Query 006150
Match_columns 659
No_of_seqs 407 out of 2236
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 19:05:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 4E-111 8E-116 956.5 42.2 623 30-656 13-649 (665)
2 TIGR00815 sulP high affinity s 100.0 1E-100 2E-105 868.2 57.7 561 81-646 1-563 (563)
3 PRK11660 putative transporter; 100.0 1.4E-91 3.1E-96 793.4 55.8 524 84-653 19-566 (568)
4 COG0659 SUL1 Sulfate permease 100.0 3.2E-91 7E-96 777.4 53.2 548 76-656 3-553 (554)
5 PF00916 Sulfate_transp: Sulfa 100.0 2.3E-48 5.1E-53 405.0 17.7 280 193-472 1-280 (280)
6 TIGR03173 pbuX xanthine permea 100.0 2.2E-26 4.7E-31 251.7 33.0 321 105-470 11-353 (406)
7 COG2252 Xanthine/uracil/vitami 99.9 9.3E-26 2E-30 239.4 29.1 383 74-503 4-407 (436)
8 TIGR00801 ncs2 uracil-xanthine 99.9 2.2E-25 4.8E-30 243.7 29.6 334 104-476 20-378 (415)
9 PRK10720 uracil transporter; P 99.9 2.8E-25 6E-30 243.1 29.9 357 105-509 30-415 (428)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 1.9E-25 4E-30 186.5 6.6 83 80-162 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 5E-21 1.1E-25 209.5 32.5 329 95-466 30-378 (429)
12 PRK11412 putative uracil/xanth 99.8 3.4E-18 7.3E-23 186.1 32.9 335 104-469 23-374 (433)
13 COG2233 UraA Xanthine/uracil p 99.8 8.1E-19 1.8E-23 188.1 24.2 308 125-466 57-376 (451)
14 PF00860 Xan_ur_permease: Perm 99.8 3.7E-18 8E-23 185.8 27.9 343 95-469 1-366 (389)
15 PF01740 STAS: STAS domain; I 99.7 1.5E-18 3.3E-23 156.5 6.9 117 527-646 1-117 (117)
16 TIGR02886 spore_II_AA anti-sig 99.7 3.7E-16 8E-21 138.3 10.4 102 532-647 5-106 (106)
17 cd07041 STAS_RsbR_RsbS_like Su 99.6 1.3E-15 2.7E-20 135.7 10.5 102 533-647 8-109 (109)
18 cd06844 STAS Sulphate Transpor 99.6 8.7E-15 1.9E-19 128.2 10.0 92 532-634 5-96 (100)
19 TIGR00843 benE benzoate transp 99.5 3.9E-12 8.4E-17 135.7 27.7 341 96-496 22-392 (395)
20 TIGR00834 ae anion exchange pr 99.5 1.8E-11 3.8E-16 141.8 30.2 344 98-454 372-790 (900)
21 TIGR00377 ant_ant_sig anti-ant 99.4 9.5E-13 2.1E-17 116.7 9.2 100 532-645 9-108 (108)
22 cd07042 STAS_SulP_like_sulfate 99.4 3.8E-12 8.3E-17 112.3 12.0 101 531-641 5-105 (107)
23 KOG1172 Na+-independent Cl/HCO 99.4 4.3E-10 9.3E-15 127.1 30.8 332 112-454 377-766 (876)
24 PF03594 BenE: Benzoate membra 99.3 3.3E-09 7.1E-14 111.5 29.5 273 176-497 87-377 (378)
25 cd07043 STAS_anti-anti-sigma_f 99.2 4.6E-11 9.9E-16 103.8 10.3 90 533-634 6-95 (99)
26 COG1366 SpoIIAA Anti-anti-sigm 99.2 1.9E-10 4.1E-15 103.7 11.1 98 537-648 15-112 (117)
27 PF13466 STAS_2: STAS domain 99.0 1.7E-09 3.7E-14 90.4 8.0 80 539-631 1-80 (80)
28 PF00955 HCO3_cotransp: HCO3- 98.8 5.3E-10 1.1E-14 123.4 -0.3 346 100-455 38-472 (510)
29 COG3135 BenE Uncharacterized p 98.8 1.6E-06 3.5E-11 89.4 23.6 221 177-445 103-335 (402)
30 KOG1292 Xanthine/uracil transp 98.7 5.4E-07 1.2E-11 96.5 18.6 297 126-455 55-391 (510)
31 PF11840 DUF3360: Protein of u 97.8 0.0057 1.2E-07 63.9 22.7 253 181-470 146-420 (492)
32 COG3113 Predicted NTP binding 97.4 0.00067 1.4E-08 57.6 7.5 58 577-634 39-96 (99)
33 TIGR00815 sulP high affinity s 92.6 3.5 7.6E-05 47.5 16.4 111 338-454 14-142 (563)
34 PF11964 SpoIIAA-like: SpoIIAA 90.9 0.2 4.4E-06 43.8 3.0 105 535-651 1-108 (109)
35 COG0659 SUL1 Sulfate permease 89.1 6.3 0.00014 45.2 13.9 107 342-454 25-143 (554)
36 PF14213 DUF4325: Domain of un 88.7 2 4.3E-05 35.1 7.1 66 549-627 2-70 (74)
37 PF13344 Hydrolase_6: Haloacid 87.2 1.1 2.5E-05 38.9 5.0 72 580-653 1-77 (101)
38 KOG3040 Predicted sugar phosph 83.4 1.7 3.7E-05 42.5 4.5 77 575-653 5-86 (262)
39 TIGR03173 pbuX xanthine permea 80.4 14 0.0003 40.6 11.2 98 102-216 225-332 (406)
40 PRK11660 putative transporter; 77.4 23 0.00049 40.9 12.1 171 329-501 273-446 (568)
41 TIGR00801 ncs2 uracil-xanthine 76.9 11 0.00023 41.8 8.9 116 97-229 235-361 (415)
42 PF09345 DUF1987: Domain of un 76.0 10 0.00023 32.9 6.7 69 537-614 10-81 (99)
43 PRK11412 putative uracil/xanth 75.0 50 0.0011 36.7 13.4 117 98-231 242-369 (433)
44 PRK09928 choline transport pro 74.6 1.6E+02 0.0036 34.5 17.8 48 552-616 528-575 (679)
45 COG5439 Uncharacterized conser 74.6 6.6 0.00014 33.2 4.8 42 577-618 46-88 (112)
46 KOG2882 p-Nitrophenyl phosphat 67.8 14 0.00029 38.5 6.4 77 576-653 21-102 (306)
47 PF13788 DUF4180: Domain of un 66.8 69 0.0015 28.5 9.8 102 533-650 3-113 (113)
48 COG2233 UraA Xanthine/uracil p 66.6 20 0.00043 39.8 7.8 60 348-407 257-328 (451)
49 PRK10720 uracil transporter; P 64.7 36 0.00079 37.7 9.7 112 100-230 229-353 (428)
50 PRK10444 UMP phosphatase; Prov 60.6 18 0.00038 37.0 5.8 73 578-652 2-79 (248)
51 TIGR01452 PGP_euk phosphoglyco 59.9 17 0.00036 37.7 5.6 74 577-652 2-80 (279)
52 COG4618 ArpD ABC-type protease 59.6 28 0.0006 39.0 7.3 76 575-652 489-564 (580)
53 PRK02261 methylaspartate mutas 58.6 32 0.0007 31.7 6.7 73 576-656 54-136 (137)
54 PLN02645 phosphoglycolate phos 57.5 35 0.00075 36.1 7.6 72 577-650 28-104 (311)
55 TIGR01457 HAD-SF-IIA-hyp2 HAD- 56.7 20 0.00044 36.5 5.6 73 578-652 2-79 (249)
56 TIGR00843 benE benzoate transp 55.8 2E+02 0.0043 31.6 13.0 106 340-447 22-143 (395)
57 TIGR01684 viral_ppase viral ph 55.8 32 0.00068 36.0 6.6 60 575-634 124-189 (301)
58 TIGR03616 RutG pyrimidine util 52.6 55 0.0012 36.3 8.5 107 102-227 253-370 (429)
59 TIGR01458 HAD-SF-IIA-hyp3 HAD- 52.6 22 0.00047 36.5 5.0 73 578-652 2-83 (257)
60 TIGR01459 HAD-SF-IIA-hyp4 HAD- 51.7 46 0.001 33.6 7.2 73 576-650 7-84 (242)
61 COG0786 GltS Na+/glutamate sym 51.3 30 0.00066 37.4 5.8 181 174-376 1-196 (404)
62 cd02071 MM_CoA_mut_B12_BD meth 49.7 62 0.0013 28.9 6.9 68 576-651 50-121 (122)
63 COG2056 Predicted permease [Ge 49.2 3.8E+02 0.0081 29.0 14.9 42 185-226 6-47 (444)
64 COG0573 PstC ABC-type phosphat 48.1 3.4E+02 0.0074 28.7 12.8 60 82-141 63-138 (310)
65 TIGR00640 acid_CoA_mut_C methy 47.4 58 0.0013 29.8 6.4 70 577-654 54-127 (132)
66 PF00916 Sulfate_transp: Sulfa 45.9 1.6E+02 0.0035 30.2 10.3 168 263-432 74-244 (280)
67 cd07023 S49_Sppa_N_C Signal pe 45.5 99 0.0022 30.4 8.3 66 536-613 2-70 (208)
68 cd07019 S49_SppA_1 Signal pept 45.4 96 0.0021 30.7 8.2 68 535-614 1-75 (211)
69 TIGR00822 EII-Sor PTS system, 43.1 1.4E+02 0.003 30.8 9.0 25 197-221 165-189 (265)
70 TIGR01501 MthylAspMutase methy 42.3 59 0.0013 29.9 5.5 64 589-655 60-133 (134)
71 COG0647 NagD Predicted sugar p 40.8 57 0.0012 33.8 5.8 76 577-653 8-88 (269)
72 PF00308 Bac_DnaA: Bacterial d 39.1 1.4E+02 0.003 29.7 8.2 69 545-616 67-137 (219)
73 PHA00736 hypothetical protein 39.1 89 0.0019 24.6 5.1 68 112-189 4-72 (79)
74 TIGR00706 SppA_dom signal pept 38.7 1.4E+02 0.003 29.5 8.1 58 536-606 2-59 (207)
75 PRK11778 putative inner membra 38.7 2.9E+02 0.0063 29.6 10.8 70 533-614 89-159 (330)
76 cd07022 S49_Sppa_36K_type Sign 38.4 1.4E+02 0.003 29.6 8.1 37 574-612 40-76 (214)
77 PHA03398 viral phosphatase sup 38.3 83 0.0018 33.0 6.5 60 575-634 126-191 (303)
78 cd00394 Clp_protease_like Case 38.1 81 0.0017 29.4 6.1 57 538-606 1-57 (161)
79 PF00860 Xan_ur_permease: Perm 37.4 1.6E+02 0.0034 32.2 9.0 117 96-229 232-359 (389)
80 COG3715 ManY Phosphotransferas 35.5 1.7E+02 0.0037 30.1 8.1 64 371-435 51-114 (265)
81 PF03594 BenE: Benzoate membra 35.0 5.4E+02 0.012 28.0 12.1 112 341-454 7-138 (378)
82 TIGR00705 SppA_67K signal pept 33.3 4.7E+02 0.01 30.4 12.3 43 573-615 90-132 (584)
83 COG1433 Uncharacterized conser 33.1 1.2E+02 0.0026 27.4 5.9 49 601-652 57-106 (121)
84 PF13829 DUF4191: Domain of un 32.7 2.6E+02 0.0057 28.1 8.7 119 484-611 55-183 (224)
85 cd07018 S49_SppA_67K_type Sign 31.5 1.4E+02 0.0031 29.7 6.9 39 574-613 44-82 (222)
86 PF09930 DUF2162: Predicted tr 31.5 4.2E+02 0.0091 26.6 10.1 18 484-501 130-147 (224)
87 COG0053 MMT1 Predicted Co/Zn/C 31.4 4.7E+02 0.01 27.5 11.0 27 538-564 250-276 (304)
88 COG1121 ZnuC ABC-type Mn/Zn tr 30.7 97 0.0021 31.8 5.5 43 575-618 156-198 (254)
89 TIGR01686 FkbH FkbH-like domai 30.4 93 0.002 32.9 5.7 57 576-632 2-76 (320)
90 PRK03659 glutathione-regulated 29.9 5.4E+02 0.012 29.9 12.2 43 576-633 423-465 (601)
91 PRK11475 DNA-binding transcrip 29.9 2E+02 0.0044 28.3 7.6 58 577-636 38-98 (207)
92 PLN03211 ABC transporter G-25; 29.4 1.5E+02 0.0032 35.1 7.5 76 576-653 224-301 (659)
93 TIGR00844 c_cpa1 na(+)/h(+) an 29.1 1.1E+03 0.024 28.5 16.2 43 256-304 11-53 (810)
94 PF03609 EII-Sor: PTS system s 27.2 2.5E+02 0.0054 28.5 7.8 23 198-220 167-189 (238)
95 PF11340 DUF3142: Protein of u 26.7 4E+02 0.0087 25.9 8.6 79 533-618 4-83 (181)
96 TIGR00955 3a01204 The Eye Pigm 26.4 1.7E+02 0.0036 34.2 7.3 75 576-652 184-260 (617)
97 TIGR02663 nifX nitrogen fixati 26.3 1.7E+02 0.0037 26.0 5.8 50 608-659 62-112 (119)
98 TIGR01672 AphA HAD superfamily 26.3 3.4E+02 0.0074 27.5 8.6 77 541-633 42-160 (237)
99 PF11085 YqhR: Conserved membr 26.1 5.8E+02 0.013 24.5 9.3 42 263-308 77-118 (173)
100 TIGR00210 gltS sodium--glutama 25.2 1.3E+02 0.0028 33.1 5.7 40 183-222 8-51 (398)
101 TIGR01460 HAD-SF-IIA Haloacid 25.1 1.2E+02 0.0025 30.6 5.0 71 580-652 1-77 (236)
102 PRK09757 PTS system N-acetylga 25.0 2.2E+02 0.0048 29.5 7.0 25 197-221 166-190 (267)
103 PF03956 DUF340: Membrane prot 24.9 95 0.0021 30.4 4.1 57 435-491 23-80 (191)
104 PRK10949 protease 4; Provision 24.6 8.2E+02 0.018 28.7 12.3 44 572-615 108-151 (618)
105 PF03641 Lysine_decarbox: Poss 24.6 1.8E+02 0.004 26.4 5.8 58 593-650 62-133 (133)
106 COG3333 Uncharacterized protei 24.4 1E+03 0.022 26.6 14.7 62 151-213 327-395 (504)
107 cd02072 Glm_B12_BD B12 binding 24.2 1.6E+02 0.0035 26.8 5.2 60 588-650 57-126 (128)
108 cd07021 Clp_protease_NfeD_like 24.1 1.5E+02 0.0032 28.6 5.3 47 536-594 1-47 (178)
109 PRK15065 PTS system mannose-sp 23.6 3.9E+02 0.0086 27.5 8.5 24 197-220 166-189 (262)
110 PRK04596 minC septum formation 23.2 3E+02 0.0066 28.1 7.4 75 548-631 28-103 (248)
111 cd03238 ABC_UvrA The excision 23.2 2.5E+02 0.0055 26.9 6.7 45 577-622 108-152 (176)
112 PF00072 Response_reg: Respons 23.1 2.9E+02 0.0064 23.0 6.7 54 576-634 43-98 (112)
113 PF06946 Phage_holin_5: Phage 22.9 1.7E+02 0.0036 25.1 4.6 17 285-305 34-50 (93)
114 TIGR01662 HAD-SF-IIIA HAD-supe 22.8 1.5E+02 0.0032 26.4 4.8 54 578-631 1-73 (132)
115 COG1030 NfeD Membrane-bound se 22.3 1.7E+02 0.0037 32.3 5.7 65 533-613 25-89 (436)
116 PRK01973 septum formation inhi 21.6 3.6E+02 0.0078 28.0 7.7 74 548-631 26-99 (271)
117 TIGR02324 CP_lyasePhnL phospho 21.6 2.6E+02 0.0057 27.5 6.8 47 576-623 167-213 (224)
118 COG1137 YhbG ABC-type (unclass 21.5 3.6E+02 0.0078 27.0 7.2 52 575-629 156-207 (243)
119 cd03269 ABC_putative_ATPase Th 21.1 2.9E+02 0.0064 26.8 7.0 46 576-622 146-191 (210)
120 PRK04516 minC septum formation 21.1 4.2E+02 0.0092 26.8 7.9 73 548-631 25-98 (235)
121 PF06800 Sugar_transport: Suga 20.9 9.4E+02 0.02 24.9 10.8 131 87-219 36-181 (269)
122 COG0565 LasT rRNA methylase [T 20.7 2E+02 0.0044 29.2 5.5 68 576-651 4-74 (242)
123 PF13401 AAA_22: AAA domain; P 20.6 1.1E+02 0.0024 26.9 3.5 37 578-618 89-125 (131)
124 cd03226 ABC_cobalt_CbiO_domain 20.4 3.2E+02 0.0068 26.5 7.0 46 576-622 144-189 (205)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-111 Score=956.52 Aligned_cols=623 Identities=41% Similarity=0.659 Sum_probs=561.6
Q ss_pred eeeeecCCCCcchHHHHHHhhhhhccCCCCCccccccc--chhhHHHhhhhhcccccccccCCh-hhhhhhHHHHHHHHH
Q 006150 30 YIHKVGVPPKQNLFKEFRETLKETFFADDPLRPFKDRS--RSQKFILGIQTIFPIFEWGRKYNL-KKLRGDLIAGLTIAS 106 (659)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~l~~~~p~~~w~~~y~~-~~l~~Di~aGltv~~ 106 (659)
..+.++.|+.++..++.++..++..+.+++.++++++. ++.++.++++++||+++|+|+|++ +|+.+|++||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 13 SRASVDTPTFDSSNEEEKSSVENTPTRKDKSERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred ccccccCCCCCcchhhhhccccCccccccHHHHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 45677888888888999999998877777777766655 456788999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhccCCCc---chHHHHHHHHHHH
Q 006150 107 LCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNELDPIN---EKAQYQRLAFTAT 183 (659)
Q Consensus 107 ~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~~~~~---~~~~~~~~a~~~t 183 (659)
+++||+||||.+||+||+|||||+|+|+++|++||+|||+++||+|++|+|+++++.+.+++.. ++..+++++.++|
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887665443 4567889999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCc-HHHHH
Q 006150 184 FFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWN-WQTIA 262 (659)
Q Consensus 184 ~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 262 (659)
|++|++|++||++|||++++|+|+|++.||++|+|++|+.+|+|+++|+++++.+.+....+...+....+.++ +.+++
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKTLATLV 252 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccccchhhh
Confidence 99999999999999999999999999999999999999999999999998777676665554444444332222 78999
Q ss_pred HHHHHHHHHHHHHH-hhhccccccccccchhhHHHHHHHHHHHHhhcCCC-CeEEeeccCCCCCCCCccccccchHhHHH
Q 006150 263 IGASFLSFLLFAKF-IGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQ-GVQIVKNIKKGINPSSVNEIYFSGDYLLK 340 (659)
Q Consensus 263 ig~~~l~~ll~~~~-~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~-~v~~vg~ip~g~p~~~~p~~~~~~~~~~~ 340 (659)
++++++++++..|+ ..++++|++|+|.+.++++++++|+++|.++.+.+ ...+++++|.|+|+|++|.+++.. .
T Consensus 253 ~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~----~ 328 (665)
T KOG0236|consen 253 LSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP----Q 328 (665)
T ss_pred hHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH----H
Confidence 99999999999995 44555677779999999999999999999998764 566677999999999999988754 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHH
Q 006150 341 GFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMS 420 (659)
Q Consensus 341 ~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a 420 (659)
.+..++++++++++|+++++|+++++++|++|.||||+|+|++|++||||+|||+|+++|||++|.++|+|||++|++++
T Consensus 329 ~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~~~ 408 (665)
T KOG0236|consen 329 VIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIVSA 408 (665)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHHHH
Confidence 44555778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh-hcCHHHHHHHhccCccceehhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 006150 421 CVVFLTLEFITPLFKYTPNAILASIIINAVIS-LIDIGAATLLWKIDKFDFVACMGAFFGVVFSSVEIGLLIAVSISFAK 499 (659)
Q Consensus 421 ~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~Gv~~sl~~ 499 (659)
+++++++++++|+|+|+|+|+||+|+++++.+ ++++++++++||.+|.|+++|+.|++.+++.++++|+++|+++|++.
T Consensus 409 ~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~~~ 488 (665)
T KOG0236|consen 409 ALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSLFF 488 (665)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceEEeccccCccccccCcCCCccccCCcEEEEEeCCceeeechHHHHHHH--HHHHHhHHHHH-Hh-hhcCC
Q 006150 500 ILLQVTRPRTAILGKVPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERI--LRWLEDEEEEV-KA-ATYQP 575 (659)
Q Consensus 500 ~l~~~~rp~~~~lg~~~~t~~~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i--~~~~~~~~~~~-~~-~~~~~ 575 (659)
+++|.+||+...+|+++++++|++.+||++.++.++++|+|+++|++|.|.+.+++++ .+++++++... .. ....+
T Consensus 489 ii~~~~~p~~~~l~~~~~t~~~~~~~~y~~~~~~~gi~i~r~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (665)
T KOG0236|consen 489 IILRSQRPRISLLGRIPRTNIYRDINQYRELKEIPGIKIFRISSPLLFGNVESFEKKLERLKYLRKEEVLENSARELHEN 568 (665)
T ss_pred HHHHhcCcchhhhcccCCCccccchhhcchhhccCceEEEEeccceeeccHHHHHHHHHHHHhhhhcccccCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999988877 36665532111 10 11122
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhhhh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKLV 655 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l~ 655 (659)
+.+++|+||+++.+||++|+.+|+++.+++++++++++++|++++++++|.++++.+.++++++|+|++||++.|+.++.
T Consensus 569 ~~~~vild~s~v~~iD~~g~~~L~~l~~~~~~~~i~~~~~n~~~~v~~~l~~~~~~~~~~~~~~f~tv~~av~~~~~~~~ 648 (665)
T KOG0236|consen 569 SIHSVILDCSGVSFIDTSGASALKSLFKDLKTRGVQVLLANCPSSVREKLSKAGFFDFIGKDNLFLSVHDAVLDAVSELS 648 (665)
T ss_pred cceEEEEECCccchhhHHHHHHHHHHHHHHHhcCcEEEEeCCCHHHHHHHHhhccccccchhhhhccHHHHHHHHHHhhh
Confidence 48899999999999999999999999999999999999999999999999999998999999999999999999998766
Q ss_pred h
Q 006150 656 E 656 (659)
Q Consensus 656 ~ 656 (659)
+
T Consensus 649 ~ 649 (665)
T KOG0236|consen 649 R 649 (665)
T ss_pred c
Confidence 4
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=9.7e-101 Score=868.16 Aligned_cols=561 Identities=51% Similarity=0.828 Sum_probs=519.9
Q ss_pred ccccccccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccccccchhHHHHHHHHH
Q 006150 81 PIFEWGRKYNLKKLRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGT 160 (659)
Q Consensus 81 p~~~w~~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~ 160 (659)
|+++|+++|+++++++|++||+|++++++||+||||.++|+||++|||++++++++|++||+||++++||++.+|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCc
Q 006150 161 MLQNELDPINEKAQYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSD 240 (659)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~ 240 (659)
++.+...+...+.++.+++.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99886533332346788999999999999999999999999999999999999999999999999999999975334556
Q ss_pred hHHHHHHHHHHccC--CCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeec
Q 006150 241 IISVMHSVVASAHH--GWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKN 318 (659)
Q Consensus 241 ~~~~~~~~~~~~~~--~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ 318 (659)
+++.+.+.+.++++ .|||.+++++++++++++..|++.+|+++..|.+.|.+|+++++++++++.++.+++++.++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 77777777777754 2599999999999999999998888888776777679999999999999998888899999999
Q ss_pred cCCCCCCCCccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccc
Q 006150 319 IKKGINPSSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGS 398 (659)
Q Consensus 319 ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s 398 (659)
+|.|+|.+..|.++ +..+...++.++.+++++++|++++++++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~~--~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITLD--WELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 99999877777654 4677788888899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccceehhhhhhh
Q 006150 399 FSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDFVACMGAFF 478 (659)
Q Consensus 399 ~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~ 478 (659)
+|||++|+++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+++++++++||.++.|+.+|++|++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcCcceEEeccccCccccccCcCCCccccCCcEEEEEeCCceeeechHHHHHHHH
Q 006150 479 GVVFSSVEIGLLIAVSISFAKILLQVTRPRTAILGKVPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNYVKERIL 558 (659)
Q Consensus 479 ~~~~~~v~~Gl~~Gv~~sl~~~l~~~~rp~~~~lg~~~~t~~~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~ 558 (659)
.+++.|++.|+++|+++|++.+++|.+||+..++|++++++.|||.+++++.++.|+++++|++|+|||+|++++++++.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~I~r~~g~L~F~na~~~~~~l~ 478 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRGAVLGRVPGTEVYRSIKQYPNARPPPGILVYRVDGPLYFANAEDLKDRLL 478 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeEeeecCCCCcccchhhCcccCCCCCEEEEEcCCceEeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999998
Q ss_pred HHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcc
Q 006150 559 RWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDN 638 (659)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~ 638 (659)
+.++++.++ +++.++.+++|+||++|+++|+||+++|.++.++++++|+++.+++.++++++.|+++|+.+.+++++
T Consensus 479 ~~~~~~~~~---~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~ 555 (563)
T TIGR00815 479 KRIEDETRR---ELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLANPNKAVRSTLKRGGLVELIGEEH 555 (563)
T ss_pred HHHhhhccc---cccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEecCChHHHHHHHHCCchhhcCCcc
Confidence 877643211 12233579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHH
Q 006150 639 IFLTVADA 646 (659)
Q Consensus 639 if~sv~~A 646 (659)
+|+|+|||
T Consensus 556 ~f~s~~~A 563 (563)
T TIGR00815 556 FFPSVSDA 563 (563)
T ss_pred eeCChhhC
Confidence 99999986
No 3
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=1.4e-91 Score=793.38 Aligned_cols=524 Identities=21% Similarity=0.340 Sum_probs=472.6
Q ss_pred cccccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhh
Q 006150 84 EWGRKYNLKKLRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQ 163 (659)
Q Consensus 84 ~w~~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~ 163 (659)
+|+|+|+++++++|++||+|+|++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.+++++++.+.
