Query 006149
Match_columns 659
No_of_seqs 616 out of 3365
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2352 Predicted spermine/spe 100.0 3.7E-49 8.1E-54 422.4 18.9 385 18-642 3-438 (482)
2 PRK04457 spermidine synthase; 99.8 4.4E-18 9.5E-23 176.3 16.1 137 449-641 27-197 (262)
3 COG2226 UbiE Methylase involve 99.8 5E-18 1.1E-22 171.6 15.3 120 54-183 40-161 (238)
4 KOG1271 Methyltransferases [Ge 99.7 2E-17 4.3E-22 156.3 12.4 167 25-195 15-196 (227)
5 COG0421 SpeE Spermidine syntha 99.7 1.9E-16 4E-21 164.5 17.1 100 514-625 58-190 (282)
6 PF01209 Ubie_methyltran: ubiE 99.7 4.3E-17 9.3E-22 165.9 11.1 118 56-183 38-158 (233)
7 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.6E-15 3.4E-20 152.4 14.8 140 29-180 1-154 (213)
8 PLN02233 ubiquinone biosynthes 99.6 2.1E-15 4.6E-20 156.4 15.6 118 56-183 64-187 (261)
9 PLN02823 spermine synthase 99.6 2.7E-15 5.7E-20 160.0 15.8 116 515-642 86-246 (336)
10 PF08241 Methyltransf_11: Meth 99.6 6E-16 1.3E-20 133.5 9.0 95 73-176 1-95 (95)
11 PRK00536 speE spermidine synth 99.6 1.4E-15 3E-20 156.2 11.9 97 515-625 55-171 (262)
12 PF01564 Spermine_synth: Sperm 99.6 9E-16 2E-20 157.5 9.0 99 515-625 59-191 (246)
13 PRK13255 thiopurine S-methyltr 99.6 6.7E-15 1.4E-19 148.4 14.8 141 27-179 2-156 (218)
14 PRK13256 thiopurine S-methyltr 99.6 1.4E-14 2.9E-19 146.0 15.3 143 26-180 7-165 (226)
15 PLN02244 tocopherol O-methyltr 99.6 1.3E-14 2.8E-19 156.2 15.6 107 67-180 117-225 (340)
16 PRK11207 tellurite resistance 99.6 1.4E-14 3.1E-19 143.9 13.6 112 57-178 22-134 (197)
17 KOG1540 Ubiquinone biosynthesi 99.6 1.3E-14 2.9E-19 144.3 12.4 132 57-200 92-234 (296)
18 PF12847 Methyltransf_18: Meth 99.6 1.7E-14 3.6E-19 129.3 12.0 106 68-178 1-111 (112)
19 PF05724 TPMT: Thiopurine S-me 99.6 1.8E-14 3.9E-19 145.1 12.9 141 27-179 2-156 (218)
20 PLN02366 spermidine synthase 99.6 5E-14 1.1E-18 148.8 16.3 99 515-625 74-206 (308)
21 TIGR02752 MenG_heptapren 2-hep 99.5 7.4E-14 1.6E-18 141.8 15.3 125 49-183 29-156 (231)
22 COG2227 UbiG 2-polyprenyl-3-me 99.5 8.2E-15 1.8E-19 146.0 7.9 106 68-181 59-164 (243)
23 PF03848 TehB: Tellurite resis 99.5 7.5E-14 1.6E-18 137.0 14.4 130 27-179 5-134 (192)
24 PRK00811 spermidine synthase; 99.5 9.2E-14 2E-18 145.7 15.4 117 515-643 59-216 (283)
25 PF13847 Methyltransf_31: Meth 99.5 4E-14 8.7E-19 134.6 11.5 106 67-180 2-112 (152)
26 TIGR00477 tehB tellurite resis 99.5 5.5E-14 1.2E-18 139.5 12.9 114 56-179 21-134 (195)
27 PRK10258 biotin biosynthesis p 99.5 9.1E-14 2E-18 143.2 13.4 114 55-183 32-145 (251)
28 PLN02396 hexaprenyldihydroxybe 99.5 3.8E-14 8.3E-19 150.5 10.9 106 68-181 131-238 (322)
29 PTZ00098 phosphoethanolamine N 99.5 1.5E-13 3.2E-18 142.8 14.4 109 67-181 51-159 (263)
30 PRK11036 putative S-adenosyl-L 99.5 1.9E-13 4.1E-18 141.3 13.7 107 68-182 44-153 (255)
31 PRK11088 rrmA 23S rRNA methylt 99.5 2E-13 4.4E-18 142.5 13.4 147 17-184 37-187 (272)
32 PF13649 Methyltransf_25: Meth 99.5 4.6E-14 9.9E-19 124.7 7.2 96 72-172 1-101 (101)
33 PF05401 NodS: Nodulation prot 99.5 1.8E-13 3.8E-18 133.1 11.4 141 27-180 5-148 (201)
34 PRK15068 tRNA mo(5)U34 methylt 99.5 2.6E-13 5.7E-18 144.8 13.3 113 56-179 113-227 (322)
35 PRK01581 speE spermidine synth 99.5 2.5E-13 5.4E-18 144.4 12.0 99 515-625 133-268 (374)
36 PRK12335 tellurite resistance 99.5 9.7E-14 2.1E-18 146.0 8.8 104 68-178 120-223 (287)
37 PLN02336 phosphoethanolamine N 99.5 5.2E-13 1.1E-17 150.2 15.2 108 67-181 265-372 (475)
38 PRK15451 tRNA cmo(5)U34 methyl 99.4 7.5E-13 1.6E-17 136.3 13.7 105 68-179 56-165 (247)
39 TIGR00452 methyltransferase, p 99.4 9.9E-13 2.2E-17 139.2 14.0 106 67-180 120-227 (314)
40 PRK14103 trans-aconitate 2-met 99.4 5E-13 1.1E-17 138.1 11.3 99 67-179 28-127 (255)
41 PF08003 Methyltransf_9: Prote 99.4 8.7E-13 1.9E-17 136.0 12.9 180 44-236 96-283 (315)
42 TIGR03587 Pse_Me-ase pseudamin 99.4 9E-13 1.9E-17 131.7 12.6 101 68-180 43-144 (204)
43 PF13489 Methyltransf_23: Meth 99.4 6.4E-13 1.4E-17 126.3 11.0 109 54-181 10-118 (161)
44 PRK05785 hypothetical protein; 99.4 1.5E-12 3.2E-17 132.3 12.7 97 68-180 51-147 (226)
45 TIGR02072 BioC biotin biosynth 99.4 1.8E-12 3.9E-17 131.4 12.9 107 68-184 34-141 (240)
46 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.1E-12 4.6E-17 137.8 13.1 104 68-180 113-217 (340)
47 PRK00107 gidB 16S rRNA methylt 99.4 7.9E-12 1.7E-16 123.1 15.7 118 68-199 45-165 (187)
48 TIGR00740 methyltransferase, p 99.4 3.9E-12 8.4E-17 130.2 14.0 106 68-180 53-163 (239)
49 PRK08317 hypothetical protein; 99.4 5.7E-12 1.2E-16 127.6 14.3 118 53-180 7-126 (241)
50 PRK01683 trans-aconitate 2-met 99.4 4.1E-12 8.8E-17 131.4 13.0 100 67-178 30-130 (258)
51 PRK11873 arsM arsenite S-adeno 99.4 4.2E-12 9.2E-17 132.4 12.8 107 67-180 76-185 (272)
52 PF02353 CMAS: Mycolic acid cy 99.4 6.4E-12 1.4E-16 130.9 13.9 115 57-180 51-168 (273)
53 PRK06922 hypothetical protein; 99.4 4.4E-12 9.6E-17 143.2 13.2 112 68-179 418-538 (677)
54 KOG4300 Predicted methyltransf 99.4 3.3E-12 7.2E-17 123.5 10.3 107 67-180 75-184 (252)
55 KOG1270 Methyltransferases [Co 99.3 1.2E-12 2.6E-17 131.3 7.3 102 69-181 90-198 (282)
56 PRK00216 ubiE ubiquinone/menaq 99.3 1.2E-11 2.7E-16 125.5 14.4 116 56-181 42-161 (239)
57 COG2230 Cfa Cyclopropane fatty 99.3 1.3E-11 2.7E-16 127.4 13.7 115 61-183 65-181 (283)
58 PRK00121 trmB tRNA (guanine-N( 99.3 6.2E-12 1.3E-16 125.6 10.9 131 68-199 40-177 (202)
59 TIGR02469 CbiT precorrin-6Y C5 99.3 3.4E-11 7.4E-16 109.3 14.4 114 53-179 7-123 (124)
60 KOG2361 Predicted methyltransf 99.3 8.5E-12 1.8E-16 123.8 10.7 149 26-184 34-189 (264)
61 TIGR00138 gidB 16S rRNA methyl 99.3 2.2E-11 4.7E-16 119.5 13.2 100 68-179 42-143 (181)
62 TIGR00537 hemK_rel_arch HemK-r 99.3 4.2E-11 9E-16 117.1 15.1 111 68-181 19-143 (179)
63 PLN02336 phosphoethanolamine N 99.3 1.3E-11 2.9E-16 138.8 13.1 114 56-179 28-143 (475)
64 smart00138 MeTrc Methyltransfe 99.3 1E-11 2.2E-16 129.0 10.7 107 68-179 99-243 (264)
65 PRK13944 protein-L-isoaspartat 99.3 3.3E-11 7.2E-16 120.6 13.9 112 51-178 58-173 (205)
66 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.3E-11 9.3E-16 120.2 14.5 114 56-180 30-145 (223)
67 smart00828 PKS_MT Methyltransf 99.3 1.5E-11 3.2E-16 124.4 11.2 103 70-180 1-106 (224)
68 PF08242 Methyltransf_12: Meth 99.3 8.1E-13 1.8E-17 116.1 0.7 95 73-174 1-99 (99)
69 PF05175 MTS: Methyltransferas 99.3 4.1E-11 8.9E-16 116.3 12.6 123 55-183 21-145 (170)
70 PRK13942 protein-L-isoaspartat 99.3 6E-11 1.3E-15 119.4 14.1 114 49-178 60-176 (212)
71 PRK11705 cyclopropane fatty ac 99.3 3.8E-11 8.3E-16 131.0 13.6 106 67-182 166-271 (383)
72 PRK08287 cobalt-precorrin-6Y C 99.3 2.2E-10 4.8E-15 112.8 17.5 116 50-180 16-133 (187)
73 COG4106 Tam Trans-aconitate me 99.2 1.7E-11 3.7E-16 119.6 8.7 102 67-180 29-131 (257)
74 PRK06202 hypothetical protein; 99.2 7.4E-11 1.6E-15 120.2 13.8 107 67-182 59-170 (232)
75 TIGR00080 pimt protein-L-isoas 99.2 7E-11 1.5E-15 119.1 13.5 112 51-178 63-177 (215)
76 PRK07580 Mg-protoporphyrin IX 99.2 7.6E-11 1.6E-15 119.4 13.3 136 28-173 22-161 (230)
77 PRK11188 rrmJ 23S rRNA methylt 99.2 1E-10 2.3E-15 117.3 13.8 140 67-218 50-203 (209)
78 TIGR02021 BchM-ChlM magnesium 99.2 7.7E-11 1.7E-15 119.0 12.8 137 28-177 14-157 (219)
79 PRK00312 pcm protein-L-isoaspa 99.2 1.4E-10 3E-15 116.5 14.0 138 25-179 38-176 (212)
80 PLN03075 nicotianamine synthas 99.2 1.2E-10 2.6E-15 121.5 13.6 132 42-179 97-234 (296)
81 PRK14967 putative methyltransf 99.2 1.9E-10 4.1E-15 116.6 14.8 113 67-180 35-161 (223)
82 PRK00377 cbiT cobalt-precorrin 99.2 4E-10 8.7E-15 112.1 16.5 117 51-180 26-147 (198)
83 TIGR00417 speE spermidine synt 99.2 1.2E-10 2.5E-15 121.6 12.4 100 514-625 54-186 (270)
84 PLN02585 magnesium protoporphy 99.2 2E-10 4.4E-15 121.9 14.1 114 52-175 128-247 (315)
85 PF13659 Methyltransf_26: Meth 99.2 7.2E-11 1.6E-15 106.6 9.1 111 69-179 1-116 (117)
86 TIGR01177 conserved hypothetic 99.2 4.2E-10 9E-15 120.8 15.6 128 52-183 169-299 (329)
87 PRK15001 SAM-dependent 23S rib 99.2 3.6E-10 7.8E-15 122.5 14.8 120 54-179 217-341 (378)
88 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.2E-10 2.6E-15 115.5 9.8 115 68-182 16-136 (194)
89 PRK05134 bifunctional 3-demeth 99.2 3.2E-10 6.9E-15 115.4 13.0 106 67-180 47-153 (233)
90 PRK04266 fibrillarin; Provisio 99.2 4.1E-10 9E-15 114.2 13.7 121 46-177 50-175 (226)
91 PRK09489 rsmC 16S ribosomal RN 99.1 5.8E-10 1.3E-14 119.9 15.0 147 25-180 153-305 (342)
92 TIGR00406 prmA ribosomal prote 99.1 6.1E-10 1.3E-14 117.3 14.3 102 68-181 159-262 (288)
93 TIGR02716 C20_methyl_CrtF C-20 99.1 5.3E-10 1.2E-14 118.7 13.7 106 67-180 148-256 (306)
94 TIGR03438 probable methyltrans 99.1 5E-10 1.1E-14 118.7 13.0 108 68-180 63-179 (301)
95 TIGR01983 UbiG ubiquinone bios 99.1 3.7E-10 8E-15 114.0 11.5 105 68-180 45-151 (224)
96 PRK07402 precorrin-6B methylas 99.1 3.7E-09 8.1E-14 104.9 17.2 119 50-182 25-146 (196)
97 TIGR03534 RF_mod_PrmC protein- 99.1 6.3E-10 1.4E-14 114.2 11.9 110 68-178 87-217 (251)
98 TIGR00438 rrmJ cell division p 99.1 2E-09 4.3E-14 106.1 14.9 139 67-218 31-184 (188)
99 PF07021 MetW: Methionine bios 99.1 3.1E-10 6.8E-15 110.4 8.7 102 56-178 6-109 (193)
100 PRK09328 N5-glutamine S-adenos 99.1 8.6E-10 1.9E-14 114.9 12.6 111 67-178 107-238 (275)
101 TIGR03533 L3_gln_methyl protei 99.1 1.5E-09 3.2E-14 114.1 14.2 111 68-179 121-252 (284)
102 PRK14121 tRNA (guanine-N(7)-)- 99.1 1E-09 2.2E-14 118.6 13.0 117 67-184 121-241 (390)
103 KOG1541 Predicted protein carb 99.1 1E-09 2.2E-14 107.5 11.1 125 52-182 35-164 (270)
104 PRK14968 putative methyltransf 99.1 3.6E-09 7.9E-14 103.4 15.3 112 67-180 22-150 (188)
105 PF03291 Pox_MCEL: mRNA cappin 99.0 6.8E-10 1.5E-14 118.6 10.4 118 68-188 62-196 (331)
106 COG2518 Pcm Protein-L-isoaspar 99.0 2.4E-09 5.3E-14 105.7 12.8 138 25-179 32-170 (209)
107 PRK00517 prmA ribosomal protei 99.0 1.5E-09 3.3E-14 111.9 12.0 97 67-181 118-216 (250)
108 PTZ00146 fibrillarin; Provisio 99.0 2.3E-09 4.9E-14 111.6 13.2 122 46-177 110-236 (293)
109 PRK14966 unknown domain/N5-glu 99.0 1.5E-09 3.1E-14 118.1 12.3 111 68-178 251-381 (423)
110 PRK03612 spermidine synthase; 99.0 8.9E-10 1.9E-14 125.1 11.1 98 516-625 281-415 (521)
111 TIGR02081 metW methionine bios 99.0 1.7E-09 3.6E-14 107.3 11.2 90 68-170 13-104 (194)
112 PRK11805 N5-glutamine S-adenos 99.0 3.2E-09 6.9E-14 112.7 13.9 109 70-179 135-264 (307)
113 cd02440 AdoMet_MTases S-adenos 99.0 2E-09 4.2E-14 92.6 10.0 101 71-177 1-103 (107)
114 COG4123 Predicted O-methyltran 99.0 2.4E-09 5.1E-14 108.8 11.7 137 57-198 36-189 (248)
115 TIGR00536 hemK_fam HemK family 99.0 3.1E-09 6.8E-14 111.7 13.0 109 70-179 116-245 (284)
116 PF06325 PrmA: Ribosomal prote 99.0 3.1E-09 6.7E-14 111.6 12.4 120 67-199 160-279 (295)
117 KOG1975 mRNA cap methyltransfe 99.0 1.1E-09 2.4E-14 112.7 8.7 120 67-189 116-248 (389)
118 COG2242 CobL Precorrin-6B meth 99.0 2.4E-08 5.2E-13 96.7 16.4 120 50-183 19-140 (187)
119 COG2264 PrmA Ribosomal protein 99.0 5.9E-09 1.3E-13 108.7 13.0 123 68-202 162-287 (300)
120 PF01135 PCMT: Protein-L-isoas 99.0 1.5E-09 3.3E-14 108.7 8.1 118 46-179 53-173 (209)
121 PLN02232 ubiquinone biosynthes 98.9 1.9E-09 4.2E-14 103.6 8.3 82 95-183 1-86 (160)
122 KOG3010 Methyltransferase [Gen 98.9 1.6E-09 3.5E-14 107.8 7.7 103 70-181 35-140 (261)
123 COG2813 RsmC 16S RNA G1207 met 98.9 1.1E-08 2.4E-13 106.1 14.2 133 53-192 146-280 (300)
124 PRK13943 protein-L-isoaspartat 98.9 9.1E-09 2E-13 109.6 13.2 113 50-178 65-180 (322)
125 PRK10901 16S rRNA methyltransf 98.9 1.6E-08 3.4E-13 112.4 15.0 122 56-180 235-374 (427)
126 smart00650 rADc Ribosomal RNA 98.9 2.3E-08 5.1E-13 96.9 13.0 102 67-178 12-113 (169)
127 TIGR03704 PrmC_rel_meth putati 98.9 2E-08 4.4E-13 103.7 12.7 110 69-180 87-218 (251)
128 PRK00811 spermidine synthase; 98.9 1.6E-08 3.5E-13 106.2 12.0 108 68-178 76-191 (283)
129 PRK04457 spermidine synthase; 98.8 2.9E-08 6.4E-13 103.1 13.5 112 68-182 66-181 (262)
130 PRK14901 16S rRNA methyltransf 98.8 2E-08 4.4E-13 111.8 13.1 114 67-180 251-386 (434)
131 PRK14903 16S rRNA methyltransf 98.8 2.8E-08 6E-13 110.4 13.9 114 67-180 236-368 (431)
132 TIGR00563 rsmB ribosomal RNA s 98.8 2.5E-08 5.5E-13 110.8 13.3 122 56-180 229-370 (426)
133 TIGR00446 nop2p NOL1/NOP2/sun 98.8 3.5E-08 7.6E-13 102.7 13.4 114 67-180 70-201 (264)
134 PRK14904 16S rRNA methyltransf 98.8 4E-08 8.6E-13 109.8 13.9 114 67-181 249-380 (445)
135 PHA03411 putative methyltransf 98.8 3.1E-08 6.8E-13 102.1 11.9 111 68-183 64-188 (279)
136 PRK01544 bifunctional N5-gluta 98.8 3.2E-08 6.9E-13 112.0 12.1 109 69-178 139-269 (506)
137 PRK15128 23S rRNA m(5)C1962 me 98.8 9E-08 2E-12 104.9 14.7 132 43-180 201-341 (396)
138 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.7E-07 3.7E-12 110.2 17.0 130 45-180 521-658 (702)
139 PRK14902 16S rRNA methyltransf 98.7 9.1E-08 2E-12 106.9 13.4 121 56-180 241-381 (444)
140 COG2890 HemK Methylase of poly 98.7 1.3E-07 2.8E-12 99.1 13.4 118 71-190 113-251 (280)
141 PF05891 Methyltransf_PK: AdoM 98.7 3.2E-08 6.9E-13 98.2 8.1 107 68-179 55-162 (218)
142 PLN02781 Probable caffeoyl-CoA 98.7 1.2E-07 2.6E-12 96.9 12.0 102 67-178 67-178 (234)
143 PLN02366 spermidine synthase 98.7 1.5E-07 3.3E-12 99.7 12.9 109 67-178 90-206 (308)
144 PF00891 Methyltransf_2: O-met 98.7 1.1E-07 2.5E-12 97.3 11.2 100 67-180 99-201 (241)
145 PHA03412 putative methyltransf 98.7 2.9E-07 6.2E-12 93.1 13.3 101 68-173 49-158 (241)
146 COG2263 Predicted RNA methylas 98.6 2E-07 4.4E-12 90.1 11.1 101 44-147 21-121 (198)
147 PRK13168 rumA 23S rRNA m(5)U19 98.6 3.9E-07 8.4E-12 101.9 14.7 131 53-199 285-420 (443)
148 TIGR00417 speE spermidine synt 98.6 2.7E-07 5.8E-12 96.4 12.1 109 68-179 72-187 (270)
149 COG4262 Predicted spermidine s 98.6 6.2E-08 1.3E-12 101.2 7.1 98 516-625 273-407 (508)
150 COG4976 Predicted methyltransf 98.6 1.2E-08 2.7E-13 100.5 1.8 101 67-179 124-226 (287)
151 COG1041 Predicted DNA modifica 98.6 8.6E-07 1.9E-11 93.8 15.5 126 51-180 183-312 (347)
152 PF02390 Methyltransf_4: Putat 98.6 1.6E-07 3.6E-12 93.2 9.3 115 69-183 18-138 (195)
153 PRK01581 speE spermidine synth 98.6 3.8E-07 8.1E-12 97.7 12.2 111 68-180 150-270 (374)
154 KOG1499 Protein arginine N-met 98.6 1.5E-07 3.3E-12 98.9 8.9 104 67-175 59-164 (346)
155 PF01739 CheR: CheR methyltran 98.6 2.3E-07 4.9E-12 92.1 9.1 106 68-178 31-175 (196)
156 PRK10909 rsmD 16S rRNA m(2)G96 98.6 8E-07 1.7E-11 88.5 13.0 120 51-180 38-161 (199)
157 PF05219 DREV: DREV methyltran 98.5 3.3E-07 7.3E-12 93.1 10.1 96 68-179 94-189 (265)
158 PRK03522 rumB 23S rRNA methylu 98.5 5.8E-07 1.3E-11 96.0 12.1 74 68-142 173-248 (315)
159 KOG2899 Predicted methyltransf 98.5 5E-07 1.1E-11 90.1 9.9 108 68-178 58-209 (288)
160 COG2519 GCD14 tRNA(1-methylade 98.5 9.2E-07 2E-11 89.5 11.7 116 54-185 83-202 (256)
161 PRK10611 chemotaxis methyltran 98.5 9.7E-07 2.1E-11 92.5 12.3 105 69-178 116-262 (287)
162 KOG3191 Predicted N6-DNA-methy 98.5 1.8E-06 4E-11 82.6 12.7 133 68-202 43-192 (209)
163 PF10294 Methyltransf_16: Puta 98.5 5.9E-07 1.3E-11 87.6 9.5 106 67-180 44-158 (173)
164 COG0220 Predicted S-adenosylme 98.5 8E-07 1.7E-11 90.1 10.8 115 69-183 49-169 (227)
165 PRK00274 ksgA 16S ribosomal RN 98.5 9.6E-07 2.1E-11 92.3 11.7 87 52-144 29-115 (272)
166 PLN02672 methionine S-methyltr 98.5 8.3E-07 1.8E-11 106.9 12.1 111 69-179 119-279 (1082)
167 PRK03612 spermidine synthase; 98.5 5.3E-07 1.2E-11 102.6 10.0 110 68-179 297-416 (521)
168 PRK14896 ksgA 16S ribosomal RN 98.5 9.5E-07 2.1E-11 91.7 10.9 87 52-145 16-102 (258)
169 KOG1562 Spermidine synthase [A 98.5 1.3E-07 2.8E-12 96.7 4.2 112 515-638 104-251 (337)
170 TIGR00479 rumA 23S rRNA (uraci 98.4 1.8E-06 3.8E-11 96.3 13.5 100 67-177 291-395 (431)
171 KOG2940 Predicted methyltransf 98.4 2.1E-07 4.5E-12 91.8 4.7 110 68-185 72-181 (325)
172 PF08704 GCD14: tRNA methyltra 98.4 2.1E-06 4.6E-11 88.0 12.2 122 50-186 25-154 (247)
173 PF06080 DUF938: Protein of un 98.4 1.6E-06 3.5E-11 85.8 10.7 118 52-178 13-141 (204)
174 PF05185 PRMT5: PRMT5 arginine 98.4 1.4E-06 3.1E-11 96.9 10.6 101 69-175 187-294 (448)
175 PF01596 Methyltransf_3: O-met 98.4 1.5E-06 3.3E-11 86.9 9.8 102 68-179 45-156 (205)
176 PF01170 UPF0020: Putative RNA 98.4 2.6E-06 5.7E-11 83.5 11.3 117 51-170 14-143 (179)
177 TIGR00755 ksgA dimethyladenosi 98.4 3.9E-06 8.5E-11 86.8 13.0 87 52-145 16-105 (253)
178 PF05148 Methyltransf_8: Hypot 98.4 1.9E-06 4.1E-11 85.0 9.5 123 54-202 60-184 (219)
179 PLN02476 O-methyltransferase 98.3 3.9E-06 8.4E-11 87.4 12.2 102 67-178 117-228 (278)
180 KOG2904 Predicted methyltransf 98.3 5.2E-06 1.1E-10 84.3 12.6 128 52-179 132-286 (328)
181 COG4122 Predicted O-methyltran 98.3 3.1E-06 6.7E-11 85.0 10.7 116 52-180 46-168 (219)
182 COG3963 Phospholipid N-methylt 98.3 5.7E-06 1.2E-10 78.3 10.9 116 53-180 36-158 (194)
183 TIGR02085 meth_trns_rumB 23S r 98.3 4.5E-06 9.8E-11 91.2 11.8 101 68-179 233-335 (374)
184 PRK04148 hypothetical protein; 98.3 4.4E-06 9.6E-11 77.4 9.9 110 52-183 3-114 (134)
185 KOG1500 Protein arginine N-met 98.3 2.4E-06 5.2E-11 88.5 8.8 102 67-175 176-279 (517)
186 TIGR03439 methyl_EasF probable 98.3 7.3E-06 1.6E-10 87.2 12.7 106 68-178 76-197 (319)
187 TIGR00095 RNA methyltransferas 98.3 4.7E-06 1E-10 82.4 10.5 105 68-180 49-161 (189)
188 PF10672 Methyltrans_SAM: S-ad 98.3 7.1E-06 1.5E-10 85.9 11.8 133 41-180 102-240 (286)
189 PLN02823 spermine synthase 98.2 7E-06 1.5E-10 88.1 11.7 109 68-178 103-220 (336)
190 PTZ00338 dimethyladenosine tra 98.2 4.6E-06 1E-10 88.0 10.0 88 53-146 24-113 (294)
191 COG1092 Predicted SAM-dependen 98.2 1E-05 2.2E-10 88.1 12.1 130 46-181 201-339 (393)
192 TIGR00478 tly hemolysin TlyA f 98.2 9.1E-06 2E-10 82.5 11.0 91 68-178 75-171 (228)
193 KOG1331 Predicted methyltransf 98.2 2.7E-06 5.8E-11 87.2 5.9 134 28-180 11-145 (293)
194 PF07942 N2227: N2227-like pro 98.1 1.5E-05 3.1E-10 82.6 11.1 123 50-180 37-204 (270)
195 COG1352 CheR Methylase of chem 98.1 1.5E-05 3.3E-10 82.6 11.0 124 50-178 78-241 (268)
196 PLN02589 caffeoyl-CoA O-methyl 98.1 1.2E-05 2.6E-10 82.7 9.7 101 68-178 79-190 (247)
197 KOG3420 Predicted RNA methylas 98.1 5.5E-06 1.2E-10 76.5 6.4 104 42-145 21-125 (185)
198 KOG3045 Predicted RNA methylas 98.1 1.7E-05 3.7E-10 80.0 9.6 119 56-202 170-290 (325)
199 PRK01544 bifunctional N5-gluta 98.1 1.4E-05 3E-10 90.8 10.0 117 68-184 347-468 (506)
200 PF03602 Cons_hypoth95: Conser 98.1 9E-06 2E-10 80.0 7.4 121 52-181 27-156 (183)
201 KOG1661 Protein-L-isoaspartate 98.0 2.7E-05 5.8E-10 76.5 9.8 114 52-179 67-194 (237)
202 PF03141 Methyltransf_29: Puta 98.0 6.9E-06 1.5E-10 90.3 6.0 118 52-179 100-220 (506)
203 PF01728 FtsJ: FtsJ-like methy 98.0 8.2E-06 1.8E-10 79.8 5.9 116 68-194 23-154 (181)
204 COG0500 SmtA SAM-dependent met 98.0 6.4E-05 1.4E-09 67.9 11.2 101 72-182 52-159 (257)
205 PF02384 N6_Mtase: N-6 DNA Met 98.0 0.0002 4.2E-09 76.3 15.8 182 41-225 22-235 (311)
206 PRK11933 yebU rRNA (cytosine-C 97.9 7.5E-05 1.6E-09 83.6 12.8 114 67-180 112-244 (470)
207 KOG1269 SAM-dependent methyltr 97.9 1.2E-05 2.7E-10 86.8 6.3 107 67-180 109-217 (364)
208 PRK04338 N(2),N(2)-dimethylgua 97.9 4.8E-05 1E-09 83.2 10.7 98 69-177 58-157 (382)
209 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.9 1.6E-05 3.5E-10 81.8 6.6 152 23-180 14-201 (256)
210 COG2521 Predicted archaeal met 97.9 6.9E-06 1.5E-10 81.7 3.7 108 67-179 133-246 (287)
211 PF02475 Met_10: Met-10+ like- 97.9 5E-05 1.1E-09 75.6 9.5 105 54-175 92-199 (200)
212 PF12847 Methyltransf_18: Meth 97.9 3.5E-05 7.7E-10 68.6 7.5 79 543-624 3-110 (112)
213 PF12147 Methyltransf_20: Puta 97.9 0.00017 3.8E-09 74.5 13.3 108 67-178 134-249 (311)
214 COG0421 SpeE Spermidine syntha 97.9 0.00015 3.3E-09 75.9 13.0 106 70-178 78-190 (282)
215 PF01564 Spermine_synth: Sperm 97.9 6.9E-05 1.5E-09 77.3 10.1 108 68-178 76-191 (246)
216 KOG3178 Hydroxyindole-O-methyl 97.9 5.8E-05 1.3E-09 79.9 9.4 102 69-182 178-279 (342)
217 PRK00536 speE spermidine synth 97.8 0.00018 3.9E-09 74.5 12.6 97 67-179 71-172 (262)
218 COG0030 KsgA Dimethyladenosine 97.8 8.5E-05 1.8E-09 76.4 10.0 86 55-145 20-106 (259)
219 PRK11727 23S rRNA mA1618 methy 97.8 0.0001 2.2E-09 78.5 10.6 81 68-148 114-203 (321)
220 PRK05031 tRNA (uracil-5-)-meth 97.8 4.7E-05 1E-09 82.9 8.3 58 70-128 208-266 (362)
221 COG0293 FtsJ 23S rRNA methylas 97.8 0.00037 8E-09 69.2 13.1 123 67-200 44-181 (205)
222 TIGR02143 trmA_only tRNA (urac 97.8 8.2E-05 1.8E-09 80.8 9.0 58 70-128 199-257 (353)
223 KOG0820 Ribosomal RNA adenine 97.7 0.00014 3.1E-09 74.1 9.6 83 60-145 50-134 (315)
224 PRK00050 16S rRNA m(4)C1402 me 97.7 8.8E-05 1.9E-09 78.1 8.4 87 51-141 5-97 (296)
225 COG0742 N6-adenine-specific me 97.7 0.0008 1.7E-08 65.9 13.8 123 52-181 28-157 (187)
226 PF02527 GidB: rRNA small subu 97.7 0.00013 2.9E-09 71.7 8.1 97 71-179 51-149 (184)
227 COG0116 Predicted N6-adenine-s 97.7 0.00048 1E-08 74.2 12.7 124 53-179 179-345 (381)
228 PF09243 Rsm22: Mitochondrial 97.6 0.00042 9.2E-09 72.6 11.3 126 50-183 15-144 (274)
229 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00065 1.4E-08 70.7 12.4 105 51-170 16-123 (262)
230 COG2520 Predicted methyltransf 97.6 0.00051 1.1E-08 73.5 11.5 116 53-184 178-295 (341)
231 PF01269 Fibrillarin: Fibrilla 97.5 0.001 2.2E-08 66.5 12.4 125 46-180 51-180 (229)
232 TIGR00308 TRM1 tRNA(guanine-26 97.5 0.00026 5.7E-09 77.2 9.0 99 69-178 45-147 (374)
233 PF03059 NAS: Nicotianamine sy 97.5 0.00066 1.4E-08 70.7 11.3 132 42-179 94-231 (276)
234 COG0357 GidB Predicted S-adeno 97.4 0.00097 2.1E-08 66.9 10.7 100 69-179 68-169 (215)
235 PF04816 DUF633: Family of unk 97.4 0.0022 4.7E-08 64.3 13.1 123 72-206 1-127 (205)
236 PF11968 DUF3321: Putative met 97.4 0.00038 8.3E-09 69.3 7.6 92 69-180 52-151 (219)
237 PF05958 tRNA_U5-meth_tr: tRNA 97.4 0.00098 2.1E-08 72.4 11.3 71 53-128 185-256 (352)
238 COG2265 TrmA SAM-dependent met 97.4 0.00058 1.3E-08 75.8 9.6 83 54-140 282-368 (432)
239 COG0144 Sun tRNA and rRNA cyto 97.4 0.002 4.4E-08 70.0 13.6 115 66-180 154-290 (355)
240 TIGR02987 met_A_Alw26 type II 97.4 0.0012 2.5E-08 75.7 12.1 133 48-180 7-198 (524)
241 KOG2915 tRNA(1-methyladenosine 97.4 0.0013 2.9E-08 67.1 10.9 112 54-180 94-212 (314)
242 COG1889 NOP1 Fibrillarin-like 97.4 0.0012 2.6E-08 64.7 10.0 124 45-178 53-180 (231)
243 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0021 4.6E-08 76.0 14.1 124 52-180 176-349 (702)
244 KOG3987 Uncharacterized conser 97.3 5.3E-05 1.2E-09 74.0 0.1 96 68-179 112-208 (288)
245 PF08123 DOT1: Histone methyla 97.3 0.0007 1.5E-08 67.8 7.7 103 67-177 41-157 (205)
246 COG3897 Predicted methyltransf 97.2 0.00084 1.8E-08 65.5 7.5 120 57-187 67-188 (218)
247 KOG1663 O-methyltransferase [S 97.2 0.0024 5.3E-08 64.0 10.7 101 68-178 73-183 (237)
248 PF13679 Methyltransf_32: Meth 97.2 0.0033 7.1E-08 59.1 10.6 99 67-178 24-131 (141)
249 PRK00107 gidB 16S rRNA methylt 97.2 0.0033 7.1E-08 62.1 10.9 112 517-638 28-158 (187)
250 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0027 6E-08 66.8 10.4 114 67-180 84-221 (283)
251 KOG4589 Cell division protein 97.1 0.0049 1.1E-07 59.8 10.7 106 67-182 68-188 (232)
252 TIGR02469 CbiT precorrin-6Y C5 97.1 0.0042 9E-08 55.9 9.8 81 542-625 20-122 (124)
253 PRK11760 putative 23S rRNA C24 97.0 0.0023 5E-08 68.1 8.8 70 67-143 210-279 (357)
254 PF09445 Methyltransf_15: RNA 96.9 0.0015 3.2E-08 62.9 5.7 69 71-141 2-76 (163)
255 KOG1709 Guanidinoacetate methy 96.9 0.0044 9.6E-08 61.4 8.6 106 67-179 100-207 (271)
256 PF13659 Methyltransf_26: Meth 96.9 0.0031 6.7E-08 56.5 7.2 77 543-623 2-113 (117)
257 PRK14103 trans-aconitate 2-met 96.9 0.0067 1.5E-07 62.7 10.5 83 540-625 28-126 (255)
258 PF01596 Methyltransf_3: O-met 96.8 0.003 6.4E-08 63.3 7.2 81 540-625 44-156 (205)
259 PRK01683 trans-aconitate 2-met 96.8 0.0091 2E-07 61.6 11.0 82 541-625 31-130 (258)
260 PRK08287 cobalt-precorrin-6Y C 96.8 0.0081 1.7E-07 59.0 9.8 82 541-625 31-131 (187)
261 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.0097 2.1E-07 61.3 10.8 80 541-623 56-162 (247)
262 PF08241 Methyltransf_11: Meth 96.7 0.0058 1.3E-07 51.9 7.6 74 546-623 1-95 (95)
263 COG4122 Predicted O-methyltran 96.7 0.0076 1.7E-07 60.8 9.3 83 540-625 58-167 (219)
264 TIGR00740 methyltransferase, p 96.7 0.011 2.4E-07 60.5 10.4 81 541-624 53-160 (239)
265 TIGR00138 gidB 16S rRNA methyl 96.7 0.013 2.9E-07 57.5 10.5 81 542-625 43-142 (181)
266 COG4076 Predicted RNA methylas 96.6 0.0031 6.8E-08 61.1 5.5 100 68-175 32-132 (252)
267 TIGR02072 BioC biotin biosynth 96.6 0.01 2.2E-07 59.8 9.8 83 540-625 33-135 (240)
268 PF04672 Methyltransf_19: S-ad 96.6 0.011 2.4E-07 61.1 9.9 110 68-182 68-194 (267)
269 PF13578 Methyltransf_24: Meth 96.6 0.0011 2.3E-08 58.9 2.2 96 73-178 1-105 (106)
270 COG2227 UbiG 2-polyprenyl-3-me 96.6 0.0081 1.8E-07 60.8 8.4 99 542-645 60-189 (243)
271 KOG2798 Putative trehalase [Ca 96.6 0.0081 1.7E-07 62.7 8.4 105 68-180 150-298 (369)
272 PF05175 MTS: Methyltransferas 96.6 0.0074 1.6E-07 58.5 7.7 94 541-637 31-154 (170)
273 COG4262 Predicted spermidine s 96.5 0.0097 2.1E-07 63.2 8.7 108 68-180 289-409 (508)
274 PF08242 Methyltransf_12: Meth 96.5 0.00039 8.5E-09 60.7 -1.7 73 546-621 1-99 (99)
275 PRK00121 trmB tRNA (guanine-N( 96.5 0.02 4.3E-07 57.2 10.3 82 541-625 40-156 (202)
276 TIGR00006 S-adenosyl-methyltra 96.4 0.016 3.5E-07 61.3 9.5 89 49-140 4-98 (305)
277 TIGR01444 fkbM_fam methyltrans 96.3 0.011 2.3E-07 55.1 7.2 58 71-128 1-60 (143)
278 PF06962 rRNA_methylase: Putat 96.3 0.049 1.1E-06 51.0 11.3 124 93-222 1-140 (140)
279 COG4123 Predicted O-methyltran 96.3 0.023 5.1E-07 58.2 9.6 56 540-595 43-99 (248)
280 PRK07402 precorrin-6B methylas 96.3 0.021 4.5E-07 56.6 9.1 79 541-625 40-142 (196)
281 PLN03075 nicotianamine synthas 96.2 0.031 6.8E-07 58.9 10.4 82 541-625 123-233 (296)
282 PF00891 Methyltransf_2: O-met 96.2 0.017 3.7E-07 59.1 8.3 75 539-623 98-197 (241)
283 TIGR03534 RF_mod_PrmC protein- 96.2 0.025 5.5E-07 57.8 9.7 45 541-585 87-131 (251)
284 TIGR00091 tRNA (guanine-N(7)-) 96.1 0.027 5.8E-07 55.8 9.2 82 541-625 16-132 (194)
285 TIGR02752 MenG_heptapren 2-hep 96.1 0.044 9.5E-07 55.5 10.6 80 541-623 45-149 (231)
286 KOG1122 tRNA and rRNA cytosine 96.1 0.043 9.2E-07 59.6 10.7 115 65-180 238-373 (460)
287 PF02353 CMAS: Mycolic acid cy 96.0 0.012 2.6E-07 61.7 6.3 80 541-626 62-167 (273)
288 PRK11088 rrmA 23S rRNA methylt 96.0 0.052 1.1E-06 56.7 11.0 82 541-625 85-181 (272)
289 COG1189 Predicted rRNA methyla 96.0 0.055 1.2E-06 54.8 10.3 98 67-179 78-179 (245)
290 PTZ00098 phosphoethanolamine N 95.9 0.032 7E-07 58.1 9.1 80 541-624 52-155 (263)
291 smart00828 PKS_MT Methyltransf 95.9 0.036 7.9E-07 55.8 9.3 79 543-624 1-103 (224)
292 PRK13942 protein-L-isoaspartat 95.9 0.051 1.1E-06 54.7 10.1 82 541-625 76-176 (212)
293 PLN02396 hexaprenyldihydroxybe 95.9 0.028 6E-07 60.3 8.5 79 542-625 132-235 (322)
294 PRK11036 putative S-adenosyl-L 95.9 0.02 4.2E-07 59.3 7.2 79 540-623 43-147 (255)
295 KOG3115 Methyltransferase-like 95.9 0.02 4.3E-07 56.4 6.6 111 68-180 60-185 (249)
296 KOG2730 Methylase [General fun 95.9 0.016 3.5E-07 57.6 6.0 72 68-141 94-172 (263)
297 PLN02244 tocopherol O-methyltr 95.8 0.068 1.5E-06 57.8 11.4 80 540-623 117-221 (340)
298 PRK08317 hypothetical protein; 95.8 0.059 1.3E-06 54.2 10.3 81 540-623 18-122 (241)
299 PRK11207 tellurite resistance 95.8 0.028 6E-07 55.9 7.7 76 541-621 30-130 (197)
300 PLN02233 ubiquinone biosynthes 95.8 0.053 1.2E-06 56.4 10.1 80 541-623 73-180 (261)
301 PLN02781 Probable caffeoyl-CoA 95.8 0.046 1E-06 55.9 9.2 81 540-625 67-179 (234)
302 COG2230 Cfa Cyclopropane fatty 95.7 0.038 8.2E-07 57.8 8.5 83 540-626 71-177 (283)
303 COG4627 Uncharacterized protei 95.7 0.0025 5.4E-08 59.9 -0.4 61 116-181 29-89 (185)
304 PRK00517 prmA ribosomal protei 95.7 0.059 1.3E-06 55.6 9.6 81 541-625 119-213 (250)
305 COG4798 Predicted methyltransf 95.6 0.049 1.1E-06 53.3 8.0 113 67-180 47-168 (238)
306 TIGR00080 pimt protein-L-isoas 95.6 0.077 1.7E-06 53.4 10.0 82 541-625 77-177 (215)
307 PF07091 FmrO: Ribosomal RNA m 95.5 0.038 8.3E-07 56.5 7.5 80 68-148 105-185 (251)
308 PRK10258 biotin biosynthesis p 95.5 0.18 3.9E-06 51.8 12.7 80 541-625 42-140 (251)
309 TIGR00477 tehB tellurite resis 95.5 0.088 1.9E-06 52.2 10.0 76 541-621 30-129 (195)
310 COG2384 Predicted SAM-dependen 95.5 0.16 3.4E-06 51.0 11.5 134 56-206 9-146 (226)
311 PLN02476 O-methyltransferase 95.5 0.034 7.3E-07 58.3 7.0 81 540-625 117-229 (278)
312 PRK00377 cbiT cobalt-precorrin 95.4 0.066 1.4E-06 53.2 8.8 82 541-625 40-145 (198)
313 TIGR02716 C20_methyl_CrtF C-20 95.4 0.077 1.7E-06 56.4 9.7 80 540-623 148-252 (306)
314 PRK15001 SAM-dependent 23S rib 95.3 0.15 3.3E-06 55.8 11.9 93 543-638 230-355 (378)
315 PLN02589 caffeoyl-CoA O-methyl 95.3 0.064 1.4E-06 55.3 8.4 81 540-625 78-191 (247)
316 PF01861 DUF43: Protein of unk 95.2 0.2 4.3E-06 51.1 11.4 103 68-180 44-150 (243)
317 PRK10742 putative methyltransf 95.2 0.075 1.6E-06 54.5 8.4 86 57-146 78-176 (250)
318 PRK09328 N5-glutamine S-adenos 95.2 0.11 2.4E-06 54.0 10.0 46 541-586 108-153 (275)
319 TIGR01934 MenG_MenH_UbiE ubiqu 95.2 0.18 4E-06 50.1 11.1 80 541-623 39-141 (223)
320 TIGR03587 Pse_Me-ase pseudamin 95.1 0.041 8.9E-07 55.1 6.2 46 540-585 42-87 (204)
321 KOG2187 tRNA uracil-5-methyltr 95.1 0.029 6.3E-07 62.3 5.5 69 56-128 374-443 (534)
322 PRK00216 ubiE ubiquinone/menaq 95.1 0.12 2.6E-06 52.1 9.6 79 542-623 52-156 (239)
323 PRK09489 rsmC 16S ribosomal RN 95.1 0.13 2.9E-06 55.6 10.3 90 542-634 197-314 (342)
324 PRK06922 hypothetical protein; 95.0 0.13 2.7E-06 59.7 10.4 43 542-584 419-461 (677)
325 smart00138 MeTrc Methyltransfe 95.0 0.087 1.9E-06 54.9 8.5 44 540-583 98-150 (264)
326 KOG1596 Fibrillarin and relate 95.0 0.098 2.1E-06 52.9 8.2 107 64-180 152-263 (317)
327 PF05891 Methyltransf_PK: AdoM 94.9 0.063 1.4E-06 53.9 6.7 81 540-625 54-163 (218)
328 PF05971 Methyltransf_10: Prot 94.9 0.2 4.3E-06 53.0 10.7 92 56-148 88-191 (299)
329 PRK11873 arsM arsenite S-adeno 94.9 0.13 2.8E-06 53.6 9.4 80 541-623 77-181 (272)
330 KOG3201 Uncharacterized conser 94.9 0.017 3.6E-07 55.0 2.3 120 67-193 28-155 (201)
331 KOG1270 Methyltransferases [Co 94.8 0.038 8.2E-07 56.7 4.8 78 543-625 91-195 (282)
332 PF04989 CmcI: Cephalosporin h 94.8 0.029 6.3E-07 55.9 3.9 100 68-179 32-148 (206)
333 PRK13944 protein-L-isoaspartat 94.8 0.25 5.5E-06 49.3 10.7 81 542-625 73-173 (205)
334 COG2226 UbiE Methylase involve 94.8 0.18 3.8E-06 51.7 9.6 82 541-625 51-156 (238)
335 PF13649 Methyltransf_25: Meth 94.7 0.058 1.3E-06 47.2 5.3 42 545-586 1-45 (101)
336 PRK11705 cyclopropane fatty ac 94.7 0.16 3.5E-06 55.8 10.0 81 541-625 167-267 (383)
337 COG4106 Tam Trans-aconitate me 94.7 0.099 2.2E-06 52.2 7.4 83 540-625 29-129 (257)
338 COG5459 Predicted rRNA methyla 94.7 0.11 2.4E-06 55.2 8.1 128 50-183 95-230 (484)
339 KOG1099 SAM-dependent methyltr 94.6 0.064 1.4E-06 53.8 5.8 140 69-221 42-203 (294)
340 KOG2899 Predicted methyltransf 94.5 0.31 6.6E-06 49.6 10.4 49 540-588 57-105 (288)
341 PLN02490 MPBQ/MSBQ methyltrans 94.5 0.21 4.4E-06 54.0 10.0 80 541-623 113-213 (340)
342 KOG1562 Spermidine synthase [A 94.4 0.13 2.9E-06 53.6 7.7 123 66-192 119-249 (337)
343 PF13847 Methyltransf_31: Meth 94.4 0.084 1.8E-06 49.8 6.0 84 541-627 3-112 (152)
344 KOG0822 Protein kinase inhibit 94.4 0.12 2.5E-06 57.7 7.7 107 69-180 368-480 (649)
345 TIGR00406 prmA ribosomal prote 94.3 0.3 6.6E-06 51.5 10.7 80 542-625 160-259 (288)
346 smart00650 rADc Ribosomal RNA 94.1 0.19 4.2E-06 48.4 7.9 50 542-595 14-63 (169)
347 TIGR00537 hemK_rel_arch HemK-r 94.0 0.21 4.6E-06 48.6 8.1 43 541-585 19-61 (179)
348 COG0030 KsgA Dimethyladenosine 94.0 0.12 2.6E-06 53.5 6.5 51 542-596 31-81 (259)
349 PRK14121 tRNA (guanine-N(7)-)- 93.9 0.37 7.9E-06 52.9 10.4 95 541-638 122-250 (390)
350 PRK04148 hypothetical protein; 93.9 0.13 2.8E-06 47.9 5.9 43 540-584 15-58 (134)
351 PF03492 Methyltransf_7: SAM d 93.9 0.44 9.5E-06 51.5 10.9 117 67-183 15-188 (334)
352 KOG1709 Guanidinoacetate methy 93.8 0.3 6.5E-06 48.8 8.6 86 541-631 101-213 (271)
353 PF01209 Ubie_methyltran: ubiE 93.8 0.13 2.7E-06 52.7 6.4 81 540-623 46-151 (233)
354 PF11599 AviRa: RRNA methyltra 93.8 0.9 2E-05 45.5 11.8 123 56-178 39-214 (246)
355 COG0286 HsdM Type I restrictio 93.6 1.2 2.5E-05 50.8 14.2 194 30-227 152-380 (489)
356 PRK14896 ksgA 16S ribosomal RN 93.6 0.26 5.7E-06 51.1 8.4 51 542-596 30-80 (258)
357 PF07757 AdoMet_MTase: Predict 93.4 0.12 2.5E-06 46.1 4.5 32 67-99 57-88 (112)
358 cd02440 AdoMet_MTases S-adenos 93.4 0.57 1.2E-05 39.2 8.9 39 544-583 1-39 (107)
359 PRK13943 protein-L-isoaspartat 93.4 0.62 1.3E-05 50.0 11.0 44 542-585 81-125 (322)
360 KOG0024 Sorbitol dehydrogenase 93.4 0.24 5.3E-06 52.4 7.5 102 67-184 168-279 (354)
361 TIGR03533 L3_gln_methyl protei 93.3 0.15 3.2E-06 53.8 6.0 45 541-585 121-165 (284)
362 TIGR00755 ksgA dimethyladenosi 93.3 0.3 6.5E-06 50.5 8.1 52 541-596 29-80 (253)
363 KOG1540 Ubiquinone biosynthesi 93.2 0.53 1.2E-05 48.3 9.4 81 540-623 99-212 (296)
364 PRK00274 ksgA 16S ribosomal RN 93.1 0.24 5.2E-06 51.8 7.2 51 541-596 42-92 (272)
365 PRK12335 tellurite resistance 93.0 0.25 5.5E-06 52.0 7.2 76 542-622 121-220 (287)
366 COG2519 GCD14 tRNA(1-methylade 92.9 0.67 1.4E-05 47.6 9.7 94 542-638 95-210 (256)
367 PF13489 Methyltransf_23: Meth 92.7 0.22 4.7E-06 46.7 5.7 82 540-626 21-116 (161)
368 PRK00312 pcm protein-L-isoaspa 92.6 0.92 2E-05 45.3 10.4 81 541-626 78-176 (212)
369 PF03141 Methyltransf_29: Puta 92.5 0.27 5.9E-06 54.9 6.7 125 68-205 365-493 (506)
370 KOG2920 Predicted methyltransf 92.5 0.044 9.6E-07 56.9 0.6 106 67-178 115-234 (282)
371 PRK11805 N5-glutamine S-adenos 92.4 0.2 4.4E-06 53.4 5.6 44 542-585 134-177 (307)
372 COG1063 Tdh Threonine dehydrog 92.3 0.34 7.4E-06 52.6 7.3 99 68-181 168-272 (350)
373 cd00315 Cyt_C5_DNA_methylase C 92.3 0.31 6.6E-06 51.2 6.6 68 71-143 2-71 (275)
374 PF01795 Methyltransf_5: MraW 92.2 0.39 8.4E-06 51.1 7.3 76 50-128 5-81 (310)
375 PRK09880 L-idonate 5-dehydroge 92.2 0.76 1.6E-05 49.4 9.8 98 67-180 168-268 (343)
376 COG1064 AdhP Zn-dependent alco 92.2 0.69 1.5E-05 49.8 9.2 95 66-180 164-261 (339)
377 COG4301 Uncharacterized conser 92.1 1.3 2.7E-05 45.3 10.3 106 68-178 78-193 (321)
378 PF01135 PCMT: Protein-L-isoas 92.0 0.29 6.3E-06 49.2 5.8 80 542-624 73-171 (209)
379 PF05401 NodS: Nodulation prot 91.9 0.49 1.1E-05 46.9 7.1 82 540-626 42-147 (201)
380 KOG3010 Methyltransferase [Gen 91.9 0.38 8.1E-06 48.9 6.3 90 543-637 35-156 (261)
381 PF00398 RrnaAD: Ribosomal RNA 91.9 0.63 1.4E-05 48.4 8.4 70 512-596 11-81 (262)
382 KOG4058 Uncharacterized conser 91.7 0.93 2E-05 42.7 8.2 111 55-180 62-174 (199)
383 KOG1501 Arginine N-methyltrans 91.6 0.28 6.1E-06 53.5 5.4 97 70-171 68-167 (636)
384 TIGR02021 BchM-ChlM magnesium 91.6 0.53 1.2E-05 47.3 7.3 44 541-586 55-98 (219)
385 PRK04266 fibrillarin; Provisio 91.6 1.1 2.4E-05 45.6 9.6 79 542-623 73-174 (226)
386 PTZ00338 dimethyladenosine tra 91.5 0.57 1.2E-05 49.7 7.7 53 542-596 37-90 (294)
387 PLN02668 indole-3-acetate carb 91.5 1.4 3E-05 48.4 10.8 54 129-182 157-241 (386)
388 PRK06202 hypothetical protein; 91.4 0.36 7.8E-06 49.0 5.9 46 540-585 59-108 (232)
389 KOG2793 Putative N2,N2-dimethy 91.3 1.7 3.6E-05 44.9 10.5 104 69-180 87-201 (248)
390 COG2813 RsmC 16S RNA G1207 met 91.3 1.4 3E-05 46.5 10.1 93 543-638 160-281 (300)
391 PRK09424 pntA NAD(P) transhydr 91.3 1.6 3.4E-05 49.8 11.3 99 67-180 163-287 (509)
392 TIGR00452 methyltransferase, p 91.1 0.8 1.7E-05 49.0 8.4 80 542-625 122-225 (314)
393 TIGR03704 PrmC_rel_meth putati 91.1 0.4 8.6E-06 49.6 5.9 44 542-585 87-130 (251)
394 PF02636 Methyltransf_28: Puta 91.0 0.55 1.2E-05 48.5 6.9 77 69-150 19-111 (252)
395 PRK14966 unknown domain/N5-glu 90.9 0.64 1.4E-05 51.4 7.5 43 543-585 253-295 (423)
396 PF02005 TRM: N2,N2-dimethylgu 90.8 0.63 1.4E-05 51.0 7.4 99 69-178 50-154 (377)
397 TIGR00536 hemK_fam HemK family 90.8 0.43 9.3E-06 50.2 5.9 43 543-585 116-158 (284)
398 PRK11727 23S rRNA mA1618 methy 90.8 0.72 1.6E-05 49.5 7.6 48 540-587 113-160 (321)
399 PF04445 SAM_MT: Putative SAM- 90.8 0.56 1.2E-05 47.9 6.4 76 70-146 77-163 (234)
400 TIGR03438 probable methyltrans 90.7 0.84 1.8E-05 48.5 8.0 44 541-584 63-107 (301)
401 PRK14968 putative methyltransf 90.6 0.45 9.7E-06 46.1 5.5 42 542-585 24-65 (188)
402 TIGR00438 rrmJ cell division p 90.6 1.6 3.5E-05 42.7 9.4 37 541-577 32-69 (188)
403 PRK05134 bifunctional 3-demeth 90.3 1.1 2.4E-05 45.4 8.3 80 541-625 48-151 (233)
404 PF01555 N6_N4_Mtase: DNA meth 90.2 0.83 1.8E-05 45.4 7.2 54 50-108 177-230 (231)
405 cd08283 FDH_like_1 Glutathione 90.1 1.6 3.5E-05 47.8 10.0 103 67-179 183-307 (386)
406 KOG2198 tRNA cytosine-5-methyl 90.0 2.3 5E-05 46.0 10.5 120 66-186 153-304 (375)
407 COG0275 Predicted S-adenosylme 90.0 1.8 3.9E-05 45.6 9.4 75 51-128 9-85 (314)
408 PRK11524 putative methyltransf 90.0 0.97 2.1E-05 47.6 7.7 56 52-112 196-251 (284)
409 PHA03412 putative methyltransf 89.9 0.46 1E-05 48.6 5.0 44 542-585 50-96 (241)
410 PRK07580 Mg-protoporphyrin IX 89.4 0.64 1.4E-05 46.8 5.6 44 541-586 63-106 (230)
411 KOG0820 Ribosomal RNA adenine 89.3 1.2 2.5E-05 46.2 7.3 54 541-596 58-112 (315)
412 PRK05785 hypothetical protein; 89.1 0.7 1.5E-05 47.0 5.7 75 541-619 51-141 (226)
413 COG2890 HemK Methylase of poly 88.9 0.6 1.3E-05 49.1 5.2 41 544-584 113-153 (280)
414 PF03269 DUF268: Caenorhabditi 88.9 0.38 8.3E-06 46.0 3.3 106 69-180 2-113 (177)
415 COG0220 Predicted S-adenosylme 88.9 2 4.4E-05 43.8 8.8 79 543-625 50-164 (227)
416 PRK15068 tRNA mo(5)U34 methylt 88.9 1.9 4.2E-05 46.3 9.1 80 542-625 123-226 (322)
417 COG2263 Predicted RNA methylas 88.7 0.75 1.6E-05 45.2 5.2 42 543-585 47-88 (198)
418 PF06859 Bin3: Bicoid-interact 88.7 0.2 4.2E-06 44.9 1.1 44 134-178 1-44 (110)
419 TIGR01202 bchC 2-desacetyl-2-h 88.7 1.8 4E-05 45.8 8.8 88 68-180 144-233 (308)
420 PF02390 Methyltransf_4: Putat 88.6 0.91 2E-05 45.1 6.0 79 544-625 20-133 (195)
421 TIGR01444 fkbM_fam methyltrans 88.6 0.97 2.1E-05 41.8 5.9 52 545-596 2-53 (143)
422 PRK13699 putative methylase; P 88.5 1.5 3.3E-05 44.7 7.6 46 67-113 162-207 (227)
423 COG2518 Pcm Protein-L-isoaspar 88.3 2.6 5.7E-05 42.3 8.9 62 512-585 53-114 (209)
424 COG2242 CobL Precorrin-6B meth 88.2 5.4 0.00012 39.3 10.8 90 543-638 36-150 (187)
425 PHA03411 putative methyltransf 87.9 0.99 2.1E-05 47.2 5.8 44 542-585 65-108 (279)
426 TIGR00027 mthyl_TIGR00027 meth 87.8 4.1 9E-05 42.4 10.5 105 69-180 82-199 (260)
427 TIGR01983 UbiG ubiquinone bios 87.7 1.7 3.7E-05 43.5 7.5 79 541-624 45-148 (224)
428 COG5256 TEF1 Translation elong 87.6 2 4.4E-05 47.0 8.2 115 292-411 69-203 (428)
429 COG1867 TRM1 N2,N2-dimethylgua 87.6 2.1 4.6E-05 46.2 8.2 99 69-178 53-154 (380)
430 TIGR03840 TMPT_Se_Te thiopurin 87.5 3.2 6.8E-05 41.9 9.1 40 542-583 35-74 (213)
431 KOG3178 Hydroxyindole-O-methyl 87.3 1.4 3.1E-05 47.2 6.7 80 543-627 179-279 (342)
432 cd08254 hydroxyacyl_CoA_DH 6-h 87.2 3.9 8.5E-05 43.1 10.3 94 67-180 164-265 (338)
433 PRK13255 thiopurine S-methyltr 87.1 3.1 6.8E-05 42.0 8.9 40 542-583 38-77 (218)
434 KOG2671 Putative RNA methylase 86.8 2.2 4.7E-05 45.6 7.6 112 67-179 207-355 (421)
435 KOG2539 Mitochondrial/chloropl 86.8 1.7 3.8E-05 48.2 7.2 115 67-184 199-321 (491)
436 PTZ00357 methyltransferase; Pr 86.6 2.2 4.7E-05 49.4 7.9 99 70-173 702-830 (1072)
437 KOG0024 Sorbitol dehydrogenase 86.5 1 2.3E-05 47.7 5.1 82 541-623 169-271 (354)
438 PF06325 PrmA: Ribosomal prote 85.9 2.2 4.9E-05 45.2 7.3 72 506-587 131-206 (295)
439 PF00106 adh_short: short chai 85.9 6.3 0.00014 37.0 9.9 76 71-146 2-92 (167)
440 cd08237 ribitol-5-phosphate_DH 85.6 4 8.8E-05 43.8 9.4 94 67-180 162-258 (341)
441 cd08232 idonate-5-DH L-idonate 85.1 3 6.5E-05 44.4 8.0 94 68-179 165-263 (339)
442 PRK11188 rrmJ 23S rRNA methylt 85.0 7.7 0.00017 38.9 10.5 34 542-575 52-86 (209)
443 PF03059 NAS: Nicotianamine sy 84.4 2.4 5.1E-05 44.5 6.6 46 541-586 120-167 (276)
444 PRK14967 putative methyltransf 84.0 1.8 3.8E-05 43.7 5.4 42 543-585 38-79 (223)
445 PF11312 DUF3115: Protein of u 84.0 1.7 3.7E-05 46.0 5.3 112 69-182 87-246 (315)
446 COG1565 Uncharacterized conser 83.9 3 6.4E-05 45.1 7.1 91 56-149 65-164 (370)
447 COG1063 Tdh Threonine dehydrog 83.7 7.7 0.00017 42.1 10.6 79 544-625 171-269 (350)
448 TIGR03366 HpnZ_proposed putati 83.5 3.1 6.7E-05 43.3 7.1 94 67-179 119-219 (280)
449 PF05185 PRMT5: PRMT5 arginine 83.2 3.8 8.1E-05 46.1 8.0 79 542-625 187-297 (448)
450 PLN02585 magnesium protoporphy 83.2 2.1 4.5E-05 45.9 5.7 42 542-585 145-186 (315)
451 KOG1253 tRNA methyltransferase 83.0 1.1 2.4E-05 49.9 3.6 100 68-178 109-216 (525)
452 PHA01634 hypothetical protein 82.9 2.9 6.2E-05 38.6 5.5 42 68-109 28-69 (156)
453 COG3129 Predicted SAM-dependen 82.7 4.1 8.8E-05 41.4 7.1 95 52-147 59-166 (292)
454 KOG4300 Predicted methyltransf 82.5 4.7 0.0001 40.3 7.3 79 541-623 76-180 (252)
455 KOG2904 Predicted methyltransf 82.2 2.4 5.2E-05 44.1 5.3 45 540-584 147-191 (328)
456 COG0287 TyrA Prephenate dehydr 81.7 2.1 4.6E-05 45.0 5.0 46 543-589 4-51 (279)
457 cd08230 glucose_DH Glucose deh 81.6 6.3 0.00014 42.4 8.9 92 67-180 171-271 (355)
458 TIGR03451 mycoS_dep_FDH mycoth 81.1 10 0.00022 40.9 10.3 93 67-179 175-277 (358)
459 PLN02672 methionine S-methyltr 81.0 2.3 5E-05 52.6 5.6 44 542-585 119-162 (1082)
460 PF00145 DNA_methylase: C-5 cy 80.8 2.7 5.8E-05 44.4 5.6 66 71-143 2-70 (335)
461 PHA01634 hypothetical protein 80.8 4.5 9.8E-05 37.3 6.1 61 513-583 9-69 (156)
462 KOG1663 O-methyltransferase [S 80.4 6.4 0.00014 40.0 7.6 108 540-657 72-216 (237)
463 PRK05867 short chain dehydroge 80.1 15 0.00034 37.1 10.8 77 68-145 8-97 (253)
464 PF11899 DUF3419: Protein of u 80.1 2.6 5.5E-05 46.4 5.1 80 98-182 256-338 (380)
465 PRK08265 short chain dehydroge 79.8 20 0.00044 36.6 11.5 73 68-144 5-90 (261)
466 PF00107 ADH_zinc_N: Zinc-bind 79.6 7.9 0.00017 34.8 7.6 83 78-181 1-92 (130)
467 COG5379 BtaA S-adenosylmethion 79.4 3.5 7.5E-05 43.2 5.5 40 540-581 62-101 (414)
468 PRK14904 16S rRNA methyltransf 78.9 14 0.00031 41.4 10.8 44 542-585 251-295 (445)
469 cd08281 liver_ADH_like1 Zinc-d 78.6 4.8 0.0001 43.7 6.8 96 67-180 190-292 (371)
470 PRK13699 putative methylase; P 78.0 2.7 5.8E-05 42.8 4.2 60 118-177 2-71 (227)
471 cd08234 threonine_DH_like L-th 77.9 18 0.0004 38.0 10.9 96 67-180 158-259 (334)
472 PRK09072 short chain dehydroge 77.5 26 0.00056 35.7 11.5 75 68-144 4-90 (263)
473 PRK10909 rsmD 16S rRNA m(2)G96 77.5 4.6 0.0001 40.3 5.7 42 543-585 55-96 (199)
474 PF07021 MetW: Methionine bios 77.3 4.8 0.0001 39.8 5.6 41 542-583 14-54 (193)
475 COG3510 CmcI Cephalosporin hyd 77.0 11 0.00023 37.4 7.7 136 29-178 29-180 (237)
476 TIGR02081 metW methionine bios 77.0 5.1 0.00011 39.4 5.8 41 542-583 14-54 (194)
477 PF13679 Methyltransf_32: Meth 76.6 5.5 0.00012 37.1 5.7 46 540-585 24-73 (141)
478 PRK06701 short chain dehydroge 76.6 22 0.00049 37.1 11.0 111 68-179 45-182 (290)
479 PRK10309 galactitol-1-phosphat 76.6 6.6 0.00014 42.0 7.1 96 67-180 159-262 (347)
480 PRK11524 putative methyltransf 76.5 2.8 6.1E-05 44.1 4.1 62 117-178 8-80 (284)
481 PRK05876 short chain dehydroge 76.4 24 0.00053 36.5 11.1 76 68-144 5-93 (275)
482 PRK07097 gluconate 5-dehydroge 76.4 32 0.00069 35.1 11.9 76 68-144 9-97 (265)
483 TIGR02822 adh_fam_2 zinc-bindi 76.4 17 0.00036 38.9 10.1 90 67-179 164-255 (329)
484 cd08255 2-desacetyl-2-hydroxye 76.3 16 0.00034 37.4 9.6 95 67-180 96-192 (277)
485 PLN02740 Alcohol dehydrogenase 76.3 6.3 0.00014 43.0 6.9 96 67-180 197-302 (381)
