Query 006148
Match_columns 659
No_of_seqs 46 out of 48
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 97.9 1.6E-05 5.5E-10 82.2 7.5 269 295-652 44-327 (419)
2 3mmi_A Myosin-4; globular tail 96.9 0.0027 9.1E-08 66.4 9.0 286 261-653 17-311 (386)
3 2lme_A Adhesin YADA; trimeric 47.8 20 0.00068 31.0 4.5 33 255-287 13-45 (105)
4 1a93_B MAX protein, coiled coi 28.3 58 0.002 24.3 3.6 23 253-275 9-31 (34)
5 3ra3_B P2F; coiled coil domain 27.7 58 0.002 23.2 3.3 24 255-281 4-27 (28)
6 1zme_C Proline utilization tra 25.6 59 0.002 24.7 3.4 19 259-277 45-63 (70)
7 2yy0_A C-MYC-binding protein; 23.6 96 0.0033 24.3 4.3 28 252-279 20-47 (53)
8 3fke_A Polymerase cofactor VP3 22.2 34 0.0012 31.5 1.7 33 482-532 26-60 (129)
9 1dip_A Delta-sleep-inducing pe 22.1 61 0.0021 27.9 3.1 31 251-281 15-48 (78)
10 2er8_A Regulatory protein Leu3 21.5 41 0.0014 25.9 1.8 21 257-277 48-68 (72)
11 2jx8_A Hpcif1, phosphorylated 21.2 17 0.00057 28.3 -0.5 24 524-547 29-52 (52)
12 4f2d_A L-arabinose isomerase; 20.8 52 0.0018 35.2 3.0 25 271-295 250-274 (500)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.6e-05 Score=82.20 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=168.8
Q ss_pred ccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeecc-cCC-CcchhhhhhhHHHHHHHH--HHHhcCCCCC
Q 006148 295 AHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKSC-GND-VSRLTFWLSNTIVLREII--CQAFGNSHNS 370 (659)
Q Consensus 295 shKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWLSN~vVLReII--sqa~g~s~~~ 370 (659)
.+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|.....
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~--- 120 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILT--- 120 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhc---
Confidence 455668998877666667777544444444444555544444555 467 588999999999999988 4443100
Q ss_pred CCcccccccCCCCCCCcCccccccccCCCCCcccCCccCCCCcccc----hhHHHHHHhhhhhhhhhhhhhhhhhc---c
Q 006148 371 TPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE----MGTFIAALQKVESWIFSRIVESVWWQ---A 443 (659)
Q Consensus 371 ~~~~~~~~~ng~~k~~~~~s~~~~wk~~~~~k~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ---a 443 (659)
|++ ...+ ....+|.+ ...|...|+-+.-.||+.++..+-=. .
T Consensus 121 ----------~~~-----~~~~----------------~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~ 169 (419)
T 2f6h_X 121 ----------EET-----FKNG----------------MTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKK 169 (419)
T ss_dssp ----------CCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCc-----cccc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 01134433 34566778888889999887554322 3
Q ss_pred cCCCccCCCC----CCCccCCCcCCCCCcccccCcchHHHHHHHHHHHHHhcCcCCCCCCCccchHHHHHHHHHHHHHHh
Q 006148 444 LTPHMQSPVG----STTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARL 519 (659)
Q Consensus 444 lTPhMQs~~~----~s~k~~g~~~~~~lgDq~QG~fSI~LWK~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRL 519 (659)
+.|-|+-+.. ...+..| +.+...+. +...+++-=-+-|...+..++ .|+==|.|.++++.|...=+
T Consensus 170 l~paIl~~~~~~~~~~~~~~~-~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~I 239 (419)
T 2f6h_X 170 AINAVVISESLPGFSAGETSG-FLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYV 239 (419)
T ss_dssp HHHHHTTSCSSTTTTC------------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccccccccc-cccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHH
Confidence 3455543321 1111111 11111221 122343332333333333332 35556999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhchHHHHHhhcCCCCCCCCCccCCCCCCCC
Q 006148 520 DVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDTDDSPKEDQDFTEDDD 599 (659)
Q Consensus 520 DVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfGid~~ds~~~~~~~~~~~~ 599 (659)
++-+||.||-.. +-.+|-.|.|+|--|..--.|+... |+.
