Query 006152
Match_columns 658
No_of_seqs 274 out of 1448
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 19:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 9E-108 2E-112 873.4 32.7 528 48-642 15-547 (556)
2 TIGR00512 salvage_mtnA S-methy 100.0 3.4E-70 7.3E-75 577.5 29.4 303 298-636 8-331 (331)
3 PRK05720 mtnA methylthioribose 100.0 1.5E-69 3.2E-74 575.8 29.3 309 297-640 10-335 (344)
4 PRK08535 translation initiatio 100.0 7.1E-69 1.5E-73 564.9 31.8 305 327-651 2-306 (310)
5 COG0182 Predicted translation 100.0 4.5E-69 9.7E-74 556.4 24.8 307 299-639 13-337 (346)
6 PRK06036 translation initiatio 100.0 5E-68 1.1E-72 562.5 29.0 308 298-641 11-335 (339)
7 PRK05772 translation initiatio 100.0 1.4E-67 3.1E-72 562.2 30.8 310 297-638 23-353 (363)
8 TIGR00511 ribulose_e2b2 ribose 100.0 9.3E-67 2E-71 546.9 31.8 289 342-650 12-300 (301)
9 PRK08334 translation initiatio 100.0 2.4E-66 5.1E-71 550.7 30.1 309 297-639 21-346 (356)
10 PRK06371 translation initiatio 100.0 2.1E-66 4.6E-71 547.1 27.4 289 297-639 19-324 (329)
11 TIGR00524 eIF-2B_rel eIF-2B al 100.0 6.4E-66 1.4E-70 540.8 30.1 292 315-636 1-303 (303)
12 COG1184 GCD2 Translation initi 100.0 1E-64 2.2E-69 526.1 30.9 299 328-648 2-300 (301)
13 PF01008 IF-2B: Initiation fac 100.0 3.7E-65 7.9E-70 526.8 26.1 281 343-636 1-282 (282)
14 PRK08335 translation initiatio 100.0 4E-62 8.7E-67 504.7 31.2 232 375-638 42-273 (275)
15 KOG1468 Predicted translation 100.0 1.5E-60 3.3E-65 482.2 20.3 312 297-639 10-345 (354)
16 KOG1466 Translation initiation 100.0 5E-53 1.1E-57 425.2 24.3 283 349-649 28-313 (313)
17 KOG1465 Translation initiation 100.0 4.9E-52 1.1E-56 425.1 28.2 306 331-652 10-349 (353)
18 PRK06372 translation initiatio 100.0 5.2E-50 1.1E-54 409.9 23.5 247 340-641 7-253 (253)
19 PRK00702 ribose-5-phosphate is 97.5 0.0013 2.8E-08 67.5 13.1 120 440-572 6-128 (220)
20 TIGR00021 rpiA ribose 5-phosph 97.4 0.0024 5.1E-08 65.5 12.5 126 442-582 3-133 (218)
21 PRK13509 transcriptional repre 97.2 0.0026 5.5E-08 66.1 11.5 121 440-571 79-213 (251)
22 PRK10434 srlR DNA-bindng trans 97.2 0.0044 9.4E-08 64.6 13.2 123 440-571 77-214 (256)
23 PF00455 DeoRC: DeoR C termina 97.2 0.0087 1.9E-07 58.1 13.6 123 440-571 5-142 (161)
24 cd01398 RPI_A RPI_A: Ribose 5- 97.1 0.0037 7.9E-08 63.7 11.1 126 442-582 3-133 (213)
25 PRK09802 DNA-binding transcrip 97.1 0.0067 1.5E-07 63.7 12.8 121 441-570 93-228 (269)
26 PRK10906 DNA-binding transcrip 97.0 0.0091 2E-07 62.1 13.2 122 440-570 77-213 (252)
27 COG1349 GlpR Transcriptional r 96.6 0.06 1.3E-06 56.1 15.3 123 440-571 77-214 (253)
28 PRK10411 DNA-binding transcrip 96.5 0.085 1.8E-06 54.6 15.3 121 440-570 79-214 (240)
29 PRK10681 DNA-binding transcrip 96.1 0.081 1.7E-06 55.0 12.9 121 441-570 79-214 (252)
30 PLN02384 ribose-5-phosphate is 95.1 0.38 8.1E-06 50.9 13.2 117 443-572 38-159 (264)
31 PRK13978 ribose-5-phosphate is 94.0 0.92 2E-05 47.1 13.0 118 442-572 9-130 (228)
32 KOG0259 Tyrosine aminotransfer 90.7 1.4 3E-05 49.0 9.6 116 440-561 108-237 (447)
33 COG2057 AtoA Acyl CoA:acetate/ 89.2 0.95 2.1E-05 46.8 6.6 98 440-543 7-120 (225)
34 COG0120 RpiA Ribose 5-phosphat 88.8 6.1 0.00013 41.1 12.1 119 442-572 8-128 (227)
35 PF02254 TrkA_N: TrkA-N domain 85.9 3 6.6E-05 37.1 7.2 92 458-566 1-99 (116)
36 COG0426 FpaA Uncharacterized f 82.7 22 0.00047 40.0 13.4 141 424-569 183-342 (388)
37 PRK04311 selenocysteine syntha 80.8 29 0.00064 39.6 14.0 114 446-563 134-257 (464)
38 TIGR01437 selA_rel uncharacter 80.6 18 0.00038 39.5 11.8 137 418-561 26-184 (363)
39 PF01073 3Beta_HSD: 3-beta hyd 80.5 3.8 8.3E-05 43.2 6.5 107 459-568 2-119 (280)
40 cd00293 USP_Like Usp: Universa 80.3 26 0.00057 30.2 10.8 93 466-562 15-130 (130)
41 TIGR00474 selA seryl-tRNA(sec) 80.1 73 0.0016 36.4 16.8 113 447-563 130-252 (454)
42 TIGR00273 iron-sulfur cluster- 78.3 32 0.00069 39.1 13.1 50 522-572 181-231 (432)
43 KOG3075 Ribose 5-phosphate iso 77.3 15 0.00032 39.0 9.4 118 443-571 30-151 (261)
44 cd01989 STK_N The N-terminal d 72.7 41 0.00088 30.9 10.3 60 501-563 74-144 (146)
45 PRK05973 replicative DNA helic 71.5 91 0.002 32.7 13.5 113 452-568 61-195 (237)
46 cd01424 MGS_CPS_II Methylglyox 70.7 53 0.0011 29.5 10.3 95 455-565 1-104 (110)
47 PF03853 YjeF_N: YjeF-related 70.6 62 0.0014 31.6 11.6 121 437-561 5-136 (169)
48 PRK08134 O-acetylhomoserine am 70.3 48 0.001 37.4 12.0 99 456-562 81-185 (433)
49 PRK11557 putative DNA-binding 70.3 69 0.0015 33.3 12.5 40 491-530 188-227 (278)
50 PRK07582 cystathionine gamma-l 70.3 43 0.00093 36.6 11.4 96 454-561 65-167 (366)
51 PLN02651 cysteine desulfurase 70.2 67 0.0015 34.6 12.8 102 454-561 60-173 (364)
52 PRK10886 DnaA initiator-associ 70.1 1.2E+02 0.0026 30.7 13.8 38 520-564 107-144 (196)
53 cd00532 MGS-like MGS-like doma 70.0 49 0.0011 30.1 10.0 85 469-568 16-111 (112)
54 PRK05414 urocanate hydratase; 69.6 23 0.00049 41.0 9.2 88 373-464 215-326 (556)
55 TIGR01140 L_thr_O3P_dcar L-thr 69.0 35 0.00076 36.3 10.2 101 452-561 62-163 (330)
56 PRK01438 murD UDP-N-acetylmura 68.8 23 0.00049 39.9 9.1 72 454-530 15-86 (480)
57 PRK14106 murD UDP-N-acetylmura 67.6 34 0.00075 38.0 10.2 94 454-561 4-97 (450)
58 TIGR03235 DNA_S_dndA cysteine 67.4 91 0.002 33.2 13.0 103 454-561 59-173 (353)
59 TIGR01228 hutU urocanate hydra 66.7 26 0.00057 40.4 8.9 88 373-464 206-317 (545)
60 PRK09496 trkA potassium transp 66.7 66 0.0014 35.6 12.1 61 450-512 200-261 (453)
61 PRK08133 O-succinylhomoserine 66.3 82 0.0018 34.8 12.7 98 456-561 78-181 (390)
62 cd05005 SIS_PHI Hexulose-6-pho 66.2 73 0.0016 31.0 11.0 84 445-528 23-125 (179)
63 cd06454 KBL_like KBL_like; thi 66.1 66 0.0014 33.7 11.5 103 451-562 58-168 (349)
64 TIGR01470 cysG_Nterm siroheme 66.1 47 0.001 33.7 9.9 95 454-565 8-103 (205)
65 PRK07810 O-succinylhomoserine 65.9 91 0.002 34.7 13.0 98 456-561 87-190 (403)
66 TIGR03576 pyridox_MJ0158 pyrid 65.4 2E+02 0.0044 31.3 15.3 134 419-561 36-173 (346)
67 PRK05613 O-acetylhomoserine am 65.4 51 0.0011 37.3 11.0 100 456-562 86-191 (437)
68 TIGR03402 FeS_nifS cysteine de 65.1 1E+02 0.0022 33.2 12.9 102 454-561 59-171 (379)
69 PRK00025 lpxB lipid-A-disaccha 65.0 87 0.0019 33.5 12.3 71 478-565 218-289 (380)
70 TIGR02006 IscS cysteine desulf 64.9 1.1E+02 0.0023 33.6 13.2 102 454-561 64-177 (402)
71 TIGR03127 RuMP_HxlB 6-phospho 64.5 88 0.0019 30.3 11.2 38 493-530 87-124 (179)
72 PRK05839 hypothetical protein; 64.3 62 0.0014 35.1 11.1 105 452-561 81-193 (374)
73 cd06451 AGAT_like Alanine-glyo 63.4 1.1E+02 0.0023 32.5 12.6 100 455-562 50-160 (356)
74 PRK08248 O-acetylhomoserine am 63.0 68 0.0015 36.2 11.4 99 455-562 80-185 (431)
75 PF04016 DUF364: Domain of unk 62.6 29 0.00062 33.5 7.3 100 452-575 8-107 (147)
76 PRK02947 hypothetical protein; 62.6 2E+02 0.0043 30.0 14.9 36 493-528 121-167 (246)
77 cd00614 CGS_like CGS_like: Cys 62.1 71 0.0015 34.8 11.1 98 455-561 56-160 (369)
78 PF00535 Glycos_transf_2: Glyc 61.9 57 0.0012 29.2 8.8 81 457-537 3-94 (169)
79 cd03466 Nitrogenase_NifN_2 Nit 61.8 2.7E+02 0.0058 31.4 15.8 96 454-563 299-397 (429)
80 COG1737 RpiR Transcriptional r 61.8 2.2E+02 0.0048 30.2 14.5 39 492-530 191-229 (281)
81 PRK08574 cystathionine gamma-s 60.8 83 0.0018 34.8 11.4 98 455-561 69-172 (385)
82 cd01423 MGS_CPS_I_III Methylgl 60.4 43 0.00093 30.5 7.7 88 457-562 3-107 (116)
83 PRK12454 carbamate kinase-like 60.3 1E+02 0.0023 33.7 11.7 49 514-562 176-232 (313)
84 PTZ00433 tyrosine aminotransfe 60.3 76 0.0016 34.9 11.0 96 452-561 102-215 (412)
85 PRK15118 universal stress glob 60.3 79 0.0017 29.0 9.6 36 522-563 103-138 (144)
86 PRK11337 DNA-binding transcrip 60.2 1.4E+02 0.0031 31.3 12.6 47 483-529 192-238 (292)
87 PRK13520 L-tyrosine decarboxyl 59.0 1.6E+02 0.0035 31.2 13.0 102 454-562 76-187 (371)
88 TIGR01329 cysta_beta_ly_E cyst 58.8 1.1E+02 0.0024 33.7 11.9 99 456-563 64-168 (378)
89 PRK09932 glycerate kinase II; 58.8 12 0.00026 41.8 4.5 62 493-568 267-328 (381)
90 PRK07865 N-succinyldiaminopime 58.5 75 0.0016 34.1 10.4 95 452-561 84-186 (364)
91 TIGR01326 OAH_OAS_sulfhy OAH/O 58.5 1E+02 0.0023 34.3 11.8 98 456-562 74-178 (418)
92 cd01494 AAT_I Aspartate aminot 58.3 1.1E+02 0.0023 27.9 10.1 100 453-561 16-127 (170)
93 cd01987 USP_OKCHK USP domain i 57.6 1.4E+02 0.003 26.5 10.8 94 466-562 15-123 (124)
94 COG4635 HemG Flavodoxin [Energ 57.4 10 0.00022 37.8 3.2 66 496-563 20-86 (175)
95 TIGR01325 O_suc_HS_sulf O-succ 57.4 1.5E+02 0.0032 32.6 12.6 97 456-561 71-174 (380)
96 TIGR01979 sufS cysteine desulf 57.3 2.3E+02 0.0051 30.6 14.1 103 455-563 81-196 (403)
97 PLN02409 serine--glyoxylate am 57.1 1E+02 0.0023 33.9 11.4 98 456-561 61-174 (401)
98 PF00266 Aminotran_5: Aminotra 56.6 1.2E+02 0.0026 32.6 11.6 102 455-562 62-175 (371)
99 PRK05958 8-amino-7-oxononanoat 56.4 2.7E+02 0.0059 29.6 14.2 97 452-561 97-203 (385)
100 PF10087 DUF2325: Uncharacteri 56.3 56 0.0012 29.0 7.5 59 497-562 15-81 (97)
101 PF01488 Shikimate_DH: Shikima 56.2 56 0.0012 30.6 7.9 72 454-529 11-82 (135)
102 PRK10874 cysteine sulfinate de 56.1 1.9E+02 0.0042 31.4 13.2 102 455-562 82-196 (401)
103 COG0855 Ppk Polyphosphate kina 56.0 30 0.00065 41.1 7.1 50 462-512 382-433 (696)
104 PF01175 Urocanase: Urocanase; 55.9 53 0.0011 38.2 8.9 114 373-490 205-360 (546)
105 TIGR03392 FeS_syn_CsdA cystein 55.9 1.8E+02 0.0039 31.6 12.9 101 455-561 79-192 (398)
106 PRK09331 Sep-tRNA:Cys-tRNA syn 55.8 1.2E+02 0.0027 33.0 11.7 15 547-561 179-193 (387)
107 PRK05443 polyphosphate kinase; 55.7 34 0.00073 41.2 7.7 50 463-513 379-430 (691)
108 PRK07309 aromatic amino acid a 54.4 1.2E+02 0.0027 33.0 11.4 101 454-561 91-204 (391)
109 PF02142 MGS: MGS-like domain 54.3 19 0.00042 31.7 4.3 78 469-560 4-94 (95)
110 PRK01710 murD UDP-N-acetylmura 54.3 78 0.0017 35.7 10.0 93 455-561 14-106 (458)
111 TIGR02326 transamin_PhnW 2-ami 54.2 1.8E+02 0.0038 31.1 12.4 99 457-562 57-165 (363)
112 PRK14012 cysteine desulfurase; 54.2 3.2E+02 0.0069 29.9 14.5 102 455-561 67-179 (404)
113 CHL00144 odpB pyruvate dehydro 53.7 56 0.0012 35.6 8.5 68 498-570 220-299 (327)
114 PRK05968 hypothetical protein; 53.6 1.6E+02 0.0035 32.5 12.1 99 456-562 80-183 (389)
115 PRK06234 methionine gamma-lyas 53.4 1.4E+02 0.003 33.1 11.7 98 456-561 81-186 (400)
116 TIGR03539 DapC_actino succinyl 53.4 87 0.0019 33.7 9.9 94 452-561 78-180 (357)
117 cd04235 AAK_CK AAK_CK: Carbama 52.9 2E+02 0.0044 31.4 12.4 50 514-563 172-229 (308)
118 PRK05749 3-deoxy-D-manno-octul 52.8 94 0.002 34.1 10.2 97 454-564 49-155 (425)
119 cd06453 SufS_like Cysteine des 52.6 2.5E+02 0.0053 30.0 13.1 103 455-563 62-176 (373)
120 PRK07812 O-acetylhomoserine am 52.6 1.3E+02 0.0029 34.0 11.5 99 457-563 87-192 (436)
121 PRK13938 phosphoheptose isomer 52.5 2.4E+02 0.0052 28.6 12.2 36 493-528 128-163 (196)
122 PRK09028 cystathionine beta-ly 52.3 1.4E+02 0.003 33.5 11.4 94 456-561 78-181 (394)
123 TIGR00639 PurN phosphoribosylg 52.2 83 0.0018 31.7 8.8 75 457-534 4-92 (190)
124 TIGR00045 glycerate kinase. Th 52.1 17 0.00036 40.6 4.2 63 493-569 266-328 (375)
125 PRK13479 2-aminoethylphosphona 52.0 2.1E+02 0.0046 30.5 12.6 100 456-562 57-167 (368)
126 PRK07568 aspartate aminotransf 51.8 1.4E+02 0.0029 32.4 11.1 96 452-561 86-200 (397)
127 PRK05647 purN phosphoribosylgl 51.7 65 0.0014 32.7 8.1 76 457-535 5-94 (200)
128 PRK08056 threonine-phosphate d 51.3 1.4E+02 0.003 32.1 11.0 94 452-561 70-180 (356)
129 PRK08045 cystathionine gamma-s 51.1 1.3E+02 0.0028 33.4 10.9 98 456-561 69-172 (386)
130 PRK06702 O-acetylhomoserine am 51.1 1.5E+02 0.0033 33.7 11.6 95 456-561 78-182 (432)
131 PF05368 NmrA: NmrA-like famil 51.0 65 0.0014 32.2 7.9 98 458-564 1-102 (233)
132 PRK09295 bifunctional cysteine 50.5 2E+02 0.0043 31.4 12.3 101 455-561 86-199 (406)
133 PRK07683 aminotransferase A; V 50.3 1.2E+02 0.0027 32.9 10.6 93 456-561 91-199 (387)
134 cd01972 Nitrogenase_VnfE_like 50.1 4E+02 0.0086 29.9 14.7 95 454-562 292-399 (426)
135 TIGR01977 am_tr_V_EF2568 cyste 50.0 3.1E+02 0.0067 29.3 13.4 99 456-561 64-172 (376)
136 PLN02828 formyltetrahydrofolat 49.9 64 0.0014 34.5 8.0 73 456-529 73-154 (268)
137 cd06450 DOPA_deC_like DOPA dec 49.9 3.1E+02 0.0067 28.8 13.2 101 455-562 58-184 (345)
138 PLN02778 3,5-epimerase/4-reduc 49.8 75 0.0016 33.5 8.6 26 540-565 86-111 (298)
139 PLN02260 probable rhamnose bio 49.8 69 0.0015 37.7 9.1 89 479-568 379-485 (668)
140 PRK07503 methionine gamma-lyas 49.7 1.9E+02 0.0041 32.2 12.0 98 456-561 82-185 (403)
141 PLN03209 translocon at the inn 49.5 53 0.0012 38.8 7.9 111 453-566 78-209 (576)
142 PRK10342 glycerate kinase I; P 49.4 21 0.00046 39.9 4.5 63 493-569 267-329 (381)
143 TIGR02371 ala_DH_arch alanine 49.3 1.2E+02 0.0026 32.9 10.1 98 447-547 118-225 (325)
144 cd01974 Nitrogenase_MoFe_beta 49.2 4.3E+02 0.0094 29.7 16.9 94 454-563 302-402 (435)
145 PRK12414 putative aminotransfe 48.5 2.2E+02 0.0048 30.9 12.1 97 455-561 91-200 (384)
146 cd00609 AAT_like Aspartate ami 48.3 94 0.002 32.1 8.9 103 454-563 59-172 (350)
147 TIGR03590 PseG pseudaminic aci 48.0 2.1E+02 0.0046 30.1 11.5 91 456-564 172-268 (279)
148 cd06436 GlcNAc-1-P_transferase 47.9 70 0.0015 31.0 7.4 31 458-488 3-33 (191)
149 PLN02206 UDP-glucuronate decar 47.9 67 0.0015 36.3 8.3 109 454-566 118-235 (442)
150 TIGR03538 DapC_gpp succinyldia 47.9 1.5E+02 0.0033 32.3 10.7 97 452-560 87-202 (393)
151 PRK15482 transcriptional regul 47.7 2.6E+02 0.0056 29.3 12.2 39 491-529 195-233 (285)
152 PRK12475 thiamine/molybdopteri 47.6 1.8E+02 0.0038 31.9 11.2 110 443-563 13-148 (338)
153 TIGR01976 am_tr_V_VC1184 cyste 47.4 4E+02 0.0086 28.8 14.9 77 480-561 104-191 (397)
154 PLN02331 phosphoribosylglycina 47.3 94 0.002 31.9 8.5 74 457-534 3-91 (207)
155 PLN02656 tyrosine transaminase 47.2 2E+02 0.0043 31.7 11.7 97 452-561 94-207 (409)
156 PRK09411 carbamate kinase; Rev 47.1 57 0.0012 35.5 7.1 61 445-507 33-98 (297)
157 TIGR01324 cysta_beta_ly_B cyst 47.1 2.1E+02 0.0045 31.6 11.8 94 456-561 67-170 (377)
158 PRK08249 cystathionine gamma-s 46.9 1.4E+02 0.0031 33.1 10.5 98 456-561 81-184 (398)
159 COG1929 Glycerate kinase [Carb 46.8 24 0.00052 39.2 4.3 64 492-569 266-329 (378)
160 PF13090 PP_kinase_C: Polyphos 46.8 18 0.0004 39.9 3.4 50 462-513 48-100 (352)
161 TIGR03537 DapC succinyldiamino 46.3 1.9E+02 0.0041 30.9 11.1 99 452-561 57-174 (350)
162 PRK15116 sulfur acceptor prote 46.3 2.4E+02 0.0051 30.2 11.5 117 443-570 19-161 (268)
163 PRK05939 hypothetical protein; 46.3 2.3E+02 0.0049 31.6 11.9 94 456-561 64-166 (397)
164 TIGR01328 met_gam_lyase methio 46.0 2.4E+02 0.0052 31.2 12.0 98 456-561 76-179 (391)
165 COG1091 RfbD dTDP-4-dehydrorha 46.0 65 0.0014 34.7 7.3 96 458-572 3-108 (281)
166 PRK08861 cystathionine gamma-s 45.7 1.7E+02 0.0036 32.6 10.8 98 456-561 70-173 (388)
167 TIGR02080 O_succ_thio_ly O-suc 45.7 1.9E+02 0.0041 31.9 11.2 99 455-561 67-171 (382)
168 PRK05678 succinyl-CoA syntheta 45.6 1.3E+02 0.0029 32.4 9.7 103 456-560 67-173 (291)
169 TIGR03705 poly_P_kin polyphosp 45.2 55 0.0012 39.4 7.2 50 462-512 369-420 (672)
170 PF05159 Capsule_synth: Capsul 45.1 1.2E+02 0.0025 31.5 9.0 93 457-566 131-228 (269)
171 PRK05994 O-acetylhomoserine am 45.1 1.8E+02 0.0038 32.8 10.9 96 457-561 81-183 (427)
172 PRK07504 O-succinylhomoserine 45.0 2.5E+02 0.0054 31.2 12.0 96 458-561 84-185 (398)
173 PRK15005 universal stress prot 44.8 2.2E+02 0.0048 25.8 9.9 36 522-562 107-143 (144)
174 cd00287 ribokinase_pfkB_like r 44.4 66 0.0014 30.7 6.6 69 478-563 23-91 (196)
175 smart00851 MGS MGS-like domain 44.3 1.6E+02 0.0035 25.5 8.4 77 470-560 5-89 (90)
176 COG1104 NifS Cysteine sulfinat 44.3 1.1E+02 0.0025 34.4 9.1 101 453-561 60-176 (386)
177 PF00148 Oxidored_nitro: Nitro 44.2 4.6E+02 0.01 28.7 17.0 107 440-564 258-367 (398)
178 PRK13011 formyltetrahydrofolat 43.7 72 0.0016 34.2 7.3 73 456-534 92-178 (286)
179 PLN02683 pyruvate dehydrogenas 43.6 89 0.0019 34.6 8.2 61 499-564 248-320 (356)
180 TIGR03458 YgfH_subfam succinat 43.6 2.5E+02 0.0054 32.6 11.9 117 446-563 6-156 (485)
181 COG3109 ProQ Activator of osmo 43.5 34 0.00074 34.5 4.4 26 197-222 103-128 (208)
182 PF02844 GARS_N: Phosphoribosy 43.3 92 0.002 28.6 6.9 83 457-560 2-90 (100)
183 COG2987 HutU Urocanate hydrata 43.3 2E+02 0.0043 33.3 10.7 112 375-490 217-370 (561)
184 TIGR00858 bioF 8-amino-7-oxono 42.9 4.2E+02 0.009 27.7 13.6 93 456-561 78-181 (360)
185 PRK08175 aminotransferase; Val 42.7 71 0.0015 34.9 7.2 96 452-561 88-202 (395)
186 PRK05234 mgsA methylglyoxal sy 42.2 1.8E+02 0.0039 28.1 9.0 87 469-566 21-116 (142)
187 PF01053 Cys_Met_Meta_PP: Cys/ 42.1 2.3E+02 0.0049 31.8 11.1 103 452-561 67-176 (386)
188 PRK12767 carbamoyl phosphate s 42.0 36 0.00077 35.9 4.7 41 457-498 3-43 (326)
189 PTZ00357 methyltransferase; Pr 41.8 2.8E+02 0.0061 34.0 12.0 70 457-527 703-797 (1072)
190 TIGR01019 sucCoAalpha succinyl 41.4 1.4E+02 0.003 32.2 9.0 103 456-560 65-171 (286)
191 PRK08618 ornithine cyclodeamin 41.3 2.2E+02 0.0048 30.7 10.7 90 454-546 126-223 (325)
192 PRK08114 cystathionine beta-ly 41.3 2.8E+02 0.0061 31.1 11.7 100 452-561 74-184 (395)
193 PRK00377 cbiT cobalt-precorrin 41.2 1.1E+02 0.0023 30.4 7.7 76 451-529 37-118 (198)
194 PF04392 ABC_sub_bind: ABC tra 41.2 17 0.00036 38.3 2.0 39 521-566 183-221 (294)
195 PRK11302 DNA-binding transcrip 41.2 4E+02 0.0086 27.6 12.2 44 485-529 182-225 (284)
196 PF01380 SIS: SIS domain SIS d 40.8 2.3E+02 0.005 25.2 9.2 49 482-530 56-105 (131)
197 PRK10537 voltage-gated potassi 40.7 4.7E+02 0.01 29.4 13.4 93 455-566 240-339 (393)
198 PRK06836 aspartate aminotransf 40.4 2.7E+02 0.0058 30.4 11.3 55 452-512 94-148 (394)
199 PRK05967 cystathionine beta-ly 40.3 2.5E+02 0.0055 31.5 11.1 98 456-561 81-184 (395)
200 cd01988 Na_H_Antiporter_C The 40.3 2.6E+02 0.0056 24.6 11.9 60 500-562 64-131 (132)
201 PRK06084 O-acetylhomoserine am 40.2 2E+02 0.0044 32.3 10.5 97 456-561 75-178 (425)
202 PRK07550 hypothetical protein; 40.2 2.6E+02 0.0056 30.3 11.1 102 452-561 88-201 (386)
203 COG2242 CobL Precorrin-6B meth 40.1 1.6E+02 0.0036 30.0 8.7 99 451-561 31-133 (187)
204 PRK07050 cystathionine beta-ly 40.0 3.7E+02 0.008 29.8 12.4 98 456-561 82-185 (394)
205 PLN00145 tyrosine/nicotianamin 39.9 1.9E+02 0.0041 32.3 10.2 96 452-561 115-228 (430)
206 PF05185 PRMT5: PRMT5 arginine 39.9 98 0.0021 35.4 8.0 83 443-527 169-263 (448)
207 TIGR03499 FlhF flagellar biosy 39.8 4.8E+02 0.011 27.6 15.3 75 454-528 193-278 (282)
208 PRK13789 phosphoribosylamine-- 39.7 56 0.0012 36.8 6.0 77 456-537 5-83 (426)
209 PLN02187 rooty/superroot1 39.7 2.8E+02 0.0061 31.4 11.6 103 452-561 129-242 (462)
210 PRK10481 hypothetical protein; 39.3 4.1E+02 0.0089 27.8 11.7 85 471-561 122-211 (224)
211 cd05006 SIS_GmhA Phosphoheptos 39.3 3.7E+02 0.0079 26.1 12.2 43 488-530 111-153 (177)
212 PRK12320 hypothetical protein; 38.9 59 0.0013 39.3 6.3 99 457-565 2-103 (699)
213 PTZ00187 succinyl-CoA syntheta 38.8 1.2E+02 0.0027 33.2 8.2 102 456-561 90-198 (317)
214 TIGR02429 pcaI_scoA_fam 3-oxoa 38.8 2.2E+02 0.0049 29.5 9.7 97 447-562 11-122 (222)
215 PRK08462 biotin carboxylase; V 38.6 60 0.0013 36.3 6.0 80 456-537 5-91 (445)
216 PF03709 OKR_DC_1_N: Orn/Lys/A 38.5 41 0.0009 30.9 3.9 66 496-566 8-77 (115)
217 PRK03369 murD UDP-N-acetylmura 38.5 1.9E+02 0.0041 33.1 10.1 91 452-561 9-99 (488)
218 PRK05764 aspartate aminotransf 38.3 2.5E+02 0.0054 30.3 10.6 96 452-561 89-202 (393)
219 PRK06108 aspartate aminotransf 37.9 2.9E+02 0.0063 29.6 10.9 96 452-561 82-196 (382)
220 cd00615 Orn_deC_like Ornithine 37.7 3.7E+02 0.008 28.1 11.5 97 456-563 76-190 (294)
221 PRK08912 hypothetical protein; 37.6 3.7E+02 0.008 29.1 11.7 91 456-560 89-196 (387)
222 KOG1549 Cysteine desulfurase N 37.4 3.1E+02 0.0068 31.4 11.2 108 451-561 97-216 (428)
223 PF02595 Gly_kinase: Glycerate 37.3 18 0.00038 40.5 1.6 52 516-569 278-329 (377)
224 cd06433 GT_2_WfgS_like WfgS an 37.2 2.7E+02 0.0059 25.9 9.4 47 457-503 3-50 (202)
225 PRK09147 succinyldiaminopimela 37.1 2.7E+02 0.0058 30.3 10.6 93 456-560 92-203 (396)
226 PF01113 DapB_N: Dihydrodipico 37.0 56 0.0012 30.3 4.6 96 457-566 2-101 (124)
227 PRK14101 bifunctional glucokin 36.9 3.4E+02 0.0074 32.2 12.1 83 445-528 458-564 (638)
228 PLN02242 methionine gamma-lyas 36.8 3.1E+02 0.0068 30.8 11.3 99 456-561 93-198 (418)
229 TIGR01825 gly_Cac_T_rel pyrido 36.5 3.7E+02 0.0079 28.8 11.4 97 456-561 95-198 (385)
230 PRK07765 para-aminobenzoate sy 36.4 1.7E+02 0.0036 29.9 8.3 80 482-568 2-88 (214)
231 PLN00143 tyrosine/nicotianamin 36.3 4.4E+02 0.0096 29.0 12.3 108 440-561 79-208 (409)
232 COG0373 HemA Glutamyl-tRNA red 36.3 1.3E+02 0.0028 34.3 8.0 70 454-530 177-246 (414)
233 cd06452 SepCysS Sep-tRNA:Cys-t 36.2 4.5E+02 0.0097 28.2 12.0 98 455-562 60-175 (361)
234 PRK13527 glutamine amidotransf 36.1 84 0.0018 31.4 6.0 83 481-568 3-89 (200)
235 PF03320 FBPase_glpX: Bacteria 36.0 1.1E+02 0.0025 33.3 7.3 45 474-521 146-193 (309)
236 PRK07324 transaminase; Validat 36.0 2.1E+02 0.0045 31.1 9.5 103 452-561 78-191 (373)
237 PRK07688 thiamine/molybdopteri 35.8 3.8E+02 0.0082 29.4 11.5 109 444-563 14-148 (339)
238 cd01516 FBPase_glpX Bacterial 35.8 1.1E+02 0.0024 33.5 7.1 45 474-521 146-193 (309)
