Query 006148
Match_columns 659
No_of_seqs 46 out of 48
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 19:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01843 DIL: DIL domain; Int 96.9 0.00029 6.3E-09 60.7 0.4 99 510-652 1-99 (105)
2 PF02007 MtrH: Tetrahydrometha 54.9 8.2 0.00018 41.1 2.2 45 539-584 183-240 (296)
3 PF07334 IFP_35_N: Interferon- 50.7 22 0.00048 31.4 3.8 25 255-279 4-28 (76)
4 TIGR03114 cas_csf1 CRISPR-asso 35.9 23 0.00051 36.0 1.9 31 494-524 28-72 (202)
5 PRK14127 cell division protein 35.8 95 0.0021 28.9 5.7 56 254-314 40-103 (109)
6 PRK14143 heat shock protein Gr 25.0 2.6E+02 0.0056 29.0 7.2 20 257-276 66-85 (238)
7 PF05377 FlaC_arch: Flagella a 24.2 1E+02 0.0023 26.0 3.5 33 254-290 17-49 (55)
8 PF08181 DegQ: DegQ (SacQ) fam 24.1 1.1E+02 0.0025 24.9 3.6 23 257-279 3-25 (46)
9 PF01004 Flavi_M: Flavivirus e 23.2 58 0.0012 28.7 1.9 22 411-432 16-37 (75)
10 PF15249 GLTSCR1: Glioma tumor 22.6 42 0.00092 30.2 1.1 54 484-537 24-89 (109)
11 PRK00979 tetrahydromethanopter 22.2 49 0.0011 35.5 1.6 59 514-580 161-240 (308)
12 PF14389 Lzipper-MIP1: Leucine 21.5 2.2E+02 0.0049 25.1 5.3 50 256-305 6-59 (88)
No 1
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=96.87 E-value=0.00029 Score=60.71 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=77.9
Q ss_pred HHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCC
Q 006148 510 MVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPK 589 (659)
Q Consensus 510 lVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~ 589 (659)
+++.|..--+++-.||.++-... -.++-.|+|+|.-|..-..|... -|+...
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~-----------------------~~~~~~g~qi~~nls~l~~W~~~-~~l~~~---- 52 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRK-----------------------YCSWSKGVQIRYNLSELEDWARS-HGLEEA---- 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS------------------------B-HHHHHHHHHHHHHHHHCCCC-TTSTTH----
T ss_pred CHHHHHHHHHHHHHHHHHHCCCC-----------------------ccccccHHHHHHHHHHHHHHHHh-cccchh----
Confidence 46788889999999999985432 17899999999999999999765 222111
Q ss_pred ccCCCCCCCCCCCCCCCCccccchhhhhcccccchhhccCcchhhhhccccChhHHHHHHhHh
Q 006148 590 EDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFV 652 (659)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCPs~~lpLIkRiL~~v 652 (659)
....|.-|..+++||++||..+.|-.+++++||.++..-|++||.+.
T Consensus 53 ----------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y 99 (105)
T PF01843_consen 53 ----------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQIRKILSNY 99 (105)
T ss_dssp -----------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHHHHHHHCCB
T ss_pred ----------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHHHHHHHHhC
Confidence 13588999999999999999999999999999999999999999764
No 2
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=54.92 E-value=8.2 Score=41.07 Aligned_cols=45 Identities=22% Similarity=0.680 Sum_probs=34.9
Q ss_pred CCCCCcCCCccccccCCC-------------cccccccccccchhchHHHHHhhcCCCC
Q 006148 539 PVSDPILDSKVLPIPAGD-------------LSFGSGAQLKNSVGNWSRWLTDMFGMDT 584 (659)
Q Consensus 539 PiSDPI~DskVLPIPaG~-------------lSFGaGAQLKNaIGnWSRwLtDlfGid~ 584 (659)
=|..||+|+.|+|+|.|. +.+=.|.-.-|+...| .||.++.+-..