T Consensus 240 n~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~~~~-~l~---------------- 279 (419)
T 2f6h_X 240 DAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWCKTH-GLT---------------- 279 (419)
T ss_dssp HHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------------
T ss_pred HHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHHHHc-CCh----------------
Confidence 999999998532 2478999999999999999999883 331
Q ss_pred CCCCCCCCccccchhhhhcccccchhhccCcchhhhhccccChhHHHHHHhHh
Q 006148 600 GQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMFV 652 (659)
Q Consensus 600 ~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCPs~~lpLIkRiL~~v 652 (659)
. ....|.=|..++.||.++|.-+.|-....++||.++..=|.|||...
T Consensus 280 ---~--a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y 327 (419)
T 2f6h_X 280 ---D--GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQY 327 (419)
T ss_dssp ---T--HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHC
T ss_pred ---h--HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhC
Confidence 0 11257788999999999999888888899999999999999999764
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0027 Score=66.41 Aligned_cols=286 Identities=13% Similarity=0.143 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCccccCchhhhhhHHHHHHhccccchhhhhhhhhhcceeEEEeec-c
Q 006148 261 EEMELRIEKLEEELRDVAALEISLYSVVPEHGSSAHKVHSPARRLSRIYIHACKHWTQNKRATIAKNSVSGLVLVAKS-C 339 (659)
Q Consensus 261 eele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKa-C 339 (659)
+||...++.+..+-.|+. |-=|.. ||.---+..=|-.||+=|.-.-=|+-|+.-..+--+.--++++++==+.+. =
T Consensus 17 ~el~~ll~d~~~~~~ei~--~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~ 93 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVT--EGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 93 (386)
T ss_dssp -CHHHHHHCHHHHHHHHH--HHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHH--HHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444432 222333 555445666788999999988888877764443222222222222222244 3
Q ss_pred cCC-CcchhhhhhhHHHHHHHHHHHhcCCCCCCCcccccccCCCCCCCcCccccccccCCCCCcccCCccCCCCcccc-h
Q 006148 340 GND-VSRLTFWLSNTIVLREIICQAFGNSHNSTPVTRISESNGFSKKSEGKSQSLKWKGGSGNKQLNGHLQFDEDWQE-M 417 (659)
Q Consensus 340 GND-VpRLTFWLSN~vVLReIIsqa~g~s~~~~~~~~~~~~ng~~k~~~~~s~~~~wk~~~~~k~~~~~~~~~~dW~e-~ 417 (659)
|.| ++...|||||+--|...|.-+-. . ...| .+++|.. .