T Consensus 19 ~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~ 98 (568)
T PRK11660 19 CWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQ 98 (568)
T ss_pred HHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHH
Q 006150 164 NELDPINEKAQYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIIS 243 (659)
Q Consensus 164 ~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~ 243 (659)
+. ..+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|+++++|++..+...++++
T Consensus 99 ~~---------~~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~~ 169 (568)
T PRK11660 99 QF---------GLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYLE 169 (568)
T ss_pred Hh---------hHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 42 133466789999999999999999999999999999999999999999999999999975434567888
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeec-----
Q 006150 244 VMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKN----- 318 (659)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~----- 318 (659)
.+.++++++++ +||.+.++|++++++++.++++.+| +| .+++++++++++++.++...++++.+|+
T Consensus 170 ~l~~~~~~l~~-~~~~~~~~~~~~l~lll~~~~~~~~------iP--~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~~ 240 (568)
T PRK11660 170 KVGALFQALPT-INWGDALIGIVTLGVLILWPRLKIR------LP--GHLPALLAGTAVMGVLNLLGGHVATIGSRFHYV 240 (568)
T ss_pred HHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHhhccc------Cc--hHHHHHHHHHHHHHHHhccCCCceeeccccccc
Confidence 88899999976 9999999999999999888765554 66 7799999999999999877777787775
Q ss_pred ---------cCCCCCCCCccc---------cccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHH
Q 006150 319 ---------IKKGINPSSVNE---------IYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVAL 380 (659)
Q Consensus 319 ---------ip~g~p~~~~p~---------~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~ 380 (659)
+|+++|.+.+|. .+++++.+.+.++.++.+++++++|++.+++.++++++++.|.||||+|+
T Consensus 241 ~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~ 320 (568)
T PRK11660 241 LADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQ 320 (568)
T ss_pred ccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 677777666563 12355677788888889999999999999999999999999999999999
Q ss_pred hhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhhcCHHHHH
Q 006150 381 GAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVISLIDIGAAT 460 (659)
Q Consensus 381 G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~ 460 (659)
|++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+++++.+
T Consensus 321 G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~ 400 (568)
T PRK11660 321 GLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVV 400 (568)
T ss_pred hHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhc-cCccceehhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhcCcceEEeccccCccccccCcCCCccccCCcEEEE
Q 006150 461 LLWK-IDKFDFVACMGAFFGVVFSSVEIGLLIAVSISFAKILLQVTRPRTAILGKVPRTTVYRNIQQYPEATKVPGVLIV 539 (659)
Q Consensus 461 ~l~k-~~~~d~~v~~~t~~~~~~~~v~~Gl~~Gv~~sl~~~l~~~~rp~~~~lg~~~~t~~~~~~~~~~~~~~~~~v~Il 539 (659)
++|| .++.|+.+|+.+++.+++.+++.|+++|+++|++.+++|.+|+. +.++ .++ .++.++++++
T Consensus 401 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~-----~~~~------~~~---~~~~~~i~iv 466 (568)
T PRK11660 401 DLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT-----RLAP------ISV---QDVPDDVLVL 466 (568)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----cccc------ccc---ccCCCcEEEE
Confidence 8877 58899999999999999999999999999999999999998864 2211 111 3456799999
Q ss_pred EeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCCh
Q 006150 540 RVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGP 619 (659)
Q Consensus 540 rl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~ 619 (659)
|++|+|||+|++++++++.+.. ++.++||+||++|++||+||+++|.++.|++++ |+++.++++++
T Consensus 467 ~~~g~L~F~n~~~l~~~l~~~~-------------~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~l~~ 532 (568)
T PRK11660 467 RINGPLFFAAAERLFTELESRT-------------EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICNLQF 532 (568)
T ss_pred EeCCeeeeeeHHHHHHHHHhhC-------------CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEecCCh
Confidence 9999999999999999885421 346899999999999999999999999999999 99999999999
Q ss_pred hHHHHHHHcCCccccCCcccccCHHHHHHHhhhh
Q 006150 620 VVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPK 653 (659)
Q Consensus 620 ~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~ 653 (659)
++++.|+++|+.+..+.+++|+|+|||+++++++
T Consensus 533 ~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~~~~ 566 (568)
T PRK11660 533 QPLRTLARAGIQPIPGRLAFYPTLREALADLLRN 566 (568)
T ss_pred HHHHHHHHCCChhhcCcccccCCHHHHHHHHHhh
Confidence 9999999999999888889999999999999865
No 4
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-91 Score=777.41 Aligned_cols=548 Identities=30% Similarity=0.517 Sum_probs=510.2
Q ss_pred hhhhcccccccccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccccccchhHHHH
Q 006150 76 IQTIFPIFEWGRKYNLKKLRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVS 155 (659)
Q Consensus 76 l~~~~p~~~w~~~y~~~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~s 155 (659)
+.+++|..+|.+.|+.+|+++|++||+|+|++++||+||||..+|+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCcccc
Q 006150 156 LLLGTMLQNELDPINEKAQYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKF 235 (659)
Q Consensus 156 l~~~~~i~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~ 235 (659)
++++..+.++. +.+++.++++|+++|++|+++|++|||++++|+|+||+.||++|+|++|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999998643 567889999999999999999999999999999999999999999999999999999999742
Q ss_pred CCCCchHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCC--CCe
Q 006150 236 TKKSDIISVMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADK--QGV 313 (659)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~--~~v 313 (659)
..++++.+..++.+..+ +||.+++++++++++++.++++.++ +| ++|++++++|.++|.++.+. +|
T Consensus 157 --~~~~~~~~~~l~~~~~~-~~~~~~~lg~~~l~il~~~~~~~~~------~P--~~liaiv~~t~i~~~~~~~~~~~G- 224 (554)
T COG0659 157 --VSGFWAKVSALFTVLLT-INLATLLLGLLTLAILLFLPRLTPR------IP--SPLIALVLGTLIVWIFPLDSLRYG- 224 (554)
T ss_pred --ccchHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHccchhhh------CC--cHHHHHHHHHHHHHHhcCCchhcc-
Confidence 23377777778888765 8999999999999999999877655 67 78999999999999998774 66
Q ss_pred EEeeccCCCCCCCCccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccc
Q 006150 314 QIVKNIKKGINPSSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCY 393 (659)
Q Consensus 314 ~~vg~ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~ 393 (659)
+++|++|.++|.+.+|+++ .+.+.+.++.++.+++++++|++.++++++.++|+++|.||||+|+|++|+++++|||+
T Consensus 225 ~i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~ 302 (554)
T COG0659 225 EIPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGI 302 (554)
T ss_pred cCcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCc
Confidence 7899999999999999887 46778888888999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHh-ccCccceeh
Q 006150 394 VATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVISLIDIGAATLLW-KIDKFDFVA 472 (659)
Q Consensus 394 p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~-k~~~~d~~v 472 (659)
|+||+++||++|.++|+|||+|++++++++++++++++|+++|||+|+||+++++++++|+|++.++.++ |..|.|+.+
T Consensus 303 p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v 382 (554)
T COG0659 303 PATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLV 382 (554)
T ss_pred cccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999854 589999999
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHhcCcceEEeccccCccccccCcCCCccccCCcEEEEEeCCceeeechHH
Q 006150 473 CMGAFFGVVFSSVEIGLLIAVSISFAKILLQVTRPRTAILGKVPRTTVYRNIQQYPEATKVPGVLIVRVDSAIYFSNSNY 552 (659)
Q Consensus 473 ~~~t~~~~~~~~v~~Gl~~Gv~~sl~~~l~~~~rp~~~~lg~~~~t~~~~~~~~~~~~~~~~~v~Ilrl~g~L~F~na~~ 552 (659)
+++|++++++.+++.|+.+|+++|++.+++|.+||+...+++.++.+. ++.++++..++.|++.++|++||++|+|+++
T Consensus 383 ~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ri~gplfF~~~~~ 461 (554)
T COG0659 383 LLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRVPGPAG-SDNALKPLDEIGPGVLVYRLSGPLFFGNADR 461 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhhccCCCccc-ccccccccccCCCCeEEEEecCceEEeeHHH
Confidence 999999999999999999999999999999999999999988887665 6778888999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCcc
Q 006150 553 VKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTS 632 (659)
Q Consensus 553 ~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~ 632 (659)
+++++.+..++ +.+.+++|+++++++|.|+.++|+++.++++++|+++.+++.+.++++.+++.+..+
T Consensus 462 ~~~~i~~~~~~------------~~~~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~~~~~~~~~~l~~~~~~~ 529 (554)
T COG0659 462 LERALLGLIEE------------RPERVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIVGLSAQVLRLLRRAGLLY 529 (554)
T ss_pred HHHHHHHHHhc------------cCCEEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEeccchhhHHHHHHhcccc
Confidence 99999765432 367999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCHHHHHHHhhhhhhh
Q 006150 633 LIGEDNIFLTVADAVSSCAPKLVE 656 (659)
Q Consensus 633 ~~~~~~if~sv~~Av~~~~~~l~~ 656 (659)
..+++++|+++++|++.+.....+
T Consensus 530 ~i~~~~~f~~~~~a~~~~~~~~~~ 553 (554)
T COG0659 530 LVGAEHIFDSVDSALEKARKLLAQ 553 (554)
T ss_pred ccccccccchhHHHHHHHHHHhcc
Confidence 999899999999999988765443
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.3e-48 Score=405.04 Aligned_cols=280 Identities=36% Similarity=0.640 Sum_probs=255.0
Q ss_pred HHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 006150 193 LGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNWQTIAIGASFLSFLL 272 (659)
Q Consensus 193 lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll 272 (659)
||++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+...+....+.+++..+++.+||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 68999999999999999999999999999999999999997434455555666666665555369999999999999999
Q ss_pred HHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCCCCCCCCccccccchHhHHHHHHHHHHHHHHH
Q 006150 273 FAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKKGINPSSVNEIYFSGDYLLKGFRIGVVAGMIG 352 (659)
Q Consensus 273 ~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~ 352 (659)
..+++.++++++++.+.|.+++++++++++++.++.+.++++.+|++|.++|+|.+|+.+++++.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 99988877776667777799999999999999998888899999999999999999954455567778888888999999
Q ss_pred HHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhh
Q 006150 353 LTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITP 432 (659)
Q Consensus 353 ~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~ 432 (659)
++|++.++++++++++|++|.|||++|+|++|+++|+|||+|+++++|||++|+++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccceeh
Q 006150 433 LFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDFVA 472 (659)
Q Consensus 433 l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v 472 (659)
+++|+|+++||+++++++++|+|++.++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999875
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=2.2e-26 Score=251.70 Aligned_cols=321 Identities=14% Similarity=0.139 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHhCCCc-------hhhhhhccccchhhc----ccCCccccccchhH-HHHHHHHHHhhhccCCCcch
Q 006150 105 ASLCIPQDIGYAKLANLDP-------QYGLYSSFVPPLIYA----FMGSSRDIAIGPVA-VVSLLLGTMLQNELDPINEK 172 (659)
Q Consensus 105 ~~~~iPq~iaya~laglpp-------~~GLyss~v~~liya----l~Gss~~~~~Gp~a-~~sl~~~~~i~~~~~~~~~~ 172 (659)
+.+.+|.-++-+ .|+|+ ...+.++.++++++. .+|++.++..||.. .++.+... . .
T Consensus 11 ~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~-~---------~ 78 (406)
T TIGR03173 11 GAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAI-G---------A 78 (406)
T ss_pred HHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHH-h---------h
Confidence 445666655532 58887 567889999999996 67999999999854 33333221 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHc
Q 006150 173 AQYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASA 252 (659)
Q Consensus 173 ~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~ 252 (659)
...++.+..+.+++|++++++|. .++++.+++|+.+++.++..+|+.+...++++..|... ..
T Consensus 79 ~~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~---~~------------- 141 (406)
T TIGR03173 79 GGGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAG---AP------------- 141 (406)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCC---cc-------------
Confidence 23578899999999999999994 78999999999888889999999999988888765421 00
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCC-CCCC---CCc
Q 006150 253 HHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKK-GINP---SSV 328 (659)
Q Consensus 253 ~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~p~---~~~ 328 (659)
+..++.++.+++++++++++.+++.|+. ++.++.|+++++++++++.++..+ .+.+++.|. .+|. +..
T Consensus 142 -~~~~~~~~~l~l~~l~~~il~~~~~~~~-----~~~~aiLi~ivvg~iva~~~g~~~--~~~i~~~~~~~~P~~~~~~~ 213 (406)
T TIGR03173 142 -DFGSPQNLGLALLTLVIILLLNRFGKGF-----LRSIAVLLGLVVGTIVAAALGMVD--FSGVAEAPWFALPTPFHFGA 213 (406)
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHhhhH-----HHHhHHHHHHHHHHHHHHHhcCCC--chhhccCCeeeCCCCCcCCC
Confidence 1135666778888887777766554442 333388999999999999988643 222333221 2232 334
Q ss_pred cccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccC---ChhHHHHHhhhhhhhhccccccCccchhh-hHH
Q 006150 329 NEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLD---GNKEMVALGAMNVVGSMTSCYVATGSFSR-SAV 404 (659)
Q Consensus 329 p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d---~nqEl~a~G~aNi~~s~fg~~p~t~s~sr-S~v 404 (659)
|++++ ..+ ...+.+++++++|+++..++.++..|++.| .|||+.++|++|+++|+||++|+|+ +++ +++
T Consensus 214 P~f~~--~~~----~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~ 286 (406)
T TIGR03173 214 PTFDL--VAI----LTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGL 286 (406)
T ss_pred CeeCH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHH
Confidence 44433 333 233567889999999999999988887655 5799999999999999999999885 666 567
Q ss_pred HHhhCCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccce
Q 006150 405 NFMAGCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDF 470 (659)
Q Consensus 405 ~~~~G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~ 470 (659)
+..+|++||++++++++++++..++ ++++++++|.++++++++ +.++++....++.++|.+..|.
T Consensus 287 ~~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~ 353 (406)
T TIGR03173 287 VQLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRR 353 (406)
T ss_pred HHHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCc
Confidence 7889999999999999998888776 899999999999999888 6999998898988888765543
No 7
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.95 E-value=9.3e-26 Score=239.44 Aligned_cols=383 Identities=19% Similarity=0.226 Sum_probs=288.4
Q ss_pred HhhhhhcccccccccCChhhhhhhHHHHHHHHHHHHHHHHHHHH--------HhCCCch----hhhhhccccchhhcccC
Q 006150 74 LGIQTIFPIFEWGRKYNLKKLRGDLIAGLTIASLCIPQDIGYAK--------LANLDPQ----YGLYSSFVPPLIYAFMG 141 (659)
Q Consensus 74 ~~l~~~~p~~~w~~~y~~~~l~~Di~aGltv~~~~iPq~iaya~--------laglpp~----~GLyss~v~~liyal~G 141 (659)
+.+.++|.+.| +-.++|.|++||+|+++. |+|-. -+|.|.. ....+++++++.++++.
T Consensus 4 ~~~~~~F~l~~-----~~t~vrtEiiAGlTTFlt-----M~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~A 73 (436)
T COG2252 4 GDLDRFFKLKE-----HGTTVRTEVIAGLTTFLT-----MAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLYA 73 (436)
T ss_pred hHHHHHhCccc-----cCchHHHHHHHHHHHHHH-----HHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777765 569999999999999985 55532 2466642 35667899999999997
Q ss_pred Cccccccch-hHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhHhHHHHHhhHHHH
Q 006150 142 SSRDIAIGP-VAVVSLLLGTMLQNELDPINEKAQYQRLAFTATFFAGITQVTLGFFRL-GFLIDFLSHAAIVGFMGGAAV 219 (659)
Q Consensus 142 ss~~~~~Gp-~a~~sl~~~~~i~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gl 219 (659)
+.| +..+| .+..+....+++..+. ..||.+..+.|++|+++++++++++ .++++.+|+++..|..+|+|+
T Consensus 74 n~P-~alapgmglnAfFaftvv~~~g-------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 74 NLP-IALAPGMGLNAFFAFTVVLGMG-------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred cCc-hhhcchhhHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 754 44554 7778888888877632 3589999999999999999999998 558999999999999999999
Q ss_pred HHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHH
Q 006150 220 TIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILS 299 (659)
Q Consensus 220 ~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~ 299 (659)
+|..-.++ -.|+- ..++...+ .+++ .+.+.+++++..+++...+. .+|.|. +.+++++..
T Consensus 146 Fia~IgL~-~~Giv-v~~~~tlv--------~LG~-~~~p~vll~i~G~~l~~~L~--~~~i~G-------aili~i~~~ 205 (436)
T COG2252 146 FIALIGLK-NAGIV-VANPATLV--------ALGD-FTSPGVLLAILGLLLIIVLV--SRKIKG-------AILIGILVT 205 (436)
T ss_pred HHHHHHHh-hCCeE-EecCcceE--------Eeec-CCCchHHHHHHHHHHHHHHH--HhhccH-------hhhHHHHHH
Confidence 99988888 34552 11222211 1222 22234444444444433332 233221 457788888
Q ss_pred HHHHHHhhcCCCCeEEeeccCCCCCCCCccccccch-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------cccC
Q 006150 300 TFFVYITRADKQGVQIVKNIKKGINPSSVNEIYFSG-DYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKD------YQLD 372 (659)
Q Consensus 300 t~~~~~~~~~~~~v~~vg~ip~g~p~~~~p~~~~~~-~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~------~~~d 372 (659)
+++++.+|...+.-...+..|.-.| .+.++++.+ -.....++..+...++.+.|++++....+++.| +..|
T Consensus 206 t~~g~~~g~~~~~~~~~~~~p~~~~--~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~ 283 (436)
T COG2252 206 TILGIILGIDVHFGGLVGAPPSLSP--IFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPR 283 (436)
T ss_pred HHHHHHhcccccccccccCCCCccc--hhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccc
Confidence 9999998854332222333333222 233555544 333455556677888899999988888776533 2357
Q ss_pred ChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh
Q 006150 373 GNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVIS 452 (659)
Q Consensus 373 ~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~ 452 (659)
.+|.+.+++++.++|+++|+.|++ ++-+|+.....|+||+++++++++++++. +|++|++..+|..+.++.+++++..
T Consensus 284 ~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~l 361 (436)
T COG2252 284 IGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGAL 361 (436)
T ss_pred cchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHH
Confidence 899999999999999999999988 99999999999999999999999999999 6999999999999999999999999
Q ss_pred hcCHHHHHHHhccCccceehhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006150 453 LIDIGAATLLWKIDKFDFVACMGAFFGVVFSSVEIGLLIAVSISFAKILLQ 503 (659)
Q Consensus 453 li~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~Gv~~sl~~~l~~ 503 (659)
|+. .+.++|+.|+...+.+|+..+++.+.+.+.-|+.++++.|..-
T Consensus 362 M~~-----~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~ 407 (436)
T COG2252 362 MLS-----SVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVIL 407 (436)
T ss_pred HHh-----hhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 986 7889999999999999999999988888888888888877643
No 8
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.94 E-value=2.2e-25 Score=243.72 Aligned_cols=334 Identities=13% Similarity=0.132 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHHHhCCCc-------hhhhhhccccchhhcccCCcc---ccccchh-HHHHHHHHHHhhhccCCCcch
Q 006150 104 IASLCIPQDIGYAKLANLDP-------QYGLYSSFVPPLIYAFMGSSR---DIAIGPV-AVVSLLLGTMLQNELDPINEK 172 (659)
Q Consensus 104 v~~~~iPq~iaya~laglpp-------~~GLyss~v~~liyal~Gss~---~~~~Gp~-a~~sl~~~~~i~~~~~~~~~~ 172 (659)
.+.+.+|--++-+. +++ ...+..+.++++++++.++.+ ....|+. +.++.++.....
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~--------- 87 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSG--------- 87 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhc---------
Confidence 35566676666554 444 457889999999999987766 5666765 665544332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hh--hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHH
Q 006150 173 AQYQRLAFTATFFAGITQVTLGFF--RL--GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSV 248 (659)
Q Consensus 173 ~~~~~~a~~~t~l~Gv~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~ 248 (659)
..++.+....+++|+++++++.+ |+ +++.+++|+.|..+++.++|+.++...++++.|....+.+.
T Consensus 88 -~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~--------- 157 (415)
T TIGR00801 88 -LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSA--------- 157 (415)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccccc---------
Confidence 12567889999999999999985 44 46899999999999999999999999999998764211111
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCC-CCCCCC
Q 006150 249 VASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKK-GINPSS 327 (659)
Q Consensus 249 ~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~p~~~ 327 (659)
+..++.++.+++.++++++..+++.|+. ++.++.++++++++++++.+|..+. +-+.+.|. ++|.+.