239 TIGR01133 murG undecaprenyldip 35.7 3.6E+02 0.0077 28.2 11.0 53 496-562 223-276 (348)
240 PRK06939 2-amino-3-ketobutyrat 35.6 1.4E+02 0.003 32.1 8.0 29 537-566 181-213 (397)
241 PRK06225 aspartate aminotransf 35.4 2.6E+02 0.0057 30.2 10.2 101 452-562 81-196 (380)
242 PLN02214 cinnamoyl-CoA reducta 35.3 2.6E+02 0.0057 29.9 10.1 107 454-562 9-124 (342)
243 PRK03244 argD acetylornithine 35.2 4.1E+02 0.0089 28.9 11.7 102 455-561 104-222 (398)
244 PRK07178 pyruvate carboxylase 35.2 79 0.0017 35.9 6.3 81 456-536 3-87 (472)
245 TIGR02356 adenyl_thiF thiazole 35.0 3.5E+02 0.0075 27.2 10.3 109 444-563 11-143 (202)
246 PRK05957 aspartate aminotransf 35.0 3.4E+02 0.0074 29.6 11.0 94 454-561 89-198 (389)
247 cd00611 PSAT_like Phosphoserin 34.9 4.3E+02 0.0094 28.5 11.7 97 454-563 62-170 (355)
248 PTZ00182 3-methyl-2-oxobutanat 34.9 2E+02 0.0042 31.9 9.1 48 516-568 278-329 (355)
249 PF00582 Usp: Universal stress 34.7 3E+02 0.0064 23.7 11.1 38 522-562 102-139 (140)
250 PRK06141 ornithine cyclodeamin 34.7 3.2E+02 0.0068 29.5 10.5 90 454-546 124-221 (314)
251 PLN02855 Bifunctional selenocy 34.6 5E+02 0.011 28.6 12.3 101 455-561 95-208 (424)
252 PRK08960 hypothetical protein; 34.5 2.5E+02 0.0053 30.5 9.8 95 452-560 90-202 (387)
253 PRK12354 carbamate kinase; Rev 34.3 1.2E+02 0.0026 33.2 7.2 57 444-501 31-91 (307)
254 PRK08247 cystathionine gamma-s 34.2 5.7E+02 0.012 27.9 12.5 96 457-566 70-175 (366)
255 cd02525 Succinoglycan_BP_ExoA 34.1 1.4E+02 0.003 29.2 7.2 56 457-512 5-63 (249)
256 cd01973 Nitrogenase_VFe_beta_l 33.9 7.7E+02 0.017 28.2 16.8 149 395-566 259-410 (454)
257 TIGR03609 S_layer_CsaB polysac 33.9 1.2E+02 0.0026 31.8 7.0 52 515-566 57-109 (298)
258 PRK07681 aspartate aminotransf 33.8 2.8E+02 0.0062 30.2 10.2 102 452-560 90-203 (399)
259 PRK13566 anthranilate synthase 33.7 1.8E+02 0.0039 35.4 9.2 83 477-566 523-608 (720)
260 PRK06767 methionine gamma-lyas 33.7 4.1E+02 0.0088 29.3 11.4 98 456-561 78-181 (386)
261 PRK05562 precorrin-2 dehydroge 33.7 2.5E+02 0.0055 29.2 9.2 95 454-564 24-118 (223)
262 PRK07340 ornithine cyclodeamin 33.6 3.3E+02 0.0072 29.2 10.4 89 454-546 124-219 (304)
263 PRK08762 molybdopterin biosynt 33.5 5.6E+02 0.012 28.3 12.5 109 444-563 125-257 (376)
264 PF04413 Glycos_transf_N: 3-De 33.5 1.4E+02 0.003 29.9 7.1 96 455-564 21-126 (186)
265 COG0451 WcaG Nucleoside-diphos 33.5 1E+02 0.0022 31.6 6.3 101 458-565 3-116 (314)
266 TIGR01264 tyr_amTase_E tyrosin 33.4 3.1E+02 0.0068 29.9 10.4 96 452-561 93-206 (401)
267 COG0707 MurG UDP-N-acetylgluco 33.3 2E+02 0.0044 31.8 8.9 96 454-566 182-282 (357)
268 PRK09288 purT phosphoribosylgl 33.2 45 0.00097 36.3 3.8 73 455-533 12-86 (395)
269 TIGR03693 ocin_ThiF_like putat 33.2 5.3E+02 0.012 31.1 12.5 100 454-561 128-236 (637)
270 PRK08361 aspartate aminotransf 33.1 3.8E+02 0.0083 29.1 11.0 103 452-561 91-204 (391)
271 cd00613 GDC-P Glycine cleavage 32.9 5.9E+02 0.013 27.4 12.4 99 456-561 83-194 (398)
272 PRK02705 murD UDP-N-acetylmura 32.9 2.6E+02 0.0057 31.2 9.9 71 458-530 3-76 (459)
273 PRK05784 phosphoribosylamine-- 32.8 58 0.0012 37.5 4.8 77 457-534 2-81 (486)
274 PRK00451 glycine dehydrogenase 32.7 6.8E+02 0.015 27.8 13.1 99 456-562 131-239 (447)
275 PRK02910 light-independent pro 32.7 8.4E+02 0.018 28.3 16.8 92 454-563 292-387 (519)
276 TIGR03217 4OH_2_O_val_ald 4-hy 32.5 1.7E+02 0.0036 32.1 8.0 59 457-515 105-166 (333)
277 PRK08064 cystathionine beta-ly 32.5 4.4E+02 0.0095 29.1 11.4 98 456-562 71-174 (390)
278 PRK11892 pyruvate dehydrogenas 32.3 1.7E+02 0.0036 33.8 8.3 68 496-568 357-436 (464)
279 PF12842 DUF3819: Domain of un 32.1 4.8E+02 0.01 25.3 11.0 93 351-451 29-126 (147)
280 PRK06460 hypothetical protein; 32.0 5.5E+02 0.012 28.2 12.1 15 547-561 151-165 (376)
281 PRK07777 aminotransferase; Val 32.0 4.6E+02 0.0099 28.4 11.3 51 455-511 86-136 (387)
282 PRK14478 nitrogenase molybdenu 31.9 8E+02 0.017 28.2 13.7 114 428-562 299-417 (475)
283 PF06574 FAD_syn: FAD syntheta 31.6 3E+02 0.0064 26.9 8.9 106 455-564 5-145 (157)
284 COG0074 SucD Succinyl-CoA synt 31.6 2.1E+02 0.0046 31.1 8.3 105 456-562 67-175 (293)
285 PF08659 KR: KR domain; Inter 31.5 4.2E+02 0.0091 25.7 10.0 106 458-565 4-136 (181)
286 PRK00726 murG undecaprenyldiph 31.5 5.3E+02 0.011 27.3 11.5 93 455-564 183-280 (357)
287 COG1648 CysG Siroheme synthase 31.4 1.3E+02 0.0027 31.0 6.5 96 454-565 11-106 (210)
288 PRK06348 aspartate aminotransf 31.4 3.7E+02 0.0079 29.2 10.5 95 452-560 87-199 (384)
289 PF00411 Ribosomal_S11: Riboso 31.2 1.4E+02 0.003 27.6 6.1 47 465-514 47-95 (110)
290 PLN02591 tryptophan synthase 31.2 5.3E+02 0.012 27.2 11.2 102 456-562 81-195 (250)
291 PRK06207 aspartate aminotransf 31.2 5.6E+02 0.012 28.2 12.0 93 455-561 103-216 (405)
292 TIGR01822 2am3keto_CoA 2-amino 30.8 2.3E+02 0.0049 30.6 8.7 16 546-561 190-205 (393)
293 cd00757 ThiF_MoeB_HesA_family 30.7 2.9E+02 0.0063 28.2 9.0 110 444-563 11-143 (228)
294 PRK07811 cystathionine gamma-s 30.7 3.5E+02 0.0076 29.9 10.3 97 458-562 80-182 (388)
295 PRK07179 hypothetical protein; 30.7 4.7E+02 0.01 28.6 11.2 97 455-561 115-216 (407)
296 PLN02509 cystathionine beta-ly 30.7 4.9E+02 0.011 29.9 11.7 92 457-561 151-252 (464)
297 PRK08636 aspartate aminotransf 30.7 4.7E+02 0.01 28.6 11.2 99 456-561 97-213 (403)
298 PRK00770 deoxyhypusine synthas 30.6 83 0.0018 35.4 5.4 111 453-564 50-196 (384)
299 PRK07366 succinyldiaminopimela 30.3 3.8E+02 0.0082 29.0 10.4 95 456-560 94-202 (388)
300 COG0520 csdA Selenocysteine ly 30.3 7.3E+02 0.016 27.9 12.8 97 455-561 85-197 (405)
301 PRK05690 molybdopterin biosynt 30.2 6.5E+02 0.014 26.2 12.2 110 443-562 21-153 (245)
302 TIGR03812 tyr_de_CO2_Arch tyro 30.0 6.6E+02 0.014 26.7 12.1 101 454-563 76-190 (373)
303 PRK07589 ornithine cyclodeamin 29.7 4.6E+02 0.01 29.0 10.9 98 447-547 119-228 (346)
304 PRK07523 gluconate 5-dehydroge 29.6 3.2E+02 0.0069 27.3 9.1 108 454-565 9-146 (255)
305 PF00670 AdoHcyase_NAD: S-aden 29.6 2.6E+02 0.0057 27.8 8.1 69 448-528 16-84 (162)
306 TIGR03492 conserved hypothetic 29.3 5.8E+02 0.012 28.4 11.7 34 515-563 289-322 (396)
307 PRK13392 5-aminolevulinate syn 29.3 7.9E+02 0.017 26.9 14.1 19 547-566 199-217 (410)
308 PRK08363 alanine aminotransfer 29.2 3.7E+02 0.008 29.3 10.1 54 452-511 91-144 (398)
309 PRK08776 cystathionine gamma-s 29.1 6.5E+02 0.014 28.1 12.1 98 456-561 77-180 (405)
310 PF13580 SIS_2: SIS domain; PD 29.0 1.4E+02 0.0029 28.2 5.8 28 452-479 101-131 (138)
311 PRK08591 acetyl-CoA carboxylas 28.9 1.5E+02 0.0033 33.0 7.2 80 456-537 3-89 (451)
312 TIGR01814 kynureninase kynuren 28.9 5.6E+02 0.012 28.1 11.5 105 454-561 86-206 (406)
313 PRK08063 enoyl-(acyl carrier p 28.8 2.8E+02 0.006 27.5 8.4 97 455-554 4-126 (250)
314 PRK12771 putative glutamate sy 28.8 4.5E+02 0.0098 30.5 11.2 77 452-530 134-230 (564)
315 PRK06027 purU formyltetrahydro 28.7 1.7E+02 0.0037 31.4 7.2 73 456-534 92-178 (286)
316 cd05212 NAD_bind_m-THF_DH_Cycl 28.5 2.7E+02 0.0058 26.8 7.8 43 488-530 35-79 (140)
317 cd01483 E1_enzyme_family Super 28.5 3.7E+02 0.008 25.0 8.7 97 458-564 2-122 (143)
318 TIGR00655 PurU formyltetrahydr 28.4 2E+02 0.0044 30.8 7.7 68 456-529 87-167 (280)
319 COG0075 Serine-pyruvate aminot 28.4 5.6E+02 0.012 29.0 11.3 102 454-563 55-168 (383)
320 PLN00175 aminotransferase fami 28.2 6E+02 0.013 28.1 11.7 91 456-560 117-224 (413)
321 PRK06358 threonine-phosphate d 28.1 4.1E+02 0.0089 28.6 10.1 94 452-561 69-179 (354)
322 PRK10116 universal stress prot 28.1 4.5E+02 0.0098 23.7 10.2 36 522-562 102-137 (142)
323 COG0549 ArcC Carbamate kinase 27.8 1.2E+02 0.0026 33.1 5.8 61 445-507 32-105 (312)
324 cd05013 SIS_RpiR RpiR-like pro 27.8 4E+02 0.0087 23.6 8.5 38 492-529 74-111 (139)
325 TIGR03403 nifS_epsilon cystein 27.7 7.9E+02 0.017 26.4 13.3 102 454-561 60-175 (382)
326 cd01980 Chlide_reductase_Y Chl 27.6 7.9E+02 0.017 27.5 12.5 111 432-564 261-376 (416)
327 PRK09257 aromatic amino acid a 27.2 6.3E+02 0.014 27.5 11.5 99 457-561 97-210 (396)
328 TIGR00330 glpX fructose-1,6-bi 27.1 1.9E+02 0.004 31.9 7.0 44 474-520 146-192 (321)
329 TIGR00746 arcC carbamate kinas 27.0 4.1E+02 0.009 29.0 9.8 30 443-472 30-60 (310)
330 PLN02166 dTDP-glucose 4,6-dehy 27.0 2.3E+02 0.005 32.0 8.2 107 455-565 120-235 (436)
331 cd00640 Trp-synth-beta_II Tryp 26.9 4.8E+02 0.011 26.4 9.9 57 454-514 49-105 (244)
332 PF08032 SpoU_sub_bind: RNA 2' 26.8 1.7E+02 0.0037 24.0 5.5 51 470-520 7-58 (76)
333 PRK12655 fructose-6-phosphate 26.8 6.7E+02 0.014 26.1 10.8 97 464-567 62-168 (220)
334 cd06502 TA_like Low-specificit 26.7 5.5E+02 0.012 26.8 10.5 102 454-561 47-164 (338)
335 PLN02695 GDP-D-mannose-3',5'-e 26.7 2.9E+02 0.0063 30.1 8.7 107 451-565 17-137 (370)
336 cd04185 GT_2_like_b Subfamily 26.6 3.2E+02 0.007 26.1 8.2 45 457-501 2-47 (202)
337 COG2014 Uncharacterized conser 26.6 1.1E+02 0.0024 32.1 5.0 97 448-572 106-206 (250)
338 CHL00194 ycf39 Ycf39; Provisio 26.5 3.6E+02 0.0079 28.4 9.2 102 457-565 2-110 (317)
339 PRK15029 arginine decarboxylas 26.5 2.6E+02 0.0056 34.3 8.9 89 482-573 2-102 (755)
340 PRK09982 universal stress prot 26.5 5.2E+02 0.011 23.9 10.1 35 522-562 103-137 (142)
341 cd01996 Alpha_ANH_like_III Thi 26.5 5.1E+02 0.011 24.2 9.3 104 456-565 3-111 (154)
342 PRK02948 cysteine desulfurase; 26.5 8.3E+02 0.018 26.2 15.7 104 454-562 60-174 (381)
343 TIGR00215 lpxB lipid-A-disacch 26.4 8.3E+02 0.018 26.9 12.3 43 505-563 251-293 (385)
344 PF13241 NAD_binding_7: Putati 26.3 92 0.002 27.8 4.0 87 454-563 6-92 (103)
345 TIGR01214 rmlD dTDP-4-dehydror 26.2 1.8E+02 0.004 29.6 6.7 27 540-566 76-102 (287)
346 PRK13111 trpA tryptophan synth 26.1 8E+02 0.017 26.0 12.1 105 456-562 92-206 (258)
347 PRK00207 sulfur transfer compl 26.0 2E+02 0.0042 27.2 6.3 72 483-566 4-82 (128)
348 COG0608 RecJ Single-stranded D 25.9 2.8E+02 0.006 31.9 8.7 84 443-531 24-122 (491)
349 PF07046 CRA_rpt: Cytoplasmic 25.7 74 0.0016 24.7 2.7 27 191-217 3-29 (42)
350 cd06442 DPM1_like DPM1_like re 25.7 2.2E+02 0.0047 27.5 6.8 20 469-488 43-62 (224)
351 PRK15456 universal stress prot 25.6 1.9E+02 0.0041 26.5 6.1 37 522-562 105-141 (142)
352 PRK05942 aspartate aminotransf 25.6 4.5E+02 0.0096 28.7 9.9 92 456-561 99-208 (394)
353 PRK12342 hypothetical protein; 25.5 3.6E+02 0.0079 28.6 8.8 91 457-569 55-149 (254)
354 PRK14852 hypothetical protein; 25.5 7.3E+02 0.016 31.6 12.5 130 426-564 304-457 (989)
355 PRK00885 phosphoribosylamine-- 25.5 1.7E+02 0.0037 32.4 6.8 70 457-533 2-73 (420)
356 PLN00203 glutamyl-tRNA reducta 25.5 3.9E+02 0.0085 31.3 9.8 71 455-529 266-336 (519)
357 TIGR01142 purT phosphoribosylg 25.4 1.8E+02 0.0039 31.5 6.8 72 457-534 1-74 (380)
358 TIGR01963 PHB_DH 3-hydroxybuty 25.4 4.9E+02 0.011 25.7 9.4 104 456-563 2-135 (255)
359 PRK13143 hisH imidazole glycer 25.3 3E+02 0.0065 27.5 7.9 83 482-570 2-85 (200)
360 PRK11543 gutQ D-arabinose 5-ph 25.3 8.3E+02 0.018 25.8 12.8 37 493-529 104-140 (321)
361 TIGR01746 Thioester-redct thio 25.2 7.8E+02 0.017 25.5 12.0 46 518-563 84-135 (367)
362 cd01491 Ube1_repeat1 Ubiquitin 25.2 4.8E+02 0.01 28.2 9.8 109 444-563 9-137 (286)
363 cd01748 GATase1_IGP_Synthase T 25.1 2E+02 0.0044 28.5 6.6 70 496-568 13-83 (198)
364 PRK02472 murD UDP-N-acetylmura 25.1 4.8E+02 0.01 28.9 10.2 92 454-560 4-96 (447)
365 PRK06176 cystathionine gamma-s 25.1 8.4E+02 0.018 26.9 12.0 97 456-561 67-169 (380)
366 TIGR01181 dTDP_gluc_dehyt dTDP 25.1 3E+02 0.0066 28.0 8.1 107 458-564 2-125 (317)
367 PLN02896 cinnamyl-alcohol dehy 25.1 6.7E+02 0.014 26.7 11.0 108 454-565 9-138 (353)
368 TIGR01279 DPOR_bchN light-inde 24.9 1E+03 0.022 26.7 13.2 60 495-563 168-228 (407)
369 cd00610 OAT_like Acetyl ornith 24.8 8.3E+02 0.018 26.3 11.8 29 533-561 200-230 (413)
370 TIGR03540 DapC_direct LL-diami 24.8 6.4E+02 0.014 27.2 10.9 96 455-560 92-201 (383)
371 cd01979 Pchlide_reductase_N Pc 24.8 1.9E+02 0.0041 32.1 7.0 91 464-563 138-230 (396)
372 PRK13010 purU formyltetrahydro 24.7 2.7E+02 0.0058 30.1 7.8 67 456-528 96-175 (289)
373 COG0771 MurD UDP-N-acetylmuram 24.7 1.4E+02 0.003 34.3 5.9 69 455-528 7-75 (448)
374 PRK05557 fabG 3-ketoacyl-(acyl 24.6 5.3E+02 0.011 25.1 9.4 75 455-531 5-92 (248)
375 PRK09148 aminotransferase; Val 24.6 4.2E+02 0.0092 29.1 9.6 101 452-560 89-202 (405)
376 cd00381 IMPDH IMPDH: The catal 24.5 4.9E+02 0.011 28.3 9.9 48 460-511 115-162 (325)
377 PRK06425 histidinol-phosphate 24.4 2.3E+02 0.005 30.1 7.3 95 453-561 56-160 (332)
378 PRK07877 hypothetical protein; 24.4 6.2E+02 0.013 31.0 11.5 121 432-564 85-229 (722)
379 PF04321 RmlD_sub_bind: RmlD s 24.3 86 0.0019 33.0 4.0 97 457-571 2-108 (286)
380 PRK12743 oxidoreductase; Provi 24.2 3.1E+02 0.0067 27.6 7.9 74 455-530 2-88 (256)
381 PRK05597 molybdopterin biosynt 24.1 8.1E+02 0.018 27.0 11.6 110 444-563 18-150 (355)
382 COG0031 CysK Cysteine synthase 24.1 1.8E+02 0.0038 31.8 6.3 176 345-530 70-264 (300)
383 PRK09135 pteridine reductase; 23.9 2.1E+02 0.0047 28.1 6.5 97 454-553 5-128 (249)
384 PRK07049 methionine gamma-lyas 23.8 7.1E+02 0.015 28.0 11.3 55 455-513 99-155 (427)
385 PRK01362 putative translaldola 23.7 4.6E+02 0.0099 27.1 8.9 63 467-535 63-128 (214)
386 PRK11242 DNA-binding transcrip 23.7 7.9E+02 0.017 25.0 13.6 138 381-533 18-165 (296)
387 cd01080 NAD_bind_m-THF_DH_Cycl 23.7 4.5E+02 0.0098 26.0 8.6 52 454-530 43-95 (168)
388 PRK00414 gmhA phosphoheptose i 23.7 7.4E+02 0.016 24.7 13.2 36 493-528 126-161 (192)
389 PRK14362 Maf-like protein; Pro 23.6 4.4E+02 0.0096 27.1 8.8 75 477-561 30-113 (207)
390 PRK06290 aspartate aminotransf 23.6 6E+02 0.013 28.2 10.5 93 452-558 103-214 (410)
391 PF08484 Methyltransf_14: C-me 23.5 1.6E+02 0.0035 28.9 5.4 57 439-496 52-108 (160)
392 PRK07682 hypothetical protein; 23.5 7.8E+02 0.017 26.5 11.2 52 455-512 82-133 (378)
393 TIGR01265 tyr_nico_aTase tyros 23.5 5.1E+02 0.011 28.3 9.9 94 454-561 96-207 (403)
394 TIGR01465 cobM_cbiF precorrin- 23.5 7.1E+02 0.015 25.0 10.3 52 469-521 62-116 (229)
395 PRK08287 cobalt-precorrin-6Y C 23.5 4.5E+02 0.0098 25.5 8.6 74 452-529 29-104 (187)
396 TIGR03542 DAPAT_plant LL-diami 23.2 3.3E+02 0.0072 29.8 8.4 101 452-560 93-210 (402)
397 PRK00414 gmhA phosphoheptose i 23.1 3.1E+02 0.0066 27.5 7.5 37 522-565 111-147 (192)
398 PRK12828 short chain dehydroge 23.1 4.8E+02 0.01 25.3 8.8 109 454-565 6-141 (239)
399 PRK07505 hypothetical protein; 23.0 9.2E+02 0.02 26.3 11.8 101 456-561 107-214 (402)
400 PLN02476 O-methyltransferase 23.0 8.9E+02 0.019 26.1 11.3 77 453-532 117-204 (278)
401 cd00956 Transaldolase_FSA Tran 22.9 8.2E+02 0.018 25.0 12.2 71 493-567 89-166 (211)
402 PRK14571 D-alanyl-alanine synt 22.9 1.7E+02 0.0038 30.7 6.0 41 493-533 20-64 (299)
403 PRK02006 murD UDP-N-acetylmura 22.8 4.8E+02 0.01 29.7 9.9 71 455-530 7-77 (498)
404 PRK07269 cystathionine gamma-s 22.8 7.7E+02 0.017 27.0 11.1 97 456-561 71-171 (364)
405 PRK07337 aminotransferase; Val 22.8 7.1E+02 0.015 26.9 10.8 96 452-561 88-201 (388)
406 PRK13937 phosphoheptose isomer 22.8 7.5E+02 0.016 24.4 13.1 34 495-528 123-156 (188)
407 TIGR01139 cysK cysteine syntha 22.6 1.4E+02 0.003 31.6 5.2 58 452-513 54-111 (298)
408 PRK05664 threonine-phosphate d 22.6 8.4E+02 0.018 25.9 11.1 102 455-566 65-166 (330)
409 PRK09212 pyruvate dehydrogenas 22.5 5.5E+02 0.012 28.0 9.8 52 499-555 221-280 (327)
410 PRK09136 5'-methylthioadenosin 22.5 3.6E+02 0.0078 28.3 8.1 76 459-566 127-206 (245)
411 TIGR01110 mdcA malonate decarb 22.3 9.4E+02 0.02 28.5 11.8 136 425-565 11-183 (543)
412 cd04179 DPM_DPG-synthase_like 22.2 2.9E+02 0.0062 25.7 6.8 47 458-504 3-52 (185)
413 PRK06719 precorrin-2 dehydroge 22.2 3.3E+02 0.0072 26.4 7.3 90 454-563 12-101 (157)
414 PRK13181 hisH imidazole glycer 22.0 1.3E+02 0.0029 29.9 4.6 71 495-568 13-84 (199)
415 PLN02735 carbamoyl-phosphate s 21.9 4.7E+02 0.01 33.4 10.3 63 497-564 1007-1076(1102)
416 PRK03803 murD UDP-N-acetylmura 21.9 5.4E+02 0.012 28.7 9.9 91 453-560 4-96 (448)
417 COG0424 Maf Nucleotide-binding 21.9 2.7E+02 0.0058 28.6 6.7 71 469-550 16-91 (193)
418 PRK15418 transcriptional regul 21.8 7.9E+02 0.017 26.7 10.8 88 445-535 106-214 (318)
419 PRK12656 fructose-6-phosphate 21.8 6.6E+02 0.014 26.2 9.7 63 467-535 66-132 (222)
420 PRK14361 Maf-like protein; Pro 21.8 4.6E+02 0.0099 26.5 8.3 76 477-561 17-98 (187)
421 PRK12325 prolyl-tRNA synthetas 21.7 1.7E+02 0.0037 33.1 5.9 45 480-524 345-395 (439)
422 PRK06111 acetyl-CoA carboxylas 21.6 1.6E+02 0.0035 32.7 5.7 32 456-489 3-34 (450)
423 TIGR02434 CobF precorrin-6A sy 21.6 3.8E+02 0.0082 28.3 8.0 24 539-563 183-206 (249)
424 PRK01372 ddl D-alanine--D-alan 21.5 2.9E+02 0.0063 28.9 7.3 39 493-531 24-65 (304)
425 TIGR01306 GMP_reduct_2 guanosi 21.4 7.9E+02 0.017 27.1 10.7 49 460-512 117-165 (321)
426 TIGR02463 MPGP_rel mannosyl-3- 21.4 1E+02 0.0022 30.6 3.7 44 467-515 21-65 (221)
427 PRK13936 phosphoheptose isomer 21.4 8.3E+02 0.018 24.4 12.1 38 520-564 109-146 (197)
428 TIGR01426 MGT glycosyltransfer 21.4 2.5E+02 0.0054 30.4 7.0 32 529-566 92-123 (392)
429 PRK00048 dihydrodipicolinate r 21.4 3.9E+02 0.0083 27.9 8.1 86 457-562 3-90 (257)
430 PRK13936 phosphoheptose isomer 21.3 8.3E+02 0.018 24.4 14.8 35 495-529 128-165 (197)
431 PF00391 PEP-utilizers: PEP-ut 21.3 54 0.0012 28.2 1.5 35 519-564 27-61 (80)
432 TIGR02764 spore_ybaN_pdaB poly 21.3 1.9E+02 0.0042 28.2 5.6 39 443-481 140-184 (191)
433 PRK15062 hydrogenase isoenzyme 21.2 2.6E+02 0.0057 31.4 7.0 48 512-562 171-218 (364)
434 PRK10463 hydrogenase nickel in 21.2 8.8E+02 0.019 26.3 10.8 72 437-513 84-162 (290)
435 COG0436 Aspartate/tyrosine/aro 20.9 7.6E+02 0.017 27.5 10.7 105 449-560 84-200 (393)
436 cd01971 Nitrogenase_VnfN_like 20.8 1.2E+03 0.026 26.1 17.8 98 455-563 293-396 (427)
437 KOG3349 Predicted glycosyltran 20.8 1.6E+02 0.0034 29.5 4.6 54 449-506 75-128 (170)
438 KOG1000 Chromatin remodeling p 20.8 1.2E+03 0.025 27.9 11.9 75 454-528 491-568 (689)
439 PRK06015 keto-hydroxyglutarate 20.8 4.5E+02 0.0098 27.0 8.2 76 485-560 9-101 (201)
440 cd01065 NAD_bind_Shikimate_DH 20.8 4E+02 0.0087 24.6 7.4 72 454-530 18-89 (155)
441 PRK04663 murD UDP-N-acetylmura 20.7 5.8E+02 0.012 28.6 9.8 90 456-561 8-97 (438)
442 PRK12727 flagellar biosynthesi 20.7 1.5E+03 0.032 27.1 15.1 81 450-530 345-436 (559)
443 cd04252 AAK_NAGK-fArgBP AAK_NA 20.7 6.4E+02 0.014 26.2 9.5 106 456-564 30-172 (248)
444 PRK02842 light-independent pro 20.6 5.4E+02 0.012 28.9 9.6 59 495-563 181-240 (427)
445 TIGR00514 accC acetyl-CoA carb 20.6 1.4E+02 0.0031 33.4 5.0 31 456-488 3-33 (449)
446 PRK07904 short chain dehydroge 20.6 3.7E+02 0.0081 27.3 7.7 78 452-530 5-95 (253)
447 TIGR01469 cobA_cysG_Cterm urop 20.5 5E+02 0.011 26.2 8.5 52 469-521 68-122 (236)
448 PRK09105 putative aminotransfe 20.4 9.3E+02 0.02 26.2 11.1 56 452-513 93-148 (370)
449 PRK11908 NAD-dependent epimera 20.2 3.7E+02 0.0081 28.5 7.9 105 457-565 3-119 (347)
450 TIGR00875 fsa_talC_mipB fructo 20.1 9.7E+02 0.021 24.7 10.5 66 464-535 60-128 (213)
451 PF00185 OTCace: Aspartate/orn 20.1 3.9E+02 0.0084 25.9 7.3 73 454-528 1-79 (158)
452 PRK13152 hisH imidazole glycer 20.1 1.8E+02 0.0039 29.0 5.2 69 495-567 13-84 (201)
453 TIGR01821 5aminolev_synth 5-am 20.1 1.1E+03 0.025 25.5 14.1 108 446-561 97-212 (402)
454 PRK14058 acetylglutamate/acety 20.0 6E+02 0.013 26.7 9.2 46 516-561 142-187 (268)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-108 Score=873.39 Aligned_cols=528 Identities=51% Similarity=0.794 Sum_probs=434.4
Q ss_pred CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhhhhhhccCCC
Q 006152 48 SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGS 123 (658)
Q Consensus 48 ~~~~~~~~~v~~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (658)
++.+|+++|+|||++| |.+|.+...+- ..+.....+..+ . +.+. ++...++..+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~-------~~~~--~p~~~t~s~~~-~--------- 74 (556)
T KOG1467|consen 15 DKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-E-------DKNA--EPKDLTASAKQ-A--------- 74 (556)
T ss_pred chhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-C-------cccc--Ccccccccccc-c---------
Confidence 4899999999999999 88888876441 001111111110 0 1111 11111111111 1
Q ss_pred cccccccccCCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCCcCCCCCCcceeeccccccCCCcchhhccHHHHHHH
Q 006152 124 SVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203 (658)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kaerra~ 203 (658)
...+..++|.||+|+|...+++ .+ .++..+.+....+..+..+.+.|+||||+.
T Consensus 75 ---~~~~~~s~~~~~~e~t~a~~a~---~~--------------------a~~s~~~~p~~~~~~ka~~~~~t~a~~~a~ 128 (556)
T KOG1467|consen 75 ---RVAVKASLPKGGAELTVANKAA---AA--------------------AGSSATQSPKKEKPPKAGLAVPTRAERKAI 128 (556)
T ss_pred ---ccchhhcccCCcceecccccch---hh--------------------hccccccCCcccCCcccccccccHHHHhhH
Confidence 1456789999999999773222 11 111223333444556778889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchhhcccCCCCCCCCCCC-CCCCCCccccccccCCCCCcccccccCCCCCCCcccCcHHHH
Q 006152 204 QEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRV 282 (658)
Q Consensus 204 qe~qraakaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~dd~~~~ 282 (658)
||++||+|+|+|++++..........+.+..+...|. .|+..+ ...+..-+. ++.++++|.+|+++..+.