486 PRK00050 16S rRNA m(4)C1402 me 76.1 7.2 0.00016 41.4 6.9 52 543-596 21-73 (296)
487 COG4076 Predicted RNA methylas 75.7 4.6 9.9E-05 39.7 4.8 52 543-596 34-85 (252)
488 PRK10901 16S rRNA methyltransf 75.5 7.2 0.00016 43.6 7.2 44 542-585 245-288 (427)
489 PRK07063 short chain dehydroge 75.2 33 0.00072 34.8 11.6 76 68-144 6-96 (260)
490 cd05188 MDR Medium chain reduc 74.9 9.3 0.0002 38.5 7.3 93 67-180 133-234 (271)
491 PRK07109 short chain dehydroge 74.7 28 0.00061 37.3 11.3 76 68-144 7-95 (334)
492 PRK08339 short chain dehydroge 74.6 36 0.00078 34.9 11.7 75 68-143 7-94 (263)
493 cd08239 THR_DH_like L-threonin 74.4 8.5 0.00018 40.9 7.2 98 67-180 162-264 (339)
494 PRK08085 gluconate 5-dehydroge 74.3 40 0.00086 34.1 11.8 76 68-144 8-96 (254)
495 PRK07576 short chain dehydroge 74.1 34 0.00073 35.0 11.3 73 68-142 8-94 (264)
496 PRK07814 short chain dehydroge 73.7 34 0.00074 34.9 11.3 74 68-143 9-96 (263)
497 COG3963 Phospholipid N-methylt 73.4 9.7 0.00021 36.9 6.3 47 540-586 47-94 (194)
498 PRK05786 fabG 3-ketoacyl-(acyl 73.3 33 0.00071 34.1 10.8 109 68-179 4-136 (238)
499 PRK03522 rumB 23S rRNA methylu 73.0 6.1 0.00013 42.2 5.6 42 542-585 174-215 (315)
500 PRK12939 short chain dehydroge 72.8 32 0.00069 34.4 10.7 74 68-143 6-93 (250)
No 1
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-49 Score=422.44 Aligned_cols=385 Identities=39% Similarity=0.589 Sum_probs=336.0
Q ss_pred hhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCC-eEEEECCCcchHHHHHHHcCCCeEEE
Q 006149 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (659)
Q Consensus 18 lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~-~ILDiGCG~G~~s~~La~~g~~~Vtg 96 (659)
+|++..+|.+..||+.+|..++ ..+++||++|..++..+.+++. +.. ++|.+|||++.++..+++.|+.+|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7899999999999999999996 7999999999999999999996 445 99999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchH---HHHHHHHHHHhccccCeE
Q 006149 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 97 vD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~---~~~~~l~ei~rvLkpGG~ 173 (659)
+|+|+.+++.|..++....+.+.+..+|+..+.|++++||+|+++|++|++..++.... .+..++.++.|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 99999999999998877778899999999999999999999999999999988775544 478889999999999999
Q ss_pred EEEEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCCCccEEEEEEecCCccccccccccccccccCCcchHHHHHHH
Q 006149 174 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 253 (659)
Q Consensus 174 lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~ 253 (659)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 99888764
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhccccccccccCCCceeEEEeCCCCCCeeEEEEEEEeCCCCCCCCcccEEEEEeeC
Q 006149 254 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 333 (659)
Q Consensus 254 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 333 (659)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 9999
Q ss_pred CCccccccCChhhHHHHHHhcCCCEEEEEEeCCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCcceee
Q 006149 334 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 411 (659)
Q Consensus 334 gre~ewlfst~eG~~~l~~sa~~~Rli~v~l~~~~~~~~--~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~~~~i~~r~ 411 (659)
||+++|+|+++.|++++..+++..||++|++|+++.+.. +++++.++++.+..+.|+++++..+.|+++.|++++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~~--- 245 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDVG--- 245 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhcccccccccc---
Confidence 999999999999999999999999999999999999999 899999999999999999998888999999875533
Q ss_pred EEEEEecCcccCEEEEEeeeccCCCCcccCCCCcCceeEEEEeccCCCceeceEEeeccCCCCCcchhhhhhhccccccc
Q 006149 412 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 491 (659)
Q Consensus 412 ~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 491 (659)
.|||.+..|.|+||||+.-.
T Consensus 246 -------------------------------------~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 246 -------------------------------------VRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred -------------------------------------cccccCCCCcceecCchhcc-----------------------
Confidence 57777777999999995110
Q ss_pred cccCcccCCCCCCccceecCCccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEE
Q 006149 492 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 571 (659)
Q Consensus 492 k~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~V 571 (659)
+.-||+|+||++|++|++|+...... ..+....+||||+|||.||.|||.++|..++++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~~--~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPPQ--KLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCch--hccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 12289999999999999998775532 3467789999999999999999999999999999
Q ss_pred ecChhHHHHHHhhcCCCCCCCeeEE----------------------------------------ecccchhHHHHHHHh
Q 006149 572 ELDLTMLNLAEDYFGFTQDKSLKVF----------------------------------------NHLFCLQLEEDVNLV 611 (659)
Q Consensus 572 EiDp~V~~vA~~~Fgl~~d~rl~vf----------------------------------------~~l~~~~f~~~~~~~ 611 (659)
||||+|+++|++||||.++.|.+|. ....+..|...+|.+
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~ 405 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI 405 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhc
Confidence 9999999999999999987777433 113467788899999
Q ss_pred hccCCCCcEEEecCchHHH----HHHHhhcc-CCcc
Q 006149 612 LFGLSSESCIKDNSFPEAA----VQLGKLVK-FQHL 642 (659)
Q Consensus 612 Lf~~~~~g~~~~n~~~~~~----~~l~~~~~-f~~~ 642 (659)
| .|.|++..|.-.... ..+.++.+ |++.
T Consensus 406 l---~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l 438 (482)
T KOG2352|consen 406 L---PPRGMFIINLVTRNSSFKDEVLMNLAKVFPQL 438 (482)
T ss_pred c---CccceEEEEEecCCcchhHHHHHhhhhhhHHH
Confidence 9 999999999832222 23455555 6543
No 2
>PRK04457 spermidine synthase; Provisional
Probab=99.77 E-value=4.4e-18 Score=176.30 Aligned_cols=137 Identities=22% Similarity=0.301 Sum_probs=114.0
Q ss_pred eEEEEeccCCCceeceEEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCccceecCCccchHHHHHHHHHHhh
Q 006149 449 FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTL 528 (659)
Q Consensus 449 ~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l 528 (659)
+|.|.|. .+.+||.+.+. ||..|.++|+++|++++.+
T Consensus 27 ~R~L~f~--~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~~ 63 (262)
T PRK04457 27 VRSLHLG--SDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLLF 63 (262)
T ss_pred EEEEEEC--CCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHhc
Confidence 8999994 56899998875 6788999999999976655
Q ss_pred hhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE-----------
Q 006149 529 ISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF----------- 596 (659)
Q Consensus 529 ~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf----------- 596 (659)
. +.|++||+||+|+|++++++++++|..+|++|||||+|+++|++||+++. ++|++++
T Consensus 64 ~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 64 N----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred C----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 2 45789999999999999999999999999999999999999999999875 4777332
Q ss_pred ------------------ecccchhHHHHHHHhhccCCCCcEEEecCchHH---HHHHHhhcc-CCc
Q 006149 597 ------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEA---AVQLGKLVK-FQH 641 (659)
Q Consensus 597 ------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~~~~---~~~l~~~~~-f~~ 641 (659)
.++.+.+|++.|+++| +|+|+++.|.+... ...++++.+ |++
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L---~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNAL---SSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhc---CCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 2356789999999999 99999999986433 334666655 764
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=5e-18 Score=171.56 Aligned_cols=120 Identities=25% Similarity=0.464 Sum_probs=105.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~ 131 (659)
+..+...+.. .++.+|||+|||||.++..+++. |.++|+++|+|+.|++.++++....+ .+++|+++|+.++||+
T Consensus 40 r~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~ 116 (238)
T COG2226 40 RRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFP 116 (238)
T ss_pred HHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCC
Confidence 4445555544 47899999999999999999987 66799999999999999999887654 3499999999999999
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
|++||+|.+..+|.++.+.+ ++|+|++|+|||||+++|.+++++.
T Consensus 117 D~sFD~vt~~fglrnv~d~~-------~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDID-------KALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCccCEEEeeehhhcCCCHH-------HHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999998754 9999999999999999999998754
No 4
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.73 E-value=2e-17 Score=156.29 Aligned_cols=167 Identities=29% Similarity=0.461 Sum_probs=125.5
Q ss_pred CCCHhhHHHHHhhcC-----CCCcc-ccccchhHHHHHHHHhhCCC-----CCCCCCeEEEECCCcchHHHHHHHcCCCe
Q 006149 25 FTSKENWDKFFTIRG-----IGDSF-EWYAEWPQLRDPLISLIGAP-----TSSPPPQILVPGCGNSRLSEHLYDAGFHG 93 (659)
Q Consensus 25 f~~~eyWd~~y~~~~-----~~~~f-ewy~~~~~l~~~l~~~l~~~-----~~~~~~~ILDiGCG~G~~s~~La~~g~~~ 93 (659)
.+.++||+..|.... +++.- -||++-. ...+.+|+... -.....+|||+|||||.+...|++.|+..
T Consensus 15 LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~a--e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~ 92 (227)
T KOG1271|consen 15 LGTKSYWDAAYELELTNFREHGDEGEVWFGEDA--EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQS 92 (227)
T ss_pred cchHHHHHHHHHHHHhhcccCCCccceecCCcH--HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCC
Confidence 578999999998762 11111 2888633 33344444321 02234499999999999999999999854
Q ss_pred -EEEEcCCHHHHHHHHHHhhcCC-C-CcEEEEeecCCCCCCCCcccEEEecccccccCCcccchH-HHHHHHHHHHhccc
Q 006149 94 -ITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK-LGNQYLSEVKRLLK 169 (659)
Q Consensus 94 -VtgvD~S~~~i~~~~~~~~~~~-~-~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~-~~~~~l~ei~rvLk 169 (659)
.+|+|+|+.+++-|+..+.+.. + .|+|.+.|+.+..+..+.||+|+++|+++++.-..+.+. ....++..+.++|+
T Consensus 93 ~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~ 172 (227)
T KOG1271|consen 93 KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS 172 (227)
T ss_pred CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC
Confidence 9999999999997766654444 3 399999999998888899999999999999864322222 24789999999999
Q ss_pred cCeEEEEEEcCCchhhcchhhhhccC
Q 006149 170 SGGKFVCLTLAESHVLGLLFPKFRFG 195 (659)
Q Consensus 170 pGG~lvi~~~~~~~~~~~l~~~~~~~ 195 (659)
|||+|+|.+. +|...++.+.|..+
T Consensus 173 ~~gifvItSC--N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 173 PGGIFVITSC--NFTKDELVEEFENF 196 (227)
T ss_pred CCcEEEEEec--CccHHHHHHHHhcC
Confidence 9999999987 46667788877554
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.9e-16 Score=164.47 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----
Q 006149 514 LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---- 589 (659)
Q Consensus 514 L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---- 589 (659)
..+.||+++++ +++++ +++|++|||||||.|++.+.+.+|.+-.++++|||||.|+++||+||+.+.
T Consensus 58 de~~yhEml~h-~~~~a--------h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~ 128 (282)
T COG0421 58 DEFIYHEMLAH-VPLLA--------HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD 128 (282)
T ss_pred hhHHHHHHHHh-chhhh--------CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC
Confidence 45679988876 44444 378899999999999999999999998899999999999999999998886
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|||+++. ..||+.+||+.|+++| +++|++++|+
T Consensus 129 dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L---~~~Gi~v~q~ 190 (282)
T COG0421 129 DPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRAL---KEDGIFVAQA 190 (282)
T ss_pred CCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhc---CCCcEEEEec
Confidence 8999433 4599999999999999 9999999994
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=4.3e-17 Score=165.86 Aligned_cols=118 Identities=26% Similarity=0.457 Sum_probs=88.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~ 132 (659)
.+.+.+.. .++.+|||+|||||.++..+++. + ...|+++|+|+.|++.++++....+ .+++++++|+.++|+++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34555543 57889999999999999999886 3 3689999999999999998876543 58999999999999999
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++||+|++...++++.+.. ++++|++|+|||||++++++++.+.
T Consensus 115 ~sfD~v~~~fglrn~~d~~-------~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRE-------RALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp T-EEEEEEES-GGG-SSHH-------HHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CceeEEEHHhhHHhhCCHH-------HHHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999999999999987644 8999999999999999999997553
No 7
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=1.6e-15 Score=152.41 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=104.3
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH
Q 006149 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (659)
Q Consensus 29 eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~ 108 (659)
+||+++|+.. ...|... .....+.+++......++.+|||+|||.|..+..|+++|+ +|||+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~----~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEG----QIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcC----CCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 4899999765 2345422 1122233333221112567999999999999999999999 8999999999999764
Q ss_pred HHhhc-------------CCCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEE
Q 006149 109 RRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 109 ~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+.+.. ...+++++++|+.+++.. .+.||.|++.++++++.... +..+++.+.++|||||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGARQ 148 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCeE
Confidence 43211 134689999999998643 46799999999999885443 789999999999999998
Q ss_pred EEEEcC
Q 006149 175 VCLTLA 180 (659)
Q Consensus 175 vi~~~~ 180 (659)
+++++.
T Consensus 149 ll~~~~ 154 (213)
T TIGR03840 149 LLITLD 154 (213)
T ss_pred EEEEEE
Confidence 887764
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=2.1e-15 Score=156.36 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=98.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhh----cCCCCcEEEEeecCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTSMQ 129 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~----~~~~~i~~~~~D~~~l~ 129 (659)
.+.+++.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++.. ....+++++++|+.++|
T Consensus 64 ~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 64 MAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 34445543 46789999999999999988875 3 3589999999999998876642 12357999999999999
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
+++++||+|++..+++++.++. .+++++.|+|||||++++.++..+.
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~-------~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRL-------KAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CCCCCEeEEEEecccccCCCHH-------HHHHHHHHHcCcCcEEEEEECCCCC
Confidence 9999999999999999987644 8999999999999999999987543
No 9
>PLN02823 spermine synthase
Probab=99.64 E-value=2.7e-15 Score=160.01 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.||++|++. +++. +++|++|||||+|+|++++++.++.+..+|++|||||+|+++||+||++. +|
T Consensus 86 e~~YhE~l~h~-~l~~--------~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~d 156 (336)
T PLN02823 86 EFVYHESLVHP-ALLH--------HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCD 156 (336)
T ss_pred HHHHHHHHHhH-HHhh--------CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccC
Confidence 34699999874 3433 36789999999999999999999887779999999999999999999876 47
Q ss_pred CCeeEE-------------------------------ecccchhHHH-HHHHhhccCCCCcEEEecCc-------hHH-H
Q 006149 591 KSLKVF-------------------------------NHLFCLQLEE-DVNLVLFGLSSESCIKDNSF-------PEA-A 630 (659)
Q Consensus 591 ~rl~vf-------------------------------~~l~~~~f~~-~~~~~Lf~~~~~g~~~~n~~-------~~~-~ 630 (659)
+|++++ .+||+.+||+ .|+++| +++|+++.|.- +.. .
T Consensus 157 prv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L---~p~Gvlv~q~~s~~~~~~~~~~~ 233 (336)
T PLN02823 157 KRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKL---NPGGIFVTQAGPAGILTHKEVFS 233 (336)
T ss_pred CceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhc---CCCcEEEEeccCcchhccHHHHH
Confidence 787332 2478999999 999999 99999999862 222 3
Q ss_pred HHHHhhcc-CCcc
Q 006149 631 VQLGKLVK-FQHL 642 (659)
Q Consensus 631 ~~l~~~~~-f~~~ 642 (659)
..++++.+ |+++
T Consensus 234 ~i~~tl~~vF~~v 246 (336)
T PLN02823 234 SIYNTLRQVFKYV 246 (336)
T ss_pred HHHHHHHHhCCCE
Confidence 35566656 8865
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=6e-16 Score=133.49 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.1
Q ss_pred EEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCccc
Q 006149 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPEL 152 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~ 152 (659)
||+|||+|..+..|++.+..+|+++|+++.+++.++++.. ..++.+.++|+.++|+++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK--NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT--TSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc--ccCchheeehHHhCccccccccccccccceeeccC---
Confidence 8999999999999999955699999999999998877663 34566999999999999999999999999999832
Q ss_pred chHHHHHHHHHHHhccccCeEEEE
Q 006149 153 GHKLGNQYLSEVKRLLKSGGKFVC 176 (659)
Q Consensus 153 ~~~~~~~~l~ei~rvLkpGG~lvi 176 (659)
..++++++.|+|||||++++
T Consensus 76 ----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 ----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEE
T ss_pred ----HHHHHHHHHHHcCcCeEEeC
Confidence 56999999999999999986
No 11
>PRK00536 speE spermidine synthase; Provisional
Probab=99.63 E-value=1.4e-15 Score=156.21 Aligned_cols=97 Identities=8% Similarity=-0.011 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
++-||++|+| ++|++ +++|+||||||+|-|+..|.+.+| |. +|+.||||++|+++||+||+-- +|
T Consensus 55 EfiYHEmLvH-ppl~~--------h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~D 123 (262)
T PRK00536 55 LHIESELLAH-MGGCT--------KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_pred hhhHHHHHHH-HHHhh--------CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence 5779999998 56655 489999999999955555555555 44 9999999999999999999542 68
Q ss_pred CCeeEE----------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF----------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf----------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
||++++ +.+++.+||+.|+++| +++|+++.|+
T Consensus 124 pRv~l~~~~~~~~~~~fDVIIvDs~~~~~fy~~~~~~L---~~~Gi~v~Qs 171 (262)
T PRK00536 124 KNFTHAKQLLDLDIKKYDLIICLQEPDIHKIDGLKRML---KEDGVFISVA 171 (262)
T ss_pred CCEEEeehhhhccCCcCCEEEEcCCCChHHHHHHHHhc---CCCcEEEECC
Confidence 888554 4478999999999999 9999999988
No 12
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.62 E-value=9e-16 Score=157.51 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
...||++|++..++ . +++|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++||+.. +|
T Consensus 59 e~~y~e~l~h~~~~-~--------~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d 129 (246)
T PF01564_consen 59 EFIYHEMLVHPPLL-L--------HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDD 129 (246)
T ss_dssp HHHHHHHHHHHHHH-H--------SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGS
T ss_pred hHHHHHHHhhhHhh-c--------CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCC
Confidence 47899999874433 3 36899999999999999999999987789999999999999999999763 47
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|++++ ..||+.+||+.|+++| +++|+++.|.
T Consensus 130 ~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L---~~~Gv~v~~~ 191 (246)
T PF01564_consen 130 PRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRL---KPDGVLVLQA 191 (246)
T ss_dssp TTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhc---CCCcEEEEEc
Confidence 788333 2489999999999999 9999999986
No 13
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=6.7e-15 Score=148.41 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=105.3
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.++|++.|... . ..|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|||+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~--~--~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAEN--Q--IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCC--C--CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 467999999876 2 334322 2333344444321123567999999999999999999998 89999999999997
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.... ...++++.++|+.+++.. .+.||+|++..+++++.... +.++++.+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 6443211 135689999999998543 36899999999999986443 7899999999999999
Q ss_pred EEEEEEc
Q 006149 173 KFVCLTL 179 (659)
Q Consensus 173 ~lvi~~~ 179 (659)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7666554
No 14
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=1.4e-14 Score=145.99 Aligned_cols=143 Identities=15% Similarity=0.259 Sum_probs=110.3
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
.+.+||+++|++. ... |... .....|.+++......++.+||++|||.|..+.+|++.|+ +|+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~--~~~--f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQND--DVG--FCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcC--CCC--CccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHH
Confidence 4678999999976 233 4332 1222333443332223568999999999999999999999 8999999999999
Q ss_pred HHHHHhh-------------cCCCCcEEEEeecCCCCCC---CCcccEEEecccccccCCcccchHHHHHHHHHHHhccc
Q 006149 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 106 ~~~~~~~-------------~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
.+.+.+. ..+.++++.++|+.+++.. .+.||+|++.++|.++.... +.++.+.+.++|+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-----R~~Y~~~l~~lL~ 154 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-----RTNYAKMMLEVCS 154 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-----HHHHHHHHHHHhC
Confidence 8766431 1235799999999998632 26899999999999996543 8899999999999
Q ss_pred cCeEEEEEEcC
Q 006149 170 SGGKFVCLTLA 180 (659)
Q Consensus 170 pGG~lvi~~~~ 180 (659)
|||.++++++.
T Consensus 155 pgg~llll~~~ 165 (226)
T PRK13256 155 NNTQILLLVME 165 (226)
T ss_pred CCcEEEEEEEe
Confidence 99999998874
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.59 E-value=1.3e-14 Score=156.15 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=93.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||||||+|.++..|++....+|+|+|+|+.+++.++++....+ ++++++++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4678999999999999999998633499999999999998877665443 47999999999999999999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.+. .++++++.++|||||++++.++.
T Consensus 197 ~h~~d~-------~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHMPDK-------RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hccCCH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 998764 48999999999999999998865
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=1.4e-14 Score=143.94 Aligned_cols=112 Identities=24% Similarity=0.365 Sum_probs=92.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sF 135 (659)
+.+.+.. .++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.+++.....+ .++++.++|+.+++++ ++|
T Consensus 22 l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 96 (197)
T PRK11207 22 VLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEY 96 (197)
T ss_pred HHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCc
Confidence 4455543 3568999999999999999999987 99999999999998877665544 4689999999888774 679
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
|+|++..+++++...+ ...+++++.++|+|||++++++
T Consensus 97 D~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 97 DFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999998875433 6799999999999999976654
No 17
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.3e-14 Score=144.26 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=107.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC------CeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeec
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDM 125 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~------~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~ 125 (659)
+...+.. .++.++||++||||.++..+.+. +. ++|+.+|+++.|+...+++..+.. ..+.|+++|+
T Consensus 92 ~v~~L~p---~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 92 FVSKLGP---GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred hhhccCC---CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 4445543 67799999999999999888876 22 689999999999999988875532 3589999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~ 200 (659)
.++||++.+||.....+.+.++.+.+ +++++++|+|||||+|.|.+++. ...+.+..+-..|...+
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~-------k~l~EAYRVLKpGGrf~cLeFsk--v~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQ-------KALREAYRVLKPGGRFSCLEFSK--VENEPLKWFYDQYSFDV 234 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHH-------HHHHHHHHhcCCCcEEEEEEccc--cccHHHHHHHHhhhhhh
Confidence 99999999999999999999988765 99999999999999999999973 33334455544454443
No 18
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=1.7e-14 Score=129.31 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=86.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeec-CCCCCCCCcccEEEecc-
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQFMDETFDVILDKG- 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~--~~~~~i~~~~~D~-~~l~~~~~sFDvVi~~g- 142 (659)
|+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++.. ...++++++++|+ ..... .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 4689999999999999999993 44589999999999999988873 3347999999999 33333 35799999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+++++...+ ...++++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 666544321 26789999999999999999876
No 19
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.57 E-value=1.8e-14 Score=145.10 Aligned_cols=141 Identities=26% Similarity=0.379 Sum_probs=106.9
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
+.+||++.|++. ..+|......+.+...+.. +.. .++.+||++|||.|.....|++.|+ +|+|+|+|+.+|++
T Consensus 2 ~~~~W~~~w~~~--~~~w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEG--QTPWDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CHHHHHHHHhcC--CCCCCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 368999999987 3444444445566655555 322 4677999999999999999999998 99999999999998
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCCC-CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.+.. ...+|++.++|+.+++... ++||+|++.++|.++.... +.++.+.+.++|+|||
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCCCC
Confidence 8655432 1136899999999986433 5899999999999997554 8899999999999999
Q ss_pred EEEEEEc
Q 006149 173 KFVCLTL 179 (659)
Q Consensus 173 ~lvi~~~ 179 (659)
.++++++
T Consensus 150 ~~lLi~l 156 (218)
T PF05724_consen 150 RGLLITL 156 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9555554
No 20
>PLN02366 spermidine synthase
Probab=99.56 E-value=5e-14 Score=148.81 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=82.3
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~d 590 (659)
.+.||++|++ ++++. +++|++||+||+|+|++++.+.++.+..+|++|||||.|+++||+||+. .+|
T Consensus 74 e~~Y~e~l~h-~~l~~--------~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQEMITH-LPLCS--------IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHHHHHH-HHHhh--------CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 5789997776 55543 3678999999999999999999885557999999999999999999964 256
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|++++ .+|++.+|++.|+++| +|+|+++.|+
T Consensus 145 pRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L---~pgGvlv~q~ 206 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARAL---RPGGVVCTQA 206 (308)
T ss_pred CceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc---CCCcEEEECc
Confidence 777332 2478899999999999 9999999876
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=7.4e-14 Score=141.83 Aligned_cols=125 Identities=23% Similarity=0.315 Sum_probs=101.1
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (659)
.....+..+...+.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++..... +++.++++|+
T Consensus 29 ~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 105 (231)
T TIGR02752 29 RHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA 105 (231)
T ss_pred chHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech
Confidence 333344455666654 56789999999999999999876 3 3589999999999998877764433 5799999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.++++++++||+|++..+++++.+. .++++++.++|+|||++++.+...+.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPDY-------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9988888999999999988887654 48999999999999999998876543
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.55 E-value=8.2e-15 Score=146.02 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=98.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||-|.++..||+.|+ +|||+|+++.+|+.++.++.+.+-.+.|.+..+.++....++||+|+|..++.|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 689999999999999999999996 9999999999999999888777777889999999887666899999999999999
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
++++ .++..+.+++||||.+++++..+
T Consensus 138 ~dp~-------~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPE-------SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHH-------HHHHHHHHHcCCCcEEEEecccc
Confidence 9876 89999999999999999999874
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=7.5e-14 Score=136.99 Aligned_cols=130 Identities=25% Similarity=0.389 Sum_probs=99.0
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~ 106 (659)
..+||.+.|... ..+.. +.+.++. .++.++||+|||.|+.+..|+..|+ +|+++|+|+.+++.
T Consensus 5 ~~~y~~kky~~~---------~~hs~----v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 5 PEDYFHKKYGLT---------PTHSE----VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp STTHHHHHHTB-------------HH----HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred HHHHHHHhhCCC---------CCcHH----HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 356777766543 11222 4444443 3568999999999999999999999 99999999999999
Q ss_pred HHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 107 MLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 107 ~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+.+....-.+++.+.|+.+..++ +.||+|++..+++++..+. +.++++.+...++|||++++.+.
T Consensus 68 l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 68 LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEe
Confidence 8777766667799999999998875 7899999998999886554 78999999999999999988765
No 24
>PRK00811 spermidine synthase; Provisional
Probab=99.54 E-value=9.2e-14 Score=145.74 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-----CCC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 589 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-----l~~ 589 (659)
.+.||++|++ ++++. +++|++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||. +.+
T Consensus 59 e~~Y~e~l~h-~~~~~--------~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~ 129 (283)
T PRK00811 59 EFIYHEMMTH-VPLFA--------HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD 129 (283)
T ss_pred hhhHHHHhhh-HHHhh--------CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc
Confidence 4789997776 44443 367899999999999999999887666799999999999999999994 235
Q ss_pred CCCeeEE-----------------------------ecccchhHHHHHHHhhccCCCCcEEEecCc-----hH-HHHHHH
Q 006149 590 DKSLKVF-----------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNSF-----PE-AAVQLG 634 (659)
Q Consensus 590 d~rl~vf-----------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~~-----~~-~~~~l~ 634 (659)
|+|++++ .+|++.+|++.|+++| +++|+++.|.- +. ....++
T Consensus 130 d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L---~~gGvlv~~~~~~~~~~~~~~~i~~ 206 (283)
T PRK00811 130 DPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRAL---KEDGIFVAQSGSPFYQADEIKDMHR 206 (283)
T ss_pred CCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhc---CCCcEEEEeCCCcccCHHHHHHHHH
Confidence 7777332 2578899999999999 99999999862 22 222444
Q ss_pred hhcc-CCccc
Q 006149 635 KLVK-FQHLE 643 (659)
Q Consensus 635 ~~~~-f~~~~ 643 (659)
++.+ |+++.
T Consensus 207 tl~~~F~~v~ 216 (283)
T PRK00811 207 KLKEVFPIVR 216 (283)
T ss_pred HHHHHCCCEE
Confidence 5545 77653
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=4e-14 Score=134.58 Aligned_cols=106 Identities=28% Similarity=0.428 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCcchHHHHHHH-cC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~-~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~ 141 (659)
+.+.+|||+|||+|.++..|++ .+ ..+++|+|+|+.+++.+++++...+ ++++++++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3689999999999999988765544 58999999999987 65 899999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++++.+.. .+++++.++|++||++++.+..
T Consensus 81 ~~l~~~~~~~-------~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPE-------KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHH-------HHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHH-------HHHHHHHHHcCCCcEEEEEECC
Confidence 9998876544 8999999999999999999876
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.54 E-value=5.5e-14 Score=139.53 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+.+.+.. .++.+|||+|||+|.++..|++.|. +|+|+|+|+.+++.++++....+-++.+.++|+...+++ ++|
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 34555544 3567999999999999999999987 999999999999988776655444588888898776664 689
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+|++..+++++.... ...+++++.++|+|||++++++.
T Consensus 96 D~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999998875433 67999999999999999777653
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=9.1e-14 Score=143.19 Aligned_cols=114 Identities=20% Similarity=0.349 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCc
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDET 134 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~s 134 (659)
..+.+.+.. .+..+|||+|||+|.++..++..+. +|+++|+|+.+++.++++. ....++++|+.++++++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCc
Confidence 344455543 3567999999999999999988775 9999999999998776553 2457899999999998899
Q ss_pred ccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
||+|++..+++++.+.. .++.++.++|+|||.+++.++....
T Consensus 104 fD~V~s~~~l~~~~d~~-------~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLS-------TALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEEEEECchhhhcCCHH-------HHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 99999999999876644 8999999999999999999987554
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.52 E-value=3.8e-14 Score=150.54 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=93.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||||||+|.++..|+..|. +|+|||+++.+++.++++..... .++.++++|+.++++++++||+|++.++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 567999999999999999998876 89999999999998876654322 479999999999988888999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|+.++. .+++++.++|||||.+++.+...
T Consensus 210 Hv~d~~-------~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 210 HVANPA-------EFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hcCCHH-------HHHHHHHHHcCCCcEEEEEECCc
Confidence 998765 89999999999999999998764
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=142.77 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|..+..++.....+|+++|+|+.+++.++++... ..++.+.++|+.+.++++++||+|++..++.|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 57889999999999999988765224899999999999988776543 46799999999999999999999999888888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+...+ ...++++++++|||||++++.++..
T Consensus 130 ~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 LSYAD-----KKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCHHH-----HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 65322 5699999999999999999998754
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=1.9e-13 Score=141.31 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++.+++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999976 99999999999999887765543 57899999998873 567899999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+++.++. .+++++.++|||||++++..+...
T Consensus 123 ~~~~~~~-------~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPK-------SVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHH-------HHHHHHHHHcCCCeEEEEEEECcc
Confidence 9987654 899999999999999998876643
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.49 E-value=2e-13 Score=142.47 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=107.2
Q ss_pred hhhhcccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC----CC
Q 006149 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----FH 92 (659)
Q Consensus 17 ~lp~~~~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g----~~ 92 (659)
.+|..........||...+..+ ..|.+.+.|..+...+...+......+..+|||+|||+|.++..+++.. ..
T Consensus 37 ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~ 113 (272)
T PRK11088 37 LLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTM 113 (272)
T ss_pred eccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCC
Confidence 3454334444556777777655 3444555566666666555543112355789999999999999988652 23
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 93 GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
.++|+|+|+.+++.+.++ .+++.+.++|+.++|+++++||+|++..+ + ..++++.|+|||||
T Consensus 114 ~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpgG 175 (272)
T PRK11088 114 QLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYA------P--------CKAEELARVVKPGG 175 (272)
T ss_pred eEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecC------C--------CCHHHHHhhccCCC
Confidence 799999999999877544 36799999999999999999999997532 1 23688999999999
Q ss_pred EEEEEEcCCchh
Q 006149 173 KFVCLTLAESHV 184 (659)
Q Consensus 173 ~lvi~~~~~~~~ 184 (659)
++++++....+.
T Consensus 176 ~li~~~p~~~~l 187 (272)
T PRK11088 176 IVITVTPGPRHL 187 (272)
T ss_pred EEEEEeCCCcch
Confidence 999999876664
No 32
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=4.6e-14 Score=124.74 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=80.9
Q ss_pred EEEECCCcchHHHHHHHc---CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc-ccc
Q 006149 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDA 146 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~---g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~-l~~ 146 (659)
|||+|||+|..+..+++. +. .+++++|+|+.+++.++++....+.+++++++|+.++++.+++||+|++.+. +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999876 32 6999999999999999888776667999999999999888899999999655 888
Q ss_pred cCCcccchHHHHHHHHHHHhccccCe
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+.+.+ ..++++++.++|+|||
T Consensus 81 ~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCHHH-----HHHHHHHHHHHhCCCC
Confidence 65544 7899999999999998
No 33
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.48 E-value=1.8e-13 Score=133.10 Aligned_cols=141 Identities=19% Similarity=0.245 Sum_probs=102.0
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHH---HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHH
Q 006149 27 SKENWDKFFTIRGIGDSFEWYAEWPQLR---DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (659)
Q Consensus 27 ~~eyWd~~y~~~~~~~~fewy~~~~~l~---~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~ 103 (659)
+.++|++.++.. +++.....+-+-+ ..+...+.. ..-.++||+|||+|.++..|+.+.. .++++|+|+.+
T Consensus 5 ~~~~l~~~la~~---DPW~~~~~~YE~~K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~A 77 (201)
T PF05401_consen 5 NYQLLNRELAND---DPWGFETSWYERRKYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRA 77 (201)
T ss_dssp HHHHHHHHHTSS---SGGGTTT-HHHHHHHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHH
T ss_pred HHHHHHHHhCCC---CCCCCCCCHHHHHHHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHH
Confidence 467888887765 4544322222222 223333544 4567999999999999999999964 89999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 104 ISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.++++.. ..++|+|+++|+.+. .|+++||+|++..++|++.+.+ .+..++..+...|+|||.+++.+..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~----~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAE----DLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHH----HHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999988875 458999999999885 4679999999999999997633 2778999999999999999998865
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=2.6e-13 Score=144.77 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHh--hcCCCCcEEEEeecCCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN--VRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~--~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
.+...+.. .++.+|||||||+|.++..++..|...|+|+|+|+.++.+..... .....++.++.+|+.++++ ++
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 34445543 357899999999999999999988778999999999987654332 2224579999999999988 78
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+||+|++.++++|+.++. .+++++++.|+|||.+++.++
T Consensus 189 ~FD~V~s~~vl~H~~dp~-------~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL-------DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEECChhhccCCHH-------HHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999987654 899999999999999998764
No 35
>PRK01581 speE spermidine synthase; Validated
Probab=99.47 E-value=2.5e-13 Score=144.37 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------ 588 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------ 588 (659)
++-||++|++. ++.. +++|++||+||+|+|.+++.+.++.+..+|++|||||+|+++|++||.++
T Consensus 133 E~iYHE~Lvhp-~m~~--------h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~ 203 (374)
T PRK01581 133 EQIYHEALVHP-IMSK--------VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA 203 (374)
T ss_pred HHHHHHHHHHH-HHHh--------CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence 45699999984 4433 37889999999998888888888877779999999999999999988764
Q ss_pred -CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 -QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 -~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+|++++ ..||+.+|++.|++.| +|+|+++.+.