T Consensus 183 GI~~~LvD~~v~plgsg~g~s~r~~~~vK~~~G~P~G~a~hN~~s~W-~wlr~~~k~~~ 240 (296)
T PF02007_consen 183 GIENPLVDTAVTPLGSGAGISIRAIFAVKAKFGYPVGCAIHNAPSAW-KWLREYKKKEG 240 (296)
T ss_pred CCcceeecccccCCcccchHHHHHHHHHHHHhCCCcccccccchhHH-HHHHHhccccc
Confidence 477899999999999975 2222455567999999 99999876544
No 3
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.71 E-value=22 Score=31.43 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 006148 255 NLNQKIEEMELRIEKLEEELRDVAA 279 (659)
Q Consensus 255 ~~~~k~eele~rie~LE~ELREaAA 279 (659)
.+..++.+|+.+|.+||.||.+...
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778899999999999999766
No 4
>TIGR03114 cas_csf1 CRISPR-associated protein, Csf1 family. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf1 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies closest to the repeats.
Probab=35.86 E-value=23 Score=36.00 Aligned_cols=31 Identities=29% Similarity=0.655 Sum_probs=25.6
Q ss_pred CCCCCCCcc-chHHHHHHHHHHH-------------HHHhHHHHH
Q 006148 494 VRAGGHECG-CLPVLGRMVMEQC-------------VARLDVAMF 524 (659)
Q Consensus 494 vRAgGHECG-CLPVLaRlVMEQC-------------VaRLDVAMF 524 (659)
-|.|+|-|| |+|++++-.|.+- +.+-|||-|
T Consensus 28 ~r~g~~vCG~C~al~skd~mq~y~ksi~~e~Gvf~~~sn~~va~~ 72 (202)
T TIGR03114 28 ARGGGMVCGHCTALMSKDMLQAYAKSIFSEGGVFPFASNVDVARG 72 (202)
T ss_pred ccCCCeeecccHHHhhHHHHHHHhhheeecCcccccccHHHHHHH
Confidence 379999999 9999999988874 567788765
No 5
>PRK14127 cell division protein GpsB; Provisional
Probab=35.75 E-value=95 Score=28.91 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCch--------hhhhhHHHHHHhc
Q 006148 254 ANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSP--------ARRLSRIYIHACK 314 (659)
Q Consensus 254 ~~~~~k~eele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtP--------ARRLSRlYiHAcK 314 (659)
..+..++.+|+.++..|+++|.+.-+ .++-|.-..++ ++.-.+ .+|||||=-|-+.
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~-~~~~~~~~~~~----~~~~~~~~~tn~DiLKRls~LEk~VFg 103 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTK-QVSVGASSSSV----ATTQPSSSATNYDILKRLSNLEKHVFG 103 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc----cccCCCCCcchHHHHHHHHHHHHHHhc
Confidence 45566777788888888888877655 44433322221 111111 5899999777654
No 6
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.97 E-value=2.6e+02 Score=29.03 Aligned_cols=20 Identities=25% Similarity=0.601 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 006148 257 NQKIEEMELRIEKLEEELRD 276 (659)
Q Consensus 257 ~~k~eele~rie~LE~ELRE 276 (659)
...+++|+.+|+.|++|+.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~e 85 (238)
T PRK14143 66 AARLAQLEQELESLKQELEE 85 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666554
No 7
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.24 E-value=1e+02 Score=25.97 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 006148 254 ANLNQKIEEMELRIEKLEEELRDVAALEISLYSVVPE 290 (659)
Q Consensus 254 ~~~~~k~eele~rie~LE~ELREaAAlEvsLYSVVaE 290 (659)
..+...++++...|+++++=.+++ ++||-||+.
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~l----l~lYE~Vs~ 49 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDL----LSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc
Confidence 356777888888888888888887 578998864
No 8
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=24.08 E-value=1.1e+02 Score=24.91 Aligned_cols=23 Identities=35% Similarity=0.591 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 006148 257 NQKIEEMELRIEKLEEELRDVAA 279 (659)
Q Consensus 257 ~~k~eele~rie~LE~ELREaAA 279 (659)
.++||||.+-+=+||-|+||..+
T Consensus 3 k~~ieelkqll~rle~eirett~ 25 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTD 25 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999865
No 9
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=23.20 E-value=58 Score=28.71 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.1
Q ss_pred CCcccchhHHHHHHhhhhhhhh
Q 006148 411 DEDWQEMGTFIAALQKVESWIF 432 (659)
Q Consensus 411 ~~dW~e~~Tf~~ALeKvEsWIF 432 (659)
.+-|-+......-|.|||.||.
