Query: 294 -----LPSITYLNIADNKLTGKLFDDLSCNPE-LGFVDLSSNLLTG--QLPNCL--LAGS 343
PS+ LN+ DN LT DL P+ L F+D+S N+ +G +LP L L S
Sbjct: 251 TLPDLPPSLEALNVRDNYLT-----DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 344 KNRV 347
N +
Sbjct: 306 SNEI 309
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 173 DWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVP--DFSGLTYLQV 230
D S P L L L N+ + P +F+ L NLR L L +N +P F+GL+ L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTK 108
Query: 231 LDLENNAL 238
LD+ N +
Sbjct: 109 LDISENKI 116
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 225 LTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFV 284
L+ LQ+ ++ N F L + L+ N + +PAE+ + L+ LDLS NR
Sbjct: 231 LSNLQIFNISANIFKYDF------LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT 283
Query: 285 GPFPQALLSLPSITYLNIADNKLTG--KLFDDLSCNPELGFVDLSSNLLTGQLPNCLLAG 342
P L S + Y DN +T F +L CN L F+ + N L Q L
Sbjct: 284 S-LPAELGSCFQLKYFYFFDNMVTTLPWEFGNL-CN--LQFLGVEGNPLEKQFLKILTEK 339
Query: 343 SKNRVVLYARN 353
S ++ Y R+
Sbjct: 340 SVTGLIFYLRD 350
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 10/180 (5%)
Query: 91 PLSFSMDSFVTTLVKLPDLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNFLNGAIPXX 150
P +F+ + VK DL ++ +L L S + LE L ++ N +N
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFAL-----LKSVFSHFTDLEQLTLAQNEINKIDDNA 318
Query: 151 XXXXXXXXXXXXDENMLAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLAL 210
+N L +L L VL L N SF L NL+ LAL
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 211 SNNHFYGEVPD--FSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVS 268
N VPD F LT LQ + L N P++ ++ L+KN + A+ S
Sbjct: 379 DTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI--DYLSRWLNKNSQKEQGSAKCS 435
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 39/171 (22%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS--TRNFMHHIELISKLRHR 533
NF +GEG+ G +Y+ R K G VA++ +++ + I L+ +L H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 534 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVA 593
++V L + ++++L+FE H HQ L SA G+
Sbjct: 62 NIVKLLDVI-------HTENKLYLVFE--------------HVHQDLKTFMDASALTGIP 100
Query: 594 ------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+G+ F H+ V +LK ++L++ K++ + L
Sbjct: 101 LPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 63 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 100
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 101 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 149
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 19/151 (12%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLVSALGHCFE 544
+G GS G +Y+G+ V + + + F + + ++ K RH +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 545 CYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLT---WTQRISAAIGVAKGIQFLHT 601
S+ ++ ++ ++ +L H H S T + I A A+G+ +LH
Sbjct: 89 -----STKPQLAIVTQWCEGSSLYH-----HLHASETKFEMKKLIDIARQTARGMDYLH- 137
Query: 602 GIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +LK +I L ++ KI + L
Sbjct: 138 --AKSIIHRDLKSNNIFLHEDNTVKIGDFGL 166
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E +L EY G L RI IG+
Sbjct: 65 ENVVKFYGHRREGNIQ-------YLFLEYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 65 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 102
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 103 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 151
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E +L EY G L RI IG+
Sbjct: 64 ENVVKFYGHRREGNIQ-------YLFLEYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 230 VLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQ 289
++D L + + + + L +N + P S Y +L+R+DLS+N+ P
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 290 ALLSLPSITYLNIADNKLT 308
A L S+ L + NK+T
Sbjct: 75 AFQGLRSLNSLVLYGNKIT 93
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 184 LSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNALGPQF 242
+ L N P +FS + LR + LSNN PD F GL L L L N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 243 PK 244
PK
Sbjct: 96 PK 97
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 476 TNNFDTSAFMGEGSQG--QMYRGRLKNGTFVAIRCLKMKKC-HSTRNFMHHIELISKLRH 532
++D +GEG+ G Q+ R+ VA++ + MK+ N I + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 533 RHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGV 592
++V GH E ++ +FL EY G L RI IG+
Sbjct: 64 ENVVKFYGHRRE-----GNIQYLFL--EYCSGGEL---------------FDRIEPDIGM 101
Query: 593 AK------------GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ G+ +LH GI G+ ++K ++LLD+ KIS + L
Sbjct: 102 PEPDAQRFFHQLMAGVVYLH-GI--GITHRDIKPENLLLDERDNLKISDFGL 150
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 485 MGEGSQGQMYRG-RLKNGTFVAIR-CLKMKKCHSTRN----FMHHIELISKLRHRHLVSA 538
+G G G +++G + G + I C+K+ + S R H+ I L H H+V
Sbjct: 39 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 98
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQ-RISAAIGVAKGIQ 597
LG C S + L+ +Y+P G+L + + H+ Q ++ + +AKG+
Sbjct: 99 LGLC--------PGSSLQLVTQYLPLGSLLDHVRQ---HRGALGPQLLLNWGVQIAKGMY 147
Query: 598 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L G+ NL ++LL +++ + +
Sbjct: 148 YLEEH---GMVHRNLAARNVLLKSPSQVQVADFGV 179
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRL----KNGTFVAIRCLK----MKKCHSTRNFMHHIELIS 528
NF+ +G G+ G+++ R G A++ LK ++K +T + +++
Sbjct: 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 113
Query: 529 KLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGH---AHQSLTWTQR 585
+R + L + F+ + +++ LI +Y+ G L + +S+ H+ +
Sbjct: 114 HIRQSPFLVTLHYAFQ------TETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGE 167
Query: 586 ISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL--PLLAENAEK 641
I A+ + LH G+ ++K+ +ILLD N ++ + L +A+ E+