T Consensus 204 ~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~L---kPgGV~V~Qs 268 (374)
T PRK01581 204 FFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFL---TEDGAFVCQS 268 (374)
T ss_pred CCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhc---CCCcEEEEec
Confidence 47788332 2378899999999999 9999998876
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=9.7e-14 Score=145.99 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=89.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|..+..|++.|. +|+|+|+|+.+++.++++....+.++++.+.|+...++ +++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 346999999999999999999986 99999999999998887776656688999999988765 6889999999999987
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.... ...+++++.++|+|||+++++.
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 5433 6799999999999999977654
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=5.2e-13 Score=150.22 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=94.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|..+..|++....+|+|+|+|+.+++.++++......++.|.++|+.+.++++++||+|++.++++|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 46789999999999999999876334899999999999988766544446799999999999888889999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.++. .++++++++|||||++++.++..
T Consensus 345 ~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 345 IQDKP-------ALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cCCHH-------HHHHHHHHHcCCCeEEEEEEecc
Confidence 97654 89999999999999999998753
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=7.5e-13 Score=136.25 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.++++....+ .+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 5789999999999999888762 33589999999999999988775433 4799999999988764 599999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++++...+ ...++++++++|||||.+++.+.
T Consensus 134 ~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEEe
Confidence 999986433 56899999999999999999874
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=9.9e-13 Score=139.22 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~--~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..++..|...|+|+|.|+.|+.++.. +......++.+..+++.+++.. .+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 4678999999999999999988887789999999999876432 2222345788899999988764 589999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|+.++. .+|++++++|+|||.+++.++.
T Consensus 199 ~H~~dp~-------~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 199 YHRKSPL-------EHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hccCCHH-------HHHHHHHHhcCCCCEEEEEEEE
Confidence 9987654 8999999999999999998753
No 40
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=5e-13 Score=138.12 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=84.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.+++ .+++++++|+.+++ ++++||+|++..+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------RGVDARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------cCCcEEEcChhhCC-CCCCceEEEEehhhh
Confidence 467899999999999999998872 3489999999999987744 25889999998874 567999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++.+.. .++++++++|||||++++...
T Consensus 101 ~~~d~~-------~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WVPEHA-------DLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCCCHH-------HHHHHHHHhCCCCcEEEEEcC
Confidence 987543 899999999999999998754
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.43 E-value=8.7e-13 Score=136.00 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=118.5
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEE
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWR 121 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~--~~~~~~~~i~~~ 121 (659)
-||..++. ...+...+.. -.+.+|||||||+|..+..|+..|.+.|+|+|.+.-...+... +.......+.++
T Consensus 96 tEWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 96 TEWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred ccccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 35665542 2235555543 4688999999999999999999999899999999988776432 332222333444
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhc-chhhhhccCceEEE
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG-LLFPKFRFGWKMSV 200 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~-~l~~~~~~~w~~~~ 200 (659)
-.-+.++|. .+.||+|++.|+|+|..++- .+|.+++..|++||.+++-|+.-+.-.. .+...-+..=+-.+
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-------~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv 242 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPL-------DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV 242 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHH-------HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce
Confidence 467778876 68999999999999999886 8899999999999999998875332211 12222121112223
Q ss_pred eeeCCCCC-----CCCCCccEEEEEEecCCccccccccccc
Q 006149 201 HAIPQKSS-----SEPSLQTFMVVADKENSSVVLQVTSSFD 236 (659)
Q Consensus 201 ~~i~~~~~-----~~~~l~~f~~v~~k~~~~~~l~~~~~~~ 236 (659)
..+++... .+..+....++....+....+..++|++
T Consensus 243 ~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~ 283 (315)
T PF08003_consen 243 WFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMD 283 (315)
T ss_pred EEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcC
Confidence 34443322 2344555556555545555566666743
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.43 E-value=9e-13 Score=131.75 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=84.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|..+..|+.. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++.++++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhhh
Confidence 5679999999999999999886 4569999999999999876543 467889999988 888899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.... +.++++++.+++ ++++++.++-
T Consensus 118 l~p~~-----~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 118 INPDN-----LPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCHHH-----HHHHHHHHHhhc--CcEEEEEEee
Confidence 85332 679999999998 5677777653
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=6.4e-13 Score=126.28 Aligned_cols=109 Identities=31% Similarity=0.515 Sum_probs=89.3
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
...+..+... ..++.+|||+|||+|.++..+++.|+ +++|+|+++.+++. ..+.....+....+.+++
T Consensus 10 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 10 ADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhcccc
Confidence 3445555531 14678999999999999999988888 99999999988875 345566665556566789
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+||+|++..+++|+.++ ..+++++.++|||||++++.+...
T Consensus 78 ~fD~i~~~~~l~~~~d~-------~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDP-------EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEESSGGGSSHH-------HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred chhhHhhHHHHhhcccH-------HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 99999999999999854 499999999999999999999864
No 44
>PRK05785 hypothetical protein; Provisional
Probab=99.41 E-value=1.5e-12 Score=132.26 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++ ..++++|+.++|+++++||+|++..+++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 3679999999999999999887324899999999999977543 246899999999999999999999999988
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+.+ +++++++|+|||. +++++++
T Consensus 124 ~d~~-------~~l~e~~RvLkp~--~~ile~~ 147 (226)
T PRK05785 124 DNIE-------KVIAEFTRVSRKQ--VGFIAMG 147 (226)
T ss_pred CCHH-------HHHHHHHHHhcCc--eEEEEeC
Confidence 6644 8999999999994 3344444
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.40 E-value=1.8e-12 Score=131.42 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=92.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.+.+|||+|||+|.++..+++.+. .+++++|+++.++..+.++.. +++.++.+|+.+.++++++||+|++..++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347999999999999999988753 578999999999987766553 4789999999999988899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+.+.. .++.++.++|+|||.+++.++....+
T Consensus 111 ~~~~~-------~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 111 CDDLS-------QALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred ccCHH-------HHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 86544 89999999999999999998775543
No 46
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.39 E-value=2.1e-12 Score=137.83 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 5689999999999999888775 44589999999999998876542 35789999999999998899999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+.+ .+++++.++|+|||+++++...
T Consensus 191 ~~d~~-------~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 191 WPDPQ-------RGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCCHH-------HHHHHHHHhcCCCcEEEEEEec
Confidence 87654 8999999999999999887643
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.39 E-value=7.9e-12 Score=123.09 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=91.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++....+ ++++++++|+.+++. .++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 4789999999999999988864 34699999999999998877765544 469999999999876 679999998642
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~ 199 (659)
.+ ...+++.+.++|+|||++++.... +....+.... ..+|.+.
T Consensus 122 --~~-------~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --AS-------LSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVE 165 (187)
T ss_pred --cC-------HHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEe
Confidence 21 458999999999999999998754 3333333222 2378765
No 48
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.39 E-value=3.9e-12 Score=130.19 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++.... ..+++++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 5679999999999999989875 2358999999999999988776443 24689999999998765 589999999
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++++.+.+ ...++++++++|+|||.+++.+..
T Consensus 131 ~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeecc
Confidence 999875433 568999999999999999998753
No 49
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=5.7e-12 Score=127.58 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
++..+.+.+.. .++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++......++.+...|+.+.++
T Consensus 7 ~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 34445555554 577899999999999999998762 3689999999999998876633445789999999999888
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++||+|++..+++++.++. .+++++.++|+|||.+++.+..
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~-------~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA-------RALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHH-------HHHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999987654 8999999999999999988753
No 50
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.37 E-value=4.1e-12 Score=131.39 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=85.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++. +++.++.+|+.++. ++++||+|++..+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChh
Confidence 46789999999999999999876 3468999999999998776543 56899999998765 456999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++.+. ..+++++.++|||||++++..
T Consensus 105 ~~~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLPDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 98654 389999999999999998864
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.36 E-value=4.2e-12 Score=132.39 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=90.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.++++....+ .+++++++|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57889999999999988777665 43 479999999999999877654433 5789999999999988889999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++..+. ..+++++.++|||||++++.++.
T Consensus 156 ~~~~~d~-------~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDK-------ERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCH-------HHHHHHHHHHcCCCcEEEEEEee
Confidence 9876553 48999999999999999998764
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.36 E-value=6.4e-12 Score=130.87 Aligned_cols=115 Identities=22% Similarity=0.296 Sum_probs=89.2
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (659)
+..++.....+++.+|||||||-|.++..+++. |. +|+||.+|+...+.++++....+ .++++.++|..+++ .
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~ 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---G 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---C
Confidence 444455455689999999999999999999998 76 99999999999999988887666 56999999998875 3
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||.|++.+++.|+.... ...+++.+.++|+|||++++.+.+
T Consensus 127 ~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999999999986543 679999999999999999976654
No 53
>PRK06922 hypothetical protein; Provisional
Probab=99.36 E-value=4.4e-12 Score=143.20 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++....+.++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4689999999999999888875 3469999999999999988776544567888999999887 788999999999988
Q ss_pred cccCCc----c--cchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEP----E--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~----~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++.+. . .......+++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 865321 0 0112367999999999999999999874
No 54
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.35 E-value=3.3e-12 Score=123.53 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=92.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcE-EEEeecCCCC-CCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQ-FMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~-~~~~D~~~l~-~~~~sFDvVi~~g~ 143 (659)
.....||++|||||..-...-.....+||++|.++.|-+.+.+++++.. .++. |++++.++++ ++++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456789999999998876654444599999999999998888877765 4566 9999999997 89999999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|....++. +.|+++.|+|||||+++++++.
T Consensus 155 LCSve~~~-------k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPV-------KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHH-------HHHHHHHHhcCCCcEEEEEecc
Confidence 99887755 9999999999999999999976
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.35 E-value=1.2e-12 Score=131.33 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=87.4
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCCCCCCCCcccEEEec
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~----~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+.+|||+|||+|.+++.|++.|. +|+|||.++.+|+.+++...... . ++.+.+.|+.... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999999996 99999999999999988743222 1 3667778877763 559999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+++|+.++. .++..+.++|||||.+++.+...
T Consensus 166 evleHV~dp~-------~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 166 EVLEHVKDPQ-------EFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHhCHH-------HHHHHHHHHhCCCCceEeeehhh
Confidence 9999998876 89999999999999999999763
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.34 E-value=1.2e-11 Score=125.48 Aligned_cols=116 Identities=24% Similarity=0.375 Sum_probs=95.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.. .++.+|||+|||+|..+..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+.+++
T Consensus 42 ~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 42 KTIKWLGV---RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHhCC---CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34444443 457899999999999999998875 369999999999999887765432 35689999999998887
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.++||+|++..+++++.+. ..++.++.++|+|||++++.+...
T Consensus 119 ~~~~D~I~~~~~l~~~~~~-------~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI-------DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecccccCCCH-------HHHHHHHHHhccCCcEEEEEEecC
Confidence 7899999999988887654 489999999999999999987654
No 57
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.3e-11 Score=127.39 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=98.7
Q ss_pred hCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEE
Q 006149 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVI 138 (659)
Q Consensus 61 l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvV 138 (659)
+......|+.+|||||||-|.++..+|+.-..+|+|+++|+++.+.++++....+ .+++++..|..+++ +.||-|
T Consensus 65 ~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred HHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---ccccee
Confidence 3334458999999999999999999999832499999999999999998877665 36999999998875 459999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++.++++|+.... ...+|+.++++|+|||++++.+...++
T Consensus 142 vSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999997654 779999999999999999998887555
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.33 E-value=6.2e-12 Score=125.58 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=94.7
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec-CCCC--CCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ--FMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~-~~l~--~~~~sFDvVi~~g 142 (659)
++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.+.++..... +++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5689999999999999999876 34589999999999998887665443 6799999999 6665 7778999999865
Q ss_pred cccccCCccc-chHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEE
Q 006149 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (659)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~ 199 (659)
...+...... .......+++++.++|||||++++.+.....+ ..+...+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA-EYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHhCccccc
Confidence 4332211110 00013588999999999999999988654333 2333333 3456544
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.32 E-value=3.4e-11 Score=109.30 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-C
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l-~ 129 (659)
....+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++...... .++.++..|+... +
T Consensus 7 ~~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 7 VRALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 34444555543 45679999999999999999887 34689999999999998876654432 5788888887752 3
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...++||+|++.+.... ...+++++.++|+|||++++..+
T Consensus 84 ~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 33468999998664332 45899999999999999998754
No 60
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=8.5e-12 Score=123.75 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=108.0
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---CeEEEEcCCHH
Q 006149 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKV 102 (659)
Q Consensus 26 ~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---~~VtgvD~S~~ 102 (659)
..+.|||.+|.... ..| +.+..-+...+-+++... ..+..+||++|||.|.....+.+... -.|.++|+|+.
T Consensus 34 ~~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 34 EASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR 108 (264)
T ss_pred chhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH
Confidence 35679999999872 323 223222333344444431 12333899999999999988877621 37999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEeecCCC----CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 103 VISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 103 ~i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+..++.......++...+.|++.. +.+.+++|+|.+..+|.++.... ...++.+++++|||||.+++-+
T Consensus 109 Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 109 AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEee
Confidence 99876554333334566667777653 46679999999999999987655 7899999999999999999999
Q ss_pred cCCchh
Q 006149 179 LAESHV 184 (659)
Q Consensus 179 ~~~~~~ 184 (659)
++...+
T Consensus 184 Yg~~Dl 189 (264)
T KOG2361|consen 184 YGRYDL 189 (264)
T ss_pred cccchH
Confidence 986554
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=2.2e-11 Score=119.50 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..+ ..+|+++|.|+.+++.+++.....+ .+++++++|+.+++ ..++||+|++.+ ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 46899999999999999988663 3589999999999987766554433 57999999999874 357999999876 32
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+ ...+++.+.++|+|||++++...
T Consensus 120 ~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 S----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred C----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 34788999999999999998754
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.31 E-value=4.2e-11 Score=117.11 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=89.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......+++++++|+.+.. .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 557999999999999999998876 8999999999999887776555567889999987754 4589999999877655
Q ss_pred CCcc--------------cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 148 MEPE--------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 148 ~~~~--------------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.+.. .+......++.++.++|+|||+++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 4321 111236789999999999999999987653
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.30 E-value=1.3e-11 Score=138.84 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=94.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (659)
.+.+++.. .++.+|||+|||+|.++..|++.+ .+|+|+|+++.+++.+.+.. ...+++.++++|+.+ ++++++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 35555543 356799999999999999999885 48999999999998765433 234689999999974 567888
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+||+|++..+++++.+.+ ...+++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999987654 56999999999999999998764
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=1e-11 Score=129.02 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=85.1
Q ss_pred CCCeEEEECCCcch----HHHHHHHcC------CCeEEEEcCCHHHHHHHHHHhhc------------------------
Q 006149 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (659)
Q Consensus 68 ~~~~ILDiGCG~G~----~s~~La~~g------~~~VtgvD~S~~~i~~~~~~~~~------------------------ 113 (659)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.||+.+++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 344555431 13899999999999988753210
Q ss_pred ----CCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 114 ----DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 114 ----~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
-..++.|.++|+.+.+++.++||+|+|.++++++..+. ..+++++++++|+|||++++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEECc
Confidence 01368999999999887788999999999999986544 67999999999999999998653
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=3.3e-11 Score=120.57 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
+.....+.+.+.. .++.+|||+|||+|..+..+++. + .++|+++|+++.+++.++++....+ .+++++.+|+.
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3444556666653 57789999999999999888875 2 3589999999999998877665444 35899999998
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.....++||+|++.+++.++ .+++.++|+|||++++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 754456799999998876643 356889999999998754
No 66
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.29 E-value=4.3e-11 Score=120.17 Aligned_cols=114 Identities=25% Similarity=0.409 Sum_probs=95.0
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
.+...+.. .++.+|||+|||+|..+..+++... .+++++|+++.+++.+.++.. ...++.++.+|+.+.+++.+
T Consensus 30 ~~~~~~~~---~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 30 RAVKLIGV---FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHhcc---CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC
Confidence 34444443 4678999999999999999988754 489999999999998876654 44578999999999888778
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+||+|++..+++++.+. ..+++++.++|+|||++++.++.
T Consensus 106 ~~D~i~~~~~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTDI-------QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred cEEEEEEeeeeCCcccH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999888887653 48999999999999999998865
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.29 E-value=1.5e-11 Score=124.39 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=87.6
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.+|||+|||+|..+..+++.. ..+|+|+|+|+.+++.++++....+ .+++++..|+...+++ ++||+|++..++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999998863 3589999999999998887765433 5789999999777665 58999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+. ..+++++.++|+|||++++.++.
T Consensus 80 ~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 IKDK-------MDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCH-------HHHHHHHHHHcCCCCEEEEEEcc
Confidence 8653 49999999999999999998764
No 68
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.27 E-value=8.1e-13 Score=116.08 Aligned_cols=95 Identities=26% Similarity=0.343 Sum_probs=61.2
Q ss_pred EEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEecccccccC
Q 006149 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALM 148 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~ 148 (659)
||+|||+|.++..+.+. ...+++++|+|+.|++.++++..... ........+..+.. ...++||+|++.++++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44699999999999977766665543 33444444444331 1225999999999999993
Q ss_pred CcccchHHHHHHHHHHHhccccCeEE
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+ ...++++++++|+|||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 569999999999999986
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=4.1e-11 Score=116.34 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=92.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFMD 132 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~~ 132 (659)
..|.+++.. .+..+|||+|||+|.++..++..+. .+|+++|+++.+++.+++....... +++++..|+.+. .++
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 356666654 3578999999999999999999865 3699999999999988776655553 399999998774 447
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++||+|+++..++.-. +.+.....+++....++|+|||.++++......
T Consensus 97 ~~fD~Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~ 145 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLG 145 (170)
T ss_dssp TCEEEEEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred cceeEEEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeecCCC
Confidence 8999999998766433 223345789999999999999999776654333
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=6e-11 Score=119.38 Aligned_cols=114 Identities=13% Similarity=0.065 Sum_probs=90.2
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (659)
..+.+...+.+.+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 445666667776664 67899999999999999988876 3 2589999999999999887765544 5799999999
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.....+.++||+|++.+.... +...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 876656789999998765543 2456778999999988864
No 71
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.26 E-value=3.8e-11 Score=131.05 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++.. +..+++..+|..++ +++||+|++.+++++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 5788999999999999999988632489999999999998877663 34588888888765 478999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+.... ...+++++.++|||||++++.++..+
T Consensus 241 vg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 85433 56899999999999999999887543
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.26 E-value=2.2e-10 Score=112.77 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=88.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
.+..+..+...+.. .++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++.....+ .+++++++|+..
T Consensus 16 ~~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 34455556666654 467899999999999999998864 3589999999999998876554333 578999988753
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++ .++||+|++.+.... ...++..+.++|+|||++++....
T Consensus 93 -~~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred -hc-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEec
Confidence 33 368999998765432 347899999999999999887644
No 73
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.25 E-value=1.7e-11 Score=119.60 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=89.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|.|+|||+|..+..|+++ +...|+|+|-|+.||+.+.++ .++++|..+|+.+.. +...+|+++++.+|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----lp~~~f~~aDl~~w~-p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----LPDATFEEADLRTWK-PEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----CCCCceecccHhhcC-CCCccchhhhhhhhh
Confidence 56789999999999999999998 557999999999999877544 589999999999975 457899999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++-. .+|..+...|.|||.+.+-...
T Consensus 104 WlpdH~-------~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 104 WLPDHP-------ELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hccccH-------HHHHHHHHhhCCCceEEEECCC
Confidence 998755 8999999999999999887643
No 74
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=7.4e-11 Score=120.20 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++. ...++++.+++...++.++++||+|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~--~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP--RRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc--ccCCCeEEEEecccccccCCCccEEEEC
Confidence 35679999999999999888753 32 48999999999999876553 2356788888888887778899999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.+++|+.+++ ...+++++.++++ |.+++.++..+
T Consensus 137 ~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999997654 5689999999998 66777776644
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.25 E-value=7e-11 Score=119.05 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
+.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 63 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 3444556666654 6789999999999999999988732 469999999999999887765544 579999999987
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.....++||+|+..+.... +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 6444578999997765433 3456889999999998864
No 76
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=7.6e-11 Score=119.44 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=94.8
Q ss_pred HhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHH
Q 006149 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~f--ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~ 105 (659)
.+.|+..|.... -..+ .+...+......+..++......++.+|||+|||+|.++..|++.+. .|+++|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 467888876531 1111 01122333344455555421124578999999999999999998876 7999999999999
Q ss_pred HHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeE
Q 006149 106 DMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 106 ~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 173 (659)
.++++....+ .++.+..+|+. ..+++||+|++..+++++.++. ...+++++.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9987765443 37899999843 3467899999999998865443 66888888887754443
No 77
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.23 E-value=1e-10 Score=117.33 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|||+|||+|.++..+++.. ...|++||+++ | ...++++++++|+.+.+ +.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 25899999998 2 12357999999999863 6678999
Q ss_pred EEEecccccccCCcccch----HHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCCCCCCCC
Q 006149 137 VILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~----~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (659)
+|++..+.+....+..+. .....+|+++.++|+|||.|++..+....+. .++...+..|.. +..+...+.....
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~-~~l~~l~~~f~~-v~~~Kp~ssr~~s 197 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFD-EYLREIRSLFTK-VKVRKPDSSRARS 197 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHH-HHHHHHHhCceE-EEEECCccccccC
Confidence 999987766644321110 1136799999999999999999887644433 334444444433 3334444444444
Q ss_pred CccEEE
Q 006149 213 LQTFMV 218 (659)
Q Consensus 213 l~~f~~ 218 (659)
.+.|++
T Consensus 198 ~e~~~~ 203 (209)
T PRK11188 198 REVYIV 203 (209)
T ss_pred ceeEEE
Confidence 444544
No 78
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=7.7e-11 Score=118.98 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=99.9
Q ss_pred HhhHHHHHhhcCCCCcccccc-----chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYA-----EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~-----~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~ 102 (659)
...|+..|... ....|.. ....+...+.+++.. ...++.+|||+|||+|.++..++..+. +|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 45787777643 1122211 122334455566652 114578999999999999999998865 8999999999
Q ss_pred HHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 103 ~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+++.++++..... .++.+.++|+.+++ ++||+|++..+++++.... ...++.++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999888775544 37999999998875 7899999999988875433 568899999999877665543
No 79
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.22 E-value=1.4e-10 Score=116.53 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
|....||+..|..........-+...+.+...+..++.. .++.+|||+|||+|..+..++... .+|+++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 444556777776552111111122345555666666654 578899999999999999888775 4899999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++....+ .++.+.++|+.+...+.++||+|++...+.+ +...+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 98877765443 4689999998664323478999998765543 34567899999999998765
No 80
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=1.2e-10 Score=121.45 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=97.4
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHH-HHH-c-CCCeEEEEcCCHHHHHHHHHHhhc-C--C
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYD-A-GFHGITNVDFSKVVISDMLRRNVR-D--R 115 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~-La~-~-g~~~VtgvD~S~~~i~~~~~~~~~-~--~ 115 (659)
..|-+|..|..+...=...+......++.+|+|||||.|.++.. ++. . ..+.++|+|+++.+++.+++.... . .
T Consensus 97 ~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~ 176 (296)
T PLN03075 97 NLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS 176 (296)
T ss_pred hcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc
Confidence 34667777777766444444331123678999999998866543 332 3 335899999999999988877643 2 3
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++|.++|+.+.....+.||+|++. ++.++...+ ..++++++.+.|+|||.+++-+.
T Consensus 177 ~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 177 KRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CCcEEEECchhhcccccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEecc
Confidence 67999999998864335789999999 777664333 56999999999999999999873
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=99.21 E-value=1.9e-10 Score=116.58 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++.....+.++.++++|+.+. +++++||+|+++..+..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 46789999999999999999987766999999999999988766554445688899998763 45679999998754332
Q ss_pred cCC--------------cccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
... ..++......++.++.++|||||+++++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0111223567899999999999999987543
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.21 E-value=4e-10 Score=112.08 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=88.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (659)
.+++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.
T Consensus 26 ~~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 26 EEIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred HHHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 3455555555544 67889999999999999988764 3 3589999999999998877665543 57899999987
Q ss_pred CC-CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SM-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l-~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. +...+.||.|++.+... . ...+++.+.++|+|||++++....
T Consensus 103 ~~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hhHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeec
Confidence 64 32346899999854221 1 458899999999999999875543
No 83
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.19 E-value=1.2e-10 Score=121.63 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=80.2
Q ss_pred cchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----CC
Q 006149 514 LASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQ 589 (659)
Q Consensus 514 L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----~~ 589 (659)
..+.||++|++ +.++. +++|++||+||+|+|++++.+.++.+..++++|||||.|+++|++||.. .+
T Consensus 54 ~e~~y~e~l~~-~~l~~--------~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~ 124 (270)
T TIGR00417 54 DEFIYHEMIAH-VPLFT--------HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD 124 (270)
T ss_pred hHHHHHHHhhh-hHhhc--------CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc
Confidence 34789998876 44443 2677899999999999999998887777999999999999999999843 23
Q ss_pred CCCee------------------EE-----------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 590 DKSLK------------------VF-----------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 590 d~rl~------------------vf-----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++|++ +. .+|++.+|++.++++| +++|+++.|.
T Consensus 125 ~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L---~pgG~lv~~~ 186 (270)
T TIGR00417 125 DPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKAL---NEDGIFVAQS 186 (270)
T ss_pred CCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHh---CCCcEEEEcC
Confidence 45542 21 2467899999999999 9999999875
No 84
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.19 E-value=2e-10 Score=121.88 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEeec
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~------~~~i~~~~~D~ 125 (659)
.....+.+++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++.... ..++.|.++|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3444455665431112567999999999999999999886 8999999999999988776543 24678899998
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.++ +++||+|++..++.|+.+.. ...+++.+.+ +.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 664 47899999999998876543 4466666665 45555544
No 85
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=7.2e-11 Score=106.60 Aligned_cols=111 Identities=24% Similarity=0.342 Sum_probs=86.8
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCcccEEEecccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l 144 (659)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.++....... .+++++++|+.+.. +++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 36899999999999999998885699999999999998876665543 57999999998875 778999999998776
Q ss_pred cccCCc-ccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~-~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... .........+++++.++|+|||.++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 643221 11222467899999999999999998864
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.17 E-value=4.2e-10 Score=120.80 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=95.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (659)
.+...+..+... .++.+|||+|||+|.++..++..+. .++|+|+++.|+..+++.....+ .++.+.++|+.++++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344445555443 5678999999999999988877765 89999999999998766654433 458899999999988
Q ss_pred CCCcccEEEecccccccCC--cccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 131 MDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
++++||+|++...+..... ..........+++++.++|+|||+++++......
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 8889999998744322111 0111123679999999999999999998876433
No 87
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.16 E-value=3.6e-10 Score=122.50 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=91.8
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (659)
...+++.+.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++...... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3456677754 345699999999999999998874 4699999999999998876654433 3678888888653
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+++++||+|+++..++..... ......+++..++++|+|||.++++..
T Consensus 294 -~~~~~fDlIlsNPPfh~~~~~--~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 -VEPFRFNAVLCNPPFHQQHAL--TDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -CCCCCEEEEEECcCcccCccC--CHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 345689999999887753211 112367899999999999999999863
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.16 E-value=1.2e-10 Score=115.53 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvVi~~g 142 (659)
...+|||||||+|.++..++.. +..+|+|+|+++.+++.+.++....+ .+++++++|+.+++ ++++++|.|+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999887 34689999999999998877654433 58999999998753 4567999999765
Q ss_pred cccccCCcccch-HHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 143 GLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 143 ~l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
...+........ -....+++++.++|||||.+++.+....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 433321100000 0025789999999999999999886643
No 89
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.15 E-value=3.2e-10 Score=115.43 Aligned_cols=106 Identities=23% Similarity=0.317 Sum_probs=89.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l~ 145 (659)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.......+.+...|+.+.+ ..+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988875 8999999999999887766544456788888887764 3457999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.+.. .+++.+.++|+|||.+++..+.
T Consensus 126 ~~~~~~-------~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDPA-------SFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCHH-------HHHHHHHHHcCCCcEEEEEecC
Confidence 886644 8899999999999999988764
No 90
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=4.1e-10 Score=114.22 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=85.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D 124 (659)
|......+...++.-+......++.+|||+|||+|.++..+++. +.+.|+++|+++.|++.+.+++. ..+++.++.+|
T Consensus 50 ~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~-~~~nv~~i~~D 128 (226)
T PRK04266 50 WNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE-ERKNIIPILAD 128 (226)
T ss_pred ECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-hcCCcEEEECC
Confidence 44433444444444221123367889999999999999999886 33589999999999998766653 34789999999
Q ss_pred cCCC----CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 125 MTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 125 ~~~l----~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
+.+. +++ ++||+|++... ++. ....+++++.++|||||++++.
T Consensus 129 ~~~~~~~~~l~-~~~D~i~~d~~-----~p~----~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 129 ARKPERYAHVV-EKVDVIYQDVA-----QPN----QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCcchhhhcc-ccCCEEEECCC-----Chh----HHHHHHHHHHHhcCCCcEEEEE
Confidence 8752 223 56999985322 221 1346789999999999999994
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=5.8e-10 Score=119.93 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=103.9
Q ss_pred CCCHhhHHHHHhhcC-----CCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEc
Q 006149 25 FTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVD 98 (659)
Q Consensus 25 f~~~eyWd~~y~~~~-----~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD 98 (659)
|...+||.. |.... ....|.|- ....-...+...+.. ....+|||+|||+|.++..+++.. ..+|+++|
T Consensus 153 ~~~~~~~~~-y~~~~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vD 227 (342)
T PRK09489 153 FDADKFWKE-YQVDGLTVKTLPGVFSRD-GLDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSD 227 (342)
T ss_pred Cccccccee-eecCCEEEEeCCCCCCCC-CCCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEE
Confidence 556667764 33211 12233332 222333456666653 345689999999999999998874 35899999
Q ss_pred CCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 99 FSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 99 ~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.+++.+++..........++..|+.+. ..++||+|+++..+|..... .......++.++.++|+|||.++++.
T Consensus 228 is~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 228 VSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 999999998877766555567788887653 25789999999888764322 12346799999999999999998887
Q ss_pred cC
Q 006149 179 LA 180 (659)
Q Consensus 179 ~~ 180 (659)
..
T Consensus 304 n~ 305 (342)
T PRK09489 304 NA 305 (342)
T ss_pred eC
Confidence 54
No 92
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=6.1e-10 Score=117.27 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++...... ..+.+...+.. +..+++||+|+++...+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCHH
Confidence 578999999999999999988887799999999999998877665443 24555665533 33467899999875433
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
. ...++.++.++|||||+++++.+..
T Consensus 237 ~----------l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 237 V----------IKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred H----------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 2 4588999999999999999988753
No 93
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.13 E-value=5.3e-10 Score=118.71 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+++ .+|+|+...+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 466899999999999999998873 358999997 788888776655443 5799999999876665 3799999999
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+++..+.. ..++++++++.|+|||++++.++.
T Consensus 225 lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 225 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 98765433 568999999999999999999863
No 94
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.12 E-value=5e-10 Score=118.69 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCC-CCCCC----cccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSM-QFMDE----TFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l-~~~~~----sFDvV 138 (659)
++.+|||+|||+|..+..|++.. ..+|+++|+|+.|++.+.++.....++ +.++++|+.+. +++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 46799999999999999998873 248999999999999998877654444 66789999873 44332 23344
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+...+++++...+ ...+|++++++|+|||.|++....
T Consensus 143 ~~gs~~~~~~~~e-----~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTPEE-----AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCHHH-----HHHHHHHHHHhcCCCCEEEEeccC
Confidence 4555677765433 679999999999999999886543
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=3.7e-10 Score=114.01 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=89.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCC-CCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~ 145 (659)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++...... ++++.+.|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 468999999999999999988776 799999999999988776654444 689999998877544 37899999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.++. .+++++.++|+|||.+++.+..
T Consensus 124 ~~~~~~-------~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDPQ-------AFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCHH-------HHHHHHHHhcCCCcEEEEEecC
Confidence 887654 8999999999999999987754
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.09 E-value=3.7e-09 Score=104.92 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (659)
.......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 25 ~~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 25 KREVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 34555566777754 56789999999999999998865 33589999999999998876654433 578999999865
Q ss_pred -CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 128 -MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 128 -l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++.....+|.|+..+. .. ...+++++.++|+|||++++......
T Consensus 102 ~~~~~~~~~d~v~~~~~------~~-----~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 102 CLAQLAPAPDRVCIEGG------RP-----IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred HHhhCCCCCCEEEEECC------cC-----HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2222234676654221 11 45899999999999999999987643
No 97
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=6.3e-10 Score=114.15 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=83.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+.+|||+|||+|.++..++.. +..+++++|+++.+++.+++.....+ .++.++++|+.+ ++++++||+|+++..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4569999999999999999886 33589999999999998877665433 469999999977 45678999999865433
Q ss_pred ccCCc-------------------ccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEP-------------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~-------------------~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..... .++......++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21110 0011124578999999999999998865
No 98
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.09 E-value=2e-09 Score=106.12 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|||+|||+|.++..+++.. ..+|+++|+++.+ ..+++.++++|+.+.+ +++++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888763 3579999999843 2357889999987743 4567899
Q ss_pred EEEecccccccCC--cc--cchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceEEEeeeCCCCCCCC
Q 006149 137 VILDKGGLDALME--PE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSVHAIPQKSSSEP 211 (659)
Q Consensus 137 vVi~~g~l~~l~~--~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~~~~~i~~~~~~~~ 211 (659)
+|++.++.+.... .. ......+.++..+.++|+|||++++..+....+. .++..+.. .|...+.. ...+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~ 177 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID-EYLNELRKLFEKVKVTK--PQASRKR 177 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHH-HHHHHHHhhhceEEEeC--CCCCCcc
Confidence 9998765321110 00 0011246899999999999999999765433322 23333322 33444332 2223334
Q ss_pred CCccEEE
Q 006149 212 SLQTFMV 218 (659)
Q Consensus 212 ~l~~f~~ 218 (659)
.-+.|++
T Consensus 178 ~~~~~~~ 184 (188)
T TIGR00438 178 SAEVYIV 184 (188)
T ss_pred cceEEEE
Confidence 4455654
No 99
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.08 E-value=3.1e-10 Score=110.35 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=82.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDE 133 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~ 133 (659)
.+.++++ |+.+|||+|||.|.+...|.+....+..|+|+++..+..+.++ .+.++++|+.+- .|+++
T Consensus 6 ~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 4667774 6899999999999999999886445899999999888766443 478999999874 58999
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+||.|+...+|.++..++ .+|+++.|+ |...+++-
T Consensus 75 sFD~VIlsqtLQ~~~~P~-------~vL~EmlRV---gr~~IVsF 109 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPD-------EVLEEMLRV---GRRAIVSF 109 (193)
T ss_pred CccEEehHhHHHhHhHHH-------HHHHHHHHh---cCeEEEEe
Confidence 999999999999998766 889988777 43444433
No 100
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=8.6e-10 Score=114.94 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++... ....++.++++|+.+. +++++||+|+++...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 466799999999999999998874 4689999999999998877654 2335799999998663 345789999986432
Q ss_pred ccc-------------------CCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 145 DAL-------------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 145 ~~l-------------------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
... ....++.....+++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 211 0111122346789999999999999998854
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=1.5e-09 Score=114.11 Aligned_cols=111 Identities=19% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ ++++++||+|+++...
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999999999873 3589999999999998877665444 469999999865 3455689999986322
Q ss_pred c------ccC------------CcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 D------ALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~------~l~------------~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. .+. ..+++......++..+.++|+|||++++-..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 110 0112223467899999999999999987654
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=1e-09 Score=118.55 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDvVi~~g 142 (659)
..+..+||||||+|..+..+|.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ .++++++|.|+...
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 45679999999999999999987 34689999999999999987775544 6899999999764 57789999999765
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
...+..... -+-....++.++.|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 433321110 00013689999999999999999998765543
No 103
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.06 E-value=1e-09 Score=107.51 Aligned_cols=125 Identities=22% Similarity=0.335 Sum_probs=97.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-CCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-l~~ 130 (659)
+....-++++..+.+ ...-|||||||+|..+..|.+.|. ..+|+|+|+.|++.+.++..+ -.++.+||-. +||
T Consensus 35 em~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glpf 108 (270)
T KOG1541|consen 35 EMAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCCC
Confidence 344445555554222 467999999999999999999995 899999999999988764322 3578888875 599
Q ss_pred CCCcccEEEecccccccCCcc----cchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 131 MDETFDVILDKGGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~----~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
..++||.+|+..++.++.+.. .....+..++..++.+|++|++.++--+...
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 999999999999888776433 2234478889999999999999999887643
No 104
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=3.6e-09 Score=103.45 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC-C--cEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~-~--i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++....... + +.++++|+.+. +.+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 467799999999999999999886 5999999999999988766544332 2 88999998773 45568999998765
Q ss_pred ccccCC--------------cccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+..... ...+......+++++.++|+|||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 433110 0011223567899999999999998877643
No 105
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.05 E-value=6.8e-10 Score=118.58 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=89.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-------CC----CCcEEEEeecCCCC----CCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ----FMD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-------~~----~~i~~~~~D~~~l~----~~~ 132 (659)
++.+|||+|||.|.....+...+...++|+|+++..|+++++|... .. -...++++|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999999989888888999999999999999999822 11 13567788876542 333
Q ss_pred --CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcch
Q 006149 133 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 188 (659)
Q Consensus 133 --~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l 188 (659)
..||+|-|..++|+....+ ..++.+|.++...|+|||+|+.+++....+...+
T Consensus 142 ~~~~FDvVScQFalHY~Fese---~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l 196 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESE---EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRL 196 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCH
T ss_pred cCCCcceeehHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHH
Confidence 4999999999999987655 3488999999999999999999998766554433
No 106
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.4e-09 Score=105.69 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=105.2
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHH
Q 006149 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (659)
Q Consensus 25 f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i 104 (659)
|-...|-...|....-......+...+.....+.+++.. .++.+|||||||+|..+..|++..- +|+.+|..+...
T Consensus 32 FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~ 107 (209)
T COG2518 32 FVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELA 107 (209)
T ss_pred ccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHH
Confidence 444444444455442222233344456667777788876 7899999999999999999999854 999999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++++....+ .++.++++|...---+.+.||.|+..++...++ ..+.+.|++||++++-.-
T Consensus 108 ~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 108 EQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCC-------------HHHHHhcccCCEEEEEEc
Confidence 99988776655 589999999887533458999999988877653 457789999999998775
No 107
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.03 E-value=1.5e-09 Score=111.93 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++......- .+.+..+ +.+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCcH
Confidence 36789999999999999988888876799999999999988776644332 1222111 2279999986432
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+. ...++.++.++|||||++++.....
T Consensus 190 ~~----------~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 NP----------LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HH----------HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 21 4588999999999999999987653
No 108
>PTZ00146 fibrillarin; Provisional
Probab=99.03 E-value=2.3e-09 Score=111.61 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=88.5
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|..-...|...++.-+......++.+|||+|||+|.++..+++. + ...|+++|+++.+++.+.+.+. ..+++.++..
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~ 188 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIE 188 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEEC
Confidence 44444445544544444444578899999999999999999987 3 3589999999988877766543 3478999999
Q ss_pred ecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 124 DMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 124 D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
|+... ....++||+|++... .. + ....++.++.++|||||+|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva---~p--d----q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA---QP--D----QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC---Cc--c----hHHHHHHHHHHhccCCCEEEEE
Confidence 98752 223468999987653 11 1 1446677899999999999994
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.03 E-value=1.5e-09 Score=118.12 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC-CCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+.+++++++|+.+..++ .++||+|+++...-
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998875 446899999999999988777655556899999999765332 46899999976431
Q ss_pred c------------------cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 A------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. +...+++....+.++..+.+.|+|||.+++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1 11112233347788999999999999987644
No 110
>PRK03612 spermidine synthase; Provisional
Probab=99.03 E-value=8.9e-10 Score=125.08 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-------
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 588 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------- 588 (659)
..||+++++ +++.. +++|++||+||+|+|.+++.+.++.+..++++|||||+|+++|+++|.++
T Consensus 281 ~~y~e~l~~-~~l~~--------~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALVH-PAMAA--------SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHHH-HHHhh--------CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 569998876 34433 36789999999999999999888744479999999999999999965442
Q ss_pred CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+|+++. .++++.+|++.++++| +|+|+++.|.
T Consensus 352 ~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L---~pgG~lv~~~ 415 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRL---APDGLLVVQS 415 (521)
T ss_pred CCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhc---CCCeEEEEec
Confidence 46777332 2588999999999999 9999999976
No 111
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.02 E-value=1.7e-09 Score=107.25 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-C-CCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M-QFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-l-~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..+++.....++|+|+|+.+++.+.+ .+++++++|+.+ + ++++++||+|++.++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 467999999999999999987644578999999999886643 247889999876 4 46778999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhcccc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
++.++. .+++++.|.+++
T Consensus 87 ~~~d~~-------~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPE-------EILDEMLRVGRH 104 (194)
T ss_pred cCcCHH-------HHHHHHHHhCCe
Confidence 987654 788888887653
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=3.2e-09 Score=112.72 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=82.4
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc-
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD- 145 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~- 145 (659)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999998873 4589999999999998877665443 4699999998652 3456899999873211
Q ss_pred -----c------------cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 -----A------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 -----~------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
. +...+++......+++.+.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 111112233467899999999999999998553
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=2e-09 Score=92.57 Aligned_cols=101 Identities=29% Similarity=0.351 Sum_probs=82.1
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCC-CCCcccEEEecccccccC
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLDALM 148 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~~l~ 148 (659)
+|+|+|||+|..+..++..+..+++++|.++.+++.+.+... ....++++...|+.+... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988545699999999999987763332 233678999999988754 56789999999998874
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
.. ....+++.+.+.|+|||.+++.
T Consensus 80 ~~-----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE-----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh-----HHHHHHHHHHHHcCCCCEEEEE
Confidence 11 2569999999999999999876
No 114
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.00 E-value=2.4e-09 Score=108.81 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=101.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CC
Q 006149 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FM 131 (659)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~ 131 (659)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.+.+....+. .+++++++|+.++. ..
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455543 34789999999999999999998 55799999999999997766544332 68999999999873 44
Q ss_pred CCcccEEEecccccccCCc--ccch---------HHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceE
Q 006149 132 DETFDVILDKGGLDALMEP--ELGH---------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 198 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~--~~~~---------~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~ 198 (659)
..+||+|+|+..++..... ++.. ...+..++...++||+||++.++... .....+....+. .|..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--ERLAEIIELLKSYNLEP 189 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--HHHHHHHHHHHhcCCCc
Confidence 4579999999888765544 1111 11889999999999999999998753 333444454433 4433
No 115
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=3.1e-09 Score=111.70 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=82.5
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc-
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD- 145 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~- 145 (659)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ +++..+||+|+++...-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 699999999999999999873 3589999999999998877655443 349999999876 44445899999863211
Q ss_pred -----------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 -----------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 -----------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++...+++......++..+.++|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1111222334578999999999999999887554
No 116
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.99 E-value=3.1e-09 Score=111.56 Aligned_cols=120 Identities=17% Similarity=0.299 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++...++.|..+|+|+|+++.+++.+++....++-.-.+...... ....++||+|+++=..+-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~v 237 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILADV 237 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHHH
Confidence 367899999999999999999999989999999999999988777666532233332222 233589999998755443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~ 199 (659)
+..++..+.++|+|||+++++-+.... ...+...+..+|.+.
T Consensus 238 ----------L~~l~~~~~~~l~~~G~lIlSGIl~~~-~~~v~~a~~~g~~~~ 279 (295)
T PF06325_consen 238 ----------LLELAPDIASLLKPGGYLILSGILEEQ-EDEVIEAYKQGFELV 279 (295)
T ss_dssp ----------HHHHHHHCHHHEEEEEEEEEEEEEGGG-HHHHHHHHHTTEEEE
T ss_pred ----------HHHHHHHHHHhhCCCCEEEEccccHHH-HHHHHHHHHCCCEEE
Confidence 457889999999999999998876433 234444444455553
No 117
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.99 E-value=1.1e-09 Score=112.66 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=97.2
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCCC------CCCCC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTSM------QFMDE 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~----~i~~~~~D~~~l------~~~~~ 133 (659)
++.+.++++|||.|.....+-+.|...++|+||++..|.++++|+..-. . .+.|+++|.+.. ++.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3688999999999999998888898899999999999999998876422 1 367899998753 44556
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchh
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF 189 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~ 189 (659)
+||+|-|..++|+....+. .+..+|.++.+.|+|||+||-..+....+...+-
T Consensus 196 ~fDivScQF~~HYaFetee---~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr 248 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEE---SARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR 248 (389)
T ss_pred CcceeeeeeeEeeeeccHH---HHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence 6999999999998765442 3889999999999999999988876555544443
No 118
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.96 E-value=2.4e-08 Score=96.73 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTS 127 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~ 127 (659)
-.+++...+..|.. .++++++|||||+|..+.+++..+ ..+|+++|-++.+++...+...+ ..+++..+.+|+-+
T Consensus 19 K~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 19 KEEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 45666666666654 789999999999999999998554 37999999999999866444333 23889999999877
Q ss_pred CCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 128 l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.--...+||.|+..|. -. .+.+++.+...|||||+++..-...+.
T Consensus 96 ~L~~~~~~daiFIGGg-~~----------i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 96 ALPDLPSPDAIFIGGG-GN----------IEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred hhcCCCCCCEEEECCC-CC----------HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 5212227999999887 32 458999999999999999987765444
No 119
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.9e-09 Score=108.65 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=89.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++...++.|...|+|+|+.+.+++.+++....++-. +.....+....+ ..++||+|+++=..+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA~ 240 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILAE 240 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhHH
Confidence 68999999999999999999999989999999999999888766555422 223333333332 236999999874222
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEee
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (659)
- ...+...+.+.|||||+++++-..... .+...+.+ ..+|.+.-..
T Consensus 241 v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 241 V----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred H----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 2 568999999999999999999876444 33344444 4466554443
No 120
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.95 E-value=1.5e-09 Score=108.71 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=88.9
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~ 122 (659)
.....+.+...+++++.. +++.+|||||||+|..+..|+.. |. ..|++||+.+...+.++++....+ .++.+++
T Consensus 53 ~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 53 QTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp EEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred eechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 344556777778888875 78999999999999999999886 43 469999999999999988776544 5899999
Q ss_pred eecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 123 ~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|...---+.+.||.|+..++...+ -..|.+.|++||++++.--
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeeccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 9987754345789999998877643 3568889999999998664
No 121
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.95 E-value=1.9e-09 Score=103.61 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=70.5
Q ss_pred EEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 95 tgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
+|+|+|+.|++.++++.... ..+++|+++|+.++|+++++||+|++..+++++.+. .+++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~-------~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR-------LRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH-------HHHHHHHHHHcCc
Confidence 58999999999887665321 247999999999999999999999999999988654 4999999999999
Q ss_pred CeEEEEEEcCCch
Q 006149 171 GGKFVCLTLAESH 183 (659)
Q Consensus 171 GG~lvi~~~~~~~ 183 (659)
||++++.++..+.
T Consensus 74 GG~l~i~d~~~~~ 86 (160)
T PLN02232 74 GSRVSILDFNKSN 86 (160)
T ss_pred CeEEEEEECCCCC
Confidence 9999999987543
No 122
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=107.81 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=76.1
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
..++|+|||||..+.-++.+ +.+|+|+|+|+.||+.+.+....... ..+....++.++--.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999777777777 67999999999999866544322221 1222333344443337899999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCe-EEEEEEcCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 181 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG-~lvi~~~~~ 181 (659)
. .++++++++|+||+.| .+.+..+.+
T Consensus 114 d--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 114 D--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred c--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 4 4599999999998765 777777764
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.1e-08 Score=106.05 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~ 130 (659)
=...|++.+.. ....+|||+|||.|.++..|++.. ..+++.+|++..+++.+++....+.... .+...|+.+ +.
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v 221 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PV 221 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cc
Confidence 34567777765 456699999999999999999884 5799999999999998877766565443 566666655 44
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~ 192 (659)
.+ +||.|+++..+|.-..- ......+++....+.|++||.+.++..........+-+.|
T Consensus 222 ~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred cc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 43 99999999999853322 2233669999999999999999988875444333333333
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=9.1e-09 Score=109.57 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~ 126 (659)
.+.+...+.+.+.. .++.+|||+|||+|.++..+++.. .+.|+++|+++.+++.++++....+ .++.++++|..
T Consensus 65 ~p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 34555556666554 567899999999999999998863 2469999999999998877665433 57899999987
Q ss_pred CCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.....++||+|++...+.. ....+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 76555578999998654443 3455788999999988865
No 125
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=1.6e-08 Score=112.45 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=89.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMD 132 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~ 132 (659)
.+...+.. .++.+|||+|||+|..+..+++.+. ..|+++|+++.+++.++++....+.+++++++|+.+++ ++.
T Consensus 235 ~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAP---QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCC---CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 34445543 5788999999999999999988743 58999999999999998877665556889999998764 345
Q ss_pred CcccEEEeccccccc------------CCcccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDAL------------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l------------~~~~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++||.|++....... ..+++- .....+++..+.++|||||+++.++.+
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 789999954322111 010000 012458999999999999999988864
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.88 E-value=2.3e-08 Score=96.86 Aligned_cols=102 Identities=12% Similarity=0.122 Sum_probs=75.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++.. ..++++++++|+.++++++.+||.|+++-.++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~-~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFA-AADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhc-cCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 467899999999999999999885 489999999999998876653 346899999999999887778999998755542
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+ .+.++++.. .+.++|.+++-.
T Consensus 90 -~~~-----~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 -STP-----ILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred -HHH-----HHHHHHhcC--CCcceEEEEEEH
Confidence 211 133333321 234677776543
No 127
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=2e-08 Score=103.68 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=80.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C-CCCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q-FMDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~-~~~~sFDvVi~~g~l~ 145 (659)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+ ++++++|+.+. + ...++||+|+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999999875 33489999999999998766654332 58899998763 2 1135799999875432
Q ss_pred c------c-------------CCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 A------L-------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~------l-------------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. + ....++......++..+.++|+|||++++....
