BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006152
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFI 433
+ ++ L + RP +VS+ NA+R++ + KI S + + + + + FI
Sbjct: 63 EFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFI 121
Query: 434 NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHE 493
+ +R I + +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 122 HNSEKALER-IGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQ 180
Query: 494 XXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553
Y +A + + +V +GA S+ NG V +++GTA +A+ A
Sbjct: 181 GKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAK 240
Query: 554 GFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLN 613
+ ++ E YKFH L + E+ DP + +P E L W K N+++ N
Sbjct: 241 EHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWN 292
Query: 614 LIYDATPSDYVSLIITDYGMV 634
+D TP +YV +IIT+ G++
Sbjct: 293 PAFDVTPPEYVDVIITERGII 313
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFI 433
+ ++ L + RP +VS+ NA+R++ + KI S + + + + + FI
Sbjct: 63 EFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFI 121
Query: 434 NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHE 493
+ +R I + +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 122 HNSEKALER-IGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQ 180
Query: 494 XXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553
Y +A + + +V +GA S+ NG V +++GTA +A+ A
Sbjct: 181 GKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAK 240
Query: 554 GFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLN 613
+ ++ E YKFH L + E+ DP + +P E L W K N+++ N
Sbjct: 241 EHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWN 292
Query: 614 LIYDATPSDYVSLIITDYGMV 634
+D TP +YV +IIT+ G++
Sbjct: 293 PAFDVTPPEYVDVIITERGII 313
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 13/251 (5%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 57 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 114
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 115 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 174
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 175 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 234
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L + E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 235 ETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 286
Query: 624 VSLIITDYGMV 634
V +IIT+ G++
Sbjct: 287 VDVIITERGII 297
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 13/262 (4%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFI 433
+ ++ L + RP +VS+ NA+R++ + KI S + + + + + FI
Sbjct: 47 EFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFI 105
Query: 434 NEKIILADRVIVKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKH 492
+ +R I + +I DGDV++T+ S A +++ A E GK +V++ ++RPK
Sbjct: 106 HNSEKALER-IGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKW 164
Query: 493 EXXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552
+ Y +A + + +V +GA S+ NG V +++GTA +A+ A
Sbjct: 165 QGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTA 224
Query: 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLL 612
+ ++ E YKFH L + E+ DP + +P E L W K N+++
Sbjct: 225 KEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVW 276
Query: 613 NLIYDATPSDYVSLIITDYGMV 634
N +D TP +YV +IIT+ G++
Sbjct: 277 NPAFDVTPPEYVDVIITERGII 298
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 13/251 (5%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 56 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 113
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 114 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 173
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 174 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 233
Query: 564 EAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623
E YKFH L + E+ DP + +P E L W K N+++ N +D TP +Y
Sbjct: 234 ETYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEY 285
Query: 624 VSLIITDYGMV 634
V +IIT+ G++
Sbjct: 286 VDVIITERGII 296
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 128/262 (48%), Gaps = 16/262 (6%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFI 433
+ ++ L + RP +VS+ NA+R++ + KI S + + + + + FI
Sbjct: 53 EFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFI 111
Query: 434 NEKIILADRVIVKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKH 492
+ +R I + +I DGDV++T+ S A +++ A E GK +V++ ++RPK
Sbjct: 112 HNSEKALER-IGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKW 170
Query: 493 EXXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552
+ Y +A + + +V +GA S+ NG V +++GTA +A+ A
Sbjct: 171 QGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTA 230
Query: 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLL 612
+ ++ E YKFH L I E+ DP + +P E L W K N+++
Sbjct: 231 KEHRVWTMIAAETYKFHPETMLVEI---EMRDPTEV--IPEDE----LKTWPK--NIEVW 279
Query: 613 NLIYDATPSDYVSLIITDYGMV 634
N +D TP +YV +IIT+ G++
Sbjct: 280 NPAFDVTPPEYVDVIITERGII 301
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 20/183 (10%)
Query: 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYT 511
I DGDV++T+ SS V I++ A E K+F+V++ +S P +E
Sbjct: 107 IDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVI 166
Query: 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
+ E + +GA + +G V ++ GT +A+ + IP V E YKFH
Sbjct: 167 TDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPT 226