T Consensus 158 -----~~~~~~~~~vg~~~l~~~vl~~~~~~g~-----~~~~aiLigiv~g~i~a~~lg~~~~--~~v~~~~~~~lP~~~ 225 (415)
T TIGR00801 158 -----TYGSLENLGVAFVVLALIILLNRFGKGF-----LKSISILIGILVGYILALFMGIVDF--SPVIDAPWFSLPTPF 225 (415)
T ss_pred -----ccCchhhHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHcCCccc--hhhccCcccccCCcc
Confidence 1125667888888888887776655552 3333789999999999999886432 11233332 455444
Q ss_pred ccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccC----ChhHHHHHhhhhhhhhccccccCccchhhhH
Q 006150 328 VNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLD----GNKEMVALGAMNVVGSMTSCYVATGSFSRSA 403 (659)
Q Consensus 328 ~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d----~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~ 403 (659)
.|..+|+...+. ..+.+++++++|+++..++++++.|++.| .|||+.++|++|+++|+||++|++++..+++
T Consensus 226 ~~g~~f~~~~~~----~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g 301 (415)
T TIGR00801 226 TFGPSFEWPAIL----TMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG 301 (415)
T ss_pred CCCceecHHHHH----HHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe
Confidence 443344444333 34568889999999999999999888664 5899999999999999999999999999999
Q ss_pred HHHhhCCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCcc---ceehhhhh
Q 006150 404 VNFMAGCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKF---DFVACMGA 476 (659)
Q Consensus 404 v~~~~G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~---d~~v~~~t 476 (659)
++..+|+++|.+..+.|+++++..++ ++++++++|.+++|++++ +.++++....++.+++.+.. +..+...+
T Consensus 302 ~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~~~r~~~i~~~s 378 (415)
T TIGR00801 302 VIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLDNRRNRNIIAAS 378 (415)
T ss_pred eeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccCcccceehHHHH
Confidence 99999999999999999999999999 999999999999999999 89999998999999876543 34444333
No 9
>PRK10720 uracil transporter; Provisional
Probab=99.94 E-value=2.8e-25 Score=243.07 Aligned_cols=357 Identities=13% Similarity=0.124 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCC-ccccccch-hHHHHHHHHHHhhhccCCCcchHHHHHHHHHH
Q 006150 105 ASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGS-SRDIAIGP-VAVVSLLLGTMLQNELDPINEKAQYQRLAFTA 182 (659)
Q Consensus 105 ~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gs-s~~~~~Gp-~a~~sl~~~~~i~~~~~~~~~~~~~~~~a~~~ 182 (659)
+.+.+|.-+ |+++...+..+.++++++.++++ ..++..|| ++.++.+.... . ..++.+..+
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~---------~~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--P---------LGYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--H---------ccHHHHHHH
Confidence 445556532 89999999999999999998764 66677787 44444433321 1 136788999
Q ss_pred HHHHHHHHHHHHhh--hh--hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcH
Q 006150 183 TFFAGITQVTLGFF--RL--GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNW 258 (659)
Q Consensus 183 t~l~Gv~~~~lg~~--rl--g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (659)
.+++|+++++++++ |+ +++.+++|+.|++.+++.+|+.++...++. .|... ... +..++
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~--~~~--------------~~~~~ 155 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLP--AEG--------------QTPDS 155 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccC--CCC--------------cccch
Confidence 99999999999997 33 478999999999999999999999777753 33211 010 12466
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeecc-CCCCCCCCccccccchHh
Q 006150 259 QTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNI-KKGINPSSVNEIYFSGDY 337 (659)
Q Consensus 259 ~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~i-p~g~p~~~~p~~~~~~~~ 337 (659)
.++.++++++++++...+..|++. +..+.++++++++++++.+|..+ ++.+++. +.++|.+..|+++ ...
T Consensus 156 ~~~~lalv~l~iil~~~~~~kg~~-----~~~~iLigIvvG~ila~~lG~~d--~~~v~~a~~~~lP~~~~P~fd--~~~ 226 (428)
T PRK10720 156 KTIIISMVTLAVTVLGSVLFRGFL-----AIIPILIGVLVGYALSFAMGMVD--TTPIIEAHWFALPTFYTPRFE--WFA 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHH-----HHhHHHHHHHHHHHHHHHhcCCC--HHHhhcCccccCCCCCCCcCc--HHH
Confidence 778888888888776554445432 22246899999999999988643 3333422 3456655556544 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCch
Q 006150 338 LLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDY----QLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETA 413 (659)
Q Consensus 338 ~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~----~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~ 413 (659)
+... +..+++.++|++++..+.++..++ +.|.|||+.++|++|+++|+||++|++++..+..+...+|..+|
T Consensus 227 il~l----~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr 302 (428)
T PRK10720 227 ILTI----LPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYST 302 (428)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchh
Confidence 4333 344456677888877776665443 34789999999999999999999999975444444445555555
Q ss_pred hhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhc--cCcc---ceehhh-----------h
Q 006150 414 VSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLLWK--IDKF---DFVACM-----------G 475 (659)
Q Consensus 414 ~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k--~~~~---d~~v~~-----------~ 475 (659)
....+.++++++..++ +++++..||.+|+||+.+ +.+++++..+++.+|+ .|.. +..+.- .
T Consensus 303 ~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~ 381 (428)
T PRK10720 303 WVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV 381 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 5555555555555433 889999999999999999 8999999999999965 4422 112111 1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhcCcce
Q 006150 476 AFFGVVFSSVEIGLLIAVSISFAKILLQVTRPRT 509 (659)
Q Consensus 476 t~~~~~~~~v~~Gl~~Gv~~sl~~~l~~~~rp~~ 509 (659)
++...+..++..|.++|++++++..++|.-|++.
T Consensus 382 ~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~~ 415 (428)
T PRK10720 382 NIGAAELKGMALATIVGIGLSLIFKLISKLRPEE 415 (428)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcccccccCCc
Confidence 2222333588889999999999998877777653
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.92 E-value=1.9e-25 Score=186.45 Aligned_cols=83 Identities=52% Similarity=1.031 Sum_probs=80.8
Q ss_pred cccccccccCCh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhcccCCccccccchhHHHHHHH
Q 006150 80 FPIFEWGRKYNL-KKLRGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLL 158 (659)
Q Consensus 80 ~p~~~w~~~y~~-~~l~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~ 158 (659)
||+++|+++|++ +++++|++||+|++++++||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 006150 159 GTML 162 (659)
Q Consensus 159 ~~~i 162 (659)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8764
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.90 E-value=5e-21 Score=209.49 Aligned_cols=329 Identities=15% Similarity=0.182 Sum_probs=215.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccchhhc-ccCCccccccchhHH-HHHHHHHHhhhccCCCcch
Q 006150 95 RGDLIAGLTIASLCIPQDIGYAKLANLDPQYGLYSSFVPPLIYA-FMGSSRDIAIGPVAV-VSLLLGTMLQNELDPINEK 172 (659)
Q Consensus 95 ~~Di~aGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liya-l~Gss~~~~~Gp~a~-~sl~~~~~i~~~~~~~~~~ 172 (659)
...++.|+.-.+...--.++...+.|+++...+.++.++++++. .+|+..++..|+... ...+....-.. ..++
T Consensus 30 ~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~----~~~~ 105 (429)
T TIGR03616 30 AQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYN----GQGT 105 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhc----ccCC
Confidence 45667777666554333334444458999999999999999997 579988999898543 34333321111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHH
Q 006150 173 AQYQRLAFTATFFAGITQVTLGFFRL----GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSV 248 (659)
Q Consensus 173 ~~~~~~a~~~t~l~Gv~~~~lg~~rl----g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~ 248 (659)
+.+++.+..+++++|++++++|++++ +++.+++|+.|.+-.+..+|+.++...+++..|- +
T Consensus 106 ~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~-------~-------- 170 (429)
T TIGR03616 106 NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS-------G-------- 170 (429)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc-------c--------
Confidence 34577888999999999999999876 5677888888888888888888887666643211 0
Q ss_pred HHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHh----hcC-CCCeEEe-eccCCC
Q 006150 249 VASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYIT----RAD-KQGVQIV-KNIKKG 322 (659)
Q Consensus 249 ~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~----~~~-~~~v~~v-g~ip~g 322 (659)
+ + +|. ++.+++.++....+.|+. +...+.|+++++++++++.+ +.. ..+.+.+ +.-+.+
T Consensus 171 ~----~--~~~----al~tl~~i~l~~l~~~~~-----l~~~avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~~ 235 (429)
T TIGR03616 171 F----D--SWM----AVLTILCIGAVAVFTRGM-----LQRLLILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWFG 235 (429)
T ss_pred c----c--cHH----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhcCCCccccCcccccCcccc
Confidence 0 1 232 222222222222233332 12226789999999988764 321 1233333 233345
Q ss_pred CCCCCccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCC--hhHHHHHhhhhhhhhccccccCccchh
Q 006150 323 INPSSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDG--NKEMVALGAMNVVGSMTSCYVATGSFS 400 (659)
Q Consensus 323 ~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~--nqEl~a~G~aNi~~s~fg~~p~t~s~s 400 (659)
+|++..|.+++ ..+. ..+..++++++|+++..++.++..+++.|+ ||++.++|++|+++|+||+.|.+.+..
T Consensus 236 lP~~~~p~f~~--~~il----~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~e 309 (429)
T TIGR03616 236 LPNFHTPVFNA--NAML----LIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAE 309 (429)
T ss_pred CCcCCCceEcH--HHHH----HHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceee
Confidence 66666665443 3332 334567788999999999988877777665 899999999999999999999885533
Q ss_pred hhHHHHhhCCCchhhHHHHHHHHHHHHHHhhh----hhhhccHHHHHHHHHHHHhhhcCHHHHHHH--hccC
Q 006150 401 RSAVNFMAGCETAVSNIVMSCVVFLTLEFITP----LFKYTPNAILASIIINAVISLIDIGAATLL--WKID 466 (659)
Q Consensus 401 rS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~----l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~k~~ 466 (659)
+..+...+|..+|......++ +++++.+.| ++..||.+|+||+++ +.++++...+++.+ .|.|
T Consensus 310 n~g~i~~T~v~SR~v~~~a~~--~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l~~~~~d 378 (429)
T TIGR03616 310 NIGVMAVTKVYSTLVFVAAAV--FAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIWVQNKVD 378 (429)
T ss_pred eeeeeeecCcchHHHHHHHHH--HHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhccCC
Confidence 334434444444444444443 344445555 999999999999999 89999998898844 3544
No 12
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.84 E-value=3.4e-18 Score=186.08 Aligned_cols=335 Identities=14% Similarity=0.118 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHHHhCCCch-------hhhhhccccchhhcccCCccccccchhH-HHHHHHHHHhhhccCCCcchHHH
Q 006150 104 IASLCIPQDIGYAKLANLDPQ-------YGLYSSFVPPLIYAFMGSSRDIAIGPVA-VVSLLLGTMLQNELDPINEKAQY 175 (659)
Q Consensus 104 v~~~~iPq~iaya~laglpp~-------~GLyss~v~~liyal~Gss~~~~~Gp~a-~~sl~~~~~i~~~~~~~~~~~~~ 175 (659)
.+.+.+|.-++= ..|+++. ..+..+.+.+++-+++|+..++.-||.. ....+......... ........
T Consensus 23 ~~~i~vPliva~--a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~-~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLS--AFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEAS-RGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccc-cCccHHHH
Confidence 345566665543 4678873 4678899999999999999999999844 33433332211100 00001122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccC
Q 006150 176 QRLAFTATFFAGITQVTLGFFR-LGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHH 254 (659)
Q Consensus 176 ~~~a~~~t~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 254 (659)
........+++|++++++|..+ ++++.+++|+-|.+-++.-+|+.++...++++.|.+. ..+.++ .
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~-~~~~~~------------~ 166 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPF-GIADPN------------G 166 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCc-cCcccc------------c
Confidence 2223446799999999999998 6999999999999999999999999999999988621 101110 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH-HhhcCCCCeEEeeccCC-CCCCCCccccc
Q 006150 255 GWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVY-ITRADKQGVQIVKNIKK-GINPSSVNEIY 332 (659)
Q Consensus 255 ~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~-~~~~~~~~v~~vg~ip~-g~p~~~~p~~~ 332 (659)
.+++..+.+++.++++++....+.|++ +...+.|+++++|++++. .++.+ .+.+++.+. .+| +..|. +
T Consensus 167 ~~~~~~~~~a~~~l~~il~~~~~~~g~-----~~~~svLiGiv~G~v~a~~~~g~d---~~~v~~a~w~~~p-fG~P~-~ 236 (433)
T PRK11412 167 KIQLPPFGLSVAVMCLVLAMIIFLPQR-----IARYSLLVGTIVGWILWAFCFPSS---HSLSGELHWQWFP-LGSGG-A 236 (433)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHhCCC---cchhccCCceeec-CCCCC-c
Confidence 134556677777777777666655553 334478899999999754 55552 223333332 222 33442 2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcc----cCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhh
Q 006150 333 FSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQ----LDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMA 408 (659)
Q Consensus 333 ~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~----~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~ 408 (659)
|++.. +...++++++...|+++.-++.++..+++ .+.+|-+.++|++|+++++||++|.+....+..+-..+
T Consensus 237 F~~~~----il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~T 312 (433)
T PRK11412 237 LEPGI----ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQT 312 (433)
T ss_pred cCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhc
Confidence 33333 33345667777888887777766655543 35688999999999999999999999777788888889
Q ss_pred CCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccc
Q 006150 409 GCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFD 469 (659)
Q Consensus 409 G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d 469 (659)
|.++|....+.|+++++..++ ++.++..||.+|++|+.++ .++++-...++.+.|++..+
T Consensus 313 gV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~ 374 (433)
T PRK11412 313 GDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFTA 374 (433)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCc
Confidence 999999999999998888866 7778999999999999984 77777767787777766444
No 13
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.83 E-value=8.1e-19 Score=188.14 Aligned_cols=308 Identities=12% Similarity=0.091 Sum_probs=229.2
Q ss_pred hhhhhccccchhhcc----cCCccccccch-hHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006150 125 YGLYSSFVPPLIYAF----MGSSRDIAIGP-VAVVSLLLGTMLQNELDPINEKAQYQRLAFTATFFAGITQVTLGFFRLG 199 (659)
Q Consensus 125 ~GLyss~v~~liyal----~Gss~~~~~Gp-~a~~sl~~~~~i~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg 199 (659)
+.|.+|.++++++.+ +|..-+...|. ++.++.+....-.. . .....+....+.+|++.++++.+--.
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~--g------~~~~~~~G~ii~ag~~~~li~~~~~~ 128 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGTT--G------DGIAALLGGIIAAGLVYFLISPIVKI 128 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHHHhcc--C------CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999988 33344445554 56666555433221 0 12456778889999999999977322
Q ss_pred hHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 006150 200 FLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGK 279 (659)
Q Consensus 200 ~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~ 279 (659)
|+.|++|+.|.+-++.-+|+.++...++++.|......+.+ ..+..++.+++.++++.++..++.|
T Consensus 129 ~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~--------------~~~~~~l~la~~tl~~il~~~~f~~ 194 (451)
T COG2233 129 RLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPD--------------FGSLENLGLALVTLLIILLINRFGK 194 (451)
T ss_pred HHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCcc--------------cCchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998752221211 1466778888888888887776666
Q ss_pred ccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCC-CCCCCCccccccchHhHHHHHHHHHHHHHHHHHHHHH
Q 006150 280 KNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKK-GINPSSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIA 358 (659)
Q Consensus 280 ~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~-g~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~ 358 (659)
.+ +...+.|+++++|+++++..|.-+ .+.+.+-|. .+|.|..+...|++..+... +.++++.+.|+++
T Consensus 195 g~-----~~~i~ILiGlv~G~~la~~~G~vd--f~~v~~a~w~~~P~~~~fg~~F~~~ail~m----~~v~iV~~~E~~G 263 (451)
T COG2233 195 GF-----LRRIPILIGLVVGYLLALFMGMVD--FSGVAEAPWFALPTPFYFGMAFDWGAILTM----LPVAIVTIVEHTG 263 (451)
T ss_pred hH-----HHHHHHHHHHHHHHHHHHHhCCcC--ccccccCceeeCCcccCCCeeecHHHHHHH----HHHHHHHHHHHhh
Confidence 63 444467899999999999998433 222444433 45555444335554444444 4566778888888
Q ss_pred HHHHHhhhcCcc----cCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHH--hhh
Q 006150 359 IGRTFAAMKDYQ----LDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEF--ITP 432 (659)
Q Consensus 359 ~~~~~a~~~~~~----~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~--l~~ 432 (659)
.-++.++..|++ .+.+|.++++|++++++++||++|.|..-.+..+-..+|.++|......|+++++..++ ++.
T Consensus 264 ~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~a 343 (451)
T COG2233 264 DITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFGA 343 (451)
T ss_pred hhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 777777665554 45678899999999999999999999777788888889999999999999988887766 778
Q ss_pred hhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccC
Q 006150 433 LFKYTPNAILASIIINAVISLIDIGAATLLWKID 466 (659)
Q Consensus 433 l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~ 466 (659)
+++.||.+|++|+.+ ++++++....++.+-|.+
T Consensus 344 l~~sIP~pVlGGa~i-vmFG~Ia~sGir~l~~~~ 376 (451)
T COG2233 344 LIQSIPSPVLGGAML-VLFGMIAASGIRILIRNK 376 (451)
T ss_pred HHHhCChhhhhHHHH-HHHHHHHHHHHHHHHhcc
Confidence 999999999999998 789999888887776544
No 14
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.82 E-value=3.7e-18 Score=185.81 Aligned_cols=343 Identities=14% Similarity=0.087 Sum_probs=206.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh----CCC------chhhhhhccccchhhcc-cCCccccccchhH-HHHHHHHHHh
Q 006150 95 RGDLIAGLTIASLCIPQDIGYAKLA----NLD------PQYGLYSSFVPPLIYAF-MGSSRDIAIGPVA-VVSLLLGTML 162 (659)
Q Consensus 95 ~~Di~aGltv~~~~iPq~iaya~la----glp------p~~GLyss~v~~liyal-~Gss~~~~~Gp~a-~~sl~~~~~i 162 (659)
++++++|++-.+...+--+....+. |++ ....+..+.++++++++ +|....+.-||.. ... .....
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~--~~~~~ 78 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIF--AFMIV 78 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH--HHHGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhh--hhhcc
Confidence 3578888888875544333333222 221 24577889999999999 8888888888732 222 11111
Q ss_pred hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCch
Q 006150 163 QNELDPINEKAQYQRLAFTATFFAGITQVTLGFFRL-GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDI 241 (659)
Q Consensus 163 ~~~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~ 241 (659)
... ..+....++.+....+++|+++++++++++ +++.+++|+.|..+++.++|+.+....++...|.... .+..
T Consensus 79 ~g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~-~~~~- 153 (389)
T PF00860_consen 79 IGM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN-PDGL- 153 (389)
T ss_dssp G--------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS----BTT--
T ss_pred ccc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc-cccc-
Confidence 110 022445678889999999999999999998 4899999999999999999999999999998887421 1110
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCC
Q 006150 242 ISVMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKK 321 (659)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~ 321 (659)
...++.....+..++++.+....+.+++.+ ..+.++++++++++++..+..+.+-. +.+-|.
T Consensus 154 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ailigi~~g~i~~~~~g~~~~~~~-~~~~~~ 215 (389)
T PF00860_consen 154 ------------LVGDGKNLGLAVLTLLFILLLSLFLKGFLR-----KGAILIGIIAGWIVAAILGVVDFSPS-VSSAPW 215 (389)
T ss_dssp ------------B---HHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTTSSH--HHHS-S
T ss_pred ------------ccccccccccccccchhhhhhhhhhhhhcc-----cccchhhhhhhhhhhhcccccccCcc-cccccc
Confidence 012444455566666555555544443222 22678999999999999884322111 222221
Q ss_pred -CCCC---CCccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----ccCChhHHHHHhhhhhhhhccccc
Q 006150 322 -GINP---SSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDY----QLDGNKEMVALGAMNVVGSMTSCY 393 (659)
Q Consensus 322 -g~p~---~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~----~~d~nqEl~a~G~aNi~~s~fg~~ 393 (659)
.+|. +..|. |+ ...+...+..+++.+.|+++...+.++..+. +.+.||-+.++|++|+++++||+.
T Consensus 216 ~~~p~~~~~g~p~--f~----~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~ 289 (389)
T PF00860_consen 216 FSLPSPFPFGWPS--FD----PGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTS 289 (389)
T ss_dssp S--------------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT--
T ss_pred ccccccccccccc--cc----HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCC
Confidence 1221 11222 22 2334444567778888988877777665443 455799999999999999999999
Q ss_pred cCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccc
Q 006150 394 VATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFD 469 (659)
Q Consensus 394 p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d 469 (659)
|.+.+....+.-...|+++|.+++..+++.++..++ ++|++..||.+|+++..++ .++++-...++.+.+.+..|
T Consensus 290 ~~t~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~~ 366 (389)
T PF00860_consen 290 PTTTYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLDS 366 (389)
T ss_dssp -EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-S
T ss_pred CCccccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccCc
Confidence 988555555555667788899888888877766654 8999999999998887663 33333336666665555543
No 15
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=99.75 E-value=1.5e-18 Score=156.45 Aligned_cols=117 Identities=38% Similarity=0.611 Sum_probs=104.3
Q ss_pred CCccccCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHH
Q 006150 527 YPEATKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLE 606 (659)
Q Consensus 527 ~~~~~~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~ 606 (659)
|++.++.+++.|++++|+|+|+|++++++++.+++.+.+++.+ .....+.+||||++|++||++|+++|.++.++++
T Consensus 1 y~~~~~~~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~ 77 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIK---KRQTIKNVILDMSGVSFIDSSGIQALVDIIKELR 77 (117)
T ss_dssp SCEEEEETTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--H---TSSSSSEEEEEETTESEESHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCEEEEEEeeEEEHHHHHHHHHHHHHhhhccccccc---ccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHH
Confidence 5677788999999999999999999999999887765321110 1345789999999999999999999999999999
Q ss_pred hcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHH
Q 006150 607 KREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADA 646 (659)
Q Consensus 607 ~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~A 646 (659)
++|++++++++++++++.|+++|+.+.++++++|+|++||
T Consensus 78 ~~g~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~s~~~A 117 (117)
T PF01740_consen 78 RRGVQLVLVGLNPDVRRILERSGLIDFIPEDQIFPSVDDA 117 (117)
T ss_dssp HTTCEEEEESHHHHHHHHHHHTTGHHHSCGGEEESSHHHH
T ss_pred HCCCEEEEEECCHHHHHHHHHcCCChhcCCCCccCCHHHC
Confidence 9999999999999999999999999999999999999998
No 16
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=99.66 E-value=3.7e-16 Score=138.35 Aligned_cols=102 Identities=25% Similarity=0.377 Sum_probs=93.7
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006150 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+|+|+|++.+++.+.+++.+ ++.+.+++||++|++||+||+++|.++.++++++|++
T Consensus 5 ~~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~-----------~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~ 73 (106)
T TIGR02886 5 VKGDVLIVRLSGELDHHTAERVRRKIDDAIER-----------RPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGE 73 (106)
T ss_pred EECCEEEEEEecccchhhHHHHHHHHHHHHHh-----------CCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999999776642 2368999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHHHH
Q 006150 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAV 647 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av 647 (659)
++++|+++++++.|+++|+.+.+ ++|++.++|+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~a~ 106 (106)
T TIGR02886 74 VIVCNVSPAVKRLFELSGLFKII---RIYESEEEAL 106 (106)
T ss_pred EEEEeCCHHHHHHHHHhCCceEE---EEcCChHHhC
Confidence 99999999999999999999988 6999999874
No 17
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=99.63 E-value=1.3e-15 Score=135.66 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006150 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
.+++.+++++|+|+|+|++++++++.+.+.+ ...+.||+||++|++||+||+++|.+++++++++|+++
T Consensus 8 ~~~~~v~~l~G~L~~~~a~~~~~~l~~~~~~-----------~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l 76 (109)
T cd07041 8 WDGVLVLPLIGDLDDERAEQLQERLLEAISR-----------RRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGART 76 (109)
T ss_pred eCCEEEEeeeeeECHHHHHHHHHHHHHHHHH-----------cCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeE
Confidence 4689999999999999999999998665532 24679999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHHcCCccccCCcccccCHHHHH
Q 006150 613 ILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAV 647 (659)
Q Consensus 613 ~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av 647 (659)
+++++++++.+.|+++|+.+ +..++|+|++||+
T Consensus 77 ~l~g~~~~v~~~l~~~gl~~--~~~~~~~t~~~Al 109 (109)
T cd07041 77 ILTGIRPEVAQTLVELGIDL--SGIRTAATLQQAL 109 (109)
T ss_pred EEEeCCHHHHHHHHHhCCCh--hhceeeccHHHhC
Confidence 99999999999999999987 3347999999984
No 18
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=99.58 E-value=8.7e-15 Score=128.18 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=83.9
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006150 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|+|+++|++++.+.+.+ +..+.+|+||++|++||+||+++|.+++++++++|++
T Consensus 5 ~~~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~-----------~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~ 73 (100)
T cd06844 5 KVDDYWVVRLEGELDHHSVEQFKEELLHNITN-----------VAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQ 73 (100)
T ss_pred EECCEEEEEEEEEecHhhHHHHHHHHHHHHHh-----------CCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 46789999999999999999999998765532 2368999999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCcccc
Q 006150 612 LILANPGPVVMDKLHASSFTSLI 634 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~ 634 (659)
+.++|+++++++.|+++|+.+.+
T Consensus 74 l~l~~~~~~v~~~l~~~gl~~~~ 96 (100)
T cd06844 74 FVLTGISPAVRITLTESGLDKGX 96 (100)
T ss_pred EEEECCCHHHHHHHHHhCchhhh
Confidence 99999999999999999998754
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.54 E-value=3.9e-12 Score=135.69 Aligned_cols=341 Identities=16% Similarity=0.161 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHH--HHHHHH--HHHhCCCchh---hhh----hccccchhhcccCCccccccchhHHHHHHHHHHhhh
Q 006150 96 GDLIAGLTIASLCI--PQDIGY--AKLANLDPQY---GLY----SSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQN 164 (659)
Q Consensus 96 ~Di~aGltv~~~~i--Pq~iay--a~laglpp~~---GLy----ss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~ 164 (659)
.-+.||+...++.. |-.+=+ +.-.|+++.. .+. ++.+.+++.++.= +.++..++...-+.++.....+
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcCC
Confidence 44667877776443 111112 3345777742 222 3334444444442 5677777654444444433332
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHH
Q 006150 165 ELDPINEKAQYQRLAFTATFFAGITQVTLGFFR-LGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIIS 243 (659)
Q Consensus 165 ~~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~ 243 (659)
. .+..+..+-+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+
T Consensus 101 ~---------~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~-------------- 157 (395)
T TIGR00843 101 I---------SLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAAL-------------- 157 (395)
T ss_pred C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 1 14456778899999999999999 59999999999999999999887653322211
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCCCC
Q 006150 244 VMHSVVASAHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKKGI 323 (659)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~ 323 (659)
.+ .+ +++...++..+..| | +.|.++.++++++|+++++..|..+.+ .+...+
T Consensus 158 ---------~~--~p---ll~~~mll~~l~~~----r-----~~Pr~avl~aLlvG~iva~~~G~~~~~-----~~~~~l 209 (395)
T TIGR00843 158 ---------DG--LF---LICFSMLLCWLASK----A-----FAPRYAMIAALICGIAFSFALGDMNPT-----DLDFKI 209 (395)
T ss_pred ---------HH--hH---HHHHHHHHHHHHHH----H-----hcchHHHHHHHHHHHHHHHHhcCCCcc-----cccccc
Confidence 11 11 13333333333333 2 134447889999999999887743211 111123
Q ss_pred CCC--CccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhcccccc------C
Q 006150 324 NPS--SVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYV------A 395 (659)
Q Consensus 324 p~~--~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p------~ 395 (659)
+.| ..|++++. ..+..++...++.+.....-+-...+.+||+.+.|+-+.+.|++|+++++|||++ +
T Consensus 210 ~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaait 284 (395)
T TIGR00843 210 ALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAIT 284 (395)
T ss_pred ccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHh
Confidence 233 34555432 2233344444444433322333445568999999999999999999999999999 3
Q ss_pred ccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHH---hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccceeh
Q 006150 396 TGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEF---ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDFVA 472 (659)
Q Consensus 396 t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v 472 (659)
+.-+..... .+-++|+-.+++..|++.++..+| +..++..+|.+..+++-=.+.++-+. ..+..-.+ +..+...