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 1 111122233678899999999999999987654
No 128
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=1.6e-08 Score=106.20 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDvVi 139 (659)
.+.+||++|||+|..+..+++. +..+|++||+++.+++.+++.... ..++++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567999999999999988776532 247899999998774 33467899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..+-.... .. .-....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~-~~--~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGP-AE--GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCc-hh--hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 754322211 10 0013578899999999999998754
No 129
>PRK04457 spermidine synthase; Provisional
Probab=98.85 E-value=2.9e-08 Score=103.08 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=82.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCC-CCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM-QFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l-~~~~~sFDvVi~~g~ 143 (659)
++.+|||||||+|.++..++.. +..+|+++|+++.+++.+++..... .++++++++|+.+. .-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4579999999999999988876 4468999999999999887765433 36899999998764 22236899999642
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++....+. .-....+++.+.+.|+|||++++..+..+
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 22111010 00135899999999999999999665543
No 130
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=2e-08 Score=111.79 Aligned_cols=114 Identities=23% Similarity=0.218 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC----CCCCcccEEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----FMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~----~~~~sFDvVi 139 (659)
.++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+ .++.++++|+.+++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57889999999999999999876 23589999999999998877765544 56899999998875 4457899999
Q ss_pred ec------ccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~------g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. |++..-++. ++- .....++|.++.++|||||+++.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 53 333322211 000 011468899999999999999988765
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.84 E-value=2.8e-08 Score=110.42 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=86.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi~~g 142 (659)
.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.++++....+ .++.+.++|+.+++ +.+++||.|++..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57889999999999999998876 24689999999999999987776544 46889999998875 4467899999633
Q ss_pred cccccCC----ccc-------c----hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALME----PEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~----~~~-------~----~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
....... ++. . .....++|.++.++|||||+++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2221111 110 0 012467899999999999999999876
No 132
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.84 E-value=2.5e-08 Score=110.78 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=87.5
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeecCCCCC--
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQF-- 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~--~~~D~~~l~~-- 130 (659)
.+...+.. .++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+-.+.+ .++|....++
T Consensus 229 ~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 44455543 57889999999999999999876 4458999999999999887777554433434 6667665543
Q ss_pred CCCcccEEEec------ccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~------g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.++||.|++. |++...++. .+- .....++|.++.++|||||+++.++.+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 46789999953 344432221 000 012468999999999999999999876
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=3.5e-08 Score=102.68 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .++.+++.|+..++...++||+|+....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 57889999999999999998875 2 3589999999999998887765544 5789999998877655567999995322
Q ss_pred cccc----CCccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDAL----MEPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l----~~~~~----~~-------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.... .+++. .. ....++|..+.++|||||+++.++.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111 01110 00 12456999999999999999998876
No 134
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=4e-08 Score=109.79 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=84.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEec--
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDK-- 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~-- 141 (659)
.++.+|||+|||+|..+..+++. +.+.|+++|+|+.+++.++++....+ .+++++++|+.+++ ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 56789999999999999888874 23589999999999998887775544 46899999998875 45789999952
Q ss_pred ----ccccccC------Ccccc---hHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 ----GGLDALM------EPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 ----g~l~~l~------~~~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
|++..-+ +++.- .....++|.++.++|||||+++..+.+-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2222100 10000 0113478999999999999999999763
No 135
>PHA03411 putative methyltransferase; Provisional
Probab=98.81 E-value=3.1e-08 Score=102.12 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=85.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+|||+|||+|.++..++... ..+|+++|+++.+++.++++ .+++.++++|+.+... +.+||+|+++..+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL----LPEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CcCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 45799999999999998887752 35899999999999877553 2578999999998753 468999999998887
Q ss_pred cCCcccch-----------HH--HHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 147 LMEPELGH-----------KL--GNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 147 l~~~~~~~-----------~~--~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
....+... .. +.+.+.....+|+|+|.++++-.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 54332111 00 367889999999999988777544444
No 136
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=3.2e-08 Score=112.00 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.....+ .++.++++|+.+ .++.++||+|+++....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 468999999999999988865 44689999999999998877654443 468999999865 33456899999864322
Q ss_pred c-------------------cCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 A-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~-------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. +...+++......+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 11122233347788999999999999988743
No 137
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=9e-08 Score=104.93 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=93.9
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcE
Q 006149 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMR 119 (659)
Q Consensus 43 ~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~ 119 (659)
...||-+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++....++ .+++
T Consensus 201 ktG~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~ 274 (396)
T PRK15128 201 KTGYYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAE 274 (396)
T ss_pred ccCcChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEE
Confidence 3346666555555555553 467999999999999988776676799999999999998877665544 3689
Q ss_pred EEEeecCCCC--C--CCCcccEEEecccccccCCcc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 120 WRVMDMTSMQ--F--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 120 ~~~~D~~~l~--~--~~~sFDvVi~~g~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++++|+.+.- + ..++||+|++......-.... ........++....++|+|||.+++.+.+
T Consensus 275 ~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 275 FVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998751 2 246899999765432211000 00112567777889999999999987765
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.75 E-value=1.7e-07 Score=110.21 Aligned_cols=130 Identities=17% Similarity=0.075 Sum_probs=93.9
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~ 121 (659)
.+|-+....+..+.++. ++.+|||+|||+|.++..++..|..+|++||+|+.+++.+++....++ .+++++
T Consensus 521 G~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i 594 (702)
T PRK11783 521 GLFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLI 594 (702)
T ss_pred eECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEE
Confidence 35555555565665554 357999999999999999999887789999999999998877665443 368999
Q ss_pred EeecCCCC-CCCCcccEEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 122 VMDMTSMQ-FMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 122 ~~D~~~l~-~~~~sFDvVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+.+.- -..++||+|++......-... .........++..+.++|+|||.+++.+..
T Consensus 595 ~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 595 QADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99987631 114689999975432211000 011123668899999999999999887654
No 139
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=9.1e-08 Score=106.91 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=87.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (659)
.+...+.. .++.+|||+|||+|..+..+++. +.+.|+++|+++.+++.++++....+ .++.++++|+.++. +
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 34445543 56789999999999999999876 34689999999999998877665444 46899999998763 3
Q ss_pred CCCcccEEEecccccccC----Cccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 131 MDETFDVILDKGGLDALM----EPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~----~~~~----~~-------~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ ++||+|++........ .++. .+ .....++..+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 7899999754221110 0000 00 11356899999999999999987754
No 140
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.3e-07 Score=99.13 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=85.1
Q ss_pred eEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc--
Q 006149 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA-- 146 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~-- 146 (659)
+|||+|||+|.++..++.... .+|+|+|+|+.+++.+++.+...+ .++.+++.|..+- .. ++||+|+++...=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cC-CceeEEEeCCCCCCCc
Confidence 799999999999999998853 599999999999998876665555 5566777776663 33 48999998753211
Q ss_pred ----------------cCCcccchHHHHHHHHHHHhccccCeEEEEEEc-CCchhhcchhh
Q 006149 147 ----------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 190 (659)
Q Consensus 147 ----------------l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~-~~~~~~~~l~~ 190 (659)
+....++......++.++.+.|+|||.+++-.- .+......++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 111123334589999999999999999888664 44433333333
No 141
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.72 E-value=3.2e-08 Score=98.23 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
...+.||.|||-|+.|..+.-.-+..|..||..+.+++.+++......++ ..+.+..+.++..+.++||+||+.+++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 46799999999999998886666789999999999999998766543334 57889999988656689999999999999
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.+.+ +-++|+++...|+|+|.+++-+.
T Consensus 135 LTD~d-----lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDED-----LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhCcCCcEEEEEec
Confidence 98876 88999999999999999998553
No 142
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=1.2e-07 Score=96.89 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFD 136 (659)
.++.+|||+|||+|..+..++.. +.++|+++|+++.+++.+++.....+ .+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35689999999999998888765 34699999999999998887765554 5799999999764 1 1246899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.... ......++..+.++|+|||.+++..
T Consensus 147 ~VfiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9985321 1125688999999999999987754
No 143
>PLN02366 spermidine synthase
Probab=98.69 E-value=1.5e-07 Score=99.68 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDvV 138 (659)
..+.+||+||||.|..+..++++. ..+|+.||+++.+++.+++.... ..++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999999884 46899999999999988776532 247899999997654 2235789999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+....-.... .. .-.-..+++.+++.|+|||+++...
T Consensus 170 i~D~~dp~~~-~~--~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGP-AQ--ELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCc-hh--hhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9754322111 10 0014578999999999999997643
No 144
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.68 E-value=1.1e-07 Score=97.31 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
.+..+|||||+|+|.++..+++. +.-+++..|. +.+++.+.+ .++++++.+|+. -++|. +|+++...+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 45579999999999999999877 4458999998 767776655 678999999999 57765 99999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccC--eEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpG--G~lvi~~~~ 180 (659)
.+.+.+ ...+|+++++.|+|| |++++++..
T Consensus 170 ~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 987655 789999999999999 999999865
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.66 E-value=2.9e-07 Score=93.06 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.+.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++. .+++.++++|+...++ +++||+|+++.-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n----~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI----VPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh----ccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 3679999999999999988764 235899999999999877543 2468999999987665 478999999887
Q ss_pred ccccCCccc-----chHHHHHHHHHHHhccccCeE
Q 006149 144 LDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 144 l~~l~~~~~-----~~~~~~~~l~ei~rvLkpGG~ 173 (659)
+..+..... +......++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 775442221 112366788888886676664
No 146
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2e-07 Score=90.12 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=77.9
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 44 fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
.|.|.....+...+.........-.+.+|+|+|||||.++...+-.|...|+|+|+++.+++.+++...+...++.|+++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 34444445555544444432223456789999999999999999999889999999999999887777666678999999
Q ss_pred ecCCCCCCCCcccEEEeccccccc
Q 006149 124 DMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 124 D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
|+.++. +.||.|+.+..+...
T Consensus 101 dv~~~~---~~~dtvimNPPFG~~ 121 (198)
T COG2263 101 DVSDFR---GKFDTVIMNPPFGSQ 121 (198)
T ss_pred chhhcC---CccceEEECCCCccc
Confidence 999974 679999988777654
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.63 E-value=3.9e-07 Score=101.85 Aligned_cols=131 Identities=9% Similarity=0.123 Sum_probs=87.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC---
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--- 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--- 128 (659)
+...+.+++.. .++.+|||+|||+|.++..|+..+ .+|+|+|+|+.+++.+++.+...+ .+++++++|+.+.
T Consensus 285 l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 33344555543 467899999999999999999886 599999999999998877654433 5799999998753
Q ss_pred -CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEE
Q 006149 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (659)
Q Consensus 129 -~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~ 199 (659)
++.+++||+|+....-.. ....++.+.+ ++|++.++++. ....+.+.+......+|.+.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~ 420 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLK 420 (443)
T ss_pred hhhhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEE
Confidence 344578999986432221 2345555544 68887766664 32333333333334456554
No 148
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.62 E-value=2.7e-07 Score=96.41 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=79.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||++|||+|..+..+++.+ ..+++++|+++.+++.+++.... ..++++++.+|..+. ....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888775 57899999999999988765432 236788888887653 222478999997
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...... .... .-....+++.+.+.|+|||++++...
T Consensus 152 D~~~~~-~~~~--~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 152 DSTDPV-GPAE--TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred eCCCCC-Cccc--chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 544221 1111 00135888999999999999998743
No 149
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.62 E-value=6.2e-08 Score=101.19 Aligned_cols=98 Identities=23% Similarity=0.280 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc-------CCC
Q 006149 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFT 588 (659)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F-------gl~ 588 (659)
..||+.++.. ++- +.+...+|||||+|.|.-.+.|.++-...+|+.||+||.|+++|++-- |--
T Consensus 273 ~RYhEsLV~p-als--------~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf 343 (508)
T COG4262 273 YRYHESLVYP-ALS--------SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSF 343 (508)
T ss_pred hhhhheeeec-ccc--------cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCc
Confidence 4699987752 221 124567999999999999999998743679999999999999998443 222
Q ss_pred CCCCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 589 QDKSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 589 ~d~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.|+|+.|+ ..||+.|||...++.| +++|+|++|.
T Consensus 344 ~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l---~e~Gl~VvQa 407 (508)
T COG4262 344 SDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHL---AETGLMVVQA 407 (508)
T ss_pred cCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhc---CcCceEEEec
Confidence 68899655 3589999999999999 9999999988
No 150
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.61 E-value=1.2e-08 Score=100.52 Aligned_cols=101 Identities=25% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l 144 (659)
.+-.++||+|||||..+..|-+.-. .++|+|+|+.|++.+.++- .-=+..++|+..+ ...++.||+|.+..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg----~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKG----LYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhcc----chHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 4578999999999999999877743 8999999999998765442 2223344444433 1456789999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.++...+ .++.-+...|+|||.|.++.-
T Consensus 199 ~YlG~Le-------~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 PYLGALE-------GLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred Hhhcchh-------hHHHHHHHhcCCCceEEEEec
Confidence 9988755 889999999999999998763
No 151
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=8.6e-07 Score=93.79 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=94.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe-ecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~-D~~~l 128 (659)
+.+...+.++... .++..|||.-||||.+.....-.|. +++|+|++..|++-++.....-+ ....+..+ |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 4455556666554 6788999999999999999988887 99999999999998755443222 34545555 99999
Q ss_pred CCCCCcccEEEecccccccCCccc--chHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 129 QFMDETFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+++.+||.|.+-...--...... -..+..++|+.+.++|++||++++...-
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 999889999997543322111111 1245889999999999999999999873
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=1.6e-07 Score=93.21 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=82.1
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC---CCCCCcccEEEeccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM---QFMDETFDVILDKGG 143 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l---~~~~~sFDvVi~~g~ 143 (659)
...+||||||.|.+...+|.. +..+++|+|++...+..+.++.... ..|+.++++|+..+ -++++++|-|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 449999999999999999987 5579999999999999888776654 47999999999883 255789999985432
Q ss_pred ccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 144 LDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 144 l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
=-+........+ .-..++..+.++|+|||.+.+.|-..+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 211110000000 1568999999999999999999876443
No 153
>PRK01581 speE spermidine synthase; Validated
Probab=98.58 E-value=3.8e-07 Score=97.65 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHH--h------hcCCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~--~------~~~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
.+.+||++|||.|..+..+.+.+ ..+|++||+++.+++.+++. . .-..++++++.+|+.+. .-..++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888874 46999999999999988641 1 11347899999999874 334578999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.... +..... ...---..+++.+++.|+|||++++..-+
T Consensus 230 IIvDl~-DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFP-DPATEL-LSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCC-Cccccc-hhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 997632 111100 00011357899999999999999887543
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.58 E-value=1.5e-07 Score=98.91 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
-.+..|||+|||+|.++...|+.|..+|++||.|..+ +.+.+....++ ..++++.+.+.+..+|.++.|+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3578999999999999999999999999999999866 55555544443 35899999999887778899999999887
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+++.-. ..+..+|-.=-++|+|||.++
T Consensus 138 y~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 776421 124455555568999999875
No 155
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.56 E-value=2.3e-07 Score=92.12 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCCeEEEECCCcchHH----HHHHHc-----C-CCeEEEEcCCHHHHHHHHHHh-------------------hcCC---
Q 006149 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRRN-------------------VRDR--- 115 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s----~~La~~-----g-~~~VtgvD~S~~~i~~~~~~~-------------------~~~~--- 115 (659)
+..+|+-.||++|.-. ..|.+. + .-+|+|+|+|+.+|+.|++-. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999754 333341 2 138999999999999886420 0011
Q ss_pred -------CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 116 -------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 116 -------~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..|+|...|+.+.+.+.+.||+|+|.++|-++.... ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 368999999999444568999999999999986544 7899999999999999999865
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.56 E-value=8e-07 Score=88.48 Aligned_cols=120 Identities=11% Similarity=0.091 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM- 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l- 128 (659)
..+.+.+..++.. ..++.+|||+|||+|.++..++..+..+|+++|.++.+++.+++.....+ .+++++++|+.+.
T Consensus 38 d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 3444445555532 12467999999999999987666666799999999999997765544333 4789999998763
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHh--ccccCeEEEEEEcC
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~lvi~~~~ 180 (659)
+...++||+|++...+..- ....++..+.. +|+|+|.+++....
T Consensus 116 ~~~~~~fDlV~~DPPy~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKG--------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCCCC--------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2224579999987663221 13355555554 48999988877654
No 157
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.55 E-value=3.3e-07 Score=93.08 Aligned_cols=96 Identities=24% Similarity=0.356 Sum_probs=75.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
...++||||+|.|..+..|+.. +.+|++.+.|+.|.....++ + .+ +.|..+..-.+.+||+|.|-+.||-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~--vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FT--VLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--Ce--EEehhhhhccCCceEEEeehhhhhcc
Confidence 4578999999999999999765 67999999999776654332 2 22 23333333235689999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
..|. .+|+.+++.|+|+|++++..-
T Consensus 165 ~~P~-------~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 165 DRPL-------TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCHH-------HHHHHHHHHhCCCCEEEEEEE
Confidence 7776 999999999999999988764
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.53 E-value=5.8e-07 Score=95.97 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=61.1
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCcccEEEecc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDvVi~~g 142 (659)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.+++.....+ .+++|+++|+.++.. ..+.||+|+...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC
Confidence 46899999999999999999987 499999999999998877665444 579999999987632 235799999763
No 159
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=5e-07 Score=90.05 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCC------------------------------
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS------------------------------ 116 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~------------------------------ 116 (659)
.+..+|||||.+|.++..+++. |...|.|+||.+..|..|++....-..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4679999999999999999987 777899999999999988766432100
Q ss_pred ------C-------cEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 117 ------D-------MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 117 ------~-------i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+ ..+...|+. .+....||+|+|...--++- ...+..++..+|..+.++|.|||+|++--
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 0 111111222 23456899999865433321 11233459999999999999999998753
No 160
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=9.2e-07 Score=89.49 Aligned_cols=116 Identities=21% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
...+..++.. .++.+|||.|.|+|.++..|+.. | .++|+..|+-+...+.|++.....+ .++++...|+.+.-
T Consensus 83 ~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 3445566654 78999999999999999999964 3 4799999999999999887776533 44899999999976
Q ss_pred CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhh
Q 006149 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185 (659)
Q Consensus 130 ~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~ 185 (659)
+++ .||.|+ ||- +++. ++++.+...|+|||.+++-...-+.+.
T Consensus 160 ~~~-~vDav~----LDm-p~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~ 202 (256)
T COG2519 160 DEE-DVDAVF----LDL-PDPW-------NVLEHVSDALKPGGVVVVYSPTVEQVE 202 (256)
T ss_pred ccc-ccCEEE----EcC-CChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHH
Confidence 654 899998 342 4444 899999999999999999887644443
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=9.7e-07 Score=92.50 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCeEEEECCCcchHHHH----HHHc-C----CCeEEEEcCCHHHHHHHHHHh------------------hc------C-
Q 006149 69 PPQILVPGCGNSRLSEH----LYDA-G----FHGITNVDFSKVVISDMLRRN------------------VR------D- 114 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~----La~~-g----~~~VtgvD~S~~~i~~~~~~~------------------~~------~- 114 (659)
..+|+..||+||.-... +.+. + .-+|+|+|+|+.+|+.|++-. .. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 47999999999975433 3332 1 137999999999999886531 00 0
Q ss_pred -------CCCcEEEEeecCCCCCC-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 115 -------RSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 115 -------~~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...|+|.+.|+.+.+++ .+.||+|+|.+++.++.... ..++++.+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 13588999999886543 57899999999999886544 7799999999999999876654
No 162
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.8e-06 Score=82.65 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=98.3
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
...-+||||||+|..+..|++. +...+.++|+++.+++..++.+..++-++..++.|+.+- +..++.|+++-+...-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 4678999999999999999887 456788999999999988887777777889999998773 3348889888554322
Q ss_pred --------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEee
Q 006149 146 --------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 146 --------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~ 202 (659)
++....++++...+++..+-.+|.|.|.|++.....+...+ +.... ..+|..++..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~e-i~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKE-ILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHH-HHHHHhhcccceeEEE
Confidence 12222344455889999999999999999999987555433 33322 4467666543
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.48 E-value=5.9e-07 Score=87.55 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCC----CCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQ----FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~----~~~~sFDv 137 (659)
..+.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.....+. .++.+...|..+.. ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999988 667999999999 8887765554433 57888888876521 34568999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+...+++.-. ..+.++.-+.++|+++|.+++....
T Consensus 123 IlasDv~Y~~~-------~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDEE-------LFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-GG-------GHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchHH-------HHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999998632 2679999999999999986555543
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.48 E-value=8e-07 Score=90.05 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=88.6
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCC--C-CCCCcccEEEeccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM--Q-FMDETFDVILDKGG 143 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~-~i~~~~~D~~~l--~-~~~~sFDvVi~~g~ 143 (659)
...+||||||.|.+...+|.. +..+++|||+....+..+.++..+.+- |+.+++.|+..+ . +++++.|-|+....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 369999999999999999987 457899999999999999998888776 999999999876 2 45569999986542
Q ss_pred ccccCCcccchH-HHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 144 LDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 144 l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
=-+...-..-.+ .-..+++.+.++|+|||.+.+.|-....
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 222111110001 1568999999999999999999865444
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.48 E-value=9.6e-07 Score=92.33 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.. .++++++++|+.+++++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA--EDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc--cCceEEEEChhhcCCHH
Confidence 344455555543 5678999999999999999999875 99999999999998876553 26899999999998765
Q ss_pred CCcccEEEecccc
Q 006149 132 DETFDVILDKGGL 144 (659)
Q Consensus 132 ~~sFDvVi~~g~l 144 (659)
+-.+|.|+++-..
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4335888876543
No 166
>PLN02672 methionine S-methyltransferase
Probab=98.46 E-value=8.3e-07 Score=106.93 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred CCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----------------CCcEEEEeecCCCCC
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQF 130 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-----------------~~i~~~~~D~~~l~~ 130 (659)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++....+. .+++++++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999998873 3689999999999998866554321 368999999987431
Q ss_pred C-CCcccEEEeccccc----------------------------ccCC---cccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 131 M-DETFDVILDKGGLD----------------------------ALME---PELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 131 ~-~~sFDvVi~~g~l~----------------------------~l~~---~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
. ..+||+|+++-..- ++.. .+++....++++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999764321 1111 13344457899999999999999888755
Q ss_pred c
Q 006149 179 L 179 (659)
Q Consensus 179 ~ 179 (659)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 4
No 167
>PRK03612 spermidine synthase; Provisional
Probab=98.46 E-value=5.3e-07 Score=102.57 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=80.9
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHH--hh------cCCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~--~~------~~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
++.+|||+|||+|..+..+.+++. .+|+++|+++.+++.+++. .. -..++++++++|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6999999999999988762 11 1237899999998874 223478999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|++...-...... ..-.-+.+++.+++.|+|||++++...
T Consensus 377 Ii~D~~~~~~~~~--~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPDPSNPAL--GKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCCCCCcch--hccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9986432211100 000134689999999999999988653
No 168
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.45 E-value=9.5e-07 Score=91.67 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch
Confidence 344445555543 4678999999999999999999864 899999999999988766533 46899999999998765
Q ss_pred CCcccEEEeccccc
Q 006149 132 DETFDVILDKGGLD 145 (659)
Q Consensus 132 ~~sFDvVi~~g~l~ 145 (659)
.||.|+++-.++
T Consensus 91 --~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 --EFNKVVSNLPYQ 102 (258)
T ss_pred --hceEEEEcCCcc
Confidence 489999877654
No 169
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.45 E-value=1.3e-07 Score=96.75 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC----CC
Q 006149 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 590 (659)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~----~d 590 (659)
.+.|..++++ +++.. +++|+++||||+|.|...+...+|-.--+|+.||||..|++++++||.-- ++
T Consensus 104 e~~Yqemi~~-l~l~s--------~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~ 174 (337)
T KOG1562|consen 104 EFAYQEMIAH-LALCS--------HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEG 174 (337)
T ss_pred cccceeeeec-ccccc--------CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCC
Confidence 5778876654 67765 48999999999995555555444433459999999999999999999322 67
Q ss_pred CCeeEE------------------------------ecccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 591 KSLKVF------------------------------NHLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 591 ~rl~vf------------------------------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
+|+.+. ..+|...|+++++++| +++|+++.+. +.-+...++.+.+
T Consensus 175 ~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aL---k~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDAL---KGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred CceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhh---CCCcEEEEecceehHHHHHHHHHHH
Confidence 777333 3489999999999999 9999887755 4444444444444
No 170
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.44 E-value=1.8e-06 Score=96.29 Aligned_cols=100 Identities=9% Similarity=0.135 Sum_probs=73.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDvVi~~ 141 (659)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++.+...+ .+++++++|+.+. ++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456899999999999999999875 489999999999998877654443 5799999998763 2335679999954
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..-..+ ...+++.+.+ ++|++.++++
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEEc
Confidence 331111 1355665554 7888765554
No 171
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=2.1e-07 Score=91.78 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=93.2
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
....++|||||-|.....|...+..+++-+|.|-.|++.++.. ....-.+.+.++|-+.++|.+++||+|++...+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 4679999999999999999999888999999999999876432 122234667889999999999999999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhh
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 185 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~ 185 (659)
.+.. ..+..++..|||+|.|+...++.+...
T Consensus 151 NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLy 181 (325)
T KOG2940|consen 151 NDLP-------GSMIQCKLALKPDGLFIASMLGGDTLY 181 (325)
T ss_pred ccCc-------hHHHHHHHhcCCCccchhHHhccccHH
Confidence 7765 778999999999999999888766543
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.42 E-value=2.1e-06 Score=87.98 Aligned_cols=122 Identities=21% Similarity=0.361 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (659)
|+.=...+..++.. .|+.+|||.|.|+|.++..|+.. +.++|+..|+.+...+.|++.....+ .++++.+.|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34444556677765 79999999999999999999975 34799999999999999988876655 4799999999
Q ss_pred CCCCCC---CCcccEEEecccccccCCcccchHHHHHHHHHHHhcc-ccCeEEEEEEcCCchhhc
Q 006149 126 TSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLG 186 (659)
Q Consensus 126 ~~l~~~---~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvL-kpGG~lvi~~~~~~~~~~ 186 (659)
.+..|+ +..||.|+ || ++++. .++..+.+.| ++||++++...+-+-+.+
T Consensus 102 ~~~g~~~~~~~~~Davf----LD-lp~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVF----LD-LPDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp GCG--STT-TTSEEEEE----EE-SSSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred ecccccccccCcccEEE----Ee-CCCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 765442 25799987 44 34444 7799999999 899999999876444433
No 173
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.41 E-value=1.6e-06 Score=85.77 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=88.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l 128 (659)
.+.+.|.+++.. .+.+|||||||||..+.+++.. ..-...-.|..+..+....+.....+ +++ .-+..|+.+.
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 456677777754 3336999999999999999987 33466778999887665555443332 443 3567888776
Q ss_pred CCC--------CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 129 QFM--------DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 129 ~~~--------~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+.+ .++||.|++..++|.+.... .+.+++.+.++|++||.|++-.
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEeC
Confidence 332 45899999999999876544 7899999999999999988765
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.38 E-value=1.4e-06 Score=96.89 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=73.5
Q ss_pred CCeEEEECCCcchHHHHHHHcC-----CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-----~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+..|||+|||+|-++...++.+ ..+|++|+-++.++..++++.... ..+|+++.+||++...+ .+.|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 4689999999999997776654 469999999998887665552232 37899999999999765 589999987
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
..- .+.+.+ .....|....|.|||||+++
T Consensus 266 lLG-sfg~nE----l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNE----LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTT----SHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-Cccccc----cCHHHHHHHHhhcCCCCEEe
Confidence 543 344433 25577899999999999887
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.38 E-value=1.5e-06 Score=86.86 Aligned_cols=102 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDv 137 (659)
...+||||||++|..+.+++.. + .++|+.+|+++...+.+++.....+ .+++++.+|+.+. + -+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4679999999999999999976 2 3699999999999998877665544 5799999998763 1 11358999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|+.-+. ......++..+.++|+|||.+++-..
T Consensus 125 VFiDa~----------K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDAD----------KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEST----------GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEccc----------ccchhhHHHHHhhhccCCeEEEEccc
Confidence 994321 11256899999999999999998764
No 176
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.38 E-value=2.6e-06 Score=83.48 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=81.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CC--------eEEEEcCCHHHHHHHHHHhhcCC--CCc
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDR--SDM 118 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~--------~VtgvD~S~~~i~~~~~~~~~~~--~~i 118 (659)
+.+...+..+... .++..|||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++.....+ ..+
T Consensus 14 ~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 3455566666654 577899999999999997776652 22 28899999999998877665444 358
Q ss_pred EEEEeecCCCCCCCCcccEEEecccccccCCc-ccchHHHHHHHHHHHhcccc
Q 006149 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEP-ELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 119 ~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~-~~~~~~~~~~l~ei~rvLkp 170 (659)
.+.+.|+.++++.++++|+|+++.....-... .+.......+++++.++|++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 89999999999878999999988766543322 12234578899999999999
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.37 E-value=3.9e-06 Score=86.77 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=67.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (659)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... .++++++++|+.+++++
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence 444445555543 5678999999999999999999875 799999999999988665532 57899999999998765
Q ss_pred CCccc---EEEeccccc
Q 006149 132 DETFD---VILDKGGLD 145 (659)
Q Consensus 132 ~~sFD---vVi~~g~l~ 145 (659)
.|| +|+++-.++
T Consensus 91 --~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 --DFPKQLKVVSNLPYN 105 (253)
T ss_pred --HcCCcceEEEcCChh
Confidence 566 777654433
No 178
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.35 E-value=1.9e-06 Score=85.00 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=73.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (659)
...+.+++... ++...|-|+|||.+.++..+. .+. .|+..|+-. .+-.+..+||.+.|++++
T Consensus 60 vd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva--------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA--------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC--------------CCCCEEEecCccCcCCCC
Confidence 45567777651 345799999999999997653 334 799999865 122467899999999999
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh-hcchhhhh-ccCceEEEee
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (659)
+.|+++..-+|... . +..++.|+.|+|||||.+.|.+....-. .+.+.... ..|+.+....
T Consensus 122 svDv~VfcLSLMGT---n-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 122 SVDVAVFCLSLMGT---N-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -EEEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEEhhhhCC---C-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 99999975554432 1 6799999999999999999999753211 12233333 3366655543
No 179
>PLN02476 O-methyltransferase
Probab=98.35 E-value=3.9e-06 Score=87.43 Aligned_cols=102 Identities=9% Similarity=0.033 Sum_probs=79.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C----CCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F----MDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~----~~~sFD 136 (659)
.+..+|||+|||+|..+.+++.. + .+.|+++|.++...+.+++.....+ ++++++.+|+.+. + + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999874 2 3579999999999998877766554 5799999998763 1 1 136899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.-+. ......+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9994321 1236789999999999999988754
No 180
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=5.2e-06 Score=84.34 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (659)
++...+.+.+.+.....+..|||+|||+|..+..++.. +...|++||.|+.+|.-+.+.+.... .++..+..+|+..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33444445444322234568999999999999988776 55789999999999987765544332 4566665555442
Q ss_pred -----CCCCCcccEEEeccccc-------------------ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 -----QFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 -----~~~~~sFDvVi~~g~l~-------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+...+++|+++++...- ++....++...+..++.-+.|.|+|||.+.+...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 34568999999875431 1111222334478888999999999999988765
No 181
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.33 E-value=3.1e-06 Score=84.96 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE-eecC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~-~D~~ 126 (659)
+.-..|..++.. .+..+|||||.+.|..+.+|+.. + .+++|.||+++...+.+++...+.+ +++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 334444444443 46789999999999999999986 3 4689999999999999988776654 4577777 4766
Q ss_pred CC-C-CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 127 SM-Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 127 ~l-~-~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. . ...++||+|+. |+- .....++|+.+.++|+|||.+++-...
T Consensus 123 ~~l~~~~~~~fDliFI----Dad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 123 DVLSRLLDGSFDLVFI----DAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHhccCCCccEEEE----eCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 53 2 34689999993 332 122569999999999999999986643
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.30 E-value=5.7e-06 Score=78.33 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=93.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ- 129 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~- 129 (659)
++..+..-+.. ..+.-|||+|.|||.++..+..+|. .++++++.|+.+...+.++ .+.++++.+|+.++.
T Consensus 36 lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~----~p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL----YPGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh----CCCccccccchhhHHH
Confidence 34444444443 5678999999999999999999864 6899999999999877554 477889999998874
Q ss_pred ----CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 130 ----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ----~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+..||.|++.-.+-.++... .-++++.+...|.+||.++..+++
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~-----~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHR-----RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHH-----HHHHHHHHHHhcCCCCeEEEEEec
Confidence 5677899999876666654333 678999999999999999999997
No 183
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.29 E-value=4.5e-06 Score=91.24 Aligned_cols=101 Identities=10% Similarity=0.101 Sum_probs=73.4
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~ 145 (659)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.+++.+...+ .+++|+++|+.+... ...+||+|+....-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999877 489999999999998876654443 479999999976421 124699998654422
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+ ...+++.+. .++|++.+++...
T Consensus 312 G~---------~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---------GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---------cHHHHHHHH-hcCCCeEEEEEeC
Confidence 11 224455554 4788887777653
No 184
>PRK04148 hypothetical protein; Provisional
Probab=98.29 E-value=4.4e-06 Score=77.40 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcch-HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~-~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
.+...+.+.+.. ..+.+|||||||+|. .+..|++.|+ +|+++|+++.+++.+++. .+.+++.|+++.++
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 445556666544 346799999999996 8999998887 999999999988877543 37899999998653
Q ss_pred C-CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 131 ~-~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
. -+.+|+|.+. ..+.+ +...+-++.+-+ |.-+++..++.+.
T Consensus 73 ~~y~~a~liysi------rpp~e----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSI------RPPRD----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEe------CCCHH----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 2 2467888753 22220 233333333332 5557777776443
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.28 E-value=2.4e-06 Score=88.50 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
-.+..|||+|||+|.++...+..|.++|++|+.|+ |.+.+++..+.+. .+|+++.+.+++..+| ++.|+|++...-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35789999999999999999999999999999887 4445544443332 6899999999998876 789999987766
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+.+-+. +..+.++ ..+++|+|.|.++
T Consensus 254 ~mL~NE----RMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNE----RMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhhhH----HHHHHHH-HHHhhcCCCCccc
Confidence 555432 2244444 4569999999876
No 186
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.28 E-value=7.3e-06 Score=87.22 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEE--EEeecCCC----CC--CCC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSM----QF--MDE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~S~~~i~~~~~~~~-~~~~~i~~--~~~D~~~l----~~--~~~ 133 (659)
++..|+|+|||+|.-+..|.+. + ...++++|+|..+++.+.++.. ...+.+.+ +++|..+. +- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4668999999999987766553 1 2479999999999999988887 55576665 88988763 11 123
Q ss_pred cccEEEecc-cccccCCcccchHHHHHHHHHHHh-ccccCeEEEEEE
Q 006149 134 TFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g-~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~lvi~~ 178 (659)
...+++.-| ++.++...+ ...+|+++++ .|+|||.|++..
T Consensus 156 ~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEec
Confidence 467777665 788776555 7799999999 999999987744
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.27 E-value=4.7e-06 Score=82.39 Aligned_cols=105 Identities=10% Similarity=-0.087 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-CC-CcccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-MD-ETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-~~-~sFDvVi~~ 141 (659)
.+.++||++||+|.++..++.+|...|+++|.++.+++.+++.....+ .+++++++|+.+. . + .. ..||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999988899999999999987766554433 3688999999553 2 2 12 247888865
Q ss_pred ccccccCCcccchHHHHHHHHHHH--hccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~lvi~~~~ 180 (659)
..+..- ....++..+. .+|+++|.+++-...
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 444321 1234444443 478888877766543
No 188
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.26 E-value=7.1e-06 Score=85.90 Aligned_cols=133 Identities=16% Similarity=0.095 Sum_probs=95.2
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CC
Q 006149 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SD 117 (659)
Q Consensus 41 ~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~ 117 (659)
+....+|-+..+.+..+.++. .+.+|||+-|=||.++...+..|..+|++||.|..+++.+++.+..++ .+
T Consensus 102 gqktGlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 102 GQKTGLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSTSS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCcceEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 355568888888888888875 368999999999999999888888899999999999999987766554 47
Q ss_pred cEEEEeecCCC-C-C-CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 118 MRWRVMDMTSM-Q-F-MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 118 i~~~~~D~~~l-~-~-~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++|+++|+.+. . . ..++||+|+.-..-.. .....-.....+++..+.++|+|||.+++++.+
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 89999999763 1 1 2468999995332221 111111234778899999999999999888876
No 189
>PLN02823 spermine synthase
Probab=98.24 E-value=7e-06 Score=88.07 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=79.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDvVi~ 140 (659)
.+.+||.+|+|.|..+.++.+. +..+|+.||+++.+++.+++.... ..++++++.+|.... ....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999988886 457899999999999988766532 247899999998875 334578999996
Q ss_pred cccccccCCcccchHH-HHHHHH-HHHhccccCeEEEEEE
Q 006149 141 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCLT 178 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~-~~~~l~-ei~rvLkpGG~lvi~~ 178 (659)
-. .+...... .... -..+++ .+.+.|+|||++++..
T Consensus 183 D~-~dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCc-chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 52 12110000 0001 236777 8999999999988754
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.24 E-value=4.6e-06 Score=88.03 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~ 130 (659)
....+.+.+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++.... .++++++++|+.+.++
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34445555443 5778999999999999999998864 8999999999999988776543 3679999999988765
Q ss_pred CCCcccEEEecccccc
Q 006149 131 MDETFDVILDKGGLDA 146 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~ 146 (659)
..||+|+++-..+.
T Consensus 100 --~~~d~VvaNlPY~I 113 (294)
T PTZ00338 100 --PYFDVCVANVPYQI 113 (294)
T ss_pred --cccCEEEecCCccc
Confidence 36899987654443
No 191
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.21 E-value=1e-05 Score=88.09 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=97.2
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~ 122 (659)
+|-+....+..+.+++ .+.+||++-|=||.++...+..|..+||+||.|..+++-+++...-++ .++.|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 5555556666666665 378999999999999999999998899999999999999877765554 4589999
Q ss_pred eecCCC-C---CCCCcccEEEeccc-ccccCCcc-cchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 123 MDMTSM-Q---FMDETFDVILDKGG-LDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 123 ~D~~~l-~---~~~~sFDvVi~~g~-l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+|+.+. . -...+||+|+.-.. +---.... ........++..+.++|+|||.+++++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999875 1 23459999995322 21111111 112337889999999999999999999763
No 192
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=9.1e-06 Score=82.55 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCCC-----CCcccEEEec
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQFM-----DETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~~-----~~sFDvVi~~ 141 (659)
++.+|||+|||+|.++..+++.|...|+|+|+++.++....+ ..+++ .+...|+.....+ -..||+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~----~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR----QDERVKVLERTNIRYVTPADIFPDFATFDVSFIS 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh----cCCCeeEeecCCcccCCHhHcCCCceeeeEEEee
Confidence 567999999999999999999988899999999987764211 22333 2344455433211 1245555532
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..++..+.+.|++ |.+++.-
T Consensus 151 ---------------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 151 ---------------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------------hHhHHHHHHHHhCc-CeEEEEc
Confidence 22568899999999 7665543
No 193
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=2.7e-06 Score=87.22 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=96.9
Q ss_pred HhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHH
Q 006149 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (659)
Q Consensus 28 ~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~ 107 (659)
.+|.-.+|........-..+..|+.....+... ..+..++|+|||+|..+..- ....+++.|.+...+.-+
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHHHHhcc------CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccc
Confidence 456666776653221223455565554444332 24789999999999876421 223689999999777644
Q ss_pred HHHhhcCCCCc-EEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 108 LRRNVRDRSDM-RWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 108 ~~~~~~~~~~i-~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++ .+. ....+|+.++|+.+.+||.+++..+++|+.... ....+++++.|.|+|||...+..++
T Consensus 82 k~------~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 82 KR------SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cc------CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 21 223 688899999999999999999999999997644 5889999999999999998776654
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.14 E-value=1.5e-05 Score=82.64 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc---------------
Q 006149 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------------- 113 (659)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~--------------- 113 (659)
+..+...|.++... .....+.+||..|||-|+++..++..|+ .+.|.|+|--|+-...-....
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 33444445555431 1123467999999999999999999999 999999999887532211110
Q ss_pred --------------------------CCCCcEEEEeecCCCCCCC---CcccEEEecccccccCCcccchHHHHHHHHHH
Q 006149 114 --------------------------DRSDMRWRVMDMTSMQFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (659)
Q Consensus 114 --------------------------~~~~i~~~~~D~~~l~~~~---~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei 164 (659)
...++....+|+.+.-.++ ++||+|+....+|-.. ++-.++..|
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~-------Ni~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE-------NIIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH-------HHHHHHHHH
Confidence 0124566667777663333 7999999887776533 267999999
Q ss_pred HhccccCeEEEEEEcC
Q 006149 165 KRLLKSGGKFVCLTLA 180 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~ 180 (659)
.++|||||+.|=..+.
T Consensus 189 ~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 189 EHLLKPGGYWINFGPL 204 (270)
T ss_pred HHHhccCCEEEecCCc
Confidence 9999999977655443
No 195
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.13 E-value=1.5e-05 Score=82.64 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=87.3
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHH----HHHHHcC------CCeEEEEcCCHHHHHHHHHH-----hh--
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRR-----NV-- 112 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s----~~La~~g------~~~VtgvD~S~~~i~~~~~~-----~~-- 112 (659)
+..+...+...+-.......-+|+-.||++|.-. ..|.+.+ .-+|+|+|++..+|+.|+.- ..
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 4445555554332211113679999999999654 3333332 24899999999999987631 11
Q ss_pred ------------cC--C---------CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccc
Q 006149 113 ------------RD--R---------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 113 ------------~~--~---------~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
+. + ..|.|...|+.+.++..+.||+|+|..++-++..+. ..+++..++..|+
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~ 232 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLK 232 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhC
Confidence 00 0 247888888888764457899999999999986554 6799999999999
Q ss_pred cCeEEEEEE
Q 006149 170 SGGKFVCLT 178 (659)
Q Consensus 170 pGG~lvi~~ 178 (659)
|||++++-.
T Consensus 233 ~gG~LflG~ 241 (268)
T COG1352 233 PGGLLFLGH 241 (268)
T ss_pred CCCEEEEcc
Confidence 999999865
No 196
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.11 E-value=1.2e-05 Score=82.68 Aligned_cols=101 Identities=16% Similarity=0.038 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETFD 136 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sFD 136 (659)
...+|||||+++|..+..++.. + .++|+.+|.++...+.+++.....+ .+++++.+|+.+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 5679999999999999999875 2 3689999999999988877766554 6899999998764 2 1 136899
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|+.- +- ......++..+.++|+|||.+++-.
T Consensus 159 ~iFiD----ad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVD----AD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEec----CC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99943 21 2235688999999999999987743
No 197
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=5.5e-06 Score=76.51 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=79.4
Q ss_pred CccccccchhHHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE
Q 006149 42 DSFEWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~ 120 (659)
-..|.|...+.+..-+...+.. ...-.+.+++|+|||.|.++....-.+...|+|+|+.+.+++.+.+.+.+---++.+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidl 100 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDL 100 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhe
Confidence 3456677777887767666654 122467899999999999996665556678999999999998775444333357899
Q ss_pred EEeecCCCCCCCCcccEEEeccccc
Q 006149 121 RVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 121 ~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
+++|+.++.+..+.||.++.+..+.
T Consensus 101 Lqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eeeeccchhccCCeEeeEEecCCCC
Confidence 9999999988789999999776554
No 198
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.08 E-value=1.7e-05 Score=79.96 Aligned_cols=119 Identities=19% Similarity=0.303 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
.+.+.|.. ......|.|+|||.+.++. .-...|+..|+.. .+-.++.+||.+.|+++++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 34455543 1346799999999998876 2234799999754 23457889999999999999
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh-hcchhhhh-ccCceEEEee
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (659)
|+++..-+| +... +..++.+++|+|++||.+++.+...... ...+.+.+ ..|+.+....
T Consensus 230 DvaV~CLSL--Mgtn------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 230 DVAVFCLSL--MGTN------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cEEEeeHhh--hccc------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 999964333 3221 6689999999999999999998753211 11233333 3366555443
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.07 E-value=1.4e-05 Score=90.76 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=86.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDvVi~~g~ 143 (659)
....+||||||+|.++..+|.. +..+++|+|++...+..+.++....+ .|+.+++.|+..+ -++++++|.|+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 5689999999999999999987 45789999999998888877754433 6888888887543 367889999986543
Q ss_pred ccccCCcccchHH-HHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 144 LDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 144 l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
=-|........+. -..+++.+.++|+|||.+.+.|-..+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 2221111101111 5689999999999999999998765443
No 200
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.06 E-value=9e-06 Score=79.96 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=82.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
.+++.+..++... .-++.++||+-||+|.++.+.+.+|...|+.||.++.++..+++....-+ .++..+++|....
T Consensus 27 rvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 27 RVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 4455555655531 02578999999999999999999999999999999999987766554433 3578889886543
Q ss_pred C---CCCCcccEEEecccccccCCcccchHH-HHHHHHHHH--hccccCeEEEEEEcCC
Q 006149 129 Q---FMDETFDVILDKGGLDALMEPELGHKL-GNQYLSEVK--RLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 ~---~~~~sFDvVi~~g~l~~l~~~~~~~~~-~~~~l~ei~--rvLkpGG~lvi~~~~~ 181 (659)
. ....+||+|+.-..... .. ...++..+. .+|+++|.+++-....
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~--------~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAK--------GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTS--------CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCccc--------chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1 24689999996433332 11 357777776 8999999888877553
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.7e-05 Score=76.48 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=84.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhhcC-----------CCC
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~~~-----------~~~ 117 (659)
.....+.++|.. ...|+.+.||+|.|+|.++..++.. ...+.+|||.-+..++..++..... ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344455555541 1258999999999999999888754 2345699999999999776654332 246
Q ss_pred cEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 118 i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.++.+|.....-+..+||.|.+-... .+..+++...|++||++++--.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------------cccHHHHHHhhccCCeEEEeec
Confidence 889999999887778899999975221 2567888999999999988654
No 202
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.01 E-value=6.9e-06 Score=90.32 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=78.2
Q ss_pred HHHHHHHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEE--EEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 52 QLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT--NVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 52 ~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~Vt--gvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+...|.+.+.. .....-..+||+|||.|.++..|.+++...++ .-|..+..++.+.++- -+ ..+-.+--..+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG---vp-a~~~~~~s~rL 175 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG---VP-AMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC---cc-hhhhhhccccc
Confidence 444455555543 11123357999999999999999988652221 2255555555554432 11 11112234578
Q ss_pred CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
||++++||+|-|..++......+ + .+|-++.|+|+|||+|+.+..
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~-g-----~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND-G-----FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cCCccchhhhhcccccccchhcc-c-----ceeehhhhhhccCceEEecCC
Confidence 99999999999998887654433 2 689999999999999988764
No 203
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.00 E-value=8.2e-06 Score=79.80 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CC--CCcc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FM--DETF 135 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~--~~sF 135 (659)
.+.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+.+.. +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 469999999883 12255666677765431 11 2689
Q ss_pred cEEEecccccccCCcccc----hHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc
Q 006149 136 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 194 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~ 194 (659)
|+|++-++.........+ .......+.-+...|+|||.+++-.+..+... .+......
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l~~ 154 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLLKR 154 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHHHH
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHHHh
Confidence 999998865544432211 12356666677788999999999888765553 44444433
No 204
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.99 E-value=6.4e-05 Score=67.86 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=73.0
Q ss_pred EEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC--CCCCC-CcccEEEecccc
Q 006149 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQFMD-ETFDVILDKGGL 144 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~--l~~~~-~sFDvVi~~g~l 144 (659)
++|+|||+|..+ .+..... ..++++|+++.++......... ... +.+...|... +++.. ..||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3799999999999874433322 222 6888888887 67776 489999444444
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
++.. ....+.++.+.|+|+|.+++......
T Consensus 130 ~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLP--------PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4332 24889999999999999999887643
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.96 E-value=0.0002 Score=76.29 Aligned_cols=182 Identities=14% Similarity=0.190 Sum_probs=103.7
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--------CCCeEEEEcCCHHHHHHHHHHhh
Q 006149 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 41 ~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--------g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
.+...-|.....+...+.+++.. .++.+|||.+||+|.+...+.+. ...+++|+|+++.++..++....
T Consensus 22 ~k~~G~~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 22 RKKLGQFYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp TTSCGGC---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ccccceeehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34445556667888888888865 56778999999999998777662 34589999999998876544332
Q ss_pred cCC---CCcEEEEeecCCCCCC--CCcccEEEeccccccc--CCccc------------chHHHHHHHHHHHhccccCeE
Q 006149 113 RDR---SDMRWRVMDMTSMQFM--DETFDVILDKGGLDAL--MEPEL------------GHKLGNQYLSEVKRLLKSGGK 173 (659)
Q Consensus 113 ~~~---~~i~~~~~D~~~l~~~--~~sFDvVi~~g~l~~l--~~~~~------------~~~~~~~~l~ei~rvLkpGG~ 173 (659)
-.+ ......+.|....+.. ...||+|+++..+... ..... ....--.++..+.+.|++||+
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred hhccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 222 2346888887765433 4789999987665543 11110 001123478999999999999
Q ss_pred EEEEEcCCc----hhhcchhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEecCC
Q 006149 174 FVCLTLAES----HVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (659)
Q Consensus 174 lvi~~~~~~----~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (659)
++++....- .....+-+.+ ..++-..+-.++..-=........+++.+|...
T Consensus 179 ~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 179 AAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred eeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 887775311 1111122222 223444455555321122455668888887664
No 206
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.94 E-value=7.5e-05 Score=83.60 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEE---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVIL--- 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi--- 139 (659)
.++.+|||++||.|.-|..++.. +.+.|+++|+++.-+..+.+...+.+ .++.+.+.|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 67899999999999999999886 33589999999999988877765544 56788888887753 2246799999
Q ss_pred -ecccccccCCcccc-----------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 -DKGGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 -~~g~l~~l~~~~~~-----------~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|.|.--.-.+++.- ...-.++|..+.++|||||+++-+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33321111111100 012578999999999999999998876
No 207
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=86.81 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++..++|+|||-|..+...+..+...++|+|.++.-+.+......... ....++..|+.++||++..||.+.+..+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4567999999999999999988876799999999977766554443322 34556899999999999999999999999
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|..+.. ..+++++|+++|||++++-++.
T Consensus 189 ~~~~~~~-------~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLE-------KVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHH-------HHHHHHhcccCCCceEEeHHHH
Confidence 9988765 9999999999999999987754
No 208
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.93 E-value=4.8e-05 Score=83.22 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++....++ .++.+.++|+..+-...+.||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999875 55689999999999998866554333 4577899998764211467999986431
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..+ ..++..+.+.+++||.+++.
T Consensus 135 -Gs~-------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP-------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc-------HHHHHHHHHHhcCCCEEEEE
Confidence 222 26788878889999999888
No 209
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.93 E-value=1.6e-05 Score=81.80 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred cCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHH
Q 006149 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (659)
Q Consensus 23 ~~f~~~eyWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~ 102 (659)
..|....|-+.+|.... +...+ .+-.......+.+.+.. ....+.++||||||+-.....-+..-+.+|+..|+++.
T Consensus 14 ~~FdP~~Yl~~yY~~~~-~~~~~-~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPS-GDDAE-DEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp HHB-HHHHHHHHHSTSS-S-CHH-HHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred hcCCHHHHHHHhcCCCc-cCccc-chhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence 45777778888886541 11110 00011122233333332 22346799999999966544444445678999999999
Q ss_pred HHHHHHHHhhcCC-----------------------------CCcE-EEEeecCCCC-CCC-----CcccEEEecccccc
Q 006149 103 VISDMLRRNVRDR-----------------------------SDMR-WRVMDMTSMQ-FMD-----ETFDVILDKGGLDA 146 (659)
Q Consensus 103 ~i~~~~~~~~~~~-----------------------------~~i~-~~~~D~~~l~-~~~-----~sFDvVi~~g~l~~ 146 (659)
-++.+.+.....+ ..|+ ++..|+++.+ +.. ..||+|++..+|..
T Consensus 91 N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~ 170 (256)
T PF01234_consen 91 NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLES 170 (256)
T ss_dssp HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHH
T ss_pred hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHH
Confidence 8887655433210 1133 6778988863 332 35999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.....+ ...++++++.++|||||.|+++...
