Query 006146
Match_columns 659
No_of_seqs 126 out of 141
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e52_A Excinuclease ABC subuni 96.8 0.00093 3.2E-08 55.1 4.2 38 108-145 21-58 (63)
2 2d7d_A Uvrabc system protein B 92.7 0.071 2.4E-06 59.3 4.2 38 107-144 622-659 (661)
3 1c4o_A DNA nucleotide excision 87.7 0.1 3.5E-06 58.0 0.0 39 107-145 607-645 (664)
4 1e52_A Excinuclease ABC subuni 84.9 0.42 1.5E-05 39.3 2.2 26 148-173 26-51 (63)
5 2ca6_A RAN GTPase-activating p 64.8 3.6 0.00012 41.0 3.0 23 302-326 289-311 (386)
6 3pxg_A Negative regulator of g 56.7 7.7 0.00026 41.1 4.0 41 104-144 394-434 (468)
7 1gp8_A Protein (scaffolding pr 55.0 7.7 0.00026 29.7 2.6 29 113-141 10-38 (40)
8 2d7d_A Uvrabc system protein B 41.1 11 0.00039 41.8 2.4 29 146-174 626-654 (661)
9 2ca6_A RAN GTPase-activating p 36.3 8 0.00028 38.4 0.2 8 26-33 33-40 (386)
10 1loi_A Cyclic 3',5'-AMP specif 34.9 6.7 0.00023 27.1 -0.4 8 177-184 15-22 (26)
11 3isg_A Penicillinase, beta-lac 33.5 18 0.00062 35.9 2.2 56 151-206 168-232 (251)
12 3kf9_B MLCK2, myosin light cha 33.2 24 0.00082 24.0 2.0 16 97-112 2-17 (22)
13 3g4p_A Beta-lactamase OXA-24; 32.8 12 0.0004 37.1 0.8 50 150-200 165-220 (244)
14 1xl3_C Protein type A, secreti 32.7 23 0.00079 31.3 2.5 29 101-129 58-86 (92)
15 1c4o_A DNA nucleotide excision 29.2 12 0.00039 41.8 0.0 28 146-173 611-638 (664)
16 3hho_A CO-chaperone protein HS 24.7 1.1E+02 0.0038 28.6 5.9 21 150-170 131-151 (174)
17 1j0g_A Hypothetical protein 18 24.4 24 0.00081 30.9 1.1 13 2-14 56-68 (92)
No 1
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=96.83 E-value=0.00093 Score=55.07 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=34.8
Q ss_pred HHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006146 108 QAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (659)
Q Consensus 108 ~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~ 145 (659)
+...++..|+.+|..|++.++||.||+||+.|.+++..
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999998753
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.68 E-value=0.071 Score=59.27 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=27.5
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006146 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS 144 (659)
Q Consensus 107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~ 144 (659)
++...++..|+.+|..|++.+|||+||+||+.|.+++.
T Consensus 622 ~~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 35566778888888888888888888888888888764
No 3
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.75 E-value=0.1 Score=58.03 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhcC
Q 006146 107 EQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAASK 145 (659)
Q Consensus 107 e~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~~ 145 (659)
++.+..+..|+.+|.+|++.++||.||+||+.|.+++..
T Consensus 607 ~~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~ 645 (664)
T 1c4o_A 607 EDLRERIAELELAMWQAAEALDFERAARLRDEIRALEAR 645 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 456777888999999999999999999999999888764
No 4
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=84.90 E-value=0.42 Score=39.34 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcc
Q 006146 148 VAEIMAQLKNAIDEERYHDASRLCRY 173 (659)
Q Consensus 148 V~~~~~~Lk~AI~EERY~DAA~lRD~ 173 (659)
+..+..+|+.|.++++|+.||+|||.
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~ 51 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQ 51 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45677899999999999999999996
No 5
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=64.76 E-value=3.6 Score=40.95 Aligned_cols=23 Identities=17% Similarity=0.606 Sum_probs=14.0
Q ss_pred hhhHHHHHhhhccCCCceeEEEEec
Q 006146 302 EGIKSVINFLKEKIPGLKVKVMNID 326 (659)
Q Consensus 302 EGi~~~~nflkd~IP~~KvKVlkV~ 326 (659)
+|+..+...++...|.+ +.|++.