T Consensus 285 aAic~G~~a-h~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~-~~l~~a~~-~~~~r~~ 361 (395)
T TIGR00843 285 AAICMGKDA-HEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIA-GNIKIALH-EDQERDA 361 (395)
T ss_pred HHHhcCccc-ccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHhc-CcchhHH
Confidence 322222222 333888999999999999888877 45689999998877765555555443 22222232 2334445
Q ss_pred hhhhhhHHH----Hh---hhhHHHHHHHHHH
Q 006150 473 CMGAFFGVV----FS---SVEIGLLIAVSIS 496 (659)
Q Consensus 473 ~~~t~~~~~----~~---~v~~Gl~~Gv~~s 496 (659)
.++||+.+. ++ +--.|+++|+...
T Consensus 362 a~~tflvtaSg~~~~gigaafWgl~~G~~~~ 392 (395)
T TIGR00843 362 ALIAFLATASGLHFLGIGSAFWGLCAGGLAY 392 (395)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 555555432 33 2345777776543
No 20
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.49 E-value=1.8e-11 Score=141.75 Aligned_cols=344 Identities=11% Similarity=0.094 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC------CCchhhhhhccccchhhcccCCccccccchhHHHHHHHH---HHhhhccCC
Q 006150 98 LIAGLTIASLCIPQDIGYAKLAN------LDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLG---TMLQNELDP 168 (659)
Q Consensus 98 i~aGltv~~~~iPq~iaya~lag------lpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~---~~i~~~~~~ 168 (659)
+-|=+-+.+.++.-+|||+.+.+ +...=-|.|+.+.+++|++||+.|-.++|+++.+.+... .....
T Consensus 372 laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~---- 447 (900)
T TIGR00834 372 LAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCES---- 447 (900)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhh----
Confidence 33444555667777888886653 344456889999999999999999999887776665443 33332
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCC-CCchH-----
Q 006150 169 INEKAQYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTK-KSDII----- 242 (659)
Q Consensus 169 ~~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~-~~~~~----- 242 (659)
..-+|+...+.+.++++++.++++.+...++++|+.+-.--.|-.=++++.+...++.+...-.... ..++-
T Consensus 448 --~~~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~ 525 (900)
T TIGR00834 448 --NGLEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCV 525 (900)
T ss_pred --cCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccc
Confidence 1236888889999999999999999999999999999999999999999999888887755321000 00000
Q ss_pred ------HHH-----------HHHH-----HHccCCCcHHHHHHHHHHHHHHHHHHHhhhc--ccc--ccccccchhhHHH
Q 006150 243 ------SVM-----------HSVV-----ASAHHGWNWQTIAIGASFLSFLLFAKFIGKK--NKK--FFWVPAIAPLISV 296 (659)
Q Consensus 243 ------~~~-----------~~~~-----~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~--~~~--~~~ip~~~~Li~v 296 (659)
... ...+ ...++ .-..++++.+.++.+.+.++.+++. +++ +..+.-.+..++|
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI 604 (900)
T TIGR00834 526 PPKPQGPSVSALLEKDCSKLGGTLGGNNCRFQPN-TALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISI 604 (900)
T ss_pred ccccccccccccccccccccccccccccccccch-HHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHH
Confidence 000 0000 00001 1234455555555555555544321 000 1124555667888
Q ss_pred HHHHHHHHHhhc-CCCCeEEeeccCCCCCCCCccc--------cc----cchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006150 297 ILSTFFVYITRA-DKQGVQIVKNIKKGINPSSVNE--------IY----FSGDYLLKGFRIGVVAGMIGLTEAIAIGRTF 363 (659)
Q Consensus 297 i~~t~~~~~~~~-~~~~v~~vg~ip~g~p~~~~p~--------~~----~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~ 363 (659)
++.+.+.|.++. .... -.+|.++.+ ..|. +. +.+.....++..|+.++++-|+|+-.++...
T Consensus 605 ~~~t~v~~~~~~v~~~k----l~Vp~~f~p-t~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv 679 (900)
T TIGR00834 605 LIMVLVDIFIGDTYTQK----LSVPSGLKV-TNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIV 679 (900)
T ss_pred HHHHHHHHHhccCcccc----cCCCCCcCC-CCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 989999887652 1111 135666552 2221 11 1122345677778888999999987766665
Q ss_pred hhhcCc---ccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhh-----------------CC-CchhhHHHHHHH
Q 006150 364 AAMKDY---QLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMA-----------------GC-ETAVSNIVMSCV 422 (659)
Q Consensus 364 a~~~~~---~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~-----------------G~-~T~~s~iv~a~~ 422 (659)
.++.+. ..-.+-.|+-.|+.|.++|++|-.+.+|+..+|....++ ++ .+|+++++.+++
T Consensus 680 ~~~e~kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lL 759 (900)
T TIGR00834 680 SKKERKLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVL 759 (900)
T ss_pred cCccccCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHH
Confidence 553221 123477899999999999999999999988877665542 22 368999999987
Q ss_pred HHHHHHHhhhhhhhccHHHHHHHHHHHHhhhc
Q 006150 423 VFLTLEFITPLFKYTPNAILASIIINAVISLI 454 (659)
Q Consensus 423 ~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li 454 (659)
+.+.+ +.+|++.+||++||.|+.++.|+.=+
T Consensus 760 iglsv-~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 760 VGLSI-LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred HHHHH-HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 76655 68999999999999999999998755
No 21
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=99.40 E-value=9.5e-13 Score=116.73 Aligned_cols=100 Identities=22% Similarity=0.355 Sum_probs=90.1
Q ss_pred cCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006150 532 KVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 532 ~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
+.+++.+++++|+++|.|+..+++.+.++..+ +..+.+++||+++.+||++|+++|.++.+.++++|++
T Consensus 9 ~~~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~-----------~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~ 77 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHTAPLLREKVTPAAER-----------TGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQ 77 (108)
T ss_pred EECCEEEEEEecccccccHHHHHHHHHHHHHh-----------cCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCE
Confidence 45789999999999999999999999766542 2467899999999999999999999999999999999
Q ss_pred EEEEcCChhHHHHHHHcCCccccCCcccccCHHH
Q 006150 612 LILANPGPVVMDKLHASSFTSLIGEDNIFLTVAD 645 (659)
Q Consensus 612 l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~ 645 (659)
+.++++++++.+.|+++|+.+.+ .+|+|+++
T Consensus 78 ~~l~~~~~~~~~~l~~~~l~~~~---~i~~~~~~ 108 (108)
T TIGR00377 78 LVLVSVSPRVARLLDITGLLRII---PIYPTVEE 108 (108)
T ss_pred EEEEeCCHHHHHHHHHhChhhee---ccCCCCCC
Confidence 99999999999999999999988 58888653
No 22
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=99.38 E-value=3.8e-12 Score=112.26 Aligned_cols=101 Identities=39% Similarity=0.697 Sum_probs=88.0
Q ss_pred ccCCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCC
Q 006150 531 TKVPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREV 610 (659)
Q Consensus 531 ~~~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi 610 (659)
...+++.+++++|+++|.|++.+++++.+..+. .+..+.+|+||++++++|++|+++|.++.++++++|+
T Consensus 5 ~~~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~----------~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~ 74 (107)
T cd07042 5 EEPPGVLIYRIDGPLFFGNAEYFKDRLLRLVDE----------DPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGV 74 (107)
T ss_pred ccCCCEEEEEecCceEeehHHHHHHHHHHHhcc----------CCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCC
Confidence 345789999999999999999999998665432 1224789999999999999999999999999999999
Q ss_pred EEEEEcCChhHHHHHHHcCCccccCCccccc
Q 006150 611 QLILANPGPVVMDKLHASSFTSLIGEDNIFL 641 (659)
Q Consensus 611 ~l~la~~~~~v~~~L~~sg~~~~~~~~~if~ 641 (659)
++.++|+++++.+.++..|+.+.++.+..+.
T Consensus 75 ~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~ 105 (107)
T cd07042 75 ELYLAGLNPQVRELLERAGLLDEIGEENFFP 105 (107)
T ss_pred EEEEecCCHHHHHHHHHcCcHHHhCccccee
Confidence 9999999999999999999998886554443
No 23
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.38 E-value=4.3e-10 Score=127.14 Aligned_cols=332 Identities=12% Similarity=0.137 Sum_probs=220.9
Q ss_pred HHHHHHHhC------CCchhhhhhccccchhhcccCCccccccchhHHHHHH---HHHHhhhccCCCcchHHHHHHHHHH
Q 006150 112 DIGYAKLAN------LDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLL---LGTMLQNELDPINEKAQYQRLAFTA 182 (659)
Q Consensus 112 ~iaya~lag------lpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~---~~~~i~~~~~~~~~~~~~~~~a~~~ 182 (659)
.|+|+.+-+ +...=.|.|..+.+++|++||+-|-.++|+++.+.++ +.....+ .+.+|+...+.+
T Consensus 377 ~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~------~~~dyl~~r~wV 450 (876)
T KOG1172|consen 377 AITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKD------NGLDYLAFRAWV 450 (876)
T ss_pred HhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhh------CCCchhhHHHHH
Confidence 466665543 2233468899999999999999999988877666554 3444433 245788888999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCcccc-CCCCc--h---H----HHHHHH-HHH
Q 006150 183 TFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKF-TKKSD--I---I----SVMHSV-VAS 251 (659)
Q Consensus 183 t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~-~~~~~--~---~----~~~~~~-~~~ 251 (659)
.+++.++.+++..+....+++|+.+..=-.|-.=|+++.+...++.+.++... ....+ . . ....+. -..
T Consensus 451 glW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (876)
T KOG1172|consen 451 GLWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGPECESVSGTL 530 (876)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccccccccCccc
Confidence 99999999999999999999999999999999999999999999977665310 00000 0 0 000000 000
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHhhhccccccc--------cccchhhHHHHHHHHHHHHhh-cCCCCeEEeeccCCC
Q 006150 252 AHHGWNWQTIAIGASFLSFLLFAKFIGKKNKKFFW--------VPAIAPLISVILSTFFVYITR-ADKQGVQIVKNIKKG 322 (659)
Q Consensus 252 ~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~--------ip~~~~Li~vi~~t~~~~~~~-~~~~~v~~vg~ip~g 322 (659)
.+..+.+.+.+++++..+..+......|++|+..+ +.-.+..++|++-+++.|..+ ....++. +|.+
T Consensus 531 ~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl~----vp~~ 606 (876)
T KOG1172|consen 531 LGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKLP----VPSV 606 (876)
T ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCccc----cCcC
Confidence 01113344444444333333333223333333222 334455678888888888765 3333332 3334
Q ss_pred CCCCCcc-------c-cccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---ccCChhHHHHHhhhhhhhhccc
Q 006150 323 INPSSVN-------E-IYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDY---QLDGNKEMVALGAMNVVGSMTS 391 (659)
Q Consensus 323 ~p~~~~p-------~-~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~---~~d~nqEl~a~G~aNi~~s~fg 391 (659)
+|++..+ . ....+..+..++..++.++++-|+|+-.++....++.+. ..-..=+++-.|+.|.++|+||
T Consensus 607 ~~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rke~kLKKgsgyH~DLlllgil~~icsllG 686 (876)
T KOG1172|consen 607 FPPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRKENKLKKGSGYHLDLLLLGILTLICSLLG 686 (876)
T ss_pred CCCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcccccCCCCcchhHHHHHHHHHHHHHHhcC
Confidence 4332211 1 112234566777788889999999987766665543221 1334668999999999999999
Q ss_pred cccCccchhhhHHHHhh-----------------CC-CchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Q 006150 392 CYVATGSFSRSAVNFMA-----------------GC-ETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVISL 453 (659)
Q Consensus 392 ~~p~t~s~srS~v~~~~-----------------G~-~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~l 453 (659)
-.+..|+..+|-...++ |+ ..|++|++.++++.+. .++.|++..||++||.|+-.+.|+.=
T Consensus 687 LPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls-~~~~pvL~~IP~~VL~GvFlYMgv~S 765 (876)
T KOG1172|consen 687 LPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLS-VLLLPVLKLIPMPVLYGVFLYMGVSS 765 (876)
T ss_pred CCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHhhcc
Confidence 99999999888766553 34 3588999999988844 47999999999999999999999875
Q ss_pred c
Q 006150 454 I 454 (659)
Q Consensus 454 i 454 (659)
+
T Consensus 766 L 766 (876)
T KOG1172|consen 766 L 766 (876)
T ss_pred C
Confidence 4
No 24
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.30 E-value=3.3e-09 Score=111.47 Aligned_cols=273 Identities=14% Similarity=0.164 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccC
Q 006150 176 QRLAFTATFFAGITQVTLGFFRL-GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHH 254 (659)
Q Consensus 176 ~~~a~~~t~l~Gv~~~~lg~~rl-g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~ 254 (659)
+..+..+-+++|++.++.|+.++ ++++++||.++..++++|+-+-....-++ .+.+
T Consensus 87 ~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~-----------------------a~~~ 143 (378)
T PF03594_consen 87 FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFT-----------------------ALQA 143 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-----------------------HHHh
Confidence 34566777899999999999995 99999999999999999988876533222 2212
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCCCCCCC--Cccccc
Q 006150 255 GWNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKKGINPS--SVNEIY 332 (659)
Q Consensus 255 ~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~p~~--~~p~~~ 332 (659)
++ . +....++..++.|++.+|+ +.+.+++.+.++++..+.-.. ..++..++.| ..|+++
T Consensus 144 --~P--~-l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~~-----~~~~~~~~~p~~~~P~Fs 204 (378)
T PF03594_consen 144 --DP--L-LVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLHP-----SALQLSLAHPVFTTPEFS 204 (378)
T ss_pred --HH--H-HHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCCc-----cccccccceeEEECCccc
Confidence 12 1 2233333344455555552 345667777777776553221 1122233333 345555
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHh--hC-
Q 006150 333 FSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFM--AG- 409 (659)
Q Consensus 333 ~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~--~G- 409 (659)
+ ...+.+++.+.++.+..--.-+-.+-+.+||+++.|+-+...|++|++.++|||++.+-+--..++... ++
T Consensus 205 ~-----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAaitaAIc~g~eah~ 279 (378)
T PF03594_consen 205 W-----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAITAAICAGPEAHP 279 (378)
T ss_pred H-----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHcCCccCC
Confidence 4 244555667777766655445555667799999999999999999999999999998855555555544 33
Q ss_pred --CCchhhHHHHHHHHHHHHHH---hhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccceehhhhhhhHH----
Q 006150 410 --CETAVSNIVMSCVVFLTLEF---ITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDFVACMGAFFGV---- 480 (659)
Q Consensus 410 --~~T~~s~iv~a~~~ll~ll~---l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~~t~~~~---- 480 (659)
.|--.++++.|+..++..+| +..++...|.+..+.+-=.+.++-+. ..+..-++.++ +..-.++||+.+
T Consensus 280 dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~-~r~aAlvtFlvtaSGi 357 (378)
T PF03594_consen 280 DPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEK-YREAALVTFLVTASGI 357 (378)
T ss_pred CcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcc-hhHHHHHHHHHHHcCC
Confidence 23446899999998888887 45678899998777665445555443 34444444322 233455555543
Q ss_pred HHh---hhhHHHHHHHHHHH
Q 006150 481 VFS---SVEIGLLIAVSISF 497 (659)
Q Consensus 481 ~~~---~v~~Gl~~Gv~~sl 497 (659)
-+. +--.|+++|++.++
T Consensus 358 sl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 358 SLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred CcccccHHHHHHHHHHHHHh
Confidence 222 23457777776543
No 25
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=99.24 E-value=4.6e-11 Score=103.76 Aligned_cols=90 Identities=27% Similarity=0.379 Sum_probs=81.7
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006150 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
.+++.+++++|+++|.|++.+++.+.+..++ ..+.+++|++++.++|++|+++|.++.++++++|+++
T Consensus 6 ~~~~~ii~l~G~l~~~~~~~~~~~~~~~~~~------------~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v 73 (99)
T cd07043 6 RGGVLVVRLSGELDAATAPELREALEELLAE------------GPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRL 73 (99)
T ss_pred ECCEEEEEEeceecccchHHHHHHHHHHHHc------------CCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeE
Confidence 4588999999999999999999988654432 1578999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHHcCCcccc
Q 006150 613 ILANPGPVVMDKLHASSFTSLI 634 (659)
Q Consensus 613 ~la~~~~~v~~~L~~sg~~~~~ 634 (659)
.++++++++.+.|++.|+.+.+
T Consensus 74 ~i~~~~~~~~~~l~~~gl~~~~ 95 (99)
T cd07043 74 VLVNVSPAVRRVLELTGLDRLF 95 (99)
T ss_pred EEEcCCHHHHHHHHHhCcceee
Confidence 9999999999999999998765
No 26
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=99.17 E-value=1.9e-10 Score=103.70 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=86.4
Q ss_pred EEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc
Q 006150 537 LIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN 616 (659)
Q Consensus 537 ~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~ 616 (659)
.++++.|.|+..++..++|.+.+++.. ...+.+++|++.|+||||+|++.|....+.++++|.++.+++
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~-----------~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~ 83 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAA-----------SGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVG 83 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhc-----------CCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 799999999999999999999877654 234569999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCCccccCCcccccCHHHHHH
Q 006150 617 PGPVVMDKLHASSFTSLIGEDNIFLTVADAVS 648 (659)
Q Consensus 617 ~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~ 648 (659)
++|++.+.++.+|+.+.+ .++++.+++..
T Consensus 84 i~p~v~~~~~~~gl~~~~---~~~~~~~~~~~ 112 (117)
T COG1366 84 IQPEVARTLELTGLDKSF---IITPTELEAAL 112 (117)
T ss_pred CCHHHHHHHHHhCchhhc---ccccchHHHHH
Confidence 999999999999998876 35665555544
No 27
>PF13466 STAS_2: STAS domain
Probab=98.98 E-value=1.7e-09 Score=90.42 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=73.4
Q ss_pred EEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006150 539 VRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG 618 (659)
Q Consensus 539 lrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~ 618 (659)
+++.|++++.+++.+++.+.++++. . +.+++|+++|++||++|++.|....+.++++|.++.+.|++
T Consensus 1 l~l~G~l~~~~~~~l~~~l~~~~~~------------~-~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~ 67 (80)
T PF13466_consen 1 LRLSGELDIATAPELRQALQALLAS------------G-RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPS 67 (80)
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHcC------------C-CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4789999999999999999877632 2 68999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCc
Q 006150 619 PVVMDKLHASSFT 631 (659)
Q Consensus 619 ~~v~~~L~~sg~~ 631 (659)
+.+++.++..|+.
T Consensus 68 ~~~~~ll~~~gld 80 (80)
T PF13466_consen 68 PALRRLLELLGLD 80 (80)
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999873
No 28
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=98.83 E-value=5.3e-10 Score=123.37 Aligned_cols=346 Identities=13% Similarity=0.197 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhC------CCchhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhccCCCcchH
Q 006150 100 AGLTIASLCIPQDIGYAKLAN------LDPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNELDPINEKA 173 (659)
Q Consensus 100 aGltv~~~~iPq~iaya~lag------lpp~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~~~~~~~~ 173 (659)
|=+-+.+.++.-+++|+.+-+ +...-.+.++.+.+++|++||+.|-..+|+++.+.+.....- +... ...-
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~-~~~~--~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILY-KFCK--SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc--cccc
Confidence 344455566677777776543 333446889999999999999999999888887765443222 1111 1133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCcccc-CCCCch---H-------
Q 006150 174 QYQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKF-TKKSDI---I------- 242 (659)
Q Consensus 174 ~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~-~~~~~~---~------- 242 (659)
+|++.-....++++++.+++..+...++++|+.+-.=-.|..=++++.+...++.+..+-.. +-..+. .
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57777788999999999999999999999999999999999999999999888887665310 000000 0
Q ss_pred ---------------H---HHHHH----HHHccC-----------CCcHH----HHHHHHHHHHHHHHHHHhh------h
Q 006150 243 ---------------S---VMHSV----VASAHH-----------GWNWQ----TIAIGASFLSFLLFAKFIG------K 279 (659)
Q Consensus 243 ---------------~---~~~~~----~~~~~~-----------~~~~~----~~~ig~~~l~~ll~~~~~~------~ 279 (659)
. .+... ..+.+. ...+. ++++.+.++.+...++.++ +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 0 00000 000000 11222 2233333333333333322 2
Q ss_pred ccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCCCCCCCC-------ccccc-cchHhHHHHHHHHHHHHHH
Q 006150 280 KNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKKGINPSS-------VNEIY-FSGDYLLKGFRIGVVAGMI 351 (659)
Q Consensus 280 ~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~p~~~-------~p~~~-~~~~~~~~~~~~~i~~~iv 351 (659)
+.|+ .+...+..++|++.+.+.+.++.+.... ++|.++.+.. .+.++ ........++..|+.+++.
T Consensus 275 ~vR~--~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL 348 (510)
T PF00955_consen 275 WVRE--IISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTIL 348 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH--hHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHH
Confidence 2222 2455566778888888877765332222 3444443211 11111 1111223445556677777
Q ss_pred HHHHHHHHHHHHhhhcC---cccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhh-----------------CC-
Q 006150 352 GLTEAIAIGRTFAAMKD---YQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMA-----------------GC- 410 (659)
Q Consensus 352 ~~~e~i~~~~~~a~~~~---~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~-----------------G~- 410 (659)
-+.|+-.++....++.+ +..-.+-+|+-.|+.|.++|++|-...+++..+|....++ +.