T Consensus 171 a~~d~~---~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 171 ACKDLD---EYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp H-SSHH---HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HcCCHH---HHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 765432 3889999999999999999998754
No 210
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.93 E-value=6.9e-06 Score=81.68 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC--CCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM--QFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l--~~~~~sFDvVi~ 140 (659)
+.+.+|||.+.|-|..+...+++|...|+.++.++.+++-+ ..+.-.. ..++.+.+|+.+. .|+|++||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-KLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-ccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 46899999999999999999999988999999999999744 2221111 3589999999886 688999999994
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...-..+.. .--.+.+..+++|+|||||+++--+-
T Consensus 212 DPPRfS~Ag----eLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 212 DPPRFSLAG----ELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred CCCccchhh----hHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 222111111 11156899999999999999976553
No 211
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.91 E-value=5e-05 Score=75.61 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=72.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
+..+.+.+ .++..|||+.||-|.++..+++. ....|+++|+++.+++.+++....++ ..+..+++|..++..
T Consensus 92 r~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 92 RRRIANLV-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp HHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred HHHHHhcC-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 33455554 36899999999999999999984 33589999999999998876655444 568899999998854
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
.+.||-|++...-.. ..+|..+.+++++||.+-
T Consensus 167 -~~~~drvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred -ccccCEEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 689999997543222 267888999999998763
No 212
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.90 E-value=3.5e-05 Score=68.59 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc-CCCCCCCeeEE-------------------ec----
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVF-------------------NH---- 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F-gl~~d~rl~vf-------------------~~---- 598 (659)
.+||-||.|.|.++..+.+.+|..++++||+||.+++.|++.+ .....+|+.++ ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 82 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH 82 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence 6899999999999999999889999999999999999999998 22223444221 11
Q ss_pred -ccc----hhHHHHHHHhhccCCCCcEEEec
Q 006149 599 -LFC----LQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 599 -l~~----~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
++. ..+++.+.+.| +|+|.++.+
T Consensus 83 ~~~~~~~~~~~l~~~~~~L---~pgG~lvi~ 110 (112)
T PF12847_consen 83 FLLPLDERRRVLERIRRLL---KPGGRLVIN 110 (112)
T ss_dssp GCCHHHHHHHHHHHHHHHE---EEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhc---CCCcEEEEE
Confidence 111 23477788888 888888765
No 213
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.89 E-value=0.00017 Score=74.48 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-C--CCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCCC-CC--CCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ-FM--DETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g--~~~VtgvD~S~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l~-~~--~~sFDvV 138 (659)
..+-+||||.||.|+........ + ..+|...|+|+..++..++...+.+ .++ +|.++|+.+.. +. +-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999987666554 3 3689999999999998887776655 455 99999998852 21 3457999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+..|.++.+.+.+ .+...+.-+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999887654 36778999999999999998765
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00015 Score=75.89 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=80.9
Q ss_pred CeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCC-CCCCCcccEEEecc
Q 006149 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSM-QFMDETFDVILDKG 142 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l-~~~~~sFDvVi~~g 142 (659)
.+||.||-|.|..+..+.++. ..+++.||+.+.+++-+++.+.... ++++.+..|..+. .-...+||+|+.-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999985 5799999999999998877654432 7899999998876 21224899999643
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+=. ....+ .---..+++.+++.|+++|+++.-+
T Consensus 158 tdp-~gp~~--~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-VGPAE--ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-CCccc--ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 322 11100 0003589999999999999999984
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.87 E-value=6.9e-05 Score=77.25 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCC-cccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDE-TFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~-sFDvVi 139 (659)
.+.+||-||-|.|..+..+.+.. ..+|+.||+++.+++.+++-... ..++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998885 57999999999999988665432 247899999999775 22234 899999
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.-..- ....... ---..+++.+++.|+|||++++..
T Consensus 156 ~D~~d-p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPN--LFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCccc--ccCHHHHHHHHhhcCCCcEEEEEc
Confidence 63322 1111100 013589999999999999999876
No 216
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.86 E-value=5.8e-05 Score=79.88 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=86.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
-...+|+|.|.|+.+..+.. -|.+|-++++....+.++..... +.|..+-+|+..- .|. -|+||.+++|+++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 37899999999999999988 56689999999988876654442 5589999999886 443 46999999999998
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
+.+ ..++|++++..|+|||.+++.+..-+
T Consensus 251 Ded-----cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 251 DED-----CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred hHH-----HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 876 78999999999999999999997433
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=97.84 E-value=0.00018 Score=74.49 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCCCCCCCcccEEEec
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQFMDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l~~~~~sFDvVi~~ 141 (659)
+.+.+||-+|.|.|..++++.++.. +|+.||+.+.+++.+++-... ..|+++++.. +.+ -..++||+|+.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 4568999999999999999999974 999999999999988763322 3367777652 211 123689999965
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+ . + ..+.+.+++.|+|||.++.-.-
T Consensus 147 s~----~-~-------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 147 QE----P-D-------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CC----C-C-------hHHHHHHHHhcCCCcEEEECCC
Confidence 43 1 1 2678999999999999998653
No 218
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=8.5e-05 Score=76.43 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC-
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE- 133 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~- 133 (659)
..+.+.+.. .+++.|||||+|.|.+|..|++.+. .|+++++++.++..++++.. ...+++.+.+|+...+++.-
T Consensus 20 ~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 20 DKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc
Confidence 334444443 5689999999999999999999987 79999999999998877653 56789999999999988743
Q ss_pred cccEEEeccccc
Q 006149 134 TFDVILDKGGLD 145 (659)
Q Consensus 134 sFDvVi~~g~l~ 145 (659)
.++.|+++--.+
T Consensus 95 ~~~~vVaNlPY~ 106 (259)
T COG0030 95 QPYKVVANLPYN 106 (259)
T ss_pred CCCEEEEcCCCc
Confidence 678888764433
No 219
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.82 E-value=0.0001 Score=78.52 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-C--CCcEEEE-eecCCCC----CCCCcccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSMQ----FMDETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~--~~i~~~~-~D~~~l~----~~~~sFDvV 138 (659)
...++||||||+|.+...|+.. ...+++|+|+++.+++.+++....+ . .++.+.+ .|..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999888777665 2248999999999999887766554 2 3566653 3433321 246789999
Q ss_pred EecccccccC
Q 006149 139 LDKGGLDALM 148 (659)
Q Consensus 139 i~~g~l~~l~ 148 (659)
+|+.-++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998887643
No 220
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.82 E-value=4.7e-05 Score=82.90 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=48.7
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+|||++||+|.++..+++. ..+|++||+++.+++.+++.....+ .+++++++|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 57999999999999988776 4589999999999998876654443 4799999998763
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00037 Score=69.16 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+|+|+||-.|.++..+++. +. ..|+++|+.+ | ...+++.++++|+++.+ +....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 46899999999999999999887 32 3599999988 3 23467999999999864 3445679
Q ss_pred EEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhcc-CceEEE
Q 006149 137 VILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSV 200 (659)
Q Consensus 137 vVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~-~w~~~~ 200 (659)
+|++-++-...... .....+...++.-+..+|+|||.|++-.+-.... +.++..++. +..+..
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~-~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF-EDLLKALRRLFRKVKI 181 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH-HHHHHHHHHhhceeEE
Confidence 99965443111111 0111236778888889999999999988764433 334444443 333433
No 222
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.76 E-value=8.2e-05 Score=80.76 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=48.9
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+|||+|||+|.++..|++.. ..|++||+++.+++.+++.....+ .+++++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999888764 599999999999998877665444 4799999998763
No 223
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.74 E-value=0.00014 Score=74.08 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=67.7
Q ss_pred hhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccE
Q 006149 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 60 ~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDv 137 (659)
++.....++.+.|||+|.|||.+|..|.+.|. +|+++++.+.|+....++..... ...+++.+|+...++| .||+
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccce
Confidence 33333347899999999999999999999986 99999999999999988875443 5689999999998755 6999
Q ss_pred EEeccccc
Q 006149 138 ILDKGGLD 145 (659)
Q Consensus 138 Vi~~g~l~ 145 (659)
++++-...
T Consensus 127 cVsNlPyq 134 (315)
T KOG0820|consen 127 CVSNLPYQ 134 (315)
T ss_pred eeccCCcc
Confidence 99764433
No 224
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.73 E-value=8.8e-05 Score=78.13 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=67.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
+.+...+.+.+.. .++..+||.+||+|..+..+++.. ...|+|+|.++.+++.++++... ..+++++++|+.++
T Consensus 5 pVll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l 80 (296)
T PRK00050 5 PVLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNL 80 (296)
T ss_pred cccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHH
Confidence 3444455566653 577899999999999999999873 36899999999999999877755 56899999999886
Q ss_pred C--CCCC--cccEEEec
Q 006149 129 Q--FMDE--TFDVILDK 141 (659)
Q Consensus 129 ~--~~~~--sFDvVi~~ 141 (659)
. .+.+ ++|.|+..
T Consensus 81 ~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 81 KEVLAEGLGKVDGILLD 97 (296)
T ss_pred HHHHHcCCCccCEEEEC
Confidence 3 1222 78988854
No 225
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.0008 Score=65.85 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l- 128 (659)
..++.+..++... --.+.++||+-+|+|.++.+.+.+|...++.||.+..++..+++....-+ .++.++.+|+...
T Consensus 28 rVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 3444555555420 02578999999999999999999999999999999999988876655544 6788889998843
Q ss_pred -CCCC-CcccEEEecccccccCCcccchHHHHHHHHH--HHhccccCeEEEEEEcCC
Q 006149 129 -QFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSE--VKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 129 -~~~~-~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~e--i~rvLkpGG~lvi~~~~~ 181 (659)
.... +.||+|+.-..+..-.- .....+.. -..+|+|+|.++|-...+
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~------~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLL------DKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchh------hHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2222 24999996554441100 01233333 558899999999987654
No 226
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.67 E-value=0.00013 Score=71.67 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=74.9
Q ss_pred eEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCCCCCcccEEEecccccccC
Q 006149 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+++|+|+|.|.=+..|+-. +..+++.+|....=+..++.....- -.++++++..+.+ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 8999999999988888765 4468999999987666555444332 3679999999998 44568999999876543
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...++.-+.++|++||++++.--
T Consensus 127 --------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 --------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 34889999999999999998864
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00048 Score=74.21 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCC---------------------------------C-------
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------H------- 92 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~---------------------------------~------- 92 (659)
+...++.+... .++..++|.-||+|.+..+.|-.+. +
T Consensus 179 LAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 179 LAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 33344444444 4557999999999999988776541 1
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCcccEEEecccccc-cCCcccchHHHHHHHHHHHhccc
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDA-LMEPELGHKLGNQYLSEVKRLLK 169 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~-l~~~~~~~~~~~~~l~ei~rvLk 169 (659)
.++|+|+++.+|+.|+..+...+ ..|+|.++|+.+++-+-+.+|+|+++....- +.+......+...+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 37799999999998877665555 5699999999998644478999999865542 22222122346677778888888
Q ss_pred cCeEEEEEEc
Q 006149 170 SGGKFVCLTL 179 (659)
Q Consensus 170 pGG~lvi~~~ 179 (659)
.-+++++++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8889998885
No 228
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.61 E-value=0.00042 Score=72.59 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeec
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDM 125 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~--~~~D~ 125 (659)
|..+...|.++-...+...+.+|||+|||+|..+..+.+. ...+++++|.|+.|++.++... ...+.... ...+.
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~-~~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL-RAGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH-hcccccccchhhhhh
Confidence 4445555555543322245679999999999876555443 3568999999999998665544 33322111 11111
Q ss_pred CCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 126 ~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
.....+....|+|++.++|..+.+.. +..+++.+.+.+.+ .+++++.+.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~-----r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAA-----RAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchH-----HHHHHHHHHHhccC--cEEEEcCCChH
Confidence 11111122349999999999987622 67888888777766 99999987554
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.60 E-value=0.00065 Score=70.71 Aligned_cols=105 Identities=14% Similarity=0.231 Sum_probs=77.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (659)
+.++..+.+.+.. .++..|||+|+|.|.+|..|++.+ .+++++|+++.+++.++++.. ..++++++.+|+.+++.
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhcccc
Confidence 4566667777764 478999999999999999999998 699999999999988876654 56889999999999876
Q ss_pred CC---CcccEEEecccccccCCcccchHHHHHHHHHHHhcccc
Q 006149 131 MD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (659)
Q Consensus 131 ~~---~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp 170 (659)
.. .....|+++-.. ++ -..++..+...-+.
T Consensus 91 ~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYRF 123 (262)
T ss_dssp GGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGGG
T ss_pred HHhhcCCceEEEEEecc-cc---------hHHHHHHHhhcccc
Confidence 54 344566655433 22 23566666663333
No 230
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00051 Score=73.50 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=92.7
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (659)
-+..+.+... ++.+|||+-||-|.++..++..|...|+++|+++.+++.+++....++ ..+..+++|......
T Consensus 178 ER~Rva~~v~-----~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVK-----EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhc-----CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh
Confidence 3445556553 589999999999999999999987669999999999998877665554 348899999999875
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
.-+.||-|++...-. ...++....+.+++||.+-+-+..++..
T Consensus 253 ~~~~aDrIim~~p~~-----------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 253 ELGVADRIIMGLPKS-----------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccccCCEEEeCCCCc-----------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 558899999754433 2378889999999999999888875543
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.55 E-value=0.001 Score=66.53 Aligned_cols=125 Identities=20% Similarity=0.305 Sum_probs=86.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 46 wy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
|......+...+..-+...+..++.+||-+|..+|....++++. | .+.|++|++|+.....+.. .++.++|+-.+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-HhccCCceeeeec
Confidence 55555566666666666555678999999999999999999987 5 4689999999988877754 4467789999999
Q ss_pred ecCCCC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 124 D~~~l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.... .--+..|+|++.= ..+ ...+-+..++...||+||.+++..-+
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DV-----aQp----~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDV-----AQP----DQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE------SST----THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cCCChHHhhcccccccEEEecC-----CCh----HHHHHHHHHHHhhccCCcEEEEEEec
Confidence 998742 1235899998531 111 23678888999999999999987643
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.55 E-value=0.00026 Score=77.18 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCcccEEEecccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDvVi~~g~l 144 (659)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.+++...... .++.+.++|+..+- .....||+|....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 358999999999999999887 66799999999999998876654443 35889999988752 1235799998533
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
...+. .++..+.+.+++||.+++..
T Consensus 123 --fGs~~-------~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 --FGTPA-------PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred --CCCcH-------HHHHHHHHhcccCCEEEEEe
Confidence 22222 78999999999999988874
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.53 E-value=0.00066 Score=70.68 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=77.4
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHH-HHHc-CC-CeEEEEcCCHHHHHHHHHHhhcC---C
Q 006149 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYDA-GF-HGITNVDFSKVVISDMLRRNVRD---R 115 (659)
Q Consensus 42 ~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~-La~~-g~-~~VtgvD~S~~~i~~~~~~~~~~---~ 115 (659)
..|.+|..|..+...=...+.......+.+|+=||||.=-+|.. |++. +. ..|+++|+++.+++.+++-.... .
T Consensus 94 ~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~ 173 (276)
T PF03059_consen 94 ESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS 173 (276)
T ss_dssp HTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-
T ss_pred hcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc
Confidence 34667777777766444445431112345999999998777644 4443 32 47999999999999876654422 3
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+++|+++|..+.+.+-..||+|+.......-..+ -.+++.++.+.++||..+++-+.
T Consensus 174 ~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 174 KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SSEEEEES-GGGG-GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CCeEEEecchhccccccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEecc
Confidence 67999999998876555789999965544421112 46999999999999999988754
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.44 E-value=0.00097 Score=66.95 Aligned_cols=100 Identities=17% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+.+++|||.|.|.=+..|+-. ...+||-+|....=+...+....+-+ ++++++++-++++.-....||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 589999999999998888733 33469999988766665544443333 679999999999753211199999875443
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+..++.-+..++++||.++..-.
T Consensus 147 ----------L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 147 ----------LNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred ----------hHHHHHHHHHhcccCCcchhhhH
Confidence 34788889999999999865443
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.43 E-value=0.0022 Score=64.30 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=85.2
Q ss_pred EEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCc-ccEEEeccccccc
Q 006149 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDET-FDVILDKGGLDAL 147 (659)
Q Consensus 72 ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~s-FDvVi~~g~l~~l 147 (659)
|.||||.-|.++..|.+.|. ..++++|+++..++.+++.....+ .++.+.++|-.+. ++.+. .|.|+..|+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 68999999999999999976 569999999999999988776655 5799999997652 33343 7999877755443
Q ss_pred CCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
+...|++....++....|++........++..+. ..+|.+.-..+-..
T Consensus 80 ---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~--~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 80 ---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLY--ENGFEIIDEDLVEE 127 (205)
T ss_dssp ---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHH--HTTEEEEEEEEEEE
T ss_pred ---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHH--HCCCEEEEeEEEeE
Confidence 5688888888888777888887765544333322 34788776666443
No 236
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.43 E-value=0.00038 Score=69.30 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~l~ 145 (659)
..++|||||=+...... ..+.-+|+.||+++ ..-.+.+.|+.+.|.| +++||+|.+.-+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns--------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS--------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC--------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 47999999965543322 23434799999987 1224578888888764 67999999999999
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeE-----EEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~-----lvi~~~~ 180 (659)
+++++. .+-.++..++++|+|+|. ++++.+.
T Consensus 116 fVP~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 998765 378999999999999999 7777654
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.41 E-value=0.00098 Score=72.37 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
+...+.+++.. .+ .+|||+-||.|.++..|++.. .+|+|||+++.+++.|++.+..++ .+++|+++++.++
T Consensus 185 l~~~~~~~l~~---~~-~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 185 LYEQALEWLDL---SK-GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHCTT----T-TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHhhc---CC-CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 33445566654 33 389999999999999998875 499999999999998877665554 7899999887553
No 238
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00058 Score=75.79 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=65.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCC-
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFM- 131 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~- 131 (659)
.....+++.. .++.++||+=||.|.++..|++... +|+|+|+++.+++.|++.++.++ .|++|..+|+.++...
T Consensus 282 ~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 282 YETALEWLEL---AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHhh---cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 3345555554 5678999999999999999997754 99999999999998877665554 5799999999987422
Q ss_pred --CCcccEEEe
Q 006149 132 --DETFDVILD 140 (659)
Q Consensus 132 --~~sFDvVi~ 140 (659)
...||+|+.
T Consensus 358 ~~~~~~d~Vvv 368 (432)
T COG2265 358 WEGYKPDVVVV 368 (432)
T ss_pred cccCCCCEEEE
Confidence 357899984
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.002 Score=69.99 Aligned_cols=115 Identities=23% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCC---CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEE
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~---~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
+.++.+|||+.++.|.=|.+++.... ..|+++|.++.-+..+.++..+-+ .++...+.|...++ ...+.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37899999999999999999988732 246999999999988877776555 45788888877653 222359999
Q ss_pred Ee------cccccccCCc------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LD------KGGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~------~g~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+. .|++.--++. .+- ...-.++|....++|||||+++.+|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 94 3334211110 000 012678999999999999999999976
No 240
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.39 E-value=0.0012 Score=75.71 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=81.3
Q ss_pred cchhHHHHHHHHhhCCCCC----CCCCeEEEECCCcchHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHHhhcC
Q 006149 48 AEWPQLRDPLISLIGAPTS----SPPPQILVPGCGNSRLSEHLYDAG---------FHGITNVDFSKVVISDMLRRNVRD 114 (659)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~----~~~~~ILDiGCG~G~~s~~La~~g---------~~~VtgvD~S~~~i~~~~~~~~~~ 114 (659)
.....+...+.+++..... ....+|||+|||+|.+...+++.. ..+++|+|+++.++..++......
T Consensus 7 yTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred CCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 3345566666665532100 134699999999999998777641 147899999999998776654332
Q ss_pred C-CCcEEEEeecCCCC-----CCCCcccEEEecccccccCCcccch----------------------------------
Q 006149 115 R-SDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPELGH---------------------------------- 154 (659)
Q Consensus 115 ~-~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~~~---------------------------------- 154 (659)
. ..+...+.|..... -..+.||+|+.+...--+.......
T Consensus 87 ~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (524)
T TIGR02987 87 ALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRK 166 (524)
T ss_pred CCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcc
Confidence 2 23445555533221 1125799999876655332110000
Q ss_pred -----HHHHHHH-HHHHhccccCeEEEEEEcC
Q 006149 155 -----KLGNQYL-SEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 155 -----~~~~~~l-~ei~rvLkpGG~lvi~~~~ 180 (659)
.....++ ..+.++|++||++.++...
T Consensus 167 ~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~ 198 (524)
T TIGR02987 167 YAGVGTEYSRVFEEISLEIANKNGYVSIISPA 198 (524)
T ss_pred cCCcccHHHHHHHHHHHHhcCCCCEEEEEECh
Confidence 0111234 5678999999999998864
No 241
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0013 Score=67.11 Aligned_cols=112 Identities=17% Similarity=0.284 Sum_probs=87.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC
Q 006149 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (659)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~ 129 (659)
...+..+|.. .|+.+|||-|.|+|.++..+++. .-++++..|+.+.-.+++++.++..+ .++++..-|+....
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 4456777766 79999999999999999999886 34789999999998888888887665 68999999998876
Q ss_pred CC--CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCe-EEEEEEcC
Q 006149 130 FM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLA 180 (659)
Q Consensus 130 ~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG-~lvi~~~~ 180 (659)
|. +..+|.|+ ||- +.+. .++..+..+||.+| ++++.+.+
T Consensus 171 F~~ks~~aDaVF----LDl-PaPw-------~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 171 FLIKSLKADAVF----LDL-PAPW-------EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred ccccccccceEE----EcC-CChh-------hhhhhhHHHhhhcCceEEeccHH
Confidence 54 46788887 343 3333 56777777999866 67776655
No 242
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0012 Score=64.73 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=94.0
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 006149 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (659)
Q Consensus 45 ewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~ 123 (659)
+|......+...+++=+...+..++.+||=+|+.+|....++++. |.+.|++|++|+.+...+...+ ..++|+--+..
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL~ 131 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPILE 131 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeeec
Confidence 466666667777777666566788999999999999999999987 6568999999998888776655 56789999999
Q ss_pred ecCCCC---CCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 124 DMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 124 D~~~l~---~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
|+.... .--+..|+|+.- +. .+...+-+..++...||+||++++.-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~D-----VA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQD-----VA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccCCcHHhhhhcccccEEEEe-----cC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 998742 112457888731 11 22236778899999999999877654
No 243
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.35 E-value=0.0021 Score=76.01 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=81.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc------C-----------------------------------
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA------G----------------------------------- 90 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~------g----------------------------------- 90 (659)
.+...++.+... ..++..++|.+||+|.+..+.+.. |
T Consensus 176 tlAaa~l~~a~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 176 NLAAAILLRSGW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred HHHHHHHHHcCC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 444444444332 125689999999999998776542 0
Q ss_pred --CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCC--CCcccEEEecccccccCCcccchHHHHHHHHHH
Q 006149 91 --FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (659)
Q Consensus 91 --~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~--~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei 164 (659)
...++|+|+++.+++.+++.....+ ..+.+.++|+.+++.+ .++||+|+++..+..-..... ....+...+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~---~l~~lY~~l 330 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP---ALIALYSQL 330 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH---HHHHHHHHH
Confidence 1259999999999998877665544 3589999999988643 357999999866543322111 123333333
Q ss_pred ---HhccccCeEEEEEEcC
Q 006149 165 ---KRLLKSGGKFVCLTLA 180 (659)
Q Consensus 165 ---~rvLkpGG~lvi~~~~ 180 (659)
.+...+|+.+++++..
T Consensus 331 g~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 331 GRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHhCCCCeEEEEeCC
Confidence 3333489999888754
No 244
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.32 E-value=5.3e-05 Score=74.00 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l 147 (659)
.+.++||+|+|+|..+..++.. +.+|.+.+.|..|+.+.+++. -++ ....+-.-.+-+||+|.|-..|+-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~----ynV----l~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN----YNV----LTEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC----Cce----eeehhhhhcCceeehHHHHHHHHhh
Confidence 4579999999999999998765 568999999998888765443 221 1111111123469999999999987
Q ss_pred CCcccchHHHHHHHHHHHhcccc-CeEEEEEEc
Q 006149 148 MEPELGHKLGNQYLSEVKRLLKS-GGKFVCLTL 179 (659)
Q Consensus 148 ~~~~~~~~~~~~~l~ei~rvLkp-GG~lvi~~~ 179 (659)
.++- ++|+.++.+|+| +|+.++.-.
T Consensus 183 ~~p~-------kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 183 FDPF-------KLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred cChH-------HHHHHHHHHhccCCCcEEEEEE
Confidence 7665 999999999999 888776543
No 245
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.28 E-value=0.0007 Score=67.77 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=62.0
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhh-------c---CCCCcEEEEeecCCCCCCC---
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R---DRSDMRWRVMDMTSMQFMD--- 132 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~-------~---~~~~i~~~~~D~~~l~~~~--- 132 (659)
.+++..+|+|||.|......+-. ++...+||++.+...+.+..... . ...++.+..+|+.+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 67899999999999998777644 77779999999987765543211 1 1246788888987754211
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
..-|+|+++.+.. +++ ....|.+...-||+|.++|..
T Consensus 121 s~AdvVf~Nn~~F---~~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 121 SDADVVFVNNTCF---DPD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp HC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred cCCCEEEEecccc---CHH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 3469999987653 222 446667888889999887654
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00084 Score=65.53 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHhhCC-CCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcc
Q 006149 57 LISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (659)
Q Consensus 57 l~~~l~~-~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (659)
+.+++.. +..-.+.+|||+|.|+|.-+...+..|...|++.|+.+-.+....-..+.++-.+.+...|..- ++..|
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~ 143 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAF 143 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcce
Confidence 3444433 2234578999999999999999999998899999999776665544444455678888888766 36789
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeE-EEEEEcCCchhhcc
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK-FVCLTLAESHVLGL 187 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~-lvi~~~~~~~~~~~ 187 (659)
|+|+....++.-.. ..+++. |.+.|+..|. +++-+...+++.+.
T Consensus 144 Dl~LagDlfy~~~~-------a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk~ 188 (218)
T COG3897 144 DLLLAGDLFYNHTE-------ADRLIP-WKDRLAEAGAAVLVGDPGRAYLPKK 188 (218)
T ss_pred eEEEeeceecCchH-------HHHHHH-HHHHHHhCCCEEEEeCCCCCCCchh
Confidence 99999888775322 447777 7777776665 45555555554443
No 247
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.23 E-value=0.0024 Score=63.98 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC------CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM------QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l------~~~~~sFDv 137 (659)
.+.+.||||.=||..+..+|.. .-+.|+++|+++...+...+.....+ ..|++++++..+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4689999998888777766655 23689999999998887755544333 6799999987653 245689999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++ +|+.. .....++.++.+++|+||++++-.
T Consensus 153 aF----vDadK------~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AF----VDADK------DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----Eccch------HHHHHHHHHHHhhcccccEEEEec
Confidence 98 34322 234589999999999999998865
No 248
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.18 E-value=0.0033 Score=59.07 Aligned_cols=99 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchHHHHHHH-----cCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCCCCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~-----~g~~~VtgvD~S~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~~~~~sFDv 137 (659)
.+...|+|+|||.|.++..|+. ....+|++||.++..++.+.++..... .++.+..+++.+.+. ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 433589999999999988877765433 356666666655432 456778
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++ .||...+.. ..+++.+.+ ++-.++++.
T Consensus 103 ~v---gLHaCG~Ls------~~~l~~~~~---~~~~~l~~v 131 (141)
T PF13679_consen 103 LV---GLHACGDLS------DRALRLFIR---PNARFLVLV 131 (141)
T ss_pred EE---EeecccchH------HHHHHHHHH---cCCCEEEEc
Confidence 87 455554432 355555555 555555443
No 249
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.17 E-value=0.0033 Score=62.12 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----
Q 006149 517 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ---- 589 (659)
Q Consensus 517 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~---- 589 (659)
-|++.|+..+.+.+. + +.+.+||-||.|.|.++..+.+..|..+|++||+++.+++.|++.. ++..
T Consensus 28 ~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 577777766655432 1 2357999999999999999998889999999999999999998754 3210
Q ss_pred ---------CCCeeEE-eccc--chhHHHHHHHhhccCCCCcEEEecCchHHHHHHHhhcc
Q 006149 590 ---------DKSLKVF-NHLF--CLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 590 ---------d~rl~vf-~~l~--~~~f~~~~~~~Lf~~~~~g~~~~n~~~~~~~~l~~~~~ 638 (659)
+.+.|+. ..-+ -..+.+.+.+.| +++|.++.-..+.....+..+.+
T Consensus 101 ~~d~~~~~~~~~fDlV~~~~~~~~~~~l~~~~~~L---kpGG~lv~~~~~~~~~~l~~~~~ 158 (187)
T PRK00107 101 HGRAEEFGQEEKFDVVTSRAVASLSDLVELCLPLL---KPGGRFLALKGRDPEEEIAELPK 158 (187)
T ss_pred eccHhhCCCCCCccEEEEccccCHHHHHHHHHHhc---CCCeEEEEEeCCChHHHHHHHHH
Confidence 1122222 1111 247888899999 99998876544433334444433
No 250
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.11 E-value=0.0027 Score=66.80 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCcccEEEe-
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILD- 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDvVi~- 140 (659)
.++..|||+.+|.|.-+..+++. +.+.|++.|+++.-+..+..+..+.+ .++.....|..... .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999989886 24789999999999998877765544 56777778887761 23346999994
Q ss_pred ---c--ccccccCC------cccch---HHHHHHHHHHHhcc----ccCeEEEEEEcC
Q 006149 141 ---K--GGLDALME------PELGH---KLGNQYLSEVKRLL----KSGGKFVCLTLA 180 (659)
Q Consensus 141 ---~--g~l~~l~~------~~~~~---~~~~~~l~ei~rvL----kpGG~lvi~~~~ 180 (659)
. |++..-++ +++.. ..-.++|..+.+.+ ||||+++-+|.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2 22322111 00000 12678999999999 999999999976
No 251
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0049 Score=59.78 Aligned_cols=106 Identities=20% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecCCCC--------CCCCcc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ--------FMDETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~-D~~~l~--------~~~~sF 135 (659)
.|+++|||+||..|.++....+. +.+-|.|||+-. ....+.+.++++ |+++.. .++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57899999999999999887776 336799999754 122345666666 777642 567889
Q ss_pred cEEEecccccccCCc----ccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 136 DVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 136 DvVi~~g~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
|+|++-..-.+.... .....+-..++--....++|+|.|+|-.+...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 999975433222111 10011233445555677899999999888643
No 252
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.06 E-value=0.0042 Score=55.89 Aligned_cols=81 Identities=20% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C---------CCeeEE-ec--c-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D---------KSLKVF-NH--L- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d---------~rl~vf-~~--l- 599 (659)
..+||-||.|.|.++..+.+.+|..++++||+++..++.|++++ ++.. | ++.|+. .. .
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 35899999999999999999999889999999999999998775 3321 0 011111 00 0
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
...++.+.+.+.| +++|.++.+.
T Consensus 100 ~~~~~l~~~~~~L---k~gG~li~~~ 122 (124)
T TIGR02469 100 LLQEILEAIWRRL---RPGGRIVLNA 122 (124)
T ss_pred hHHHHHHHHHHHc---CCCCEEEEEe
Confidence 1235777888888 8888877653
No 253
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.03 E-value=0.0023 Score=68.15 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.++||+||++|.++..|.+.|. .|++||..+ |.... ...++|.....|......+.+.+|+++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 4789999999999999999999997 999999765 33333 3457899998888776433678999987543
No 254
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.91 E-value=0.0015 Score=62.88 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=49.0
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCC--CCCCc-ccEEEec
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ--FMDET-FDVILDK 141 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~--~~~~s-FDvVi~~ 141 (659)
.|+|+.||-|..+..+|+.. .+|++||+++..++.+ +.+++-. .++.++++|+.++. +.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a-~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECA-KHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHH-HHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHH-HHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 79999999999999999985 4899999999999866 4444433 58999999998862 22222 8999964
No 255
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0044 Score=61.35 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l 144 (659)
.++.+||++|-|-|.....+.+.....=+-|+.++.++++|+...-....++..+.+-..+. .++++.||-|+---.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 36899999999999998888777655667899999999999876655667787777655543 4678999999832111
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+. .....+.+.+.|+|||+|+|-....
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEecC
Confidence 111 1266888899999999999865543
No 256
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.88 E-value=0.0031 Score=56.51 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=59.3
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE---------------------e--c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF---------------------N--H 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf---------------------~--~ 598 (659)
.+||-+|.|.|++...+.+.. ..++++|||||..+++|++.+.... ++|++++ + +
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 489999999999999999998 7799999999999999999886542 3345333 0 0
Q ss_pred -----------ccchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 -----------LFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 -----------l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
-....|.+.+.+.| +++|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L---~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLL---KPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHc---CCCeEEEE
Confidence 12356777888888 88887754
No 257
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.85 E-value=0.0067 Score=62.68 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---------CCCCCCCeeEE------eccc-chh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---------GFTQDKSLKVF------NHLF-CLQ 603 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---------gl~~d~rl~vf------~~l~-~~~ 603 (659)
..+.+||=||.|.|.++..+...+|+.++++||++|.+++.|++.. .+..+...|+. .++- ...
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~~ 107 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHAD 107 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHHH
Confidence 3457999999999999999999999899999999999999998741 01122334433 2332 356
Q ss_pred HHHHHHHhhccCCCCcEEEecC
Q 006149 604 LEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+...+.++| +|+|.++.+.
T Consensus 108 ~l~~~~~~L---kpgG~l~~~~ 126 (255)
T PRK14103 108 LLVRWVDEL---APGSWIAVQV 126 (255)
T ss_pred HHHHHHHhC---CCCcEEEEEc
Confidence 778899999 9999988754
No 258
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.82 E-value=0.003 Score=63.34 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=62.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeE--------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------- 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------- 595 (659)
-+|++||-||-|.|--+.++....| +.+|+.||+||+..++|+++| |+ +.|+++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCCCc
Confidence 3578999999999999999998887 589999999999999999999 44 234422
Q ss_pred Eecc-------cchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 596 FNHL-------FCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 596 f~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
|+-+ .-..+++.+...| +++|++++ |.
T Consensus 122 fD~VFiDa~K~~y~~y~~~~~~ll---~~ggvii~DN~ 156 (205)
T PF01596_consen 122 FDFVFIDADKRNYLEYFEKALPLL---RPGGVIIADNV 156 (205)
T ss_dssp EEEEEEESTGGGHHHHHHHHHHHE---EEEEEEEEETT
T ss_pred eeEEEEcccccchhhHHHHHhhhc---cCCeEEEEccc
Confidence 2222 2345677788888 99998766 55
No 259
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.81 E-value=0.0091 Score=61.65 Aligned_cols=82 Identities=20% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------CCCCeeEE------ecc-cch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------QDKSLKVF------NHL-FCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------~d~rl~vf------~~l-~~~ 602 (659)
...+||=||.|.|.+...+...+|..++++||+++.+++.|++.+.-. .++..|+. .++ ...
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~ 110 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWLPDHL 110 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhCCCHH
Confidence 457999999999999999999999889999999999999999886311 11233333 233 245
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+.+.++| +++|.++...
T Consensus 111 ~~l~~~~~~L---kpgG~~~~~~ 130 (258)
T PRK01683 111 ELFPRLVSLL---APGGVLAVQM 130 (258)
T ss_pred HHHHHHHHhc---CCCcEEEEEC
Confidence 7888999999 9999888754
No 260
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.77 E-value=0.0081 Score=59.01 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=61.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C------CCeeEE--ec--ccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D------KSLKVF--NH--LFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d------~rl~vf--~~--l~~ 601 (659)
...+||=||.|.|.++..+.+.+|+.++++||++|.+++.|++.+ ++.. | .+.|+. .. -..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~~~ 110 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGGNL 110 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCccCH
Confidence 456899999999999999999999899999999999999998754 3321 0 112221 11 113
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.++.+.+.+.| +++|.++.+.
T Consensus 111 ~~~l~~~~~~L---k~gG~lv~~~ 131 (187)
T PRK08287 111 TAIIDWSLAHL---HPGGRLVLTF 131 (187)
T ss_pred HHHHHHHHHhc---CCCeEEEEEE
Confidence 45777888899 9999988765
No 261
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.77 E-value=0.0097 Score=61.30 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=59.1
Q ss_pred CCCeEEEEccCcchHHHHHHh--hCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~--~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf------ 596 (659)
...+||-||.|.|.+...+.. ..|+.++++||++|.+++.|++.+.-. ...++ |+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 346899999999999888877 468899999999999999999876321 11122 211
Q ss_pred eccc---chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHLF---CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l~---~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++- -..+++.+.++| +|+|.++.
T Consensus 136 ~~l~~~~~~~~l~~i~~~L---kpGG~l~l 162 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGL---NPGGALVL 162 (247)
T ss_pred HhCCHHHHHHHHHHHHHhc---CCCCEEEE
Confidence 1221 146788999999 99998755
No 262
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.75 E-value=0.0058 Score=51.90 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=55.4
Q ss_pred EEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-cchhH
Q 006149 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL-FCLQL 604 (659)
Q Consensus 546 LiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l-~~~~f 604 (659)
|-||.|.|.....|..+ +..+++++|+++.+++.|++.+.-. ++...|+. .|+ .-..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 56999999999999999 7789999999999999999987432 12222332 344 34567
Q ss_pred HHHHHHhhccCCCCcEEEe
Q 006149 605 EEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 605 ~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+.++++| +|+|.+++
T Consensus 80 l~e~~rvL---k~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVL---KPGGRLVI 95 (95)
T ss_dssp HHHHHHHE---EEEEEEEE
T ss_pred HHHHHHHc---CcCeEEeC
Confidence 78999999 99998763
No 263
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.73 E-value=0.0076 Score=60.76 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCCeeEE---------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVF--------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl~vf--------------------- 596 (659)
..+++||-||-+.|--+.++....| +.+++.||+||+.+++|+++|.-. -++++.++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4679999999999999999999999 889999999999999999999322 13333211
Q ss_pred ---ecccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 ---NHLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 ---~~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+.-...+|++.+-..| +++|+++. |.
T Consensus 138 IDadK~~yp~~le~~~~lL---r~GGliv~DNv 167 (219)
T COG4122 138 IDADKADYPEYLERALPLL---RPGGLIVADNV 167 (219)
T ss_pred EeCChhhCHHHHHHHHHHh---CCCcEEEEeec
Confidence 1234678999999999 99998876 55
No 264
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.68 E-value=0.011 Score=60.45 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC--CCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~--p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf------ 596 (659)
...+||-||.|.|.+...+...+ |+.++++||+++.+++.|++.+.-. ...++ ++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 44689999999999999888764 7899999999999999999875321 11122 211
Q ss_pred eccc---chhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHLF---CLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l~---~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++. -..+++.++++| +|+|.+...
T Consensus 133 ~~~~~~~~~~~l~~i~~~L---kpgG~l~i~ 160 (239)
T TIGR00740 133 QFLPPEDRIALLTKIYEGL---NPNGVLVLS 160 (239)
T ss_pred hhCCHHHHHHHHHHHHHhc---CCCeEEEEe
Confidence 1221 256788999999 999987663
No 265
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.67 E-value=0.013 Score=57.49 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=58.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-------------CCCeeEE--ecc-cch
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-------------DKSLKVF--NHL-FCL 602 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-------------d~rl~vf--~~l-~~~ 602 (659)
..+||=||.|.|.+...+....|..++++||+++.+++.|++.. ++.. +...|+. ..+ .-.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 47999999999999999988888889999999999998887653 4421 1122222 111 123
Q ss_pred hHHHHHHHhhccCCCCcEEEecC
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+++.+.++| +++|.++.-.
T Consensus 123 ~~~~~~~~~L---kpgG~lvi~~ 142 (181)
T TIGR00138 123 VLLELTLNLL---KVGGYFLAYK 142 (181)
T ss_pred HHHHHHHHhc---CCCCEEEEEc
Confidence 5667788888 9999887644
No 266
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.64 E-value=0.0031 Score=61.07 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=74.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
..+.+.|+|+|+|.++...+.. ..+|++|+..+...+.+.+...- ...++.++.+|+.+..| +.-|+|+|...=-+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 3479999999999999887776 45899999999776655333222 23679999999999888 46799998654334
Q ss_pred cCCcccchHHHHHHHHHHHhccccCeEEE
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpGG~lv 175 (659)
+.... ....++.+...||.++.++
T Consensus 109 Li~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LIEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhccc-----ccHHHHHHHHHhhcCCccc
Confidence 44433 3477888888999888876
No 267
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.64 E-value=0.01 Score=59.82 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC------------C-CCCCeeEE------ecc-
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------T-QDKSLKVF------NHL- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl------------~-~d~rl~vf------~~l- 599 (659)
..+.+||-||.|.|.+..++...+|..++++||+++.+++.|++.++- + .++..|+. .++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 345789999999999999999999999999999999999999988641 0 12233433 122
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.++++| +++|.+....
T Consensus 113 ~~~~~l~~~~~~L---~~~G~l~~~~ 135 (240)
T TIGR02072 113 DLSQALSELARVL---KPGGLLAFST 135 (240)
T ss_pred CHHHHHHHHHHHc---CCCcEEEEEe
Confidence 3456888999999 9999888755
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.63 E-value=0.011 Score=61.09 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcc--hHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCC-----------C
Q 006149 68 PPPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ-----------F 130 (659)
Q Consensus 68 ~~~~ILDiGCG~G--~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~-----------~ 130 (659)
.-...||||||-= ....++++. ...+|+-||+.+.++..++.... ..++ ..++++|+.+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~-~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA-DNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT-T-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc-CCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 3468999999953 345556554 45799999999999987766654 3345 889999998842 1
Q ss_pred CCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCc
Q 006149 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~ 182 (659)
.-...=.|+..++|+++.+.++ ...++..++..|.||.+++++..+.+
T Consensus 147 D~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1122236778899999977543 57999999999999999999987744
No 269
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.63 E-value=0.0011 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.099 Sum_probs=43.3
Q ss_pred EEECCCcchHHHHHHHc----CCCeEEEEcCCHH---HHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCcccEEEeccc
Q 006149 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (659)
Q Consensus 73 LDiGCG~G~~s~~La~~----g~~~VtgvD~S~~---~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~ 143 (659)
||+||..|..+..+++. +..+++++|..+. .-+.+ ++ .....+++++.+|..+. .++.++||+|+.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~-~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEII-KK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhh-hh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988887764 2237999999994 22222 11 12235799999998764 344578999996542
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
-. .......+..+.+.|+|||++++-+
T Consensus 79 H~--------~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--------YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1226688999999999999998764
No 270
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.59 E-value=0.0081 Score=60.83 Aligned_cols=99 Identities=10% Similarity=0.134 Sum_probs=73.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CC-CCeeEE------ecc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QD-KSLKVF------NHL 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d-~rl~vf------~~l 599 (659)
..+||=||-|||.|+.-+.+.. .+|+++|+++..+++|+.|= |+. .+ .+.||. +|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4799999999999999999986 79999999999999999775 222 11 244544 787
Q ss_pred c-chhHHHHHHHhhccCCCCcEEEecCc---hH----HHHHHHhhcc-CCccccc
Q 006149 600 F-CLQLEEDVNLVLFGLSSESCIKDNSF---PE----AAVQLGKLVK-FQHLEIS 645 (659)
Q Consensus 600 ~-~~~f~~~~~~~Lf~~~~~g~~~~n~~---~~----~~~~l~~~~~-f~~~~~~ 645 (659)
- -..|...|...+ +|+|++..-.. .. +....+.+++ +|...|-
T Consensus 138 ~dp~~~~~~c~~lv---kP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~ 189 (243)
T COG2227 138 PDPESFLRACAKLV---KPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHD 189 (243)
T ss_pred CCHHHHHHHHHHHc---CCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchh
Confidence 4 556899999999 99999977442 22 2224566666 6655553
No 271
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.0081 Score=62.69 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHh-h-cC---------------------------CC--
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-V-RD---------------------------RS-- 116 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~-~-~~---------------------------~~-- 116 (659)
...+||..|||.|+++..|+..|+ .+-|=++|--|+-.-.=.. . .. .|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 467999999999999999999998 6777788776653111000 0 00 00
Q ss_pred ----------CcEEEEeecCCC---CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 117 ----------DMRWRVMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 117 ----------~i~~~~~D~~~l---~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.+....+|+.+. +-..++||+|+....+|.-. ++-.+++.+..+|||||+.+=..+.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-------NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-------NILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-------HHHHHHHHHHHhccCCcEEEeccce
Confidence 112223444442 11234799999776555422 2678999999999999998865543
No 272
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.55 E-value=0.0074 Score=58.50 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC----------------CCCeeEE-e------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----------------DKSLKVF-N------ 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~----------------d~rl~vf-~------ 597 (659)
...+||=||.|.|.++..+.+..|..+|++|||++..++.|++-+.... +.+.|+. .
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 4578999999999999999999999999999999999999998663221 1233432 0
Q ss_pred ----c-ccchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHHhhc
Q 006149 598 ----H-LFCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLGKLV 637 (659)
Q Consensus 598 ----~-l~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~~~~ 637 (659)
. -....|.+.+.+.| +++|.+ +.|..-.....|+++.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~L---k~~G~l~lv~~~~~~~~~~l~~~f 154 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYL---KPGGRLFLVINSHLGYERLLKELF 154 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHE---EEEEEEEEEEETTSCHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhc---cCCCEEEEEeecCCChHHHHHHhc
Confidence 0 13577888999999 999955 5555333333344443
No 273
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.53 E-value=0.0097 Score=63.17 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHH--hh---c---CCCCcEEEEeecCCC-CCCCCcccE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--NV---R---DRSDMRWRVMDMTSM-QFMDETFDV 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~--~~---~---~~~~i~~~~~D~~~l-~~~~~sFDv 137 (659)
...++|.+|.|.|....++.+.+ +.+|+-||.+|.||+.++.. .+ + ..++++++..|+.+. .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45799999999999999999985 78999999999999976521 11 1 127899999998775 233468999
Q ss_pred EEecccccccCCcccch---HHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~---~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|+.. +.++.+.. ---..+...+.+.|+++|.+++-.-+
T Consensus 369 vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 369 VIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 9842 22332211 11456778889999999999887644
No 274
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.46 E-value=0.00039 Score=60.67 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=48.3
Q ss_pred EEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCC-------------------CeeEE------ecc-
Q 006149 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDK-------------------SLKVF------NHL- 599 (659)
Q Consensus 546 LiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~-------------------rl~vf------~~l- 599 (659)
|-||.|.|.+...|...+|..++++||++|.+++.|++.+.-.... ..|+. +|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 4689999999999999999999999999999998887776322111 11211 344
Q ss_pred cchhHHHHHHHhhccCCCCcEE
Q 006149 600 FCLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
.-..+++.+++.| +|+|++
T Consensus 81 ~~~~~l~~~~~~L---~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLL---KPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT----TSS-EE
T ss_pred hHHHHHHHHHHHc---CCCCCC
Confidence 3456777888888 888875
No 275
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.45 E-value=0.02 Score=57.16 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC------C-----------CCeeEEecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------D-----------KSLKVFNHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~------d-----------~rl~vf~~l- 599 (659)
+..+||-||.|.|.+...+...+|..++++||+++.+++.|++.+ +++. | ..+|+.-..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 456899999999999999999899999999999999999998765 2210 1 111221000
Q ss_pred --------------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 600 --------------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 600 --------------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....|.+.+.++| +|+|++..-+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~L---kpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKL---KPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHc---CCCCEEEEEc
Confidence 1356889999999 9999886644
No 276
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.37 E-value=0.016 Score=61.31 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=65.6
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 006149 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (659)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (659)
..+.+...+.+++.. .++..++|.-||.|..+..+++. +.+.|+|+|.++.+++.++++......++.+++++..+
T Consensus 4 H~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 4 HQSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CcchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345566666676654 57789999999999999999876 34799999999999998877765444578888877776
Q ss_pred CC-----CCCCcccEEEe
Q 006149 128 MQ-----FMDETFDVILD 140 (659)
Q Consensus 128 l~-----~~~~sFDvVi~ 140 (659)
+. ....++|.|+.
T Consensus 81 l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILV 98 (305)
T ss_pred HHHHHHhcCCCcccEEEE
Confidence 52 12245666663
No 277
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.35 E-value=0.011 Score=55.13 Aligned_cols=58 Identities=5% Similarity=-0.082 Sum_probs=46.9
Q ss_pred eEEEECCCcchHHHHHHHcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~-~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+||+|||.|..+..++..+. .+|+++|.++.+++.+++.....+ +++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999988865 379999999999998877654433 5688888777663
No 278
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.32 E-value=0.049 Score=51.03 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=73.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCcccEEEecccccccCCcccc----hHHHHHHHHHH
Q 006149 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEV 164 (659)
Q Consensus 93 ~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDvVi~~g~l~~l~~~~~~----~~~~~~~l~ei 164 (659)
+|+|.|+-+.+|+..+++..+.+ .++++++.+=.++. .+.+++|+++-+ |.+++..+.. +..--.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999887664 46899888776663 233489988854 4444433211 12256789999
Q ss_pred HhccccCeEEEEEEcCC-ch-hhc-----chhhhh-ccCceEEEeeeCCCCCCCCCCccEEEEEEe
Q 006149 165 KRLLKSGGKFVCLTLAE-SH-VLG-----LLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 222 (659)
Q Consensus 165 ~rvLkpGG~lvi~~~~~-~~-~~~-----~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k 222 (659)
.++|+|||+++++.+.. +. ..+ .+.... ...|.+........ ..-+++.++.+|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~----~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQ----KNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCC----CCCCCEEEEEEC
Confidence 99999999999988762 21 111 222222 34677766665443 345667776654
No 279
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.26 E-value=0.023 Score=58.23 Aligned_cols=56 Identities=20% Similarity=0.314 Sum_probs=48.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeE
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKV 595 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~v 595 (659)
+...+||=||-|.|+++.+|....++++|++|||+++.++.|++=..+.. .+|+++
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v 99 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeE
Confidence 34789999999999999999999998999999999999999999876642 346633
No 280
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.25 E-value=0.021 Score=56.60 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCeeE-------------------Eec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKV-------------------FNH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~v-------------------f~~ 598 (659)
...+||=||.|.|.++..+....|..++++||+||.+++.|++.+ ++. ++++ +-.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK---NVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---CeEEEECchHHHHhhCCCCCCEEEEE
Confidence 346899999999999999988888889999999999999999764 442 1211 100
Q ss_pred --ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 --LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 --l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.....+.+.+.++| +++|.++...