Sbjct: 168 IVLAL------EHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER 216
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 230 VLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQ 289
++D L + + + + L +N + P S Y +L+R+DLS+N+ P
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 290 ALLSLPSITYLNIADNKLT 308
A L S+ L + NK+T
Sbjct: 75 AFQGLRSLNSLVLYGNKIT 93
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 184 LSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNALGPQF 242
+ L N P +FS + LR + LSNN PD F GL L L L N + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 243 PK 244
PK
Sbjct: 96 PK 97
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Query: 177 SLPILAVLSLRNN-MFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLE 234
L +L L L +N P +F L L L L P F GL LQ L L+
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 235 NNAL----GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQA 290
+NAL F +G L + L N+ S + L RL L NR P A
Sbjct: 137 DNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 195
Query: 291 LLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSN 329
L + L + N L+ + L+ L ++ L+ N
Sbjct: 196 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 22/130 (16%)
Query: 186 LRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNALGPQFPK 244
L N + SF NL +L L +N + F+GL L+ LDL +NA
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA------- 90
Query: 245 VGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIAD 304
+ RS PA +L L L P L ++ YL + D
Sbjct: 91 -------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 305 NKLTGKLFDD 314
N L L DD
Sbjct: 138 NALQA-LPDD 146
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 124 SGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILAV 183
+G L +LE L ++ N L D N L P SL L
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 184 LSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD--FSGLTYLQVLDLENNAL 238
LSL N F L +L+ L L NN VP+ F LT L+ L L+NN L
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 43/176 (24%)
Query: 474 EATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELIS 528
E NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLK 64
Query: 529 KLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISA 588
+L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 65 ELNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASA 103
Query: 589 AIGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 104 LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 156
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 123 LSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILA 182
+G + LSSLE+L M+ N EN L PD L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGN-------------------SFQENFL----PDIFTELRNLT 473
Query: 183 VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNAL--- 238
L L P +F+ L +L+VL +S+N+F+ + + L LQVLD N +
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 239 -GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQ 272
+ L + L++N F A E S+ Q
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDF--ACTCEHQSFLQ 566
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 32/146 (21%)
Query: 178 LPILAVLSLRNNMFNGT-LPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLEN 235
L L VL + N F LPD F+ L NL L LS P F+ L+ LQVL++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM-- 501
Query: 236 NALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLP 295
S N F S LQ LD S N + Q L P
Sbjct: 502 -------------------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
Query: 296 -SITYLNIADNKLTGKLFDDLSCNPE 320
S+ +LN+ N D +C E
Sbjct: 543 SSLAFLNLTQN--------DFACTCE 560
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 43/176 (24%)
Query: 474 EATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELIS 528
E NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLK 64
Query: 529 KLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISA 588
+L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 65 ELNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASA 103
Query: 589 AIGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 104 LTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 156
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 7/159 (4%)
Query: 177 SLPILAVLSLRNN-MFNGTLPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLE 234
L +L L L +N P +F L L L L P F GL LQ L L+
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 235 NNAL----GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQA 290
+NAL F +G L + L N+ S + L RL L NR P A
Sbjct: 138 DNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 291 LLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSN 329
L + L + N L+ + L+ L ++ L+ N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 22/130 (16%)
Query: 186 LRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNALGPQFPK 244
L N + SF NL +L L +N + F+GL L+ LDL +NA
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA------- 91
Query: 245 VGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIAD 304
+ RS PA +L L L P L ++ YL + D
Sbjct: 92 -------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 305 NKLTGKLFDD 314
N L L DD
Sbjct: 139 NALQA-LPDD 147
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 123 LSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILA 182
+G + LSSLE+L M+ N EN L PD L L
Sbjct: 461 FNGIFNGLSSLEVLKMAGN-------------------SFQENFL----PDIFTELRNLT 497
Query: 183 VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNAL--- 238
L L P +F+ L +L+VL +S+N+F+ + + L LQVLD N +
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 239 -GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQ 272
+ L + L++N F A E S+ Q
Sbjct: 558 KKQELQHFPSSLAFLNLTQNDF--ACTCEHQSFLQ 590