T Consensus 129 ~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p------~~t~~~~~~---~~~~~~~pq~q~kt~~~~ 199 (556)
T KOG1467|consen 129 QEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALP------VTTSVDQAL---KRRAVQNPQNQAKTLASA 199 (556)
T ss_pred HHHHHHHHHhhhcccccccccccccccCcccccCCCcccccccc------ccccccchH---Hhhcccchhhhhhhhccc
Confidence 9999999999999976421111111111111111122 222211 111111111 577889999999888766
Q ss_pred HHhhhccccccccccCcccccccCCCceecccCcchhhhhhcccchhHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 006152 283 QKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI 362 (658)
Q Consensus 283 ~k~~~~~~~~~~~~~~~v~lf~hLP~~~~~~~~~~~e~~~~ai~~mhPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI 362 (658)
. +.|+.|+.+ ++.||+||||+.+.. ..|..+..|||||++||+||+.|+|+|+|+|||+||.+|+++|
T Consensus 200 ~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi 267 (556)
T KOG1467|consen 200 S-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVI 267 (556)
T ss_pred C-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHH
Confidence 5 777777755 899999999999864 2355666799999999999999999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 363 RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADR 442 (658)
Q Consensus 363 ~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~ 442 (658)
+||++|++++|+|+|+.+|+.+++||.+|||++++|||||||||+.|+.++.+..+.|+|+.|+++|++||+|+|..|++
T Consensus 268 ~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~q 347 (556)
T KOG1467|consen 268 KDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQ 347 (556)
T ss_pred HhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhh
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~ 522 (658)
.|++++.++|+|||+|||||+|++|+.+|++||+.|++|+|+|+||||.+||++|++.|.+.||+|||+++++++|+|.+
T Consensus 348 aI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~e 427 (556)
T KOG1467|consen 348 AISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLE 427 (556)
T ss_pred HHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccCCC
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDG 602 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~ 602 (658)
|++|||||++|++||.|++|+||+++||+|++|||||+||||+|||++|+++|++++||++||+++..++|+.+.+.|.+
T Consensus 428 vtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~ 507 (556)
T KOG1467|consen 428 VTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAG 507 (556)
T ss_pred cceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777788999
Q ss_pred ccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchHH
Q 006152 603 WDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSVR 642 (658)
Q Consensus 603 ~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv~ 642 (658)
|....++.++|++||+||||||++||||+|+++|++||++
T Consensus 508 wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvi 547 (556)
T KOG1467|consen 508 WQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVI 547 (556)
T ss_pred cccccccchhheeeccCcHHHHHHHHhhccccCCccchHH
Confidence 9999999999999999999999999999999999999987
No 2
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=3.4e-70 Score=577.47 Aligned_cols=303 Identities=22% Similarity=0.371 Sum_probs=278.4
Q ss_pred Cccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 006152 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (658)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~ 371 (658)
++|.|| +.||++.+|+.|.++++++.+|++| +|+| |. ++|++|++++.+. .
T Consensus 8 ~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApai---g~-----------~aa~~~~l~~~~~----~----- 64 (331)
T TIGR00512 8 GSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAI---GI-----------VAAYGLALAAREA----D----- 64 (331)
T ss_pred CEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHH---HH-----------HHHHHHHHHHhhc----C-----
Confidence 568899 9999999999999999999999999 6999 44 8889998888763 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006152 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (658)
Q Consensus 372 ~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~ 451 (658)
...++.+.|+.++++|.+||||++||+||++++++.+..+ .+.+++|+.+++.+++|++|. ..++++|+++|.++
T Consensus 65 -~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e~-~~~~~~I~~~g~~~ 139 (331)
T TIGR00512 65 -EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEED-LEDNRAIGENGAAL 139 (331)
T ss_pred -CHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2367888999999999999999999999999999888763 467899999999999999885 57999999999999
Q ss_pred ccCCC----EEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcchHHHH
Q 006152 452 IRDGD----VLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISY 518 (658)
Q Consensus 452 I~dgd----vILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~ 518 (658)
|++|+ +|||||||. ++.++|+.||++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|
T Consensus 140 I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~ 219 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAH 219 (331)
T ss_pred hcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHH
Confidence 99999 999999863 66799999999999999999999999999977 699999999999999999999
Q ss_pred Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccc
Q 006152 519 IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGRED 596 (658)
Q Consensus 519 ~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~ 596 (658)
+|+ +||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+..+.+|+|+|+|+..+.|.
T Consensus 220 ~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g~-- 297 (331)
T TIGR00512 220 LMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGV-- 297 (331)
T ss_pred HhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccCCc--
Confidence 999 8999999999999999999999999999999999999999999999999999888899999999999876553
Q ss_pred cccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCC
Q 006152 597 INHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSH 636 (658)
Q Consensus 597 ~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~P 636 (658)
+..+++++++||+||+||++|||+||||.|++.|
T Consensus 298 ------~~~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 298 ------RIAPPGIDVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred ------ccCCCCceeecccccCCCHHHCCEEEccCCccCC
Confidence 2456789999999999999999999999999976
No 3
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.5e-69 Score=575.80 Aligned_cols=309 Identities=23% Similarity=0.351 Sum_probs=279.0
Q ss_pred cCccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCC
Q 006152 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~ 370 (658)
.+.|.|| +.||++++|+.|.++++++.+|++| +|+| |+ +++++|.+++++ +..
T Consensus 10 ~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApai---g~-----------aaa~~lal~~~~----~~~--- 68 (344)
T PRK05720 10 DGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAI---GI-----------AAAYGMALAARE----DAS--- 68 (344)
T ss_pred CCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHH---HH-----------HHHHHHHHHHhh----ccC---
Confidence 4579999 9999999999999999999999999 6999 44 778888777654 211
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
....++.+.|+.++++|.+||||++||+|+++++++.+... +.+++++.+++.+++|++|.+ .+++.|+++|++
T Consensus 69 -~~~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~~----~~~~~~~~l~~~a~~~~~e~~-~~~~~I~~~g~~ 142 (344)
T PRK05720 69 -DDGEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAPL----PGAERKAALEEEAIEIHEEDV-EINRAIGEHGLT 142 (344)
T ss_pred -CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 12467888899999999999999999999999999887542 478999999999999999965 689999999999
Q ss_pred hccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcchHHHHHhh
Q 006152 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~~M~ 521 (658)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|+
T Consensus 143 ~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~ 222 (344)
T PRK05720 143 LIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQ 222 (344)
T ss_pred HccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhc
Confidence 999999999999984 34579999999999999999999999999977 699999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCcccccc
Q 006152 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~ 599 (658)
+||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||+++++.|..+.+|+|||+|+..++|..
T Consensus 223 ~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~~---- 298 (344)
T PRK05720 223 TGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVR---- 298 (344)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccCCcc----
Confidence 59999999999999999999999999999999999999999999999999999888899999999998776532
Q ss_pred CCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcch
Q 006152 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVS 640 (658)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVp 640 (658)
..+++++++||+||+||++|||+||||.|+++|+.+.
T Consensus 299 ----~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~ 335 (344)
T PRK05720 299 ----IAPEGVKVYNPAFDVTPAELITGIITEKGIVAPPDTA 335 (344)
T ss_pred ----cCCCCceeecccccCCCHHHCCEEEcCCCccCccHHH
Confidence 3567899999999999999999999999999998653
No 4
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=7.1e-69 Score=564.92 Aligned_cols=305 Identities=26% Similarity=0.441 Sum_probs=282.8
Q ss_pred chhHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Q 006152 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406 (658)
Q Consensus 327 ~mhPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk 406 (658)
.|||.+..++.++.+++++|+.+.|++++.+|..+++++.++ ...+|++.|+..+++|.+|||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAE----SPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999988663 3568899999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEe
Q 006152 407 SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (658)
Q Consensus 407 ~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ 486 (658)
+... ..+.+++|+.+.+.+++|++| +..++++|++++.++|.+|++|||||||++|+++|++|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 7632 346799999999999999987 67899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 487 ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcccccccCCcccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchHHHHhh
Q 006152 567 KFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSVRSACC 646 (658)
Q Consensus 567 Kf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv~~l~~ 646 (658)
||++.++.|..+.+|++|+.|++.... ....++++++||+||+||++|||+||||.|+++|+++. .+.+
T Consensus 233 K~~~~~~~~~~~~ie~~~~~ev~~~~~---------~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~--~~~~ 301 (310)
T PRK08535 233 KFSPKTLLGELVEIEERDPTEVLPEEI---------LAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAY--TIIK 301 (310)
T ss_pred eecCCCCCCCcceecccCHHHhccccc---------ccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHH--HHHH
Confidence 999999999999999999999875421 12457899999999999999999999999999999884 4677
Q ss_pred cccce
Q 006152 647 LYFHY 651 (658)
Q Consensus 647 ~yf~~ 651 (658)
.||+|
T Consensus 302 ~~~~~ 306 (310)
T PRK08535 302 EYLGW 306 (310)
T ss_pred HHhCC
Confidence 78874
No 5
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-69 Score=556.44 Aligned_cols=307 Identities=24% Similarity=0.355 Sum_probs=280.8
Q ss_pred ccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCcc
Q 006152 299 RVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKT 372 (658)
Q Consensus 299 ~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~ 372 (658)
.|.|+ +.||++..|+.|+++++++.+|++| +||| |+ +++++|+++.++.-.+ .
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAI---gv-----------~AayG~alaa~~~~~~-------~ 71 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAI---GV-----------AAAYGLALAARESKND-------S 71 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHH---HH-----------HHHHHHHHHHHhcccc-------c
Confidence 68888 9999999999999999999999999 6999 54 8999999998864322 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 006152 373 LSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKI 452 (658)
Q Consensus 373 ~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I 452 (658)
...++..+|....+.|.++|||+|||+||+++|+..+.+.. +.++.++.+.+...+..+|+ ...|+.|+++|+++|
T Consensus 72 ~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~---~v~~~~~~~~~eA~~i~~ED-~e~n~~iG~~G~~ll 147 (346)
T COG0182 72 KGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAI---EVKEPKESILQEAEEIAEED-LEANRAIGENGAELL 147 (346)
T ss_pred chHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 24688889999999999999999999999999998886543 25788888888888888775 468999999999999
Q ss_pred cCCCEEEeeCC---------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHHHHhh-
Q 006152 453 RDGDVLLTYGS---------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH- 521 (658)
Q Consensus 453 ~dgdvILT~g~---------SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~~M~- 521 (658)
.+|++|||||| ++++ ++|+.||++||..+||++||||++||.+|+ |||.+.|||+|+|+|||++|+|+
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAl-gviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~ 226 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTAL-GVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQ 226 (346)
T ss_pred ccCCeEEeeecCCceeecCccchH-HHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHh
Confidence 99999999987 4666 899999999999999999999999999996 99999999999999999999998
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccC
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHL 600 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l 600 (658)
.||+|+||||+|+.||+++||||||++|++||+|||||||++|..+||.....+..+++|+|||+||..+.|.+
T Consensus 227 g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~r----- 301 (346)
T COG0182 227 GMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVR----- 301 (346)
T ss_pred CCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeeccEE-----
Confidence 59999999999999999999999999999999999999999999999999999888999999999999988754
Q ss_pred CCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcc
Q 006152 601 DGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLV 639 (658)
Q Consensus 601 ~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssV 639 (658)
.+++++.++||+||+||++|||+||||.|++.|...
T Consensus 302 ---iap~~v~~yNPAFDvTP~~lItgIITEkGv~~p~~~ 337 (346)
T COG0182 302 ---IAPEGVEAYNPAFDVTPPELITGIITEKGVFTPPFE 337 (346)
T ss_pred ---eCCCCccccCccccCChHHhcceeeeccceecCchh
Confidence 678899999999999999999999999999999743
No 6
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=5e-68 Score=562.52 Aligned_cols=308 Identities=22% Similarity=0.303 Sum_probs=276.8
Q ss_pred Cccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCc
Q 006152 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAK 371 (658)
Q Consensus 298 ~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~ 371 (658)
+.|.|| +.||+++.|+.|.++++++.+|++| +|+| |. ++|++|+++.++.. .
T Consensus 11 ~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApai---g~-----------aaa~g~~l~~~~~~--~------ 68 (339)
T PRK06036 11 NSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPAL---GA-----------AGGYGIALAARLSK--A------ 68 (339)
T ss_pred CeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHH---HH-----------HHHHHHHHHHHhcc--c------
Confidence 578999 9999999999999999999999999 6999 54 88999998887521 1
Q ss_pred chHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006152 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (658)
Q Consensus 372 ~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~ 451 (658)
...++|.+.|+..+++|.++|||++||+|+++++++.+.. ..+.+++++.+.+.+++|++|. ..++++|+++|.++
T Consensus 69 ~~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~---~~~~~~~~~~~~e~a~~~~~e~-~~~~~~I~~~g~~~ 144 (339)
T PRK06036 69 KDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALD---AEDVEEIRDIALREAERIAEED-VARNKLIGKHGAKL 144 (339)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 1246788999999999999999999999999888775543 2457899999999999999884 68999999999999
Q ss_pred ccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHHHHhhh
Q 006152 452 IRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIHE 522 (658)
Q Consensus 452 I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~~M~~ 522 (658)
|++|++|||||||. ++.++|+.|+++||+|+|||+||||++||.+|+ |+|.+.||+||||+|+|++|+|++
T Consensus 145 I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~ 224 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQ 224 (339)
T ss_pred ccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhcc
Confidence 99999999999984 456899999999999999999999999999985 999999999999999999999986
Q ss_pred --ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccC
Q 006152 523 --VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHL 600 (658)
Q Consensus 523 --Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l 600 (658)
||+||+|||+|++|| ++||+|||++|++||+|+||||||||++||+.....| .+.+|+|+|+|+..+.|..
T Consensus 225 ~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~~----- 297 (339)
T PRK06036 225 GMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKTQ----- 297 (339)
T ss_pred CCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhccccCcc-----
Confidence 999999999999997 9999999999999999999999999999999988777 6789999999998765532
Q ss_pred CCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchH
Q 006152 601 DGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSV 641 (658)
Q Consensus 601 ~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv 641 (658)
..+++++++||+||+||++|||+||||.|++.|+.++-
T Consensus 298 ---~~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~P~~~~~ 335 (339)
T PRK06036 298 ---IAPKDVPVYNPAFDATPMENVTAIITEKGVFYPPFLLD 335 (339)
T ss_pred ---cCCCCceeeCcccccCCHHHCCEEEccCCcccCCcccc
Confidence 35678999999999999999999999999999987653
No 7
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.4e-67 Score=562.24 Aligned_cols=310 Identities=22% Similarity=0.323 Sum_probs=276.8
Q ss_pred cCccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCC
Q 006152 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~ 370 (658)
.+.|.|| +.||++++|+.|.++++++.+|++| +|+| |+ +++++|++++++.- .
T Consensus 23 ~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApai---gi-----------aAa~glal~~~~~~-~------ 81 (363)
T PRK05772 23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAI---GI-----------TAGYGMVLALIENN-V------ 81 (363)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHH---HH-----------HHHHHHHHHHHhcc-C------
Confidence 3579999 9999999999999999999999999 6999 54 88899988887631 1
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP---ISLSESEAKATLHSDIERFINEKIILADRVIVKH 447 (658)
Q Consensus 371 ~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~---~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~ 447 (658)
....++.+.|+..+++|.++|||+|||.||++++++.+.... ...+.++.++.+.+.+++|+++.+ .++++|+++
T Consensus 82 -~~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~-~~~~~I~~~ 159 (363)
T PRK05772 82 -KTLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEY-DAEIQMGLY 159 (363)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 134678888999999999999999999999999998876431 123678999999999999999965 599999999
Q ss_pred HHHhccCCCEEEeeCChH---------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHH
Q 006152 448 AVTKIRDGDVLLTYGSSS---------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAIS 517 (658)
Q Consensus 448 a~~~I~dgdvILT~g~Ss---------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~ 517 (658)
|+++|.||++|||||||. ++.++|+.|+++|++|+|||+||||++||.+|+ |+|.+.||+||||+|||++
T Consensus 160 g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~ 239 (363)
T PRK05772 160 GLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVG 239 (363)
T ss_pred HHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHH
Confidence 999999999999999884 346889999999999999999999999999885 9999999999999999999
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCcc
Q 006152 518 YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGRE 595 (658)
Q Consensus 518 ~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~ 595 (658)
|+|+ +||+||+|||+|++||+++||+|||++|++||+||||||||||+|||+++++.+ .+.+|+|+|+|++.+.|.
T Consensus 240 ~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~~-~i~ieer~p~ev~~~~~~- 317 (363)
T PRK05772 240 LVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVN-DVKIEERDPNEVRTIRGV- 317 (363)
T ss_pred HHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCcccccc-ccccccCCHHHhcccCCc-
Confidence 9996 599999999999999999999999999999999999999999999999999874 457899999999876553
Q ss_pred ccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCc
Q 006152 596 DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTL 638 (658)
Q Consensus 596 ~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~Pss 638 (658)
+..+++++++||+||+||++|||+||||+|++.|+.
T Consensus 318 -------~~~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 353 (363)
T PRK05772 318 -------PITPEDVNVYNPVFDVTPPKYITGIITEKGIIYPPF 353 (363)
T ss_pred -------eecCCCceeeccCccCCCHHHCCEEEccCCccCCch
Confidence 345788999999999999999999999999998864
No 8
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=9.3e-67 Score=546.87 Aligned_cols=289 Identities=25% Similarity=0.415 Sum_probs=258.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHH
Q 006152 342 GDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEA 421 (658)
Q Consensus 342 ~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~ea 421 (658)
++++|+.+.+++.+.++...+....+ ...++|.+.|+..+++|.+|||++++|+|++|++++.++. .+.+++
T Consensus 12 ~~vrGa~~ia~~aa~~l~~~~~~~~~----~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~----~~~~~~ 83 (301)
T TIGR00511 12 MEIRGAGRIARAAAAALMEQAAKAES----ASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG----EDVETL 83 (301)
T ss_pred CcccCcHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc----CCHHHH
Confidence 34555555555556666666654433 2457899999999999999999999999999999988853 457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH
Q 006152 422 KATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL 501 (658)
Q Consensus 422 Ke~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL 501 (658)
|+.+++.+++|++| +..++++|+++|.++|.+|++|||||||++|+++|++|+++|++|+|||+||||++||+.|+++|
T Consensus 84 k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L 162 (301)
T TIGR00511 84 RETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKEL 162 (301)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHH
Confidence 99999999999977 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccc
Q 006152 502 VRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (658)
Q Consensus 502 ~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nE 581 (658)
.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.|..+.+|
T Consensus 163 ~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~~ie 242 (301)
T TIGR00511 163 RDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELVEIE 242 (301)
T ss_pred HHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred cCCcccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchHHHHhhcccc
Q 006152 582 LGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSVRSACCLYFH 650 (658)
Q Consensus 582 lrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv~~l~~~yf~ 650 (658)
++||+|++...+. ...++++++||+||+||++|||+||||.|+++|++++.. .+.||+
T Consensus 243 ~~~~~ev~~~~~~---------~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~--l~~~~~ 300 (301)
T TIGR00511 243 ERDPTEVLDEEDL---------KQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTI--IKELLG 300 (301)
T ss_pred ccCHHHhccccCc---------cCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHH--HHHHcC
Confidence 9999999865432 234689999999999999999999999999999998743 456665
No 9
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=2.4e-66 Score=550.74 Aligned_cols=309 Identities=19% Similarity=0.277 Sum_probs=277.3
Q ss_pred cCccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCC
Q 006152 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~ 370 (658)
.+.|.|| +.||++..|+.|.++++++.+|++| +|+| |+ +++++|++++++...
T Consensus 21 ~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaI---gv-----------aAa~glal~~~~~~~------- 79 (356)
T PRK08334 21 EGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAI---GA-----------AAAFGLALYAETSKA------- 79 (356)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHH---HH-----------HHHHHHHHHHHhccc-------
Confidence 3579999 9999999999999999999999999 6999 54 888999988876321
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
....++.+.|+..+++|.++|||+|||.||+++|++.+.... ..+.++.++.+.+.++.|+++. ..++++|+++|++
T Consensus 80 -~~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~i~~~d-~~~~~~Ig~~g~~ 156 (356)
T PRK08334 80 -KTKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEEHL-EDPLDEIKRLIVEEAQKIADED-VEANLRMGHYGAE 156 (356)
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 124678888999999999999999999999999998876431 2457889999999999999885 5688999999999
Q ss_pred hccCCCEEEeeCC--------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHHHHhh
Q 006152 451 KIRDGDVLLTYGS--------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~--------SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~~M~ 521 (658)
+|.||+ |||||| +.++.++|+.|+++|+.|+|||+||||++||.+|+ |+|.+.||+||+|+|||++|+|+
T Consensus 157 li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~ 235 (356)
T PRK08334 157 VLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQ 235 (356)
T ss_pred hcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhh
Confidence 999999 999997 35677999999999999999999999999999996 99999999999999999999997
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCcccccc
Q 006152 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~ 599 (658)
+||+||+|||+|++||+++||+|||++|++||+|+|||||||+++||+..+..+..+.+|+|+|+|++.+.|.
T Consensus 236 ~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~----- 310 (356)
T PRK08334 236 QGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGC----- 310 (356)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCc-----
Confidence 7999999999999999999999999999999999999999999999999888888889999999999876542
Q ss_pred CCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcc
Q 006152 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLV 639 (658)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssV 639 (658)
...++++++||+|||||++|||+||||.|++.|+..
T Consensus 311 ----~~~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~P~~~ 346 (356)
T PRK08334 311 ----RIAPDVDVYNPAFDVTPHKYLTGIITDRGVVWPPFE 346 (356)
T ss_pred ----ccCCCcceecccccCCCHHHCCEEEcCCCccCCchH
Confidence 223479999999999999999999999999998754
No 10
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.1e-66 Score=547.12 Aligned_cols=289 Identities=22% Similarity=0.325 Sum_probs=253.8
Q ss_pred cCccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCC
Q 006152 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~ 370 (658)
.++|.|| +.||+++.|+.|.++++++.+|++| +|+| | .+++++++++..+.
T Consensus 19 ~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~i---g-----------~~aa~g~~l~~~~~--------- 75 (329)
T PRK06371 19 DGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAI---G-----------VTAAYGLAMASKNG--------- 75 (329)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHH---H-----------HHHHHHHHHHHHhH---------
Confidence 3579999 9999999999999999999999999 7999 4 37888887776532
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
..+...+++|.+||||++||+||+++|+... .+.+++++.+.|. ..++++|+++|.+
T Consensus 76 --------~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~------~~~~~a~~~~~e~---------~~~~~~I~~~g~~ 132 (329)
T PRK06371 76 --------ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE------FDMNAARRYAMEI---------IGRSKKIGEYGNE 132 (329)
T ss_pred --------HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc------CcHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 2367788999999999999999999997532 2355665544333 3478899999999
Q ss_pred hccCCCEEEeeCChH--------HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcchHHHHHhh
Q 006152 451 KIRDGDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 451 ~I~dgdvILT~g~Ss--------aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~~M~ 521 (658)
+|++|++|||||||. ++.++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|+
T Consensus 133 ~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~ 212 (329)
T PRK06371 133 LIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMR 212 (329)
T ss_pred HcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhh
Confidence 999999999999873 34689999999999999999999999999997 599999999999999999999998
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCcccccc
Q 006152 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~ 599 (658)
+||+||+|||+|++||+++||+|||++|++||+||||||||||+++|+.....+..+.+|+|+|+|++.+.|..
T Consensus 213 ~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~~---- 288 (329)
T PRK06371 213 KKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCR---- 288 (329)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccCCee----
Confidence 59999999999999999999999999999999999999999999888877777777889999999998765432
Q ss_pred CCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcc
Q 006152 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLV 639 (658)
Q Consensus 600 l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssV 639 (658)
..+++++++||+||+||++|||+||||.|+++|+.|
T Consensus 289 ----~~p~~~~v~Np~FDvTP~elIt~iITE~Gv~~p~~i 324 (329)
T PRK06371 289 ----IGPQESHARNPAFDVTPNEYVTGFITEYGIFKPNEL 324 (329)
T ss_pred ----cCCCCccccCcCccCCCHHHCCEEEccCCccChHHh
Confidence 346788999999999999999999999999999876
No 11
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=6.4e-66 Score=540.77 Aligned_cols=292 Identities=24% Similarity=0.389 Sum_probs=256.2
Q ss_pred CcchhhhhhcccchhHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcc
Q 006152 315 LPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPL 394 (658)
Q Consensus 315 ~~~~e~~~~ai~~mhPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPt 394 (658)
|+++++.+.+|+.| +++|+.+.|++.+.++..+++.+.+ ...++|.+.|+.++++|.+|||+
T Consensus 1 ~~~~~~~~~~I~~m--------------~vrGa~~ia~aa~~~l~~~~~~~~~----~~~~e~~~~l~~~~~~L~~~RPt 62 (303)
T TIGR00524 1 CRTYEDVADAIKSM--------------VVRGAPAIGVAAAYGLALAARKIET----DNVEEFKEDLEKAADFLLSTRPT 62 (303)
T ss_pred CCCHHHHHHHHHhC--------------eecChHHHHHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHhCCc
Confidence 35667777777766 3444444445555555555554433 24578889999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCCh--------HH
Q 006152 395 SVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SA 466 (658)
Q Consensus 395 sVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~S--------sa 466 (658)
+++|+|+++++++.+.. ..+.+++|+.+++.+++|++|.+ .++++|+++|.++|.+|++||||||| ++
T Consensus 63 ~v~l~na~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~~-~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~t 138 (303)
T TIGR00524 63 AVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEEDL-ETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGT 138 (303)
T ss_pred hhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCEEEEecCCccccccCcch
Confidence 99999999999988753 34678999999999999999965 58899999999999999999999999 89
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEcceeEecCCCeeccc
Q 006152 467 VEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 467 V~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKi 543 (658)
|+++|+.|+++|++|+|||+||||++|| +.++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+
T Consensus 139 v~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~ 218 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKI 218 (303)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhh
Confidence 9999999999999999999999999999 666899999999999999999999999 9999999999999999999999
Q ss_pred chHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccCCCccCCCCceeccceeeecCCCC
Q 006152 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDY 623 (658)
Q Consensus 544 GT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeL 623 (658)
|||++|++||+|+||||||||+|||+++++.+..+.+|+++|+|+....|.. ..+++++++||+||+|||+|
T Consensus 219 GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~~--------~~~~~~~v~np~fD~TP~~l 290 (303)
T TIGR00524 219 GTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVR--------IAPLGVKVYNPAFDITPHDL 290 (303)
T ss_pred hHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhccccCcc--------cCCCCceeecccccCCCHHH
Confidence 9999999999999999999999999999999888899999999998654432 23578999999999999999
Q ss_pred ccEEEeCCCCcCC
Q 006152 624 VSLIITDYGMVSH 636 (658)
Q Consensus 624 IT~IITE~Gii~P 636 (658)
||+||||.|+++|
T Consensus 291 It~iiTe~Gv~~p 303 (303)
T TIGR00524 291 IDAIITEKGIITP 303 (303)
T ss_pred CCEEEcCCCccCc
Confidence 9999999999987
No 12
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-64 Score=526.08 Aligned_cols=299 Identities=29% Similarity=0.491 Sum_probs=277.9
Q ss_pred hhHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHH
Q 006152 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (658)
Q Consensus 328 mhPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~ 407 (658)
+||.|..+...+.+++|.|+...|++++.+|++++.++.++ ..++|++.++...+.|.++||+++||+|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~----~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAP----TVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 58999999999999999999999999999999999999886 36889999999999999999999999999999987
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC
Q 006152 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (658)
Q Consensus 408 ~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E 487 (658)
. ....+.++.++.+.+.+++|+++ ++.+.+.|++.++++|+||++|||||+|++|..+|++|++.|++|+|||+|
T Consensus 78 ~----~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 D----SSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred c----ccccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 2 22345788899999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccc
Q 006152 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyK 567 (658)
|||.+||+.|+++|.+.||+|++|+|++++++|++||+||||||+|++||+++||+||++||++||++++|||||||+||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccccccCCcccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchHHHHhhc
Q 006152 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSVRSACCL 647 (658)
Q Consensus 568 f~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv~~l~~~ 647 (658)
|++++++|....+|++|++|+....+ ..+++++||+||+||++|||+||||.|+++|++++.+ +.+.
T Consensus 233 f~p~~~~~~~~~~~~~~~~e~~~~~~------------~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i-~~e~ 299 (301)
T COG1184 233 FVPKTLLDTLVEIELRDPLEVAREEP------------LGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRI-LREL 299 (301)
T ss_pred ccccccCCCcceeeccChhhccccCc------------ccCccccccccCCCcHHHhheeeecCCCCCchhHHHH-HHHh
Confidence 99999999999999999998873211 1268999999999999999999999999999999866 5554
Q ss_pred c
Q 006152 648 Y 648 (658)
Q Consensus 648 y 648 (658)
|
T Consensus 300 ~ 300 (301)
T COG1184 300 Y 300 (301)
T ss_pred h
Confidence 4
No 13
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=3.7e-65 Score=526.83 Aligned_cols=281 Identities=38% Similarity=0.599 Sum_probs=247.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 006152 343 DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAK 422 (658)
Q Consensus 343 ~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK 422 (658)
+|+|++++|++++.+|+++++++.++ ...+|++.|+.++++|.++||++++|+|+++++++.+.......+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~----~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKAT----TVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCS----SHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 58999999999999999999998764 46789999999999999999999999999999999887766677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH
Q 006152 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (658)
Q Consensus 423 e~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~ 502 (658)
+.+++.+++|++| +..+.+.|++++.++|++|++|||||||++|+.+|+.|+++|++|+|||+||||++||+.|+++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEcchHHHHHhhh-ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccc
Q 006152 503 RKGLSCTYTHINAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (658)
Q Consensus 503 ~~GI~vT~I~DsAv~~~M~~-Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nE 581 (658)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||+++++++....||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCC
Q 006152 582 LGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSH 636 (658)
Q Consensus 582 lrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~P 636 (658)
+++++|+...++.. ...++++++||+||+|||+|||+||||.|+++|
T Consensus 236 ~~~~~~v~~~~~~~--------~~~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 236 LRDPQEVLPFDGSS--------IVPENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp B--THHHHEETTEE--------ESTTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred ccccceeeccCCcc--------cccceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 99999998775542 234589999999999999999999999999987
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=4e-62 Score=504.75 Aligned_cols=232 Identities=27% Similarity=0.374 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 006152 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD 454 (658)
Q Consensus 375 r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~d 454 (658)
.++++.|....++|.++|||++||.|++++|. .++.++.+.+.+++|+++ +..++++|+++|+++|.+
T Consensus 42 ~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~-----------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~ 109 (275)
T PRK08335 42 EELENALKELREEIPEVNPTMASLYNLARFIP-----------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDD 109 (275)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 45677899999999999999999999999981 245677788999999987 678999999999999999
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
|++|||||||++|.++|+.|+++|++|+|||+||||++||++|+|+|.+.||+||||+|++++|+|++||+||+|||+|+
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~ 189 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVT 189 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccCCCccCCCCceeccc
Q 006152 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNL 614 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np 614 (658)
+||+++||+|||++|++||+|+||||||||+|||++.+..+ .+.+|++++ .+++++++||
T Consensus 190 ~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~~-~i~ieer~~-------------------~~~~~~v~Np 249 (275)
T PRK08335 190 RDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKSE-EVELVERPY-------------------ARQGHRVRNV 249 (275)
T ss_pred cCCCEeehhhHHHHHHHHHHcCCCEEEECccceecccCCCC-CccccccCC-------------------CCCCceecCc
Confidence 99999999999999999999999999999999999988776 445565543 2467899999
Q ss_pred eeeecCCCCccEEEeCCCCcCCCc
Q 006152 615 IYDATPSDYVSLIITDYGMVSHTL 638 (658)
Q Consensus 615 ~FDvTPpeLIT~IITE~Gii~Pss 638 (658)
+||+||++|||+||||.|++.|..