T Consensus 289 ~g~~~l~~~l~~~l~~L--~~L~l~ 311 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDL--LFLELN 311 (386)
T ss_dssp HHHHHHHHHHHHHCTTC--CEEECT
T ss_pred HHHHHHHHHHHhcCCCc--eEEEcc
Confidence 46666777666666654 456654
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.65 E-value=7.7 Score=41.08 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=36.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhc
Q 006146 104 SEIEQAESYASLLKFQLEDAIEREDFEEAANLKNAIAEAAS 144 (659)
Q Consensus 104 ~~ve~~e~~~~~Lk~QLe~Av~~EDy~eAArLK~ai~~~~~ 144 (659)
.+|++.++.+..|+.+++.|+..+||+.|+.|+..+..++.
T Consensus 394 ~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~ 434 (468)
T 3pxg_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLRE 434 (468)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 35788888999999999999999999999999998887553
No 7
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=55.03 E-value=7.7 Score=29.67 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 006146 113 ASLLKFQLEDAIEREDFEEAANLKNAIAE 141 (659)
Q Consensus 113 ~~~Lk~QLe~Av~~EDy~eAArLK~ai~~ 141 (659)
.+.|++||..|....||+.+-.|+..|+.
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46799999999999999999999987753
No 8
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=41.11 E-value=11 Score=41.80 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhhhhhhhhhhhhhccc
Q 006146 146 DTVAEIMAQLKNAIDEERYHDASRLCRYT 174 (659)
Q Consensus 146 D~V~~~~~~Lk~AI~EERY~DAA~lRD~a 174 (659)
..+.++..+|++|.+++.|+.||+|||+-
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i 654 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLL 654 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34667888999999999999999999973
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=36.31 E-value=8 Score=38.41 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=4.0
Q ss_pred cceeeccc
Q 006146 26 RFQCLDLS 33 (659)
Q Consensus 26 ~~~~~~~~ 33 (659)
..+.|+|+
T Consensus 33 ~L~~L~L~ 40 (386)
T 2ca6_A 33 SVKEIVLS 40 (386)
T ss_dssp CCCEEECT
T ss_pred CccEEECC
Confidence 34555554
No 10
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.90 E-value=6.7 Score=27.11 Aligned_cols=8 Identities=63% Similarity=1.435 Sum_probs=6.1
Q ss_pred cceeeeee
Q 006146 177 GLVGWWVG 184 (659)
Q Consensus 177 GLvGWW~G 184 (659)
=|||||--
T Consensus 15 wlvgwwdq 22 (26)
T 1loi_A 15 WLVGWWDQ 22 (26)
T ss_dssp TGGGGHHH
T ss_pred hhhhhHHH
Confidence 48999953
No 11
>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine carboxylation, antibiotic resistance; HET: KCX DRW; 1.40A {Escherichia coli} SCOP: e.3.1.1 PDB: 1m6k_A*
Probab=33.54 E-value=18 Score=35.95 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcccCCcc-------eeeeeec-cCCCCCCcceEEEee-cCCcee
Q 006146 151 IMAQLKNAIDEERYHDASRLCRYTGSGL-------VGWWVGY-SKDSDDPFGRLIQIK-PGVGRF 206 (659)
Q Consensus 151 ~~~~Lk~AI~EERY~DAA~lRD~aGaGL-------vGWW~G~-s~d~~DP~G~IirIs-p~~GRy 206 (659)
.+..+++.+..+.-.+-.+++=+||+|- .|||+|+ ..-.+.+|=..+.|. |..|.|
T Consensus 168 ~~~~v~~~m~~~~~~~g~~v~GKTGTa~~~~~~~~~gWFvG~vap~~~p~~~~av~ie~~~~~~~ 232 (251)
T 3isg_A 168 AIENTIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSALTGNLGSNL 232 (251)
T ss_dssp HHHHHHHHTEEEECTTSCEEEEEEEEEECTTSSCEEEEEEEEEECTTCCEEEEEEEEEECCTTSC
T ss_pred HHHHHHHhheeeecCCCeEEEEEecCcccCCCCCceEEEEEEEEEcCCCeEEEEEEEEcCCCCcc