T Consensus 117 ~~~~~~~~l~~~~~~L---kpgG~li~~~ 142 (196)
T PRK07402 117 GGRPIKEILQAVWQYL---KPGGRLVATA 142 (196)
T ss_pred CCcCHHHHHHHHHHhc---CCCeEEEEEe
Confidence 11247788889999 9999887765
No 281
>PLN03075 nicotianamine synthase; Provisional
Probab=96.19 E-value=0.031 Score=58.93 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=58.8
Q ss_pred CCCeEEEEccCcc--hHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC--CCCCCe-----------------eEE--e
Q 006149 541 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF--TQDKSL-----------------KVF--N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG--~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl--~~d~rl-----------------~vf--~ 597 (659)
.|++|+-||-|.| +...++..++|+.+++.+|+||+.++.||+++.- .-.+|+ |+. .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999966 3333444688999999999999999999999931 112233 221 1
Q ss_pred cc------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-| .-.+..+.+.+.| +|+|+++.-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~L---kPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHM---APGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhc---CCCcEEEEec
Confidence 11 2345567888889 9999988765
No 282
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.19 E-value=0.017 Score=59.10 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=56.4
Q ss_pred cCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe--------------eEE--ecc---
Q 006149 539 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL--------------KVF--NHL--- 599 (659)
Q Consensus 539 ~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl--------------~vf--~~l--- 599 (659)
-...++|+=||+|.|.+..-+.+.+|+++++++|+ |.|++.|++ .+|+ |++ .++
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~P~~D~~~l~~vLh~ 170 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPLPVADVYLLRHVLHD 170 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCCSSESEEEEESSGGG
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhhccccceeeehhhhh
Confidence 34557899999999999999999999999999999 999999998 3444 333 222
Q ss_pred ----cchhHHHHHHHhhccCCCC--cEEEe
Q 006149 600 ----FCLQLEEDVNLVLFGLSSE--SCIKD 623 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~--g~~~~ 623 (659)
......+.++.+| .|+ |.+.+
T Consensus 171 ~~d~~~~~iL~~~~~al---~pg~~g~llI 197 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAAL---KPGKDGRLLI 197 (241)
T ss_dssp S-HHHHHHHHHHHHHHS---EECTTEEEEE
T ss_pred cchHHHHHHHHHHHHHh---CCCCCCeEEE
Confidence 2455677888888 977 75543
No 283
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.19 E-value=0.025 Score=57.77 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||=+|.|.|.+...+...+|..++++||+++.+++.|++.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 131 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA 131 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999998764
No 284
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.13 E-value=0.027 Score=55.84 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=61.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC-----------------CCCCeeEE-ec-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT-----------------QDKSLKVF-NH- 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~-----------------~d~rl~vf-~~- 598 (659)
...++|-||-|.|.+...+...+|+.++++||+++.+++.|++.. ++. ++..++.. .+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346899999999999999999999999999999999999987642 221 01112211 10
Q ss_pred -------------ccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 -------------LFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 -------------l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+...+|.+.+.++| +++|.+...+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~L---kpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVL---KKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 22357899999999 9999886654
No 285
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.07 E-value=0.044 Score=55.47 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=57.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf------ 596 (659)
...+||=||.|.|.++..+.+.+ |..++++||++|.+++.|++-+ +++ ++...|+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 34699999999999999998775 6779999999999999998765 221 01112221
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+.+.+.++| +++|.++.
T Consensus 125 ~~~~~~~~~l~~~~~~L---k~gG~l~~ 149 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVV---KPGGKVVC 149 (231)
T ss_pred ccCCCHHHHHHHHHHHc---CcCeEEEE
Confidence 122 1245677888999 99997754
No 286
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.05 E-value=0.043 Score=59.61 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=81.7
Q ss_pred CCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCcccEE
Q 006149 65 TSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 65 ~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
.++++.+|||+.+..|.=+.++|.. +-+.|++.|.+..-+......+.+.+ .+......|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3678999999999999988877765 34579999999988877766554444 56667778887664 554 89999
Q ss_pred E----ecc--cccccCCc---c------cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 L----DKG--GLDALMEP---E------LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i----~~g--~l~~l~~~---~------~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+ |.| ++.--... . .-...-+++|.....++++||+++-+|.+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 9 344 22110000 0 00112678899999999999999998875
No 287
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.02 E-value=0.012 Score=61.69 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe--------------------eEEe
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL--------------------KVFN 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl--------------------~vf~ 597 (659)
...+||-||.|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+. +++ .+|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~~~fD~IvSi~~~E 138 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLPGKFDRIVSIEMFE 138 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG---S-SEEEEESEGG
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccCCCCCEEEEEechh
Confidence 44699999999999999999998 689999999999999998877 443 232 2336
Q ss_pred ccc---chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 598 HLF---CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 598 ~l~---~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
|+. -..|++.+++.| +|+|.+..+.+
T Consensus 139 hvg~~~~~~~f~~~~~~L---kpgG~~~lq~i 167 (273)
T PF02353_consen 139 HVGRKNYPAFFRKISRLL---KPGGRLVLQTI 167 (273)
T ss_dssp GTCGGGHHHHHHHHHHHS---ETTEEEEEEEE
T ss_pred hcChhHHHHHHHHHHHhc---CCCcEEEEEec
Confidence 773 368899999999 99999987763
No 288
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.98 E-value=0.052 Score=56.70 Aligned_cols=82 Identities=16% Similarity=0.294 Sum_probs=63.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCC---ccEEEEecChhHHHHHHhhcC-----------CC-CCCCeeEEecccchhHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFG-----------FT-QDKSLKVFNHLFCLQLE 605 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~---~~i~~VEiDp~V~~vA~~~Fg-----------l~-~d~rl~vf~~l~~~~f~ 605 (659)
...+||=||-|.|.+...|.+.+|. ..+++||+++.+++.|++-++ ++ ++...|+.-.++...+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~ 164 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKA 164 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCH
Confidence 3468999999999999999887764 378999999999999987642 11 13345655556677788
Q ss_pred HHHHHhhccCCCCcEEEecC
Q 006149 606 EDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+.++++| +|+|.++.-.
T Consensus 165 ~e~~rvL---kpgG~li~~~ 181 (272)
T PRK11088 165 EELARVV---KPGGIVITVT 181 (272)
T ss_pred HHHHhhc---cCCCEEEEEe
Confidence 8999999 9999886643
No 289
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.055 Score=54.83 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC---CCCCcccEEEecc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ---FMDETFDVILDKG 142 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~---~~~~sFDvVi~~g 142 (659)
.++..+||+|.-||.++..+.+.|...|+|+|..-..+. -+. +..+++ .+...|+..+. +. +..|++++--
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH-hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 468899999999999999999999999999999875544 222 233444 34456666553 32 3678888765
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
++-. ...+|..+..+++++|.++...-
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEec
Confidence 5554 35889999999999998877654
No 290
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.95 E-value=0.032 Score=58.08 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC---------------CCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---------------DKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---------------d~rl~vf------~~l 599 (659)
...+||=||.|.|.++..+...+ ..++++||++|.+++.|++.+.... +...|+. .|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhC
Confidence 44689999999999999887765 4699999999999999998764310 1122322 122
Q ss_pred ---cchhHHHHHHHhhccCCCCcEEEec
Q 006149 600 ---FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 ---~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
....+++.+.++| +|+|.++..
T Consensus 131 ~~~d~~~~l~~i~r~L---kPGG~lvi~ 155 (263)
T PTZ00098 131 SYADKKKLFEKCYKWL---KPNGILLIT 155 (263)
T ss_pred CHHHHHHHHHHHHHHc---CCCcEEEEE
Confidence 1245778899999 999988764
No 291
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.95 E-value=0.036 Score=55.79 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=59.5
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC---CCC-----------C---CCeeEE------ecc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQ-----------D---KSLKVF------NHL 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg---l~~-----------d---~rl~vf------~~l 599 (659)
++||-||.|.|.+...+...+|..++++||+++.+++.|++.+. +.. + ...|+. .|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999888888899999999999999998652 211 0 112222 222
Q ss_pred -cchhHHHHHHHhhccCCCCcEEEec
Q 006149 600 -FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 600 -~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
....+++.++++| +|+|.+...
T Consensus 81 ~~~~~~l~~~~~~L---kpgG~l~i~ 103 (224)
T smart00828 81 KDKMDLFSNISRHL---KDGGHLVLA 103 (224)
T ss_pred CCHHHHHHHHHHHc---CCCCEEEEE
Confidence 1357888999999 999987753
No 292
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.90 E-value=0.051 Score=54.68 Aligned_cols=82 Identities=12% Similarity=0.129 Sum_probs=56.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.++..+.+.. ++.++++||+||.+++.|++.+ |+. ++...|+. -.-..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 34689999999999999888875 4569999999999999999876 221 11122322 11112
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+..+.+.+.| +++|.++...
T Consensus 156 ~~~~~~l~~~L---kpgG~lvi~~ 176 (212)
T PRK13942 156 PDIPKPLIEQL---KDGGIMVIPV 176 (212)
T ss_pred ccchHHHHHhh---CCCcEEEEEE
Confidence 33445667778 9999877643
No 293
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.89 E-value=0.028 Score=60.29 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------------CCCCeeEE------e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------------QDKSLKVF------N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------------~d~rl~vf------~ 597 (659)
..+||=||.|+|.+...|.+. +.+|++||+++.+++.|++++... ++...|+. +
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 358999999999999988864 579999999999999999886431 11233332 5
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
|+ .-..|.+.++++| +|+|.++...
T Consensus 210 Hv~d~~~~L~~l~r~L---kPGG~liist 235 (322)
T PLN02396 210 HVANPAEFCKSLSALT---IPNGATVLST 235 (322)
T ss_pred hcCCHHHHHHHHHHHc---CCCcEEEEEE
Confidence 55 3567889999999 9999887654
No 294
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.89 E-value=0.02 Score=59.26 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=58.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCeeEE----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLKVF---- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~vf---- 596 (659)
..+.+||-||.|.|.++..+.... .++++||++|.+++.|++.. |+.. +...|+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 345799999999999999998863 68999999999999999865 2211 1122322
Q ss_pred --eccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 --NHLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 --~~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+++. ...+.+.+.++| +|+|.++.
T Consensus 121 vl~~~~~~~~~l~~~~~~L---kpgG~l~i 147 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVL---RPGGALSL 147 (255)
T ss_pred HHHhhCCHHHHHHHHHHHc---CCCeEEEE
Confidence 2232 345678899999 99998865
No 295
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.88 E-value=0.02 Score=56.40 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC--------CCCcEEEEeecCCCCCCCCcccEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQFMDETFDVI 138 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~--------~~~i~~~~~D~~~l~~~~~sFDvV 138 (659)
....+.|||||.|.+...|+.. +..-|.|.+|-..+-+..+++.... .+++.....+...+- .+-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhc
Confidence 3568999999999999999877 4467899988777766666554332 245666665554431 1111111
Q ss_pred EecccccccCCcccchH------HHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHK------LGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~------~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...-.+..++++..-.. .-..++.+..-+|++||.++.++-.
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 11111111222211000 0347889999999999999988754
No 296
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.87 E-value=0.016 Score=57.65 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC----CCCCCcccEEEe
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM----QFMDETFDVILD 140 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~D~~~l----~~~~~sFDvVi~ 140 (659)
....|+|.-||-|..+...+..+. .|++||+++.-|.-+ +.+++-. .+++|+|+|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~A-khNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACA-RHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHH-hccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 357999999999999999998876 899999999998744 5554432 5899999999875 344445667764
Q ss_pred c
Q 006149 141 K 141 (659)
Q Consensus 141 ~ 141 (659)
.
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
No 297
>PLN02244 tocopherol O-methyltransferase
Probab=95.83 E-value=0.068 Score=57.80 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC---------------CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT---------------QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------------~d~rl~vf----- 596 (659)
..+.+||=||.|.|.+...|...+ +.+|++||+++.+++.|++.. |+. ++...|+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 345789999999999999999877 569999999999999988753 221 12233332
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.|+. ...+++.++++| +|+|.++.
T Consensus 196 ~~h~~d~~~~l~e~~rvL---kpGG~lvi 221 (340)
T PLN02244 196 GEHMPDKRKFVQELARVA---APGGRIII 221 (340)
T ss_pred hhccCCHHHHHHHHHHHc---CCCcEEEE
Confidence 3432 356888999999 99998765
No 298
>PRK08317 hypothetical protein; Provisional
Probab=95.82 E-value=0.059 Score=54.15 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCC-C---------------CCCCeeEE------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGF-T---------------QDKSLKVF------ 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl-~---------------~d~rl~vf------ 596 (659)
....+||-||.|.|.+...+...+ |..++++||+++..++.|++.... . .+...|+.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 345799999999999999888877 778999999999999999886211 0 01122322
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+++.+.++| +++|.+..
T Consensus 98 ~~~~~~~~~l~~~~~~L---~~gG~l~~ 122 (241)
T PRK08317 98 QHLEDPARALAEIARVL---RPGGRVVV 122 (241)
T ss_pred hccCCHHHHHHHHHHHh---cCCcEEEE
Confidence 222 2456888999999 99997654
No 299
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.82 E-value=0.028 Score=55.90 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-------------CCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-------------DKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-------------d~rl~vf------~~ 598 (659)
.+.+||-+|.|.|.++.+|... ..+|++||++|.+++.|++.. ++.. +...|+. .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence 3479999999999999999886 358999999999999988754 2210 1112322 11
Q ss_pred c---cchhHHHHHHHhhccCCCCcEE
Q 006149 599 L---FCLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 599 l---~~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
+ ....+...+.++| +++|.+
T Consensus 108 ~~~~~~~~~l~~i~~~L---kpgG~~ 130 (197)
T PRK11207 108 LEAKTIPGLIANMQRCT---KPGGYN 130 (197)
T ss_pred CCHHHHHHHHHHHHHHc---CCCcEE
Confidence 2 1247788999999 999974
No 300
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.81 E-value=0.053 Score=56.39 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcCC-------------------C-CCCCeeEE---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGF-------------------T-QDKSLKVF--- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fgl-------------------~-~d~rl~vf--- 596 (659)
...+||-||.|.|.++..+.+.+ |+.+|++||+++.+++.|++-... + ++...|+.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 45689999999999999988775 567999999999999999864321 1 11122322
Q ss_pred ---ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 ---NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ---~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ .-..+...++++| +|+|.++.
T Consensus 153 ~~l~~~~d~~~~l~ei~rvL---kpGG~l~i 180 (261)
T PLN02233 153 YGLRNVVDRLKAMQEMYRVL---KPGSRVSI 180 (261)
T ss_pred cccccCCCHHHHHHHHHHHc---CcCcEEEE
Confidence 122 2356788999999 99997655
No 301
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.76 E-value=0.046 Score=55.92 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
..+++||-||-|.|....++....| ..+++.||+||..+++|+++| |+. +++++.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHHhCCCCCC
Confidence 4578999999998887777776654 679999999999999999998 443 233222
Q ss_pred -eccc-------chhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 -NHLF-------CLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 -~~l~-------~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+-+| -.++++.+.+.| +++|++++ |.
T Consensus 145 fD~VfiDa~k~~y~~~~~~~~~ll---~~GG~ii~dn~ 179 (234)
T PLN02781 145 FDFAFVDADKPNYVHFHEQLLKLV---KVGGIIAFDNT 179 (234)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhc---CCCeEEEEEcC
Confidence 1111 145677888888 99998875 55
No 302
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.74 E-value=0.038 Score=57.76 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe------------------eEEec
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL------------------KVFNH 598 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl------------------~vf~~ 598 (659)
....++|=||-|.|+|..+...++ +++|++|.|+++-.+.|++=+ |+...-++ .+|+|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEh 149 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEH 149 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHH
Confidence 445799999999999999999999 789999999999999999866 55421111 23466
Q ss_pred cc---chhHHHHHHHhhccCCCCcEEEecCc
Q 006149 599 LF---CLQLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 599 l~---~~~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
+. -..|++.+++.| +++|.+...++
T Consensus 150 vg~~~~~~ff~~~~~~L---~~~G~~llh~I 177 (283)
T COG2230 150 VGKENYDDFFKKVYALL---KPGGRMLLHSI 177 (283)
T ss_pred hCcccHHHHHHHHHhhc---CCCceEEEEEe
Confidence 63 578999999999 99999988764
No 303
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.0025 Score=59.93 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=50.9
Q ss_pred CCcEEEEeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
+.+.++|-.....+|.+++.|+|++..++.|+.-.+ ...++++++++|||||++-|.....
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 345666655666689999999999999999997655 5789999999999999999988653
No 304
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.66 E-value=0.059 Score=55.63 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCC-CC---------eeEE-eccc---chhHHH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQD-KS---------LKVF-NHLF---CLQLEE 606 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d-~r---------l~vf-~~l~---~~~f~~ 606 (659)
...+||-||-|.|.++..+.+..+. ++++||+||..++.|++-+....- .+ .|+. ..+. -..+..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~ 197 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANPLLELAP 197 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHH
Confidence 4579999999999999988876544 799999999999999987633211 12 2222 1111 234566
Q ss_pred HHHHhhccCCCCcEEEecC
Q 006149 607 DVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 607 ~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.++| +++|.++...
T Consensus 198 ~~~~~L---kpgG~lilsg 213 (250)
T PRK00517 198 DLARLL---KPGGRLILSG 213 (250)
T ss_pred HHHHhc---CCCcEEEEEE
Confidence 788889 9999888764
No 305
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.58 E-value=0.049 Score=53.34 Aligned_cols=113 Identities=9% Similarity=0.084 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHc-CC-CeEEEEcCCHHHH------HHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~-g~-~~VtgvD~S~~~i------~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDv 137 (659)
+++.+|+|+=.|.|.++..++.. |. +.|++.=..+... ..+.....+ ...+...+-.+...+. +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 68999999999999999999876 32 4577654433211 111111111 1245666666666666 5577888
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.....+-+..-.-......++...+++.|||||.|++.++.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8875444332221111223779999999999999999999864
No 306
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.58 E-value=0.077 Score=53.37 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCC------C--------CCeeEE-ecccc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQ------D--------KSLKVF-NHLFC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~------d--------~rl~vf-~~l~~ 601 (659)
...+||-||.|.|.++.+|.+..+ +.+|++||++|.+++.|++.+ |+.. | ...|+. -.-..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 346999999999999999988764 467999999999999999876 3310 0 011211 11112
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
....+.+.+.| +++|.++...
T Consensus 157 ~~~~~~~~~~L---~~gG~lv~~~ 177 (215)
T TIGR00080 157 PKIPEALIDQL---KEGGILVMPV 177 (215)
T ss_pred ccccHHHHHhc---CcCcEEEEEE
Confidence 23445677778 9999887654
No 307
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.55 E-value=0.038 Score=56.49 Aligned_cols=80 Identities=21% Similarity=0.123 Sum_probs=58.5
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~~ 146 (659)
+..+|+|||||-=-++..+... ....++|+||+..+++....-....+...++...|...-+ +....|+.+..=++..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLPC 183 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHHH
Confidence 4789999999988888766655 2358999999999999876666666788899999988864 4578999998777766
Q ss_pred cC
Q 006149 147 LM 148 (659)
Q Consensus 147 l~ 148 (659)
+.
T Consensus 184 le 185 (251)
T PF07091_consen 184 LE 185 (251)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 308
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.53 E-value=0.18 Score=51.84 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC------------CCCCeeEE-ec-----c-cc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVF-NH-----L-FC 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~------------~d~rl~vf-~~-----l-~~ 601 (659)
.+.+||-||.|.|.+...+... ..++++||++|.+++.|++.+.-. .+...|+. .. . ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~ 119 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNL 119 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCH
Confidence 4578999999999999998875 368999999999999999864210 12233443 11 1 23
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+...++++| +++|.+....
T Consensus 120 ~~~l~~~~~~L---k~gG~l~~~~ 140 (251)
T PRK10258 120 STALRELYRVV---RPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHHc---CCCeEEEEEe
Confidence 46678889999 9999887754
No 309
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.52 E-value=0.088 Score=52.21 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE------ecc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF------NHL 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf------~~l 599 (659)
.+.+||-||.|.|.++.++... +.+|++||++|.+++.|++.. ++. .++..|+. .++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 4579999999999999999975 368999999999999887654 221 01233422 122
Q ss_pred c---chhHHHHHHHhhccCCCCcEE
Q 006149 600 F---CLQLEEDVNLVLFGLSSESCI 621 (659)
Q Consensus 600 ~---~~~f~~~~~~~Lf~~~~~g~~ 621 (659)
. ...+.+.++++| +|+|.+
T Consensus 108 ~~~~~~~~l~~~~~~L---kpgG~l 129 (195)
T TIGR00477 108 QAGRVPEIIANMQAHT---RPGGYN 129 (195)
T ss_pred CHHHHHHHHHHHHHHh---CCCcEE
Confidence 1 246788999999 999974
No 310
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.52 E-value=0.16 Score=50.95 Aligned_cols=134 Identities=15% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC-C
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF-M 131 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~-~ 131 (659)
.+..++.. +.++.||||--+.+...|.+.+ ...+++.|+++..++.+.+...... ++++..++|... ++ .
T Consensus 9 ~va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~~ 82 (226)
T COG2384 9 TVANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLEL 82 (226)
T ss_pred HHHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccCc
Confidence 35566643 5569999999999999999885 4689999999999998877765544 578888888855 33 3
Q ss_pred CCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 132 ~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
+..+|+|+..|+-..+ +...+++-...|+.=-+|++..-.++.-++.++. ..+|.+....+-.+
T Consensus 83 ~d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~--~~~~~I~~E~ileE 146 (226)
T COG2384 83 EDEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWLS--ANSYEIKAETILEE 146 (226)
T ss_pred cCCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHH--hCCceeeeeeeecc
Confidence 4489999876654433 5678888888887555566554443332222221 34788887776544
No 311
>PLN02476 O-methyltransferase
Probab=95.47 E-value=0.034 Score=58.27 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
..+++||-||-|.|..+.++....| +-+|+.+|+||+..++|+++| |+. +++++.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcccCCC
Confidence 4578999999999999999988765 568999999999999999999 664 344333
Q ss_pred -ecc-------cchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 -NHL-------FCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 -~~l-------~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+-+ --.++++.+...| +++|++++ |.
T Consensus 195 FD~VFIDa~K~~Y~~y~e~~l~lL---~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDADKRMYQDYFELLLQLV---RVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhc---CCCcEEEEecC
Confidence 111 1255677788888 99998875 55
No 312
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.44 E-value=0.066 Score=53.15 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhh---cCCCCCCCe-------------eEEeccc---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDY---FGFTQDKSL-------------KVFNHLF--- 600 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~---Fgl~~d~rl-------------~vf~~l~--- 600 (659)
...+||-+|.|.|.+...+.... +..++++||++|..++.|++- |++.++-.+ .-|+.++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 34689999999999998887654 567999999999999999865 454211000 1122222
Q ss_pred ----chhHHHHHHHhhccCCCCcEEEecC
Q 006149 601 ----CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 601 ----~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
-.++.+.+.++| +++|.++...
T Consensus 120 ~~~~~~~~l~~~~~~L---kpgG~lv~~~ 145 (198)
T PRK00377 120 GSEKLKEIISASWEII---KKGGRIVIDA 145 (198)
T ss_pred CcccHHHHHHHHHHHc---CCCcEEEEEe
Confidence 255677788888 9999887644
No 313
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.40 E-value=0.077 Score=56.39 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=58.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-CCCCe---------------eEE--ecc--
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSL---------------KVF--NHL-- 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl---------------~vf--~~l-- 599 (659)
....+||=||+|.|.++..+.+.+|+.+++++|+ |.|++.|++...-. -++|+ |++ .++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh 226 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY 226 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence 3457999999999999999999999999999998 78999998764211 01222 322 121
Q ss_pred -cc----hhHHHHHHHhhccCCCCcEEEe
Q 006149 600 -FC----LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 -~~----~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+. ....+.+.++| +|+|.+.+
T Consensus 227 ~~~~~~~~~il~~~~~~L---~pgG~l~i 252 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAM---RSGGRLLI 252 (306)
T ss_pred cCChHHHHHHHHHHHHhc---CCCCEEEE
Confidence 11 34677889999 99997644
No 314
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.35 E-value=0.15 Score=55.80 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=66.6
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC----------------CCCCeeEE-----ec
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT----------------QDKSLKVF-----NH 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~----------------~d~rl~vf-----~~ 598 (659)
.+||=||.|.|.+...+.+.+|..+|++||+++.+++.|++-+ +.. ++.+.|+. .|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 309 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence 5899999999999999999999999999999999999999644 111 01133332 01
Q ss_pred ----c---cchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHHhhcc
Q 006149 599 ----L---FCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 599 ----l---~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~~~~~ 638 (659)
+ ....++.+++++| +++|.+ +.|.+-.....|+++..
T Consensus 310 ~~~~~~~~ia~~l~~~a~~~L---kpGG~L~iV~nr~l~y~~~L~~~fg 355 (378)
T PRK15001 310 QQHALTDNVAWEMFHHARRCL---KINGELYIVANRHLDYFHKLKKIFG 355 (378)
T ss_pred cCccCCHHHHHHHHHHHHHhc---ccCCEEEEEEecCcCHHHHHHHHcC
Confidence 1 1346788889999 999954 45665444455665543
No 315
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=95.32 E-value=0.064 Score=55.31 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhc---CCCCCCCeeEE-------------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVF------------------- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl~vf------------------- 596 (659)
-.+++||-||-+.|--+.++.... ++.+++.+|+||+..++|+++| |+. +++++.
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHHHHhccccCC
Confidence 467899999999988888887765 4679999999999999999999 543 344322
Q ss_pred --e-------cccchhHHHHHHHhhccCCCCcEEEe-cC
Q 006149 597 --N-------HLFCLQLEEDVNLVLFGLSSESCIKD-NS 625 (659)
Q Consensus 597 --~-------~l~~~~f~~~~~~~Lf~~~~~g~~~~-n~ 625 (659)
+ .-....+++.+...| +++|++++ |.
T Consensus 156 ~fD~iFiDadK~~Y~~y~~~~l~ll---~~GGviv~DNv 191 (247)
T PLN02589 156 TFDFIFVDADKDNYINYHKRLIDLV---KVGGVIGYDNT 191 (247)
T ss_pred cccEEEecCCHHHhHHHHHHHHHhc---CCCeEEEEcCC
Confidence 1 112456778888899 99998875 55
No 316
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.24 E-value=0.2 Score=51.11 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=62.0
Q ss_pred CCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCcccEEEeccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGG 143 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDvVi~~g~ 143 (659)
.+.+||-+|=+.- .+..++-. ...+|+.+|+.+..++...+.+.+.+-.++.+..|+.+ |+| .++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~T--- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFT--- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEe---
Confidence 5789999995543 33334333 34699999999999998877777667679999999988 333 379999994
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+|......+.-++.+....||..|......++
T Consensus 119 -----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 119 -----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp --------SSHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 34434456889999999999977754455554
No 317
>PRK10742 putative methyltransferase; Provisional
Probab=95.23 E-value=0.075 Score=54.53 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=61.8
Q ss_pred HHHhhCCCCCCCCC--eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC------C----CCcEEEEee
Q 006149 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (659)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~------~----~~i~~~~~D 124 (659)
+.+.+.. +++. +|||+-+|.|..+..++..|. .|+++|-++.+...+....... . .+++++++|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4555543 3444 999999999999999999998 5999999998877655443331 1 358888888
Q ss_pred cCCC-CCCCCcccEEEecccccc
Q 006149 125 MTSM-QFMDETFDVILDKGGLDA 146 (659)
Q Consensus 125 ~~~l-~~~~~sFDvVi~~g~l~~ 146 (659)
..+. .-...+||+|+.-..+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7765 212347999996655544
No 318
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.21 E-value=0.11 Score=54.00 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.+.+||=+|.|.|.+...+...+|..+++++|+++..++.|++.+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999998764
No 319
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.17 E-value=0.18 Score=50.14 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCC-ccEEEEecChhHHHHHHhhcCCCC---------------CCCeeEE------ec
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQ---------------DKSLKVF------NH 598 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~-~~i~~VEiDp~V~~vA~~~Fgl~~---------------d~rl~vf------~~ 598 (659)
.+.+||-+|.|.|.+...+.+.+|. .+++++|+++.+++.+++.+.... ++..|+. .+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 4579999999999999998888886 799999999999999998775211 1122322 11
Q ss_pred c-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 599 L-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 599 l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+ ....+.+.+.+.| +++|.++.
T Consensus 119 ~~~~~~~l~~~~~~L---~~gG~l~~ 141 (223)
T TIGR01934 119 VTDIQKALREMYRVL---KPGGRLVI 141 (223)
T ss_pred cccHHHHHHHHHHHc---CCCcEEEE
Confidence 1 2356678888889 99997764
No 320
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.14 E-value=0.041 Score=55.08 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=42.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+.+||-||-|.|.+...|...+|..++++||++|.+++.|++.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 4457899999999999999999888889999999999999999875
No 321
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.029 Score=62.33 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=53.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (659)
.+.+++.. ..+..+||+-||||.++..+++. ...|+||++++.+++.|...+..++ .+.+|+++-++++
T Consensus 374 ~i~e~~~l---~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 374 TIGEWAGL---PADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHhCC---CCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 34444443 56789999999999999999765 5699999999999998866655554 6899999955553
No 322
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.11 E-value=0.12 Score=52.15 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCC-----------------eeEE------
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKS-----------------LKVF------ 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~r-----------------l~vf------ 596 (659)
..+||-||.|.|.+...+...+| +.++++||+++.+++.|++.+.-. .+.+ .|+.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 46999999999999999999887 689999999999999999987431 0111 1221
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.++ ....+++.+.++| +++|.+..
T Consensus 132 ~~~~~~~~~l~~~~~~L---~~gG~li~ 156 (239)
T PRK00216 132 RNVPDIDKALREMYRVL---KPGGRLVI 156 (239)
T ss_pred ccCCCHHHHHHHHHHhc---cCCcEEEE
Confidence 111 2456778888889 99997654
No 323
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.05 E-value=0.13 Score=55.60 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=65.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE--e---c--c-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF--N---H--L- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf--~---~--l- 599 (659)
..+||=||.|.|.+...+.+.+|..++++||+++.+++.|++-+... .+.+.|+. + | +
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 35899999999999999999999999999999999999998754211 01233332 1 1 1
Q ss_pred ----cchhHHHHHHHhhccCCCCcEE--EecCchHHHHHHH
Q 006149 600 ----FCLQLEEDVNLVLFGLSSESCI--KDNSFPEAAVQLG 634 (659)
Q Consensus 600 ----~~~~f~~~~~~~Lf~~~~~g~~--~~n~~~~~~~~l~ 634 (659)
....|...+.+.| +++|.+ +.|.+-.-...|+
T Consensus 277 ~~~~~~~~~i~~a~~~L---kpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHL---NSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred ccHHHHHHHHHHHHHhc---CcCCEEEEEEeCCCChHHHHH
Confidence 1367888899999 999955 6787543333333
No 324
>PRK06922 hypothetical protein; Provisional
Probab=95.02 E-value=0.13 Score=59.67 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
+.+||=||.|.|.+...+...+|+.++++||+++.+++.|++-
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar 461 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK 461 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4699999999999999998889999999999999999999864
No 325
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.01 E-value=0.087 Score=54.93 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=38.2
Q ss_pred CCCCeEEEEccCcc----hHHHHHHhhCC-----CccEEEEecChhHHHHHHh
Q 006149 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 540 ~~~~~vLiiGlGgG----~l~~~l~~~~p-----~~~i~~VEiDp~V~~vA~~ 583 (659)
+.+.+|+.+|.|.| +|++.|...++ +.+|+++|||+.+++.|++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 45679999999999 58888888765 4799999999999999997
No 326
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.00 E-value=0.098 Score=52.86 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEECCCcchHHHHHHHc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEE
Q 006149 64 PTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVI 138 (659)
Q Consensus 64 ~~~~~~~~ILDiGCG~G~~s~~La~~-g-~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvV 138 (659)
...+|+.+||-+|+++|....+..+. | ..-|++|++|.-.=..+... +..++||-.+.-|+.... +.-+..|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEE
Confidence 44578999999999999998888886 3 35799999998655544333 356688988999987631 223456777
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++. +.. +....-+.-+....||+||.|++..-+
T Consensus 231 FaD-----vaq----pdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 231 FAD-----VAQ----PDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ecc-----CCC----chhhhhhhhhhhhhhccCCeEEEEEec
Confidence 642 111 223455566788899999999987643
No 327
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.92 E-value=0.063 Score=53.86 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=58.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe------------------eEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL------------------KVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl------------------~vf----- 596 (659)
....++|=+|.|-|-..+-|.-..- -+|++||..+..++.|++|++-. ..++ |++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567999999999999986654442 48999999999999999998761 2232 444
Q ss_pred -eccc---chhHHHHHHHhhccCCCCcEEEe--cC
Q 006149 597 -NHLF---CLQLEEDVNLVLFGLSSESCIKD--NS 625 (659)
Q Consensus 597 -~~l~---~~~f~~~~~~~Lf~~~~~g~~~~--n~ 625 (659)
-||. -.+|+..|+..| +|+|+++. |+
T Consensus 132 lghLTD~dlv~fL~RCk~~L---~~~G~IvvKEN~ 163 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQAL---KPNGVIVVKENV 163 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHE---EEEEEEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhC---cCCcEEEEEecC
Confidence 4664 567888999999 99998866 65
No 328
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.90 E-value=0.2 Score=52.96 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=49.7
Q ss_pred HHHHhhCCCC--CCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecCC-
Q 006149 56 PLISLIGAPT--SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTS- 127 (659)
Q Consensus 56 ~l~~~l~~~~--~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~---~~~i~~~~~D~~~- 127 (659)
.+..++.... .....++||||||.+..--.|... |. +++|+|+++..++.|++....+ ..+|+++...-..
T Consensus 88 ~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~ 166 (299)
T PF05971_consen 88 WIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDN 166 (299)
T ss_dssp HHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-S
T ss_pred HHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccc
Confidence 4555555411 112468999999999775444433 66 9999999999999998776555 2567776553221
Q ss_pred ----CCCCCCcccEEEecccccccC
Q 006149 128 ----MQFMDETFDVILDKGGLDALM 148 (659)
Q Consensus 128 ----l~~~~~sFDvVi~~g~l~~l~ 148 (659)
+.-+++.||+.+|+..++.-.
T Consensus 167 i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 167 IFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STTTSTT--S-EEEEEE-----SS-
T ss_pred cchhhhcccceeeEEecCCccccCh
Confidence 112346899999999998754
No 329
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.90 E-value=0.13 Score=53.60 Aligned_cols=80 Identities=19% Similarity=0.159 Sum_probs=57.0
Q ss_pred CCCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCC--------------CCCCeeEE-e----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFT--------------QDKSLKVF-N---- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~--------------~d~rl~vf-~---- 597 (659)
...+||.||.|+|.+...+... .+..+|++||+++.+++.|++.+ ++. ++...|+. .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 4569999999999877766654 45568999999999999999863 331 11223322 1
Q ss_pred -cc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 598 -HL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 598 -~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
++ -....++.+.++| +++|.++.
T Consensus 157 ~~~~d~~~~l~~~~r~L---kpGG~l~i 181 (272)
T PRK11873 157 NLSPDKERVFKEAFRVL---KPGGRFAI 181 (272)
T ss_pred cCCCCHHHHHHHHHHHc---CCCcEEEE
Confidence 11 1246788999999 99998866
No 330
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.017 Score=54.95 Aligned_cols=120 Identities=15% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCcchHHHHH-HHc-CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCC--CCCCCcccEE
Q 006149 67 SPPPQILVPGCGNSRLSEHL-YDA-GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM--QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~L-a~~-g~~~VtgvD~S~~~i~~~~~~~~~~----~~~i~~~~~D~~~l--~~~~~sFDvV 138 (659)
..+.+||++|.|--.++-.| |.. ....|...|-++..++...+....+ ..++..+..+...- ......||+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 34679999999976665444 333 4468999999999998775543222 12222222222111 2334689999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhc
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 193 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~ 193 (659)
++..++..- . ..+.+.+-++++|+|.|..++..+....-++.+..+..
T Consensus 108 laADClFfd--E-----~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~ 155 (201)
T KOG3201|consen 108 LAADCLFFD--E-----HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG 155 (201)
T ss_pred EeccchhHH--H-----HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH
Confidence 988776641 1 25688999999999999988877654444444444443
No 331
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=94.79 E-value=0.038 Score=56.66 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=59.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC--CC----Ce--------------e------EE
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DK----SL--------------K------VF 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~--d~----rl--------------~------vf 596 (659)
++||=+|-|||.|..-|.+.. ..|++||+.+.++++|+++=...+ +- |+ | |.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 579999999999999999986 689999999999999999943321 11 12 1 22
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+|+ .-.+|.+.+-+.| +|+|.+..-.
T Consensus 169 eHV~dp~~~l~~l~~~l---kP~G~lfitt 195 (282)
T KOG1270|consen 169 EHVKDPQEFLNCLSALL---KPNGRLFITT 195 (282)
T ss_pred HHHhCHHHHHHHHHHHh---CCCCceEeee
Confidence 455 3566777778888 9999776644
No 332
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.78 E-value=0.029 Score=55.94 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=55.1
Q ss_pred CCCeEEEECCCcchHHHHHHHc-----CCCeEEEEcCCHHHHHHHHHHhhc--CCCCcEEEEeecCCCC----C----CC
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ----F----MD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~-----g~~~VtgvD~S~~~i~~~~~~~~~--~~~~i~~~~~D~~~l~----~----~~ 132 (659)
+++.|+|+|.-+|..+..+|+. +.++|++||+.-..... ..... -.++|+++++|..+.. . ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 4689999999999988777653 34799999995422211 11111 1378999999988752 1 12
Q ss_pred CcccEEEeccc--ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 133 ETFDVILDKGG--LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 133 ~sFDvVi~~g~--l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
....+|+.-+. -.| +.+.|+....++++|+++|+-+.
T Consensus 110 ~~~vlVilDs~H~~~h----------vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEH----------VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp -SSEEEEESS----SS----------HHHHHHHHHHT--TT-EEEETSH
T ss_pred CCceEEEECCCccHHH----------HHHHHHHhCccCCCCCEEEEEec
Confidence 23446654222 122 45778889999999999998764
No 333
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.75 E-value=0.25 Score=49.31 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=56.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCC-CCCCe-----------------eE-Eecccc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSL-----------------KV-FNHLFC 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~-~d~rl-----------------~v-f~~l~~ 601 (659)
..+||-||.|.|.++..+.+..+ ..++++||++|.+++.|++.+.-. -+.++ |+ +.....
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 36899999999999999888764 458999999999999998765211 01112 21 111122
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+.+.+.| +++|.++...
T Consensus 153 ~~~~~~l~~~L---~~gG~lvi~~ 173 (205)
T PRK13944 153 STIPSALVRQL---KDGGVLVIPV 173 (205)
T ss_pred chhhHHHHHhc---CcCcEEEEEE
Confidence 34556778888 9999887643
No 334
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.75 E-value=0.18 Score=51.71 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=63.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC----------------C-CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----------------T-QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl----------------~-~d~rl~vf------~ 597 (659)
.+.+||=||.|.|-++..+.+..+..+|+++|+.+.|+++|++-..- | +|.-.|+. .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 56899999999999999999999999999999999999999987742 1 22223333 1
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ .-......++||| +|+|.+++.-
T Consensus 131 nv~d~~~aL~E~~RVl---KpgG~~~vle 156 (238)
T COG2226 131 NVTDIDKALKEMYRVL---KPGGRLLVLE 156 (238)
T ss_pred cCCCHHHHHHHHHHhh---cCCeEEEEEE
Confidence 22 2456678899999 9999666533
No 335
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.72 E-value=0.058 Score=47.17 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.6
Q ss_pred EEEEccCcchHHHHHHhhC---CCccEEEEecChhHHHHHHhhcC
Q 006149 545 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 545 vLiiGlGgG~l~~~l~~~~---p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
||=||-|.|...+.+.+.+ |..++++||+|+.+++.|++.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch
Confidence 6789999999999999987 55799999999999999999983
No 336
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.72 E-value=0.16 Score=55.85 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC-CC-----C-----CCCeeEE------ecccc--
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FT-----Q-----DKSLKVF------NHLFC-- 601 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg-l~-----~-----d~rl~vf------~~l~~-- 601 (659)
...+||-||.|.|.++.++.+.+ +.+|++||+++..++.|++-.. +. . +...|+. +|+-.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~ 245 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKN 245 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHH
Confidence 34699999999999999998876 4699999999999999987542 11 0 1223322 33321
Q ss_pred -hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 -LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 -~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+++.+.++| +|+|.++...
T Consensus 246 ~~~~l~~i~r~L---kpGG~lvl~~ 267 (383)
T PRK11705 246 YRTYFEVVRRCL---KPDGLFLLHT 267 (383)
T ss_pred HHHHHHHHHHHc---CCCcEEEEEE
Confidence 46888999999 9999887754
No 337
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=94.71 E-value=0.099 Score=52.20 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-----------CCCeeEE------ecc-cc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----------DKSLKVF------NHL-FC 601 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-----------d~rl~vf------~~l-~~ 601 (659)
..+.+|.=||.|-|-....|++.+|.+.|+++|-+|+|++-|++-..-.. ..-.+++ ..| ..
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH 108 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPDH 108 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhcccc
Confidence 46789999999999999999999999999999999999999988763221 1112322 233 24
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
.+.+..+-..| .|+|+++++.
T Consensus 109 ~~ll~rL~~~L---~Pgg~LAVQm 129 (257)
T COG4106 109 PELLPRLVSQL---APGGVLAVQM 129 (257)
T ss_pred HHHHHHHHHhh---CCCceEEEEC
Confidence 45556666677 9999999865
No 338
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.71 E-value=0.11 Score=55.17 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=73.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcC-CC-----CcEEE
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-RS-----DMRWR 121 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~-~~-----~i~~~ 121 (659)
|..+...|.++-...+.-...+|||+|.|.|.-...+.+. ...+++-++.|+..-+.. ....++ .+ +..-+
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t~~td~r~s~v 173 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG-DTLAENVSTEKTDWRASDV 173 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH-HHHHhhcccccCCCCCCcc
Confidence 4444444544443333345678999999999887766654 225677788887443322 222221 11 11223
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCch
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~ 183 (659)
..|-..+|. ...|++|+.. +-+.....+ .-+..+++.+..++.|||.+++++.+.+-
T Consensus 174 t~dRl~lp~-ad~ytl~i~~---~eLl~d~~e-k~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 174 TEDRLSLPA-ADLYTLAIVL---DELLPDGNE-KPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred chhccCCCc-cceeehhhhh---hhhccccCc-chHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 334333443 3567777744 333322211 11445899999999999999999987553
No 339
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.63 E-value=0.064 Score=53.77 Aligned_cols=140 Identities=25% Similarity=0.272 Sum_probs=89.7
Q ss_pred CCeEEEECCCcchHHHHHHHc--------CC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------C
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--------GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------F 130 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--------g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~ 130 (659)
-.+++|+....|.++..|.+. +. ..|++||+-+ | ..-+.+..+++|++... |
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----M-----aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----M-----APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----C-----CccCceEEeecccCCHhHHHHHHHHh
Confidence 469999999999999888764 11 1399999876 3 23467899999999863 6
Q ss_pred CCCcccEEEecccccccCCcccc----hHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhhccCceEEEeeeCCC
Q 006149 131 MDETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (659)
Q Consensus 131 ~~~sFDvVi~~g~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (659)
..++-|+|+|-|+-+...--+-+ ..++..+|+-...+|||||.|+.-.+..... ..+...++.++.--...-+ .
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~t-slLysql~~ff~kv~~~KP-r 189 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDT-SLLYSQLRKFFKKVTCAKP-R 189 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCch-HHHHHHHHHHhhceeeecC-C
Confidence 67799999998876643221111 1236778888899999999999766543221 1233333333332222222 3
Q ss_pred CCCCCCCccEEEEEE
Q 006149 207 SSSEPSLQTFMVVAD 221 (659)
Q Consensus 207 ~~~~~~l~~f~~v~~ 221 (659)
+.+.+.++.|.+ |.
T Consensus 190 sSR~sSiEaFvv-C~ 203 (294)
T KOG1099|consen 190 SSRNSSIEAFVV-CL 203 (294)
T ss_pred ccccccceeeee-ec
Confidence 334455666654 53
No 340
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.55 E-value=0.31 Score=49.57 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 588 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~ 588 (659)
-.++.+|=||--.|.|.-.++.+|....|.+|||||..+..|+++-.++
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 4678899999999999999999998889999999999999999987554
No 341
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.53 E-value=0.21 Score=54.03 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=59.4
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--------------CCCCeeEE------ecc-
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--------------QDKSLKVF------NHL- 599 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--------------~d~rl~vf------~~l- 599 (659)
...+||-||.|.|.+...+.+.++..++++||+++.+++.|++.+... ++...|+. .++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 346899999999999988888888789999999999999999876421 11223432 111
Q ss_pred cchhHHHHHHHhhccCCCCcEEEe
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
......+.+.++| +++|.++.
T Consensus 193 d~~~~L~e~~rvL---kPGG~LvI 213 (340)
T PLN02490 193 DPQRGIKEAYRVL---KIGGKACL 213 (340)
T ss_pred CHHHHHHHHHHhc---CCCcEEEE
Confidence 1245678899999 99998754
No 342
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.13 Score=53.55 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=85.6
Q ss_pred CCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCcccE
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDV 137 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDv 137 (659)
....+++|.||-|.|......+.+ ...+++-+|+.+.+++.-++-... .++++..+.+|...+ ....++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 345789999999999999888887 457899999999988866543322 237899999987765 344689999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~ 192 (659)
|+.... +-+++ ....-.+.++..+.+.||+||+.++..-+ -|+...++.+.
T Consensus 199 ii~dss-dpvgp--a~~lf~~~~~~~v~~aLk~dgv~~~q~ec-~wl~~~~i~e~ 249 (337)
T KOG1562|consen 199 IITDSS-DPVGP--ACALFQKPYFGLVLDALKGDGVVCTQGEC-MWLHLDYIKEG 249 (337)
T ss_pred EEEecC-Cccch--HHHHHHHHHHHHHHHhhCCCcEEEEecce-ehHHHHHHHHH
Confidence 995321 11110 01112678999999999999999887633 34444444443
No 343
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.41 E-value=0.084 Score=49.84 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCCeEEEEccCcchHHHHHH-hhCCCccEEEEecChhHHHHHHhhc---CCC---------CC------CCeeEE-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFT---------QD------KSLKVF----- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~-~~~p~~~i~~VEiDp~V~~vA~~~F---gl~---------~d------~rl~vf----- 596 (659)
...+||=||.|.|.+...+. ...|..++++||+++.+++.|++.+ +++ .+ ...|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 35799999999999999999 5678899999999999999999953 443 01 123333
Q ss_pred -eccc-chhHHHHHHHhhccCCCCcEEEecCch
Q 006149 597 -NHLF-CLQLEEDVNLVLFGLSSESCIKDNSFP 627 (659)
Q Consensus 597 -~~l~-~~~f~~~~~~~Lf~~~~~g~~~~n~~~ 627 (659)
.++. ...+++.+.+.| +++|++....+.
T Consensus 83 l~~~~~~~~~l~~~~~~l---k~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDPEKVLKNIIRLL---KPGGILIISDPN 112 (152)
T ss_dssp GGGTSHHHHHHHHHHHHE---EEEEEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHc---CCCcEEEEEECC
Confidence 1222 335778889999 999988765533
No 344
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.39 E-value=0.12 Score=57.66 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred CCeEEEECCCcchHHHHHHHc---C--CCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCcccEEEecc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA---G--FHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~---g--~~~VtgvD~S~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDvVi~~g 142 (659)
...|+.+|.|-|-+.....+. . .-++++|+-++.++-.+..++.. ...+++.+..||+..+.+.++.|++++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 457889999999886544332 1 24789999999998766554433 3468999999999998556889998864
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.|..+.+.+.. ...|.-+.++|||+|+.|=..+.
T Consensus 447 LLGSFGDNELS----PECLDG~q~fLkpdgIsIP~sYt 480 (649)
T KOG0822|consen 447 LLGSFGDNELS----PECLDGAQKFLKPDGISIPSSYT 480 (649)
T ss_pred hhccccCccCC----HHHHHHHHhhcCCCceEccchhh
Confidence 45555655533 47899999999999988865554
No 345
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.34 E-value=0.3 Score=51.51 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=57.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CC---------------CeeEE-eccc---c
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DK---------------SLKVF-NHLF---C 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~---------------rl~vf-~~l~---~ 601 (659)
..+||-+|.|.|.++..+.+.. ..++++||+||..++.|++.+.... .. ..|+. ..+. -
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~l 238 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEVI 238 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHHH
Confidence 4799999999999998888754 3489999999999999998763221 11 11222 1111 1
Q ss_pred hhHHHHHHHhhccCCCCcEEEecC
Q 006149 602 LQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+...+.++| +++|.+..-.
T Consensus 239 ~~ll~~~~~~L---kpgG~li~sg 259 (288)
T TIGR00406 239 KELYPQFSRLV---KPGGWLILSG 259 (288)
T ss_pred HHHHHHHHHHc---CCCcEEEEEe
Confidence 35777888899 9999887754
No 346
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.06 E-value=0.19 Score=48.41 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=41.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 595 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~v 595 (659)
..+||=||.|.|.+...+... ..++++||+|+.+++.+++.+.- .+++++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~i 63 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTV 63 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEE
Confidence 358999999999999999987 36899999999999999998853 334543
No 347
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=94.03 E-value=0.21 Score=48.57 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||-+|.|.|.+...+....+ ++++||++|.+++.|++.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENA 61 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHH
Confidence 346899999999999999998876 8999999999999999865
No 348
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.12 Score=53.48 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=44.2
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..+|+-||-|-|+|.+.|.... .++++||||+.++.+-++.|. .-+++.++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi 81 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVI 81 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEE
Confidence 4689999999999999999987 369999999999999999998 34566665
No 349
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=93.91 E-value=0.37 Score=52.90 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=67.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC----------------CCCee-EEe---
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ----------------DKSLK-VFN--- 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~----------------d~rl~-vf~--- 597 (659)
..+.+|=||.|.|.....+....|+..+.+|||++.+++.|.+-. |+.. +..++ ++-
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 346899999999999999999999999999999999988887665 3211 11111 111
Q ss_pred ---------cccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 598 ---------HLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 598 ---------~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
.|....|.+.+.++| +++|.+...+ .......++.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvL---kpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVL---KPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHc---CCCcEEEEEEECHHHHHHHHHHHHh
Confidence 133468999999999 9999776644 3444444444444
No 350
>PRK04148 hypothetical protein; Provisional
Probab=93.87 E-value=0.13 Score=47.91 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCCeEEEEccCcc-hHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 540 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 540 ~~~~~vLiiGlGgG-~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
.+..++|+||+|-| .++..|.+. +.+|++||+||..++-|++.
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh
Confidence 34578999999977 599999975 36999999999999988775
No 351
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.86 E-value=0.44 Score=51.48 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=62.5
Q ss_pred CCCCeEEEECCCcchHHHHHHHc------------C-----CCeEEEEcCCHHHHHHHHHHhhc------CCCCc--EEE
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDA------------G-----FHGITNVDFSKVVISDMLRRNVR------DRSDM--RWR 121 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~------------g-----~~~VtgvD~S~~~i~~~~~~~~~------~~~~i--~~~ 121 (659)
...-+|+|+||..|..+..+... + .-+|.--|.-..=...+.+.... ..+++ .-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 35679999999999999777542 1 01566666433221111111100 11222 223
Q ss_pred EeecCCCCCCCCcccEEEecccccccCCcccc---------------------h-----------HHHHHHHHHHHhccc
Q 006149 122 VMDMTSMQFMDETFDVILDKGGLDALMEPELG---------------------H-----------KLGNQYLSEVKRLLK 169 (659)
Q Consensus 122 ~~D~~~l~~~~~sFDvVi~~g~l~~l~~~~~~---------------------~-----------~~~~~~l~ei~rvLk 169 (659)
-+.+..--||+++.|++++..++||+.....+ + .++..+|+.=.+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 34555445889999999999999998642100 0 125555666667789
Q ss_pred cCeEEEEEEcCCch
Q 006149 170 SGGKFVCLTLAESH 183 (659)
Q Consensus 170 pGG~lvi~~~~~~~ 183 (659)
|||++++..++.+.