T Consensus 349 ~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~ 428 (510)
T PF00955_consen 349 FFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVR 428 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEE
Confidence 77776555544433221 1123356789999999999999998888888777655442 22
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhhcC
Q 006150 411 ETAVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVISLID 455 (659)
Q Consensus 411 ~T~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~li~ 455 (659)
.+|+++++..+++.+.+ ++.|++++||++||.|+.++.|+.-++
T Consensus 429 EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL~ 472 (510)
T PF00955_consen 429 EQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSLS 472 (510)
T ss_dssp ---------------------------------------------
T ss_pred EecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeeec
Confidence 46889999988776655 678999999999999999999987654
No 29
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=1.6e-06 Score=89.44 Aligned_cols=221 Identities=12% Similarity=0.135 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCC
Q 006150 177 RLAFTATFFAGITQVTLGFFR-LGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHG 255 (659)
Q Consensus 177 ~~a~~~t~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 255 (659)
..+..+-+++|...++.|++| ++++++-||+++-.+..+|+=+-+.+..++.+ +.
T Consensus 103 ~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGILL~F~l~a~~a~-----------------------~~- 158 (402)
T COG3135 103 AEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGILLRFGLKAFKAL-----------------------PT- 158 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcc-----------------------CC-
Confidence 345677788999999999999 69999999999999999998777664444322 11
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCC--CCCCCCcccccc
Q 006150 256 WNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKK--GINPSSVNEIYF 333 (659)
Q Consensus 256 ~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~--g~p~~~~p~~~~ 333 (659)
++ + +.+..++..++.|.+.+|+ +...+.++|..++...|.-.+ +..+. ..|.+..|++++
T Consensus 159 -~p--~-l~lpmv~~~ll~r~f~pr~---------aV~aalvvgv~va~~~G~~~~-----~~~~~~~~~p~~v~P~Fs~ 220 (402)
T COG3135 159 -QP--L-LVLPMVLAYLLARVFAPRY---------AVIAALVVGVLVAALLGDLHT-----ALVALEISTPTWVTPEFSF 220 (402)
T ss_pred -Ch--H-HHHHHHHHHHHHHHcCchH---------HHHHHHHHHHHHHHHhCcccc-----cccccccCcceeeCCcccH
Confidence 22 1 1122222233446555552 556777888888877664221 11111 123334455544
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhC----
Q 006150 334 SGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAG---- 409 (659)
Q Consensus 334 ~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G---- 409 (659)
...+.+++.+.++.+...-.-+-.+=+.+||+.+++--+.+.|+..+.++.||++.++-. .-|+.-....
T Consensus 221 -----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~pl~~~TGl~sll~ApfG~~t~nLa-AItAAic~gpdaHp 294 (402)
T COG3135 221 -----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPSPLIVATGLASLLSAPFGGHTVNLA-AITAAICTGPDAHP 294 (402)
T ss_pred -----HHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCchHHHHhHHHHHHhcccccceecHH-HHHHHHhcCCCCCC
Confidence 244455666666655543333333445689999999999999999999999999987733 3333333322
Q ss_pred --CCchhhHHHHHHHHHHHHHHhh---hhhhhccHHHHHHH
Q 006150 410 --CETAVSNIVMSCVVFLTLEFIT---PLFKYTPNAILASI 445 (659)
Q Consensus 410 --~~T~~s~iv~a~~~ll~ll~l~---~l~~~iP~~vLa~i 445 (659)
.|.-.+++++++.-+++.+|.+ .++...|++.++.+
T Consensus 295 D~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li~~l 335 (402)
T COG3135 295 DPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLIAAL 335 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 3555799999999999988854 46888999766554
No 30
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.74 E-value=5.4e-07 Score=96.53 Aligned_cols=297 Identities=13% Similarity=0.170 Sum_probs=165.2
Q ss_pred hhhhccccchhhcccCCccccccch-hHHHHHHHHHHhh-hccCCCcch---H----HHHHHHHHHHHHHHHHHHHHHhh
Q 006150 126 GLYSSFVPPLIYAFMGSSRDIAIGP-VAVVSLLLGTMLQ-NELDPINEK---A----QYQRLAFTATFFAGITQVTLGFF 196 (659)
Q Consensus 126 GLyss~v~~liyal~Gss~~~~~Gp-~a~~sl~~~~~i~-~~~~~~~~~---~----~~~~~a~~~t~l~Gv~~~~lg~~ 196 (659)
-++++.+.+++-..||++.++..|| +|-+....+-.-. +.-.+.++. + +.++..-.+.++++++|.++|+.
T Consensus 55 ~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~s 134 (510)
T KOG1292|consen 55 IFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFS 134 (510)
T ss_pred HhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 5678888999999999999999997 4444333222221 211111111 1 22455677889999999999999
Q ss_pred hh-hhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 006150 197 RL-GFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNWQTIAIGASFLSFLLFAK 275 (659)
Q Consensus 197 rl-g~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~l~~ll~~~ 275 (659)
++ |++.+|+++-.+.-.++-+|+-+.-.. +.++..+|. +|+..++++++..
T Consensus 135 Gl~g~l~rfi~Plti~P~v~lvgl~l~~~~-----------------------~~~~~~~we-----I~l~~~llli~fs 186 (510)
T KOG1292|consen 135 GLWGNLLRFIGPLTIVPLVALVGLGLFQDG-----------------------FPKLGKHWE-----ISLPEILLLILFS 186 (510)
T ss_pred hhHHHHHhhcCChhhhhHHHHHhhhhHHhh-----------------------hhhhhhhee-----ecHHHHHHHHHHH
Confidence 97 999999999988888877777654221 111212122 2222222222221
Q ss_pred -H--hhhccc---cccccccchhhHHHHHHHHHHHHh---hcCCC-----CeE-------EeeccCC-CCCC-CCccccc
Q 006150 276 -F--IGKKNK---KFFWVPAIAPLISVILSTFFVYIT---RADKQ-----GVQ-------IVKNIKK-GINP-SSVNEIY 332 (659)
Q Consensus 276 -~--~~~~~~---~~~~ip~~~~Li~vi~~t~~~~~~---~~~~~-----~v~-------~vg~ip~-g~p~-~~~p~~~ 332 (659)
+ ++++.. +...+...+.++++.+..++++++ |...+ +.+ ++..-|. ..|- .++....
T Consensus 187 qy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~P~ 266 (510)
T KOG1292|consen 187 QYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGPPT 266 (510)
T ss_pred HhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCCCc
Confidence 2 211111 111122223566777777777654 22111 000 1111111 1121 1111112
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHH-h
Q 006150 333 FSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMK----DYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNF-M 407 (659)
Q Consensus 333 ~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~----~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~-~ 407 (659)
|+....... +..++++++|+++.=.+.++.. --....||....+|++.+++|+||.-.++..+++..... -
T Consensus 267 f~~~~~f~m----~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~v 342 (510)
T KOG1292|consen 267 FSAGLVFAM----MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGV 342 (510)
T ss_pred ccHHHHHHH----HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEee
Confidence 222333333 3455677778876544444432 223456999999999999999999765554444322222 2
Q ss_pred hCCCchhhHHHHHHHHHHHHHH--hhhhhhhccHHHHHHHHHHHHhhhcC
Q 006150 408 AGCETAVSNIVMSCVVFLTLEF--ITPLFKYTPNAILASIIINAVISLID 455 (659)
Q Consensus 408 ~G~~T~~s~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~ 455 (659)
+...+|..--+.|.++++.-.+ ++.+|..||.++.|++.- .++.|+.
T Consensus 343 TKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c-~~~~mv~ 391 (510)
T KOG1292|consen 343 TKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC-ILFGMVG 391 (510)
T ss_pred eeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHHH
Confidence 3334454445556655555544 788999999999999875 4555543
No 31
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=97.82 E-value=0.0057 Score=63.87 Aligned_cols=253 Identities=14% Similarity=0.205 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHhhhhhh-HHHhhhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHHHHccCCCcHH
Q 006150 181 TATFFAGITQVTLGFFRLGF-LIDFLSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVVASAHHGWNWQ 259 (659)
Q Consensus 181 ~~t~l~Gv~~~~lg~~rlg~-l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (659)
.+.++.|++=++++++|.|. +++.-++-|-+|.+-=.|..=..+|++++.... ..+ + ..+.
T Consensus 146 algilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa----------------~~~-~-~~~i 207 (492)
T PF11840_consen 146 ALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWA----------------NGF-D-MGYI 207 (492)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHH----------------hcc-C-ccHH
Confidence 56788999999999999755 788889999888776667666778888765331 111 1 2333
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhcCCCCeEEeeccCCCCCCCCccccccch----
Q 006150 260 TIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRADKQGVQIVKNIKKGINPSSVNEIYFSG---- 335 (659)
Q Consensus 260 ~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip~g~p~~~~p~~~~~~---- 335 (659)
.+++-.+++++...+.+++|| +.-+| +.-+++.++++..|..- .+. -+.|+|.. ....|++
T Consensus 208 ~fvvi~~tiv~Ya~L~k~~Kr---WLaIP-----l~~~~a~~~a~~lGa~f-~f~----t~pglp~l--nP~YWWge~tG 272 (492)
T PF11840_consen 208 AFVVIIVTIVLYAYLAKIEKR---WLAIP-----LCSILAGVLAFALGAPF-EFT----TEPGLPNL--NPMYWWGEETG 272 (492)
T ss_pred HHHHHHHHHHHHHHHHHhccc---hhhhh-----HHHHHHHHHHHHcCCCc-eee----cCCCCCCC--CCcccccCCcc
Confidence 333333333333333334444 33344 33344556677766532 121 12344321 1122211
Q ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCcccCChhHHHHHhhhhhhhhccccccCccchhh
Q 006150 336 --------DYLLKGFRIGVVAGMIGLTEAIAIGRTFAAM------KDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSR 401 (659)
Q Consensus 336 --------~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~------~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~sr 401 (659)
+.....++.++.....=--+.++ -+.|.+. ++...|.|+.|....+=|++|+.+||--.++|..
T Consensus 273 w~LglP~~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWg- 350 (492)
T PF11840_consen 273 WQLGLPTLEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETKKVLMNVDDTMTMCSIRQIVGSILGGGNIASSWG- 350 (492)
T ss_pred cccCCCcHHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhcceeecccchhHHHHHHHHHhhcccCCcccccch-
Confidence 22334444443211111111111 2333321 2234788999999999999999999977664544
Q ss_pred hHHHHhhCCCc--hhhHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhh-hcCHHHHHHHhccCccce
Q 006150 402 SAVNFMAGCET--AVSNIVMSCVVFLTLEFITPLFKYTPNAILASIIINAVIS-LIDIGAATLLWKIDKFDF 470 (659)
Q Consensus 402 S~v~~~~G~~T--~~s~iv~a~~~ll~ll~l~~l~~~iP~~vLa~ili~~~~~-li~~~~~~~l~k~~~~d~ 470 (659)
|-.--.+=+|. +-..+.++++++++.++.-|.=-.+=.+|+...+++-++- +.+ .. .+.||.+|..-
T Consensus 351 TymIPaaIaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vALlvGVflPLle-AG-mqm~r~~k~sq 420 (492)
T PF11840_consen 351 TYMIPAAIAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVALLVGVFLPLLE-AG-MQMTRKGKTSQ 420 (492)
T ss_pred hhhhhHHHhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHHHHHHHHHHHHH-HH-HHHHhcCCccc
Confidence 33333333444 5577889999888888877743333344555555533322 332 22 35566555443
No 32
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=97.39 E-value=0.00067 Score=57.62 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=54.1
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCcccc
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLI 634 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~ 634 (659)
...+-+|++.|.-+||+|+..|.++.+.++++|..+.+.+++++++...+..|+.+.+
T Consensus 39 ~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~~~~L~~~p~~L~tLa~Ly~l~~~l 96 (99)
T COG3113 39 LDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGNAVTLTGVPEQLRTLAELYNLSDWL 96 (99)
T ss_pred cCeEEEehhhcceechHHHHHHHHHHHHHHHcCCeeEEecCcHHHHHHHHHhCcHhhh
Confidence 4689999999999999999999999999999999999999999999999998886654
No 33
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=92.60 E-value=3.5 Score=47.46 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHH-------hhCC
Q 006150 338 LLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNF-------MAGC 410 (659)
Q Consensus 338 ~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~-------~~G~ 410 (659)
+..-+..++..+++.+-++++.+.. + .+++..-|++-.+..++.++||+.+-..+-.-++... +.|.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l-a-----glpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v~~~~~ 87 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL-A-----GLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVIARVGL 87 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-c-----CCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 3344445677888888888876643 2 3667778999999999999999987553322222111 1222
Q ss_pred Cch----------hhHHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHHHhhhc
Q 006150 411 ETA----------VSNIVMSCVVFLTLEF-ITPLFKYTPNAILASIIINAVISLI 454 (659)
Q Consensus 411 ~T~----------~s~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 454 (659)
... ...+.+|++.++..++ ++.+.+++|.+|+.|.+--+++.++
T Consensus 88 ~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~ 142 (563)
T TIGR00815 88 QYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIG 142 (563)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 211 5566677776666655 8899999999999998766655544
No 34
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=90.85 E-value=0.2 Score=43.83 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=63.3
Q ss_pred cEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEec-CCCccchhHHHHHHHHHHHHHhcCCEEE
Q 006150 535 GVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMS-PVTDIDTSGIHALEGLHRSLEKREVQLI 613 (659)
Q Consensus 535 ~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s-~V~~IDsSgi~~L~~l~~~l~~~gi~l~ 613 (659)
++..++++|.++-.....+.+.+.+.+++ .+.-.+.+|++ .+..++..+.....++.....++=.++.
T Consensus 1 ~il~v~~~g~~t~ed~~~~~~~~~~~~~~-----------~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~A 69 (109)
T PF11964_consen 1 NILAVRVSGKLTEEDYKELLPALEELIAD-----------HGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIA 69 (109)
T ss_dssp S-EEEEEEEEE-HHHHHHHHHHHHHHHTT-----------SSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEE
T ss_pred CEEEEEEeeeeCHHHHHHHHHHHHHHHhc-----------CCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEE
Confidence 46788999999877777777777665432 23457999999 8888877665444433322112225777
Q ss_pred EEcCChhHHHHHHHcCCccccCCcccc--cCHHHHHHHhh
Q 006150 614 LANPGPVVMDKLHASSFTSLIGEDNIF--LTVADAVSSCA 651 (659)
Q Consensus 614 la~~~~~v~~~L~~sg~~~~~~~~~if--~sv~~Av~~~~ 651 (659)
+++.++-.+...+....+ .-.+.++| .+.+||.+|+.
T Consensus 70 vV~~~~~~~~~~~~~~~~-~~~~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 70 VVGDSEWIRMIANFFAAF-PPIEVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp EE-SSCCCHHHHHHHHHH--SSEEEEE--SSHHHHHHHHC
T ss_pred EEECcHHHHHHHHHHHhc-CCCceEEECCCCHHHHHHHHc
Confidence 877665433332222222 11234799 99999999985
No 35
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=89.11 E-value=6.3 Score=45.16 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhh--HHHHhhCC----Cch--
Q 006150 342 FRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRS--AVNFMAGC----ETA-- 413 (659)
Q Consensus 342 ~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS--~v~~~~G~----~T~-- 413 (659)
+.-++..+++.+=|+++.+. . .| +++..-|++-=++-++-++||+.|.--+-..+ ++...+.. .+.
T Consensus 25 l~AGltva~valP~ama~a~-~---aG--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAI-A---AG--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHH-H---cC--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 33456677777777777665 2 33 88999999999999999999998765222211 11111111 222
Q ss_pred ---hhHHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHHHhhhc
Q 006150 414 ---VSNIVMSCVVFLTLEF-ITPLFKYTPNAILASIIINAVISLI 454 (659)
Q Consensus 414 ---~s~iv~a~~~ll~ll~-l~~l~~~iP~~vLa~ili~~~~~li 454 (659)
.+.+.+|++.++..++ ++.+.+|+|.+|+.|.+--.++.++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 3344455555555544 8899999999999998765555544
No 36
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=88.75 E-value=2 Score=35.11 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHH-HHHHHHHHHH--hcCCEEEEEcCChhHHHHH
Q 006150 549 NSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIH-ALEGLHRSLE--KREVQLILANPGPVVMDKL 625 (659)
Q Consensus 549 na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~-~L~~l~~~l~--~~gi~l~la~~~~~v~~~L 625 (659)
+...+++.+.+.+++. +.|+|||++|..+-+|-+. ++..+.+++. ....++.+.|.++++.+.+
T Consensus 2 ~G~~~~~~i~~~l~~~-------------~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 2 DGERLRDEIEPALKEG-------------EKVVLDFEGVESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred ChHHHHHHHHHHHhcC-------------CeEEEECCCcccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 3466777776665542 3499999999888888654 5555555543 3357899999999999888
Q ss_pred HH
Q 006150 626 HA 627 (659)
Q Consensus 626 ~~ 627 (659)
++
T Consensus 69 ~~ 70 (74)
T PF14213_consen 69 KR 70 (74)
T ss_pred HH
Confidence 76
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=87.18 E-value=1.1 Score=38.91 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=58.0
Q ss_pred EEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHHcCCccccCCcccccCHHHHHHHhhhh
Q 006150 580 LIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPK 653 (659)
Q Consensus 580 VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~ 653 (659)
+++|+.+|-+-+...+.-=.+..+.++++|+++++..-+ .+..++|+..|+. +.+++++.+...+.++...+
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHHHHHHHHHHH
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHHHHHHHHHhc
Confidence 589999999999998888899999999999999886332 4789999999986 45678999988888877663
No 38
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=83.35 E-value=1.7 Score=42.53 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=63.7
Q ss_pred CCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEE-cC----ChhHHHHHHHcCCccccCCcccccCHHHHHHH
Q 006150 575 PRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILA-NP----GPVVMDKLHASSFTSLIGEDNIFLTVADAVSS 649 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la-~~----~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~ 649 (659)
..++.+.||+|++-++.-.++--=.+..+.+++.+.++.|+ |- +..+.+.|++.||. +.++.+|.+.-.|.++
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~tsl~aa~~~ 82 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIFTSLPAARQY 82 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhcCccHHHHHH
Confidence 34788999999999998888877788888999889999886 33 34688899999985 4567899999999999
Q ss_pred hhhh
Q 006150 650 CAPK 653 (659)
Q Consensus 650 ~~~~ 653 (659)
|+++
T Consensus 83 ~~~~ 86 (262)
T KOG3040|consen 83 LEEN 86 (262)
T ss_pred HHhc
Confidence 9864
No 39
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=80.37 E-value=14 Score=40.63 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHH----HHHHhCCCc-----hhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhccCCCcch
Q 006150 102 LTIASLCIPQDIG----YAKLANLDP-----QYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNELDPINEK 172 (659)
Q Consensus 102 ltv~~~~iPq~ia----ya~laglpp-----~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~~~~~~~ 172 (659)
++.+++..-++++ .+...|-++ .-++.+-.+++++-++||+.+..+... .+.+... ++ . .
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~---~~~~~~~--tg-~-----~ 293 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQ---NVGLVQL--TG-V-----K 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhh---hHHHHHH--hC-C-----C
Confidence 3455555555444 445556432 268999999999999999876443222 1111110 11 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHhhhHhHHHHHhhH
Q 006150 173 AQYQRLAFTATFFAGITQVTLGFF-RLGFLIDFLSHAAIVGFMGG 216 (659)
Q Consensus 173 ~~~~~~a~~~t~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g 216 (659)
.. ....++|++.++++++ +++.+..++|.||+.|.+..
T Consensus 294 sr------~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~ 332 (406)
T TIGR03173 294 SR------YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV 332 (406)
T ss_pred ch------HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 01 1236778888888887 57889999999999985443
No 40
>PRK11660 putative transporter; Provisional
Probab=77.43 E-value=23 Score=40.92 Aligned_cols=171 Identities=10% Similarity=0.092 Sum_probs=116.7
Q ss_pred cccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhh
Q 006150 329 NEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMA 408 (659)
Q Consensus 329 p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~ 408 (659)
.+++...+++..++.++++..+.++.......+...++.+.+-+..-.=.+.=++.++|++-++-..+-+........++
T Consensus 273 ~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT 352 (568)
T PRK11660 273 LSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATS 352 (568)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCc
Confidence 34455567888888888888888887777777777777777777777777888899999998877667677777888888
Q ss_pred CCCchhhHHHHHHHHHHH--HHHhhhhhhhccHHHHHHHHHHHHhhhcCHHHHHHHhccCccceehhh-hhhhHHHHhhh
Q 006150 409 GCETAVSNIVMSCVVFLT--LEFITPLFKYTPNAILASIIINAVISLIDIGAATLLWKIDKFDFVACM-GAFFGVVFSSV 485 (659)
Q Consensus 409 G~~T~~s~iv~a~~~ll~--ll~l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l~k~~~~d~~v~~-~t~~~~~~~~v 485 (659)
+-.+=+++++..+.++.. ++-.-|.-..=+.-+.+++-+.-.-.+. +.+++..|.+..-+++++ .+.+.-+..|+
T Consensus 353 ~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi 430 (568)
T PRK11660 353 PISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVV--DLLRHAPKDDIIVMLLCMSLTVLFDMVIAI 430 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 887888888877665544 3334454444444455555543332333 233445555555665544 45566778899
Q ss_pred hHHHHHHHHHHHHHHH
Q 006150 486 EIGLLIAVSISFAKIL 501 (659)
Q Consensus 486 ~~Gl~~Gv~~sl~~~l 501 (659)
..|+.+++++-+...-
T Consensus 431 ~~Gi~~s~~~~~~~~~ 446 (568)
T PRK11660 431 SVGIVLASLLFMRRIA 446 (568)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999887655543
No 41
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=76.93 E-value=11 Score=41.78 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHhCCCc------hhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhcc
Q 006150 97 DLIAGLTIASLCIPQDIG----YAKLANLDP------QYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNEL 166 (659)
Q Consensus 97 Di~aGltv~~~~iPq~ia----ya~laglpp------~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~ 166 (659)
.+..=+.++++..-++++ .+..+|.++ .-++.+-.+++++-++||+.+.-.......+ +.. ++
T Consensus 235 ~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~--~~~---T~-- 307 (415)
T TIGR00801 235 AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV--IAL---TR-- 307 (415)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee--eee---cC--
Confidence 333445555555555554 455667532 3689999999999999998655443221110 000 00
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhh
Q 006150 167 DPINEKAQYQRLAFTATFFAGITQVTLGFF-RLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGF 229 (659)
Q Consensus 167 ~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~ 229 (659)
-... .....+|++.++++++ +++.+...+|.||+.|.....--.+..+.++.+
T Consensus 308 -----~~sr-----~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l 361 (415)
T TIGR00801 308 -----VASR-----WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRIL 361 (415)
T ss_pred -----CCch-----HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 1457778888888888 589999999999999877655555555555554
No 42
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=75.96 E-value=10 Score=32.89 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=54.3
Q ss_pred EEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHH---HhcCCEEE
Q 006150 537 LIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSL---EKREVQLI 613 (659)
Q Consensus 537 ~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l---~~~gi~l~ 613 (659)
-++++.|.=|=.|+..|-+-+.+|+++--+ .+.+.+.+++ .+.|+++|..++|.++.+.+ .++|.++.
T Consensus 10 g~l~i~GeSypEn~~~Fy~Pi~~wl~~Yl~--------~~~~~i~~~~-~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~ 80 (99)
T PF09345_consen 10 GRLEISGESYPENAFAFYQPILDWLEAYLA--------EPNKPITFNF-KLSYFNTSSSKALMDIFDLLEDAAQKGGKVT 80 (99)
T ss_pred CEEEEecccCccCHHHHHHHHHHHHHHHHh--------CCCCcEEEEE-EEEEEecHhHHHHHHHHHHHHHHHhcCCcEE
Confidence 468889999999999999999999976421 1345677888 58899999999999998888 45566665
Q ss_pred E
Q 006150 614 L 614 (659)
Q Consensus 614 l 614 (659)
+
T Consensus 81 v 81 (99)
T PF09345_consen 81 V 81 (99)
T ss_pred E
Confidence 4
No 43
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=74.97 E-value=50 Score=36.69 Aligned_cols=117 Identities=9% Similarity=-0.038 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHhCCCc------hhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhccC
Q 006150 98 LIAGLTIASLCIPQDI----GYAKLANLDP------QYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNELD 167 (659)
Q Consensus 98 i~aGltv~~~~iPq~i----aya~laglpp------~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~~ 167 (659)
++.-+.++++.+-+.+ |.+...+-++ .-|+.+-.+++++-++||+.+..+.+-..- ++..+-+..