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 54/146 (36%), Gaps = 32/146 (21%)
Query: 178 LPILAVLSLRNNMFNGT-LPDSFSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLEN 235
L L VL + N F LPD F+ L NL L LS P F+ L+ LQVL++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM-- 525
Query: 236 NALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLP 295
S N F S LQ LD S N + Q L P
Sbjct: 526 -------------------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566
Query: 296 -SITYLNIADNKLTGKLFDDLSCNPE 320
S+ +LN+ N D +C E
Sbjct: 567 SSLAFLNLTQN--------DFACTCE 584
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 198 SFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVLDLENNA----LGPQFPKVGKKLVTM 252
SF NL +L L +N G + F+GLT L+ LDL +NA + P + L T+
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 253 ILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKL 307
L + + P LQ L L N L ++T+L + N++
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 108 DLKVLRLVSLGLWGPLSGKISRLSSLEILNMSSNF-LNGAIPXXXXXXXXXXXXXXDENM 166
+L +L L S L G + + L+ LE L++S N L P D
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 167 LAGRVPDWLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD--FSG 224
L P L L L L++N ++F L NL L L N VP+ F G
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRG 174
Query: 225 LTYLQVLDLENNALGPQFPKVGK---KLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSN 281
L L L L N + P + +L+T+ L N S +PAEV
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEV-------------- 219
Query: 282 RFVGPFPQALLSLPSITYLNIADN 305
L+ L S+ YL + DN
Sbjct: 220 ---------LVPLRSLQYLRLNDN 234
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 485 MGEGSQGQMYRG-RLKNGTFVAIR-CLKMKKCHSTRN----FMHHIELISKLRHRHLVSA 538
+G G G +++G + G + I C+K+ + S R H+ I L H H+V
Sbjct: 21 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRL 80
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQ-RISAAIGVAKGIQ 597
LG C S + L+ +Y+P G+L + + H+ Q ++ + +AKG+
Sbjct: 81 LGLC--------PGSSLQLVTQYLPLGSLLDHVRQ---HRGALGPQLLLNWGVQIAKGMY 129
Query: 598 FLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+L G+ NL ++LL +++ + +
Sbjct: 130 YLEEH---GMVHRNLAARNVLLKSPSQVQVADFGV 161
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------IGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ K++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIKVADF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 166 MLAGRVPDWLGSLPILA-VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSG 224
+L G+ + + P+ L +R + PD L NL +L N Y EV +
Sbjct: 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC-QNQGKYEEVEYY-- 175
Query: 225 LTYLQVLDLENNALGPQFPKVGK---KLVTMILSKNKFRSA 262
Y + L++ LGP P V K L + L + KF+ A
Sbjct: 176 --YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 457 GALGLPAYRTFSLEELEEATNNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHS 516
G+L + Y+ +EE+ +G G+ G + + + + VAI+ ++ +
Sbjct: 1 GSLHMIDYKEIEVEEV------------VGRGAFGVVCKAKWR-AKDVAIKQIESES--E 45
Query: 517 TRNFMHHIELISKLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHA 576
+ F+ + +S++ H ++V G C ++ + L+ EY G+L + +
Sbjct: 46 RKAFIVELRQLSRVNHPNIVKLYGAC---------LNPVCLVMEYAEGGSLYNVLHGAEP 96
Query: 577 HQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL 619
T +S + ++G+ +LH+ + +LK ++LL
Sbjct: 97 LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 139
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 194 TLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKV--GK-KLV 250
+LP S + L+NL+ L + N+ P L L+ LDL +P + G+ L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 251 TMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPS 296
+IL +P ++ QL++LDL + P + LP+
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS--TRNFMHHIELISKLR 531
+ NF +GEG+ G +Y+ R K G VA++ +++ + I L+ +L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 63 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 101
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 102 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGL 151
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS--TRNFMHHIELISKLRHR 533
NF +GEG+ G +Y+ R K G VA++ +++ + I L+ +L H
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 534 HLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVA 593
++V L + ++++L+FE++ HQ L SA G+
Sbjct: 67 NIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTGIP 105
Query: 594 ------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+G+ F H+ V +LK ++L++ K++ + L
Sbjct: 106 LPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 153
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 62 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 100
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 101 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 152
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 61 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 99
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 151
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 62 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKTFMDASAL 100
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 101 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 152
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 61 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 99
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 151
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 62
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 63 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 101
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 102 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 153
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 62 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 100