Query: 572 VQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDY 631
++ + L + D I N+++ N+++D TP YV IIT+
Sbjct: 227 LKSGDVM---LMERDLIRG-----------------NVRIRNVLFDVTPWKYVRGIITEL 266
Query: 632 GMV 634
G+V
Sbjct: 267 GIV 269
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 37/276 (13%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIR-----FLKSQIAKIPISLSESEAKATLHSDIE 430
+L + FL RP +V++ I LK + + L+ EA+ D+E
Sbjct: 72 ELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEEDVE 131
Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTY---GSSSAVEM-----ILQHAHELGKQFR 482
R +R + ++ + DGDV+LTY G + V+ +++ A E GK+ R
Sbjct: 132 R---------NRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIR 182
Query: 483 VVIVDSRPKHEXXXXXXXXXXXXXSCTYTHINAISYIIHE---VTRVFLGASSVLSNGTV 539
V+ ++RP ++ +++ I+ + V +V +GA ++ + V
Sbjct: 183 VIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-V 241
Query: 540 CSRVGTACVAMVAYGFHIPVLVCCEAYKF-HERVQLDSICSNELGDPDSISKVPGREDIN 598
+++GT V++VA +IP V F ER D + P G+ I
Sbjct: 242 FNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVVIEER---PREELIFCGKRQIA 298
Query: 599 HLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMV 634
L N+++ N +D TP + V+ +IT+YG++
Sbjct: 299 PL-------NVKVYNPAFDPTPLENVTALITEYGVI 327
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCT 509
T I+DG +LT+ S V +L+ A K+F V + +S+P T
Sbjct: 117 TFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVT 176
Query: 510 YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569
A+ YI + V +GA V+ NG + +++GT A+ A + P V E++KF
Sbjct: 177 VVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKF- 235
Query: 570 ERVQLDSICSNELGD-----PDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYV 624
V+L + ++ D D++ +D+ W D T +
Sbjct: 236 --VRLFPLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPW------------VDYTAPSLI 281
Query: 625 SLIITDYGMVSHTLVS 640
+L+ TD G+++ + VS
Sbjct: 282 TLLFTDLGVLTPSAVS 297
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 128/304 (42%), Gaps = 37/304 (12%)
Query: 349 ARCIAMLQAFQEAI--RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406
A I + AF A+ +D T R ++ +L RP ++++ A+ L
Sbjct: 74 APAIGITAAFGLALAAKDIETDNVTEFRR----RLEDIKQYLNSSRPTAINLSWALERLS 129
Query: 407 SQIAKIPISLSESEAKATL-HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT----- 460
+ ++S +EAK L H I+ + ++ R+I ++A+ + GD ++T
Sbjct: 130 HSVEN---AISVNEAKTNLVHEAIQIQVEDEETC--RLIGQNALQLFKKGDRIMTICNAG 184
Query: 461 ------YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXX-XSCTYTHI 513
YG++ A L +LG + ++RP + T
Sbjct: 185 SIATSRYGTALA-PFYLAKQKDLG--LHIYACETRPVLQGSRLTAWELMQGGIDVTLITD 241
Query: 514 NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
+ ++ + E ++ V +GA + NG +++GT +A++A F IP V F +
Sbjct: 242 SMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTK 301
Query: 572 VQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDY 631
V+ + E DP+ + ++ G N+ + N +D TP D +S IIT+
Sbjct: 302 VKCGADIPIEERDPEEVRQISGVR--------TAPSNVPVFNPAFDITPHDLISGIITEK 353
Query: 632 GMVS 635
G+++
Sbjct: 354 GIMT 357
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 122/305 (40%), Gaps = 40/305 (13%)
Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIR-- 403
G A +A + +RDY T LT L RP +V++ A+
Sbjct: 51 GAPAIGVAAAFGYVLGLRDYKTG-------SLTDWXKQVKETLARTRPTAVNLFWALNRX 103
Query: 404 ---FLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT 460
F ++ + + E+EA + DIE ++ I K+ I+DG +LT
Sbjct: 104 EKVFFENADRENLFEILENEALKXAYEDIE---------VNKAIGKNGAQLIKDGSTILT 154
Query: 461 YGSSSAVEMI--------LQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYTH 512
+ ++ A+ + ++ A E GK+ RV ++RP + Y
Sbjct: 155 HCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVYVI 214
Query: 513 I-NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569
N ++ + V +GA + NG +++GT +A++A +IP V
Sbjct: 215 TDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTID 274
Query: 570 ERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIIT 629
++ E P+ ++ G N + E +++LN +D T + ++ IIT
Sbjct: 275 PTIRSGEEIPIEERRPEEVTHCGG----NRI----APEGVKVLNPAFDVTENTLITAIIT 326
Query: 630 DYGMV 634
+ G++
Sbjct: 327 EKGVI 331
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 27/280 (9%)
Query: 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-PISLSESEAKATLHSDIERFI 433
R++ + + F+ RP +V++ N +R LK+Q+ K+ P + A+A + +
Sbjct: 91 REVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYT 150
Query: 434 NEKIILADRVIVKHAVTKI--------RDGDVLLTYGSSSAVEM--------ILQHAHEL 477
N+ + + I +H I RD +LT ++ A+ +++
Sbjct: 151 ND--VAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD 208
Query: 478 GKQFRVVIVDSRPKHEXXXXXXXX-XXXXXSCTYTHINAISYII--HEVTRVFLGASSVL 534
GK RV ++RP ++ CT A S + ++ V +GA +
Sbjct: 209 GKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADRIC 268
Query: 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGR 594
NG +++GT +A+ A + + V + + E +P I+
Sbjct: 269 QNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVT 328
Query: 595 EDINHLDGWDKSENLQLLNLIYDATPSDYVS-LIITDYGM 633
+ DG +L + N ++D TPS+ ++ IIT+ G+
Sbjct: 329 KQRVVADG----PHLSIWNPVFDITPSELITGGIITEKGV 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,742,319
Number of Sequences: 62578
Number of extensions: 553765
Number of successful extensions: 1023
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 13
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)