T Consensus 250 ~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 250 LFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred CccCCCHHHCCEEEccCCccCCCC
Confidence 999999999999999999998754
No 15
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-60 Score=482.24 Aligned_cols=312 Identities=21% Similarity=0.315 Sum_probs=275.7
Q ss_pred cCccccc--ccCCCceecccCcchhhhhhcccch----hHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCC
Q 006152 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTL----HPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370 (658)
Q Consensus 297 ~~~v~lf--~hLP~~~~~~~~~~~e~~~~ai~~m----hPAI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~ 370 (658)
+.+|++| +.||++..|+.+.++++.|..|+.| +|||. ...|+.++..++. +++.
T Consensus 10 ~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaIA--------------ivg~Lslaveiq~--~~~~---- 69 (354)
T KOG1468|consen 10 RGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAIA--------------IVGSLSLAVEIQK--KGFP---- 69 (354)
T ss_pred CchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHHH--------------HHHHHHHHHHHhh--ccCC----
Confidence 3478888 8999999999999999999999999 69993 3556777766654 3443
Q ss_pred cchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006152 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVT 450 (658)
Q Consensus 371 ~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~ 450 (658)
....+.+.|...++||.++|||+|||.|+.+.|+..+.+.. ..+...++.+++..+++++++ ...|+.|+.+|++
T Consensus 70 --~~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~--~~~~~~~~~~~~~~e~ml~~d-l~~N~~ig~~g~~ 144 (354)
T KOG1468|consen 70 --GSDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAASED--KSEKAKREKCISYTEDMLEKD-LADNRAIGDNGAK 144 (354)
T ss_pred --chHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHH
Confidence 23457888999999999999999999999999999887653 234667888889999888775 4678899999998
Q ss_pred hccC------CCEEEeeCC---------hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006152 451 KIRD------GDVLLTYGS---------SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (658)
Q Consensus 451 ~I~d------gdvILT~g~---------SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds 514 (658)
++.+ .-+|||||| ++++ ++|+.+|+.|+.-+|||+|||||+||.||+ .||....||.|+|+||
T Consensus 145 ~Llq~~~~~~kltVlThCNTGSLATagyGTAL-GVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS 223 (354)
T KOG1468|consen 145 ELLQAVKDKGKLTVLTHCNTGSLATAGYGTAL-GVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDS 223 (354)
T ss_pred HHHHhcCCCCceEEEEeecCCchhhcccchHH-HHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhH
Confidence 7742 358999976 5777 999999999999999999999999999997 9999999999999999
Q ss_pred HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccC
Q 006152 515 AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVP 592 (658)
Q Consensus 515 Av~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~ 592 (658)
|++++|+ +||.|++|||+|..||+.+||||||++|++||||||||||++|...++.....+..+.+|+|+|.|++.+.
T Consensus 224 ~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~ 303 (354)
T KOG1468|consen 224 MVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVT 303 (354)
T ss_pred HHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeec
Confidence 9999999 89999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcc
Q 006152 593 GREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLV 639 (658)
Q Consensus 593 g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssV 639 (658)
|...+ .+..+++.||||+||+||++|||+||||.|+++|...
T Consensus 304 gg~~v-----~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~~ 345 (354)
T KOG1468|consen 304 GGEGV-----RIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEEL 345 (354)
T ss_pred CCcce-----EecCCCCCccCccccCCHHHHHHHHhhhccccChHHh
Confidence 75432 3678899999999999999999999999999999765
No 16
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-53 Score=425.24 Aligned_cols=283 Identities=27% Similarity=0.353 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhc--CCCCCHHHHHHHHH
Q 006152 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI--PISLSESEAKATLH 426 (658)
Q Consensus 349 araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~--~~~~~~~eaKe~L~ 426 (658)
+-++|.+.++.++++... .+...+|...|+...+.|.+.-++++++..+.+-+.+.+..- .+..+.+++|++++
T Consensus 28 a~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~ 103 (313)
T KOG1466|consen 28 AMAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLL 103 (313)
T ss_pred hhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 345566777777776533 246789999999999999999999999988876555554432 23346799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC
Q 006152 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 427 e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI 506 (658)
|..+.|++. ...+++.|+..+..+|.||++|||||||++|..+|..|++++++|+|||+||||..+|..|+++|.+.||
T Consensus 104 erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~I 182 (313)
T KOG1466|consen 104 ERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGI 182 (313)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHHHhcCC
Confidence 999999966 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcc-cccccCCc
Q 006152 507 SCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSI-CSNELGDP 585 (658)
Q Consensus 507 ~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~-~~nElrdp 585 (658)
|||++.|+|++|+|.+||+||||||.|.+||+++|++|||++|++||+.++|||||+|+|||.+.+++++. .+++.+ |
T Consensus 183 PvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~-p 261 (313)
T KOG1466|consen 183 PVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALP-P 261 (313)
T ss_pred CeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCcccccccccC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 333322 2
Q ss_pred ccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchHHHHhhccc
Q 006152 586 DSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSVRSACCLYF 649 (658)
Q Consensus 586 ~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv~~l~~~yf 649 (658)
-+.. . .....+++...||..|||||+|||++|||+|+++|+.|+-+ |+++|+
T Consensus 262 ~~f~---~--------~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdE-LIKlYl 313 (313)
T KOG1466|consen 262 FKFS---R--------PVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDE-LIKLYL 313 (313)
T ss_pred cccC---C--------CCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHH-HHHhhC
Confidence 1111 0 01122467888999999999999999999999999999977 999995
No 17
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-52 Score=425.08 Aligned_cols=306 Identities=25% Similarity=0.358 Sum_probs=280.3
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHH
Q 006152 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (658)
Q Consensus 331 AI~~LG~q~~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~ 410 (658)
.|-.+-..+..+.+.|+.+.|+..+..|+++|.+..|+ ...+|.+.++..++.|..+.|+..+.||.+|++++.++
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~----~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliR 85 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWS----TANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIR 85 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHH
Confidence 55566677889999999999999999999999888775 46799999999999999999999999999999999888
Q ss_pred hcCC----C------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006152 411 KIPI----S------------------------------LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD 456 (658)
Q Consensus 411 ~~~~----~------------------------------~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgd 456 (658)
+... . ....+.|+.+++.|.+.+.| |+..++.|+.++.++|++++
T Consensus 86 eE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehihsnE 164 (353)
T KOG1465|consen 86 EEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIHSNE 164 (353)
T ss_pred HHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhccCc
Confidence 7311 0 01234788999999999999 88999999999999999999
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecC
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aN 536 (658)
+|||+|+|.+|+.||++|.++||+|+|||.|.-|.+||+.|++.|.++||..|+|+|++++.+|++|+|||+|+++|++|
T Consensus 165 viLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~N 244 (353)
T KOG1465|consen 165 VILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLAN 244 (353)
T ss_pred eEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccccccCCcccccccCCccccccCCCccCCCCceecccee
Q 006152 537 GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIY 616 (658)
Q Consensus 537 G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~F 616 (658)
|++....|++++|++||+|.+|||||++.||+|+-++.+....+|++.|+++..+... .....++++||+|
T Consensus 245 Ggl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~---------~~~~~~~v~nP~f 315 (353)
T KOG1465|consen 245 GGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEG---------DPAGRVDVLNPAF 315 (353)
T ss_pred CCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCcccc---------Ccccceeeccccc
Confidence 9999999999999999999999999999999999999999889999999999876431 2335689999999
Q ss_pred eecCCCCccEEEeCCCCcCCCcchHHHHhhcccceE
Q 006152 617 DATPSDYVSLIITDYGMVSHTLVSVRSACCLYFHYI 652 (658)
Q Consensus 617 DvTPpeLIT~IITE~Gii~PssVpv~~l~~~yf~~~ 652 (658)
||+||||||+|||+.|.+.|+.| ++|..+|||-.
T Consensus 316 DyvppeLVtLFIsNtgg~~PSyv--yRl~~d~Yh~~ 349 (353)
T KOG1465|consen 316 DYVPPELVTLFISNTGGVAPSYV--YRLMEDLYHPQ 349 (353)
T ss_pred ccCChhheeEEEecCCCCChHHH--HHHHHHhcChh
Confidence 99999999999999999999998 89999999853
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=5.2e-50 Score=409.90 Aligned_cols=247 Identities=21% Similarity=0.266 Sum_probs=197.2
Q ss_pred hcccccchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCCCHH
Q 006152 340 LSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSES 419 (658)
Q Consensus 340 ~~~~I~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~ 419 (658)
.+.+-+|+...++-+|..++ |-. .+ ...++.|.+.||-+.-+.|..++++..- +...+
T Consensus 7 ~~d~~~Gs~~~~~~~l~~l~----~~~--------~~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~~ 64 (253)
T PRK06372 7 LSDNASGSADVAFKIISFFS----HND--------ID-----ENIIKDLKNYFFGMGLVRNVCDSIISGP-----NLRPK 64 (253)
T ss_pred hcCccccHHHHHHHHHHHHh----ccc--------hh-----hhHHHHHHHhCcchHHHHHHHHHHHccC-----cCCHH
Confidence 46677888877666555554 211 11 1256678889997777777777665321 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH
Q 006152 420 EAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR 499 (658)
Q Consensus 420 eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~ 499 (658)
+.++. +..+++.|+++|.++| +|++|||||+|++|+.+|..+ ++.|+|||+||||++||+.|++
T Consensus 65 ~~~~~------------~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a~ 128 (253)
T PRK06372 65 NLKLG------------IEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSS---EKIKSVYILESRPMLEGIDMAK 128 (253)
T ss_pred HHHHH------------HHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhc---CCCCEEEEecCCCchHHHHHHH
Confidence 33221 3357788999999999 779999999999999988664 3458999999999999999999
Q ss_pred HHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCCcccc
Q 006152 500 RLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICS 579 (658)
Q Consensus 500 eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~ 579 (658)
+|.+.||+||||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+|||||||++|||+++++.+....
T Consensus 129 ~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~ 208 (253)
T PRK06372 129 LLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPN 208 (253)
T ss_pred HHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876554311
Q ss_pred cccCCcccccccCCccccccCCCccCCCCceeccceeeecCCCCccEEEeCCCCcCCCcchH
Q 006152 580 NELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVSHTLVSV 641 (658)
Q Consensus 580 nElrdp~Ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIT~IITE~Gii~PssVpv 641 (658)
.+.. ....| .++++++||+||+||++|||+||||.|+++|++||+
T Consensus 209 ~~~~---------------~~~~~--~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~~ 253 (253)
T PRK06372 209 FKNH---------------PCSEW--NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVNI 253 (253)
T ss_pred cccc---------------ccccC--CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCCC
Confidence 0000 01123 357899999999999999999999999999999984
No 19
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.53 E-value=0.0013 Score=67.48 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe-eEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHH
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~-f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~ 518 (658)
..++|++.|+++|++|++|. .|.||++..+++...+..+. +++.++-+ ....+..|.+.||++..+.+
T Consensus 6 ~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvVt~-----S~~~a~~l~~~gi~v~~l~~----- 74 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGVPT-----SEASTELAKELGIPLFDLNE----- 74 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEECC-----cHHHHHHHHhCCCeEEcHHH-----
Confidence 34578999999999999974 56666665667766543211 22333222 23445666778988652211
Q ss_pred HhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCCeEeecccccccccc
Q 006152 519 IIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 519 ~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~l--Al~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
+.++|..|.|||.|-.+++++---|-..+ -++|+.-+ -+++++...||.++.
T Consensus 75 -~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~l 128 (220)
T PRK00702 75 -VDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVL 128 (220)
T ss_pred -CCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhc
Confidence 23689999999999999887777554444 45555544 589999999998764
No 20
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.35 E-value=0.0024 Score=65.46 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=79.1
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC--eeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHH
Q 006152 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~ 519 (658)
++|++.|+++|++|++|.. +.|+++..+++...+..+ .+.+.|+-+ +...+.+|.+.||++..+ .-
T Consensus 3 ~~IA~~A~~~I~~g~~I~l-dsGST~~~~~~~L~~~~~~~~l~itvVt~-----S~~~a~~l~~~gi~v~~l------~~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVGL-GTGSTVAYFIEALGERVKQEGLDIVGVPT-----SKQTAELARELGIPLSSL------DE 70 (218)
T ss_pred HHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhhccCCCEEEEeC-----CHHHHHHHHHCCCCEEcH------hH
Confidence 4688999999999999764 555555566666654322 123332221 234557777889987521 11
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH---HHHhhCCCCeEeecccccccccccCCccccccc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA---MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lA---l~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nEl 582 (658)
+.++|..|.|||.|-.|++++ |-|.-.+. ++| ....-++++|...||.++.- ...++.|.
T Consensus 71 ~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia-~~A~~~i~l~D~sK~~~~lg-~~plPvEV 133 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVA-SASKRFIVIADESKLVDKLG-KFPLPVEV 133 (218)
T ss_pred CCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHH-HhhCcEEEEEEchhhhcccC-CCCccEEE
Confidence 236999999999999999885 44432221 222 23347899999999987543 22344553
No 21
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.24 E-value=0.0026 Score=66.09 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEE-------
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (658)
..+.|++.|+.+|.+|++|.--+.|++. .+...... +.++|+. - +...+..|.+ .++.+.++
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifld~GsT~~-~la~~L~~--~~ltVvT-n------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVINCGSTAF-LLGRELCG--KPVQIIT-N------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcHHHH-HHHHHhCC--CCeEEEe-C------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 3467999999999999999877777765 45555432 3455542 2 2345566653 34443322
Q ss_pred ----cchHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccccc
Q 006152 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 512 ----~DsAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.... ...|. .+|+.|+||++|-.+|-.........+--.+-....-+|++|++.||...
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~ 213 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGER 213 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCce
Confidence 1122 23444 68999999999987775544544444444444556778999999999743
No 22
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.24 E-value=0.0044 Score=64.56 Aligned_cols=123 Identities=14% Similarity=0.202 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CC-CcEEEEc-----
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG-LSCTYTH----- 512 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~G-I~vT~I~----- 512 (658)
..++|++.|+.+|.+|++|+-=+.|++. .+.+.... ...++|+. -+...+.+|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfld~GtT~~-~la~~L~~-~~~ltVvT-------nsl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSIILDAGSTVL-QMVPLLSR-FNNITVMT-------NSLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhcc-CCCeEEEE-------CCHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 3467999999999999999865555554 55555532 23455553 23445667765 33 4554331
Q ss_pred --chHHHH----Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccccc
Q 006152 513 --INAISY----IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 513 --DsAv~~----~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.+.++. .++ .+|+.|+||++|-.++++...--...+--++-....-+|++|+..||...
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~ 214 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRK 214 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCc
Confidence 122222 223 69999999999998876654332344444445568888999999999743
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.17 E-value=0.0087 Score=58.15 Aligned_cols=123 Identities=17% Similarity=0.266 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCcEEEE-----c-
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT-----H- 512 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I-----~- 512 (658)
..++|++.|+++|++|++|.-=+.|++. .+.+...+ .++++|+- - ....+.+|.+. ++.+.++ .
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifld~GtT~~-~la~~L~~-~~~ltVvT-n------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFLDSGTTTL-ELAKYLPD-KKNLTVVT-N------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECchHHH-HHHHHhhc-CCceEEEE-C------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 3467999999999999998876666654 55555542 33555552 2 23456677665 3443322 1
Q ss_pred -ch----HHHHHhh--hccEEEEcceeEecC-CCeecccchHHHHHHHhhCCCCeEeeccccccccc
Q 006152 513 -IN----AISYIIH--EVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 513 -Ds----Av~~~M~--~Vd~VlvGAdaV~aN-G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.+ ..-..|+ ++|+.|+|+++|-.+ |-......-..+--..-.+.--+|++|++.||...
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 11 1112222 799999999999985 55556666666666666677789999999999653
No 24
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.13 E-value=0.0037 Score=63.65 Aligned_cols=126 Identities=19% Similarity=0.125 Sum_probs=79.2
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHH
Q 006152 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~ 517 (658)
++|++.|+++|.+|++|.- +.|+++..+++...+.. +.++|+ +-| ...+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~l-dsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIGL-GTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEEE-CchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 4689999999999998764 55555546666664432 244544 222 234456666788765544
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeEeecccccccccccCCccccccc
Q 006152 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (658)
Q Consensus 518 ~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nEl 582 (658)
---++|+.|+|||.|-.++.+..--|-+.+-- +......-+|++++..||..+.- ...++.|.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~-~~~lPvEV 133 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLG-EFPLPVEV 133 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCC-CCCeeEEE
Confidence 11269999999999998876554444433331 22234567899999999987653 12344453
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.08 E-value=0.0067 Score=63.71 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEEc-------
Q 006152 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~------- 512 (658)
.+.|++.|+++|.+|++|+-=+.|++. .+++... ..+.++||.- +...+..|.. .++.+.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifld~GtT~~-~la~~L~-~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVILDSGTTTF-EIARLMR-KHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEECCchHHH-HHHHhcC-cCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 357999999999999999876666654 4555442 2345666642 2345566764 466654331
Q ss_pred chHH----HHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeEeecccccccc
Q 006152 513 INAI----SYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 513 DsAv----~~~M~--~Vd~VlvGAdaV~aNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
.+.+ -..+. .+|+.|+||++|-.++++.. -.--..+--++-...--+|++|+..||..
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNR 228 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCC
Confidence 1112 22233 69999999999987766543 44445555555556677799999999964
No 26
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.03 E-value=0.0091 Score=62.14 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEE-------
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (658)
..++|++.|+++|++|++|+--+.|++. .+..... ..+.++|+- - +...+..|.. .++.+.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIflD~GtT~~-~la~~L~-~~~~ltVvT-N------sl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFIDIGTTPE-AVAHALL-NHSNLRIVT-N------NLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcHHHH-HHHHHhc-CCCCcEEEE-C------cHHHHHHHhhCCCCEEEEECCEEecC
Confidence 3467999999999999999977776664 4455443 233455552 2 3345566653 44554332
Q ss_pred cchHHHH----Hhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCCeEeecccccccc
Q 006152 512 HINAISY----IIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 512 ~DsAv~~----~M~--~Vd~VlvGAdaV~aNG~V-vNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
..+.+|. .++ .+|+.|+||+.|-.++++ .+-..-+.+--.+-....-+|++|++.||..
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~ 213 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGR 213 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCC
Confidence 1223332 222 699999999999876544 5555555565555556667899999999964
No 27
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.06 Score=56.15 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CcEEE--------
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTY-------- 510 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~-------- 510 (658)
..+.|++.|+++|++|++|+--+.|++. .+..... ....++|+. -+...+..|.... +.+.+
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~GTT~~-~la~~L~-~~~~ltviT-------Nsl~ia~~l~~~~~~~vi~~GG~~~~~ 147 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDAGTTTL-ALARALP-DDNNLTVIT-------NSLNIAAALLEKPNIEVILLGGTVRKK 147 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcHHH-HHHHHhC-cCCCeEEEe-------CCHHHHHHHHhCCCCeEEEeCcEEEcC
Confidence 3457999999999999999877777765 4444443 233366663 2445566666553 33311
Q ss_pred ---EcchHHHHHhh--hccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCeEeeccccccccc
Q 006152 511 ---THINAISYIIH--EVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 511 ---I~DsAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKi-GT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
+.....-..++ .+|+.|+|+++|-.++++...- .-+.+.-.+-....-+|+++.+.||...
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 148 SGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 11122223333 7999999999999887666544 4444555555667788999999999754
No 28
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=96.48 E-value=0.085 Score=54.62 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEE-------
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I------- 511 (658)
..+.|++.|+++|++||+|.-=+.|++. .+.+...+ +.++|+. -+...+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifld~GtT~~-~l~~~L~~--~~ltVvT-------Ns~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIALDASSTCW-YLARQLPD--INIQVFT-------NSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCcHHHH-HHHHhhCC--CCeEEEe-------CCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 3467999999999999998866665554 55555532 2455553 12344556653 45554322
Q ss_pred ----cchHHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeEeecccccccc
Q 006152 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 512 ----~DsAv~~~M~--~Vd~VlvGAdaV~aNG~VvN-KiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
.....-..++ ++|+.|+||++|..+|++.. -.=.+.+--.+-....-+|++|++.||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 1111222233 69999999999987655553 44445555555566777899999999974
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=96.11 E-value=0.081 Score=55.02 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEEc-------
Q 006152 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH------- 512 (658)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~------- 512 (658)
.++|++.|+++|.+|++|+.=+.|+++ .+.+... ..+.++|+- - +...+.+|.+ .++.+.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~GtT~~-~la~~L~-~~~~ltvvT-n------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDCGTTTP-WIIEAID-NELPFTAVC-Y------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCccHH-HHHHhcC-CCCCeEEEE-C------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 467999999999999999988777776 4444442 222455543 2 2334566654 344443321
Q ss_pred chHHH----HHhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCCeEeecccccccc
Q 006152 513 INAIS----YIIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHE 570 (658)
Q Consensus 513 DsAv~----~~M~--~Vd~VlvGAdaV~aNG~V-vNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~ 570 (658)
.+.++ ..+. .+|+.|+||++|-..+++ ..-.--+.+.-+.-....-+|++|+..||..
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 11111 1222 699999999999866554 4444445554444455667899999999964
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=95.08 E-value=0.38 Score=50.94 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe--eE-EEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHH
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ--FR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~--f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~ 519 (658)
..+..|+++|++|.+ +=.|.++++..+|++..+..+. ++ +.++-|. .+....+.+.||+.+-+.+
T Consensus 38 ~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~------ 105 (264)
T PLN02384 38 IAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS------ 105 (264)
T ss_pred HHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc------
Confidence 345667889999876 6778888887777776654332 33 5555442 2334566688999776654
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeEeecccccccccc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
..++|..|=|||-|-.|+.++=-=|...+- ++|.. ..-|+++++..|+.++.
T Consensus 106 v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~-A~~~IiI~DesK~V~~L 159 (264)
T PLN02384 106 HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGA-CKKFVVIVDESKLVKHI 159 (264)
T ss_pred CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHh-cCeEEEEEeCcceeccc
Confidence 347999999999999998777666644322 23332 23689999999998753
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=94.04 E-value=0.92 Score=47.14 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=79.1
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC--eeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHH
Q 006152 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk--~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~ 519 (658)
+..++.|+++|++|.+ +=.|.++++..+|+...+..+ .+++.++-|. .+....+.+.||+..-+.+.
T Consensus 9 ~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~~----- 77 (228)
T PRK13978 9 LMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEINDV----- 77 (228)
T ss_pred HHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhhC-----
Confidence 3456778899999876 778888998777776654322 2455555332 22334566789997665442
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCCeEeecccccccccc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lA--l~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
.++|..|=|||-|-.|+.++--=|-+.+= ++|.. ..-|+|++...|+.++.
T Consensus 78 -~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~-A~~~iii~D~sK~v~~L 130 (228)
T PRK13978 78 -DHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEM-ASRFVVVVDETKIVQYL 130 (228)
T ss_pred -CceeEEEecCceecCCccEEecCcHHHHHHHHHHHh-cCcEEEEEeCcceeccc
Confidence 47999999999999998877555533211 22222 34789999999998753
No 32
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=90.68 E-value=1.4 Score=49.00 Aligned_cols=116 Identities=23% Similarity=0.269 Sum_probs=76.1
Q ss_pred HHHHHHHHHH----HhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE----
Q 006152 440 ADRVIVKHAV----TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT---- 511 (658)
Q Consensus 440 a~~~Ia~~a~----~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I---- 511 (658)
|+++|+++.. .+|...|++||-|++.+++.+|......|.++ +--||.+-=.. ..-.-.||.|.+.
T Consensus 108 AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNI----LlPrPGfp~Y~--~~a~~~~lEVR~ydlLP 181 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANI----LLPRPGFPLYD--TRAIYSGLEVRYYDLLP 181 (447)
T ss_pred HHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCce----ecCCCCCchHH--HhhhhcCceeEeecccC
Confidence 4555666533 35677899999999999998888776544432 23577653211 1122357777663
Q ss_pred ------cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 512 ------HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 512 ------~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
....+-++.-+=++.++=-.==-.+|+|+++-=--.+|-+|+.++++|+.
T Consensus 182 e~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 182 EKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 34566666655444433222234679999999999999999999999863
No 33
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=89.24 E-value=0.95 Score=46.85 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccCCCE-EEeeCChHHHHHHHHHHHHcCCe--e----EEEEeCCCCCchHHHHHHHHHhCC-CcEEE-
Q 006152 440 ADRVIVKHAVTKIRDGDV-LLTYGSSSAVEMILQHAHELGKQ--F----RVVIVDSRPKHEGKLLLRRLVRKG-LSCTY- 510 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdv-ILT~g~SsaV~~vL~~A~e~gk~--f----~ViV~ESRP~~EG~~La~eL~~~G-I~vT~- 510 (658)
.++.|+..+++.|+||+. -|=+|--+.|..++.+ |.+ | -++-+..-|.. .+--..|...| -+|+.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~----~~~~~~~seng~Lg~g~~p~~--~~~d~~linaG~~~vt~~ 80 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPE----GMNVLLQSENGLLGVGPAPLP--GEEDADLINAGKQPVTAL 80 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhccc----ccceEEecCceeEEecCCCCC--CCCCcchhhCCCceeEec
Confidence 456788888999999974 4666766777555542 111 1 11222333322 11123444444 56666
Q ss_pred ----EcchHHHHHhh---hccEEEEcceeEecCCCeeccc
Q 006152 511 ----THINAISYIIH---EVTRVFLGASSVLSNGTVCSRV 543 (658)
Q Consensus 511 ----I~DsAv~~~M~---~Vd~VlvGAdaV~aNG~VvNKi 543 (658)
+.|++.++.|- ++|.-||||--|-.+|++.|-+
T Consensus 81 pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~ 120 (225)
T COG2057 81 PGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWM 120 (225)
T ss_pred CCceEEchHHHHHHHhCCceEEEEecceeecccCceeeee
Confidence 67888887774 7999999999999999999964
No 34
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.76 E-value=6.1 Score=41.13 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHh
Q 006152 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M 520 (658)
+..+..|++++.+ ..|+=.|.+||+..+|+.+.+..+ .+.+..+-|. .+....|.+.||+++.+.+ .
T Consensus 8 ~~aa~~A~~~v~~-gmviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~------~ 75 (227)
T COG0120 8 KAAAKAALEYVKD-GMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE------V 75 (227)
T ss_pred HHHHHHHHHHhcC-CCEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc------c
Confidence 3456678899988 456678888888888888763211 1455554442 3445677889998876654 2
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCCeEeecccccccccc
Q 006152 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 521 ~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl-~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
..+|..|=|||-|-.++.++--=|.+.+=- +-.+...-|+|+++..|+.++.
T Consensus 76 ~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~L 128 (227)
T COG0120 76 DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVL 128 (227)
T ss_pred CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhc
Confidence 359999999999999988776666554321 2233456789999999997654
No 35
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.92 E-value=3 Score=37.14 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=62.3
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh-----hccEEEEccee
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLGASS 532 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~-----~Vd~VlvGAda 532 (658)
|+..|++..-..+++.+.+.+ ..|+++|..|.. ...+.+.|+++.+- |..=-..++ +++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIYG-DATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEES--TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhcccccccc-cchhhhHHhhcCccccCEEEEccC-
Confidence 577899887767777776633 788888877643 67888999876654 333233333 6788877765
Q ss_pred EecCCCeecccchHHHHHHHhh-CC-CCeEeecccc
Q 006152 533 VLSNGTVCSRVGTACVAMVAYG-FH-IPVLVCCEAY 566 (658)
Q Consensus 533 V~aNG~VvNKiGT~~lAl~Ak~-~~-VPVyV~aety 566 (658)
+...+..+++.||. +. +++++.+...
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 66788899999998 33 5666655543
No 36
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=82.71 E-value=22 Score=39.96 Aligned_cols=141 Identities=17% Similarity=0.222 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------EEEeeCChHHHHHHHHHHHHcCCeeEEEEe-CCCCCch
Q 006152 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGD---------VLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHE 493 (658)
Q Consensus 424 ~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgd---------vILT~g~SsaV~~vL~~A~e~gk~f~ViV~-ESRP~~E 493 (658)
.+.++.+.|... +..-+.+....+.+.+.+-+ .|..+.-...++....=+..+-+. +|.++ +|- +.-
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~sm-yg~ 259 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSM-YGN 259 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecc-cCC
Confidence 455666666655 55566666777777776521 233333344554443333222233 34443 443 333
Q ss_pred HHHH----HHHHHhCCCcEEEEc--chHHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 494 GKLL----LRRLVRKGLSCTYTH--INAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 494 G~~L----a~eL~~~GI~vT~I~--DsAv~~~M~---~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
-..| +..|.+.|+.+.++- ++..+.++. +++.+++|.-.+ |++..-++++..--+.+..++-...++-+
T Consensus 260 T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 260 TEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEe
Confidence 3334 467889999998875 455788887 689999999887 67899999999999999988766677777
Q ss_pred ccccc
Q 006152 565 AYKFH 569 (658)
Q Consensus 565 tyKf~ 569 (658)
+|-..
T Consensus 338 S~GW~ 342 (388)
T COG0426 338 SYGWS 342 (388)
T ss_pred ccCCC
Confidence 77554
No 37
>PRK04311 selenocysteine synthase; Provisional
Probab=80.80 E-value=29 Score=39.61 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCC--chHHHHHHHHHhCCCcEEEEcc------hHHH
Q 006152 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--HEGKLLLRRLVRKGLSCTYTHI------NAIS 517 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~--~EG~~La~eL~~~GI~vT~I~D------sAv~ 517 (658)
+..++++...+.++|-+++.++..+| .+...| -+|+|.+..-+ ....++.+.+...|+.+.++.. ..+.