Confidence 3444455443332224456888899764 7999999 776666654444443 334444
No 12
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=33.18 E-value=24 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.827 Sum_probs=12.8
Q ss_pred hHHHhhhhHHHHHhhH
Q 006146 97 NRWTRHFSEIEQAESY 112 (659)
Q Consensus 97 ~rW~rhF~~ve~~e~~ 112 (659)
-||++||+.|-.+-+|
T Consensus 2 ~~WkK~f~av~Aanrl 17 (22)
T 3kf9_B 2 RRWKKNFIAVSAANRF 17 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3899999999776655
No 13
>3g4p_A Beta-lactamase OXA-24; B-lactamases, enzyme mechanism, carbapenem, resistance, HYDR; HET: KCX; 1.97A {Acinetobacter baumannii} PDB: 2jc7_A* 3fyz_A* 3fzc_A* 3fv7_A* 3mbz_A* 3pae_A* 3pag_A*
Probab=32.83 E-value=12 Score=37.09 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcccCCcc-----eeeeeeccCCCCCC-cceEEEee
Q 006146 150 EIMAQLKNAIDEERYHDASRLCRYTGSGL-----VGWWVGYSKDSDDP-FGRLIQIK 200 (659)
Q Consensus 150 ~~~~~Lk~AI~EERY~DAA~lRD~aGaGL-----vGWW~G~s~d~~DP-~G~IirIs 200 (659)
+.+..+++++..|+ .+-.+++=+||+|- .|||+|+.+..++| |=-.++|.
T Consensus 165 ~~~~~v~~~m~~~~-~~g~~~~GKTGta~~~~~~~gwfvG~~~~~~~~~~~fa~~i~ 220 (244)
T 3g4p_A 165 ETQEEVKKMLLIKE-VNGSKIYAKSGWGMGVTPQVGWLTGWVEQANGKKIPFSLNLE 220 (244)
T ss_dssp HHHHHHHHTTEEEE-ETTEEEEEEEEEECSSSSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHHHHHHHHHhhhc-cCCeeEEeEEeccccCCCCcEEEEEEEEcCCCCEEEEEEEec
Confidence 34555666555444 45567888999985 79999999886666 32334454
No 14
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=32.65 E-value=23 Score=31.29 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=26.4
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHhhhcH
Q 006146 101 RHFSEIEQAESYASLLKFQLEDAIEREDF 129 (659)
Q Consensus 101 rhF~~ve~~e~~~~~Lk~QLe~Av~~EDy 129 (659)
.-|++.|+..+++.+.+.-|..||++||=
T Consensus 58 ~vf~d~e~R~~lL~a~Q~AlD~aI~~Ede 86 (92)
T 1xl3_C 58 GVFSDEEQRQNLLQMCQNAIDMAIESEEE 86 (92)
T ss_dssp GGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999973
No 15
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=29.23 E-value=12 Score=41.80 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 006146 146 DTVAEIMAQLKNAIDEERYHDASRLCRY 173 (659)
Q Consensus 146 D~V~~~~~~Lk~AI~EERY~DAA~lRD~ 173 (659)
.-+.++..+|++|.+++.|+.||+|||+
T Consensus 611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~ 638 (664)
T 1c4o_A 611 ERIAELELAMWQAAEALDFERAARLRDE 638 (664)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3466788899999999999999999997
No 16
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=24.71 E-value=1.1e+02 Score=28.64 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhh
Q 006146 150 EIMAQLKNAIDEERYHDASRL 170 (659)
Q Consensus 150 ~~~~~Lk~AI~EERY~DAA~l 170 (659)
.+...|..|++.+.|+.|+.+
T Consensus 131 ~~~~~l~~~~~~~d~~~A~~~ 151 (174)
T 3hho_A 131 HYLAQLQGQLAQSEWLAAADQ 151 (174)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH
Confidence 556667777777777777643
No 17
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=24.44 E-value=24 Score=30.94 Aligned_cols=13 Identities=69% Similarity=1.086 Sum_probs=11.7
Q ss_pred eeecCCccccccc
Q 006146 2 IITNNGWGITPAT 14 (659)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (659)
||||.|.||.|+.
T Consensus 56 iiT~dGiGInP~Q 68 (92)
T 1j0g_A 56 IITNDGIGINPAQ 68 (92)
T ss_dssp EECTTSCCCCCSS
T ss_pred EEecCCcccChhh
Confidence 8999999999963
Done!