BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006150
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
Tuberculosis
Length = 130
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 523 NIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIV 582
+I YP+A +VPG+++ R D+ + F+N+ + R L ++ + +V ++ ++
Sbjct: 3 DIDDYPQAKRVPGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQV---------EWFVL 53
Query: 583 EMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLT 642
++D + + AL+ L L +R + +A + + L A+S IGED+IF+T
Sbjct: 54 NAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMT 113
Query: 643 VADAVSS 649
+ AV +
Sbjct: 114 LPTAVQA 120
>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
Prestin (Anion Transporter Slc26a5)
Length = 143
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 507 PRTAILGKVPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEE 566
P +LG++P T VY +I Y E ++PG+ I ++++ IY++NS+ + R
Sbjct: 2 PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRK------ 55
Query: 567 EVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLH 626
I +I++ + V +D+ G+ L G+ + + + LA V++ L
Sbjct: 56 --TGVNGSENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLT 113
Query: 627 ASSF 630
++ F
Sbjct: 114 SNRF 117
>pdb|3MGL|A Chain A, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|3MGL|B Chain B, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|4DGH|A Chain A, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
pdb|4DGH|B Chain B, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
Length = 130
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 578 QFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGED 637
Q LI+ + V D +GI LE +S KR ++++++ V KL + L+GE
Sbjct: 50 QILILRLKWVPFXDITGIQTLEEXIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQ 109
Query: 638 NIFLTVADAVSSCAPKLVEEQP 659
N++ A+S+ + +E QP
Sbjct: 110 NVYPVFEGALSAALTE-IEAQP 130
>pdb|3OIR|A Chain A, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|3OIR|B Chain B, Crystal Structure Of Sulfate Transporter Family Protein
From Wolinella Succinogenes
pdb|4DGF|A Chain A, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
pdb|4DGF|B Chain B, Structure Of Sulp Transporter Stas Domain From Wolinella
Succinogenes Refined To 1.6 Angstrom Resolution
Length = 135
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 528 PEATK---VP-GVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVE 583
P+AT VP GV I ++ +F V +R+ L+ EE P++ L
Sbjct: 12 PDATSKKVVPLGVEIYEINGPFFFG----VADRLKGVLDVIEE-------TPKVFILRXR 60
Query: 584 MSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTV 643
PV ID +G HAL S EKR L+L+ + L+ F +GE+ +F +
Sbjct: 61 RVPV--IDATGXHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHI 118
Query: 644 ADAVSSCAPKLVE 656
A++ A LVE
Sbjct: 119 DKALAY-AKLLVE 130
>pdb|4HOJ|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Neisseria Gonorrhoeae, Target Efi-501841, With Bound
Glutathione
Length = 210
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 437 TPNAILASIIINAVISLIDIGAATLLWKIDKFD 469
+P+ + I+ S+ID+ A LLW++D +D
Sbjct: 135 SPSFSKSKYILGEDFSMIDVALAPLLWRLDHYD 167
>pdb|1H4Y|A Chain A, Structure Of The Anti-Sigma Factor Antagonist Spoiiaa In
Its Unphosphorylated Form
pdb|1H4Y|B Chain B, Structure Of The Anti-Sigma Factor Antagonist Spoiiaa In
Its Unphosphorylated Form
Length = 117
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 567 EVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVV 621
++ A +Q + +I ++ +D+SG+ + G R LE + IL NP P V
Sbjct: 32 KISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPTV 86
>pdb|2J6E|H Chain H, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|I Chain I, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 231
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 299 STFFVYITRADKQGVQIVKNI----KKGINPSSVNEIYFSGDYLLKGFRIGVVAGMIGLT 354
S ++ +I + +G++ + +I NPS + + S D F + + + T
Sbjct: 44 SHYWGWIRQPPGKGLEWIGSIYYSGNTYFNPSLKSRVTISVDTSKNQFSLKLSSVTAADT 103
Query: 355 EAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAV 414
R DY LDG M+V G T+ V++GS S + + C+T
Sbjct: 104 AVYYCAR--LGPDDYTLDG---------MDVWGQGTTVTVSSGSASAPTLFPLVSCDT-- 150
Query: 415 SNIVMSCVV--FLTLEFITPLFKYTPNAILAS 444
S++ + C+ FL + IT +KY N+ ++S
Sbjct: 151 SSVAVGCLAQDFLP-DSITFSWKYKNNSDISS 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,973,008
Number of Sequences: 62578
Number of extensions: 655092
Number of successful extensions: 1736
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 10
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)