T Consensus 134 ~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle 210 (464)
T PRK04311 134 ALLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYE 210 (464)
T ss_pred HHHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHH
Confidence 33444554346666666666675444 454333 47888654222 1223444667788988777642 1223
Q ss_pred HHhh-hccEEEEcceeEe-cCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 518 YIIH-EVTRVFLGASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 518 ~~M~-~Vd~VlvGAdaV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..+. +...|++-...-+ -.| .....---.++-+||.||+|++|=+
T Consensus 211 ~aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 211 QAINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred HhcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 3343 3333333222111 112 1122345668889999999999855
No 38
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=80.64 E-value=18 Score=39.47 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCC-------------eeEEE
Q 006152 418 ESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-------------QFRVV 484 (658)
Q Consensus 418 ~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk-------------~f~Vi 484 (658)
.++..+.+.+.++.|... ....+.+.+..++++.-..+++|-|.+.++..+|..+.+.|. ...|+
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 455555555555544432 122334455555555444678888888888777776665554 23677
Q ss_pred EeCCCCCchHH--HHHHHHHhCCCcEEEEc------chHHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006152 485 IVDSRPKHEGK--LLLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 485 V~ESRP~~EG~--~La~eL~~~GI~vT~I~------DsAv~~~M~-~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~ 555 (658)
+ .+|.+... ....-+...|....++. ...+...+. +...+++-..--...|.+.. + -.++-+||.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHc
Confidence 6 34544321 12233444676555542 223333433 33323210000011233333 2 4578899999
Q ss_pred CCCeEe
Q 006152 556 HIPVLV 561 (658)
Q Consensus 556 ~VPVyV 561 (658)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999987
No 39
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=80.52 E-value=3.8 Score=43.17 Aligned_cols=107 Identities=23% Similarity=0.227 Sum_probs=72.5
Q ss_pred EeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC----cEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 459 LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL----SCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 459 LT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI----~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
+|=|++-+=..+++.+.++|...+|.+++-++...- ...+...++ .+-+.....+..+|+.||.||-=|..+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 344454443455667777786667777775554422 223333343 3344444678888999999998888777
Q ss_pred cCCC-------eecccchHHHHHHHhhCCCCeEeecccccc
Q 006152 535 SNGT-------VCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 535 aNG~-------VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
..|. -+|--||-.|--+|+.++|+.+|.+-+.--
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 7662 346699999999999999999998877643
No 40
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=80.31 E-value=26 Score=30.18 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCeeEEEEeCCCCCc-----------hHHHHHHHHH----hCCCcEEEE--cchHHHHHhh-----hc
Q 006152 466 AVEMILQHAHELGKQFRVVIVDSRPKH-----------EGKLLLRRLV----RKGLSCTYT--HINAISYIIH-----EV 523 (658)
Q Consensus 466 aV~~vL~~A~e~gk~f~ViV~ESRP~~-----------EG~~La~eL~----~~GI~vT~I--~DsAv~~~M~-----~V 523 (658)
++...+..|...+..+.++.+...+.. +..+....+. ..|+++++. ..+....++. ++
T Consensus 15 ~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 94 (130)
T cd00293 15 ALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGA 94 (130)
T ss_pred HHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCC
Confidence 444445555556777776655443322 3444443333 368887554 3332333333 57
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeEee
Q 006152 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|.|++|+..- +.... ..|+. .--+.+..++||+++
T Consensus 95 dlvvig~~~~---~~~~~~~~~~~-~~~ll~~~~~pvliv 130 (130)
T cd00293 95 DLIVMGSRGR---SGLRRLLLGSV-AERVLRHAPCPVLVV 130 (130)
T ss_pred CEEEEcCCCC---CccceeeeccH-HHHHHhCCCCCEEeC
Confidence 9999998653 22222 23333 334456688998874
No 41
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=80.09 E-value=73 Score=36.39 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC-C-CchHHHHHHHHHhCCCcEEEEcc------hHHHH
Q 006152 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-P-KHEGKLLLRRLVRKGLSCTYTHI------NAISY 518 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR-P-~~EG~~La~eL~~~GI~vT~I~D------sAv~~ 518 (658)
..++++...+.+++-++..++..+| .++..| -+|+|.+.. + +....++.+.+...|+.+.++.. ..+..
T Consensus 130 ~lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~ 206 (454)
T TIGR00474 130 LLCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYED 206 (454)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHH
Confidence 3444554345666555555664445 455434 478887643 2 22334555667788999888832 12222
Q ss_pred Hhh-hccEEEEcceeEec-CCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 519 IIH-EVTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 519 ~M~-~Vd~VlvGAdaV~a-NG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+. +...|++-....+. +|. ....-...++-+||+||++++|=+
T Consensus 207 aI~~~T~lv~~~h~sN~~~~G~-~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 207 AITENTALLLKVHTSNYRIVGF-TEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred hcCcCCEEEEEEccCcccccCC-CCCCCHHHHHHHHHHcCCeEEEEC
Confidence 333 33344433222221 231 123445678889999999999853
No 42
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=78.32 E-value=32 Score=39.11 Aligned_cols=50 Identities=6% Similarity=0.017 Sum_probs=39.3
Q ss_pred hccEEEEcce-eEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccc
Q 006152 522 EVTRVFLGAS-SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 522 ~Vd~VlvGAd-aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
.+|..|.||+ +|..+|++++-.|....-+++ ..-.-+++++...|+.+++
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~ 231 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTF 231 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCH
Confidence 6999999999 999999999999888855554 3334455678888887764
No 43
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=77.34 E-value=15 Score=38.95 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=82.0
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHH---HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHH
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A---~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~ 519 (658)
.-+.++.+....+-.|+=.|.+++|...+... +.++..-+|+++-+ +.+-+.++.+.||++.+..+.
T Consensus 30 ~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPt-----s~~s~q~~~~~gi~l~~~d~h----- 99 (261)
T KOG3075|consen 30 LAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPT-----SFRSAQLALEYGIPLSDLDSH----- 99 (261)
T ss_pred HHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEeccc-----chhhHHHHHhcCCccccCCCC-----
Confidence 34556666665566777888887766655555 45677677777654 344567888999999887764
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHH-HHHHhhCCCCeEeeccccccccc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~l-Al~Ak~~~VPVyV~aetyKf~~~ 571 (658)
..+|+-|=|||-|-.|..++---|-... -.+=--..+.|||++...|+...
T Consensus 100 -p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~ 151 (261)
T KOG3075|consen 100 -PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKG 151 (261)
T ss_pred -ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchh
Confidence 3799999999999999987755554322 12222345678999999999843
No 44
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=72.75 E-value=41 Score=30.87 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=37.2
Q ss_pred HHhCCCcEEEEc---chHHHHHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHhhCC--CCeEeec
Q 006152 501 LVRKGLSCTYTH---INAISYIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFH--IPVLVCC 563 (658)
Q Consensus 501 L~~~GI~vT~I~---DsAv~~~M~-----~Vd~VlvGAdaV~aNG~VvNK-iGT~~lAl~Ak~~~--VPVyV~a 563 (658)
|...|+++..+. ++...-+++ ++|+|++|++.- |.+... .|+....-+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 345777765443 243444443 689999999864 333222 35444455678888 9999985
No 45
>PRK05973 replicative DNA helicase; Provisional
Probab=71.46 E-value=91 Score=32.65 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=59.1
Q ss_pred ccCCCEEEeeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcE-------EEEc-c-hHHH
Q 006152 452 IRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC-------TYTH-I-NAIS 517 (658)
Q Consensus 452 I~dgdvILT~g~S-----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~v-------T~I~-D-sAv~ 517 (658)
+..|+.+|..|.+ .....++.++.++|.+.-.|-.|-.| ..+..++...|++. .+.. | -...
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCHH
Confidence 4567888888663 33446667676667654444455443 24455566666642 1111 1 1122
Q ss_pred HHhh------hccEEEEcceeEecCCCeecccch--HHHHHHHhhCCCCeEeecccccc
Q 006152 518 YIIH------EVTRVFLGASSVLSNGTVCSRVGT--ACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 518 ~~M~------~Vd~VlvGAdaV~aNG~VvNKiGT--~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
+++. +.+.|||=-=..+..+.--...+. ..+-..||++|+|++++++...-
T Consensus 137 ~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 3332 356666632111211110012222 33567899999999999886543
No 46
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=70.70 E-value=53 Score=29.51 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-----hHHHHHhh--hccE
Q 006152 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVTR 525 (658)
Q Consensus 455 gdvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-----sAv~~~M~--~Vd~ 525 (658)
|.++++.+.+. -+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+...++ ++|.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~ 70 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQL 70 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEE
Confidence 34566666543 23344455444 4689998663 56788899999887632 34444444 7999
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccc
Q 006152 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
||--.+ +.- ...-.|.+=-+|-.|+||++-..++
T Consensus 71 vIn~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~t 104 (110)
T cd01424 71 VINTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLDT 104 (110)
T ss_pred EEECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHHH
Confidence 987542 221 1234578888999999999965443
No 47
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=70.65 E-value=62 Score=31.64 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhc--cCCCEEEeeCCh-----HHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHHHH-HHHHHhCCCc
Q 006152 437 IILADRVIVKHAVTKI--RDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKH-EGKLL-LRRLVRKGLS 507 (658)
Q Consensus 437 i~~a~~~Ia~~a~~~I--~dgdvILT~g~S-----saV~~vL~~A~e~gk~f~ViV~ESRP~~-EG~~L-a~eL~~~GI~ 507 (658)
++.|...++++...++ ..+..|+.+|-+ ..+ .+-+++++.|.+..|+++.-.... +-.+. ...+.+.|++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl-~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGL-VAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHH-HHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHH-HHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 3457778888888888 667777777542 233 345777788988888766543333 33333 3677888987
Q ss_pred EEEE-cchHHHHHhhhccEEEEcceeEecCCCeecccchHH-HHHHHhhCCCCeEe
Q 006152 508 CTYT-HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC-VAMVAYGFHIPVLV 561 (658)
Q Consensus 508 vT~I-~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~-lAl~Ak~~~VPVyV 561 (658)
+... .+......+..+|.|| |+|+-.|---.--|.+. +.-.+++++.|++-
T Consensus 84 ~~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 84 IIELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp EESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred EeeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 7653 4455556666888887 67777764333333333 33355666676543
No 48
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=70.34 E-value=48 Score=37.43 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=53.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
..|+|-+-+.++..+|......|. +|++... .+.| ..+. +.|.+.|+.++++... .+-..+. +...|++-
T Consensus 81 ~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e 156 (433)
T PRK08134 81 GAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE 156 (433)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 456655555666555555544343 5666533 2333 2333 5677789988888532 3444443 34444332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+......+.. --.|+-+||+||++|+|=
T Consensus 157 --~~~np~g~v~D--i~~I~~la~~~gi~livD 185 (433)
T PRK08134 157 --TLGNPGLEVLD--IPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred --CCCcccCcccC--HHHHHHHHHHcCCEEEEE
Confidence 22111111111 245888999999998873
No 49
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=70.29 E-value=69 Score=33.31 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 491 ~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|...
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 3445667789999999999999999999988999999753
No 50
>PRK07582 cystathionine gamma-lyase; Validated
Probab=70.28 E-value=43 Score=36.60 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=56.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHH-HHHhCCCcEEEEcchHHH-HHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHINAIS-YIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~-eL~~~GI~vT~I~DsAv~-~~M~~Vd~VlvGA 530 (658)
..+.|++-+.+.++..+|..... ..-+|++.+ |.+.+. .+++ .|...|+++.++...... .++++++.|++-
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~--~Gd~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLR--PGDTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcC--CCCEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 34667766556666555554443 334677653 555443 4443 467789999998754222 344566666653
Q ss_pred eeEecCCCeecccc----hHHHHHHHhhCCCCeEe
Q 006152 531 SSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~aNG~VvNKiG----T~~lAl~Ak~~~VPVyV 561 (658)
. .-|..| -..++-+|+.+++.++|
T Consensus 140 -~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 1 223333 35677788889986665
No 51
>PLN02651 cysteine desulfurase
Probab=70.18 E-value=67 Score=34.56 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcch--------HHHHHhh-
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~~M~- 521 (658)
.+.+++|-|.+.++..+|..+.. .++.-+|++.+.. +.+... ...|...|+++.++... .+-..+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~--h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTE--HKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccc--cHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677777766665444444322 1233467765432 222211 24456779988887521 2333332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++. ..-...|.+. .+ -.|+-+||.||++|+|
T Consensus 138 ~t~lv~v~-~~~n~tG~~~-~l--~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 138 DTALVSVM-AVNNEIGVIQ-PV--EEIGELCREKKVLFHT 173 (364)
T ss_pred CcEEEEEE-CCCCCceecc-cH--HHHHHHHHHcCCEEEE
Confidence 33344332 1112234332 22 3578889999988876
No 52
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.14 E-value=1.2e+02 Score=30.73 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=24.6
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+.+=|.+|+ |...|..-+ ...++-.||.+|+|+++++.
T Consensus 107 ~~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 107 GHAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 334566654 334454322 45567789999999999876
No 53
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=69.98 E-value=49 Score=30.08 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc------h-HHHHHhh--hccEEEEcceeEecCCCe
Q 006152 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------N-AISYIIH--EVTRVFLGASSVLSNGTV 539 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D------s-Av~~~M~--~Vd~VlvGAdaV~aNG~V 539 (658)
.+.+... ...|++|.+++ .++.|.+.||+|+.+.. . ....+.. ++|+||-=- +|.-
T Consensus 16 ~~a~~l~--~~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~~ 80 (112)
T cd00532 16 DLAPKLS--SDGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPRR 80 (112)
T ss_pred HHHHHHH--HCCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCCc
Confidence 4444444 45689998763 56778899999988632 2 3444444 688887532 3332
Q ss_pred --ecccchHHHHHHHhhCCCCeEeecccccc
Q 006152 540 --CSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 540 --vNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
-.....+.+=-+|-.|+||++....+..|
T Consensus 81 ~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~~ 111 (112)
T cd00532 81 DRCTDEDGTALLRLARLYKIPVTTPNATAMF 111 (112)
T ss_pred ccccCCChHHHHHHHHHcCCCEEECHHHHhh
Confidence 12556788888999999999987665543
No 54
>PRK05414 urocanate hydratase; Provisional
Probab=69.61 E-value=23 Score=41.02 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006152 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~r~L~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|...-+...+.+|+|+.+ ||+..-+-+.++.- +.+++.+|+.+.+.++-+.
T Consensus 215 ~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~~ 294 (556)
T PRK05414 215 KADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPEE 294 (556)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 34567777777777888889999875 89987776655541 1134789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh
Q 006152 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS 464 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S 464 (658)
|.+. +.+.|.+|.. ++-..|..+.-|||+
T Consensus 295 ~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~ 326 (556)
T PRK05414 295 FVKA----AKASMARHVEAMLAFQARGAYVFDYGNN 326 (556)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 8754 5666776654 444678888888875
No 55
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=68.95 E-value=35 Score=36.31 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=60.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEcc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGA 530 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~~M~~Vd~VlvGA 530 (658)
+....+++|.|.+.++.. +..+...| +|++. .|.+.+... .+...|+++..+.| ..+-..+++.+.|++ .
T Consensus 62 ~~~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~ 132 (330)
T TIGR01140 62 LPAASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-C 132 (330)
T ss_pred CChhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-e
Confidence 334578888888777744 45554333 45554 577766543 45678999988874 233334456665555 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-=..-|.++..-.-..++-+|+.|++++++
T Consensus 133 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 133 NPNNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 2212335555544455577788889987664
No 56
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.79 E-value=23 Score=39.91 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
.+..|+.+|.+.+=..+.+.+.+.| ++|.+.|.++......+...|.+.||.+.+-.... ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4678999988754223444455555 47888998876555566788999998775432222 234578887765
No 57
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.57 E-value=34 Score=37.97 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.+.+|+..|.+..=..+.+.+.+.|. .|++.|..+...=.+...+|.+.|+.+ +........+...|.||+++..-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCCC
Confidence 46778888887742234445555564 666666654222233346777778763 32222234556789888876432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.. ..+...|+++|+|++-
T Consensus 80 ~~----------~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 80 LD----------SPPVVQAHKKGIEVIG 97 (450)
T ss_pred CC----------CHHHHHHHHCCCcEEe
Confidence 21 2355667777777764
No 58
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=67.36 E-value=91 Score=33.22 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcC--Ce-eEEEEeCC-CCCchHHHHHHHHHhCCCcEEEEcch--------HHHHHhh
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELG--KQ-FRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~g--k~-f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~~M~ 521 (658)
..++++|-|.+.++..+|......+ +. -+|++.+. .|.+. .....+...|+++.++... .+-..+.
T Consensus 59 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~--~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 59 TEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVL--EPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHH--HHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 3467777666666655555443211 11 35555432 22211 1123455679998887632 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+-+++++=...-...|.+.. --.|+-+|++|+++|+|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEE
Confidence 11222222222223343332 25588889999998876
No 59
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=66.72 E-value=26 Score=40.39 Aligned_cols=88 Identities=19% Similarity=0.393 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHHh-c-------------------CCCCCHHHHHHHHHHHHHH
Q 006152 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAK-I-------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~r~L~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~-~-------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|...-+...+.+|+|+.+ ||+..-+.+.++. + +.+++.+|+.+.+.++-+.
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~ 285 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEA 285 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 34567777888888888899999875 9998777666554 1 1134789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh
Q 006152 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS 464 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S 464 (658)
|.+. +.+.|.+|.. ++-..|..+.-|||+
T Consensus 286 ~~~~----~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~ 317 (545)
T TIGR01228 286 YVKA----AKQSMAKHVRAMLAFQKQGSVTFDYGNN 317 (545)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHH
Confidence 8754 6666777654 444578888888875
No 60
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.67 E-value=66 Score=35.64 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=36.5
Q ss_pred HhccCCCEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006152 450 TKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 450 ~~I~dgdvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (658)
..|+.||+|+..|....+..+.+..... ...-+++|+-. ..-|+.+++.|.+.|+++++|.
T Consensus 200 ~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 200 TVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred cEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 3456677777777776665544433221 12345666655 4456677777777777777763
No 61
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=66.31 E-value=82 Score=34.81 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=52.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
+.|+|-+...++..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.. ..+...+. +...|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 566666666666555555544443 56653 3444433 333 356778999988853 23333333 34444431
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.--...|.+.. --.|+-+||+|+++++|
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALLVV 181 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 11112233321 14567789999998876
No 62
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=66.17 E-value=73 Score=30.99 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHHhccCCCEEEeeCChH--HHHHHHHH-HHHcCCeeEEE----------------EeCCCCCchHHHHHHHHHhCC
Q 006152 445 VKHAVTKIRDGDVLLTYGSSS--AVEMILQH-AHELGKQFRVV----------------IVDSRPKHEGKLLLRRLVRKG 505 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~Ss--aV~~vL~~-A~e~gk~f~Vi----------------V~ESRP~~EG~~La~eL~~~G 505 (658)
.+.+++.|.+...|..+|.+. .+...+.. ...-|+...++ +.-++-..+=.++++.+.+.|
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g 102 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAG 102 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCC
Confidence 344556666667888887653 23233322 22223322211 111222223345668889999
Q ss_pred CcEEEEcchHHHHHhhhccEEEE
Q 006152 506 LSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 506 I~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+++..|+++.-+.+-+.+|.+|.
T Consensus 103 ~~iI~IT~~~~s~la~~ad~~l~ 125 (179)
T cd05005 103 AKVVLITSNPDSPLAKLADVVVV 125 (179)
T ss_pred CeEEEEECCCCCchHHhCCEEEE
Confidence 99999999988888888998775
No 63
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=66.15 E-value=66 Score=33.71 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=51.1
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhh-----
Q 006152 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE----- 522 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~----- 522 (658)
++...+.|++.+.+..+..++..+...| -+|++ ++|.+..... .+...|+++.++.. ..+-.++.+
T Consensus 58 ~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~ 131 (349)
T cd06454 58 FHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRPY 131 (349)
T ss_pred HhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhccC
Confidence 3333355665544555544444443333 34554 3455444332 23457888876632 233444443
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-.++++ ...+....++...+ -.|+-+|++|+++|+|=
T Consensus 132 ~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 132 GKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred CCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEEE
Confidence 223333 22333222233443 45778899999888763
No 64
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.12 E-value=47 Score=33.74 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=60.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.|..||..|.+.+-..-++.+.+.|-.+.|+ ...+. .-..+|.+.| .++++.-.--...+..++.||+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVv--sp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~a---- 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVI--AEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAA---- 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEE--cCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEEC----
Confidence 4678999999987666677777778765555 33332 2234566666 67777643223334556666543
Q ss_pred ecCCCe-ecccchHHHHHHHhhCCCCeEeeccc
Q 006152 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 ~aNG~V-vNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
-|+- +| ..++..|+..++||.++-+.
T Consensus 77 --t~d~~ln----~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 77 --TDDEELN----RRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred --CCCHHHH----HHHHHHHHHcCCEEEECCCc
Confidence 2332 33 36888999999999988543
No 65
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=65.94 E-value=91 Score=34.75 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=53.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcchH---HHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~DsA---v~~~M~-~Vd~VlvG 529 (658)
+.|++-+.+.++..+|......| -+|++.+. .+.+ ..+. ..+...|+.++++...- +...+. +...|++-
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~e 162 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFE 162 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 56666666666766665554333 36776653 2322 2333 45677899999886432 333332 34444331
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-.-..|.++. --.|+-+||+|+++|+|
T Consensus 163 -sp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 163 -TPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred -CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 11112333332 34577789999988776
No 66
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=65.39 E-value=2e+02 Score=31.29 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEe-CCCCCchHH
Q 006152 419 SEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD--GDVLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGK 495 (658)
Q Consensus 419 ~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~d--gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~-ESRP~~EG~ 495 (658)
.+.++..++.++.|-- -....+.+-+..+++..- ..+++|-|...++..++..... ..-+|++. -.+|.+--.
T Consensus 36 ~~~~~~~~~~~~~~~g--~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~--~gd~Vli~~~d~p~~~s~ 111 (346)
T TIGR03576 36 FKIDEEDLELLETYVG--PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP--PGRKVVHYLPEKPAHPSI 111 (346)
T ss_pred hhHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC--CCCEEEECCCCCCCchhH
Confidence 4555666666666510 011223344444455532 4566666666677666655443 33456553 235554332
Q ss_pred HHHHHHHhCCCcEEEEcch-HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 496 LLLRRLVRKGLSCTYTHIN-AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 496 ~La~eL~~~GI~vT~I~Ds-Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. ..+.-.|.++....|- .+.. ..+..+|++ ..-..+|+++.+.=-..++-+|+.|++.|+|
T Consensus 112 ~--~~~~l~ga~~~~~~~l~~l~~-~~~~~lIii--tg~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 112 P--RSCKLAGAEYFESDELSELKK-IDGTSLVVI--TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred H--HHHHHcCCEEeccCCHHHHhh-CcCceEEEE--ECCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 2 2223345554333221 1111 123344554 1113345555544444566678889987664
No 67
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.38 E-value=51 Score=37.29 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=51.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HH-HHHHHhCCCcEEEEcc----hHHHHHhhhccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~L-a~eL~~~GI~vT~I~D----sAv~~~M~~Vd~VlvG 529 (658)
..|++-+..+++..+|......| -+|++... .+.|- .+ ...|...||.++++.| ..+...+..=+++|+
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~G--d~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~- 160 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAG--DHIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF- 160 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-
Confidence 44555555555555554443333 35666532 33332 22 3566778888888852 223333432233333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+....+-..+.. --.|+-+||++|++|+|=
T Consensus 161 ~e~~~Np~~~v~d--i~~I~~la~~~gi~livD 191 (437)
T PRK05613 161 GETFANPQADVLD--IPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred EECCCCCCCcccC--HHHHHHHHHHcCCeEEEE
Confidence 2333222112233 445778899999998773
No 68
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=65.06 E-value=1e+02 Score=33.19 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcch--------HHHHHhh-h
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH-E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds--------Av~~~M~-~ 522 (658)
...+++|.|.+..+..+|..+.. ....-+|++.+. .+.+... ...+...|+.+.++... .+-..+. +
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34678887777777665654432 111223444332 2223222 34566689998888521 1222232 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+|++ ...-...|. +..+ -.|+-+|++|+++++|
T Consensus 137 ~~lv~i-~~~~n~tG~-~~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 137 TALVSV-MWANNETGT-IFPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred cEEEEE-EcccCCeee-cccH--HHHHHHHHHcCCEEEE
Confidence 333332 222222333 3333 3588899999988876
No 69
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=65.04 E-value=87 Score=33.48 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=44.5
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhC-CCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006152 478 GKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~ 556 (658)
..+++++++-..|. .-.++...+.+. |+.+.++. ..+..+|..+|.+|+-+ |+..+ =|-.+|
T Consensus 218 ~~~~~~ii~~~~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl~v~~s-------------G~~~l--Ea~a~G 280 (380)
T PRK00025 218 YPDLRFVLPLVNPK-RREQIEEALAEYAGLEVTLLD-GQKREAMAAADAALAAS-------------GTVTL--ELALLK 280 (380)
T ss_pred CCCeEEEEecCChh-hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCEEEECc-------------cHHHH--HHHHhC
Confidence 34566666532222 122333445555 78876654 46788899999998832 66444 467789
Q ss_pred CCeEeeccc
Q 006152 557 IPVLVCCEA 565 (658)
Q Consensus 557 VPVyV~aet 565 (658)
+|+++.-..
T Consensus 281 ~PvI~~~~~ 289 (380)
T PRK00025 281 VPMVVGYKV 289 (380)
T ss_pred CCEEEEEcc
Confidence 999988544
No 70
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=64.88 E-value=1.1e+02 Score=33.57 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=52.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcch--------HHHHHhh-
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds--------Av~~~M~- 521 (658)
.+.+++|.|.+.++..+|..+.. .++.-+|++.+ +.+.....+ ..|...|+++.++... .+...+.
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677776666666555544321 12334566653 344443333 4456679998888532 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++ ...=...| ++..+ -.|+-+|++|++.|+|
T Consensus 142 ~~~lv~v-~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSI-MHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEE-ECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 2223322 21111123 33332 3588889999988876
No 71
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=64.51 E-value=88 Score=30.33 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 33566688899999999999999999999999988643
No 72
>PRK05839 hypothetical protein; Provisional
Probab=64.28 E-value=62 Score=35.11 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=55.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH-HHHH-------hhhc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYI-------IHEV 523 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-v~~~-------M~~V 523 (658)
+....+++|.|.+.++..++......+.. ..++++ .|.+.+.... +...|+++..+.... -++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 55667899999988874443433211112 344455 4777665544 346788887775431 1121 1234
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..|++- .-=-..|.++++-=-..++-+|+.|++.+++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 444331 1111114444433334566678899998764
No 73
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=63.38 E-value=1.1e+02 Score=32.49 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--------hHHHHHhh--hc
Q 006152 455 GDVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EV 523 (658)
Q Consensus 455 gdvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~~M~--~V 523 (658)
...++..++ +.++..++..... ..-+|++.+ +..-+..+...+...|.+++++.. ..+...+. ++
T Consensus 50 ~~~~~~~~~~t~al~~~~~~~~~--~g~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~ 125 (356)
T cd06451 50 GLTFLLSGSGTGAMEAALSNLLE--PGDKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDI 125 (356)
T ss_pred CCEEEEecCcHHHHHHHHHHhCC--CCCEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCC
Confidence 344444444 5555444544333 334666654 222232233445567888777631 23333332 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..|++ .+.-...|.+.. --.++-+|+++++++++=
T Consensus 126 ~~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 126 KAVTL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred CEEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 55554 233334554433 334777889999988773
No 74
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.00 E-value=68 Score=36.18 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~Vlv 528 (658)
.+.|+|-+.+.++..+|......|. +|++.+ +.+.|. .+. ..+...|++++++... .+-..+. ++..|++
T Consensus 80 ~~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l 155 (431)
T PRK08248 80 IGALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFA 155 (431)
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEE
Confidence 3667777777777777766654444 566654 555443 233 4577889999888632 3333333 4555555
Q ss_pred cceeE-ecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 529 GASSV-LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 529 GAdaV-~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
- .. -..|.+.. + ..|+-+||.++++|+|=
T Consensus 156 ~--sp~NPtG~v~d-i--~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 156 E--TIGNPKGDVLD-I--EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred E--CCCCCCCcccC-H--HHHHHHHHHcCCEEEEe
Confidence 2 11 12244443 2 36777899999888763
No 75
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=62.59 E-value=29 Score=33.51 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=63.7
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcce
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAd 531 (658)
+..|+.|...||=.- ++.... .+..+|+|+|=.|.+.|.. +-. +.+....++++++|.||+=+.
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l~--~~~~~v~v~d~~~~~~~~~----------~~~-~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKLK--ERGAEVRVFDLNPDNIGEE----------PGD-VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHHC--CCCSEEEEEESSGGG--SS----------CT--EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHHh--cCCCCEEEEECCCCCCCCC----------CCc-CCHHHHHHHHccCCEEEEEee
Confidence 567899999997322 233332 4678999999988765431 111 188899999999999998766
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEeecccccccccccCC
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLD 575 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~d 575 (658)
++. || |+.-=+.....+.++++..+|.-+++..-++
T Consensus 72 Tlv-N~-------Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~ 107 (147)
T PF04016_consen 72 TLV-NG-------TIDDILELARNAREVILYGPSAPLHPEALFD 107 (147)
T ss_dssp HCC-TT-------THHHHHHHTTTSSEEEEESCCGGS-GGGGCC
T ss_pred eee-cC-------CHHHHHHhCccCCeEEEEecCchhhHHHHHh
Confidence 554 44 3332222222589999999999888865544
No 76
>PRK02947 hypothetical protein; Provisional
Probab=62.59 E-value=2e+02 Score=29.96 Aligned_cols=36 Identities=8% Similarity=-0.097 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHH-----------HHHhhhccEEEE
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAI-----------SYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv-----------~~~M~~Vd~Vlv 528 (658)
+=.++++.+.+.|+++..|+++.- +.+.+.+|.||.
T Consensus 121 ~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 121 VPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 445667899999999999999763 577778998885
No 77
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=62.10 E-value=71 Score=34.75 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~Vlv 528 (658)
.+.|++-+...++..+|..+...|. +|++.+ +.+.+.. +. ..+...|+.+.++... .+...+. +...|++
T Consensus 56 ~~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~ 131 (369)
T cd00614 56 EAALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV 131 (369)
T ss_pred CCEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE
Confidence 3566665555667666665544443 455433 4554533 33 3456789999888643 2333332 3444544
Q ss_pred cceeEec-CCCeecccchHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~a-NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+.. .|.+.. --.|+-+||.||++++|
T Consensus 132 --e~~~np~g~~~d---l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 --ESPTNPTLKVVD---IEAIAELAHEHGALLVV 160 (369)
T ss_pred --ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 23322 233322 23577788999998876
No 78
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=61.87 E-value=57 Score=29.15 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=51.1
Q ss_pred EEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--h-HHHHHhh------hcc-E
Q 006152 457 VLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--N-AISYIIH------EVT-R 525 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--s-Av~~~M~------~Vd-~ 525 (658)
+|-||.....+..+|....++ ...++|||++..+.-+-...++++.+.+..++++.- + ..+..+. .-+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456666667777888877766 667999999888866777778888777788888853 2 3333332 233 3
Q ss_pred EEEcceeEecCC
Q 006152 526 VFLGASSVLSNG 537 (658)
Q Consensus 526 VlvGAdaV~aNG 537 (658)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 344566555554
No 79
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=61.84 E-value=2.7e+02 Score=31.39 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=56.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~Vd~VlvGA 530 (658)
.|..++.+|....+..+.+.+.+.|-...++++++.+..--..+...+...+.++.++.+ ..+..++++. ++
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577888888876665655556677877655666665443333333445555666666554 3344444432 23
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
|-++.| ..-..+|+..+||++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333322 223478999999998664
No 80
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=61.78 E-value=2.2e+02 Score=30.15 Aligned_cols=39 Identities=15% Similarity=-0.068 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
.|-.+.++...+.|+++..|||+..+-+-+.+|.+|...
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~ 229 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVP 229 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEecc
Confidence 455666788999999999999999999999999998864
No 81
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=60.79 E-value=83 Score=34.77 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHHHHhCCCcEEEEc-c-hHHHHHhh--hccEEEEc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTH-I-NAISYIIH--EVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vT~I~-D-sAv~~~M~--~Vd~VlvG 529 (658)
.+.|+|-+...++..+|......|. +|++. .|.+.+. .+...+...|++++++. | ..+...+. +...|++
T Consensus 69 ~~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i- 143 (385)
T PRK08574 69 VDALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI- 143 (385)
T ss_pred CcEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE-
Confidence 3566665555566556655544443 45543 3555443 34445567788887753 2 33444443 3444443
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+. .+|.++. --.|+-+||.|+++++|
T Consensus 144 -e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 -ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred -ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3322 2344444 23677789999998876
No 82
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=60.45 E-value=43 Score=30.46 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=54.3
Q ss_pred EEEeeCCh--HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---------hHHHHHhh--hc
Q 006152 457 VLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~S--saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~~M~--~V 523 (658)
++++.+.. .-+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+--+++ ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 45555543 223345555554 4688887663 56788899999988732 22333333 79
Q ss_pred cEEEE----cceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 524 TRVFL----GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~Vlv----GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|.||- |.+....+| |.+=-.|-.++||++-.
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT~ 107 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLITN 107 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCccccc
Confidence 99986 444334444 44555788999999743
No 83
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=60.35 E-value=1e+02 Score=33.71 Aligned_cols=49 Identities=8% Similarity=0.147 Sum_probs=32.2
Q ss_pred hHHHHHhhhccEEEEccee----EecCCCeeccc----chHHHHHHHhhCCCCeEee
Q 006152 514 NAISYIIHEVTRVFLGASS----VLSNGTVCSRV----GTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 514 sAv~~~M~~Vd~VlvGAda----V~aNG~VvNKi----GT~~lAl~Ak~~~VPVyV~ 562 (658)
.++-.++..=..||+..+. +-.||.+.|-- +=...+++|...+--.++.