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 101 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 152
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 60
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 61 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 99
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 IPLPLIKSYLFQLLQGLSFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 60 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 98
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGL 150
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 60
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 61 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 99
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 60
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 61 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 99
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 59 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 97
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 98 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 59
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 60 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 98
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 60 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 98
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 150
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 59
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 60 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 98
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 59 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 97
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 98 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 60 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 98
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 150
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 60
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 61 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 99
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 59
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 60 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 98
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 19 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 71
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 72 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 123
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 124 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 171
Query: 631 NL 632
Sbjct: 172 GF 173
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 477 NNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHL 535
+ F+ +G GS G+ M ++ G A++ L +K + H L + +
Sbjct: 41 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEIEH------TLNEKRI 94
Query: 536 VSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAHQSLTWTQR 585
+ A+ F E F D+S ++++ EY P G + S + SE HA R
Sbjct: 95 LQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGRFSEPHA--------R 144
Query: 586 ISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
AA + ++LH+ + +LK ++++DQ K++ + L
Sbjct: 145 FYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDFGL 187
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 59
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 60 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 98
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 59 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKDFMDASAL 97
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 98 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGL 149
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 59 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 97
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 98 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 28/148 (18%)
Query: 123 LSGKISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDWLGSLPILA 182
+G + LSSLE+L M+ N EN L PD L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGN-------------------SFQENFL----PDIFTELRNLT 473
Query: 183 VLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD--FSGLTYLQVLDLENNALGP 240
L L P +F+ L +L+VL +++N VPD F LT LQ + L N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 241 QFPKVGKKLVTMILSKNKFRSAIPAEVS 268
P++ ++ L+KN + A+ S
Sbjct: 533 SCPRI--DYLSRWLNKNSQKEQGSAKCS 558
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 43/205 (20%)
Query: 474 EATNNFDTSAFM---GEGSQGQMY--RGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELIS 528
+ TN T FM G G+ +++ + RL G A++C+K + + I ++
Sbjct: 3 QTTNIRKTFIFMEVLGSGAFSEVFLVKQRL-TGKLFALKCIKKSPAFRDSSLENEIAVLK 61
Query: 529 KLRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAH----QSLTWTQ 584
K++H ++V+ L +E S + +L+ + V G L I E + SL Q
Sbjct: 62 KIKHENIVT-LEDIYE------STTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQ 114
Query: 585 RISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILL---DQNLVAKISSYNLPLLAEN--- 638
+SA +++LH G+ +LK ++L ++N I+ + L + +N
Sbjct: 115 VLSA-------VKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM 164
Query: 639 ----------AEKVGHVIPYSGSID 653
A +V PYS ++D
Sbjct: 165 STACGTPGYVAPEVLAQKPYSKAVD 189
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 43/175 (24%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 58
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ HQ L SA
Sbjct: 59 LNHPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASAL 97
Query: 590 IGVA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 98 TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 485 MGEGSQGQMYRGRLKNGTFVAIRC----LKMKKCHSTRNFMHHIELISKLRHRHLVSALG 540