T Consensus 94 ~~d~i~~g~FWLsN~~~l~sFv~~~q~-------~---~~~~-----------------------------~~d~y~~ll 134 (386)
T 3mmi_A 94 KDETMLGGIFWLSNLSRLPAFAANQKT-------L---YEAN-----------------------------GGDEKDKLT 134 (386)
T ss_dssp TTTHHHHHHHHHHHHTTHHHHHHHHHT-------T---C-------------------------------------CHHH
T ss_pred CccccccchHHHHhHHHHHHHHHHHHH-------H---HHcc-----------------------------ChhHHHHHH
Confidence 788 89999999999877775544431 0 0000 0233322 2
Q ss_pred hHHHHHHhhhhh----hhhhhhhhhhh--hcccCCCccCCCCCCCccCCCcCCCCCcccccCcchHHHHHHHHHHHHHhc
Q 006148 418 GTFIAALQKVES----WIFSRIVESVW--WQALTPHMQSPVGSTTKPIGKLLGPALGDQQQGSFSINLWKNAFQDALQKL 491 (659)
Q Consensus 418 ~Tf~~ALeKvEs----WIFSRIVESVW--WQalTPhMQs~~~~s~k~~g~~~~~~lgDq~QG~fSI~LWK~AF~dA~eRL 491 (659)
..+-.-|+.++- .||+-++..+= =|++.|-|-.. ..+++ ++ ....++++-=-+-|...+..|
T Consensus 135 ~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~~~------~~~k~----~~--~~~~~s~~~Il~~L~~~~~~L 202 (386)
T 3mmi_A 135 LIYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMV------LNEKL----FK--NSGDEKFAKLFTFLNEFDAVL 202 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH------TCGGG----SS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccccc------ccccc----cC--CCCccCHHHHHHHHHHHHHHH
Confidence 233445676677 78875554431 11223444111 12222 22 123455443333333333333
Q ss_pred CcCCCCCCCccchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCcCCCccccccCCCcccccccccccchhc
Q 006148 492 CPVRAGGHECGCLPVLGRMVMEQCVARLDVAMFNAILRESANEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGN 571 (659)
Q Consensus 492 CPvRAgGHECGCLPVLaRlVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGn 571 (659)
+ .|+==|.|.++++.|...=+++-+||.||-. .+-.+|-.|.|+|--|..
T Consensus 203 ~-------~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-----------------------r~~cs~s~G~qIr~NLs~ 252 (386)
T 3mmi_A 203 C-------KFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-----------------------CPALNWKYGYEVDRNIER 252 (386)
T ss_dssp H-------HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCBCHHHHHHHHHHHHH
T ss_pred H-------HcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-----------------------CcccCcchHHHHHhhHHH
Confidence 2 3455699999999999999999999999863 346899999999999999
Q ss_pred hHHHHHhhcCCCCCCCCCccCCCCCCCCCCCCCCCCccccchhhhhcccccchhhccCcchhhhhccccChhHHHHHHhH
Q 006148 572 WSRWLTDMFGMDTDDSPKEDQDFTEDDDGQDGVGEPKSFILLNSFSDLLMLPKDMLMDRSIRQEVNFIIKANLHLEFIMF 651 (659)
Q Consensus 572 WSRwLtDlfGid~~ds~~~~~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRkEVCPs~~lpLIkRiL~~ 651 (659)
--.|+.. |+.. + ...|.=|+.++.||-+||.-+.|-.+-.++||.++..=|.|||..
T Consensus 253 LEeW~~~--~l~~------------------a---~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 253 LVSWFEP--RIED------------------V---RPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAILLK 309 (386)
T ss_dssp HHHHHTT--TSSC------------------C---GGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHT
T ss_pred HHHHHHh--ccHH------------------H---HHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 9999987 4321 1 136888999999999999888888777899999999999999976
Q ss_pred hh
Q 006148 652 VF 653 (659)
Q Consensus 652 v~ 653 (659)
.-
T Consensus 310 Y~ 311 (386)
T 3mmi_A 310 YK 311 (386)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 3
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=47.76 E-value=20 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006148 255 NLNQKIEEMELRIEKLEEELRDVAALEISLYSV 287 (659)
Q Consensus 255 ~~~~k~eele~rie~LE~ELREaAAlEvsLYSV 287 (659)
...+++.+|..||++++.|++-.+|.=++|=.+
T Consensus 13 ~~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 13 KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 347899999999999999999999998888554
No 4
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=28.30 E-value=58 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 006148 253 EANLNQKIEEMELRIEKLEEELR 275 (659)
Q Consensus 253 ~~~~~~k~eele~rie~LE~ELR 275 (659)
+.+..+.|++|+.+...||+++|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 46778899999999999999987
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.73 E-value=58 Score=23.17 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006148 255 NLNQKIEEMELRIEKLEEELRDVAALE 281 (659)
Q Consensus 255 ~~~~k~eele~rie~LE~ELREaAAlE 281 (659)
.+.||+..|+++|..||-| .||||
T Consensus 4 rlkqknarlkqeiaaleye---iaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE---IAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHHhhhHHHHHHHHHHHH---HHHhc
Confidence 3566777777777777654 35655
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.64 E-value=59 Score=24.70 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 006148 259 KIEEMELRIEKLEEELRDV 277 (659)
Q Consensus 259 k~eele~rie~LE~ELREa 277 (659)
.+++|+.+|..||.+|...