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 5566677766777777665 44677766642 2445578899988865554
No 84
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=60.29 E-value=76 Score=34.94 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=53.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M~ 521 (658)
+....+++|.|.+.++..++....+.| -+|++. .|.+.+.. ..+...|+++..+... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEG--DNILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCC--CEEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 455678899999888865555443333 244443 36665543 3355678888777531 1112222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++.+|++ .| .-|..|+ ..|+-+|++|++.+++
T Consensus 176 ~~~~~i~~------~~--p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM------TN--PSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE------eC--CCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3334433 12 2355664 4556678888887654
No 85
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=60.29 E-value=79 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=27.5
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++|+|++|.+. + ...+.| ....-+.++-++||+|+=
T Consensus 103 ~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 103 DMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEec
Confidence 79999999985 2 344577 455567888999999973
No 86
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=60.17 E-value=1.4e+02 Score=31.28 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=36.7
Q ss_pred EEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 483 ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
+++.-++-..+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 192 I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 192 LVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 33444444455566778889999999999999989988899999974
No 87
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=58.99 E-value=1.6e+02 Score=31.21 Aligned_cols=102 Identities=19% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--------hHHHHHhhhc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~~M~~V 523 (658)
+...++|-|.+.++..++..+... ++.-+|++.+.- +-. +.+.+...|+++..+.. ..+-..+.+-
T Consensus 76 ~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~--h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 76 DAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA--HFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc--hHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhC
Confidence 345677777666665555555432 234567776632 211 22333456888887752 2233333322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++.++....-...|.+.. --.|+-+|++|++.|+|=
T Consensus 152 ~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD 187 (371)
T PRK13520 152 TIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVD 187 (371)
T ss_pred CEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEE
Confidence 333332222233454433 345777899999988873
No 88
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=58.82 E-value=1.1e+02 Score=33.66 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=50.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
+.|++-+...++..++. ....| -+|++.+ +.+.|. ++. ..+...|+.++++... .+-..+. +..+|++
T Consensus 64 ~~l~~~sG~~al~~~l~-ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~l- 137 (378)
T TIGR01329 64 RAFAFSSGMAALDVITR-LLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLL- 137 (378)
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEE-
Confidence 45555555555654443 44333 3566643 445553 333 3456689999888633 2222332 2333332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..---..|.+.. --.++-+||+|+++++|=+
T Consensus 138 e~psnptg~v~d---l~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 138 ESPTNPLQKIVD---IRKISEMAHAQNALVVVDN 168 (378)
T ss_pred ECCCCCCCeeec---HHHHHHHHHHcCCEEEEEC
Confidence 111112333332 3456778899998877633
No 89
>PRK09932 glycerate kinase II; Provisional
Probab=58.78 E-value=12 Score=41.80 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccccc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
.|.++.-++.. +-..|+.+|+||.|=-++-. ....--..+.+|-+|+.|+|||+++|.+...
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCcccc--cccCCccHHHHHHHHHHcCCCEEEEecccCC
Confidence 67777766543 24567889999999766532 3344445677888999999999999998644
No 90
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=58.52 E-value=75 Score=34.11 Aligned_cols=95 Identities=18% Similarity=0.057 Sum_probs=53.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
+...++++|.|.+.++..++... ...| -+|++ + .|.+.+...+.+ ..|+++..+.+ . ..++. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~g--d~Vl~-~-~p~y~~~~~~~~--~~g~~~~~~~~--~----~~l~~--~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPG--DVVVI-P-ELAYPTYEVGAR--LAGATVVRADS--L----TELGP--QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCC--CEEEE-C-CCCcccHHHHHH--hcCCEEEecCC--h----hhCCc--ccc
Confidence 44568999999999885433333 2333 24444 4 377766554433 35877776643 1 11110 122
Q ss_pred eeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 531 SSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
..|+-+ ..-|..|+. .++-+|++|++.+++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333434 356778843 566778899986653
No 91
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=58.51 E-value=1e+02 Score=34.34 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=56.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
+.|+|-+.+.++..+|..+.+.|. +|++. .|.+.|.. +. ..+...|+.++++... .+-..+. +...|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 567777767777666766655454 56654 35565532 32 4567789999888632 2333332 4555554
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+... .+|.+.. --.|+-+|++|+++++|=
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEEE
Confidence 2221 1233332 245677799999988763
No 92
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=58.33 E-value=1.1e+02 Score=27.92 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=52.5
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHH-------HH---h--
Q 006152 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-------YI---I-- 520 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~-------~~---M-- 520 (658)
....+++|.|.+.++..++..+.. ...+|++.+. .+.|... ..+...|.++.++....-. .+ .
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLG--PGDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 455678888777777666665543 2345666552 3333321 3445667777766432111 11 1
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.+...|++.. ...+++..... -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 1333333332 12223222222 4678888999988876
No 93
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=57.57 E-value=1.4e+02 Score=26.49 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCeeEEE-EeCCCC---CchHHHHH----HHHHhCCCcEEEEcchHH-HHHhh-----hccEEEEcce
Q 006152 466 AVEMILQHAHELGKQFRVV-IVDSRP---KHEGKLLL----RRLVRKGLSCTYTHINAI-SYIIH-----EVTRVFLGAS 531 (658)
Q Consensus 466 aV~~vL~~A~e~gk~f~Vi-V~ESRP---~~EG~~La----~eL~~~GI~vT~I~DsAv-~~~M~-----~Vd~VlvGAd 531 (658)
+|+..+..|.+.+..++++ |.+... ..+..+.. ..+.+.|+++..+..... .-++. ++|.+++|++
T Consensus 15 al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~ 94 (124)
T cd01987 15 LIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKS 94 (124)
T ss_pred HHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCC
Confidence 4444444455545555544 444332 12344432 345567888766654333 22332 5899999998
Q ss_pred eEecCCCeec-ccchHHHHHHHhhCCCCeEee
Q 006152 532 SVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aV~aNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.- |.+-. -.|+-.--++-+.-++||+|+
T Consensus 95 ~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 95 RR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 53 22222 234433334333348998886
No 94
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=57.42 E-value=10 Score=37.84 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCcEEEEcchHHHH-HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 496 LLLRRLVRKGLSCTYTHINAISY-IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsAv~~-~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++..|.+.|+.|++...+++.. -+...|.|||||.--+ |..-..++.+.-.-...-.+.|+=+.|
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 45678899999999999999987 5679999999996543 555556666665555555677765443
No 95
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=57.37 E-value=1.5e+02 Score=32.59 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=51.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchHHHHH---hh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~~---M~-~Vd~VlvG 529 (658)
+.++|-+.+.++..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.......+ +. +...|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 556655555566666655544444 45553 4444442 333 456778999988864333332 22 33344431
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
... ..|.+.. --.++-+||++|++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 111 1233322 24566778999998876
No 96
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=57.32 E-value=2.3e+02 Score=30.65 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=51.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCcEEEEcch-----HHHHHhh----
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHIN-----AISYIIH---- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~Ds-----Av~~~M~---- 521 (658)
.++++|.|.+..+..++..+.. .+..-+|++.+. .+.+.... +. ....|+.+.++... .+-.+.+
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~--~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEM--EHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcc--hhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3677777666666544443211 123346776543 22222222 22 34578888777421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+...|++- +.-...|.+.. --.|+-+|++|+++++|=+
T Consensus 159 ~~~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~ 196 (403)
T TIGR01979 159 KTKLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVDG 196 (403)
T ss_pred CCeEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEEc
Confidence 33344332 22222344433 3457778899999887743
No 97
>PLN02409 serine--glyoxylate aminotransaminase
Probab=57.11 E-value=1e+02 Score=33.89 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=50.4
Q ss_pred CEEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch--------HHHHHhh-----
Q 006152 456 DVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----- 521 (658)
Q Consensus 456 dvILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~~M~----- 521 (658)
++|++-+.+ .+++.++...++.| -+|++.+ +..-+..+...+...|+++..+... .+-..+.
T Consensus 61 ~~vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~ 136 (401)
T PLN02409 61 TPFIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNH 136 (401)
T ss_pred CEEEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCC
Confidence 444444444 34444444444333 3677766 4444555555566778888777522 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHH--HhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMV--AYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~--Ak~~~VPVyV 561 (658)
++..|++ .+.-...|.+.. --.++-+ ||.|++.++|
T Consensus 137 ~~k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 137 KIKAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred CccEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 2344444 333334554443 2234555 8888877665
No 98
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=56.63 E-value=1.2e+02 Score=32.57 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=61.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHH-hCCCcEEEEcc--------hHHHHHh-hh
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV-RKGLSCTYTHI--------NAISYII-HE 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~-~~GI~vT~I~D--------sAv~~~M-~~ 522 (658)
.++++|.+.+..++.++..... ..+.-+|+++..- +.+.... .++. ..|+++++|.. ..+...+ ++
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~ 139 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD 139 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccccccccchhhhhhhhhhhccc
Confidence 5678887777778776666621 2333466665543 4444433 4454 78999999864 2233333 35
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.|++-. .-..+|. .+. --.|+-+||++++.++|=
T Consensus 140 ~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~vD 175 (371)
T PF00266_consen 140 TRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVVD 175 (371)
T ss_dssp ESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEEE
T ss_pred cceEEeec-ccccccE-Eee--eceehhhhhccCCceeEe
Confidence 66665543 2234554 443 446778889999888873
No 99
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=56.43 E-value=2.7e+02 Score=29.60 Aligned_cols=97 Identities=18% Similarity=0.060 Sum_probs=48.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhh---ccE
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE---VTR 525 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~---Vd~ 525 (658)
+...+.|++.+.+..+..++....+.| -.|++.+ |.+.....+.. ..|.++..+.. ..+-..+.. ..+
T Consensus 97 ~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~~--~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~i~~~~~~~~ 170 (385)
T PRK05958 97 FGAERALLFSSGYAANLAVLTALAGKG--DLIVSDK--LNHASLIDGAR--LSRARVRRYPHNDVDALEALLAKWRAGRA 170 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEeC--ccCHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhccCCCe
Confidence 333456666655555544443333223 3555543 55544333333 35777666642 344445543 233
Q ss_pred EEEcceeEecCCCeecccc----hHHHHHHHhhCCCCeEe
Q 006152 526 VFLGASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiG----T~~lAl~Ak~~~VPVyV 561 (658)
+++ ...+ .|..| -..|+-+|+.|++.+++
T Consensus 171 lvi-~~~~------~~~~G~~~~l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 171 LIV-TESV------FSMDGDLAPLAELVALARRHGAWLLV 203 (385)
T ss_pred EEE-EEec------ccCCCCcCCHHHHHHHHHHhCCEEEE
Confidence 333 2222 33333 34677889999987664
No 100
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.29 E-value=56 Score=28.95 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHhCCCcEEEE------cchH--HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 497 LLRRLVRKGLSCTYT------HINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 497 La~eL~~~GI~vT~I------~DsA--v~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+...|.+.|...... .... +-..++++|+||+=.|.|- -.-+..+--.||.+++||+.+
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-------hHHHHHHHHHHHHcCCcEEEE
Confidence 345566667666666 3333 4555567799988766554 334556667899999999986
No 101
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=56.22 E-value=56 Score=30.62 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=52.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
.|..||.+|.+.+-..++..+++.|-. +|+|+. |-......|+..+ .+..+.++....+...+.++|.||..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEe
Confidence 478999999998888888888877644 344443 5444566666666 56677888877788889999988654
No 102
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=56.06 E-value=1.9e+02 Score=31.41 Aligned_cols=102 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCcEEEEcch--------HHHHHhh-
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds--------Av~~~M~- 521 (658)
.++++|-|.+..+..++..... ..+.-+|++.+ |.+.+.... ......|++++++... .+...+.
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 4566676666666555544321 12334677765 444443333 2335679988887521 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+...|++ +..-...|.+.. .-.|+-+|+++|++|+|=
T Consensus 160 ~t~lv~i-~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD 196 (401)
T PRK10874 160 RTRILAL-GQMSNVTGGCPD---LARAITLAHQAGMVVMVD 196 (401)
T ss_pred CcEEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEEE
Confidence 2333333 222223343321 235777899999887763
No 103
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=56.04 E-value=30 Score=41.13 Aligned_cols=50 Identities=32% Similarity=0.385 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEE-eCCCCCch-HHHHHHHHHhCCCcEEEEc
Q 006152 462 GSSSAVEMILQHAHELGKQFRVVI-VDSRPKHE-GKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~E-G~~La~eL~~~GI~vT~I~ 512 (658)
+.|..| ..|.+|+++||+..|.| +-.|=.-| -...|+.|.++|+.|.|-.
T Consensus 382 ~dSpIV-~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 382 KDSPIV-RALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCHHH-HHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 446677 55677778899998876 33443333 2455789999999988853
No 104
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=55.91 E-value=53 Score=38.18 Aligned_cols=114 Identities=23% Similarity=0.338 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006152 373 LSRDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (658)
Q Consensus 373 ~~r~L~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~ 431 (658)
...+|.+.|..+-++..+-+|+|+.+ ||+..-+.+.++.. +.+++.+|+++.+.++-+.
T Consensus 205 ~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~~ 284 (546)
T PF01175_consen 205 VTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPEE 284 (546)
T ss_dssp EESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHHH
T ss_pred EcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHHH
Confidence 34567888888888889999999875 89987776665541 1134789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006152 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~---~~I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
|.+. +.+.|.+|.. ++-..|..+.=|||+ +-|..+|+-.+..|+ .||=+|+-..|
T Consensus 285 ~~~~----v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGdp 360 (546)
T PF01175_consen 285 FKER----VQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGDP 360 (546)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--H
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCCH
Confidence 8754 5566666654 444678999999986 345567777777777 47877776655
No 105
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=55.89 E-value=1.8e+02 Score=31.60 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH--HHHHhCCCcEEEEcch--------HHHHHhh-
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds--------Av~~~M~- 521 (658)
.++++|.|.+..+..++..... .+..-+|++.+ |.+.+.... ..+...|+.+.++... .+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4577787777777555544321 12233666644 444443222 2345678888877421 2222332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++ .+.=...|.+.. --.|+-+||.||+.++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3344433 222223344422 23467788999988776
No 106
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=55.76 E-value=1.2e+02 Score=33.03 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=11.4
Q ss_pred HHHHHHhhCCCCeEe
Q 006152 547 CVAMVAYGFHIPVLV 561 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (658)
.++-+||+||++|+|
T Consensus 179 ~I~~la~~~g~~liv 193 (387)
T PRK09331 179 KVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHHHHcCCEEEE
Confidence 467778888888775
No 107
>PRK05443 polyphosphate kinase; Provisional
Probab=55.75 E-value=34 Score=41.20 Aligned_cols=50 Identities=30% Similarity=0.284 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCcEEEEcc
Q 006152 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 463 ~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I~D 513 (658)
.|..+ ..|..|+++|+..+|+|---.+..| ....+++|.++|+.+.|-..
T Consensus 379 ~s~iv-~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 379 DSPIV-DALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred CHHHH-HHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 34555 6788888899999988765544444 34446899999999977433
No 108
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=54.39 E-value=1.2e+02 Score=32.97 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=54.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH---------HHHHhh---
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---------v~~~M~--- 521 (658)
+.++++|-|.+.++..++....+.| -.|++. .|.+.+.... +...|+.+.++.... +...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPG--DKVLLP--APAYPGYEPI--VNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCCcchHHH--HHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 3578888898888866666544333 345554 3766665433 334688877775321 111221
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .---..|.+++..--..++-+|++|++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23344431 0000114444333345567788899987775
No 109
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=54.34 E-value=19 Score=31.70 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEE----EEcch---H----HHHHhh--hccEEEEcceeEec
Q 006152 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT----YTHIN---A----ISYIIH--EVTRVFLGASSVLS 535 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT----~I~Ds---A----v~~~M~--~Vd~VlvGAdaV~a 535 (658)
.+.+...+.| |++|.+++ .++.|.+.||+|+ ++... . +..+|+ ++|+||.=-+
T Consensus 4 ~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~---- 69 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY---- 69 (95)
T ss_dssp HHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE------
T ss_pred HHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC----
Confidence 4455666656 89998874 5688999999943 34333 1 555665 7998875322
Q ss_pred CCCeecccchHHHHHHHhhCCCCeE
Q 006152 536 NGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 536 NG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
.+.-......|.+--+|-.|+||.+
T Consensus 70 ~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 70 PFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred CCcccccCCcHHHHHHHHHcCCCCc
Confidence 2221222367888999999999975
No 110
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.28 E-value=78 Score=35.68 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=57.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
+..|+.+|.+..=..+.+.+.+.| +.|++.|.++...=..++.+|.+.||.+..-.+. ...+.+.|.||+..- |-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spg-i~ 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPS-MR 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCC-CC
Confidence 567899988765334444455445 5888899776433223445688899877654332 233467888887632 22
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 535 SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. +...-..|++.++|++-
T Consensus 89 ~---------~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 89 I---------DSPELVKAKEEGAYITS 106 (458)
T ss_pred C---------CchHHHHHHHcCCcEEe
Confidence 1 23456677788888763
No 111
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=54.19 E-value=1.8e+02 Score=31.15 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=52.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--------hHHHHHhhh-cc-EE
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE-VT-RV 526 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~~M~~-Vd-~V 526 (658)
+++|-+.+..+..++......|. +|+|+.. ..-|.++...+...|++++++.. ..+...+.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 45555666667666655544332 4444331 22244444445668998887753 234444442 11 22
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 527 lvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.-++.=...|.+ +.+ ..|+-+||.|+++++|=
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEEE
Confidence 3323322334543 333 56888899999877663
No 112
>PRK14012 cysteine desulfurase; Provisional
Probab=54.15 E-value=3.2e+02 Score=29.92 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=50.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcch--------HHHHHhhhc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHEV 523 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds--------Av~~~M~~V 523 (658)
..+++|-|.+.++..+|..+.+ .+..-+|++.+ +.+.....+ +.|...|+.+.++... .+-..+..=
T Consensus 67 ~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~--~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~ 144 (404)
T PRK14012 67 REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSK--TEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDD 144 (404)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEec--CccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 3467776666666544443321 13333566643 334333333 4566679988877421 222223222
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++++-.+.-...|.+. .+ -.|+-+||.|+++|+|
T Consensus 145 t~lv~~~~~~n~tG~~~-~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 145 TILVSIMHVNNEIGVIQ-DI--AAIGEICRERGIIFHV 179 (404)
T ss_pred CEEEEEECcCCCccchh-hH--HHHHHHHHHcCCEEEE
Confidence 33333222212224333 22 4577788999988876
No 113
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=53.66 E-value=56 Score=35.63 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHhCCCcEEEEcch--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeEeeccc
Q 006152 498 LRRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCEA 565 (658)
Q Consensus 498 a~eL~~~GI~vT~I~Ds--------Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~----~~VPVyV~aet 565 (658)
+..|.+.||.|++|... ++-...++...|+ ++.++....-.|....+.++.+ ...||.-++-.
T Consensus 220 a~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv-----~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~ 294 (327)
T CHL00144 220 VKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVL-----IVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQ 294 (327)
T ss_pred HHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEE-----EEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccC
Confidence 45667777777777543 3344455666665 4678888888999999999887 46788877665
Q ss_pred ccccc
Q 006152 566 YKFHE 570 (658)
Q Consensus 566 yKf~~ 570 (658)
..|.+
T Consensus 295 d~~~~ 299 (327)
T CHL00144 295 DVPTP 299 (327)
T ss_pred CCcCC
Confidence 44443
No 114
>PRK05968 hypothetical protein; Provisional
Probab=53.59 E-value=1.6e+02 Score=32.54 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=51.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcch---HHHHHhhhccEEEEcc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~~M~~Vd~VlvGA 530 (658)
..|++-+.+.++..+|....+.|. +|++.+ +.+.+ ..+. ..+...|++++++... .+-..+++...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 455554444455445544444443 566544 34443 3333 4566789998887432 333334455555551
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
. ..|-+....=-..++-+||+|+++|+|=
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMID 183 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 1 1222222222234677889999987763
No 115
>PRK06234 methionine gamma-lyase; Provisional
Probab=53.44 E-value=1.4e+02 Score=33.10 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchH---HHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsA---v~~~M~-~Vd~VlvG 529 (658)
+.|+|-+.+.++..+|......|. +|++.+ |.+.+. .+. ..+...|++++++.... +-..+. +..+|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 455555555566555554444444 566544 555443 232 45677899998886432 322332 33344432
Q ss_pred ceeEecCCCeecccchHHHHHHHhhC--CCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~--~VPVyV 561 (658)
.---..|.+.. --.|+-+|+.| ++.|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11112243332 23577778887 665554
No 116
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=53.39 E-value=87 Score=33.67 Aligned_cols=94 Identities=15% Similarity=0.013 Sum_probs=56.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHh-hhccEEEEc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M-~~Vd~VlvG 529 (658)
+...++++|.|.+.++..++... .+.| -.|++ + .|.+-+.... +...|..+..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~g--d~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPG--DTVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCC--CEEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 55678999999999886655443 2333 24444 4 6777666544 34568877776431 1111 12333332
Q ss_pred ceeEecCCCeecccchHH-------HHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTAC-------VAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~-------lAl~Ak~~~VPVyV 561 (658)
+ ...|..|+.. ++-+|++|++.+++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 3 3678888633 67778999988775
No 117
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=52.86 E-value=2e+02 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=30.1
Q ss_pred hHHHHHhhhccEEEEcce----eEecCCCeeccc----chHHHHHHHhhCCCCeEeec
Q 006152 514 NAISYIIHEVTRVFLGAS----SVLSNGTVCSRV----GTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 514 sAv~~~M~~Vd~VlvGAd----aV~aNG~VvNKi----GT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-.++.+=-.+|+..+ .+..||.+.|-- +=...+++|.+.+.-.++.+
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Liil 229 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVIL 229 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEE
Confidence 455566665555666655 445555544422 24567788888887655553
No 118
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=52.80 E-value=94 Score=34.08 Aligned_cols=97 Identities=10% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCCEEEeeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch---HHHHHhh--hcc
Q 006152 454 DGDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH--EVT 524 (658)
Q Consensus 454 dgdvILT~g~S----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---Av~~~M~--~Vd 524 (658)
.|..|-.||-| .++..+++...+++...+|+|+-+- ..|.+++..+...++.+.|.+.. .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 46789999887 4566777777777778888776554 44677776665667888888732 4444555 457
Q ss_pred EEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 525 RVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 525 ~VlvG-AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.|++. .| +.. .+...|+..++|++++..
T Consensus 127 ~v~~~~~~-~~~-----------~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 127 LVIIMETE-LWP-----------NLIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEEEecc-hhH-----------HHHHHHHHCCCCEEEEec
Confidence 77542 11 111 133457889999998643
No 119
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=52.56 E-value=2.5e+02 Score=30.01 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=55.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHH-HHHHH-hCCCcEEEEcch-----HHHHH---hh-h
Q 006152 455 GDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLL-LRRLV-RKGLSCTYTHIN-----AISYI---IH-E 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~L-a~eL~-~~GI~vT~I~Ds-----Av~~~---M~-~ 522 (658)
..+++|-|.+.++..++..+... ++.-+|++.+ +.+-+... .+.+. ..|+.+.+|... -.-.+ +. +
T Consensus 62 ~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 139 (373)
T cd06453 62 DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTER 139 (373)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCC
Confidence 35667777777776666555431 1344566654 33334322 23343 678888887532 11222 22 4
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++.|++. ..-...|.+.. + -.|+-+|++|+++++|=+
T Consensus 140 ~~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D~ 176 (373)
T cd06453 140 TKLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVDG 176 (373)
T ss_pred ceEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEEh
Confidence 4455442 22222444433 2 367788999998888743
No 120
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=52.56 E-value=1.3e+02 Score=34.03 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=51.5
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcc-hHHHHHhh---hccEEEEcc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI-NAISYIIH---EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D-sAv~~~M~---~Vd~VlvGA 530 (658)
.|+|-+.+.++..+|....+.|. +|++..+ .+.|-. +. +.|.+.|+.++++.| .....+.+ .=+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 45555545566666665554443 5666654 334432 33 456778998888852 22222222 2233333 2
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 531 daV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.+. ..|.+.. + -.|+-+||.||++|+|=+
T Consensus 162 e~~sNp~G~v~D-l--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 162 ETISNPQIDVLD-I--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred ECCCCCCCeecC-H--HHHHHHHHHcCCEEEEEC
Confidence 2222 1232222 1 357889999999887743
No 121
>PRK13938 phosphoheptose isomerase; Provisional
Probab=52.46 E-value=2.4e+02 Score=28.58 Aligned_cols=36 Identities=3% Similarity=-0.168 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+=.++++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 128 ~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 128 SVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 334556788889999999998777777777887764
No 122
>PRK09028 cystathionine beta-lyase; Provisional
Probab=52.27 E-value=1.4e+02 Score=33.47 Aligned_cols=94 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
++++|-|-..++..++....+.|. +|++.+ |.+.| .+++ ..|...|+.++++.. ..+...+. +...|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 566666666677666665555453 566664 44544 3455 456778999988742 33444443 44444442
Q ss_pred ceeEecCCCeecccch----HHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT----~~lAl~Ak~~~VPVyV 561 (658)
+.-|..|. -.|+-+||+|++.++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23344453 4566778899987765
No 123
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=52.21 E-value=83 Score=31.72 Aligned_cols=75 Identities=28% Similarity=0.374 Sum_probs=44.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCcEEEEc----------chHHHHHhh--hc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~~M~--~V 523 (658)
.||.-|+++..+.+|....+.+....|.+ +-.||..++ .....+.||++.++. +..+...++ ++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~---~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYG---LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchH---HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47777889998777666655444455443 344565544 344567799988755 223344444 57
Q ss_pred cEEEE-cceeEe
Q 006152 524 TRVFL-GASSVL 534 (658)
Q Consensus 524 d~Vlv-GAdaV~ 534 (658)
|.+|+ |-..|+
T Consensus 81 D~iv~~~~~~il 92 (190)
T TIGR00639 81 DLVVLAGFMRIL 92 (190)
T ss_pred CEEEEeCcchhC
Confidence 87766 333443
No 124
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=52.12 E-value=17 Score=40.65 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
.|.++.-++.. +-..++.+|.||.|=-++- .....--..+.+|-.|+.|+|||+++|.+....
T Consensus 266 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 266 PGIDLVLELLD------------LEQKIKDADLVITGEGRLD--RQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred cHHHHHHHhhC------------HHHHhcCCCEEEECCCccc--ccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 57776655542 3455678999999976653 333344467788889999999999999986443
No 125
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=52.04 E-value=2.1e+02 Score=30.54 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=51.1
Q ss_pred CEEEeeCC-hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch--------HHHHHhhhcc--
Q 006152 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVT-- 524 (658)
Q Consensus 456 dvILT~g~-SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~~M~~Vd-- 524 (658)
++|+..++ +..+..++......| =+|+|.+ +..-|..+...+...|+++.+|... .+...+.+-+
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~--~~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRD--GKVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCC--CeEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44544444 556766666654333 2555554 3344545555566789998888542 1222222111
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 525 ~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+++.-++.=...|.+.. ...++-+||.|+++++|=
T Consensus 133 ~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 133 THVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred cEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEE
Confidence 12221111112343332 357888899999866654
No 126
>PRK07568 aspartate aminotransferase; Provisional
Probab=51.81 E-value=1.4e+02 Score=32.41 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=52.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---h--------HHHHHh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N--------AISYII 520 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s--------Av~~~M 520 (658)
+....+++|-|.+.++..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+.. . .+...+
T Consensus 86 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 86 VEPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred CCcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 344567888888887755554443333 3566654 6654432 234567888777642 1 111222
Q ss_pred h-hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 521 H-EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
. ++.+|++ .| .-|..|+ -.|+-+|+++++.+++
T Consensus 160 ~~~~~~v~i------~~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 160 TPKTKAILI------SN--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred CccceEEEE------EC--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 1 2333322 22 2366665 3466778889987664
No 127
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=51.73 E-value=65 Score=32.67 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=45.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEE-eCCCCCchHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh--hc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV-~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~~M~--~V 523 (658)
.||.-|+++.+..++....+.+....|.+ +--++...+ .....+.||||..+.. ..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 57777889988776665554444455443 233344433 3455678999988652 23334443 68
Q ss_pred cEEEE-cceeEec
Q 006152 524 TRVFL-GASSVLS 535 (658)
Q Consensus 524 d~Vlv-GAdaV~a 535 (658)
|.+|+ |-..++.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 88776 4445543
No 128
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=51.26 E-value=1.4e+02 Score=32.10 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=51.5
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch---------H-HHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------A-ISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------A-v~~~M~ 521 (658)
+...++++|.|.+.++..+++ +...| .|++. .|.+.... ..+...|+++..+... . ...+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~-~l~~g---~viv~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVS-GLKPR---RAMIV--TPGFAEYR--RALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHH-HhCCC---CEEEe--CCCcHHHH--HHHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 344567888888777755554 44333 45444 26655433 2345568877776421 1 111113
Q ss_pred hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++.+|++. ..-|..|. ..|+-+|+.|++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 45555441 34566664 3456678888876654
No 129
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=51.09 E-value=1.3e+02 Score=33.37 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=49.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHH-HhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRL-VRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL-~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
++|+|.|-..++..+|....+.| -+|++.+ |.+.| ..+...+ ...|+.++++.. ..+...+. +..+|++-
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 46666666666655555444333 3555543 66665 4444444 345567777632 22222332 44555551
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. -..++-+|+.++++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11111233332 23577778888876654
No 130
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.08 E-value=1.5e+02 Score=33.68 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=56.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcc----hHHHHHhhhccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI----NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~D----sAv~~~M~~Vd~VlvG 529 (658)
..|+|-+-..++..+|..+.+.| -+|++ +.+.+.|- .+. ..|...|+.++++.. ..+...+..=+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~G--D~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSG--DHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCC--CEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 35555555566665666554444 36666 44555543 333 447889999999853 345555554455555
Q ss_pred ceeEecCCCeeccc----chHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRV----GTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKi----GT~~lAl~Ak~~~VPVyV 561 (658)
.+.. | |.. ---.|+-+||.||++++|
T Consensus 153 ~e~p---g---nP~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 153 AESL---G---NPAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EEcC---C---CccccccCHHHHHHHHHHcCCEEEE
Confidence 3432 1 333 356678899999998876
No 131
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=51.04 E-value=65 Score=32.16 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=53.3
Q ss_pred EEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhhccEEEEcceeE
Q 006152 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 458 ILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~Vd~VlvGAdaV 533 (658)
||.+|-+-.+. .++..+...+...++++ |+. -...+.+|.+.|+.+..... .++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~---R~~--~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALV---RDP--SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEE---SSS--HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEE---ecc--chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 56676543222 22333333344444443 222 44567889999987653332 55666677777776532211
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
. -.-.-....++-+|++.||..||...
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 1 11122345577788889999998654
No 132
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=50.46 E-value=2e+02 Score=31.43 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCEEEeeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCcEEEEcc--------hHHHHHhh-
Q 006152 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHI--------NAISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~D--------sAv~~~M~- 521 (658)
.++++|.|.+..+..++.... ...+.-+|++.+. .+.+.... ..+ ...|+++.++.. ..+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 468888777666654443321 1122336666542 22222222 233 457888888752 12222332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++- +.=...|.+.. ...|+-+||.+++.|+|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444443 22233444432 23577788889887665
No 133
>PRK07683 aminotransferase A; Validated
Probab=50.34 E-value=1.2e+02 Score=32.91 Aligned_cols=93 Identities=23% Similarity=0.290 Sum_probs=52.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH---------HHHHhhhccEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIHEVTRV 526 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA---------v~~~M~~Vd~V 526 (658)
++++|.|.+.++..++....+.|. +|++ ..|.+.+...+. ...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 789999988888665555444443 4444 356666654443 34688888875432 22222211222
Q ss_pred EEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 527 FLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 lvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++ +. ..-|..|+ ..++-+|+++++.+++
T Consensus 165 i~-----i~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV-----LP--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE-----Ee--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21 11 23456666 4567788888876553
No 134
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=50.12 E-value=4e+02 Score=29.93 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcC-CeeEEEEe-CCCCCchHHHHHHHHHhCCCcE--E---EEcch----HHHHHhh-
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIV-DSRPKHEGKLLLRRLVRKGLSC--T---YTHIN----AISYIIH- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~g-k~f~ViV~-ESRP~~EG~~La~eL~~~GI~v--T---~I~Ds----Av~~~M~- 521 (658)
.|..++.++....+..++..+.+.| -..-+..+ -..+..++....+++.+.|+.. . ++.|+ .+..+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 5777777777665556666677778 55443333 2344444433445666767632 2 54555 3444454
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.|.+|.+... .. ...|+..|+|++-.