T Consensus 242 il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvG--vi~~TgV~S--- 316 (433)
T PRK11412 242 ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIG--LLTQTGDYR--- 316 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhh--hhhhcCCch---
Confidence 4555555555544443 3344555432 348999999999999999876654432111 111111111
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhcC
Q 006150 168 PINEKAQYQRLAFTATFFAGITQVTLGFFR-LGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFLG 231 (659)
Q Consensus 168 ~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~lG 231 (659)
=-....+|++++++|++. ++.+..-+|.||++|.+.-.--.++.++++.+-+
T Consensus 317 ------------R~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~~Fg~I~~~Gi~~l~~ 369 (433)
T PRK11412 317 ------------RRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLVSYLPLLGSALVFSQQ 369 (433)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123567788999999884 7889999999999998877777777777766643
No 44
>PRK09928 choline transport protein BetT; Provisional
Probab=74.64 E-value=1.6e+02 Score=34.54 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc
Q 006150 552 YVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN 616 (659)
Q Consensus 552 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~ 616 (659)
.-|+|+.+.+....++ + --.|+|.++.-+++++.++++++|.+..+..
T Consensus 528 ~w~~RL~~~~~~p~~~--------~---------~~~f~~~~~~pA~~~v~~el~~~g~~~~~~~ 575 (679)
T PRK09928 528 NWKQRLSRVMNYPGTR--------Y---------TRRMLDTVCRPAMEEVAQELRLRGAYVELNE 575 (679)
T ss_pred cHHHHHHHHhcCCCHH--------H---------HHHHHHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4788887776542111 0 2368999999999999999999999988864
No 45
>COG5439 Uncharacterized conserved protein [Function unknown]
Probab=74.61 E-value=6.6 Score=33.22 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=37.0
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhc-CCEEEEEcCC
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKR-EVQLILANPG 618 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~-gi~l~la~~~ 618 (659)
+...++|+.+..|++||||..|.++.-+.+++ ++++++-+-+
T Consensus 46 ps~mtinL~gL~FLNSSGInlLakftievRk~pd~~fvvrGs~ 88 (112)
T COG5439 46 PSEMTINLEGLEFLNSSGINLLAKFTIEVRKKPDTSFVVRGSK 88 (112)
T ss_pred hHHhEEecccceeecccchHHHHhhhhhhhcCCCceEEEecCC
Confidence 45699999999999999999999999998877 7898887654
No 46
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=67.82 E-value=14 Score=38.55 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=63.1
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP-----GPVVMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
...++|+||.+|-..-...+..-.+..+.+++.|.++.++.- +++-.++++..|+.. ++++++|.+...+..++
T Consensus 21 ~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFSSAYAIADYL 99 (306)
T ss_pred hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccChHHHHHHHH
Confidence 367999999999888888888888999999999999988732 345778899999876 77889999988887777
Q ss_pred hhh
Q 006150 651 APK 653 (659)
Q Consensus 651 ~~~ 653 (659)
.+.
T Consensus 100 k~~ 102 (306)
T KOG2882|consen 100 KKR 102 (306)
T ss_pred HHh
Confidence 544
No 47
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=66.78 E-value=69 Score=28.52 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=71.0
Q ss_pred CCcEEEEEeCCc-eeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCC--ccchhHHHHHHHHHHHHHhcC
Q 006150 533 VPGVLIVRVDSA-IYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVT--DIDTSGIHALEGLHRSLEKRE 609 (659)
Q Consensus 533 ~~~v~Ilrl~g~-L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~--~IDsSgi~~L~~l~~~l~~~g 609 (659)
.+++.|+.+.+. .--.+.+...+-+....+ .+...+++|-++++ |.|.+. +.--++.+.+...+
T Consensus 3 ~~~~~v~~~~s~~~~i~~~qdalDLi~~~~~------------~~~~~i~l~~~~l~~dFF~L~T-glAGeiLQKf~NY~ 69 (113)
T PF13788_consen 3 KNGIRVAEVSSDEPLISDEQDALDLIGTAYE------------HGADRIILPKEALSEDFFDLRT-GLAGEILQKFVNYR 69 (113)
T ss_pred CCCeEEEEEeCCCCeecchhHHHHHHHHHHH------------cCCCEEEEEhHHCCHHHHHhhc-chHHHHHHHHHhhc
Confidence 356666666544 445565555555544321 34678999988764 677665 66778899999999
Q ss_pred CEEEEEc------CChhHHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006150 610 VQLILAN------PGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 610 i~l~la~------~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
+++.+++ .+...++....++--..+ ++++|.+||++|.
T Consensus 70 iklAivGD~s~~~~S~~l~dfi~EsN~G~~~---~F~~~~~eA~~~L 113 (113)
T PF13788_consen 70 IKLAIVGDFSAYATSKSLRDFIYESNRGNHF---FFVPDEEEAIAWL 113 (113)
T ss_pred eeEEEEEcccccccchhHHHHHHHhcCCCeE---EEECCHHHHHhhC
Confidence 9999983 455677777777655555 7899999999874
No 48
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=66.57 E-value=20 Score=39.81 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHH----HhhhcCcccCChhHHHHHhhhhhhhhc--------cccccCccchhhhHHHHh
Q 006150 348 AGMIGLTEAIAIGRT----FAAMKDYQLDGNKEMVALGAMNVVGSM--------TSCYVATGSFSRSAVNFM 407 (659)
Q Consensus 348 ~~iv~~~e~i~~~~~----~a~~~~~~~d~nqEl~a~G~aNi~~s~--------fg~~p~t~s~srS~v~~~ 407 (659)
..+...-+..++++. +.++++.+-...-|=++.=++-+++++ .|-...|+.+||-.....
T Consensus 257 ~~~E~~G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~a 328 (451)
T COG2233 257 TIVEHTGDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGA 328 (451)
T ss_pred HHHHHhhhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHH
Confidence 334555555555544 444456555555566677777777776 356677888888766554
No 49
>PRK10720 uracil transporter; Provisional
Probab=64.73 E-value=36 Score=37.75 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHhCCC------chhhhhhccccchhhcccCCccccccchh-HHHHHHHHHHhhhccCC
Q 006150 100 AGLTIASLCIPQDIGYA----KLANLD------PQYGLYSSFVPPLIYAFMGSSRDIAIGPV-AVVSLLLGTMLQNELDP 168 (659)
Q Consensus 100 aGltv~~~~iPq~iaya----~laglp------p~~GLyss~v~~liyal~Gss~~~~~Gp~-a~~sl~~~~~i~~~~~~ 168 (659)
.=+..+++...++++-. ...+-+ ..-++.+-.+++++-++||+++..+.+-. ++++ .++
T Consensus 229 ~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia------~T~---- 298 (428)
T PRK10720 229 TILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMA------ITR---- 298 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceee------ecc----
Confidence 33444455556766632 223322 24589999999999999998755442210 0000 001
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHHHHhh-hhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhhc
Q 006150 169 INEKAQYQRLAF-TATFFAGITQVTLGFF-RLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGFL 230 (659)
Q Consensus 169 ~~~~~~~~~~a~-~~t~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~l 230 (659)
++. ....++|++.+++|++ |++.+...+|.||+.|.....--.+..+.++.+.
T Consensus 299 ---------v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i~~fg~i~~~Gi~~l~ 353 (428)
T PRK10720 299 ---------VYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSLLLYGVIGASGIRVLI 353 (428)
T ss_pred ---------cchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1234578888888886 4788999999999999888777777777777764
No 50
>PRK10444 UMP phosphatase; Provisional
Probab=60.62 E-value=18 Score=36.99 Aligned_cols=73 Identities=7% Similarity=0.139 Sum_probs=53.0
Q ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 578 QFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 578 ~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.+++|+.++-+-+-.-+.--.+..+.++++|++++++.-+ .+..++|++.|+. +.+++++.+...+.+++.+
T Consensus 2 ~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 2 KNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYTSAMATADFLRR 79 (248)
T ss_pred cEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEecHHHHHHHHHHh
Confidence 57899999988777665666668888899999999887432 3478888888873 3456777776666565543
No 51
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=59.85 E-value=17 Score=37.74 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=54.8
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC-----ChhHHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP-----GPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
.+.+++|+.++-+-+..-+.-..+..++++++|++++++.- ..+..+.|++.|+... .++++.+..-+.+++.
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL--AEQLFSSALCAARLLR 79 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--hhhEecHHHHHHHHHH
Confidence 46899999998876666665677888889999999987733 2345678888998543 4678888777766665
Q ss_pred h
Q 006150 652 P 652 (659)
Q Consensus 652 ~ 652 (659)
+
T Consensus 80 ~ 80 (279)
T TIGR01452 80 Q 80 (279)
T ss_pred h
Confidence 4
No 52
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=59.58 E-value=28 Score=39.04 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=62.8
Q ss_pred CCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 575 PRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
.+++.|||| +.=++.|+.|-++|.+...+.|++|+.+++..-+|.+....++-=+.+ -|.-+.|-..+|-++....
T Consensus 489 G~P~lvVLD-EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~-~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 489 GDPFLVVLD-EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ-DGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCcEEEec-CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeec-CChHHhcCCHHHHHHHhcC
Confidence 467899999 667899999999999999999999999999999999887766544433 2455788888999888764
No 53
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.61 E-value=32 Score=31.67 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhc---CCEEEEEcCC-------hhHHHHHHHcCCccccCCcccccCHHH
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKR---EVQLILANPG-------PVVMDKLHASSFTSLIGEDNIFLTVAD 645 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~---gi~l~la~~~-------~~v~~~L~~sg~~~~~~~~~if~sv~~ 645 (659)
+++.|.+-+.. .+....+.++.+.++++ ++++.+-+.- +...+.+++.|+...+++.. +.++
T Consensus 54 ~~d~V~lS~~~-----~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~ 125 (137)
T PRK02261 54 DADAILVSSLY-----GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEE 125 (137)
T ss_pred CCCEEEEcCcc-----ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHH
Confidence 35667664443 34555666777777766 6777776642 45778999999755444322 7888
Q ss_pred HHHHhhhhhhh
Q 006150 646 AVSSCAPKLVE 656 (659)
Q Consensus 646 Av~~~~~~l~~ 656 (659)
.++++...+.+
T Consensus 126 i~~~l~~~~~~ 136 (137)
T PRK02261 126 AIDDLKKDLNQ 136 (137)
T ss_pred HHHHHHHHhcc
Confidence 88888876654
No 54
>PLN02645 phosphoglycolate phosphatase
Probab=57.47 E-value=35 Score=36.06 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC-----hhHHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG-----PVVMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
.+.+++|+.+|-+-+..-+..-.+..+.++++|++++++.-+ .++.+.|+..|+. ...+.++.+...+..+.
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~--~~~~~I~ts~~~~~~~l 104 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN--VTEEEIFSSSFAAAAYL 104 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC--CChhhEeehHHHHHHHH
Confidence 689999999988776655555678888899999999887432 3467778888874 33456776655444433
No 55
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=56.73 E-value=20 Score=36.45 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=51.7
Q ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc-----CChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 578 QFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN-----PGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 578 ~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~-----~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.+++|+.++-+-+..-+.-=.+..++++++|++++++. ...++.++|+..|+.. .++.++.+...+.+++.+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~--~~~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA--TLETVFTASMATADYMND 79 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEeeHHHHHHHHHHh
Confidence 468888887766554444444677888889999999874 2456888899988743 456788777766666654
No 56
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=55.83 E-value=2e+02 Score=31.58 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChh-------HHHHHhhhhhhhhccccccCccchhhhHHHHh-hC-C
Q 006150 340 KGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNK-------EMVALGAMNVVGSMTSCYVATGSFSRSAVNFM-AG-C 410 (659)
Q Consensus 340 ~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nq-------El~a~G~aNi~~s~fg~~p~t~s~srS~v~~~-~G-~ 410 (659)
..+..+++..++++..+.++.-.-++.-| .|..| -.++.|+++++=|..-=+|...+.|--....- .+ .
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~ 99 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFP 99 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcC
Confidence 34445667778888877776555444333 33333 34677888888888778888877772222111 11 1
Q ss_pred CchhhH-----HHHHHHHHHHHH--HhhhhhhhccHHHHHHHHH
Q 006150 411 ETAVSN-----IVMSCVVFLTLE--FITPLFKYTPNAILASIII 447 (659)
Q Consensus 411 ~T~~s~-----iv~a~~~ll~ll--~l~~l~~~iP~~vLa~ili 447 (659)
.-.++. +++++++++..+ ++..+.++||.++.++++-
T Consensus 100 ~~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 100 GISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 123333 444444444322 3667899999999999884
No 57
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=55.81 E-value=32 Score=36.04 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=48.6
Q ss_pred CCceEEEEEecCCCccchhHH----HHHHHHHHHHHhcCCEEEEEc--CChhHHHHHHHcCCcccc
Q 006150 575 PRIQFLIVEMSPVTDIDTSGI----HALEGLHRSLEKREVQLILAN--PGPVVMDKLHASSFTSLI 634 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi----~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~sg~~~~~ 634 (659)
+..+.+++|+.+.=.=|..-+ ....+..++++++|+++.++. .++.+.+.|+..|+.+.+
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 457899999988666555433 678899999999999999986 677888999999998654
No 58
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=52.65 E-value=55 Score=36.33 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHH----HHHHhC--CCc--hhhhhhccccchhhcccCCccccccchh-HHHHHHHHHHhhhccCCCcch
Q 006150 102 LTIASLCIPQDIG----YAKLAN--LDP--QYGLYSSFVPPLIYAFMGSSRDIAIGPV-AVVSLLLGTMLQNELDPINEK 172 (659)
Q Consensus 102 ltv~~~~iPq~ia----ya~lag--lpp--~~GLyss~v~~liyal~Gss~~~~~Gp~-a~~sl~~~~~i~~~~~~~~~~ 172 (659)
+..+++..-++++ .+...| .++ .-|+.+-.+++++-+++|+++....+-. ++.+. ++
T Consensus 253 ~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~------T~-------- 318 (429)
T TIGR03616 253 APVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAV------TK-------- 318 (429)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeee------cC--------
Confidence 4444445555544 334444 333 3588888888888889988765543211 11100 01
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhh-hhhHHHhhhHhHHHHHhhHHHHHHHHhhhh
Q 006150 173 AQYQRLA-FTATFFAGITQVTLGFFR-LGFLIDFLSHAAIVGFMGGAAVTIALQQLK 227 (659)
Q Consensus 173 ~~~~~~a-~~~t~l~Gv~~~~lg~~r-lg~l~~~lp~~vi~Gf~~g~gl~i~~sql~ 227 (659)
++ -.....+|++++++|++. ++.+...+|.||+.|.+...--.+..+.++
T Consensus 319 -----v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 319 -----VYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred -----cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 023456688888888885 788999999999999887766677777777
No 59
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=52.61 E-value=22 Score=36.48 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=52.2
Q ss_pred eEEEEEecCCCccchh----HHHHHHHHHHHHHhcCCEEEEEcC---C--hhHHHHHHHcCCccccCCcccccCHHHHHH
Q 006150 578 QFLIVEMSPVTDIDTS----GIHALEGLHRSLEKREVQLILANP---G--PVVMDKLHASSFTSLIGEDNIFLTVADAVS 648 (659)
Q Consensus 578 ~~VILD~s~V~~IDsS----gi~~L~~l~~~l~~~gi~l~la~~---~--~~v~~~L~~sg~~~~~~~~~if~sv~~Av~ 648 (659)
+.+++|+.++-+-+.. .+..-.+..++++++|++++++.- + +++.+.|+..|+. +.++.++.+...+.+
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~ts~~~~~~ 79 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFTPAPAARQ 79 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEcHHHHHHH
Confidence 5789999888765544 445556667778889999988752 2 2588889988974 456788888776666
Q ss_pred Hhhh
Q 006150 649 SCAP 652 (659)
Q Consensus 649 ~~~~ 652 (659)
++.+
T Consensus 80 ~l~~ 83 (257)
T TIGR01458 80 LLEE 83 (257)
T ss_pred HHHh
Confidence 6543
No 60
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=51.70 E-value=46 Score=33.58 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEE-cCChh---HHHHHHHcCCcc-ccCCcccccCHHHHHHHh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILA-NPGPV---VMDKLHASSFTS-LIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la-~~~~~---v~~~L~~sg~~~-~~~~~~if~sv~~Av~~~ 650 (659)
+.+.+++|+.++-.-...-...-.++.+.++++|+++.++ |-..+ ..++|+..|+.. .+ +.++.+-+.+.+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~~~~~~~l 84 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP--EMIISSGEIAVQMI 84 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc--ceEEccHHHHHHHH
Confidence 3678999999887766556677788889999999999885 43222 227888899865 43 35666654444433
No 61
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=51.29 E-value=30 Score=37.39 Aligned_cols=181 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHh-hhHhHHHHHhhHHHHHHHHhhhhhhcCccccCCCCchHHHHHHHH
Q 006150 174 QYQRLAFTATFFAGITQVTLGFF---RLGFLIDF-LSHAAIVGFMGGAAVTIALQQLKGFLGIKKFTKKSDIISVMHSVV 249 (659)
Q Consensus 174 ~~~~~a~~~t~l~Gv~~~~lg~~---rlg~l~~~-lp~~vi~Gf~~g~gl~i~~sql~~~lG~~~~~~~~~~~~~~~~~~ 249 (659)
++.+.-...|+...+..+++|.+ |+.++-+| +|+||+.|++..+-.....+-...-++++
T Consensus 1 ~~~~~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd---------------- 64 (404)
T COG0786 1 MEIHLNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFD---------------- 64 (404)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCC----------------
Q ss_pred HHccCCCcHHHHHHHHHHHHHHHHH--HHhhhccccccccccchhhHHHH---HHHHHHHHhhcCCCCeEEeeccCC--C
Q 006150 250 ASAHHGWNWQTIAIGASFLSFLLFA--KFIGKKNKKFFWVPAIAPLISVI---LSTFFVYITRADKQGVQIVKNIKK--G 322 (659)
Q Consensus 250 ~~~~~~~~~~~~~ig~~~l~~ll~~--~~~~~~~~~~~~ip~~~~Li~vi---~~t~~~~~~~~~~~~v~~vg~ip~--g 322 (659)
.+.++..+-..+-.+-+-. ++++|..|+..|.-..+..++++ ++..++-..+.+..---..|+++- |
T Consensus 65 ------~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GG 138 (404)
T COG0786 65 ------TSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGG 138 (404)
T ss_pred ------cccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCC
Q ss_pred CCCCCccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCcccCChhH
Q 006150 323 INPSSVNEIYFSGDYLLKGFRIGVVAGMIGLTEAIAIGRTFAA----MKDYQLDGNKE 376 (659)
Q Consensus 323 ~p~~~~p~~~~~~~~~~~~~~~~i~~~iv~~~e~i~~~~~~a~----~~~~~~d~nqE 376 (659)
.-.-..=.-.|...-...+..+++..+-++++-...++--+++ |++.+.++++|
T Consensus 139 HGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 139 HGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred CchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCC
No 62
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.66 E-value=62 Score=28.93 Aligned_cols=68 Identities=6% Similarity=0.105 Sum_probs=46.1
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhc---CCEEEEEc-CChhHHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKR---EVQLILAN-PGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~---gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
+.+.|.+-++ |......+.++.++++++ ++.+.+.+ ..++..+.++.+|+.+.++ .=.+.++.+..+.
T Consensus 50 ~~d~V~iS~~-----~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~---~~~~~~~~~~~~~ 121 (122)
T cd02071 50 DVDVIGLSSL-----SGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG---PGTSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEccc-----chhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC---CCCCHHHHHHHHh
Confidence 3567776443 566677788888888887 45665554 3455688899999877763 3356677766553
No 63
>COG2056 Predicted permease [General function prediction only]
Probab=49.19 E-value=3.8e+02 Score=29.02 Aligned_cols=42 Identities=21% Similarity=0.493 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHHHHHHhhh
Q 006150 185 FAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAVTIALQQL 226 (659)
Q Consensus 185 l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql 226 (659)
++=++++.+.++|+.-+...+-.+++.|.++|.++.=....+
T Consensus 6 IsVivMlvLsLlRvnVvlaL~isAlvaGl~~gl~l~eti~~f 47 (444)
T COG2056 6 IAVIVMLVLSLLRVNVVLALIISALVAGLVGGLGLTETINAF 47 (444)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 344677889999999999999999999999999887554444
No 64
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=48.13 E-value=3.4e+02 Score=28.71 Aligned_cols=60 Identities=27% Similarity=0.557 Sum_probs=39.5
Q ss_pred cccccc-----cCCh-hhhhhhHHHHHHHHHHHHHHHHHHHHH-hC-CCch--hhh------hhccccchhhcccC
Q 006150 82 IFEWGR-----KYNL-KKLRGDLIAGLTIASLCIPQDIGYAKL-AN-LDPQ--YGL------YSSFVPPLIYAFMG 141 (659)
Q Consensus 82 ~~~w~~-----~y~~-~~l~~Di~aGltv~~~~iPq~iaya~l-ag-lpp~--~GL------yss~v~~liyal~G 141 (659)
-.+|=| +|.. .-+.+-++.-+..-++++|-|++.|.- +- .||. .-. .=+.+|+++|++||
T Consensus 63 ~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fg 138 (310)
T COG0573 63 GTEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFG 138 (310)
T ss_pred cCccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 446766 4655 667788888888889999999999853 33 4552 111 12556777777766
No 65
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.35 E-value=58 Score=29.80 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=48.4
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCC--EEEEEc--CChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREV--QLILAN--PGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi--~l~la~--~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
.+.+.+ +..|.+-...+.++.+.++++|. -.++++ ..++-.+.|+..|+.+.++.. .++++-+++...
T Consensus 54 adii~i-----Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~g---t~~~~i~~~l~~ 125 (132)
T TIGR00640 54 VHVVGV-----SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPG---TPIPESAIFLLK 125 (132)
T ss_pred CCEEEE-----cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCC---CCHHHHHHHHHH
Confidence 455655 66777888889999999998853 234455 455567889999998887533 366666666655
Q ss_pred hh
Q 006150 653 KL 654 (659)
Q Consensus 653 ~l 654 (659)
.+
T Consensus 126 ~~ 127 (132)
T TIGR00640 126 KL 127 (132)
T ss_pred HH
Confidence 44
No 66
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.88 E-value=1.6e+02 Score=30.20 Aligned_cols=168 Identities=14% Similarity=0.051 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHH-HHhhhccccccccccchhhHHHHHHHHHHHHh-hcCCCCeEEeeccCC-CCCCCCccccccchHhHH
Q 006150 263 IGASFLSFLLFA-KFIGKKNKKFFWVPAIAPLISVILSTFFVYIT-RADKQGVQIVKNIKK-GINPSSVNEIYFSGDYLL 339 (659)
Q Consensus 263 ig~~~l~~ll~~-~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~-~~~~~~v~~vg~ip~-g~p~~~~p~~~~~~~~~~ 339 (659)
..++.+.+.... +++.+++.+....+....+++.++......-. +.+.. -.+...+|. .+|. ...+++...+.+.
T Consensus 74 ~~l~~l~~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~-~~i~~~lp~~~~p~-~~~~~~~~~~~~~ 151 (280)
T PF00916_consen 74 VALVFLLIIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIV-GEIPSGLPPPSLPS-FDISWSLILDLLP 151 (280)
T ss_pred HHHHHHhhhhhhhhhccccccccccccceeeehhhhhhhhhhhcccccccc-ccccccCccccCcc-cccccccccccch
Confidence 334444443322 34444544444455555556655555544322 11111 112222443 4552 1222333455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHH
Q 006150 340 KGFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVM 419 (659)
Q Consensus 340 ~~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~ 419 (659)
.++.++++..+.++...-+.++....+.+.+-+.--.=.+.=++.++||+-+|...+-+...-..+.++.--+-++++++
T Consensus 152 ~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~ 231 (280)
T PF00916_consen 152 TALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFV 231 (280)
T ss_pred hHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHH
Confidence 78888887777777777777766666666665555666788888999999888877778887788888888888888888
Q ss_pred HHHHHHHHHHhhh
Q 006150 420 SCVVFLTLEFITP 432 (659)
Q Consensus 420 a~~~ll~ll~l~~ 432 (659)
.++++...-++..