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999999887554
No 352
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.83 E-value=0.3 Score=48.75 Aligned_cols=86 Identities=17% Similarity=0.306 Sum_probs=65.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCe------------------------eEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL------------------------KVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl------------------------~vf 596 (659)
+..|||-||.|-|....|+.+.-|. +-..+|-.|.|.+--|+|=--. -+++ |.|
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccccccCcceeEeech
Confidence 4579999999999999999999887 8899999999999888774322 2222 223
Q ss_pred eccc--chhHHHHHHHhhccCCCCcEEEe-cCchHHHH
Q 006149 597 NHLF--CLQLEEDVNLVLFGLSSESCIKD-NSFPEAAV 631 (659)
Q Consensus 597 ~~l~--~~~f~~~~~~~Lf~~~~~g~~~~-n~~~~~~~ 631 (659)
..++ +.+|++.+-+.| +|+|++.. |.++....
T Consensus 179 ~e~yEdl~~~hqh~~rLL---kP~gv~SyfNg~~~~~~ 213 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLL---KPEGVFSYFNGLGADNL 213 (271)
T ss_pred hhHHHHHHHHHHHHhhhc---CCCceEEEecCcccchh
Confidence 3333 678888899999 99999976 87654433
No 353
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.82 E-value=0.13 Score=52.71 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcC----------------CC-CCCCeeEE-----
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG----------------FT-QDKSLKVF----- 596 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fg----------------l~-~d~rl~vf----- 596 (659)
..+.+||=+|.|.|.+...|.+.. |+.+|++||+.+.++++|++-.. +| +|+..|+.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 345699999999999999888764 67899999999999999997531 11 23333433
Q ss_pred -ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 -NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 -~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+ .-....++++++| +|+|.+++
T Consensus 126 lrn~~d~~~~l~E~~RVL---kPGG~l~i 151 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVL---KPGGRLVI 151 (233)
T ss_dssp GGG-SSHHHHHHHHHHHE---EEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHc---CCCeEEEE
Confidence 112 2356778999999 99997655
No 354
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.80 E-value=0.9 Score=45.48 Aligned_cols=123 Identities=11% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---CCCeEEEEcCCHHHHHHHHHHhh--------------------
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNV-------------------- 112 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---g~~~VtgvD~S~~~i~~~~~~~~-------------------- 112 (659)
++...+.......+-++-|..||.|.+.-.+.-. ...+|++.|+++.+++-+.+...
T Consensus 39 i~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 39 IFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 4444444433356679999999999987555432 34789999999999987755422
Q ss_pred ---------------------cC--CCCcEEEEeecCCCC-----CCCCcccEEEecccccccCCccc--chHHHHHHHH
Q 006149 113 ---------------------RD--RSDMRWRVMDMTSMQ-----FMDETFDVILDKGGLDALMEPEL--GHKLGNQYLS 162 (659)
Q Consensus 113 ---------------------~~--~~~i~~~~~D~~~l~-----~~~~sFDvVi~~g~l~~l~~~~~--~~~~~~~~l~ 162 (659)
.. .......+.|+++.. -.....|+|+.--....+.+.+. +......+|+
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 11 123557788888731 11234699997655555444332 2234889999
Q ss_pred HHHhccccCeEEEEEE
Q 006149 163 EVKRLLKSGGKFVCLT 178 (659)
Q Consensus 163 ei~rvLkpGG~lvi~~ 178 (659)
.++.+|-.++++++++
T Consensus 199 ~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 199 SLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHCCS-TT-EEEEEE
T ss_pred HHHhhCCCCcEEEEec
Confidence 9999995555555533
No 355
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.60 E-value=1.2 Score=50.82 Aligned_cols=194 Identities=13% Similarity=0.100 Sum_probs=107.2
Q ss_pred hHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcCCHHHH
Q 006149 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVI 104 (659)
Q Consensus 30 yWd~~y~~~~~~~~fewy~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~S~~~i 104 (659)
|--..|+... +....-|....++...+.+++.. .+..+|.|..||+|.+....++. . ...++|.++.+...
T Consensus 152 ~ll~~fa~~~-~k~~GEfyTP~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~ 227 (489)
T COG0286 152 YLLRKFAEAE-GKEAGEFYTPREVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY 227 (489)
T ss_pred HHHHHHHHhc-CCCCCccCChHHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH
Confidence 4444455442 33323334456777778888764 56679999999999887665543 1 24689999998877
Q ss_pred HHHHHHhhcCCC--CcEEEEeecCCCCC-----CCCcccEEEeccccccc--CCcc-----------cc-----hHHHHH
Q 006149 105 SDMLRRNVRDRS--DMRWRVMDMTSMQF-----MDETFDVILDKGGLDAL--MEPE-----------LG-----HKLGNQ 159 (659)
Q Consensus 105 ~~~~~~~~~~~~--~i~~~~~D~~~l~~-----~~~sFDvVi~~g~l~~l--~~~~-----------~~-----~~~~~~ 159 (659)
.-++-...-++- .+....+|-..-|. ..+.||+|+++..+... .... .+ ...-..
T Consensus 228 ~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 307 (489)
T COG0286 228 RLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA 307 (489)
T ss_pred HHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence 655444332332 24455555444432 33679999987655311 1000 00 011378
Q ss_pred HHHHHHhccccCeEEEEEEcCCchhhc----chhhhhcc-CceEEEeeeCCCCCCCCCCccEEEEEEecCCcc
Q 006149 160 YLSEVKRLLKSGGKFVCLTLAESHVLG----LLFPKFRF-GWKMSVHAIPQKSSSEPSLQTFMVVADKENSSV 227 (659)
Q Consensus 160 ~l~ei~rvLkpGG~lvi~~~~~~~~~~----~l~~~~~~-~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~ 227 (659)
.++++...|+|||+..++.+..-.++. .+...... ...-.+-.++..--.....+..+++.+|.+...
T Consensus 308 f~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t~i~~~Il~l~k~k~~~ 380 (489)
T COG0286 308 FLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNTGIPTNILFLTKNKPAE 380 (489)
T ss_pred HHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccCCCCeEEEEeecCCCCC
Confidence 999999999999977666544222221 12222211 122222223222112235666778887765433
No 356
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=93.60 E-value=0.26 Score=51.12 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=42.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..+||-||.|.|++...+.... .++++||+|+.+++.+++.+.- .+++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii 80 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEII 80 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEE
Confidence 4689999999999999999884 4899999999999999998853 3455544
No 357
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.44 E-value=0.12 Score=46.07 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcC
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~ 99 (659)
.+.....|+|||||.+...|...|+ .=.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 3567899999999999999999998 6788885
No 358
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.40 E-value=0.57 Score=39.19 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=34.2
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
+++-+|.|.|.+...+.. .+..++.++|+++..++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHH
Confidence 478999999998888887 567799999999999999984
No 359
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.39 E-value=0.62 Score=50.02 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=38.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCC-ccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~-~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||.||.|.|.++..+.+..+. ..|++||++|.+++.|++-+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l 125 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 125 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH
Confidence 468999999999999999887753 47999999999999998754
No 360
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.36 E-value=0.24 Score=52.35 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe--ecCCC------CCCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM--DMTSM------QFMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~--D~~~l------~~~~~sFD 136 (659)
+++.+||.+|+|+ |..+...++. |..+|+.+|.++.-++.+++ +-. ..+..... +...+ -+....||
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA--TVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC--eEEeeccccccHHHHHHHHHhhccccCCC
Confidence 5789999999998 5555655655 88899999999999997765 311 11111111 01110 12334588
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
+.++-..++ ..++.....+++||.+++..+..+..
T Consensus 245 ~~~dCsG~~-------------~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 245 VTFDCSGAE-------------VTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred eEEEccCch-------------HHHHHHHHHhccCCEEEEeccCCCcc
Confidence 888654333 55777788999999999998886554
No 361
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.33 E-value=0.15 Score=53.84 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=41.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+.+||=+|.|.|+++..+.+.+|+.++++||+++..+++|++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999875
No 362
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.26 E-value=0.3 Score=50.46 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=44.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||-||-|.|.+...|.+..+ ++++||+|+.+++.+++.++. ++++.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~ 80 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVI 80 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEE
Confidence 346899999999999999999885 599999999999999998864 4566554
No 363
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.23 E-value=0.53 Score=48.26 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCC------ccEEEEecChhHHHHHHhhc---CCCCCCCe-----------------
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSL----------------- 593 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~------~~i~~VEiDp~V~~vA~~~F---gl~~d~rl----------------- 593 (659)
+...++|=+++|.|-++--+.++.+. .+|+++||+|.++.++++-= ++.++.|+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34578999999999999888888776 79999999999999998776 77766655
Q ss_pred eEE------ecc-cchhHHHHHHHhhccCCCCcEEEe
Q 006149 594 KVF------NHL-FCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 594 ~vf------~~l-~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
|+| ... .-..-.+..+++| +|+|.+..
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVL---KpGGrf~c 212 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVL---KPGGRFSC 212 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhc---CCCcEEEE
Confidence 333 111 2344567789999 99997764
No 364
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.13 E-value=0.24 Score=51.84 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=43.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
...+||=||-|.|.+...|....+ ++++||+|+.+++.+++-+. ++++++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i 92 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTII 92 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEE
Confidence 346899999999999999999875 89999999999999998774 2466554
No 365
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.00 E-value=0.25 Score=52.04 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=54.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCC------------CCCCeeEE------ecc-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFT------------QDKSLKVF------NHL- 599 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~------------~d~rl~vf------~~l- 599 (659)
+.+||-||.|.|.++.+|... +.+|++||+++.+++.|++.. ++. .+++.|+. .++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 469999999999999999875 369999999999999887654 221 01233432 122
Q ss_pred --cchhHHHHHHHhhccCCCCcEEE
Q 006149 600 --FCLQLEEDVNLVLFGLSSESCIK 622 (659)
Q Consensus 600 --~~~~f~~~~~~~Lf~~~~~g~~~ 622 (659)
....+.+.+.++| +++|.+.
T Consensus 199 ~~~~~~~l~~~~~~L---kpgG~~l 220 (287)
T PRK12335 199 RERIPAIIKNMQEHT---NPGGYNL 220 (287)
T ss_pred HHHHHHHHHHHHHhc---CCCcEEE
Confidence 1245778889999 9999743
No 366
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.67 Score=47.59 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCeEEEEccCcchHHHHHHhh-CCCccEEEEecChhHHHHHHhhc---CCCCCCCe---eE--------Eec-----ccc
Q 006149 542 SVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL---KV--------FNH-----LFC 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~-~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl---~v--------f~~-----l~~ 601 (659)
..+|+-.|-|.|+|+.+|.+. .|.-+++.+|++++-.+.|++-| |+.+.-.+ |+ |+. .--
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~P 174 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPDP 174 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCCh
Confidence 479999999999999999974 56679999999999999999765 55431111 11 122 236
Q ss_pred hhHHHHHHHhhccCCCCcEEEe--cCchHHHHHHHhhcc
Q 006149 602 LQLEEDVNLVLFGLSSESCIKD--NSFPEAAVQLGKLVK 638 (659)
Q Consensus 602 ~~f~~~~~~~Lf~~~~~g~~~~--n~~~~~~~~l~~~~~ 638 (659)
.++.+.+..+| +++|.+++ -++.+....+.++.+
T Consensus 175 W~~le~~~~~L---kpgg~~~~y~P~veQv~kt~~~l~~ 210 (256)
T COG2519 175 WNVLEHVSDAL---KPGGVVVVYSPTVEQVEKTVEALRE 210 (256)
T ss_pred HHHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHh
Confidence 67889999999 99998876 446666666666665
No 367
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.73 E-value=0.22 Score=46.74 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=59.1
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC-------CCCCCeeEE------ecc-cchhHH
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQDKSLKVF------NHL-FCLQLE 605 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl-------~~d~rl~vf------~~l-~~~~f~ 605 (659)
....+||=||.|.|.+...++.... ++++||+++.+++.....+.. ..+...|+. +|+ .-..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l 98 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFL 98 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHH
Confidence 4568999999999999999976643 899999999999871111110 122344443 555 357888
Q ss_pred HHHHHhhccCCCCcEEEecCc
Q 006149 606 EDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 606 ~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
+.+.++| +|+|.+....+
T Consensus 99 ~~l~~~L---kpgG~l~~~~~ 116 (161)
T PF13489_consen 99 KELSRLL---KPGGYLVISDP 116 (161)
T ss_dssp HHHHHCE---EEEEEEEEEEE
T ss_pred HHHHHhc---CCCCEEEEEEc
Confidence 8999999 99998877553
No 368
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.62 E-value=0.92 Score=45.35 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC--------------CCCeeEE-ecccch
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ--------------DKSLKVF-NHLFCL 602 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~--------------d~rl~vf-~~l~~~ 602 (659)
...+||-||.|.|.++.++.... .++++||+++.+++.|++.| ++.. ....|+. ..-...
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 34799999999999988887765 37999999999999999876 3321 0112211 111122
Q ss_pred hHHHHHHHhhccCCCCcEEEecCc
Q 006149 603 QLEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
.+.+.+.+.| +++|.++....
T Consensus 156 ~~~~~l~~~L---~~gG~lv~~~~ 176 (212)
T PRK00312 156 EIPRALLEQL---KEGGILVAPVG 176 (212)
T ss_pred hhhHHHHHhc---CCCcEEEEEEc
Confidence 3345667778 99998877554
No 369
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.47 E-value=0.27 Score=54.88 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcchHHHHHHHcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCCCCcccEEEecccc
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~--~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~~~sFDvVi~~g~l 144 (659)
.-..|+|...|.|.++..|.+.+. -+|+-+ ..+..+....+| + -+- .-.|. +.++.-+.+||+|-+.+.|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----G-LIG-~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----G-LIG-VYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----c-cch-hccchhhccCCCCcchhheehhhhh
Confidence 346899999999999999988753 122222 112222211111 1 011 11222 2344445899999999988
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchhhcchhhhh-ccCceEEEeeeCC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQ 205 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~~l~~~~-~~~w~~~~~~i~~ 205 (659)
....+.- .++.++-|+-|+|+|||.+++-+-. .+...+-.-. ...|...+.....
T Consensus 438 s~~~~rC----~~~~illEmDRILRP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 438 SLYKDRC----EMEDILLEMDRILRPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhcccc----cHHHHHHHhHhhcCCCceEEEeccH--HHHHHHHHHHHhCcceEEEEecCC
Confidence 8765432 3789999999999999999997753 4444443333 3479888876543
No 370
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.45 E-value=0.044 Score=56.85 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh--------cCCCCcEE---EEeecCCCCC-CCC-
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV--------RDRSDMRW---RVMDMTSMQF-MDE- 133 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~--------~~~~~i~~---~~~D~~~l~~-~~~- 133 (659)
..+.+|||+|||.|.........|...+...|++..+++.-.--+. .......+ .+.+..+..+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 3578999999999999998888886689999999988731110000 00011111 1110001111 113
Q ss_pred -cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 -TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 -sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.||+|.+.-+++...... ..+......+++++|+++...
T Consensus 195 ~~ydlIlsSetiy~~~~~~------~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLA------VLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchhh------hhHhhhhhhcCCccchhhhhh
Confidence 799999988888865543 122566677788899887654
No 371
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.42 E-value=0.2 Score=53.39 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=41.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=+|.|.|+++..+...+|+.++++|||+|..+++|++..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999875
No 372
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.31 E-value=0.34 Score=52.58 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecC-C-CCCCC-CcccEEEec
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMT-S-MQFMD-ETFDVILDK 141 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~-D~~-~-l~~~~-~sFDvVi~~ 141 (659)
++.+|+.+|||+ |.++..+++. |...|+.+|.++.-++.+++..... .+..... +.. . ..... ..+|+++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~--~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD--VVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe--EeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 445999999998 6666666665 7789999999998888775533211 0111101 100 0 01112 369999964
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
.. . ..++..+.+.+++||.+++.....
T Consensus 246 ~G-----~--------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG-----S--------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC-----C--------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 43 1 267999999999999999988753
No 373
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.26 E-value=0.31 Score=51.16 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=51.8
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC--CCcccEEEeccc
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM--DETFDVILDKGG 143 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~--~~sFDvVi~~g~ 143 (659)
+++|+-||.|.++.-+...|+..+.++|+++.+++..+... +.. .+++|+.++... ...+|+|+....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~----~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF----PNK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhC----CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 68999999999999998889878899999998887553332 222 677888887532 357999996543
No 374
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.23 E-value=0.39 Score=51.06 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
.+.+...+.+++.. .++..++|.-.|.|..+..+.+. +...++|+|-++.+++.+.++......++.++.+++.++
T Consensus 5 ~PVll~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 5 IPVLLKEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred ecccHHHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 34555566677764 67889999999999999999876 447999999999999877666544446677777666554
No 375
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.21 E-value=0.76 Score=49.36 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++.+||..|||. |..+..+++. |..+|+++|.++.-++.+++ .. ... +.....|+.+.....+.+|+|++.-.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lG--a~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MG--ADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cC--CcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 3678999999863 3344555554 66679999999987775533 21 111 11111111111111235898885321
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ...+....+.|++||+++++...
T Consensus 245 -----~--------~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 245 -----H--------PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred -----C--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 1 14577888899999999988753
No 376
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.16 E-value=0.69 Score=49.75 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCCeEEEECCC-cchHHHHHHH-cCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee-cCCCCCCCCcccEEEecc
Q 006149 66 SSPPPQILVPGCG-NSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD-MTSMQFMDETFDVILDKG 142 (659)
Q Consensus 66 ~~~~~~ILDiGCG-~G~~s~~La~-~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D-~~~l~~~~~sFDvVi~~g 142 (659)
..|+.+|+-+|+| -|.++..+++ .| .+|+++|.++.-.+.+++.-+ -.++... -....--.+.||+|++.-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 3689999999998 2356677777 47 599999999977776644321 1233322 111111123499999754
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. . ..+....+.|++||+++++-+.
T Consensus 238 ~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 3 2 4588889999999999999876
No 377
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=1.3 Score=45.34 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCc--EEEEeecCCC--CCCCCccc-E
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDM--RWRVMDMTSM--QFMDETFD-V 137 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~~~~~~~~i--~~~~~D~~~l--~~~~~sFD-v 137 (659)
.+...+|+|.||+.-+..|.+. +. ..++.||+|...+....+......+.+ .-+++|...- ..+...-- .
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4689999999999988877664 32 579999999999987666665566654 4466665431 12222222 3
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
++...++.++...+ ...+|..+...|+||-+|++-.
T Consensus 158 ~flGStlGN~tp~e-----~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGE-----CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHH-----HHHHHHHHHhcCCCcceEEEec
Confidence 44455677776655 6799999999999999988765
No 378
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.97 E-value=0.29 Score=49.21 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCCCCCCe-----------------eE-Eecccch
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSL-----------------KV-FNHLFCL 602 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl-----------------~v-f~~l~~~ 602 (659)
..+||-||.|.|=++-.|.+... .-+|..||+||.+++.|++-+.-..-.++ |. +-.-...
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP 152 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc
Confidence 46999999999998888888753 44799999999999999998731111122 21 1112233
Q ss_pred hHHHHHHHhhccCCCCcEEEec
Q 006149 603 QLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 603 ~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
+.-+..-.-| +++|.+++-
T Consensus 153 ~ip~~l~~qL---~~gGrLV~p 171 (209)
T PF01135_consen 153 EIPEALLEQL---KPGGRLVAP 171 (209)
T ss_dssp S--HHHHHTE---EEEEEEEEE
T ss_pred hHHHHHHHhc---CCCcEEEEE
Confidence 4445566678 899988763
No 379
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=91.94 E-value=0.49 Score=46.90 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC--------------CCCeeEE------ecc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--------------DKSLKVF------NHL 599 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~--------------d~rl~vf------~~l 599 (659)
+.-.++|-+|.|.|.|..-|..+. -+++++|+.|.-++.||+-.+-.+ +.+.|+. .+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGS
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcC
Confidence 445789999999999999999886 489999999999999998764221 1222332 344
Q ss_pred cch-h---HHHHHHHhhccCCCCcEEEecCc
Q 006149 600 FCL-Q---LEEDVNLVLFGLSSESCIKDNSF 626 (659)
Q Consensus 600 ~~~-~---f~~~~~~~Lf~~~~~g~~~~n~~ 626 (659)
... + +...+...| .|+|.++.=.+
T Consensus 120 ~~~~~L~~~l~~l~~~L---~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAAL---APGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTE---EEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHh---CCCCEEEEEEe
Confidence 432 2 344555566 99999888554
No 380
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=91.88 E-value=0.38 Score=48.95 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC---------CCCCe---------eEE------ec
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------QDKSL---------KVF------NH 598 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~---------~d~rl---------~vf------~~ 598 (659)
+-++=+|.|-|-.++-+..++ + +|.++|+.++++++|++++... +|+-. |+. +.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-K-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-h-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 468889999998888888886 3 7999999999999999999654 12211 332 23
Q ss_pred ccchhHHHHHHHhhccCCCCc-EEEe---c--C--chHHHHHHHhhc
Q 006149 599 LFCLQLEEDVNLVLFGLSSES-CIKD---N--S--FPEAAVQLGKLV 637 (659)
Q Consensus 599 l~~~~f~~~~~~~Lf~~~~~g-~~~~---n--~--~~~~~~~l~~~~ 637 (659)
..-..||..++++| +++| ++++ | . +++.-..+.++.
T Consensus 113 Fdle~fy~~~~rvL---Rk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 113 FDLERFYKEAYRVL---RKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred hchHHHHHHHHHHc---CCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 44778999999999 9888 6655 3 1 566555554443
No 381
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.86 E-value=0.63 Score=48.37 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=55.1
Q ss_pred CccchH-HHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCC
Q 006149 512 GYLASS-YHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQD 590 (659)
Q Consensus 512 ~~L~~~-Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d 590 (659)
.+|..+ ..+.|+..+-+ .....|+-||-|-|.|.+.|.+.. .++++||+|+..++.-++-|. .+
T Consensus 11 nFL~~~~~~~~Iv~~~~~-----------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~ 75 (262)
T PF00398_consen 11 NFLVDPNIADKIVDALDL-----------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SN 75 (262)
T ss_dssp SEEEHHHHHHHHHHHHTC-----------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TC
T ss_pred CeeCCHHHHHHHHHhcCC-----------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hc
Confidence 455433 55666654322 234689999999999999999988 699999999999999999888 67
Q ss_pred CCeeEE
Q 006149 591 KSLKVF 596 (659)
Q Consensus 591 ~rl~vf 596 (659)
+++.++
T Consensus 76 ~~~~vi 81 (262)
T PF00398_consen 76 PNVEVI 81 (262)
T ss_dssp SSEEEE
T ss_pred ccceee
Confidence 788777
No 382
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.71 E-value=0.93 Score=42.68 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=76.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 006149 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (659)
..++.++.. ++..+.+|+|.|.|+.....++.|...-+|++.++-.+...+-+..+.+ .+..|..-|+.+.++.+
T Consensus 62 ~nVLSll~~---n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLRG---NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHccC---CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345555554 6778999999999999999998886689999999988876655444333 56788888888877655
Q ss_pred CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-.+=+|+ ++-..+ ..+-..+..-|..|.+++..-+.
T Consensus 139 y~~vviF--gaes~m----------~dLe~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 139 YRNVVIF--GAESVM----------PDLEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred cceEEEe--ehHHHH----------hhhHHHHHhhCcCCCeEEEEecC
Confidence 4444444 322222 23344555567778887776654
No 383
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.63 E-value=0.28 Score=53.52 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=60.7
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCC-CCcccEEEecccccc
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFM-DETFDVILDKGGLDA 146 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~-~~sFDvVi~~g~l~~ 146 (659)
.-|||||.|||.++...+..|...||+++.-..|.+.|++....++ .+|+++.---++.... ...-|+++..-..--
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE 147 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE 147 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence 4699999999999998888887789999999999998877655444 5666654433333211 123555553322222
Q ss_pred cCCcccchHHHHHHHHHHHhccccC
Q 006149 147 LMEPELGHKLGNQYLSEVKRLLKSG 171 (659)
Q Consensus 147 l~~~~~~~~~~~~~l~ei~rvLkpG 171 (659)
+.... +-.-+++.++.|...
T Consensus 148 ligeG-----alps~qhAh~~L~~~ 167 (636)
T KOG1501|consen 148 LIGEG-----ALPSLQHAHDMLLVD 167 (636)
T ss_pred hhccc-----cchhHHHHHHHhccc
Confidence 21111 224466666665443
No 384
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=91.61 E-value=0.53 Score=47.27 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=38.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||=||.|.|.+...+... ..++++||++|.+++.|++.+.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH
Confidence 4579999999999999999875 3589999999999999998763
No 385
>PRK04266 fibrillarin; Provisional
Probab=91.60 E-value=1.1 Score=45.60 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=54.4
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHH----HHHhhcCCC------C--------CCCeeEE-ecccc-
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN----LAEDYFGFT------Q--------DKSLKVF-NHLFC- 601 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~----vA~~~Fgl~------~--------d~rl~vf-~~l~~- 601 (659)
..+||=+|.|.|.+...|....+.-+|.+||+++.+++ .|++.-+.. . .+.+|+. .++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p 152 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQP 152 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCCh
Confidence 36899999999999999999887568999999997776 444321110 0 1224443 22322
Q ss_pred ---hhHHHHHHHhhccCCCCcEEEe
Q 006149 602 ---LQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 602 ---~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
..+.+.++++| +|+|.+++
T Consensus 153 ~~~~~~L~~~~r~L---KpGG~lvI 174 (226)
T PRK04266 153 NQAEIAIDNAEFFL---KDGGYLLL 174 (226)
T ss_pred hHHHHHHHHHHHhc---CCCcEEEE
Confidence 12467888899 99998776
No 386
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=91.55 E-value=0.57 Score=49.67 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-CCCeeEE
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVF 596 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl~vf 596 (659)
..+||=||-|.|.|...|.... .++++||||+.+++.+++.|.-.. .+++.++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii 90 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI 90 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3589999999999999998864 479999999999999998874321 3456554
No 387
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.52 E-value=1.4 Score=48.37 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCCCcccEEEecccccccCCcccc--------------------h-----------HHHHHHHHHHHhccccCeEEEEE
Q 006149 129 QFMDETFDVILDKGGLDALMEPELG--------------------H-----------KLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 129 ~~~~~sFDvVi~~g~l~~l~~~~~~--------------------~-----------~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
-||.++.+++++..++||+..-..+ + .++..+|+.=.+-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 4889999999999999998732111 0 11445555556778899999998
Q ss_pred EcCCc
Q 006149 178 TLAES 182 (659)
Q Consensus 178 ~~~~~ 182 (659)
.++.+
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 87754
No 388
>PRK06202 hypothetical protein; Provisional
Probab=91.39 E-value=0.36 Score=49.02 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhh----CCCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~----~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+.+||=||.|.|.++..|... .|+.++++||++|.+++.|++-.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 45679999999999998888754 45679999999999999999865
No 389
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.34 E-value=1.7 Score=44.87 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-------CCCcEEEEeecCCCC---CCCCc-ccE
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------RSDMRWRVMDMTSMQ---FMDET-FDV 137 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-------~~~i~~~~~D~~~l~---~~~~s-FDv 137 (659)
..+||++|.|+|..+..++.....+|+..|....+.. +......+ +..+.....+..+.+ +-... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 5679999999998788777765568999998765443 33221111 124555555544432 22233 999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++..+++.-...+ .++.-+..+|..+|.+++...-
T Consensus 166 ilasDvvy~~~~~e-------~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 166 ILASDVVYEEESFE-------GLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEeeeeecCCcch-------hHHHHHHHHHhcCCeEEEEEec
Confidence 99999888765544 7888888899988866555544
No 390
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=1.4 Score=46.50 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=70.6
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCC---------------eeEE-------ec-c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS---------------LKVF-------NH-L 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~r---------------l~vf-------~~-l 599 (659)
.+||=+|.|.|.|--.+.+..|..+++.||+|..-++.||+=.-...-++ +|.. +. -
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~~ 239 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGKA 239 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCcc
Confidence 49999999999999999999999999999999999999998764321111 1211 11 1
Q ss_pred c----chhHHHHHHHhhccCCCCc--EEEecCchHHHHHHHhhcc
Q 006149 600 F----CLQLEEDVNLVLFGLSSES--CIKDNSFPEAAVQLGKLVK 638 (659)
Q Consensus 600 ~----~~~f~~~~~~~Lf~~~~~g--~~~~n~~~~~~~~l~~~~~ 638 (659)
. ..++.+...+.| +++| -+++|.+......|+++.+
T Consensus 240 v~~~~~~~~i~~A~~~L---~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 240 VVHSLAQEIIAAAARHL---KPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred hhHHHHHHHHHHHHHhh---ccCCEEEEEEcCCCChHHHHHHhcC
Confidence 2 348889999999 9999 4577987777666666543
No 391
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.27 E-value=1.6 Score=49.79 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=63.5
Q ss_pred CCCCeEEEECCCcch-HHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-----------CC----
Q 006149 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-----------MQ---- 129 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~-~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-----------l~---- 129 (659)
.++.+|+.+|||.=. .+...++. |. .|+++|.++..++++.. . ..++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes-l-----GA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES-M-----GAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c-----CCeEEEeccccccccccchhhhcchhHH
Confidence 478999999999844 45555554 76 89999999988876643 2 12322222211 10
Q ss_pred ------CCC--CcccEEEecccccccCCcccchHHHHHH-HHHHHhccccCeEEEEEEcC
Q 006149 130 ------FMD--ETFDVILDKGGLDALMEPELGHKLGNQY-LSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 130 ------~~~--~sFDvVi~~g~l~~l~~~~~~~~~~~~~-l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.+ ..+|+|+.......-..+ .+ .++..+.+||||+++.+...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP--------~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAP--------KLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCc--------chHHHHHHHhcCCCCEEEEEccC
Confidence 111 368999975544322122 34 49999999999999888753
No 392
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=91.14 E-value=0.8 Score=49.02 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=56.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHH---HHHhhcCCC--------------CCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFT--------------QDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~---vA~~~Fgl~--------------~d~rl~vf------~~ 598 (659)
.++||=||.|.|.+...+....+. .+++||+++.++. .++++++.. ..+..|+. .|
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 479999999999998888877665 7999999998875 344554321 12233433 33
Q ss_pred cc-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+- -..+...++++| +++|.++...
T Consensus 201 ~~dp~~~L~el~r~L---kpGG~Lvlet 225 (314)
T TIGR00452 201 RKSPLEHLKQLKHQL---VIKGELVLET 225 (314)
T ss_pred cCCHHHHHHHHHHhc---CCCCEEEEEE
Confidence 32 236888999999 9999887643
No 393
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=91.11 E-value=0.4 Score=49.62 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=+|.|.|+++..+.+.+|..++++||+||..+++|++-+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 45899999999999999999999889999999999999999754
No 394
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.04 E-value=0.55 Score=48.48 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=51.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-C--------CCeEEEEcCCHHHHHHHHHHhhcC-------CCCcEEEEeecCCCCCCC
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-G--------FHGITNVDFSKVVISDMLRRNVRD-------RSDMRWRVMDMTSMQFMD 132 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g--------~~~VtgvD~S~~~i~~~~~~~~~~-------~~~i~~~~~D~~~l~~~~ 132 (659)
+.+|+|+|+|+|.++..+.+. . ..+++-||.|+.+.+..+++.... ..++.| ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 479999999999999888764 1 247999999998887666665442 234566 23443333
Q ss_pred CcccEEEecccccccCCc
Q 006149 133 ETFDVILDKGGLDALMEP 150 (659)
Q Consensus 133 ~sFDvVi~~g~l~~l~~~ 150 (659)
..-+|+++..||+++..
T Consensus 95 -~~~~iiaNE~~DAlP~~ 111 (252)
T PF02636_consen 95 -FPGFIIANELFDALPVD 111 (252)
T ss_dssp -CCEEEEEESSGGGS--E
T ss_pred -CCEEEEEeeehhcCcee
Confidence 45778999999998643
No 395
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=90.87 E-value=0.64 Score=51.44 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=40.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||=||.|.|.++..+...+|..++++||++|.++++|++-.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5899999999999999999899999999999999999998764
No 396
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.82 E-value=0.63 Score=51.04 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--C-CcEEEEeecCCCC-CCCCcccEEEecc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--S-DMRWRVMDMTSMQ-FMDETFDVILDKG 142 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~-~i~~~~~D~~~l~-~~~~sFDvVi~~g 142 (659)
+.+|||.=+|+|.=+...+.. +...|+.-|+|+.+++.+++....++ . .+++.++|+..+= .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 469999999999888777665 55799999999999998866544443 2 4788888887742 2467899984
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
+|-+.++. .++..+.+.++.||.+.+..
T Consensus 127 -lDPfGSp~-------pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 -LDPFGSPA-------PFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -E--SS--H-------HHHHHHHHHEEEEEEEEEEE
T ss_pred -eCCCCCcc-------HhHHHHHHHhhcCCEEEEec
Confidence 56666654 89999999999999887765
No 397
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=90.81 E-value=0.43 Score=50.22 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=40.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||=||.|.|.++..+...+|+.++++||+++..+++|++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999854
No 398
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=90.77 E-value=0.72 Score=49.48 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 587 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl 587 (659)
+...++|=||-|+|++.-.|....++.+++++||||..++.|++-...
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 356799999999887777777667788999999999999999977644
No 399
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.76 E-value=0.56 Score=47.88 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=46.3
Q ss_pred CeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH---HHhhcCC-------CCcEEEEeecCCC-CCCCCcccEE
Q 006149 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-------SDMRWRVMDMTSM-QFMDETFDVI 138 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~---~~~~~~~-------~~i~~~~~D~~~l-~~~~~sFDvV 138 (659)
.+|||.-||-|..+..++..|. +|++++-|+.+-.-.. +++.... .+|+++.+|..++ +.++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 5999999999999999998887 8999999986544332 3332222 2689999998874 5567899999
Q ss_pred Eecccccc
Q 006149 139 LDKGGLDA 146 (659)
Q Consensus 139 i~~g~l~~ 146 (659)
+.-.++.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 97666654
No 400
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.67 E-value=0.84 Score=48.50 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhh
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~ 584 (659)
.+.+||=+|.|.|..+..|...++ ..++++|||++++++.|++.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~ 107 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence 346899999999999999998886 57999999999999988764
No 401
>PRK14968 putative methyltransferase; Provisional
Probab=90.61 E-value=0.45 Score=46.10 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=37.2
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||.+|.|.|.+...+... ..+++++|++|.+++.|++.+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHH
Confidence 468999999999999999887 479999999999999997665
No 402
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.58 E-value=1.6 Score=42.73 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTM 577 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V 577 (659)
...+||.||.|.|.+...+...+ +..+|++||++|..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 34689999999999999888776 56789999999954
No 403
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.35 E-value=1.1 Score=45.35 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC-----------------CCCCeeEE------e
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVF------N 597 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~-----------------~d~rl~vf------~ 597 (659)
...+||-||.|.|.+...+.... .+++++|+++..++.|++.+... .+...|+. .
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 35689999999999998888763 57999999999999998765311 11122332 2
Q ss_pred cc-cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL-FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l-~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ ...++.+.+.+.| +++|.+....
T Consensus 126 ~~~~~~~~l~~~~~~L---~~gG~l~v~~ 151 (233)
T PRK05134 126 HVPDPASFVRACAKLV---KPGGLVFFST 151 (233)
T ss_pred ccCCHHHHHHHHHHHc---CCCcEEEEEe
Confidence 22 2345668888899 9999887654
No 404
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.18 E-value=0.83 Score=45.39 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH
Q 006149 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (659)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~ 108 (659)
...+...+.+... .+++.|||.-||+|..+......|- +.+|+|+++..++.+.
T Consensus 177 P~~l~~~lI~~~t----~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 177 PVELIERLIKAST----NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -HHHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhhh----ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhc
Confidence 3445555555555 4789999999999999988888875 8999999999988664
No 405
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.12 E-value=1.6 Score=47.76 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-----C-CC-CCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-----M-QF-MDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~-----l-~~-~~~sFDv 137 (659)
.++.+||..|||. |..+..+++. |...|+++|.++..++.+++.. ...++...-.+ + .+ ....+|+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~-----~~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL-----GAETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-----CcEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 4678999999988 8888888876 6556999999998777654431 11222111110 0 11 2236999
Q ss_pred EEecccccc-------c------CCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 138 ILDKGGLDA-------L------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 138 Vi~~g~l~~-------l------~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|++.-.-.. + ...+ -...+.++.+.|+++|+++....
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETD-----RPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccccccC-----chHHHHHHHHHhccCCEEEEEcC
Confidence 997432110 0 0000 12578889999999999988864
No 406
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.03 E-value=2.3 Score=45.97 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCeEEEECCCcchHHHHHHHcCC-----CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC---------
Q 006149 66 SSPPPQILVPGCGNSRLSEHLYDAGF-----HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--------- 129 (659)
Q Consensus 66 ~~~~~~ILDiGCG~G~~s~~La~~g~-----~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--------- 129 (659)
.+|+.+|||+.+..|.-+..|.+..+ +.|++=|++..-+....... ... +++.+...|+..+|
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH-hccCCcceeeecccceeccccccccCch
Confidence 46899999999999999988877522 26999999987776554444 222 34445555554443
Q ss_pred CCCCcccEEEec------ccccccCCcccc-h---------HHHHHHHHHHHhccccCeEEEEEEcCCchhhc
Q 006149 130 FMDETFDVILDK------GGLDALMEPELG-H---------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (659)
Q Consensus 130 ~~~~sFDvVi~~------g~l~~l~~~~~~-~---------~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~~~ 186 (659)
.....||-|++- |++....+.... + ..--++|.+-.++||+||+++-+|.+-..+..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 123469999842 222221111100 1 12457889999999999999999988666554
No 407
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=90.03 E-value=1.8 Score=45.63 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 006149 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (659)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g--~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (659)
+.+.......+.. .++...+|.--|.|..+..+.... .++++|+|-.+.+|+.++++...-.+++++++.++.++
T Consensus 9 pVLl~E~i~~L~~---~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 9 PVLLNEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred chHHHHHHHhccc---CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3444445555554 688999999999999999988873 36799999999999999888866667888888877665
No 408
>PRK11524 putative methyltransferase; Provisional
Probab=89.95 E-value=0.97 Score=47.61 Aligned_cols=56 Identities=20% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhh
Q 006149 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (659)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~ 112 (659)
.+...+.+... .+++.|||.-||+|..+....+.|- +.+|+|+++..++.+++|..
T Consensus 196 ~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34444444444 4899999999999999988877774 89999999999998888863
No 409
>PHA03412 putative methyltransferase; Provisional
Probab=89.89 E-value=0.46 Score=48.55 Aligned_cols=44 Identities=27% Similarity=0.230 Sum_probs=38.7
Q ss_pred CCeEEEEccCcchHHHHHHhhC---CCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~---p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|.|.|.++..+.+.. +..+|++||||+..+++|++-+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~ 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc
Confidence 4699999999999999998764 3579999999999999999764
No 410
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=89.36 E-value=0.64 Score=46.76 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=38.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
...+||-||.|.|.+...|.... .++++||+++.+++.|++.+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH
Confidence 34689999999999999998765 469999999999999999874
No 411
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=89.29 E-value=1.2 Score=46.24 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHH-HHHHhhcCCCCCCCeeEE
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~-~vA~~~Fgl~~d~rl~vf 596 (659)
.+--||-||-|.|.|..-|...- .+|.+||+||.++ ++.++.=|.+...+++|+
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 44579999999999999999875 5899999999876 466666688866777655
No 412
>PRK05785 hypothetical protein; Provisional
Probab=89.14 E-value=0.7 Score=46.98 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=55.6
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcC--------CC-CCCCeeEE------ecc-cchhH
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--------FT-QDKSLKVF------NHL-FCLQL 604 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fg--------l~-~d~rl~vf------~~l-~~~~f 604 (659)
.+.+||=||.|.|.+...|.+.+ +.+|++||+++.++++|++--. ++ +|...|+. .++ .-...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~ 129 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKV 129 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHH
Confidence 35799999999999999999887 4699999999999999986421 11 23344544 222 23457
Q ss_pred HHHHHHhhccCCCCc
Q 006149 605 EEDVNLVLFGLSSES 619 (659)
Q Consensus 605 ~~~~~~~Lf~~~~~g 619 (659)
...++++| ++..
T Consensus 130 l~e~~RvL---kp~~ 141 (226)
T PRK05785 130 IAEFTRVS---RKQV 141 (226)
T ss_pred HHHHHHHh---cCce
Confidence 78899999 8854
No 413
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=88.94 E-value=0.6 Score=49.13 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=38.8
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
+||=||-|.|+++-.|.+.+|+.+|+++||+|.-+++|++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999653
No 414
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.93 E-value=0.38 Score=45.97 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcE-EEEeecCCC-CCCCCcccEEEecccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMR-WRVMDMTSM-QFMDETFDVILDKGGLDA 146 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~-~~~~D~~~l-~~~~~sFDvVi~~g~l~~ 146 (659)
+.+.+.+|...=-.-....++|.++|..|+.++--|. +.. ..++. +...|+..- .--.++||++.+.++++|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~---~~~---~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ---EEF---RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC---ccc---ccccccccHHHHHHHHHHhhccchhhheechhcc
Confidence 4577888877433323333558888999998762221 111 12222 122222211 112478999999999987
Q ss_pred cCCcc----cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 147 LMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 147 l~~~~----~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
..-.. -++..-.+.+.++.++||+||.+++..+.
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 65211 11233568899999999999999988764
No 415
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=88.91 E-value=2 Score=43.76 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=64.3
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCCCCCe---------------------eEE--
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSL---------------------KVF-- 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~d~rl---------------------~vf-- 596 (659)
+-+|-||-|.|.....+....|+..+.+||+-..++.-|-+.. +++ +-|+ .++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5799999999999999999999999999999999998887776 331 1111 122
Q ss_pred ----------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 ----------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 ----------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..|...+|.+.+.++| +++|.+-.-+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~L---k~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKL---KPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHc---cCCCEEEEEe
Confidence 2389999999999999 9999886644
No 416
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=88.90 E-value=1.9 Score=46.27 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=56.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHH---HHhhcCC--------------CCCCCeeEE------ec
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGF--------------TQDKSLKVF------NH 598 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~v---A~~~Fgl--------------~~d~rl~vf------~~ 598 (659)
.++||=||.|.|.+...+....+. .|++||+++.++.- .+++.+. +.+...|+. .|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence 479999999999999988888776 69999999987753 2344432 112233332 33
Q ss_pred cc-chhHHHHHHHhhccCCCCcEEEecC
Q 006149 599 LF-CLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 599 l~-~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
+. -..+...++++| +++|.++...
T Consensus 202 ~~dp~~~L~~l~~~L---kpGG~lvl~~ 226 (322)
T PRK15068 202 RRSPLDHLKQLKDQL---VPGGELVLET 226 (322)
T ss_pred cCCHHHHHHHHHHhc---CCCcEEEEEE
Confidence 32 357788999999 9999887643
No 417
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.75 E-value=0.75 Score=45.25 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.9
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.|+=+|.|.|.|.--+.-..|. +|.+|||||+.+++|++--
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~ 88 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANA 88 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHH
Confidence 56999999999999888877776 9999999999999998654
No 418
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.71 E-value=0.2 Score=44.88 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=32.0
Q ss_pred cccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 134 sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
.||+|+|-.+--++- ...++.++..+++.+++.|+|||+|++--
T Consensus 1 ~yDvilclSVtkWIH-Ln~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIH-LNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEE-ecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999877655432 12344559999999999999999998864
No 419
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.66 E-value=1.8 Score=45.77 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccccc
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l~ 145 (659)
++.++|-+|||. |.++..+++. |...|+++|.++.-++.+.+. .+ .|..+. ....||+|++.-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~~--i~~~~~--~~~g~Dvvid~~G-- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------EV--LDPEKD--PRRDYRAIYDASG-- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------cc--cChhhc--cCCCCCEEEECCC--
Confidence 467899999874 4455666665 776688889888655433211 01 111110 1346899986422
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
. ...+..+.+.|+++|++++....
T Consensus 210 ---~--------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 210 ---D--------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ---C--------HHHHHHHHHhhhcCcEEEEEeec
Confidence 1 14578888999999999987653
No 420
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.62 E-value=0.91 Score=45.12 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=60.5
Q ss_pred eEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc---CCCC-----------------CCCe-eEE------
Q 006149 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ-----------------DKSL-KVF------ 596 (659)
Q Consensus 544 ~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F---gl~~-----------------d~rl-~vf------ 596 (659)
-+|=||-|.|.....+....|+..+.+||+....+.-|.+.. ++.. +..+ .+|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 688999999999999999999999999999999998776654 3321 1112 222
Q ss_pred --------ecccchhHHHHHHHhhccCCCCcEEEecC
Q 006149 597 --------NHLFCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 597 --------~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..|++.+|.+.+.++| +++|.+..-+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L---~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVL---KPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHE---EEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHc---CCCCEEEEEe
Confidence 2389999999999999 9999775533
No 421
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.62 E-value=0.97 Score=41.81 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=43.0
Q ss_pred EEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 545 vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
++=||.|.|..+.++...+|..++.+||.||...+.+++.+....-+++.++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~ 53 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLL 53 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 5779999999999999999988999999999999999998854322345444
No 422
>PRK13699 putative methylase; Provisional
Probab=88.49 E-value=1.5 Score=44.68 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~ 113 (659)
.+++.|||.-||+|..+......|- +.+|+|+++...+.+.++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 4789999999999999988877775 899999999999988777643
No 423
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=2.6 Score=42.25 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.++.-+|..++|..++-+ ....+||-||-|.|=.+-.|.+..- +|..||+++...+-|++-|
T Consensus 53 qtis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L 114 (209)
T COG2518 53 QTISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNL 114 (209)
T ss_pred ceecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHH
Confidence 345566766666443221 3447999999999988888887753 8999999999999999876
No 424
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=88.20 E-value=5.4 Score=39.26 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=66.4
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh---hcCCCCCCCeeEE--------------ec------c
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED---YFGFTQDKSLKVF--------------NH------L 599 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~---~Fgl~~d~rl~vf--------------~~------l 599 (659)
.+++=||.|.|+++-.+....|..++.++|-|++.+++.++ -||++ ++.+. +. .
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~---n~~vv~g~Ap~~L~~~~~~daiFIGGg~ 112 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD---NLEVVEGDAPEALPDLPSPDAIFIGGGG 112 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC---cEEEEeccchHhhcCCCCCCEEEECCCC
Confidence 47888999999999999999999999999999999998764 47754 22111 11 2
Q ss_pred cchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc
Q 006149 600 FCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK 638 (659)
Q Consensus 600 ~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~ 638 (659)
--.+..+.|...| +++|-++.|. +......++.+.+
T Consensus 113 ~i~~ile~~~~~l---~~ggrlV~naitlE~~~~a~~~~~~ 150 (187)
T COG2242 113 NIEEILEAAWERL---KPGGRLVANAITLETLAKALEALEQ 150 (187)
T ss_pred CHHHHHHHHHHHc---CcCCeEEEEeecHHHHHHHHHHHHH
Confidence 3456677888888 9999999988 3444444444444
No 425
>PHA03411 putative methyltransferase; Provisional
Probab=87.86 E-value=0.99 Score=47.23 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|-|.|.+...+.+..+..+|++||++|.++++|++-+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC
Confidence 46899999999999888887776679999999999999998754
No 426
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.80 E-value=4.1 Score=42.36 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--------CCCCCcc
Q 006149 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--------QFMDETF 135 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--------~~~~~sF 135 (659)
...|+.+|||-=.-...+.......++-+|.-+ +++ .+++... ...+.+++.+|+... .|..+..
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~-~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLA-FKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHH-HHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999976666666322213566666655 333 3333322 235788899998621 1333445
Q ss_pred cEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 136 DvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-++++.|++.++...+ +.++|+.+.+...||+.+++-...
T Consensus 160 tl~i~EGvl~YL~~~~-----v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEA-----VDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeeecchhhcCCHHH-----HHHHHHHHHHhCCCCcEEEEEecc
Confidence 6888999999987655 789999999988899888876654
No 427
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=87.74 E-value=1.7 Score=43.48 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC------------------CCCeeEE------
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ------------------DKSLKVF------ 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~------------------d~rl~vf------ 596 (659)
.+.+||-||.|.|.+...+.... .+++++|+++.+++.|++.+.-.. ....|+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999988887754 469999999999999988653211 0123332
Q ss_pred ecc-cchhHHHHHHHhhccCCCCcEEEec
Q 006149 597 NHL-FCLQLEEDVNLVLFGLSSESCIKDN 624 (659)
Q Consensus 597 ~~l-~~~~f~~~~~~~Lf~~~~~g~~~~n 624 (659)
.++ ....+.+.+.++| +++|.+...
T Consensus 123 ~~~~~~~~~l~~~~~~L---~~gG~l~i~ 148 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLL---KPGGILFFS 148 (224)
T ss_pred HhCCCHHHHHHHHHHhc---CCCcEEEEE
Confidence 122 2345667888889 999977653
No 428
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=87.64 E-value=2 Score=47.01 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=72.4
Q ss_pred ceeEEEeCCCCCCeeEEEEEEEeCCCCCC--------CCcccEEEEEeeCCCccccccC-ChhhH----HHHHHhcCCCE
Q 006149 292 CRFELILGGEGDFCFSYRAVLLDARENSG--------PFMYNCGVFIVPKTRAHEWLFS-SEEGQ----WLVVESSKAAR 358 (659)
Q Consensus 292 ~~~~~~l~~~~~~~~~y~~~v~D~~~~~~--------~~~~~~a~fiVP~gre~ewlfs-t~eG~----~~l~~sa~~~R 358 (659)
|.+++++.....+.+.|++.++|+|..+. ..+--+||++|+- +..||==+ ..+|| --|+...|.+.
T Consensus 69 rGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a-~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 69 RGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDA-RDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred cceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEEC-CCCccccccccCCchhHHHHHHHhcCCce
Confidence 55888888766677778888999998652 2223478777764 33443222 22332 35788889999
Q ss_pred EEEEEeCCCCC---CCchHHHHHhhhHHHHhcCCCCCCCCCCccEEec----CCCcceee
Q 006149 359 LIMVLLDTSHA---SASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMA----GDGIKHRN 411 (659)
Q Consensus 359 li~v~l~~~~~---~~~~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~----~~~i~~r~ 411 (659)
||+..---+-. -+-.++|+++++.++..+ .-. ..+|||+-+ |+++..+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~-G~~---~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMV-GYN---PKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHc-CCC---ccCCeEEecccccCCcccccC
Confidence 99987433322 223689999999965554 222 125665542 67777666
No 429
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.56 E-value=2.1 Score=46.23 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCeEEEECCCcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCCC-CCCcccEEEeccccc
Q 006149 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~~-~~~sFDvVi~~g~l~ 145 (659)
..+|||.=+|+|.=+...+.. +...|+.-|+|+.+++-+++....+ ..+...+..|+..+-. ....||+|= +|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID----iD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID----ID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----cC
Confidence 679999999999988777765 4448999999999999887666555 3455666677766522 136799873 56
Q ss_pred ccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 146 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
-+.++. .++....+.++.||++.+.-
T Consensus 129 PFGSPa-------PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPA-------PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCc-------hHHHHHHHHhhcCCEEEEEe
Confidence 666665 78888999999999876643
No 430
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=87.48 E-value=3.2 Score=41.88 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=35.1
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..+||++|-|-|--+.+|..+ +.+|++||+.|..++.|.+
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHH
Confidence 469999999999999999986 3689999999999997643
No 431
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=87.31 E-value=1.4 Score=47.20 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=54.9
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChh-HHHHHHhh-cCCC--------CCCCeeEE------eccc---chh
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT-MLNLAEDY-FGFT--------QDKSLKVF------NHLF---CLQ 603 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~-V~~vA~~~-Fgl~--------~d~rl~vf------~~l~---~~~ 603 (659)
.-.+=+|+|.|.+.+.|..+||. |+.|+.|.. |++.|..+ .|.. +-|.-+++ .|+. ...