T Consensus 372 ~~pDl~i~~~~~-------------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRHGG-------------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcCCC-------------cc-HHHHHhcCCCEEec
Confidence 45665543211 11 12347799999866
No 135
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=49.98 E-value=3.1e+02 Score=29.25 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=48.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHH-HhCCCcEEEEcchH-----HHHHhhhc---cE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINA-----ISYIIHEV---TR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL-~~~GI~vT~I~DsA-----v~~~M~~V---d~ 525 (658)
.+++|.|.+.++..++....+ ..-+|++.+ +.+.+... ...+ ...|+++.++.... ...+-+.+ .+
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLK--EGDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccC--CCCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 567777777777665554333 234666644 33333221 2223 33488887775221 11222222 22
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+++-.+.-...|.+.. + -.|+-+||+++++|+|
T Consensus 140 ~v~~~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVVSHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEEECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 3322222223444443 2 3477788999987766
No 136
>PLN02828 formyltetrahydrofolate deformylase
Probab=49.94 E-value=64 Score=34.51 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCC-CchHHHHHHHHHhCCCcEEEEcc-------hHHHHHhhhccEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRP-KHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIHEVTRV 526 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP-~~EG~~La~eL~~~GI~vT~I~D-------sAv~~~M~~Vd~V 526 (658)
-.||.-|+++.++.+|. +++.|. ...|.++=|.+ ...+..+.....+.|||+.+++. ..+...+.++|.|
T Consensus 73 iavlvSg~g~nl~~ll~-~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLH-RWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHH-hhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 46788899999977555 555564 34544443433 22233444555778999998753 2344455678888
Q ss_pred EEc
Q 006152 527 FLG 529 (658)
Q Consensus 527 lvG 529 (658)
++.
T Consensus 152 VLA 154 (268)
T PLN02828 152 VLA 154 (268)
T ss_pred EEe
Confidence 775
No 137
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=49.89 E-value=3.1e+02 Score=28.78 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCEEEeeCChHHHHHHHHHHHHc------------CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-c-------h
Q 006152 455 GDVLLTYGSSSAVEMILQHAHEL------------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-------N 514 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~------------gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D-------s 514 (658)
...|.|.|.+.++...|..+... +....|++.+ +.+-....+ +...|+.+..+. | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46888888887765555444321 1233444433 333332222 222377777764 2 2
Q ss_pred HHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 515 AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 515 Av~~~M~~------Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+-..+.+ -.++++....-...|.+.. -..++-+|+.|+++++|=
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEEe
Confidence 23333433 3344444444444555422 356788899999988873
No 138
>PLN02778 3,5-epimerase/4-reductase
Probab=49.84 E-value=75 Score=33.54 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=21.9
Q ss_pred ecccchHHHHHHHhhCCCCeEeeccc
Q 006152 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
.|-.||..++-+|+++++.+++..-+
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 67889999999999999998776533
No 139
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=49.76 E-value=69 Score=37.74 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=60.0
Q ss_pred CeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc----c-hHHHHHhh--hccEEEEcceeEe-cCCC----------ee
Q 006152 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----I-NAISYIIH--EVTRVFLGASSVL-SNGT----------VC 540 (658)
Q Consensus 479 k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~----D-sAv~~~M~--~Vd~VlvGAdaV~-aNG~----------Vv 540 (658)
...+|+|+-.. .+=|..|++.|.+.|+++++.. | ..+...+. +.|.||=-|--.. .+-+ -+
T Consensus 379 ~~mkiLVtGa~-G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGRT-GWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECCC-chHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 44677777654 5568999999999998885432 2 24445555 5788876553221 0111 27
Q ss_pred cccchHHHHHHHhhCCCCeEeecccccc
Q 006152 541 SRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 541 NKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
|-.||..++-+|+.++++++++.-.+=|
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 8999999999999999998877554444
No 140
>PRK07503 methionine gamma-lyase; Provisional
Probab=49.74 E-value=1.9e+02 Score=32.18 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=52.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
..|+|-+.+.++..+|......| -+|++. .|.+.+. .+. ..+...|+.++.+... .+...+. +...|++
T Consensus 82 ~~i~~~sG~~Al~~~l~~ll~~G--d~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l- 156 (403)
T PRK07503 82 AAVALASGMGAITATLWTLLRPG--DEVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF- 156 (403)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCC--CEEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-
Confidence 34555554555655555443334 356663 3545332 223 4566789998887532 2333332 4445544
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..-.-..|.+.. --.|+-+|+.|+++++|
T Consensus 157 e~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 157 ETPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred eCCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 222222344433 24677788999998876
No 141
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=49.54 E-value=53 Score=38.77 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred cCCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-----CC----CcEEEE-cc----hHHH
Q 006152 453 RDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-----KG----LSCTYT-HI----NAIS 517 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-----~G----I~vT~I-~D----sAv~ 517 (658)
++|.+||+.|-+.-+.. +++++.++| ++|+++. |-......+..+|.+ .| ..++++ .| ..+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 47889999987654443 344555555 4566553 322233344444433 12 112222 22 3344
Q ss_pred HHhhhccEEEEcceeEecC-----C-CeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 518 YIIHEVTRVFLGASSVLSN-----G-TVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 518 ~~M~~Vd~VlvGAdaV~aN-----G-~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
..+..+|.||.-|-....+ + .-+|..|+..+.-+|+.+++.-+|+.-+.
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 4566788877644221100 0 11356788888888888888766665553
No 142
>PRK10342 glycerate kinase I; Provisional
Probab=49.39 E-value=21 Score=39.93 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
.|.++.-+|.. +-..|+.+|.||.|==++ |.....--..+.||-.|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 57777766542 345677899999996555 2334444456778889999999999999986444
No 143
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=49.30 E-value=1.2e+02 Score=32.92 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=59.2
Q ss_pred HHHHhc--cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhcc
Q 006152 447 HAVTKI--RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 447 ~a~~~I--~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd 524 (658)
.+++++ .+-.+|..+|.+..-+.-++........-+|+|.+ |-...-.+++.++.+.|++++...|. ..+++++|
T Consensus 118 laa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav~~aD 194 (325)
T TIGR02371 118 VAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-RTPSTREKFALRASDYEVPVRAATDP--REAVEGCD 194 (325)
T ss_pred HHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-CCHHHHHHHHHHHHhhCCcEEEeCCH--HHHhccCC
Confidence 334444 24578888899865443333322222233555554 43333456677777788887766543 34558999
Q ss_pred EEEEcc---ee-----EecCCCeecccchHH
Q 006152 525 RVFLGA---SS-----VLSNGTVCSRVGTAC 547 (658)
Q Consensus 525 ~VlvGA---da-----V~aNG~VvNKiGT~~ 547 (658)
.|+.-. +- .+.-|..+|-+|++.
T Consensus 195 iVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 195 ILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 998754 22 356788899999753
No 144
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.16 E-value=4.3e+02 Score=29.74 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh--CCCcEEEEcchHHHHHh---h--hccEE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYII---H--EVTRV 526 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~--~GI~vT~I~DsAv~~~M---~--~Vd~V 526 (658)
.|.++..++.+..+..+-+-+.+.|-...++++.+....--.++...|.+ .+..+.++.+.-..-+. . +.|.+
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 57888888887766565555567787776566654333322333344444 23344443333333332 2 24443
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 527 lvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+|+..-..+|+..+||++.++
T Consensus 382 ----------------iG~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 ----------------IGNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred ----------------EECccHHHHHHHhCCCEEEee
Confidence 233344578999999998765
No 145
>PRK12414 putative aminotransferase; Provisional
Probab=48.47 E-value=2.2e+02 Score=30.95 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH------HHHHhhhccEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------ISYIIHEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA------v~~~M~~Vd~Vlv 528 (658)
.++|+|.|.+.++..++......| -+|++. .|.+.+.... +...|..+..+.... +..+-+.++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--- 161 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPG--DEVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITP--- 161 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCC--CEEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCc---
Confidence 468899888888766665544444 346653 4666554333 333576665554221 1111111110
Q ss_pred cceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
....|+-+ ..-|..|+ ..++-+|++|++++++
T Consensus 162 ~~~~v~i~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 162 RTRMIIVN-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred ccEEEEEc-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 11222223 34567776 4456678889987665
No 146
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=48.31 E-value=94 Score=32.08 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHH----------HHh-hh
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS----------YII-HE 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~----------~~M-~~ 522 (658)
...+++|.|-+.++..++..+... .-+|++. .|.+.+. ...+...|+.+.++....-+ ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~--g~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNP--GDEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCC--CCEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 446788887777776666655433 3345554 3444443 33445567777666543222 111 14
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+..|++-. .-...|.+..----..+.-+|+.+|++|+|=+
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEec
Confidence 55555533 22233444332222234467899999988643
No 147
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=47.99 E-value=2.1e+02 Score=30.07 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=49.5
Q ss_pred CEEEeeCChH---HHHHHHHHHHHcCCee--EEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEc
Q 006152 456 DVLLTYGSSS---AVEMILQHAHELGKQF--RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~Ss---aV~~vL~~A~e~gk~f--~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~~M~~Vd~VlvG 529 (658)
.+++|+|.+. ....+|+.+.+..+.+ .|++-...|.. .++-..... .-.+.+... +-+..+|..+|.||..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~-~~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKE-YPNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHh-CCCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 5678887552 2335555444434444 44443334543 233222222 224554443 4688999999999763
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.| ....=+-..|+|+++++.
T Consensus 249 -------------~G--~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AG--STSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cc--hHHHHHHHcCCCEEEEEe
Confidence 23 123334557899998854
No 148
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=47.94 E-value=70 Score=31.00 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=15.3
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCC
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES 488 (658)
|-||-....+..+|....++...+.|||++.
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd 33 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDD 33 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEEC
Confidence 4444444555555555544434455555543
No 149
>PLN02206 UDP-glucuronate decarboxylase
Probab=47.93 E-value=67 Score=36.30 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=58.6
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEccee
Q 006152 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAda 532 (658)
.+..||..|-+--|..-| +.+.++| .+|++++.........+...+.. ..++++.-......+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~~--~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFSN--PNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhccC--CceEEEECCccChhhcCCCEEEEeeee
Confidence 457788888754444333 3344444 56777654321111122122222 335555322222344578888776632
Q ss_pred EecCCC--------eecccchHHHHHHHhhCCCCeEeecccc
Q 006152 533 VLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 533 V~aNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
...... -.|-.||..+.-+|+.++++|+.+.-.+
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1677899999999999999877665543
No 150
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=47.89 E-value=1.5e+02 Score=32.25 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=54.6
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHh
Q 006152 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYII 520 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M 520 (658)
+... .+++|.|.+.++..+++.....|....|++. .|.+.+.+.. ....|+++..+... .+-..+
T Consensus 87 ~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (393)
T TIGR03538 87 VDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESV 162 (393)
T ss_pred CCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHH
Confidence 4443 5778999998886666655555543334443 5777776544 34467777666421 111111
Q ss_pred -hhccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeE
Q 006152 521 -HEVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 521 -~~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
+++..|++ + .--|.+|+ ..++-+|+.|++.++
T Consensus 163 ~~~~k~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 163 WRRCQLLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred hhcceEEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 23444443 2 23566664 557777888887544
No 151
>PRK15482 transcriptional regulator MurR; Provisional
Probab=47.74 E-value=2.6e+02 Score=29.29 Aligned_cols=39 Identities=15% Similarity=-0.073 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 491 ~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
..+-.++++.+.+.|+++..|+|+..+.+-+.+|.+|.-
T Consensus 195 t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 195 KKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDT 233 (285)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEc
Confidence 345556678889999999999999988888899999874
No 152
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=47.56 E-value=1.8e+02 Score=31.95 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---------C-c------hH----HHHHHHHH
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K-H------EG----KLLLRRLV 502 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---------~-~------EG----~~La~eL~ 502 (658)
.|+..+.++|.+ ..||..|.+.+=..++..+...|.. ++.++|..- . + +| ..+++.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 467778888864 6788898876544455566666754 333333221 0 0 12 12225565
Q ss_pred hC--CCcEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 503 RK--GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 503 ~~--GI~vT~I~D----sAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+. ++.++.+.. ..+..++.++|.||.+.|.... -+.+.-+|+.+++|++.++
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 44 566655531 3345567889999999875432 2557788999999998653
No 153
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=47.37 E-value=4e+02 Score=28.77 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=35.7
Q ss_pred eeEEEEeCCCCCchHHHHH--HHHHhCCCcEEEEcch------HHHHHhhhc---cEEEEcceeEecCCCeecccchHHH
Q 006152 480 QFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN------AISYIIHEV---TRVFLGASSVLSNGTVCSRVGTACV 548 (658)
Q Consensus 480 ~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds------Av~~~M~~V---d~VlvGAdaV~aNG~VvNKiGT~~l 548 (658)
.-+|++.+ |.+-+.... ..+...|+++.++... .+..+...+ +++++-...-...|.+.. .-.|
T Consensus 104 gd~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i 178 (397)
T TIGR01976 104 GDEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---LAAI 178 (397)
T ss_pred CCEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---HHHH
Confidence 34666654 333332222 2345578888776421 122222221 233332222233444332 2356
Q ss_pred HHHHhhCCCCeEe
Q 006152 549 AMVAYGFHIPVLV 561 (658)
Q Consensus 549 Al~Ak~~~VPVyV 561 (658)
+-+|++|++.|+|
T Consensus 179 ~~~~~~~~~~~iv 191 (397)
T TIGR01976 179 TELVHAAGALVVV 191 (397)
T ss_pred HHHHHHcCCEEEE
Confidence 6778888876665
No 154
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=47.29 E-value=94 Score=31.86 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=46.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCC-eeE-EEEeCCCCCchHHHHHHHHHhCCCcEEEEc----------chHHHHHhh--h
Q 006152 457 VLLTYGSSSAVEMILQHAHELGK-QFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk-~f~-ViV~ESRP~~EG~~La~eL~~~GI~vT~I~----------DsAv~~~M~--~ 522 (658)
.||.-|+++.++.++. +.+.|. +.+ ++|+-++|...+.+.+ .+.||++..+. +..+-..|+ +
T Consensus 3 ~vl~Sg~Gsn~~al~~-~~~~~~l~~~i~~visn~~~~~~~~~A---~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIHD-ACLDGRVNGDVVVVVTNKPGCGGAEYA---RENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHHH-HHHcCCCCeEEEEEEEeCCCChHHHHH---HHhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 5788899999976555 455554 344 4455667887776544 44599997653 234444455 6
Q ss_pred ccEEEE-cceeEe
Q 006152 523 VTRVFL-GASSVL 534 (658)
Q Consensus 523 Vd~Vlv-GAdaV~ 534 (658)
+|.+|+ |-..++
T Consensus 79 ~Dliv~agy~~il 91 (207)
T PLN02331 79 VDFVLLAGYLKLI 91 (207)
T ss_pred CCEEEEeCcchhC
Confidence 888887 444443
No 155
>PLN02656 tyrosine transaminase
Probab=47.17 E-value=2e+02 Score=31.67 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=52.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M~ 521 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+.+...+..+ .|+.+.++... .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4456788998888887655554443343 55554 4666555444333 67777666421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.-++++ ++.|- -|..|+. .++-+|+.|++++++
T Consensus 168 ~~~~~v-----~l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVAL-----VIINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEE-----EEECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 112222 22232 3667755 356678889987764
No 156
>PRK09411 carbamate kinase; Reviewed
Probab=47.12 E-value=57 Score=35.47 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe-----eEEEEeCCCCCchHHHHHHHHHhCCCc
Q 006152 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-----FRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~-----f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
+++.++++.+..+|+||||+--|..+++ ..+..+. +.|.+.+|- ..=|..|..+|.+.|++
T Consensus 33 a~~ia~l~~~~~~vitHGNGPQVG~l~~-~~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 33 VPALARLARSYRLAIVHGNGPQVGLLAL-QNLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHHHHHcCCEEEEeCCccHHHHHHH-HHHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 3344456666799999999999955444 3332222 344444442 23366777889888875
No 157
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=47.06 E-value=2.1e+02 Score=31.64 Aligned_cols=94 Identities=21% Similarity=0.199 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
++++|-+...++..+|......| -+|++. .|.+.+ ..++ ..+...|++++++.. ..+...+. +...|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~G--D~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAG--DHVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 56666665566666665554434 356665 355544 3444 346678998887732 33444443 34444431
Q ss_pred ceeEecCCCeecccchH----HHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
+..|..|.. .|+-+|+++++.++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 233444533 367788889987775
No 158
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=46.88 E-value=1.4e+02 Score=33.10 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=51.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
..|++-+...++..+|......|. +|++. .|.+.|.. +. ..+...|++++++... .+...+. +...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 445554445556555554444443 45553 35555543 33 3466789988876532 2333332 34555542
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. ---..|.+.. --.|+-+|++|+++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1112233332 23477789999998766
No 159
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=46.81 E-value=24 Score=39.23 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccc
Q 006152 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
..|..+.-++.. +-..++++|+||.|==++-+. ++..|+ ..-+|-+||.|+|||+++|.+.+-+
T Consensus 266 ~~Gi~iV~~~~~------------le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 266 KSGIEIVLEATN------------LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred cccHHHHHHHhC------------HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 456666655543 355678999999997666432 333333 3457789999999999999976543
No 160
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=46.75 E-value=18 Score=39.95 Aligned_cols=50 Identities=28% Similarity=0.362 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCc-hHH--HHHHHHHhCCCcEEEEcc
Q 006152 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKH-EGK--LLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~-EG~--~La~eL~~~GI~vT~I~D 513 (658)
++|..| ..|..|.++||+..|+| |=+-++ |-. ..+++|.++|+.|.|-..
T Consensus 48 ~~S~iv-~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~~ 100 (352)
T PF13090_consen 48 SNSPIV-NALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGVP 100 (352)
T ss_dssp TT-HHH-HHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--T
T ss_pred CCCHHH-HHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCCC
Confidence 567777 56778888999998876 444333 333 336899999999887543
No 161
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=46.31 E-value=1.9e+02 Score=30.92 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=55.5
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-H---------HHHH
Q 006152 452 IRDG-DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYI 519 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A---------v~~~ 519 (658)
+..+ .+|+|.|.+.++..++......|. .-.|++ + +|.+.+...+ +...|+.+..+... . +-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIF-G-TPGYPVYERG--ALFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEE-c-CCCCcchHHH--HHhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 3444 799999999988666554444331 134444 4 5777765544 34578877766432 1 1122
Q ss_pred hhhccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
+.+-.++ |+-+ ..-|..|+ ..++-+|+.|++.+++
T Consensus 133 ~~~~~~~------i~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKI------VWIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEE------EEEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 2221222 2222 24578883 4456678889987665
No 162
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=46.29 E-value=2.4e+02 Score=30.21 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---------Cc--h---HH----HHHHHHHhC
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------KH--E---GK----LLLRRLVRK 504 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---------~~--E---G~----~La~eL~~~ 504 (658)
.+++.+.+++.+ ..|+.+|.+.+=..+...+.+.|.. ++.++|... .+ + |+ .|+++|.+.
T Consensus 19 L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 477788888864 6788888765433344445555632 334433221 10 0 11 334566654
Q ss_pred C--CcEEEEcc----hHHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccc-ccccc
Q 006152 505 G--LSCTYTHI----NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA-YKFHE 570 (658)
Q Consensus 505 G--I~vT~I~D----sAv~~~M-~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet-yKf~~ 570 (658)
. +.++.+.+ ..+..++ .+.|.||...|.+. .| ..+.-.|+.+++|||.+... -|+++
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCC
Confidence 4 34444422 1222333 36888877666442 22 34666789999999988665 34444
No 163
>PRK05939 hypothetical protein; Provisional
Probab=46.26 E-value=2.3e+02 Score=31.61 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=52.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHHHhCCCcEEEEcch---HHHHHhh-hccEEEEcc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvGA 530 (658)
..|++-+...++..+|......|. +|++.+ +.+-+ ..+...|...|+.++++... .+-..+. +...|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 345555445566666655544443 566644 44433 33445677889998888532 3333333 3444443
Q ss_pred eeEecCCCeecccchH----HHHHHHhhCCCCeEe
Q 006152 531 SSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~aNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
+ ...|..|.. .|+-+||+|+++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 344555533 466788999987776
No 164
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=46.04 E-value=2.4e+02 Score=31.25 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=50.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchHHHHHhh----hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~~M~----~Vd~VlvG 529 (658)
..|+|-+.+.++..+|......|. +|++.+ |.+.+. .+. ..+...|+.+.++.......+.. +..+|++-
T Consensus 76 ~av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le 151 (391)
T TIGR01328 76 AAVATSSGMGAIAATLLTILKAGD--HLISDE--CLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE 151 (391)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEec--CcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE
Confidence 345554445555555544443343 455533 545443 333 44667899888886543333333 33333321
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.-.-..|.++. --.|+-+||+++++++|
T Consensus 152 -~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 -TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112343332 23467778999998876
No 165
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=46.03 E-value=65 Score=34.74 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=61.7
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhc--cEEEEcceeEec
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV--TRVFLGASSVLS 535 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~V--d~VlvGAdaV~a 535 (658)
||..|.+--|..-|+++.. ..+.|+.+..+.. -+.-...+..++.+. |.||=-|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-----------------Ditd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAEL-----------------DITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccc-----------------cccChHHHHHHHHhhCCCEEEECcccccc
Confidence 6777766656566666553 5678887765541 122223344444432 555443322222
Q ss_pred CC--------CeecccchHHHHHHHhhCCCCeEeecccccccccc
Q 006152 536 NG--------TVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (658)
Q Consensus 536 NG--------~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~ 572 (658)
|+ -.+|-.|+..+|.+|+++|.+++-+..-|=|+..-
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 22 24889999999999999999999999999998654
No 166
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=45.71 E-value=1.7e+02 Score=32.63 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=51.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
.+++|.|.+.++..++....+.| -+|++. .|.+.| .++. ..+...|+.++++... .+...+. +.+.|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~G--d~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPD--DLIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 55666665566655555444333 345543 466655 3444 3345568888887532 2222332 44555543
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.++.. ..++-+|++++++|+|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111122444331 2577788889886654
No 167
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=45.67 E-value=1.9e+02 Score=31.92 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHHHHH-HhCCCcEEEEcc---hHHHHHhh-hccEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRL-VRKGLSCTYTHI---NAISYIIH-EVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La~eL-~~~GI~vT~I~D---sAv~~~M~-~Vd~Vlv 528 (658)
..+++|-|.+.++..++....+.| -+|++ ..|.+.| ..+...+ ...|+.+.++.. ..+...+. +..+|++
T Consensus 67 ~~v~~~~gg~~Ai~~~l~all~~G--D~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l 142 (382)
T TIGR02080 67 AGAVVTNTGMSAIHLVTTALLGPD--DLLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLI 142 (382)
T ss_pred CcEEEEcCHHHHHHHHHHHHcCCC--CEEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE
Confidence 346666666667766665554444 34444 3466665 3444444 445688887632 22333332 3444443
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
- .--...|.++. -..|+-+|+.+++.++|
T Consensus 143 ~-~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 143 E-TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred E-CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 2 11112244433 23677778889876654
No 168
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=45.60 E-value=1.3e+02 Score=32.37 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=67.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
|..+..=....|..+|+++.+.|.+.-|++.+.-+..+.++|.....+.|+ .++=-|.++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gi--rvlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKT--RLIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCCcccccccceeeecCCCCCC
Confidence 554444445555588999999998888999888776556777777777776 445555555554433322221222233
Q ss_pred CC--CeecccchHHHHHH--HhhCCCCeE
Q 006152 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (658)
Q Consensus 536 NG--~VvNKiGT~~lAl~--Ak~~~VPVy 560 (658)
-| ++++..|+...+++ ++..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 666777663
No 169
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=45.17 E-value=55 Score=39.37 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCcEEEEc
Q 006152 462 GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 462 g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vT~I~ 512 (658)
++|..| ..|..|+++|+..+|+|-=-.=..|+. ..+++|.++|+.|.|-.
T Consensus 369 ~~s~ii-~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 369 KDSPII-DALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred CCcHHH-HHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 356666 667888888999998875222222333 34578999999988843
No 170
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=45.08 E-value=1.2e+02 Score=31.52 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=59.2
Q ss_pred EEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCch---HHHHHHHHHhCCCcEEE-EcchHHHHHhhhccEEEEcce
Q 006152 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHE---GKLLLRRLVRKGLSCTY-THINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 457 vILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~E---G~~La~eL~~~GI~vT~-I~DsAv~~~M~~Vd~VlvGAd 531 (658)
.|..++.+ .....+|..+.+.....+++|=+ .|... ..++..++.. ...+.+ ..+..+..+|+.+|.|+.-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 34444442 34557788777766667776644 56322 2233344433 344444 4567889999999999643
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
|+ ++++=|-.+|+||+|+...+
T Consensus 207 ----nS---------tvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 ----NS---------TVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred ----CC---------HHHHHHHHcCCceEEecCcc
Confidence 33 47788889999999998765
No 171
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.05 E-value=1.8e+02 Score=32.76 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=51.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-H-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEcc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvGA 530 (658)
.|++-+.+.++..+|..+...| -+|++.. +.+.|... . ..+...|+.++++... .+-..+. ++..|++
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-- 154 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-- 154 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE--
Confidence 4444444456666665554444 3555543 44555432 2 4467889999888532 3333333 3444544
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~-aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+. ..|.++. -..|+-+||+|+++++|
T Consensus 155 esp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 ESIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2221 2243332 24577789999988776
No 172
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=44.97 E-value=2.5e+02 Score=31.20 Aligned_cols=96 Identities=20% Similarity=0.104 Sum_probs=44.9
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEcce
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGAS 531 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvGAd 531 (658)
+++.+.+.++...|....+.| -+|++.+ |.+.|.... ..+...|++++.+... .+...+. +...|++ ..
T Consensus 84 ~~~~sG~~Ai~~~l~~~l~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-es 158 (398)
T PRK07504 84 RATASGMAAVTAAILCQVKAG--DHVVAAR--ALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ES 158 (398)
T ss_pred eEecCHHHHHHHHHHHHhCCC--CEEEEcC--CchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-EC
Confidence 334333444433343333333 3455543 556555443 2244568877776422 2222222 3333333 11
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-....|.++. --.|+-+|++++++++|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 1222344433 34566678888887665
No 173
>PRK15005 universal stress protein F; Provisional
Probab=44.83 E-value=2.2e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=24.7
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvN-KiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|+|++|+++ +| +.. -+|+- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecch-HHHHHHhCCCCEEEe
Confidence 79999999873 33 322 24663 344577788999986
No 174
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=44.41 E-value=66 Score=30.67 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006152 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (658)
Q Consensus 478 gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~V 557 (658)
+...++--.+..|...|...+.-|.+.|++|.++. +|.|+++ |.....--...++-.|+++++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCC
Confidence 33344444456777888999999999999999988 4555544 432221223345557888999
Q ss_pred CeEeec
Q 006152 558 PVLVCC 563 (658)
Q Consensus 558 PVyV~a 563 (658)
|+++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 977644
No 175
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=44.34 E-value=1.6e+02 Score=25.45 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEE-EEc---c--hHHHHHhh--hccEEEEcceeEecCCCeec
Q 006152 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTH---I--NAISYIIH--EVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 470 vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~---D--sAv~~~M~--~Vd~VlvGAdaV~aNG~VvN 541 (658)
+++..++ ..|++|.+++ .++.|.+.||+|. .+. + ..+.-.++ ++|+||.=.+. .+....
T Consensus 5 ~~~~l~~--lG~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~~ 71 (90)
T smart00851 5 LAKRLAE--LGFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQPH 71 (90)
T ss_pred HHHHHHH--CCCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Ccceec
Confidence 3444444 3588888764 3577889999985 431 1 11333333 79999874321 133333
Q ss_pred ccchHHHHHHHhhCCCCeE
Q 006152 542 RVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 542 KiGT~~lAl~Ak~~~VPVy 560 (658)
+ -.+.+=-+|-.++||++
T Consensus 72 ~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 72 E-DGKALRRAAENIDIPGA 89 (90)
T ss_pred c-CcHHHHHHHHHcCCCee
Confidence 3 45677778999999975
No 176
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=44.25 E-value=1.1e+02 Score=34.40 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=61.1
Q ss_pred cCCCEEEeeCChHHHHHHHHH---HHH-cCCeeEEEEeCCCCCchHH-HHHHHHHhCCCcEEEEcchHHHH-----Hhh-
Q 006152 453 RDGDVLLTYGSSSAVEMILQH---AHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHINAISY-----IIH- 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~---A~e-~gk~f~ViV~ESRP~~EG~-~La~eL~~~GI~vT~I~DsAv~~-----~M~- 521 (658)
.+.++|.|-|-+....-+|+- +.. +.+.-++|+.... .... ..++.|...|.+|||+.-..=+. +.+
T Consensus 60 ~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~a 137 (386)
T COG1104 60 DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEA 137 (386)
T ss_pred CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHh
Confidence 456899999988665445553 222 2244567765432 2222 22477878899999997553222 222
Q ss_pred -hccEEEEcceeEecCCCeecccchHH----HHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~----lAl~Ak~~~VPVyV 561 (658)
+=|.++|- -+ .+=|-+||.| ++-+||+++++|.|
T Consensus 138 l~~~T~LVS--im----~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 138 LRPDTILVS--IM----HANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cCCCceEEE--EE----ecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 12333332 12 3457788865 88899999999987
No 177
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=44.17 E-value=4.6e+02 Score=28.66 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-hHHHH
Q 006152 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISY 518 (658)
Q Consensus 440 a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~ 518 (658)
+.+.+.+ ....+. |..|+.++.......+.+-+.+.|-...++++......+=.++-+.|.+....+..-.| ..+..
T Consensus 258 ~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~ 335 (398)
T PF00148_consen 258 AEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEE 335 (398)
T ss_dssp HHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHH
T ss_pred HHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHH
Confidence 4444444 334444 78888898876665666666667777766666655433223333444444222222223 24444
Q ss_pred Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 519 ~M~~--Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+++ .|.+| |+..-..+|+..++|++.++-
T Consensus 336 ~l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~~ 367 (398)
T PF00148_consen 336 LLEELKPDLLI----------------GSSHERYLAKKLGIPLIRIGF 367 (398)
T ss_dssp HHHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-SS
T ss_pred HHHhcCCCEEE----------------echhhHHHHHHhCCCeEEEeC
Confidence 4553 66553 344455678888888887643
No 178
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=43.66 E-value=72 Score=34.24 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=42.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCC-CCCchHHHHHHHHHhCCCcEEEEc---------chHHHHHhh--h
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH---------INAISYIIH--E 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~---------DsAv~~~M~--~ 522 (658)
-.||..|+++.++.+| .+.+.|. ..+|.++=| +|...+. ..+.|||+.++. +..+...|+ +
T Consensus 92 i~vl~Sg~g~nl~al~-~~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK13011 92 VLIMVSKFDHCLNDLL-YRWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESG 165 (286)
T ss_pred EEEEEcCCcccHHHHH-HHHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhC
Confidence 4677788888886655 4555554 456555433 6653332 567799998873 112233343 5
Q ss_pred ccEEEE-cceeEe
Q 006152 523 VTRVFL-GASSVL 534 (658)
Q Consensus 523 Vd~Vlv-GAdaV~ 534 (658)
+|.+++ |-.+|+
T Consensus 166 ~Dlivlagy~~il 178 (286)
T PRK13011 166 AELVVLARYMQVL 178 (286)
T ss_pred cCEEEEeChhhhC
Confidence 788766 333443
No 179
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.64 E-value=89 Score=34.57 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred HHHHhCCCcEEEEcch--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeEeecc
Q 006152 499 RRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCE 564 (658)
Q Consensus 499 ~eL~~~GI~vT~I~Ds--------Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~----~~VPVyV~ae 564 (658)
..|.+.||+|++|... .+-...++.+.|| ++.++....-.|+...+.++.. ...|+.-++-
T Consensus 248 ~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~ 320 (356)
T PLN02683 248 EILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAG 320 (356)
T ss_pred HHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEecc
Confidence 4555666666666432 3334455666664 5667777777899999998887 3567775543
No 180
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=43.59 E-value=2.5e+02 Score=32.63 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=66.8
Q ss_pred HHHHHhccCCCEEEeeCC---h--H-HHHHHHHHHHH---cC--CeeEEEEeCC-CC------CchH----------HHH
Q 006152 446 KHAVTKIRDGDVLLTYGS---S--S-AVEMILQHAHE---LG--KQFRVVIVDS-RP------KHEG----------KLL 497 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~---S--s-aV~~vL~~A~e---~g--k~f~ViV~ES-RP------~~EG----------~~L 497 (658)
+.|+.+|+||++|..-+. + . ++..+.+++.+ .| +.++++..-+ .+ ...| ...