T Consensus 232 l~~l~~~~~~l~~ 244 (280)
T PF00916_consen 232 LLVLLFLAPLLAY 244 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666555443
No 67
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=45.55 E-value=99 Score=30.40 Aligned_cols=66 Identities=9% Similarity=0.177 Sum_probs=46.2
Q ss_pred EEEEEeCCcee---eechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006150 536 VLIVRVDSAIY---FSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 536 v~Ilrl~g~L~---F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
+.+++++|.+. -.....+.+.+.++-. .++++.|+|+... ..-|....+.+.+..+.+++.+..+
T Consensus 2 v~vi~i~g~i~~~~~~~~~~l~~~l~~a~~-----------d~~i~~ivl~~~s-~Gg~~~~~~~i~~~i~~~~~~~kpv 69 (208)
T cd07023 2 IAVIDIEGTISDGGGIGADSLIEQLRKARE-----------DDSVKAVVLRINS-PGGSVVASEEIYREIRRLRKAKKPV 69 (208)
T ss_pred EEEEEEEEEEcCCCCCCHHHHHHHHHHHHh-----------CCCCcEEEEEEEC-CCCCHHHHHHHHHHHHHHHhcCCcE
Confidence 57889999998 5666777777754322 3568899998864 4567777777777777777655554
Q ss_pred E
Q 006150 613 I 613 (659)
Q Consensus 613 ~ 613 (659)
+
T Consensus 70 i 70 (208)
T cd07023 70 V 70 (208)
T ss_pred E
Confidence 3
No 68
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=45.42 E-value=96 Score=30.67 Aligned_cols=68 Identities=7% Similarity=0.147 Sum_probs=42.7
Q ss_pred cEEEEEeCCceeeech-------HHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHh
Q 006150 535 GVLIVRVDSAIYFSNS-------NYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEK 607 (659)
Q Consensus 535 ~v~Ilrl~g~L~F~na-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~ 607 (659)
+|.|+.+.|+|.-.+. ..+.+.+.+. ...++++.|+|+... ...|.+..+.+.+..+.+++
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a-----------~~d~~v~~ivL~~~s-~Gg~~~~~~~~~~~l~~~~~ 68 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDA-----------RLDPKVKAIVLRVNS-PGGSVTASEVIRAELAAARA 68 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHH-----------hhCCCceEEEEEEcC-CCcCHHHHHHHHHHHHHHHh
Confidence 4567777777765543 3344444322 234678999998654 56787777777777777777
Q ss_pred cCCEEEE
Q 006150 608 REVQLIL 614 (659)
Q Consensus 608 ~gi~l~l 614 (659)
.++.++-
T Consensus 69 ~~kpVia 75 (211)
T cd07019 69 AGKPVVV 75 (211)
T ss_pred CCCCEEE
Confidence 6655543
No 69
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=43.12 E-value=1.4e+02 Score=30.84 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=20.9
Q ss_pred hhhhHHHhhhHhHHHHHhhHHHHHH
Q 006150 197 RLGFLIDFLSHAAIVGFMGGAAVTI 221 (659)
Q Consensus 197 rlg~l~~~lp~~vi~Gf~~g~gl~i 221 (659)
-...+++.+|+.++.|+..+.|++=
T Consensus 165 ~v~~il~~iP~~v~~Gl~vaggmLP 189 (265)
T TIGR00822 165 AVQAMLKAIPEVVTHGLQIAGGIIV 189 (265)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhhHH
Confidence 3577899999999999988877764
No 70
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.28 E-value=59 Score=29.91 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=42.5
Q ss_pred ccchhHHHHHHHHHHHHHhcCC--EEEEEcCC-----hh---HHHHHHHcCCccccCCcccccCHHHHHHHhhhhhh
Q 006150 589 DIDTSGIHALEGLHRSLEKREV--QLILANPG-----PV---VMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKLV 655 (659)
Q Consensus 589 ~IDsSgi~~L~~l~~~l~~~gi--~l~la~~~-----~~---v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l~ 655 (659)
.+-.+....+.++.+.++++|. ..++++-. ++ +.+.|++.|+...|++.. +.++.+++...+++
T Consensus 60 ~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 60 SLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDLN 133 (134)
T ss_pred cccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence 3336777788889999988863 33455542 22 456799999866555432 67888888776653
No 71
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=40.76 E-value=57 Score=33.79 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=58.6
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC----Chh-HHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP----GPV-VMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~----~~~-v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
.+.+++|+.+|-+-+...+..=.+..+.++++|++++|..- +++ +.++|+..+..+. .+++++.|-+.+.++..
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~-~~~~i~TS~~at~~~l~ 86 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV-TPDDIVTSGDATADYLA 86 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC-CHHHeecHHHHHHHHHH
Confidence 56899999999999999999999999999999999988632 233 7778887555443 34578888666666665
Q ss_pred hh
Q 006150 652 PK 653 (659)
Q Consensus 652 ~~ 653 (659)
++
T Consensus 87 ~~ 88 (269)
T COG0647 87 KQ 88 (269)
T ss_pred hh
Confidence 43
No 72
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=39.14 E-value=1.4e+02 Score=29.73 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=47.1
Q ss_pred eeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhH--HHHHHHHHHHHHhcCCEEEEEc
Q 006150 545 IYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSG--IHALEGLHRSLEKREVQLILAN 616 (659)
Q Consensus 545 L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSg--i~~L~~l~~~l~~~gi~l~la~ 616 (659)
..|.+++.|.+.+...+++++...- ...-.....++|| .+..+.... .+.|-++.+.+.++|.+++++.
T Consensus 67 v~y~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~DlL~iD--Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 67 VVYLSAEEFIREFADALRDGEIEEF-KDRLRSADLLIID--DIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp EEEEEHHHHHHHHHHHHHTTSHHHH-HHHHCTSSEEEEE--TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ceeecHHHHHHHHHHHHHcccchhh-hhhhhcCCEEEEe--cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 3456667777777666644221100 1112357789999 777776654 7899999999999999999987
No 73
>PHA00736 hypothetical protein
Probab=39.12 E-value=89 Score=24.64 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCchhhhhh-ccccchhhcccCCccccccchhHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHH
Q 006150 112 DIGYAKLANLDPQYGLYS-SFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNELDPINEKAQYQRLAFTATFFAGIT 189 (659)
Q Consensus 112 ~iaya~laglpp~~GLys-s~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~~~~~~~~~~~~~~a~~~t~l~Gv~ 189 (659)
+++.|+-.|+.|+.+..- -..-.+.|-.-|.-+.+.+|-.+..+++.-..+ ..+|.++....+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdfl----------plfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFL----------PLFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 577788889999876542 334456677777777777776666666554332 23565655556666654
No 74
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=38.74 E-value=1.4e+02 Score=29.48 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=39.2
Q ss_pred EEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHH
Q 006150 536 VLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLE 606 (659)
Q Consensus 536 v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~ 606 (659)
|.+++++|.+. .+.+.+.+.+.+..+ .++++.|+|+... ..-|.+..+.+.+..++++
T Consensus 2 v~vi~i~g~i~-~s~~~l~~~l~~a~~-----------d~~i~~vvl~~~s-~Gg~~~~~~~l~~~i~~~~ 59 (207)
T TIGR00706 2 IAILPVSGAIA-VSPEDFDKKIKRIKD-----------DKSIKALLLRINS-PGGTVVASEEIYEKLKKLK 59 (207)
T ss_pred EEEEEEEEEEe-cCHHHHHHHHHHHhh-----------CCCccEEEEEecC-CCCCHHHHHHHHHHHHHhc
Confidence 67899999998 666777777654332 3568899999863 3346666666666555555
No 75
>PRK11778 putative inner membrane peptidase; Provisional
Probab=38.70 E-value=2.9e+02 Score=29.55 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCc-cchhHHHHHHHHHHHHHhcCCE
Q 006150 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTD-IDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~-IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
.|.+.|++++|.+.-.....+++.+...++.. .++ +.|+|+...-.. ++.++. .....+++++.|+.
T Consensus 89 ~~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A---------~~~-~aVvLridSpGG~v~~s~~--a~~~l~~lr~~~kp 156 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEVESLREEITAILAVA---------KPG-DEVLLRLESPGGVVHGYGL--AASQLQRLRDAGIP 156 (330)
T ss_pred CCeEEEEEEEEEECCCcchhhHHHHHHHHHhc---------cCC-CeEEEEEeCCCCchhHHHH--HHHHHHHHHhcCCC
Confidence 47899999999999888888888887665432 122 579999865433 344332 22224556677777
Q ss_pred EEE
Q 006150 612 LIL 614 (659)
Q Consensus 612 l~l 614 (659)
++.
T Consensus 157 Vva 159 (330)
T PRK11778 157 LTV 159 (330)
T ss_pred EEE
Confidence 655
No 76
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=38.39 E-value=1.4e+02 Score=29.59 Aligned_cols=37 Identities=11% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006150 574 QPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 574 ~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
.++++.|+||.... .-|..+.+.+.+..+++++ +..+
T Consensus 40 d~~i~~Vvl~~~s~-gg~~~~~~~l~~~l~~~~~-~KpV 76 (214)
T cd07022 40 DPDVRAIVLDIDSP-GGEVAGVFELADAIRAARA-GKPI 76 (214)
T ss_pred CCCCcEEEEEEeCC-CCcHHHHHHHHHHHHHHhc-CCCE
Confidence 45689999998654 3466777777777777765 4433
No 77
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=38.31 E-value=83 Score=33.02 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCceEEEEEecCCCccchhHH----HHHHHHHHHHHhcCCEEEEEc--CChhHHHHHHHcCCcccc
Q 006150 575 PRIQFLIVEMSPVTDIDTSGI----HALEGLHRSLEKREVQLILAN--PGPVVMDKLHASSFTSLI 634 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi----~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~sg~~~~~ 634 (659)
+..+.+++|+.+.-.=|-.-+ ....+..++++++|+++.++. .++.+.+.|+..|+.+.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 446789999987544443322 456778888999999999984 577899999999987544
No 78
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=38.12 E-value=81 Score=29.45 Aligned_cols=57 Identities=5% Similarity=0.027 Sum_probs=38.5
Q ss_pred EEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHH
Q 006150 538 IVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLE 606 (659)
Q Consensus 538 Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~ 606 (659)
+++++|+++-...+.+.+.+.++-+ .++.+.|+|+...-. -|.+....+.+..++++
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~-----------d~~~~~ivl~~~s~G-g~~~~~~~i~~~l~~~~ 57 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEA-----------DNSVKAIVLEVNTPG-GRVDAGMNIVDALQASR 57 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHh-----------CCCCceEEEEEECCC-cCHHHHHHHHHHHHHhC
Confidence 4788999998888888888865422 245788999876433 35555555555555554
No 79
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=37.35 E-value=1.6e+02 Score=32.20 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHhCCCc------hhhhhhccccchhhcccCCccccccchhHHHHHHHHHHhhhc
Q 006150 96 GDLIAGLTIASLCIPQDIG----YAKLANLDP------QYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLLGTMLQNE 165 (659)
Q Consensus 96 ~Di~aGltv~~~~iPq~ia----ya~laglpp------~~GLyss~v~~liyal~Gss~~~~~Gp~a~~sl~~~~~i~~~ 165 (659)
.-++.-++..++..-++++ .+..+|.++ .-|+.+-.+++++-++||+++..+....+. .+..+-+..
T Consensus 232 ~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g--~i~~t~v~S- 308 (389)
T PF00860_consen 232 GAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAG--GIAATGVAS- 308 (389)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHH--HHHHHTB---
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccch--hhhhhcccc-
Confidence 3455556666666666655 344566443 248889999999999999976554332211 111111110
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHhhhHhHHHHHhhHHHHHHHHhhhhhh
Q 006150 166 LDPINEKAQYQRLAFTATFFAGITQVTLGFF-RLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGF 229 (659)
Q Consensus 166 ~~~~~~~~~~~~~a~~~t~l~Gv~~~~lg~~-rlg~l~~~lp~~vi~Gf~~g~gl~i~~sql~~~ 229 (659)
--..+.+|++.++++++ +++.+..-+|.||+.|...-.--.++.++++.+
T Consensus 309 --------------r~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i 359 (389)
T PF00860_consen 309 --------------RRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNI 359 (389)
T ss_dssp --------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------ceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhh
Confidence 12346667777777766 468899999999998876655555566666654
No 80
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=35.49 E-value=1.7e+02 Score=30.12 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=44.0
Q ss_pred cCChhHHHHHhhhhhhhhccccccCccchhhhHHHHhhCCCchhhHHHHHHHHHHHHHHhhhhhh
Q 006150 371 LDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSCVVFLTLEFITPLFK 435 (659)
Q Consensus 371 ~d~nqEl~a~G~aNi~~s~fg~~p~t~s~srS~v~~~~G~~T~~s~iv~a~~~ll~ll~l~~l~~ 435 (659)
+-..-||.+.|.+|+-|+ .--=+.+++.-.|+....+|..++-+..-.|+-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGga-vpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGGA-VPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCcccC-CCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999998873 3334567788899999999987666665555555555555544443
No 81
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=34.99 E-value=5.4e+02 Score=28.04 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCChh---HH----HHHhhhhhhhhccccccCccchhhhHHHHh--hCCC
Q 006150 341 GFRIGVVAGMIGLTEAIAIGRTFAAMKDYQLDGNK---EM----VALGAMNVVGSMTSCYVATGSFSRSAVNFM--AGCE 411 (659)
Q Consensus 341 ~~~~~i~~~iv~~~e~i~~~~~~a~~~~~~~d~nq---El----~a~G~aNi~~s~fg~~p~t~s~srS~v~~~--~G~~ 411 (659)
.+..+++..++++..+.++.-.-++.-| .+.+| -+ ++.|+.++.-|+--=+|.....|--....- +..+
T Consensus 7 ~~~aG~va~lvg~tg~~aiv~qaa~a~g--~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~~~~~~ 84 (378)
T PF03594_consen 7 AVSAGFVAVLVGYTGPVAIVLQAAQAAG--ASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLATSLPG 84 (378)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHHHhccC
Confidence 3444567777888777776655554433 33333 22 455677777777777888877775544443 3334
Q ss_pred chhhHHHHHHH-----HHHHHHH--hhhhhhhccHHHHHH----HHHHHHhhhc
Q 006150 412 TAVSNIVMSCV-----VFLTLEF--ITPLFKYTPNAILAS----IIINAVISLI 454 (659)
Q Consensus 412 T~~s~iv~a~~-----~ll~ll~--l~~l~~~iP~~vLa~----ili~~~~~li 454 (659)
..+.-.+.+.+ +++..+. +..+.++||.++.++ +++--+.+.+
T Consensus 85 ~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f 138 (378)
T PF03594_consen 85 YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAF 138 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 44544443333 3333222 566899999976554 4554444444
No 82
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=33.26 E-value=4.7e+02 Score=30.37 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=34.9
Q ss_pred cCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEE
Q 006150 573 YQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILA 615 (659)
Q Consensus 573 ~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la 615 (659)
+.++++.|+||......-+.+.++.+.+..+++++.|+.++-.
T Consensus 90 ~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~ 132 (584)
T TIGR00705 90 DDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAY 132 (584)
T ss_pred cCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4578999999998777777888888888888898888776543
No 83
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.10 E-value=1.2e+02 Score=27.39 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=39.4
Q ss_pred HHHHHHhcCCEEEEE-cCChhHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 601 LHRSLEKREVQLILA-NPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 601 l~~~l~~~gi~l~la-~~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+.+.+.++|+.++++ +..+.-++.|+..|+.-..++. .+++||++.+..
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 567788899999998 4688999999999986555433 899999988764
No 84
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.74 E-value=2.6e+02 Score=28.06 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCcceEEeccccCc------ccc--ccCcCCCccccCCcEEEEEeCCc--eeeechHHH
Q 006150 484 SVEIGLLIAVSISFAKILLQVTRPRTAILGKVPRT------TVY--RNIQQYPEATKVPGVLIVRVDSA--IYFSNSNYV 553 (659)
Q Consensus 484 ~v~~Gl~~Gv~~sl~~~l~~~~rp~~~~lg~~~~t------~~~--~~~~~~~~~~~~~~v~Ilrl~g~--L~F~na~~~ 553 (659)
.+..|+.+|++++++.+-++..|........-|+. +.. ..+++ |-+-+...=.|.|.-|. +.... |-=
T Consensus 55 ~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~~W~~~~-pVa~nr~qD~V~R~vGrpGVvLVg-EG~ 132 (224)
T PF13829_consen 55 WLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRRGWRVTE-PVAVNRTQDAVHRVVGRPGVVLVG-EGP 132 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcCCcccCC-ceeecCccceEEEecCCCcEEEEe-cCC
Confidence 34557777777888888787777554333223331 111 12222 32222222245555443 22221 111
Q ss_pred HHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006150 554 KERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 554 ~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
.+|+.+++++|+++.++-....+++.++.-- --|---|.++.+.+.+.-.+
T Consensus 133 ~~Rv~~Ll~~E~krv~RV~~~vPV~~i~vG~-------gegQVpL~kL~~~l~KLp~~ 183 (224)
T PF13829_consen 133 PSRVKKLLAQEKKRVARVVGNVPVHDIIVGN-------GEGQVPLRKLQKTLMKLPRN 183 (224)
T ss_pred HHHHHHHHHHHHHHhccccCCCCeEEEEecC-------CCCceeHHHHHHHHHhCCcc
Confidence 4566677777765544222333444333321 12334577777777776554
No 85
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=31.55 E-value=1.4e+02 Score=29.75 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEE
Q 006150 574 QPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLI 613 (659)
Q Consensus 574 ~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~ 613 (659)
.++++.|+|+...-.+ +.+.++.+.+..+.+++.++.++
T Consensus 44 d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVi 82 (222)
T cd07018 44 DDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVI 82 (222)
T ss_pred CCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEE
Confidence 4679999999988777 88888888888888887666653
No 86
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=31.51 E-value=4.2e+02 Score=26.65 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 006150 484 SVEIGLLIAVSISFAKIL 501 (659)
Q Consensus 484 ~v~~Gl~~Gv~~sl~~~l 501 (659)
+.+.|..+|+++.+..++
T Consensus 130 ~~~ig~~~g~if~i~il~ 147 (224)
T PF09930_consen 130 GWEIGLVLGLIFFILILL 147 (224)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888777666533
No 87
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=31.42 E-value=4.7e+02 Score=27.55 Aligned_cols=27 Identities=11% Similarity=0.352 Sum_probs=21.6
Q ss_pred EEEeCCceeeechHHHHHHHHHHHHhH
Q 006150 538 IVRVDSAIYFSNSNYVKERILRWLEDE 564 (659)
Q Consensus 538 Ilrl~g~L~F~na~~~~~~i~~~~~~~ 564 (659)
.+.+++.+...++..+.+++++.++++
T Consensus 250 ~i~v~~~ls~~eah~I~~~ie~~i~~~ 276 (304)
T COG0053 250 HIEVDPDLSLEEAHEIADEVEKRIKKE 276 (304)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHh
Confidence 356788888999999999998877664
No 88
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.72 E-value=97 Score=31.77 Aligned_cols=43 Identities=16% Similarity=0.407 Sum_probs=38.2
Q ss_pred CCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006150 575 PRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG 618 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~ 618 (659)
.+++.++|| .....+|..+...+.++.++++++|..+.++.-.
T Consensus 156 ~~p~lllLD-EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLD-EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred cCCCEEEec-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999 7899999999999999999999999999888654
No 89
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=30.40 E-value=93 Score=32.94 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=39.6
Q ss_pred CceEEEEEecCCC-----------ccchhH-HHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHH----cCCcc
Q 006150 576 RIQFLIVEMSPVT-----------DIDTSG-IHALEGLHRSLEKREVQLILANP--GPVVMDKLHA----SSFTS 632 (659)
Q Consensus 576 ~~~~VILD~s~V~-----------~IDsSg-i~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~----sg~~~ 632 (659)
..|++|+|+.+.- .|.... -..+.+..+.++++|+.+.++.- .+.+.+.|+. .+..+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~ 76 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAE 76 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHH
Confidence 4689999997532 122221 24678899999999999999854 4467888887 55544
No 90
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=29.91 E-value=5.4e+02 Score=29.92 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=29.0
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcCCccc
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSL 633 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg~~~~ 633 (659)
+.+++++|-.. +..+++++.|.+.+.-++.+ .+.|+.+|..+-
T Consensus 423 g~~vvvID~d~-------------~~v~~~~~~g~~v~~GDat~--~~~L~~agi~~A 465 (601)
T PRK03659 423 KMRITVLERDI-------------SAVNLMRKYGYKVYYGDATQ--LELLRAAGAEKA 465 (601)
T ss_pred CCCEEEEECCH-------------HHHHHHHhCCCeEEEeeCCC--HHHHHhcCCccC
Confidence 35789999543 23445566788888877664 567888887653
No 91
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=29.88 E-value=2e+02 Score=28.31 Aligned_cols=58 Identities=14% Similarity=0.298 Sum_probs=36.1
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEE-EcCC-h-hHHHHHHHcCCccccCC
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLIL-ANPG-P-VVMDKLHASSFTSLIGE 636 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~l-a~~~-~-~v~~~L~~sg~~~~~~~ 636 (659)
+..+++|...+..=|..|++.++++.+..- +.++++ +.-. + .+.+.+...|....+.+
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K 98 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDIEARLIGSLSPSPLDGVLSK 98 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCCHHHHHHHHHHcCCeEEEec
Confidence 468888887776666679998888876543 455444 3323 2 24555656666555543
No 92
>PLN03211 ABC transporter G-25; Provisional
Probab=29.38 E-value=1.5e+02 Score=35.05 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCCh--hHHHHHHHcCCccccCCcccccCHHHHHHHhhhh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGP--VVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPK 653 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~--~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~ 653 (659)
+++.+++| +..+.+|+.....+.++.+++.++|.+++++.-++ ++.+..++.-+.+. |+-..+-+.+++++++++.
T Consensus 224 ~P~iLlLD-EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 224 NPSLLILD-EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred CCCEEEEe-CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHHHHHHHHHHC
Confidence 35789999 78999999999999999999988888888876654 35565555444432 3333456788888887653
No 93
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.10 E-value=1.1e+03 Score=28.52 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Q 006150 256 WNWQTIAIGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVY 304 (659)
Q Consensus 256 ~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~ 304 (659)
+|...+++|...+++.++.+++++| .|.+.+++.+++|.+++.
T Consensus 11 ~~l~~~~lG~~lll~~l~s~~lkeR------l~Ls~~~v~Ll~GiilGP 53 (810)
T TIGR00844 11 AHVAYSCVGIFSSIFSLVSLFVKEK------LYIGESMVASIFGLIVGP 53 (810)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh------cCCcHHHHHHHHHHHhhh
Confidence 6777888888888888888777656 344477888888877654
No 94
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=27.25 E-value=2.5e+02 Score=28.47 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=19.4
Q ss_pred hhhHHHhhhHhHHHHHhhHHHHH
Q 006150 198 LGFLIDFLSHAAIVGFMGGAAVT 220 (659)
Q Consensus 198 lg~l~~~lp~~vi~Gf~~g~gl~ 220 (659)
...+.+.+|+.+..|+..+.|+.
T Consensus 167 v~~~~~~iP~~v~~gl~vagg~L 189 (238)
T PF03609_consen 167 VQALLNAIPEWVLNGLNVAGGML 189 (238)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 56789999999999988887765
No 95
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=26.72 E-value=4e+02 Score=25.85 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCceeeec-hHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCE
Q 006150 533 VPGVLIVRVDSAIYFSN-SNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQ 611 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~n-a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~ 611 (659)
.+-+.++|+++.+.=-+ .+...+++.+.+.+- ......+..+=|||..-+.==..=.+.|.++.+.+-. +.+
T Consensus 4 r~~~~~vrL~~r~~~Ld~~~~~~~~i~~~l~~W------~~~G~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP~-~~~ 76 (181)
T PF11340_consen 4 RPPVAVVRLDGRLPRLDWPEQVLARILQLLQRW------QAAGNNVAGIQIDFDAATSRLPAYAQFLQQLRQRLPP-DYR 76 (181)
T ss_pred CCceeEEEEEeecccCCCCHHHHHHHHHHHHHH------HHcCCCceEEEEecCccccchHHHHHHHHHHHHhCCC-Cce
Confidence 35678899999887777 677777776665443 2234568889999986543222222455555555443 899
Q ss_pred EEEEcCC
Q 006150 612 LILANPG 618 (659)
Q Consensus 612 l~la~~~ 618 (659)
+.+++..