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk 256 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK 256 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence 45677999999999999999987 788888855 55555555 2311 11222333 4553 678
Q ss_pred HHHHHHHhhccCCCCcEE--EecCch
Q 006149 604 LEEDVNLVLFGLSSESCI--KDNSFP 627 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~--~~n~~~ 627 (659)
|...|+..| .|+|.+ +.|..+
T Consensus 257 iLknC~~sL---~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 257 ILKNCKKSL---PPGGKIIVVENVTP 279 (342)
T ss_pred HHHHHHHhC---CCCCEEEEEeccCC
Confidence 999999999 999955 346544
No 432
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.21 E-value=3.9 Score=43.11 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC------CCCCCcccEE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM------QFMDETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l------~~~~~sFDvV 138 (659)
.++.+||..|||. |..+..+++. |. +|++++.++...+.+++ . + +..+..+-... ......+|+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~-~---g--~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE-L---G--ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH-h---C--CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 4678999988873 6777777775 65 79999999987776533 2 1 11111111110 1234578988
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++.... ...+.++.+.|+++|+++.....
T Consensus 237 id~~g~-------------~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 237 FDFVGT-------------QPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEECCC
Confidence 853211 15688889999999999987653
No 433
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=87.11 E-value=3.1 Score=42.04 Aligned_cols=40 Identities=20% Similarity=0.069 Sum_probs=34.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..+||++|-|-|.-+.+|..+ +.+|++||+.|.-++-|.+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~ 77 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA 77 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH
Confidence 469999999999999999986 4689999999999987643
No 434
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=86.79 E-value=2.2 Score=45.63 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHH-------HHhhc---CCCCcEEEEeecCCCCCC-CCcc
Q 006149 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML-------RRNVR---DRSDMRWRVMDMTSMQFM-DETF 135 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~-------~~~~~---~~~~i~~~~~D~~~l~~~-~~sF 135 (659)
.+++-|+|.--|||.+....+..|. -|+|.||+-.++...+ ..+.+ ...-+.++.+|..+.++. ...|
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 6899999999999999988888876 8999999987665211 11111 112367788999887653 4689
Q ss_pred cEEEeccccc------------------------ccCCcccc--hHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 136 DVILDKGGLD------------------------ALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 136 DvVi~~g~l~------------------------~l~~~~~~--~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
|.|+|-.... |++....- ...+...+.-+.+.|..||++++.-.
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 9999743221 11111000 01267788888999999999998764
No 435
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=86.77 E-value=1.7 Score=48.16 Aligned_cols=115 Identities=13% Similarity=-0.000 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchHHH--HHHHcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC--CCCCC-CcccEE
Q 006149 67 SPPPQILVPGCGNSRLSE--HLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS--MQFMD-ETFDVI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~~s~--~La~~g-~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~--l~~~~-~sFDvV 138 (659)
...+.++|+|.|.|.-.- .+...+ ...++.||-|..|........+... ..+.....-+.+ +|.+. ..||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 345788888887665443 222232 4579999999999886644333211 111111111221 24333 459999
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcCCchh
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~~~~ 184 (659)
++.+.++.+.+.. ......-..|.+..++||.++++.-+..--
T Consensus 279 i~ah~l~~~~s~~---~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 279 ICAHKLHELGSKF---SRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred EeeeeeeccCCch---hhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 9999999987655 234455667888899999999999775443
No 436
>PTZ00357 methyltransferase; Provisional
Probab=86.56 E-value=2.2 Score=49.42 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=64.4
Q ss_pred CeEEEECCCcchHHHHHHHc----CC-CeEEEEcCCHHHHHHHHHH--hh-cC-------CCCcEEEEeecCCCCCCC--
Q 006149 70 PQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRR--NV-RD-------RSDMRWRVMDMTSMQFMD-- 132 (659)
Q Consensus 70 ~~ILDiGCG~G~~s~~La~~----g~-~~VtgvD~S~~~i~~~~~~--~~-~~-------~~~i~~~~~D~~~l~~~~-- 132 (659)
..|+.+|+|-|-+.....+. +. -+|++|+-++.++...+.+ +. .. +..|+++..||.....+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36999999999986544432 32 3799999996533222222 21 12 345899999999974331
Q ss_pred ---------CcccEEEecccccccCCcccchHHHHHHHHHHHhcccc----CeE
Q 006149 133 ---------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS----GGK 173 (659)
Q Consensus 133 ---------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkp----GG~ 173 (659)
+.+|+|++. .|..+.+.+.. ...|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELS----PECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELS----PECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCC----HHHHHHHHHhhhhhcccccc
Confidence 379999974 45556666643 3667777777765 675
No 437
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.47 E-value=1 Score=47.72 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=61.2
Q ss_pred CCCeEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC---CCC---ee-------------EEeccc
Q 006149 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---DKS---LK-------------VFNHLF 600 (659)
Q Consensus 541 ~~~~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~---d~r---l~-------------vf~~l~ 600 (659)
...+|||+|.| -|.+.....+.+.-.+|.++|+++.=+++||+ ||... +.. .+ .++..|
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 34689999999 89999999999988899999999999999999 99862 111 10 122222
Q ss_pred -chhHHHHHHHhhccCCCCcEEEe
Q 006149 601 -CLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 601 -~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
+.-+.--++.++.|++.+|.++.
T Consensus 248 dCsG~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 248 DCSGAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EccCchHHHHHHHHHhccCCEEEE
Confidence 34444566777888899997544
No 438
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=85.89 E-value=2.2 Score=45.18 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=51.1
Q ss_pred cceecCCc-c---chHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHH
Q 006149 506 QLKVYHGY-L---ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA 581 (659)
Q Consensus 506 ~~~~d~~~-L---~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA 581 (659)
.+.+||+. . .++=+++++..+. ... ....+||=+|-|.|.|+......... +|.+|||||.-++.|
T Consensus 131 ~I~idPg~AFGTG~H~TT~lcl~~l~---~~~------~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a 200 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPTTRLCLELLE---KYV------KPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAA 200 (295)
T ss_dssp EEEESTTSSS-SSHCHHHHHHHHHHH---HHS------STTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHH
T ss_pred EEEECCCCcccCCCCHHHHHHHHHHH---Hhc------cCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHH
Confidence 46688743 2 2445555544322 211 23469999999999999999987654 899999999999999
Q ss_pred HhhcCC
Q 006149 582 EDYFGF 587 (659)
Q Consensus 582 ~~~Fgl 587 (659)
++-.-+
T Consensus 201 ~~N~~~ 206 (295)
T PF06325_consen 201 RENAEL 206 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988743
No 439
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.87 E-value=6.3 Score=36.95 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=53.7
Q ss_pred eEEEECCCcch---HHHHHHHcCCCeEEEEcCC--HHHHHHHHHHhhcCCCCcEEEEeecCCCC----------CCCCcc
Q 006149 71 QILVPGCGNSR---LSEHLYDAGFHGITNVDFS--KVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------FMDETF 135 (659)
Q Consensus 71 ~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S--~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----------~~~~sF 135 (659)
.+|-.|+++|. ++..|++.|...|+.+.-+ ....+.........+.++.++.+|+.+.. -..+.+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l 81 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL 81 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67888888662 4566666766688999988 66666665655556688999999988752 123679
Q ss_pred cEEEecccccc
Q 006149 136 DVILDKGGLDA 146 (659)
Q Consensus 136 DvVi~~g~l~~ 146 (659)
|+++.......
T Consensus 82 d~li~~ag~~~ 92 (167)
T PF00106_consen 82 DILINNAGIFS 92 (167)
T ss_dssp SEEEEECSCTT
T ss_pred ccccccccccc
Confidence 99997655544
No 440
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.64 E-value=4 Score=43.82 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCcch-HHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEeccc
Q 006149 67 SPPPQILVPGCGNSR-LSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (659)
Q Consensus 67 ~~~~~ILDiGCG~G~-~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~ 143 (659)
.++++||.+|||.=. ++..+++. |..+|+++|.++.-++.+++ + . . .... + ++. ....+|+|++.-.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~-~-~~~~-~--~~~-~~~g~d~viD~~G 231 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D-E-TYLI-D--DIP-EDLAVDHAFECVG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C-c-eeeh-h--hhh-hccCCcEEEECCC
Confidence 468899999997533 33455553 45589999999876665432 1 1 1 1111 1 111 1124899986332
Q ss_pred ccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
-. . ....+....+.|++||++++....
T Consensus 232 ~~-----~-----~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 232 GR-----G-----SQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CC-----c-----cHHHHHHHHHhCcCCcEEEEEeec
Confidence 11 0 125688889999999999987653
No 441
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=85.05 E-value=3 Score=44.36 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred CCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe---ecCCCCCCCCcccEEEecc
Q 006149 68 PPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM---DMTSMQFMDETFDVILDKG 142 (659)
Q Consensus 68 ~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~---D~~~l~~~~~sFDvVi~~g 142 (659)
++.+||..|||. |..+..+++. |...|++++.++...+.+. ... .. .++.. +........+.+|+|++..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g--~~--~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMG--AD--ETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcC--CC--EEEcCCchhhhhhhccCCCccEEEECC
Confidence 678999999876 6666667665 6657999999987776432 221 11 11111 1111111223589998642
Q ss_pred cccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.. ...++.+.+.|+++|+++....
T Consensus 240 g~-------------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 240 GA-------------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 21 1457888899999999987653
No 442
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=84.98 E-value=7.7 Score=38.86 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCeEEEEccCcchHHHHHHhhC-CCccEEEEecCh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDL 575 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp 575 (659)
..+||=||.|.|.....+.+.. +..+|++||++|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 4589999999999999998876 456999999997
No 443
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=84.42 E-value=2.4 Score=44.48 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCeEEEEccCcchHHHHHH--hhCCCccEEEEecChhHHHHHHhhcC
Q 006149 541 KSVKAVVIGLGAGLLPMFLH--ECMPFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~--~~~p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.|.+|+.||.|.==|...+. .+.+.+.++++|+||+-+++|++-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVA 167 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 57899999988544444433 36788899999999999999998765
No 444
>PRK14967 putative methyltransferase; Provisional
Probab=84.02 E-value=1.8 Score=43.74 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=36.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||-+|.|.|.+...+.... ..++++||+||..++.|++.+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHH
Confidence 589999999999998888753 348999999999999888754
No 445
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=83.99 E-value=1.7 Score=46.04 Aligned_cols=112 Identities=19% Similarity=0.184 Sum_probs=76.7
Q ss_pred CCeEEEECCCcchHHHHHHHcC-------C--------------CeEEEEcCCH--HHHHHHHHHhhcC-----------
Q 006149 69 PPQILVPGCGNSRLSEHLYDAG-------F--------------HGITNVDFSK--VVISDMLRRNVRD----------- 114 (659)
Q Consensus 69 ~~~ILDiGCG~G~~s~~La~~g-------~--------------~~VtgvD~S~--~~i~~~~~~~~~~----------- 114 (659)
..+||-||-|.|.-...++..- . -+|+.||+.+ .+++.........
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999986554443310 0 2799999986 6666654443322
Q ss_pred -------CCCcEEEEeecCCCCCCC-------CcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 115 -------RSDMRWRVMDMTSMQFMD-------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 115 -------~~~i~~~~~D~~~l~~~~-------~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-+++|.+.|+..+..++ ...++|...+++.-+.... ...-.++|..+...++||-.+++++-.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 125789999998885322 2467777777776554332 233668999999999999999998865
Q ss_pred Cc
Q 006149 181 ES 182 (659)
Q Consensus 181 ~~ 182 (659)
..
T Consensus 245 GS 246 (315)
T PF11312_consen 245 GS 246 (315)
T ss_pred CC
Confidence 43
No 446
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.91 E-value=3 Score=45.10 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=56.9
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc---------CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 006149 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---------GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (659)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~---------g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (659)
.+.+.++....+.+..++|+|.|.|.++..+... ...++.-|++|+.....-++........+.+.. ..
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~--~~ 142 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVE--WV 142 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccccchhHHH--HH
Confidence 3444444323345678999999999999887663 135899999999888766555543322222221 11
Q ss_pred CCCCCCCcccEEEecccccccCC
Q 006149 127 SMQFMDETFDVILDKGGLDALME 149 (659)
Q Consensus 127 ~l~~~~~sFDvVi~~g~l~~l~~ 149 (659)
+ .++.+-.-+|+++..+|+++.
T Consensus 143 e-~~p~~~~~i~~~NElfDAlPv 164 (370)
T COG1565 143 E-DLPKKFPGIVVSNELFDALPV 164 (370)
T ss_pred H-hccccCceEEEechhhccccc
Confidence 1 233343567778899998863
No 447
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.74 E-value=7.7 Score=42.09 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=58.6
Q ss_pred eEEEEccC-cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCC--CCC-C---------------ee-EEecccchh
Q 006149 544 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDK-S---------------LK-VFNHLFCLQ 603 (659)
Q Consensus 544 ~vLiiGlG-gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~--~d~-r---------------l~-vf~~l~~~~ 603 (659)
+|+|+|.| -|.+.-.+.+.+.-.+|.++|+++.=+++|++++|.. .++ . .| +|+-.-...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 89999999 8888888888888889999999999999999999766 111 1 12 233334445
Q ss_pred HHHHHHHhhccCCCCcEEEecC
Q 006149 604 LEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 604 f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
..+.+-.++ +++|.++.-.
T Consensus 251 ~~~~ai~~~---r~gG~v~~vG 269 (350)
T COG1063 251 ALDQALEAL---RPGGTVVVVG 269 (350)
T ss_pred HHHHHHHHh---cCCCEEEEEe
Confidence 555555556 9999777644
No 448
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.54 E-value=3.1 Score=43.31 Aligned_cols=94 Identities=18% Similarity=0.085 Sum_probs=56.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE-ee----cCCCCCCCCcccEEE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MD----MTSMQFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~-~D----~~~l~~~~~sFDvVi 139 (659)
.++.+||-+|+|. |.++..+++. |...|+++|.++.-++.+++.- .. .++. .+ +..+ .....+|+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~G----a~-~~i~~~~~~~~~~~~-~~~~g~d~vi 192 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFG----AT-ALAEPEVLAERQGGL-QNGRGVDVAL 192 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC----Cc-EecCchhhHHHHHHH-hCCCCCCEEE
Confidence 4678999998864 3344555554 7656999999987665443321 11 1110 00 0111 1223589988
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+.-. . ...+....+.|+++|++++...
T Consensus 193 d~~G-----~--------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG-----A--------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC-----C--------hHHHHHHHHHhcCCCEEEEecc
Confidence 5321 1 1557888899999999998874
No 449
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=83.20 E-value=3.8 Score=46.12 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCeEEEEccCcchHHHHHHhhC----CCccEEEEecChhHHHHHHh---hcCCCCCCCe----------------eEE-e
Q 006149 542 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAED---YFGFTQDKSL----------------KVF-N 597 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~----p~~~i~~VEiDp~V~~vA~~---~Fgl~~d~rl----------------~vf-~ 597 (659)
.+.||+||.|-|.|.++..+.. ...+|.+||-+|.-+...++ .=++ ++++ |+. .
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCCCceeEEEE
Confidence 4679999999999999887654 35699999999975544322 2233 2233 444 1
Q ss_pred cc--------cchhHHHHHHHhhccCCCCcEEEecC
Q 006149 598 HL--------FCLQLEEDVNLVLFGLSSESCIKDNS 625 (659)
Q Consensus 598 ~l--------~~~~f~~~~~~~Lf~~~~~g~~~~n~ 625 (659)
++ ...+......+.| +|+|++..+.
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfL---kp~Gi~IP~~ 297 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFL---KPDGIMIPSS 297 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGE---EEEEEEESSE
T ss_pred eccCCccccccCHHHHHHHHhhc---CCCCEEeCcc
Confidence 11 2234556667778 9999998876
No 450
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=83.17 E-value=2.1 Score=45.91 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=||.|.|.+...|... +.+|++||+++.++++|++.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRA 186 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence 469999999999999999876 468999999999999998875
No 451
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.01 E-value=1.1 Score=49.94 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC----CCCCCcccEEE
Q 006149 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM----QFMDETFDVIL 139 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~--~~i~~~~~D~~~l----~~~~~sFDvVi 139 (659)
++.+|||.=|++|.-++..+.. |..+|++-|.++.+++..++....+. ..+....+|+..+ +-....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4679999999999999888776 56789999999999986644432222 3355666776543 23357899985
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEE
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
||-+..+. .+|..+.+.++.||.+++..
T Consensus 189 ----LDPyGs~s-------~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 ----LDPYGSPS-------PFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ----cCCCCCcc-------HHHHHHHHHhhcCCEEEEEe
Confidence 56555554 88999999999999988764
No 452
>PHA01634 hypothetical protein
Probab=82.88 E-value=2.9 Score=38.59 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=38.3
Q ss_pred CCCeEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Q 006149 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~ 109 (659)
.+.+|+|||.+-|..++.++-.|...|++++.++...+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHH
Confidence 578999999999999999999999999999999988887755
No 453
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.74 E-value=4.1 Score=41.38 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHHHHhhCCC---CCCCCCeEEEECCCcchHHHHHHHc--CCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEe
Q 006149 52 QLRDPLISLIGAP---TSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVM 123 (659)
Q Consensus 52 ~l~~~l~~~l~~~---~~~~~~~ILDiGCG~G~~s~~La~~--g~~~VtgvD~S~~~i~~~~~~~~~~~---~~i~~~~~ 123 (659)
++...+..+|... .+.++.++||||.|....--.+--+ |+ +.+|.|+++..++.++.....+. ..++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 4444566666541 1345679999999876654444333 66 89999999999998866554331 12343322
Q ss_pred -ecCCC---CC-CCCcccEEEeccccccc
Q 006149 124 -DMTSM---QF-MDETFDVILDKGGLDAL 147 (659)
Q Consensus 124 -D~~~l---~~-~~~sFDvVi~~g~l~~l 147 (659)
|-..+ -. .++.||+++|+..+|..
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCccccccccccccceeeeEecCCCcchh
Confidence 11111 11 25789999999988864
No 454
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=82.48 E-value=4.7 Score=40.31 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=56.1
Q ss_pred CCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC-------------------CCCeeEE-----
Q 006149 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-------------------DKSLKVF----- 596 (659)
Q Consensus 541 ~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~-------------------d~rl~vf----- 596 (659)
....+|-+|-|.|+-=+|.-- -|..+||++|.+|.+-++|.+-|--.. |..+|+.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 446789999999987776543 367899999999999999988763221 1112332
Q ss_pred --ecccchhHHHHHHHhhccCCCCcEEEe
Q 006149 597 --NHLFCLQLEEDVNLVLFGLSSESCIKD 623 (659)
Q Consensus 597 --~~l~~~~f~~~~~~~Lf~~~~~g~~~~ 623 (659)
.+=...+....++++| +|+|.+..
T Consensus 155 LCSve~~~k~L~e~~rlL---RpgG~iif 180 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLL---RPGGRIIF 180 (252)
T ss_pred EeccCCHHHHHHHHHHhc---CCCcEEEE
Confidence 1223456677899999 99997754
No 455
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=82.18 E-value=2.4 Score=44.08 Aligned_cols=45 Identities=20% Similarity=0.427 Sum_probs=40.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhh
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 584 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~ 584 (659)
-.+..+|=+|-|.|+++.++.+.+|+.++++||..++-+.+|.+-
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN 191 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKEN 191 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHH
Confidence 344579999999999999999999999999999999999999764
No 456
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=81.68 E-value=2.1 Score=45.03 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=39.6
Q ss_pred CeEEEEccC--cchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCC
Q 006149 543 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ 589 (659)
Q Consensus 543 ~~vLiiGlG--gG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~ 589 (659)
.+|+|+|+| ||+++++|+.......|..+|.+..-.+.| ..+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-~~lgv~d 51 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-LELGVID 51 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-hhcCccc
Confidence 689999999 999999999999888888888888877777 5677754
No 457
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=81.57 E-value=6.3 Score=42.44 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcC---CHHHHHHHHHHhhcCCCCcEEEEeecCCCC----CCCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDF---SKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~---S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~----~~~~sFDv 137 (659)
.++.+||.+|||. |.++..+++. |. +|++++. ++.-++.++ .. + ..++ +..+.+ ...+.||+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~-~~---G--a~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE-EL---G--ATYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH-Hc---C--CEEe--cCCccchhhhhhcCCCCE
Confidence 4678999999875 4455666665 66 7999986 565554332 22 1 1221 111111 01246898
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++.-. . ...+....+.|++||++++....
T Consensus 242 vid~~g-----~--------~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATG-----V--------PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEECcC-----C--------HHHHHHHHHHccCCcEEEEEecC
Confidence 886432 1 14678889999999999887654
No 458
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.08 E-value=10 Score=40.88 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (659)
.++.+||..|||. |..+..+++. |...|+++|.++.-.+.+++ . +.. .++ |..+.. .....+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~---Ga~-~~i--~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-F---GAT-HTV--NSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-c---CCc-eEE--cCCCcCHHHHHHHHhCCCCCC
Confidence 5688999999864 3445556655 66569999999877665532 2 111 111 111110 1223589
Q ss_pred EEEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 137 vVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
+|++.-. . ...+....+.|++||++++...
T Consensus 248 ~vid~~g-----~--------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 248 VVIDAVG-----R--------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEEECCC-----C--------HHHHHHHHHHhccCCEEEEECC
Confidence 9985321 1 1456777889999999988764
No 459
>PLN02672 methionine S-methyltransferase
Probab=80.99 E-value=2.3 Score=52.58 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=||-|.|.++..+...+|..++++|||+|..+++|++=.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 35899999999999999999999889999999999999996443
No 460
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.83 E-value=2.7 Score=44.38 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=50.4
Q ss_pred eEEEECCCcchHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCcccEEEeccc
Q 006149 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVILDKGG 143 (659)
Q Consensus 71 ~ILDiGCG~G~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDvVi~~g~ 143 (659)
+++|+-||-|.++.-|...|+..+.++|+++.+++...... + ...+.|+.++. ++. .+|+++....
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~----~--~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF----P--EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH----T--EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc----c--ccccccccccccccccc-cceEEEeccC
Confidence 78999999999999999999888999999998887553333 3 88899999884 443 5999986443
No 461
>PHA01634 hypothetical protein
Probab=80.82 E-value=4.5 Score=37.31 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhccccCCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
-|.|.|-+-....-.++. =..++|+.||.+-|.-|-|.....-. .|.++|.+|...++.++
T Consensus 9 ~~~c~ywrey~~~Y~~id---------vk~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 9 KLECDYWREYPHAYGMLN---------VYQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWEE 69 (156)
T ss_pred HccchHHHHHHHHhhhee---------ecCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHHH
Confidence 367888777665544432 23478999999999999888877654 89999999999998875
No 462
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.43 E-value=6.4 Score=39.97 Aligned_cols=108 Identities=15% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCCC-CCCe--------------------e---
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQ-DKSL--------------------K--- 594 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~~-d~rl--------------------~--- 594 (659)
-+|+++|.||.=.|--+--.....| .-++.++|||+.-.+++.++-.+.. +..+ .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 3578999999864433333333344 5799999999999999988764431 1222 1
Q ss_pred -EE----ecccchhHHHHHHHhhccCCCCcEEEecC--chHHHHHHHhhcc--CCccccchhHH---HHHHHhhh
Q 006149 595 -VF----NHLFCLQLEEDVNLVLFGLSSESCIKDNS--FPEAAVQLGKLVK--FQHLEISQSIM---DAAKKIRC 657 (659)
Q Consensus 595 -vf----~~l~~~~f~~~~~~~Lf~~~~~g~~~~n~--~~~~~~~l~~~~~--f~~~~~~~~~~---~~~~~~~~ 657 (659)
+| ...|. .+|+.+-+.| +++|+++++. |+.. +.. +.-++++..+- ++-|||.+
T Consensus 152 faFvDadK~nY~-~y~e~~l~Ll---r~GGvi~~DNvl~~G~------v~~p~~~~~~~~~~~r~~~~~n~~l~~ 216 (237)
T KOG1663|consen 152 FAFVDADKDNYS-NYYERLLRLL---RVGGVIVVDNVLWPGV------VADPDVNTPVRGRSIREALNLNKKLAR 216 (237)
T ss_pred EEEEccchHHHH-HHHHHHHhhc---ccccEEEEeccccCCc------ccCcccCCCcchhhhhhhhhhhhHhcc
Confidence 22 12334 7888888899 9999887744 4441 112 33344555555 55555543
No 463
>PRK05867 short chain dehydrogenase; Provisional
Probab=80.11 E-value=15 Score=37.11 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|..|++.| .++..|++.|+ +|+.++.++..++...+.......++.++.+|+.+.. + .-+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 3578999998765 24466666787 8999999987777665554444456788889988742 0 0147
Q ss_pred ccEEEeccccc
Q 006149 135 FDVILDKGGLD 145 (659)
Q Consensus 135 FDvVi~~g~l~ 145 (659)
.|+++.+....
T Consensus 87 id~lv~~ag~~ 97 (253)
T PRK05867 87 IDIAVCNAGII 97 (253)
T ss_pred CCEEEECCCCC
Confidence 89988765443
No 464
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.05 E-value=2.6 Score=46.37 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=60.2
Q ss_pred cCCHHHHHHHH-HHhhcCCCCcEEEEeecCCC--CCCCCcccEEEecccccccCCcccchHHHHHHHHHHHhccccCeEE
Q 006149 98 DFSKVVISDML-RRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (659)
Q Consensus 98 D~S~~~i~~~~-~~~~~~~~~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~l 174 (659)
+..|..+..-. +..+...++++++.+++.+. ..+++++|.++.....+++.+.. +.+.++++.+.++|||++
T Consensus 256 ~~~P~YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-----~~~~~~~l~~~~~pgaRV 330 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-----LNEEWQELARTARPGARV 330 (380)
T ss_pred CCCChhhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-----HHHHHHHHHHHhCCCCEE
Confidence 55554443211 22223347899999999886 35689999999999999986644 789999999999999999
Q ss_pred EEEEcCCc
Q 006149 175 VCLTLAES 182 (659)
Q Consensus 175 vi~~~~~~ 182 (659)
+.-+.+.+
T Consensus 331 ~~Rsa~~~ 338 (380)
T PF11899_consen 331 LWRSAAVP 338 (380)
T ss_pred EEeeCCCC
Confidence 99998744
No 465
>PRK08265 short chain dehydrogenase; Provisional
Probab=79.79 E-value=20 Score=36.60 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCCeEEEECCCcc---hHHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----CC-----CCc
Q 006149 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----FM-----DET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G---~~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~~-----~~s 134 (659)
.+.++|..|++.| .++..|++.|. +|+.+|.++.-++.+.+.. ..++.++.+|+.+.. +. -+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3568999997654 23455666687 8999999886555443332 346888899998752 11 146
Q ss_pred ccEEEecccc
Q 006149 135 FDVILDKGGL 144 (659)
Q Consensus 135 FDvVi~~g~l 144 (659)
.|+++.+...
T Consensus 81 id~lv~~ag~ 90 (261)
T PRK08265 81 VDILVNLACT 90 (261)
T ss_pred CCEEEECCCC
Confidence 7988876543
No 466
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=79.64 E-value=7.9 Score=34.85 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=56.1
Q ss_pred CcchHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-------C-CCCCcccEEEecccccccC
Q 006149 78 GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-------Q-FMDETFDVILDKGGLDALM 148 (659)
Q Consensus 78 G~G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l-------~-~~~~sFDvVi~~g~l~~l~ 148 (659)
|-|..+..+++. | .+|+++|.++.-++.+++ . + .. ...|-.+. . .+...+|+|++.-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~-~---G--a~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE-L---G--AD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH-T---T--ES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh-h---c--cc-ccccccccccccccccccccccceEEEEecC-----
Confidence 357788888876 7 699999999987775533 2 1 11 11222222 1 23357999986422
Q ss_pred CcccchHHHHHHHHHHHhccccCeEEEEEEcCC
Q 006149 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (659)
Q Consensus 149 ~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~~ 181 (659)
. ...++....+|+++|+++++....
T Consensus 68 ~--------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 S--------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp S--------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred c--------HHHHHHHHHHhccCCEEEEEEccC
Confidence 1 267999999999999999998764
No 467
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=79.42 E-value=3.5 Score=43.16 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=32.3
Q ss_pred CCCCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHH
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA 581 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA 581 (659)
+...+|.+||-||+-+.-+|.+. |. +|+||||+|.-+.+-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-Pa-~id~VDlN~ahiAln 101 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-PA-RIDVVDLNPAHIALN 101 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-Cc-eeEEEeCCHHHHHHH
Confidence 45578999999999777777765 54 999999999877654
No 468
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=78.87 E-value=14 Score=41.43 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=37.7
Q ss_pred CCeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|.|.|..+.++....+ ..+|++||+++..++.+++.+
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 295 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA 295 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence 36899999999998888887654 458999999999999998776
No 469
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.64 E-value=4.8 Score=43.71 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE---eecCC-C-CCCCCcccEEE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV---MDMTS-M-QFMDETFDVIL 139 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~---~D~~~-l-~~~~~sFDvVi 139 (659)
.++.+||-.|+|. |.++..+++. |...|+++|.++.-++.+++ . +.. .++. .|..+ + ....+.+|+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~---Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-L---GAT-ATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-c---CCc-eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 5678999999864 3344555554 66579999999977665432 2 111 1111 11100 0 01123689998
Q ss_pred ecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 140 ~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
+.-. . ...+....+.|+++|++++....
T Consensus 265 d~~G-----~--------~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 265 EMAG-----S--------VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred ECCC-----C--------hHHHHHHHHHHhcCCEEEEEccC
Confidence 6321 1 14577788899999999887643
No 470
>PRK13699 putative methylase; Provisional
Probab=77.96 E-value=2.7 Score=42.84 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=39.3
Q ss_pred cEEEEeecCCC--CCCCCcccEEEecccccc-cC---C----cccchHHHHHHHHHHHhccccCeEEEEE
Q 006149 118 MRWRVMDMTSM--QFMDETFDVILDKGGLDA-LM---E----PELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (659)
Q Consensus 118 i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~-l~---~----~~~~~~~~~~~l~ei~rvLkpGG~lvi~ 177 (659)
++++++|..+. .++++++|+|+...-... .. . .+....-....+.+++|+|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35677888765 678899999997543320 00 0 0000122568899999999999988764
No 471
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.93 E-value=18 Score=38.04 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC----CCCCCcccEEEe
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILD 140 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDvVi~ 140 (659)
.++.+||..|+|. |..+..+++. |...|+.++-++...+.+.+.. .. .++..+-.+. ......+|+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~~-~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----AT-ETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----Ce-EEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 5678999998753 5555666665 6544899999987776553221 11 1211111110 112356899985
Q ss_pred cccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 141 ~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.-. . ...+..+.+.|+++|+++.....
T Consensus 233 ~~~-----~--------~~~~~~~~~~l~~~G~~v~~g~~ 259 (334)
T cd08234 233 ATG-----V--------PKTLEQAIEYARRGGTVLVFGVY 259 (334)
T ss_pred CCC-----C--------hHHHHHHHHHHhcCCEEEEEecC
Confidence 311 0 15677888999999999877653
No 472
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.49 E-value=26 Score=35.70 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=51.0
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C----CCCcc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F----MDETF 135 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~----~~~sF 135 (659)
++.++|-.|++.|. ++..|++.|+ +|++++.++.-++...... ....++.++.+|+.+.. + ..+..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 35689999987642 4455666787 8999999987776654443 23457888999998753 0 01457
Q ss_pred cEEEecccc
Q 006149 136 DVILDKGGL 144 (659)
Q Consensus 136 DvVi~~g~l 144 (659)
|+|+.....
T Consensus 82 d~lv~~ag~ 90 (263)
T PRK09072 82 NVLINNAGV 90 (263)
T ss_pred CEEEECCCC
Confidence 988876544
No 473
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=77.47 E-value=4.6 Score=40.27 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=35.1
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
.+||=+|.|.|++...+..... .+|++||+|+..+++|++-+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHH
Confidence 5899999999999975433333 59999999999999999875
No 474
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=77.27 E-value=4.8 Score=39.83 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=35.2
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..|||=||-|.|.|..+|.+. .+++...||||++-+.-|.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~ 54 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA 54 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH
Confidence 479999999999999999997 48899999999995555543
No 475
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=77.02 E-value=11 Score=37.43 Aligned_cols=136 Identities=14% Similarity=0.149 Sum_probs=76.2
Q ss_pred hhHHHHHhhcCCCCccccccc----hhHHHHHHHHhhCCCCCCCCCeEEEECCCcchHHHHHHHc----C-CCeEEEEcC
Q 006149 29 ENWDKFFTIRGIGDSFEWYAE----WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDF 99 (659)
Q Consensus 29 eyWd~~y~~~~~~~~fewy~~----~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~~s~~La~~----g-~~~VtgvD~ 99 (659)
+-|...|........+.|.+. ++.-.-...+++-. ..+..|+|+|.--|..+...|.. | ..+|+++|+
T Consensus 29 ~~~~~~~~~n~~~~~~twmG~p~~k~p~D~~~yQellw~---~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdI 105 (237)
T COG3510 29 EEYHKWYYGNDVTYNYTWMGIPCIKSPSDMWNYQELLWE---LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDI 105 (237)
T ss_pred HHHHHHHhccCceEEeeEecccccCCHHHHHHHHHHHHh---cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEec
Confidence 445554443323455667654 11111133344433 35689999999999888777664 4 138999999
Q ss_pred CHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC------CCcccEEE-ecccccccCCcccchHHHHHHHHHHHhccccCe
Q 006149 100 SKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM------DETFDVIL-DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (659)
Q Consensus 100 S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~------~~sFDvVi-~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 172 (659)
+-..++.+ +...+++.|+.++-.+.... .+.+--|+ +..+-|++. .+-+-++...++|..|-
T Consensus 106 di~~~~p~----a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~-------hvLAel~~~~pllsaG~ 174 (237)
T COG3510 106 DIKPLDPA----AREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSME-------HVLAELKLLAPLLSAGD 174 (237)
T ss_pred ccCcCChh----hhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHH-------HHHHHHHHhhhHhhcCc
Confidence 86444322 22358899999998775310 11222333 222222211 13355666677777777
Q ss_pred EEEEEE
Q 006149 173 KFVCLT 178 (659)
Q Consensus 173 ~lvi~~ 178 (659)
++++-+
T Consensus 175 Y~vVeD 180 (237)
T COG3510 175 YLVVED 180 (237)
T ss_pred eEEEec
Confidence 777655
No 476
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=76.97 E-value=5.1 Score=39.39 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHh
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~ 583 (659)
..+||=||-|.|.+...+.... ...+++||+++..++.|++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH
Confidence 4589999999999999887654 4578999999999998864
No 477
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=76.64 E-value=5.5 Score=37.14 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=40.0
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC----CCccEEEEecChhHHHHHHhhc
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~----p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+..|+=+|.|-|-|.++|...| ++.+|.+||.++..++.|.++-
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 556789999999999999999932 6789999999999999988775
No 478
>PRK06701 short chain dehydrogenase; Provisional
Probab=76.64 E-value=22 Score=37.12 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=62.1
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCH-HHHHHHHHHhhcCCCCcEEEEeecCCCC-----CC-----CC
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSK-VVISDMLRRNVRDRSDMRWRVMDMTSMQ-----FM-----DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~-~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~~-----~~ 133 (659)
.+.+||..|++.|. ++..|++.|. +|+.++.++ ..++.........+.++.++.+|+.+.. +. -+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35689999976542 3455666787 888888764 2233332333233456888999988753 11 13
Q ss_pred cccEEEeccccccc----CCcc-cch--------HHHHHHHHHHHhccccCeEEEEEEc
Q 006149 134 TFDVILDKGGLDAL----MEPE-LGH--------KLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 134 sFDvVi~~g~l~~l----~~~~-~~~--------~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.+|+|+........ .+.. +.. ...-.+++.+.+.++++|.++.++.
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 57888865443211 1110 000 1144555566666677777776654
No 479
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.55 E-value=6.6 Score=42.02 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe---ecCCC--CCCCCccc-EE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM---DMTSM--QFMDETFD-VI 138 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~---D~~~l--~~~~~sFD-vV 138 (659)
.++.+||-.|||. |..+..+++. |...|+++|.++.-.+.+++ . +.. .++.. +.... ......+| +|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---Ga~-~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-L---GAM-QTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-c---CCc-eEecCcccCHHHHHHHhcCCCCCeEE
Confidence 4678999999855 3334455554 66558999999877664422 2 111 11111 10000 01223577 66
Q ss_pred EecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 139 i~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
++ .... ...+....+.|++||++++....
T Consensus 234 ~d-----~~G~--------~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 234 LE-----TAGV--------PQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred EE-----CCCC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 64 2221 25688888999999999887643
No 480
>PRK11524 putative methyltransferase; Provisional
Probab=76.52 E-value=2.8 Score=44.11 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=41.8
Q ss_pred CcEEEEeecCCC--CCCCCcccEEEeccccccc---CCcccc------hHHHHHHHHHHHhccccCeEEEEEE
Q 006149 117 DMRWRVMDMTSM--QFMDETFDVILDKGGLDAL---MEPELG------HKLGNQYLSEVKRLLKSGGKFVCLT 178 (659)
Q Consensus 117 ~i~~~~~D~~~l--~~~~~sFDvVi~~g~l~~l---~~~~~~------~~~~~~~l~ei~rvLkpGG~lvi~~ 178 (659)
..+++++|..+. .+++++||+|++.-.+..- ...... .......+.++.++|||||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 456788888874 4678899999986543210 000000 0114689999999999999998863
No 481
>PRK05876 short chain dehydrogenase; Provisional
Probab=76.44 E-value=24 Score=36.51 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|..|+++|. ++..|++.|. +|+.+|.++..++...+.....+.++.++.+|+.+.. + .-+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35689988887652 3455666687 8999999987777665554434456788899998752 0 1135
Q ss_pred ccEEEecccc
Q 006149 135 FDVILDKGGL 144 (659)
Q Consensus 135 FDvVi~~g~l 144 (659)
.|+++.+...
T Consensus 84 id~li~nAg~ 93 (275)
T PRK05876 84 VDVVFSNAGI 93 (275)
T ss_pred CCEEEECCCc
Confidence 7998876554
No 482
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.43 E-value=32 Score=35.12 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|..|++.|. ++..|++.|+ +|+.++.++..++.+.+.....+.++.++.+|+.+.. + .-+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45689999988753 4566677787 7999999987776665555444457888999998752 1 1146
Q ss_pred ccEEEecccc
Q 006149 135 FDVILDKGGL 144 (659)
Q Consensus 135 FDvVi~~g~l 144 (659)
.|+++.....
T Consensus 88 id~li~~ag~ 97 (265)
T PRK07097 88 IDILVNNAGI 97 (265)
T ss_pred CCEEEECCCC
Confidence 8999876544
No 483
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.39 E-value=17 Score=38.86 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+||-.|||. |..+..+++. |. +|++++.++.-.+.+++.-. .. + .|..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga---~~--v--i~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGA---AS--A--GGAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCC---ce--e--cccccc--CcccceEEEECCCc
Confidence 5788999999863 3344555554 65 79999999877665533211 11 1 111111 12457876642211
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEc
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
...+....+.|++||++++...
T Consensus 234 -------------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -------------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -------------HHHHHHHHHhhCCCcEEEEEec
Confidence 1457888899999999988765
No 484
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=76.29 E-value=16 Score=37.44 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCcccEEEecccc
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDvVi~~g~l 144 (659)
.++.+||-.|||. |..+..+++. |...|++++.++.-.+.+.+ .. ....+... .........+|+|++...-
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~-~g-~~~~~~~~----~~~~~~~~~~d~vl~~~~~ 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA-LG-PADPVAAD----TADEIGGRGADVVIEASGS 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH-cC-CCcccccc----chhhhcCCCCCEEEEccCC
Confidence 5678999999865 5555666665 65339999999877664432 21 01111000 0001123468998853211
Q ss_pred cccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
...+....+.|+++|+++.+...
T Consensus 170 -------------~~~~~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 170 -------------PSALETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred -------------hHHHHHHHHHhcCCcEEEEEecc
Confidence 14577788899999999877643
No 485
>PLN02740 Alcohol dehydrogenase-like
Probab=76.26 E-value=6.3 Score=43.04 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEee-----cCC-C-CCCCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD-----MTS-M-QFMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D-----~~~-l-~~~~~sFDv 137 (659)
.++.+||-+|||. |..+..+++. |...|+++|.++.-++.+++ . +.. .++... ..+ . ....+.+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~---Ga~-~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-M---GIT-DFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-c---CCc-EEEecccccchHHHHHHHHhCCCCCE
Confidence 5788999999864 3334455554 65579999999877765532 2 111 122111 100 0 111236999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccC-eEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~lvi~~~~ 180 (659)
|++.-. . ...+......+++| |+++++...
T Consensus 272 vid~~G-----~--------~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 272 SFECAG-----N--------VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred EEECCC-----C--------hHHHHHHHHhhhcCCCEEEEEccC
Confidence 986322 1 14577777888897 998877643
No 486
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=76.06 E-value=7.2 Score=41.40 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=42.9
Q ss_pred CeEEEEccCcchHHHHHHhhCC-CccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 543 VKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p-~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
..++=.++|+|+.+..+.+.+| +.+|.++|+||.+++.|++-+. +..|+.++
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i 73 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLV 73 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEE
Confidence 4788899999999999999886 6799999999999999998653 23456554
No 487
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=75.75 E-value=4.6 Score=39.75 Aligned_cols=52 Identities=23% Similarity=0.297 Sum_probs=43.5
Q ss_pred CeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhcCCCCCCCeeEE
Q 006149 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVF 596 (659)
Q Consensus 543 ~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~Fgl~~d~rl~vf 596 (659)
--+.=+|.|.|.|..+-.+. - -+|.+||.||...++|++-..++.+....+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv 85 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-A-ERVIAIEKDPKRARLAEENLHVPGDVNWEVV 85 (252)
T ss_pred hceeeccCCcchHHHHHHhh-h-ceEEEEecCcHHHHHhhhcCCCCCCcceEEE
Confidence 35677899999999888777 3 4999999999999999999888877777655
No 488
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=75.50 E-value=7.2 Score=43.59 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
..+||=+|.|.|+....+....+..+|+++|+++..++.+++-+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~ 288 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENL 288 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHH
Confidence 46899999999999999999887779999999999999998765
No 489
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.18 E-value=33 Score=34.77 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=51.7
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhc--CCCCcEEEEeecCCCC-C---------CC
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ-F---------MD 132 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~--~~~~i~~~~~D~~~l~-~---------~~ 132 (659)
.+.++|..|++.|. ++..|++.|. +|+.+|.++..++...+.... ...++.++.+|+.+.. . .-
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35689999987552 3455666787 899999988877766555543 2456788899998752 0 01
Q ss_pred CcccEEEecccc
Q 006149 133 ETFDVILDKGGL 144 (659)
Q Consensus 133 ~sFDvVi~~g~l 144 (659)
+..|+++.....
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 468888866543
No 490
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=74.86 E-value=9.3 Score=38.50 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-------CCCCcccE
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------FMDETFDV 137 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-------~~~~sFDv 137 (659)
.++.+||..|+|. |..+..+++. | .+|++++.++...+.+.... .. .+ .|..+.. ...+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g---~~--~~--~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELG---AD--HV--IDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhC---Cc--ee--ccCCcCCHHHHHHHhcCCCCCE
Confidence 4678999999996 6666666665 5 58999999987666543221 10 11 1111111 12357999
Q ss_pred EEecccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 138 Vi~~g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
|++...- ...+..+.+.|+++|+++.....
T Consensus 205 vi~~~~~-------------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 205 VIDAVGG-------------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred EEECCCC-------------HHHHHHHHHhcccCCEEEEEccC
Confidence 9854221 03467778899999999987654
No 491
>PRK07109 short chain dehydrogenase; Provisional
Probab=74.73 E-value=28 Score=37.32 Aligned_cols=76 Identities=7% Similarity=0.045 Sum_probs=52.1
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-C---------CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-F---------MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~---------~~~s 134 (659)
.+.+||-.|++.|. ++..|++.|. +|+.++.++..++.+.+.....+.++.++.+|+.+.. . .-+.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 35689999976542 2355566787 8999999988777665555444567888999998752 0 0146
Q ss_pred ccEEEecccc
Q 006149 135 FDVILDKGGL 144 (659)
Q Consensus 135 FDvVi~~g~l 144 (659)
+|+++.+...
T Consensus 86 iD~lInnAg~ 95 (334)
T PRK07109 86 IDTWVNNAMV 95 (334)
T ss_pred CCEEEECCCc
Confidence 8998876544
No 492
>PRK08339 short chain dehydrogenase; Provisional
Probab=74.63 E-value=36 Score=34.90 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCCC-----C----CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-----F----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~-~~~i~~~~~D~~~l~-----~----~~~s 134 (659)
.+.++|..|++.|. ++..|++.|+ +|+.+|.++.-++.+.+..... ..++.++.+|+.+.. + .-+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 35688999987663 4566677787 8999999987776655443322 346888999998752 1 1146
Q ss_pred ccEEEeccc
Q 006149 135 FDVILDKGG 143 (659)
Q Consensus 135 FDvVi~~g~ 143 (659)
.|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 888886544
No 493
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.44 E-value=8.5 Score=40.94 Aligned_cols=98 Identities=17% Similarity=0.127 Sum_probs=55.8
Q ss_pred CCCCeEEEECCCc-chHHHHHHHc-CCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCC-CC-CCCcccEEEec
Q 006149 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSM-QF-MDETFDVILDK 141 (659)
Q Consensus 67 ~~~~~ILDiGCG~-G~~s~~La~~-g~~~VtgvD~S~~~i~~~~~~~~~~~~~-i~~~~~D~~~l-~~-~~~sFDvVi~~ 141 (659)
.++.+||-.|+|. |.++..+++. |..+|+++|.++.-.+.+++.- . .. +.....+...+ .. ....+|+|++.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~g-a--~~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALG-A--DFVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-C--CEEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 5688999998753 2334445554 7645999999987766553221 1 10 01111110011 11 22369999853
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 006149 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (659)
Q Consensus 142 g~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~lvi~~~~ 180 (659)
.. . ...+....+.|+++|++++....
T Consensus 239 ~g-----~--------~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 239 SG-----N--------TAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CC-----C--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence 21 1 14467778899999999877643
No 494
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.33 E-value=40 Score=34.06 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=50.2
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----C-----CCCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----F-----MDET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~-----~~~s 134 (659)
.+.++|-.|++.|. ++..|++.|. +|+.+|.++..+..+.........++.++.+|+.+.. + ..+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 35689999976542 3455556687 8999999887766555444333456778888988752 1 1146
Q ss_pred ccEEEecccc
Q 006149 135 FDVILDKGGL 144 (659)
Q Consensus 135 FDvVi~~g~l 144 (659)
+|+|+.....
T Consensus 87 id~vi~~ag~ 96 (254)
T PRK08085 87 IDVLINNAGI 96 (254)
T ss_pred CCEEEECCCc
Confidence 8999976554
No 495
>PRK07576 short chain dehydrogenase; Provisional
Probab=74.11 E-value=34 Score=35.05 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCCeEEEECCCcchHH----HHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----CC-----CC
Q 006149 68 PPPQILVPGCGNSRLS----EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----FM-----DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s----~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~~-----~~ 133 (659)
++.++|..|.+ |.++ ..|+..|. +|+++|.++.-+....+.......++.++..|+.+.. +. .+
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45689988864 4443 44555676 8999999887666554444333456778889988642 11 13
Q ss_pred cccEEEecc
Q 006149 134 TFDVILDKG 142 (659)
Q Consensus 134 sFDvVi~~g 142 (659)
..|+++...
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988654
No 496
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.68 E-value=34 Score=34.88 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCCeEEEECCCcchHH----HHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC-----C-----CC
Q 006149 68 PPPQILVPGCGNSRLS----EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF-----M-----DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s----~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~-----~-----~~ 133 (659)
++.++|-.|++ |.++ ..|++.|+ +|+.++.++..++.+.+.......++.++.+|+.+... . -+
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45789999965 4444 44556687 99999998877665554443334568888899887531 0 13
Q ss_pred cccEEEeccc
Q 006149 134 TFDVILDKGG 143 (659)
Q Consensus 134 sFDvVi~~g~ 143 (659)
.+|+|+....
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899886543
No 497
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=73.45 E-value=9.7 Score=36.93 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCCCeEEEEccCcchHHHHHHhhC-CCccEEEEecChhHHHHHHhhcC
Q 006149 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG 586 (659)
Q Consensus 540 ~~~~~vLiiGlGgG~l~~~l~~~~-p~~~i~~VEiDp~V~~vA~~~Fg 586 (659)
.....||-+|-|.|.+.+-+..+. +...++++|.+|+-+..-.+.|.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p 94 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP 94 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence 344689999999999999888764 56799999999999999888885
No 498
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.35 E-value=33 Score=34.14 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCCeEEEECCCcch---HHHHHHHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----CC-----CCc
Q 006149 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----FM-----DET 134 (659)
Q Consensus 68 ~~~~ILDiGCG~G~---~s~~La~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~~-----~~s 134 (659)
.+.+||..|++.|. +...+++.|+ +|++++-++.....+.+.... ..++.++.+|+.+.. +. -+.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSK-YGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35699999996432 2344445687 899999998766654333322 236788899988742 00 134
Q ss_pred ccEEEecccccccCCcccchH-----------HHHHHHHHHHhccccCeEEEEEEc
Q 006149 135 FDVILDKGGLDALMEPELGHK-----------LGNQYLSEVKRLLKSGGKFVCLTL 179 (659)
Q Consensus 135 FDvVi~~g~l~~l~~~~~~~~-----------~~~~~l~ei~rvLkpGG~lvi~~~ 179 (659)
.|.++............ ... ....+++.+.+.++.+|.+++++.
T Consensus 82 id~ii~~ag~~~~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVE-EFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCEEEEcCCCcCCCchH-HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 68777554322111110 000 022345566666777887777654
No 499
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=73.01 E-value=6.1 Score=42.20 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=37.5
Q ss_pred CCeEEEEccCcchHHHHHHhhCCCccEEEEecChhHHHHHHhhc
Q 006149 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 585 (659)
Q Consensus 542 ~~~vLiiGlGgG~l~~~l~~~~p~~~i~~VEiDp~V~~vA~~~F 585 (659)
+.+||=+|.|.|.++..+.... .+|++||+++..++.|++-.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHH
Confidence 4689999999999999998853 68999999999999998765
No 500
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.81 E-value=32 Score=34.38 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCCeEEEECCCcchHHHHH----HHcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-----CC-----CC
Q 006149 68 PPPQILVPGCGNSRLSEHL----YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----FM-----DE 133 (659)
Q Consensus 68 ~~~~ILDiGCG~G~~s~~L----a~~g~~~VtgvD~S~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-----~~-----~~ 133 (659)
.+.++|-.|++ |.++..+ ++.|. +|++++.++..+....+.......++.++.+|+.+.. +. -+
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35788888864 4444444 44576 8999998887666554444334457889999998752 11 14
Q ss_pred cccEEEeccc
Q 006149 134 TFDVILDKGG 143 (659)
Q Consensus 134 sFDvVi~~g~ 143 (659)
..|+|+....
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6888886543
Done!