+G GS +Y+G T C K+ K R F E + L+H ++V
Sbjct: 34 IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQR-FKEEAEXLKGLQHPNIVR--- 89
Query: 541 HCFECYFD--DSSVSR---IFLIFEYVPNGTLRSWISEGHAHQS---LTWTQRISAAIGV 592
++D +S+V I L+ E +GTL++++ + +W ++I
Sbjct: 90 -----FYDSWESTVKGKKCIVLVTELXTSGTLKTYLKRFKVXKIKVLRSWCRQI------ 138
Query: 593 AKGIQFLHTGIVPGVFSNNLKITDILL 619
KG+QFLHT P + +LK +I +
Sbjct: 139 LKGLQFLHTR-TPPIIHRDLKCDNIFI 164
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKMKKCHS--TRNFMHHIELISKLR 531
+ NF +GEG+ G +Y+ R K G VA++ +++ + I L+ +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE+V + L+ ++ + A + S
Sbjct: 64 HPNIVKLLDVI-------HTENKLYLVFEHV-DQDLKKFM-DASALTGIPLPLIKSYLFQ 114
Query: 592 VAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 115 LLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 152
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/143 (18%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLKNGTFVAIRCLKMKKCHSTRNFMHHIELISKLRHRHLV 536
+ +G G+ G + + + + VAI+ ++ + + F+ + +S++ H ++V
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIV 64
Query: 537 SALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGI 596
G C ++ + L+ EY G+L + + T +S + ++G+
Sbjct: 65 KLYGAC---------LNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGV 115
Query: 597 QFLHTGIVPGVFSNNLKITDILL 619
+LH+ + +LK ++LL
Sbjct: 116 AYLHSMQPKALIHRDLKPPNLLL 138
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 21/186 (11%)
Query: 127 ISRLSSLEILNMSSNFLNGAIPXXXXXXXXXXXXXXDENMLAGRVPDW--LGSLPILAVL 184
+S L+SL+ LN SSN + P ++ + +V D L L L L
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLANLTTLERL------DISSNKVSDISVLAKLTNLESL 200
Query: 185 SLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPK 244
NN + P L NL L+L+ N ++ + LT L LDL NN + P
Sbjct: 201 IATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAPL 257
Query: 245 VG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYL--- 300
G KL + L N+ + P ++ L L+L+ N+ P + +L ++TYL
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 313
Query: 301 --NIAD 304
NI+D
Sbjct: 314 FNNISD 319
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +L
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKELN 61
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 62 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 100
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 101 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 150
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 23/119 (19%)
Query: 174 WLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNN-----HFYGEVPDFSGLTYL 228
WL + P L + L N + F ++ L L +SNN + YG+ + L
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTL 303
Query: 229 QVLDLENNAL------GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSN 281
+VLDL +N L PQF +L + L N S + ++S+++ L+ L LS N
Sbjct: 304 KVLDLSHNHLLHVERNQPQF----DRLENLYLDHN---SIVTLKLSTHHTLKNLTLSHN 355
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------IGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY+P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYMPGGDMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ K++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIKVADF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 20/114 (17%)
Query: 242 FPK-VGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYL 300
PK + + + + L N+F + +P E+S+Y L +DLS+NR Q+ ++ + L
Sbjct: 25 LPKGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 301 NIADNKLTG---KLFD-------------DLSCNPELGFVDLS--SNLLTGQLP 336
++ N+L + FD D+S PE F DLS S+L G P
Sbjct: 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 208 LALSNNHFYGEVPDFSGLTYLQVLDLENN---ALGPQFPKVGKKLVTMILSKNKFRSAIP 264
L L N F + S +L ++DL NN L Q +L+T+ILS N+ R P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 265 AEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKL 307
L+ L L N A L ++++L I N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------IGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY+P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYMPGGDMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ K++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIKVADF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 254 LSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS--LPSITYLNIADNKLTGKL 311
++N F ++ S+ +LQ L L N F AL++ + S+ L+++ N L
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 312 FDDLSCNPELGFV-DLSSNLLTGQLPNCL 339
+D E V +LSSN+LTG + CL
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCL 448
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 186 LRNNMFNGTLPDSFSYLENLRV-LALSNNHFYGEVPDFSGLTYLQVLDLENNAL-GPQFP 243
L+N + + S LE L V L N+H Y ++ + VL+L +N L G F
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--ESILVLNLSSNMLTGSVFR 446
Query: 244 KVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIA 303
+ K+ + L N+ S IP +V+ LQ L+++SN+ L S+ Y+ +
Sbjct: 447 CLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Query: 304 DN 305
DN
Sbjct: 506 DN 507
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 266 EVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTGKLFD 313
EV + + RLD+ NRF+G + + P T L IA L G D
Sbjct: 266 EVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMD 313
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
Query: 174 WLGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNN-----HFYGEVPDFSGLTYL 228
WL + P L + L N + F ++ L L +SNN + YG+ + L
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTL 297
Query: 229 QVLDLENNAL------GPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNR 282
+VLDL +N L PQF +L + L N S + ++S+++ L+ L LS N
Sbjct: 298 KVLDLSHNHLLHVERNQPQF----DRLENLYLDHN---SIVTLKLSTHHTLKNLTLSHND 350