T Consensus 77 LSIT~L~ 83 (181)
T PF11340_consen 77 LSITALP 83 (181)
T ss_pred EeeEEeh
Confidence 9998763
No 96
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=26.43 E-value=1.7e+02 Score=34.22 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=56.9
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCCh--hHHHHHHHcCCccccCCcccccCHHHHHHHhhh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGP--VVMDKLHASSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~--~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+++.+++| ...+.+|+.....+.+..+++.++|..++++--++ ++.+..++.-+.+. |+...+-+.+|+++++++
T Consensus 184 ~p~vlllD-EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 184 DPPLLFCD-EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred CCCEEEee-CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHHHHHHHH
Confidence 35678899 77999999999999999999988888887775554 57777777665553 444456677888777664
No 97
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=26.33 E-value=1.7e+02 Score=25.97 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=39.3
Q ss_pred cCCEEEEEc-CChhHHHHHHHcCCccccCCcccccCHHHHHHHhhhhhhhcCC
Q 006150 608 REVQLILAN-PGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSCAPKLVEEQP 659 (659)
Q Consensus 608 ~gi~l~la~-~~~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~~~l~~~~~ 659 (659)
+|+++++++ ..+...+.|+..|..-... .--.+++||++.+...+..++|
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~--~~~~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKV--NEPESISELLERLQKMLKGNPP 112 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEec--CCCccHHHHHHHHHHHHcCCCC
Confidence 699999985 5888999999999765422 1235799999999998887776
No 98
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=26.32 E-value=3.4e+02 Score=27.47 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=51.2
Q ss_pred eCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHH-----H-------------------
Q 006150 541 VDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGI-----H------------------- 596 (659)
Q Consensus 541 l~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi-----~------------------- 596 (659)
-+.++.+.+.+++++.+. ..++-.|++|+... -+|++.. .
T Consensus 42 ~~~~~~~~~~~~~~~~~~---------------~~~p~aViFDlDgT-LlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~ 105 (237)
T TIGR01672 42 EQAPIHWISVAQIENSLE---------------GRPPIAVSFDIDDT-VLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKV 105 (237)
T ss_pred ccCCeeEEEHHHHHHhcC---------------CCCCeEEEEeCCCc-cccCcHHHhCCcccCCHHHhhhhcChHHHHHH
Confidence 456688899988888872 12233899998765 5565551 0
Q ss_pred ------------HHHHHHHHHHhcCCEEEEEcCC------hhHHHHHHHcCCccc
Q 006150 597 ------------ALEGLHRSLEKREVQLILANPG------PVVMDKLHASSFTSL 633 (659)
Q Consensus 597 ------------~L~~l~~~l~~~gi~l~la~~~------~~v~~~L~~sg~~~~ 633 (659)
...++.+.++++|+++.++.-+ ..+...++..|+.+.
T Consensus 106 ~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~ 160 (237)
T TIGR01672 106 NNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAM 160 (237)
T ss_pred HHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchh
Confidence 0567778889999999997543 235555556777653
No 99
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.08 E-value=5.8e+02 Score=24.50 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHhhc
Q 006150 263 IGASFLSFLLFAKFIGKKNKKFFWVPAIAPLISVILSTFFVYITRA 308 (659)
Q Consensus 263 ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~ 308 (659)
++++.++..++.+.+-||.+.. .| +.+-+++.=.++.+.++.
T Consensus 77 ~gv~Si~aAllY~~~l~k~~g~--W~--Gi~YG~~~W~ivF~~lnP 118 (173)
T PF11085_consen 77 IGVFSIVAALLYYALLKKFKGP--WP--GILYGLAWWAIVFFVLNP 118 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ch--HHHHHHHHHHHHHHHhcc
Confidence 3444444445555555554431 23 445555554444555543
No 100
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=25.23 E-value=1.3e+02 Score=33.08 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhh---hhhhHHH-hhhHhHHHHHhhHHHHHHH
Q 006150 183 TFFAGITQVTLGFF---RLGFLID-FLSHAAIVGFMGGAAVTIA 222 (659)
Q Consensus 183 t~l~Gv~~~~lg~~---rlg~l~~-~lp~~vi~Gf~~g~gl~i~ 222 (659)
|+....+.+++|.+ |..++-| ++|.||+.|++..+.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 33344444555533 3566666 4899999999998777665
No 101
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=25.09 E-value=1.2e+02 Score=30.59 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=44.2
Q ss_pred EEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEc-----CChhHHHHHHH-cCCccccCCcccccCHHHHHHHhhh
Q 006150 580 LIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILAN-----PGPVVMDKLHA-SSFTSLIGEDNIFLTVADAVSSCAP 652 (659)
Q Consensus 580 VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~-----~~~~v~~~L~~-sg~~~~~~~~~if~sv~~Av~~~~~ 652 (659)
+++|+.+|-.-+..-+..=.+..+.++++|+++.+.. ...+..+.|+. .|+. +..+.++.+...+.++..+
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~--~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD--VSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC--CCHHHeeeHHHHHHHHHHH
Confidence 3566666654444433333566677788899998873 23456777887 5652 3456777776666666653
No 102
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=24.99 E-value=2.2e+02 Score=29.46 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=20.2
Q ss_pred hhhhHHHhhhHhHHHHHhhHHHHHH
Q 006150 197 RLGFLIDFLSHAAIVGFMGGAAVTI 221 (659)
Q Consensus 197 rlg~l~~~lp~~vi~Gf~~g~gl~i 221 (659)
-...+++.+|+.++.|+..+.|++=
T Consensus 166 ~v~~~~~~iP~~v~~GL~vaggmLP 190 (267)
T PRK09757 166 AMQALVKAMPAWLTHGFEVAGGILP 190 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3567899999999999888777653
No 103
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=24.87 E-value=95 Score=30.40 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred hhccHHHHHHHHHHHHhhhc-CHHHHHHHhccCccceehhhhhhhHHHHhhhhHHHHH
Q 006150 435 KYTPNAILASIIINAVISLI-DIGAATLLWKIDKFDFVACMGAFFGVVFSSVEIGLLI 491 (659)
Q Consensus 435 ~~iP~~vLa~ili~~~~~li-~~~~~~~l~k~~~~d~~v~~~t~~~~~~~~v~~Gl~~ 491 (659)
..+...+|-.+++.+|+++= +.+.++++++.++.-..+.+.+.++++..+...+.+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999995 6678889999999888888877777666555544444
No 104
>PRK10949 protease 4; Provisional
Probab=24.61 E-value=8.2e+02 Score=28.65 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=34.6
Q ss_pred hcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEE
Q 006150 572 TYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILA 615 (659)
Q Consensus 572 ~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la 615 (659)
.+.++++.|+||+.....-+.+.++.+.+..+++++.|..++-.
T Consensus 108 a~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~ 151 (618)
T PRK10949 108 KDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV 151 (618)
T ss_pred hcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 34578999999999887767777788888888888888776543
No 105
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.60 E-value=1.8e+02 Score=26.40 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHH-----hc-CCEEEEEcCC---hhHHHHH---HHcCCccc--cCCcccccCHHHHHHHh
Q 006150 593 SGIHALEGLHRSLE-----KR-EVQLILANPG---PVVMDKL---HASSFTSL--IGEDNIFLTVADAVSSC 650 (659)
Q Consensus 593 Sgi~~L~~l~~~l~-----~~-gi~l~la~~~---~~v~~~L---~~sg~~~~--~~~~~if~sv~~Av~~~ 650 (659)
-|+++|.|+...+. .+ .+.++|.|.+ +...+.+ ...|+.+. ...-.+.+|.+||++++
T Consensus 62 GG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 62 GGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp -SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 47888999888775 23 3499999976 4555554 45677754 22335778999999863
No 106
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=1e+03 Score=26.62 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhhccCCC-----cchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh--hhHhHHHHH
Q 006150 151 VAVVSLLLGTMLQNELDPI-----NEKAQYQRLAFTATFFAGITQVTLGFFRLGFLIDF--LSHAAIVGF 213 (659)
Q Consensus 151 ~a~~sl~~~~~i~~~~~~~-----~~~~~~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~--lp~~vi~Gf 213 (659)
.+.+++|++..+.....|. ++|+..|.+ ....+++=++++++++.-++..++. +|++++.-.
T Consensus 327 s~t~AvMlgal~i~Gl~PGP~LF~~~p~lvwgl-ias~~i~Ni~llilnlp~i~l~akll~iP~~~L~p~ 395 (504)
T COG3333 327 SATTAVMLGALIIYGLQPGPLLFTEQPDLVWGL-IASMIIGNIMLLILNLPLIGLFAKLLRIPYSVLYPI 395 (504)
T ss_pred cHHHHHHHHHHHHcCCCCCcHHHhhCcchhHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHhCcHHHHHHH
Confidence 4567888888887766664 445555644 4455677788899998888887764 688887653
No 107
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.24 E-value=1.6e+02 Score=26.81 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=37.3
Q ss_pred CccchhHHHHHHHHHHHHHhcCC---EEEEEcCC-------hhHHHHHHHcCCccccCCcccccCHHHHHHHh
Q 006150 588 TDIDTSGIHALEGLHRSLEKREV---QLILANPG-------PVVMDKLHASSFTSLIGEDNIFLTVADAVSSC 650 (659)
Q Consensus 588 ~~IDsSgi~~L~~l~~~l~~~gi---~l~la~~~-------~~v~~~L~~sg~~~~~~~~~if~sv~~Av~~~ 650 (659)
+.+-++....+.++.+.++++|. .+.+=+.- ++.++.|+..|+...|++.. +.++.++.+
T Consensus 57 S~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt---~~~~i~~~l 126 (128)
T cd02072 57 SSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT---PPEEAIADL 126 (128)
T ss_pred eccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHH
Confidence 44555666777778888877753 44443321 33567899999977665433 566666543
No 108
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=24.07 E-value=1.5e+02 Score=28.61 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=32.4
Q ss_pred EEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhH
Q 006150 536 VLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSG 594 (659)
Q Consensus 536 v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSg 594 (659)
+.+++++|.++....+++++.+.+..++ +.+.|++++..-...-.++
T Consensus 1 v~vi~i~g~I~~~~~~~l~~~l~~a~~~------------~~~~ivl~inspGG~v~~~ 47 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKEE------------GADAVVLDIDTPGGRVDSA 47 (178)
T ss_pred CEEEEEeeEECHHHHHHHHHHHHHHHhC------------CCCeEEEEEECcCCCHHHH
Confidence 4688999999988888888777554322 2678888886655543333
No 109
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=23.64 E-value=3.9e+02 Score=27.54 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.1
Q ss_pred hhhhHHHhhhHhHHHHHhhHHHHH
Q 006150 197 RLGFLIDFLSHAAIVGFMGGAAVT 220 (659)
Q Consensus 197 rlg~l~~~lp~~vi~Gf~~g~gl~ 220 (659)
-...+++.+|+.+..|+..+.|++
T Consensus 166 ~v~~~~~~iP~~v~~GL~vaggmL 189 (262)
T PRK15065 166 AVQSMLNAIPEVLTGGLNIGGGMI 189 (262)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhhH
Confidence 357789999999999988887765
No 110
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=23.24 E-value=3e+02 Score=28.09 Aligned_cols=75 Identities=8% Similarity=0.007 Sum_probs=45.7
Q ss_pred echHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEE-EEcCChhHHHHHH
Q 006150 548 SNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLI-LANPGPVVMDKLH 626 (659)
Q Consensus 548 ~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~-la~~~~~v~~~L~ 626 (659)
.+.+.+.+.+.+.+.+. ++-=.-..||||++.+..-.. . .-|..+.+.++++|...+ +.+.+++.++.-.
T Consensus 28 ~d~~~l~~~L~~ki~~a-------P~FF~~~PvVlDl~~l~~~~~-~-~dl~~L~~~Lr~~gl~~vGV~g~~~~~~~~a~ 98 (248)
T PRK04596 28 LDVPRLVQEMRERVTRA-------PKLFGRAAVILDFGGLSQVPD-L-ATAKALLDGLRSAGVLPVALAYGTSEIDLLSQ 98 (248)
T ss_pred CCHHHHHHHHHHHHHhC-------hHhhCCCcEEEEchhhcCccc-c-ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 45566777776655442 111123579999999863110 1 126668888889997665 4566666666666
Q ss_pred HcCCc
Q 006150 627 ASSFT 631 (659)
Q Consensus 627 ~sg~~ 631 (659)
..|+-
T Consensus 99 ~~gL~ 103 (248)
T PRK04596 99 QLGLP 103 (248)
T ss_pred HCCCC
Confidence 66654
No 111
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.16 E-value=2.5e+02 Score=26.89 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=39.1
Q ss_pred ceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHH
Q 006150 577 IQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVM 622 (659)
Q Consensus 577 ~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~ 622 (659)
++.+++| .....+|....+.+.+..++++++|..++++.-+.+..
T Consensus 108 p~llLlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 108 GTLFILD-EPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred CCEEEEe-CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 6788888 78999999999999999999988899999988776543
No 112
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.10 E-value=2.9e+02 Score=23.02 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=37.2
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcC--ChhHHHHHHHcCCcccc
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANP--GPVVMDKLHASSFTSLI 634 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~sg~~~~~ 634 (659)
.+..+++|.. .-|.+|++.+.++.+.. .+..+++... .+.......++|..+.+
T Consensus 43 ~~d~iiid~~---~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 43 PPDLIIIDLE---LPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp TESEEEEESS---SSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred CceEEEEEee---ecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 3678999954 34468888888886666 5666666553 34466666678887765
No 113
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.85 E-value=1.7e+02 Score=25.11 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=9.6
Q ss_pred cccccchhhHHHHHHHHHHHH
Q 006150 285 FWVPAIAPLISVILSTFFVYI 305 (659)
Q Consensus 285 ~~ip~~~~Li~vi~~t~~~~~ 305 (659)
.|+| ++++++|.++..+
T Consensus 34 K~iP----lIs~viGilLG~~ 50 (93)
T PF06946_consen 34 KWIP----LISVVIGILLGAA 50 (93)
T ss_pred chhh----HHHHHHHHHHHHH
Confidence 3677 5555555555444
No 114
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=22.79 E-value=1.5e+02 Score=26.37 Aligned_cols=54 Identities=7% Similarity=0.138 Sum_probs=35.3
Q ss_pred eEEEEEecCCCc-----cch----hHHHHHHHHHHHHHhcCCEEEEEcCCh----------hHHHHHHHcCCc
Q 006150 578 QFLIVEMSPVTD-----IDT----SGIHALEGLHRSLEKREVQLILANPGP----------VVMDKLHASSFT 631 (659)
Q Consensus 578 ~~VILD~s~V~~-----IDs----Sgi~~L~~l~~~l~~~gi~l~la~~~~----------~v~~~L~~sg~~ 631 (659)
|.+++|+.++-. .+. .-..-..++.+.++++|+++.++.-++ .+.+.+++.++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 356777766443 111 222345667888899999999886543 477788887764
No 115
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=1.7e+02 Score=32.34 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred CCcEEEEEeCCceeeechHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEE
Q 006150 533 VPGVLIVRVDSAIYFSNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQL 612 (659)
Q Consensus 533 ~~~v~Ilrl~g~L~F~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l 612 (659)
.+.+.+++++|.++=++.+++++.+.+..+ ++...+|+++.-=...+.+. .++.+...+..+.+
T Consensus 25 ~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~------------~~a~~vvl~ldTPGGl~~sm----~~iv~~i~~s~vPV 88 (436)
T COG1030 25 EKKVYVIEIDGAIDPASADYLQRALQSAEE------------ENAAAVVLELDTPGGLLDSM----RQIVRAILNSPVPV 88 (436)
T ss_pred CCeEEEEEecCccCHHHHHHHHHHHHHHHh------------CCCcEEEEEecCCCchHHHH----HHHHHHHHcCCCCE
Confidence 467899999999999999999999865432 33578999988766666555 45556666677774
Q ss_pred E
Q 006150 613 I 613 (659)
Q Consensus 613 ~ 613 (659)
.
T Consensus 89 ~ 89 (436)
T COG1030 89 I 89 (436)
T ss_pred E
Confidence 3
No 116
>PRK01973 septum formation inhibitor; Reviewed
Probab=21.63 E-value=3.6e+02 Score=27.96 Aligned_cols=74 Identities=8% Similarity=0.140 Sum_probs=45.1
Q ss_pred echHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHH
Q 006150 548 SNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHA 627 (659)
Q Consensus 548 ~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~ 627 (659)
.+.+.+++.+.+.+.+. ++-=+-..||||++.+..-+. .-|..+.+.++++|...+=+..+++..+.-..
T Consensus 26 ~d~~~l~~~L~~ki~~a-------P~FF~~aPvVlDl~~l~~~~~---~dl~~L~~~lr~~gl~~VGV~g~~~~~~~a~~ 95 (271)
T PRK01973 26 ADLDALRAELVKRFEAT-------PEFFADDVVAIDVRRLADDER---VPLDDIRQMLNDVRMRPIGVVAQPAQQGWAGE 95 (271)
T ss_pred CCHHHHHHHHHHHHHhC-------hHhhcCCCEEEEchHhCCCcc---cCHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 34566677766555432 111123469999999975331 12677888888889777655556565555555
Q ss_pred cCCc
Q 006150 628 SSFT 631 (659)
Q Consensus 628 sg~~ 631 (659)
.|+-
T Consensus 96 ~gL~ 99 (271)
T PRK01973 96 AGLP 99 (271)
T ss_pred cCCC
Confidence 6653
No 117
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.56 E-value=2.6e+02 Score=27.45 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=39.7
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHH
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMD 623 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~ 623 (659)
+++.+++| .....+|....+.+.++.++++++|..++++.-+.+..+
T Consensus 167 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 167 DYPILLLD-EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRE 213 (224)
T ss_pred CCCEEEEc-CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 35789998 789999999999999999999888999988877765443
No 118
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=21.47 E-value=3.6e+02 Score=26.97 Aligned_cols=52 Identities=13% Similarity=0.426 Sum_probs=44.2
Q ss_pred CCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHHHHHHHcC
Q 006150 575 PRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASS 629 (659)
Q Consensus 575 ~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~sg 629 (659)
.+++++.|| .+...+|--++.-++++.+.++++|+-+.++.- +|+|.|....
T Consensus 156 ~~P~fiLLD-EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDH--NVREtL~i~d 207 (243)
T COG1137 156 ANPKFILLD-EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDH--NVRETLDICD 207 (243)
T ss_pred cCCCEEEec-CCccCCCchhHHHHHHHHHHHHhCCceEEEccc--cHHHHHhhhh
Confidence 357899999 678889999999999999999999999999854 4788877654
No 119
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.15 E-value=2.9e+02 Score=26.77 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=39.0
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHH
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVM 622 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~ 622 (659)
+++.+++| ...+.+|....+.+.++.++++++|..++++.-..+..
T Consensus 146 ~p~~lllD-EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~ 191 (210)
T cd03269 146 DPELLILD-EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191 (210)
T ss_pred CCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 45789999 77899999999999999999988888888887766543
No 120
>PRK04516 minC septum formation inhibitor; Reviewed
Probab=21.06 E-value=4.2e+02 Score=26.83 Aligned_cols=73 Identities=7% Similarity=0.069 Sum_probs=45.1
Q ss_pred echHHHHHHHHHHHHhHHHHHHhhhcCCCceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEE-EEcCChhHHHHHH
Q 006150 548 SNSNYVKERILRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLI-LANPGPVVMDKLH 626 (659)
Q Consensus 548 ~na~~~~~~i~~~~~~~~~~~~~~~~~~~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~-la~~~~~v~~~L~ 626 (659)
.+.+.+++.+.+.+.+. ++ =+...||||++.+..-+. .-|..+.+.++++|...+ +.+.+++..+...
T Consensus 25 ~d~~~l~~~L~~ki~qa-------P~-f~~aPvVldl~~l~~~~~---~dl~~L~~~l~~~gl~~vGv~g~~~~~~~~a~ 93 (235)
T PRK04516 25 SDLFDLEDVLVKLGKKF-------QE-SGVVPFVLDVQEFDYPES---LDLAALVSLFSRHGMQILGLKHSNERWAAVAM 93 (235)
T ss_pred CCHHHHHHHHHHHHHhC-------cC-CCCCcEEEEchhhCCccc---ccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHh
Confidence 44566777776555432 12 223479999999864331 236778888899997765 4455666555555
Q ss_pred HcCCc
Q 006150 627 ASSFT 631 (659)
Q Consensus 627 ~sg~~ 631 (659)
..|+.
T Consensus 94 ~~gL~ 98 (235)
T PRK04516 94 KYHLL 98 (235)
T ss_pred hCCCc
Confidence 55654
No 121
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=20.90 E-value=9.4e+02 Score=24.90 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=82.5
Q ss_pred ccCCh--hhhhhhHHHHHHHHHHHHHHHHHHHHHh---CCCchhhh---hhccccchhhcccCCccccccchhHHHHHHH
Q 006150 87 RKYNL--KKLRGDLIAGLTIASLCIPQDIGYAKLA---NLDPQYGL---YSSFVPPLIYAFMGSSRDIAIGPVAVVSLLL 158 (659)
Q Consensus 87 ~~y~~--~~l~~Di~aGltv~~~~iPq~iaya~la---glpp~~GL---yss~v~~liyal~Gss~~~~~Gp~a~~sl~~ 158 (659)
|.++. +.+.--+++|+.=++=++=|-.||..+- ..|-..|+ -+++++.+++.=+.+.++..+|-.|+.-+++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 44443 7788889999998888888888876442 24444442 3677777777777788889999999988888
Q ss_pred HHHhhhccCCCcch----HH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhHhHHHHHhhHHHH
Q 006150 159 GTMLQNELDPINEK----AQ---YQRLAFTATFFAGITQVTLGFFRLGFLIDFLSHAAIVGFMGGAAV 219 (659)
Q Consensus 159 ~~~i~~~~~~~~~~----~~---~~~~a~~~t~l~Gv~~~~lg~~rlg~l~~~lp~~vi~Gf~~g~gl 219 (659)
+..+....+..++. .. .+..+...++.-.++..+--.++..-..-++|+++ |...|.-+
T Consensus 116 Gv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqai--Gm~i~a~i 181 (269)
T PF06800_consen 116 GVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAI--GMLIGAFI 181 (269)
T ss_pred HHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHH--HHHHHHHH
Confidence 88887654333221 11 12223333444444444455556666777887754 55554333
No 122
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=2e+02 Score=29.20 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcC-CEEEEEcCChh--HHHHHHHcCCccccCCcccccCHHHHHHHhh
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKRE-VQLILANPGPV--VMDKLHASSFTSLIGEDNIFLTVADAVSSCA 651 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~g-i~l~la~~~~~--v~~~L~~sg~~~~~~~~~if~sv~~Av~~~~ 651 (659)
+++.|..+-+.=.+|-+.+ +.++.-| -+++|++|+.. -...-..+|=.|.+....+|+|++||+..|.
T Consensus 4 ~i~iVLVep~~~gNIG~vA--------RaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~ 74 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVA--------RAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCD 74 (242)
T ss_pred ccEEEEEcCCCCccHHHHH--------HHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcCCC
Confidence 3556666666666665544 4555556 46999999874 3333334566677878899999999998775
No 123
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=20.62 E-value=1.1e+02 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=26.1
Q ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCC
Q 006150 578 QFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPG 618 (659)
Q Consensus 578 ~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~ 618 (659)
..+||| ....++ + -+.+..+.+.+++.++++++++..
T Consensus 89 ~~lviD--e~~~l~-~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVID--EADHLF-S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEE--TTHHHH-T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEe--ChHhcC-C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 678898 666672 1 455555555555889999999876
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.38 E-value=3.2e+02 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=38.9
Q ss_pred CceEEEEEecCCCccchhHHHHHHHHHHHHHhcCCEEEEEcCChhHH
Q 006150 576 RIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVM 622 (659)
Q Consensus 576 ~~~~VILD~s~V~~IDsSgi~~L~~l~~~l~~~gi~l~la~~~~~v~ 622 (659)
+++.+++| .+...+|....+.+.++.++++++|..++++.-..+..
T Consensus 144 ~p~llllD-EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~ 189 (205)
T cd03226 144 GKDLLIFD-EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189 (205)
T ss_pred CCCEEEEe-CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35789999 68999999999999999999987888888887765543
Done!