T Consensus 45 ~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3777888888888877654
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.60 E-value=96 Score=24.33 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006148 252 DEANLNQKIEEMELRIEKLEEELRDVAA 279 (659)
Q Consensus 252 ~~~~~~~k~eele~rie~LE~ELREaAA 279 (659)
+-.+|.+++.+|+.|++.|.+++.|.-+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888899999999888877543
No 8
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=22.16 E-value=34 Score=31.48 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCcCCCCCCCccchHHHHHHHHHHHHHHhHHHH--HHHHhhhcC
Q 006148 482 NAFQDALQKLCPVRAGGHECGCLPVLGRMVMEQCVARLDVAM--FNAILRESA 532 (659)
Q Consensus 482 ~AF~dA~eRLCPvRAgGHECGCLPVLaRlVMEQCVaRLDVAM--FNAILRESa 532 (659)
.||++-.+-||-+.-.+ +-|||+| |||+|+|-.
T Consensus 26 TaFH~Lvqvi~kvgkd~------------------~~Ld~~h~~F~~~L~eG~ 60 (129)
T 3fke_A 26 TAFHQLVQVICKLGKDS------------------NSLDIIHAEFQASLAEGD 60 (129)
T ss_dssp CHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHccch------------------hHHHHHHHHHHHHHhcCC
Confidence 46777666666542222 3589999 999999854
No 9
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.10 E-value=61 Score=27.86 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=25.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHH
Q 006148 251 IDEANLNQKIEEMELRIEKLEEE---LRDVAALE 281 (659)
Q Consensus 251 e~~~~~~~k~eele~rie~LE~E---LREaAAlE 281 (659)
|.-.+|..+|.||+.|+..||.| ||..|.-|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34568999999999999999998 67766655
No 10
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=21.49 E-value=41 Score=25.93 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 006148 257 NQKIEEMELRIEKLEEELRDV 277 (659)
Q Consensus 257 ~~k~eele~rie~LE~ELREa 277 (659)
...+++||.+|+.||..|...
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999888653
No 11
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=21.16 E-value=17 Score=28.28 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHhhhcCCCCCCCCCCCCcCCC
Q 006148 524 FNAILRESANEIPTDPVSDPILDS 547 (659)
Q Consensus 524 FNAILRESa~eiPTDPiSDPI~Ds 547 (659)
||..-.+|-=|.|+++-.||++|+
T Consensus 29 ~N~~T~~SqWe~P~~~~~dpl~~~ 52 (52)
T 2jx8_A 29 FNRFTNQSLWEMPVLGQHDVISDP 52 (52)
T ss_dssp EETTTTEEESSCCCCTTSCCCCCC
T ss_pred EECCCCCEEeCCCCCCCCCCCCCC
Confidence 567777888899999988999886
No 12
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=20.80 E-value=52 Score=35.19 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhcccccCCCCc
Q 006148 271 EEELRDVAALEISLYSVVPEHGSSA 295 (659)
Q Consensus 271 E~ELREaAAlEvsLYSVVaEHGSSs 295 (659)
+++|+.+|.+|+||=.++.|||..+
T Consensus 250 ~e~l~~~Ar~~~Alk~~lee~~~~A 274 (500)
T 4f2d_A 250 RQNVLEAARIELGMKRFLEQGGFHA 274 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 7899999999999999999999773
Done!