Query: 283 F 283
+
Sbjct: 351 W 351
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 204 NLRVLALSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAI 263
NL LA +N D + LT L L+ + N L L + ++N
Sbjct: 86 NLTYLACDSNKLTN--LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI- 142
Query: 264 PAEVSSYYQLQRLDLSSNRFVGPF---PQALL-----SLPSITYLNIADNKLTGKL-FD- 313
+VS QL LD N+ + PQ L S IT L+++ NKL +L D
Sbjct: 143 --DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDT 200
Query: 314 ------DLSCNPELGFVDLSSNLLT 332
DL+ N +L F+D SSN LT
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNKLT 225
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 535 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAK 594
++ L CF+ ++ R++ + EYV G L I + + + A +A
Sbjct: 82 FLTQLHSCFQ------TMDRLYFVMEYVNGGDLMYHIQQVGRFKE---PHAVFYAAEIAI 132
Query: 595 GIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
G+ FL + G+ +LK+ +++LD KI+ + +
Sbjct: 133 GLFFLQS---KGIIYRDLKLDNVMLDSEGHIKIADFGM 167
>pdb|2Z2E|A Chain A, Crystal Structure Of Canine Milk Lysozyme Stabilized
Against Non-Enzymatic Deamidation
pdb|2Z2E|B Chain B, Crystal Structure Of Canine Milk Lysozyme Stabilized
Against Non-Enzymatic Deamidation
Length = 129
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 455 KLGALGLPAYRTFSLEE---LEEATNNFDTSAFMGEGSQG 491
KL ++G+ + +SL + E +NF+T AF G SQG
Sbjct: 11 KLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFQGRQSQG 50
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 572 SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYN 631
S+G + +T IS + VA+G++FL + +L +ILL +N V KI +
Sbjct: 188 SDGFYKEPITMEDLISYSFQVARGMEFLSSR---KCIHRDLAARNILLSENNVVKICDFG 244
Query: 632 L 632
L
Sbjct: 245 L 245
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLTKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA+ +++ + ST + I L+ +L
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKELN 60
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 61 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 99
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 100 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 43/173 (24%)
Query: 477 NNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISKLR 531
NF +GEG+ G +Y+ R K G VA+ +++ + ST + I L+ +L
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTA--IREISLLKELN 59
Query: 532 HRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIG 591
H ++V L + ++++L+FE++ HQ L SA G
Sbjct: 60 HPNIVKLLDVI-------HTENKLYLVFEFL--------------HQDLKKFMDASALTG 98
Query: 592 VA------------KGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 99 IPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 148
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLTKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKEI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIQVTDF 185
Query: 631 NL 632
L
Sbjct: 186 GL 187
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 218 EVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLD 277
EV D S L QV D + + + L+ N+ R A + Y QL LD
Sbjct: 17 EVADCSHLKLTQVPD-----------DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 65
Query: 278 LSSNRFVGPFPQALLSLPSITYLNIADNKLT 308
+ N P+ LP + LN+ N+L+
Sbjct: 66 VGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 218 EVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLD 277
EV D S L QV D + + + L+ N+ R A + Y QL LD
Sbjct: 7 EVADCSHLKLTQVPD-----------DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 278 LSSNRFVGPFPQALLSLPSITYLNIADNKLT 308
+ N P+ LP + LN+ N+L+
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ + L+ ++ + A + S
Sbjct: 62 LNHPNIVKLLDVI-------HTENKLYLVFEFL-SMDLKDFM-DASALTGIPLPLIKSYL 112
Query: 590 IGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 113 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 152
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 218 EVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLD 277
EV D S L QV D + + + L+ N+ R A + Y QL LD
Sbjct: 12 EVADCSHLKLTQVPD-----------DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 60
Query: 278 LSSNRFVGPFPQALLSLPSITYLNIADNKLT 308
+ N P+ LP + LN+ N+L+
Sbjct: 61 VGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 178 LPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNN-------HFYGEVPDFSGLTYLQV 230
LP L L L +N +F YL LR L L NN + + VP L ++
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 231 LDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRF----VGP 286
LE + V + + + + K IP +++ +L+ L+LS NR G
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK---DIP-NLTALVRLEELELSGNRLDLIRPGS 197
Query: 287 FPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGF 323
F Q L SL + ++ + FDDL EL
Sbjct: 198 F-QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 535 LVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWI------SEGHAHQSLTWTQRISA 588
++ L CF+ ++ R++ + EYV G L I E HA +
Sbjct: 403 FLTQLHSCFQ------TMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHA---------VFY 447
Query: 589 AIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
A +A G+ FL + G+ +LK+ +++LD KI+ + +
Sbjct: 448 AAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGM 488
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 61
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ + L+ ++ + A + S
Sbjct: 62 LNHPNIVKLLDVI-------HTENKLYLVFEFL-SMDLKKFM-DASALTGIPLPLIKSYL 112
Query: 590 IGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 113 FQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGL 152
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 195 LPDSFSYLENLRVLALSNNHFYG----EVPDFSGLTYLQVL-DLENNALGPQFPKVGKKL 249
LP L L+ L LS NHF +F LT+L + +++ LG + L
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 250 VTMILSKNKFRSA--IPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKL 307