T Consensus 16 ~~~Wl~~~~~~~hl~rvE~Wil 37 (75)
T PF01004_consen 16 GETWLDSDSAWKHLTRVESWIL 37 (75)
T ss_pred CcccccCccHHHHHHHHHHHHh
Confidence 4678888888899999999985
No 10
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=22.62 E-value=42 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHhcCcCCCCCCCccchH---------HHHHHHHHHHHHHhH--HHHHHH-HhhhcCCCCCC
Q 006148 484 FQDALQKLCPVRAGGHECGCLP---------VLGRMVMEQCVARLD--VAMFNA-ILRESANEIPT 537 (659)
Q Consensus 484 F~dA~eRLCPvRAgGHECGCLP---------VLaRlVMEQCVaRLD--VAMFNA-ILRESa~eiPT 537 (659)
+.|||+||+|+.-=...=.=.. ....-++.+|+.|.. +.-||. ++|++....|+
T Consensus 24 ~~DA~~RLLPYHv~~~~~~~~~d~~~~~~~d~~~e~~~~~~~~~~~~~~~k~~~ll~re~~r~~~~ 89 (109)
T PF15249_consen 24 LEDAVERLLPYHVFQEPEEDEDDFEKASDWDEEFETVAAELLKRFEKMLNKYRRLLLRESMRDSPS 89 (109)
T ss_pred HHHHHHHhcchhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 5899999999853221111111 134456667888877 334664 45666656663
No 11
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=22.16 E-value=49 Score=35.50 Aligned_cols=59 Identities=22% Similarity=0.514 Sum_probs=40.7
Q ss_pred HHHHHhHHHHH---------HHHhhhcCCCCCCCCCCCCcCCCccccccCC------------Ccccccccccccchhch
Q 006148 514 QCVARLDVAMF---------NAILRESANEIPTDPVSDPILDSKVLPIPAG------------DLSFGSGAQLKNSVGNW 572 (659)
Q Consensus 514 QCVaRLDVAMF---------NAILRESa~eiPTDPiSDPI~DskVLPIPaG------------~lSFGaGAQLKNaIGnW 572 (659)
-+=.||.++.- -.++ ....| .|||.|+-||||+++ .+.+-.|.-|-|.-..|
T Consensus 161 t~e~Rl~i~~~~~~~~~~gll~~a--~~~GI-----~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt~~GlSNiS~~w 233 (308)
T PRK00979 161 SVEGRLKMLEEGGKGQDKGMLPLA--EEAGI-----ERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPVGCAPHNAPSAW 233 (308)
T ss_pred CHHHHHHHHHhccccchHHHHHHH--HHcCC-----CcEEeccCCCcCccHHHHHHHHHHHHHHcCCCeEEEEeCCchHH
Confidence 66677777763 3333 34455 499999999999643 23445555678988888
Q ss_pred HHHHHhhc
Q 006148 573 SRWLTDMF 580 (659)
Q Consensus 573 SRwLtDlf 580 (659)
. ||.+++
T Consensus 234 ~-~lk~~~ 240 (308)
T PRK00979 234 D-WLREFK 240 (308)
T ss_pred H-HHHHhc
Confidence 4 999876
No 12
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.53 E-value=2.2e+02 Score=25.11 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH----HHHHHhhhhcccccCCCCccccCchhhhh
Q 006148 256 LNQKIEEMELRIEKLEEELRD----VAALEISLYSVVPEHGSSAHKVHSPARRL 305 (659)
Q Consensus 256 ~~~k~eele~rie~LE~ELRE----aAAlEvsLYSVVaEHGSSshKvHtPARRL 305 (659)
..++...||..|.+|+..|++ -+|||-||.--..-+-++.+-+=.+|+.|
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keL 59 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKEL 59 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHH
Confidence 344445566666655555554 47888888543333434445555555543
Done!