T+ LS N ++ ++ + LQ L+LS N +G QA P + L++A +L
Sbjct: 350 QTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL 409
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 178 LPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNN-------HFYGEVPDFSGLTYLQV 230
LP L L L +N +F YL LR L L NN + + VP L ++
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 231 LDLENNALGPQFPKVGKKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRF----VGP 286
LE + V + + + + K IP +++ +L+ L+LS NR G
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK---DIP-NLTALVRLEELELSGNRLDLIRPGS 197
Query: 287 FPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGF 323
F Q L SL + ++ + FDDL EL
Sbjct: 198 F-QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 26 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 78
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 79 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 130
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 131 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 178
Query: 631 NL 632
Sbjct: 179 GF 180
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 181 LAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFY---------GEVPDFSGLTYLQVL 231
L +L L NN D LENL +L +N+ G V GL++L +L
Sbjct: 482 LTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHIL 541
Query: 232 DLENNAL 238
+LE+N L
Sbjct: 542 NLESNGL 548
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 60
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ + L+ ++ + A + S
Sbjct: 61 LNHPNIVKLLDVI-------HTENKLYLVFEFL-SMDLKDFM-DASALTGIPLPLIKSYL 111
Query: 590 IGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 112 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 151
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 247
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 248 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 304 LKNLTYLTLYFNNISD 319
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 246
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 247 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 302
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 303 LKNLTYLTLYFNNISD 318
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 475 ATNNFDTSAFMGEGSQGQMYRGRLK-NGTFVAIRCLKM----KKCHSTRNFMHHIELISK 529
+ NF +GEG+ G +Y+ R K G VA++ +++ + ST + I L+ +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA--IREISLLKE 59
Query: 530 LRHRHLVSALGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAA 589
L H ++V L + ++++L+FE++ + L+ ++ + A + S
Sbjct: 60 LNHPNIVKLLDVI-------HTENKLYLVFEFL-SMDLKKFM-DASALTGIPLPLIKSYL 110
Query: 590 IGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSYNL 632
+ +G+ F H+ V +LK ++L++ K++ + L
Sbjct: 111 FQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGL 150
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEYSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEYSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
E HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FXEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
E HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FXEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 247
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 248 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 304 LKNLTYLTLYFNNISD 319
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPD--FSGLTYLQVLD 232
L +L L L+L N G +F L +L ++ H + + P F L L+VL+
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 233 LENNALGP--QFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLD---LSSNRFVGP 286
L + L Q G + L + L N F+ ++ + + L+ LSS +
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 287 FPQALLSLPSITYLNIADNKLTGKLFDDLSCNPELGFVDLSSNLLTGQLPNCLLAGSKNR 346
QA L ++ +L+++ N LTG D LS L +++++SN + P+ L A S+
Sbjct: 491 DQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQS 549
Query: 347 VVLYARNCLAAGNENQHPLSF 367
++ + N L N H +++
Sbjct: 550 IINLSHNPLDCTCSNIHFITW 570
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHFAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEYSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
E HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 138 FXEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|4HVM|A Chain A, Crystal Structure Of Tallysomycin Biosynthesis Protein
Tlmii
pdb|4HVM|B Chain B, Crystal Structure Of Tallysomycin Biosynthesis Protein
Tlmii
pdb|4HVM|C Chain C, Crystal Structure Of Tallysomycin Biosynthesis Protein
Tlmii
pdb|4HVM|D Chain D, Crystal Structure Of Tallysomycin Biosynthesis Protein
Tlmii
Length = 493
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 41 GLLNNPAVLSSWNITTEFCNTEPTSSLT 68
G++ P V + W++ C P+SSLT
Sbjct: 346 GVVTPPRVAARWDVAVHLCRNAPSSSLT 373
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 250
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 251 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 306
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 307 LKNLTYLTLYFNNISD 322
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 251
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 308 LKNLTYLTLYFNNISD 323
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 54 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 106
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EYVP G + S +
Sbjct: 107 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYVPGGEMFSHLRRIGR 158
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++L+DQ +++ +
Sbjct: 159 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDF 206
Query: 631 NL 632
Sbjct: 207 GF 208
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 175 LGSLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLE 234
L L L L NN + P L NL L+L+ N ++ + LT L LDL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLA 246
Query: 235 NNALGPQFPKVG-KKLVTMILSKNKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
NN + P G KL + L N+ + P ++ L L+L+ N+ P + +
Sbjct: 247 NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 302
Query: 294 LPSITYL-----NIAD 304
L ++TYL NI+D
Sbjct: 303 LKNLTYLTLYFNNISD 318
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 485 MGEGSQGQMYRGRLKN----GTFVAIRCLKMKKC--HSTRNFMHHIELISKLRHRHLVSA 538
+GEG G++Y G N VA++ K K C + FM ++ L H H+V
Sbjct: 16 LGEGFFGEVYEGVYTNHKGEKINVAVKTCK-KDCTLDNKEKFMSEAVIMKNLDHPHIVKL 74
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG-HAHQSLT---WTQRISAAIGVAK 594
+G E ++I E P G L ++ ++ + LT ++ +I A+ +
Sbjct: 75 IGIIEE--------EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE 126
Query: 595 GIQFLHTGI 603
I +H I
Sbjct: 127 SINCVHRDI 135
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 485 MGEGSQGQMYRGRLKN----GTFVAIRCLKMKKC--HSTRNFMHHIELISKLRHRHLVSA 538
+GEG G++Y G N VA++ K K C + FM ++ L H H+V
Sbjct: 32 LGEGFFGEVYEGVYTNHKGEKINVAVKTCK-KDCTLDNKEKFMSEAVIMKNLDHPHIVKL 90
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEG-HAHQSLT---WTQRISAAIGVAK 594
+G E ++I E P G L ++ ++ + LT ++ +I A+ +
Sbjct: 91 IGIIEE--------EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE 142
Query: 595 GIQFLHTGI 603
I +H I
Sbjct: 143 SINCVHRDI 151
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 20/162 (12%)
Query: 485 MGEGSQGQMYRGRLKN----GTFVAIRCLKMKKC--HSTRNFMHHIELISKLRHRHLVSA 538
+GEG G++Y G N VA++ K K C + FM ++ L H H+V
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCK-KDCTLDNKEKFMSEAVIMKNLDHPHIVKL 78
Query: 539 LGHCFECYFDDSSVSRIFLIFEYVPNGTLRSWISEGHAHQSLTWTQRISAAIGVAKGIQF 598
+G E ++I E P G L ++ SL + ++ + K + +
Sbjct: 79 IGIIEE--------EPTWIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 128
Query: 599 LHTGIVPGVFSNNLKITDILLDQNLVAKISSYNLPLLAENAE 640
L + ++ + +IL+ K+ + L E+ +
Sbjct: 129 LES---INCVHRDIAVRNILVASPECVKLGDFGLSRYIEDED 167
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 199 FSYLENLRVLALSNNHFYGEVPD-FSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSKN 257
F L +L L L N G P+ F G +++Q L L +N
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL---------------------GEN 88
Query: 258 KFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADN 305
K + +QL+ L+L N+ P + L S+T LN+A N
Sbjct: 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 32/138 (23%)
Query: 199 FSYLENLRVLALSNN--HFYGEVPDFSGLTYLQVLDLENNALGPQFPKVGKKLVTMILSK 256
YL N+R LAL N H + + + LTYL IL+
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYL------------------------ILTG 94
Query: 257 NKFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLSLPSITYLNIADNKLTG---KLFD 313
N+ +S L+ L L N+ L ++TYLN+A N+L +FD
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154
Query: 314 DLSCNPELGFVDLSSNLL 331
L+ EL DLS N L
Sbjct: 155 KLTNLTEL---DLSYNQL 169
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ +++ +
Sbjct: 138 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIQVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 199 FSYLENLRVLALSNNHFYGEVPDFSGLTYLQVLDLENNALGPQFPKVG-KKLVTMILSKN 257
+ L NL+VL L N P +GLT LQ L + NN + P KL T+ N
Sbjct: 131 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDN 189
Query: 258 KFRSAIPAEVSSYYQLQRLDLSSNRFVGPFPQALLS 293
K P ++S L + L N+ P A LS
Sbjct: 190 KISDISP--LASLPNLIEVHLKDNQISDVSPLANLS 223
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 33 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 85
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 86 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 137
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
E HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 138 FXEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 185
Query: 631 NL 632
Sbjct: 186 GF 187
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M ++ G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLTKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
E HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 139 FXEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 38/182 (20%)
Query: 462 PAYRTFSLEELEEATNNFDTSAFMGEGSQGQ-MYRGRLKNGTFVAIRCLKMKKCHSTRNF 520
PA T L++ E +G GS G+ M + G A++ L +K +
Sbjct: 34 PAQNTAHLDQFERIKT-------LGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQI 86
Query: 521 MHHIELISKLRHRHLVSALGHCF----ECYFDDSSVSRIFLIFEYVPNGTLRSWI----- 571
H L + ++ A+ F E F D+S ++++ EY P G + S +
Sbjct: 87 EH------TLNEKRILQAVNFPFLVKLEFSFKDNS--NLYMVMEYAPGGEMFSHLRRIGR 138
Query: 572 -SEGHAHQSLTWTQRISAAIGVAKGIQFLHTGIVPGVFSNNLKITDILLDQNLVAKISSY 630
SE HA R AA + ++LH+ + +LK ++++DQ K++ +
Sbjct: 139 FSEPHA--------RFYAA-QIVLTFEYLHS---LDLIYRDLKPENLMIDQQGYIKVTDF 186
Query: 631 NL 632
Sbjct: 187 GF 188
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 580 LTWTQRISAAIGVAKGIQFLH--------TGIVPGVFSNNLKITDILLDQNLVAKISSYN 631
+TW + A +++G+ +LH G P + + K ++LL +L A ++ +
Sbjct: 109 ITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFG 168
Query: 632 LPLLAENAEKVG 643
L + E + G
Sbjct: 169 LAVRFEPGKPPG 180
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 177 SLPILAVLSLRNNMFNGTLPDSFSYLENLRVLALSNNHFYG-EVPDFSGLTYLQVL-DLE 234
S P L VL L ++ L +L L L+ N + FSGL+ LQ L LE
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 235 NNALGPQFPKVG--KKLVTMILSKNKFRS-AIPAEVSSYYQLQRLDLSSNR 282
N + +G K L + ++ N +S +P S+ L+ LDLSSN+
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,344,237
Number of Sequences: 62578
Number of extensions: 669589
Number of successful extensions: 2066
Number of sequences better than 100.0: 425
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 566
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)