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 456779999999988765 2 1 23333333322 12 2455554211 11 1001 122
Q ss_pred HHHHHhCC-CcEEEEcchHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 498 a~eL~~~G-I~vT~I~DsAv~~~M~-----~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+++.+.| +.++-+.-+.+...+. ++|.+|+=+...-.+|.+.=-..+.....+++.-+ .|+|-+
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~aAk-~VIvEV 156 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLELAD-KVIVEV 156 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHhCC-EEEEEE
Confidence 46666666 4555556677777775 58999999999999998765554444444444433 344433
No 181
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=43.46 E-value=34 Score=34.53 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCc
Q 006152 197 KAERRAIQEAQRAAKAAAKAEGIKTP 222 (658)
Q Consensus 197 kaerra~qe~qraakaa~k~~~~~~~ 222 (658)
-+|+.|.|++||++|.|+|.+...+.
T Consensus 103 laeakarv~a~r~~q~a~k~e~a~aa 128 (208)
T COG3109 103 LAEAKARVQAQRAEQQAKKREEAPAA 128 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccc
Confidence 37889999999999999998887743
No 182
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=43.29 E-value=92 Score=28.60 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhh--hccEEEEcc
Q 006152 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIH--EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~--~Vd~VlvGA 530 (658)
.||.+|++-- |..|..+..+. +.-+|||.-..|.... + -.+.-+.. ..+..+.+ ++|+||+|-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~------~----~~~~~~~~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAE------L----GKNVPIDITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGG------T----SEEE-S-TT-HHHHHHHHHHTTESEEEESS
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHh------h----ceecCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 6888888732 34455444444 4568999877654421 1 11211121 23333333 799999999
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
+.-+.+| ++=.-+..|||++
T Consensus 71 E~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 71 EAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTT----------HHHHHHHTT-CEE
T ss_pred hHHHHHH----------HHHHHHHCCCcEE
Confidence 9999999 6667777888875
No 183
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.28 E-value=2e+02 Score=33.29 Aligned_cols=112 Identities=20% Similarity=0.300 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHHHH
Q 006152 375 RDLTAKISSYVSFLIDCRPLSVSM-GNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERFI 433 (658)
Q Consensus 375 r~L~~~L~~~i~~L~~aRPtsVsm-gNAIr~lk~~I~~~--------------------~~~~~~~eaKe~L~e~Id~fi 433 (658)
..|.+.|..+-++...--|+|+.+ |||..-+-..++.- +.+.+.+|+.+...++-+.|+
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~~ 296 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKYR 296 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHHH
Confidence 356666766667777778999875 99987766665541 112367899988888888886
Q ss_pred HHHHHHHHHHHHHHHHHh---ccCCCEEEeeCCh-----------------HHHHHHHHHHHHcCC-eeEEEEeCCCC
Q 006152 434 NEKIILADRVIVKHAVTK---IRDGDVLLTYGSS-----------------SAVEMILQHAHELGK-QFRVVIVDSRP 490 (658)
Q Consensus 434 ~E~i~~a~~~Ia~~a~~~---I~dgdvILT~g~S-----------------saV~~vL~~A~e~gk-~f~ViV~ESRP 490 (658)
+. +.+.|..|...+ =..|-..+-|||+ .-|...|+-++-.|+ .||=.++-..|
T Consensus 297 ~~----a~~sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdp 370 (561)
T COG2987 297 KL----ARASMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVENAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDP 370 (561)
T ss_pred HH----HHHHHHHHHHHHHHHHHcCCeeeecchHHHHHHHhccccccccCCcchHHhhhhhhhcCcCCeeEEEecCCH
Confidence 43 667777775543 3567777777775 224444444444454 36655555544
No 184
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=42.94 E-value=4.2e+02 Score=27.75 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=45.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhhc----cEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEV----TRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~V----d~Vlv 528 (658)
+.|++.+.+..+..+|..+...| -.|++. .|.+...... +...|+++..+.. ..+-..+..- .++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~g--d~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKG--DLILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCC--CEEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 44444444555545555443333 244443 3555443333 3446777776642 2233334321 23333
Q ss_pred cceeEecCCCeecccc----hHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiG----T~~lAl~Ak~~~VPVyV 561 (658)
-+.+.|..| -..|+-+|+.|++.+++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 123344444 24567788999987665
No 185
>PRK08175 aminotransferase; Validated
Probab=42.68 E-value=71 Score=34.86 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-H------HHHHhh--
Q 006152 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYIIH-- 521 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A------v~~~M~-- 521 (658)
+... .+|+|.|....+..++....+.|. +|++. +|.+.+..... ...|+.+.++... . +-..++
T Consensus 88 ~~~~~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 88 IDPESEAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred CCCCCcEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhc
Confidence 3334 588998888877555554444443 44443 67666654443 3468877776421 1 122222
Q ss_pred --hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 522 --EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++..|++ + ..-|..|+ ..++-+|++|++.+++
T Consensus 162 ~~~~~~v~i-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 162 YPKPKMMIL-------G-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred cCCceEEEE-------e-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 2333333 2 23456664 5777789999996664
No 186
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=42.17 E-value=1.8e+02 Score=28.11 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhC-CCcEEEEcc------hHHHHHhh--hccEEEEcceeEecCCCe
Q 006152 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNGTV 539 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~-GI~vT~I~D------sAv~~~M~--~Vd~VlvGAdaV~aNG~V 539 (658)
.+++...+.=..|++|.+++ .++.|.+. ||+|+.+.. ..+..+++ ++|+||-=.|- +|.-
T Consensus 21 ~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp---~~~~ 89 (142)
T PRK05234 21 AWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDP---LTAQ 89 (142)
T ss_pred HHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCC---CCCC
Confidence 55555544411488888774 46778888 999987631 22344443 79999753321 1222
Q ss_pred ecccchHHHHHHHhhCCCCeEeecccc
Q 006152 540 CSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
......+.|=-+|-.|+||++-.-.+-
T Consensus 90 ~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 90 PHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred cccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 213345677778999999998765443
No 187
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=42.13 E-value=2.3e+02 Score=31.77 Aligned_cols=103 Identities=23% Similarity=0.248 Sum_probs=58.1
Q ss_pred ccCCCEEEeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHH---HHhh-hccE
Q 006152 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAIS---YIIH-EVTR 525 (658)
Q Consensus 452 I~dgdvILT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~---~~M~-~Vd~ 525 (658)
+..|.-.+.++.+. ++...|....+.|. +|++.. .-|..-.++. +.|...||.++++....+. ..++ ++..
T Consensus 67 Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd--~iv~~~-~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~ 143 (386)
T PF01053_consen 67 LEGGEDALLFSSGMAAISAALLALLKPGD--HIVASD-DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKL 143 (386)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHS-TTB--EEEEES-SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEE
T ss_pred hhcccceeeccchHHHHHHHHHhhcccCC--ceEecC-CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceE
Confidence 44566566666654 45455655555554 455543 4466666777 4588899999999664443 3443 5666
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCC-CCeEe
Q 006152 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~-VPVyV 561 (658)
|++-. . .|= .+.-.=-..++-+||.+| ++++|
T Consensus 144 v~~Es--p-sNP-~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 144 VFLES--P-SNP-TLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEEES--S-BTT-TTB---HHHHHHHHHHTTT-EEEE
T ss_pred EEEEc--C-CCc-ccccccHHHHHHHHHHhCCceEEe
Confidence 66542 2 121 122222345777899998 77776
No 188
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=42.04 E-value=36 Score=35.93 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=32.4
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La 498 (658)
+||..|.++-+ .+++.+++.|..++||+++..|...|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57777777666 778888887778999999999888776543
No 189
>PTZ00357 methyltransferase; Provisional
Probab=41.80 E-value=2.8e+02 Score=34.02 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=48.3
Q ss_pred EEEee--CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh----------CCCcEEEEcchHHHHHhh---
Q 006152 457 VLLTY--GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR----------KGLSCTYTHINAISYIIH--- 521 (658)
Q Consensus 457 vILT~--g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~----------~GI~vT~I~DsAv~~~M~--- 521 (658)
+|++. |++-+|..+|+.+.+.|.+++||++|=.|..-=.- ...+.+ .|-.|++|...|=.+-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~t-llr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFT-RMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHH-HHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46666 55678999999999999999999999886532111 111111 155699998877766443
Q ss_pred ----------hccEEE
Q 006152 522 ----------EVTRVF 527 (658)
Q Consensus 522 ----------~Vd~Vl 527 (658)
++|.||
T Consensus 782 ~s~~~P~~~gKaDIVV 797 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIV 797 (1072)
T ss_pred ccccccccccccceeh
Confidence 588886
No 190
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=41.41 E-value=1.4e+02 Score=32.22 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=66.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
|..+..-....|..+|+++.+.|.+.-|++.+.-+....++|.+...+.|+ .++=-|.++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 665555556666688999999998888888887666555677776777765 444445555444332222221222333
Q ss_pred CC--CeecccchHHHHHH--HhhCCCCeE
Q 006152 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (658)
Q Consensus 536 NG--~VvNKiGT~~lAl~--Ak~~~VPVy 560 (658)
-| .+++..|++..+++ ++..++-|.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 56 37899998888875 677787764
No 191
>PRK08618 ornithine cyclodeaminase; Validated
Probab=41.34 E-value=2.2e+02 Score=30.73 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEEcchHHHHHhhhccEEEEcce-
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS- 531 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I~DsAv~~~M~~Vd~VlvGAd- 531 (658)
+..+|+.+|.+..-...+..+......-+|+|. +|-.....+++.+|.+ .|+++....| ...++.++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccCC
Confidence 567899999987655555443322222345555 4433446677777764 4777665544 2345578999887421
Q ss_pred ------eEecCCCeecccchH
Q 006152 532 ------SVLSNGTVCSRVGTA 546 (658)
Q Consensus 532 ------aV~aNG~VvNKiGT~ 546 (658)
..+..|..++-+|++
T Consensus 203 ~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 203 KTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCcchHHhcCCCcEEEecCCC
Confidence 234566666666664
No 192
>PRK08114 cystathionine beta-lyase; Provisional
Probab=41.34 E-value=2.8e+02 Score=31.12 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=53.5
Q ss_pred ccCCCEEEeeCChH-HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcc---hHHHHHhhhccEE
Q 006152 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI---NAISYIIHEVTRV 526 (658)
Q Consensus 452 I~dgdvILT~g~Ss-aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~D---sAv~~~M~~Vd~V 526 (658)
+..|.-.+.+++++ ++..+|...++.|. +|++.. ..+..-.++. +.|.+.||+++++.. ..+...+..-+++
T Consensus 74 LEg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~~-~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~Trl 150 (395)
T PRK08114 74 LEGGAGCALYPCGAAAVANAILAFVEQGD--HVLMTG-TAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKV 150 (395)
T ss_pred HhCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEeC-CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceE
Confidence 44554444444454 46555655555454 455553 3444445555 557788999998852 3344444432333
Q ss_pred EEcceeEecCCCeecccch----HHHHHHHhhCC--CCeEe
Q 006152 527 FLGASSVLSNGTVCSRVGT----ACVAMVAYGFH--IPVLV 561 (658)
Q Consensus 527 lvGAdaV~aNG~VvNKiGT----~~lAl~Ak~~~--VPVyV 561 (658)
|. .+ ++.|..|. ..|+-+||.++ ++++|
T Consensus 151 V~-~E------tpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 151 VF-LE------SPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EE-EE------CCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 31 11 23344433 34677888874 77665
No 193
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=41.25 E-value=1.1e+02 Score=30.38 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=46.4
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC--cEEEEcchHHHHHh---hhcc
Q 006152 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYII---HEVT 524 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI--~vT~I~DsAv~~~M---~~Vd 524 (658)
-+..|++||-+|.++-.. .+..|...+..-+|+.+|-.|.. .+++ +.+...|+ +++++..++..++. ...|
T Consensus 37 ~~~~~~~vlDlG~GtG~~-s~~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSV-TVEASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHH-HHHHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 366889999999987431 12223333555689999988763 4445 34556674 57777655543322 2466
Q ss_pred EEEEc
Q 006152 525 RVFLG 529 (658)
Q Consensus 525 ~VlvG 529 (658)
.||+|
T Consensus 114 ~V~~~ 118 (198)
T PRK00377 114 RIFIG 118 (198)
T ss_pred EEEEC
Confidence 66664
No 194
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=41.23 E-value=17 Score=38.26 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=22.2
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 521 ~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.++|.+++..|....+ . ...+...+.++++|+|...+.+
T Consensus 183 ~~~da~~~~~~~~~~~-----~--~~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDS-----N--FEAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp TT-SEEEE-S-HHHHH-----T--HHHHHHHCCCTT--EEESSHHH
T ss_pred ccCCEEEEECCcchHh-----H--HHHHHHHHHhcCCCEEECCHHH
Confidence 4688888887654332 1 2226778899999999876543
No 195
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=41.22 E-value=4e+02 Score=27.60 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=33.0
Q ss_pred EeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
+.-++-..+-.++++.+.+.|+++..|++ .-+.+.+.+|.+|.-
T Consensus 182 iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 182 ISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 33444445666777889999999999997 456777789998863
No 196
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=40.84 E-value=2.3e+02 Score=25.24 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=36.8
Q ss_pred EEEEeC-CCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 482 RVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 482 ~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
-||+.. ++-..+-.++++.+.+.|+++..|+++.-..+-+.+|.+|.-.
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 344333 4444456667789999999999999998888888899888644
No 197
>PRK10537 voltage-gated potassium channel; Provisional
Probab=40.66 E-value=4.7e+02 Score=29.41 Aligned_cols=93 Identities=10% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh-----hccEEEEc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~-----~Vd~VlvG 529 (658)
.+.|+..|++..-..+++...++|..+. |+|... ..+....|.++..- |..=-..++ +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vv--VId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVT--VIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEE--EEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 5778899999887777777776665544 444221 13444567776444 433334443 66777664
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCC--CCeEeecccc
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFH--IPVLVCCEAY 566 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~--VPVyV~aety 566 (658)
.+ +..-...+++.||+.+ +.+++.+...
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 43 2344567889999987 4455555443
No 198
>PRK06836 aspartate aminotransferase; Provisional
Probab=40.43 E-value=2.7e+02 Score=30.41 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (658)
+....+|+|.|.+..+..++....+.| -.|++.+ |.+.+.. ..+...|+++.++.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~ 148 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVP 148 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEe
Confidence 445678888888888765555443333 3555543 7766643 33456799888874
No 199
>PRK05967 cystathionine beta-lyase; Provisional
Probab=40.26 E-value=2.5e+02 Score=31.49 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=56.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
+.|+|.+-..++..++....+.|. +|++. .|.+.|-. +. ..|...||.++++.. ..+...+. +...|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 567777766667666666555454 56665 46666644 34 456778999998854 23444453 34444443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. .. | -+....=-..|+-+||+++++|+|
T Consensus 157 s--Ps-N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 A--PG-S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred C--CC-C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 2 11 1 122222234577788899987665
No 200
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=40.25 E-value=2.6e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=35.8
Q ss_pred HHHhCCCcEEEEcc---h---HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 500 RLVRKGLSCTYTHI---N---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 500 eL~~~GI~vT~I~D---s---Av~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.+.|++++.+.. + ++..+.. ++|.|++|...=...+. --.|+.... +.++-++||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~--~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD--RLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc--eecCchHHH-HHhcCCCCEEEe
Confidence 34567988876642 2 2333333 59999999985332211 224664433 457788999885
No 201
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.23 E-value=2e+02 Score=32.30 Aligned_cols=97 Identities=24% Similarity=0.331 Sum_probs=51.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
..++|-+.+.++..+|..+.+.|. +|++.+ +.+.| ..+. ..|...|++++++.- ..+-..+. ++..|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 344444444456555555544443 455544 34433 2233 334456888877742 33444443 4555655
Q ss_pred ceeE-ecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSV-LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV-~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+ -..|.++. -..++-+|++|+++++|
T Consensus 150 -esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 -ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred -eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222 23444443 26677789999988765
No 202
>PRK07550 hypothetical protein; Provisional
Probab=40.18 E-value=2.6e+02 Score=30.27 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=52.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-------HHHHHhh---
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~~M~--- 521 (658)
+....+++|.|.+.++..++....+.| -+|+| ++ |.+-+... .+...|+.+..+... .+..+-+
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv-~~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAG--DEVIL-PL-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCC--CEEEE-cC-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 445678889888877755554443333 34444 43 66655433 345678877666431 1222222
Q ss_pred -hccEEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvG-AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...|++- .+ -..|.+++.-=--.++-+|++|++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23333321 10 1113333322244577788999987654
No 203
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=40.12 E-value=1.6e+02 Score=29.98 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=61.9
Q ss_pred hccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcchHHHHHhh---hccEE
Q 006152 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH---EVTRV 526 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~DsAv~~~M~---~Vd~V 526 (658)
-+++|++++.+|.++--. .+.-| ..+.+-+||.+|..+ +..+++ +.+.+.|++-..+.-.-+.-+++ +.|.+
T Consensus 31 ~~~~g~~l~DIGaGtGsi-~iE~a-~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSI-TIEWA-LAGPSGRVIAIERDE--EALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred CCCCCCEEEEeCCCccHH-HHHHH-HhCCCceEEEEecCH--HHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE
Confidence 467899999999876310 13333 458888999999764 456677 78899998755555555555554 46666
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 527 lvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|+| |+ -+--+-...++..-+.+=.+++
T Consensus 107 FIG-------Gg-~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 107 FIG-------GG-GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred EEC-------CC-CCHHHHHHHHHHHcCcCCeEEE
Confidence 666 55 4545555544443333333443
No 204
>PRK07050 cystathionine beta-lyase; Provisional
Probab=40.03 E-value=3.7e+02 Score=29.83 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=48.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcc---hHHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D---sAv~~~M~-~Vd~VlvG 529 (658)
.+++|.|.+.++..+|.... ++.-+|++.+ |.+.+-. +. ..+...|+.++++.. ..+...+. +...|++-
T Consensus 82 ~~l~~~sgt~Ai~~~l~al~--~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le 157 (394)
T PRK07050 82 HALLQPSGLAAISLVYFGLV--KAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE 157 (394)
T ss_pred eEEEeccHHHHHHHHHHHHh--CCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 44555555555654454443 3334566643 4454433 33 345667888887742 23444443 33333221
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. .+.-+....=-..|+-+|+.++++++|
T Consensus 158 --~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 --A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred --C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 0 111112222234566778888887765
No 205
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=39.92 E-value=1.9e+02 Score=32.34 Aligned_cols=96 Identities=21% Similarity=0.271 Sum_probs=52.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~~M~ 521 (658)
+...++++|.|.+.++..++....+.| -+|++. +|.+........ ..|+.+.++.. ..+-.++.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~G--d~Vlv~--~P~y~~y~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPG--ANILLP--RPGYPLYEARAV--FSGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCCCccHHHHHH--HcCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 445688999999988866665554333 355554 466655433322 34666665531 22222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
+..++ ++.|- -|..|+ ..|+-+|++|++++++
T Consensus 189 ~~~~~i------~i~~P--~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAM------VIINP--NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEE------EEeCC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 22232 22332 256655 3455668889977664
No 206
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=39.87 E-value=98 Score=35.39 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=48.2
Q ss_pred HHHHHHHHhccC------CCEEEeeCChH--HHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHH-HhCCC--cEEEE
Q 006152 443 VIVKHAVTKIRD------GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGL--SCTYT 511 (658)
Q Consensus 443 ~Ia~~a~~~I~d------gdvILT~g~Ss--aV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL-~~~GI--~vT~I 511 (658)
+|.+...+.+.. +.+||..|.++ ++..+++.+.+.+...+||.+|-.|.- ...++++ ...|. .|++|
T Consensus 169 AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A--~~~l~~~v~~n~w~~~V~vi 246 (448)
T PF05185_consen 169 AIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA--VVTLQKRVNANGWGDKVTVI 246 (448)
T ss_dssp HHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH--HHHHHHHHHHTTTTTTEEEE
T ss_pred HHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH--HHHHHHHHHhcCCCCeEEEE
Confidence 344444445543 46899998776 454556666667889999999987642 1222343 45554 57887
Q ss_pred cchHHHHHhh-hccEEE
Q 006152 512 HINAISYIIH-EVTRVF 527 (658)
Q Consensus 512 ~DsAv~~~M~-~Vd~Vl 527 (658)
...+=-.-.+ +||.+|
T Consensus 247 ~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 247 HGDMREVELPEKVDIIV 263 (448)
T ss_dssp ES-TTTSCHSS-EEEEE
T ss_pred eCcccCCCCCCceeEEE
Confidence 7655444444 566665
No 207
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=39.79 E-value=4.8e+02 Score=27.62 Aligned_cols=75 Identities=9% Similarity=0.128 Sum_probs=40.6
Q ss_pred CCCEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH--HHHHHHHhCCCcEEEEcch-HHHHHhh---h
Q 006152 454 DGDVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHIN-AISYIIH---E 522 (658)
Q Consensus 454 dgdvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~--~La~eL~~~GI~vT~I~Ds-Av~~~M~---~ 522 (658)
.+.+|+-.|. ++++..+...+...+...+|.++...++.-|. .|...-...|+++..+.+. .+...+. .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRD 272 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccC
Confidence 4556666654 46665555555443123566666666766444 2223334468888766542 3444444 4
Q ss_pred ccEEEE
Q 006152 523 VTRVFL 528 (658)
Q Consensus 523 Vd~Vlv 528 (658)
.|.||+
T Consensus 273 ~d~vli 278 (282)
T TIGR03499 273 KDLILI 278 (282)
T ss_pred CCEEEE
Confidence 666665
No 208
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.69 E-value=56 Score=36.82 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=45.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEcceeE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAdaV 533 (658)
..||.+|.+--=..+...+.+.+..-.||+ -|.+.|....... ..+++.+....++..+.+ ++|.|++|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 689999988543345566666666668887 5666564321111 112222333345555555 499999998776
Q ss_pred ecCC
Q 006152 534 LSNG 537 (658)
Q Consensus 534 ~aNG 537 (658)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 6544
No 209
>PLN02187 rooty/superroot1
Probab=39.68 E-value=2.8e+02 Score=31.43 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=53.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---h-------HHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---s-------Av~~~M~ 521 (658)
+...++++|.|.+.++..++....+.| -+|+|.+ |.+.+... .+...|+.+..+.. . .+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 556688999999888866665554333 3455543 66665433 24456777766532 1 1212222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..+|++--=. -..|.++++-=-..|+-+|+.|++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233322100 1223333333334566678888876653
No 210
>PRK10481 hypothetical protein; Provisional
Probab=39.34 E-value=4.1e+02 Score=27.77 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=50.9
Q ss_pred HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----HHHHHhhhcc-EEEEcceeEecCCCeecccch
Q 006152 471 LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYIIHEVT-RVFLGASSVLSNGTVCSRVGT 545 (658)
Q Consensus 471 L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----Av~~~M~~Vd-~VlvGAdaV~aNG~VvNKiGT 545 (658)
+..|.-.|++|-|++..- -++.+..++..+.|+++++...+ ....+..-+. ..--|||.|+-++.=++.
T Consensus 122 lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~--- 195 (224)
T PRK10481 122 LVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ--- 195 (224)
T ss_pred HHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH---
Confidence 444555688999997431 24556667777779998877622 1111111111 112466666666554443
Q ss_pred HHHHHHHhhCCCCeEe
Q 006152 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
-..+.+.+..++||+-
T Consensus 196 ~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHHHHCcCEEc
Confidence 4477899999999984
No 211
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=39.30 E-value=3.7e+02 Score=26.06 Aligned_cols=43 Identities=7% Similarity=-0.117 Sum_probs=31.9
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
|.--.+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 3333455566788889999999999887777777788887643
No 212
>PRK12320 hypothetical protein; Provisional
Probab=38.91 E-value=59 Score=39.28 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=57.0
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEE--EcchHHHHHhhhccEEEEcceeE
Q 006152 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~--I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.||..|.+--+.. ++..+.++| .+|++++..+.. +...++.+.. +.|..+..++.++|.||-=|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 4777776544433 334455555 577777654321 1112322211 12344445566788888766432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeeccc
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..+..-.|-.||..+.-+|+++++.++.+...
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22222368899999999999999987776644
No 213
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=38.76 E-value=1.2e+02 Score=33.19 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=65.9
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCcEEEEcchHHHHHhhhccEEEEcc--ee
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGA--SS 532 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~DsAv~~~M~~Vd~VlvGA--da 532 (658)
|..+.+=-...+...+.+|.+.|.+.-|+++|.-|...+.++.+.+. +.| +.+|=-|..+.+-+.. ..+|. .-
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g--~rliGPNc~Gii~p~~--~~~gi~p~~ 165 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNK--TRLIGPNCPGIIKPGE--CKIGIMPGH 165 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCC--CEEECCCCceEEcchh--hccccCCcC
Confidence 55555555566668889999999999999999999988877774443 244 4566666666554432 12232 12
Q ss_pred EecCC--CeecccchHHHHHH--HhhCCCCeEe
Q 006152 533 VLSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (658)
Q Consensus 533 V~aNG--~VvNKiGT~~lAl~--Ak~~~VPVyV 561 (658)
++.-| +++++.||+...++ +...++-|--
T Consensus 166 ~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~ 198 (317)
T PTZ00187 166 IHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQST 198 (317)
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 33346 57999997766654 5556655543
No 214
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=38.75 E-value=2.2e+02 Score=29.51 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=54.4
Q ss_pred HHHHhccCCCEEEeeCCh--HHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhc
Q 006152 447 HAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (658)
Q Consensus 447 ~a~~~I~dgdvILT~g~S--saV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~V 523 (658)
.++++|+||++|..=|+. ..=..++.+..++| +++++|-........| ...|...|. |
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~----------------V 71 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ----------------V 71 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------E
Confidence 455689999999988764 22223444445556 5688886443221122 234444552 2
Q ss_pred cEEEEcc---------eeEecCCCe---ecccchHHHHHHHhhCCCCeEee
Q 006152 524 TRVFLGA---------SSVLSNGTV---CSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VlvGA---------daV~aNG~V---vNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+++.|- ...+.+|.+ ...-||..-.+-|-..|+|++..
T Consensus 72 kr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 72 RKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred eEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 2222220 011112222 23678999999999999998764
No 215
>PRK08462 biotin carboxylase; Validated
Probab=38.57 E-value=60 Score=36.29 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=45.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHHhCCCc---EEEEcchHHHHHhh--hccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLS---CTYTHINAISYIIH--EVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~~~GI~---vT~I~DsAv~~~M~--~Vd~Vlv 528 (658)
..||..+.+..-..+++.|.+.|. +|+++.+.+.. .+..++-+....|-. -.|+....+-.+.+ ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGK--EAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 579999999876689999998774 46666554443 444444221111111 13332233333333 6899998
Q ss_pred cceeEecCC
Q 006152 529 GASSVLSNG 537 (658)
Q Consensus 529 GAdaV~aNG 537 (658)
|.+.+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544444
No 216
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=38.49 E-value=41 Score=30.88 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCcEEEEcc--hHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 496 LLLRRLVRKGLSCTYTHI--NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 496 ~La~eL~~~GI~vT~I~D--sAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
+|..+|.+.|..+..+.. .+...+.. .+.+|++..| +.-.....-..-.+-.+.+++||+++.+..
T Consensus 8 ~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 8 ELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 556788888988888864 44555544 7899999888 111111111222234456899999999854
No 217
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.48 E-value=1.9e+02 Score=33.08 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=54.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcce
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAd 531 (658)
+..|..|+.+|.+..=...++.++..| .+|++.|.++. + ...|.+.|+.+....+ . ...+..+|.||+..
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 446789999998754224445555555 57888887653 1 3346777885532212 1 22356778776643
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
| +- . +..+-..|++.+|||+-
T Consensus 79 -----G-i~-~--~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 -----G-FR-P--TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred -----C-CC-C--CCHHHHHHHHCCCcEee
Confidence 3 11 1 34566778889999984
No 218
>PRK05764 aspartate aminotransferase; Provisional
Probab=38.30 E-value=2.5e+02 Score=30.30 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=50.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M~ 521 (658)
+..+.+++|.|.+.++..++..+...|. +|++ ++ |.+.+.. ..+...|+++..+... .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3445678888887777655555544343 3444 33 5554432 2334568877766421 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
++..|++- ..-|..|+. .++-+|+.|++.++|
T Consensus 163 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN--------SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333321 134555654 456678888887765
No 219
>PRK06108 aspartate aminotransferase; Provisional
Probab=37.89 E-value=2.9e+02 Score=29.56 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=52.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-----------HHHHHh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------AISYII 520 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-----------Av~~~M 520 (658)
+....+++|.|.+.++..++....+.| -+|++. .|.+.+.. ..+...|+.+..+... .+-..+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPG--DEVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 445578888888888765555444333 345553 35554433 3345678887776432 111222
Q ss_pred h-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 521 H-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
. ++.+|++ + ..-|..|+. .++-+|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 1 2333333 2 234666753 366678888886654
No 220
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=37.71 E-value=3.7e+02 Score=28.14 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=52.4
Q ss_pred CEE-EeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--------------hHHHHHh
Q 006152 456 DVL-LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (658)
Q Consensus 456 dvI-LT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------------sAv~~~M 520 (658)
.++ +|-|.+.++..+|..+.. +.-+|++. ||.+.... ..+...|+.+.++.. ..+-..+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~--~gd~Vlv~--~~~h~s~~--~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCG--PGDKILID--RNCHKSVI--NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCC--CCCEEEEe--CCchHHHH--HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 466655556555554443 33355554 45554433 233446776666521 2233344
Q ss_pred h---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 521 H---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 521 ~---~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
. ++..|++-.. ...|.++. --.++-+|+.|+++++|=.
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livDe 190 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVDE 190 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEEC
Confidence 3 3556666432 23565554 3468888999999888743
No 221
>PRK08912 hypothetical protein; Provisional
Probab=37.58 E-value=3.7e+02 Score=29.11 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=50.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---------hHHHHHhh-hccE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~~M~-~Vd~ 525 (658)
++|+|.|.+.++..++....+.| -+|++.+ |.+.+... .+...|+.+..+.. ..+-..+. ++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPG--DEVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 78999999988865555444333 3555544 66655443 34566777665542 11111221 3333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeE
Q 006152 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVy 560 (658)
|++ + ..-|..|+. .++-+|++|++.++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAI 196 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEE
Confidence 332 2 335677753 25667888887544
No 222
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=37.45 E-value=3.1e+02 Score=31.43 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=65.8
Q ss_pred hcc--CCCEEEeeCChHHHHHHHHHHHH-c--CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh----
Q 006152 451 KIR--DGDVLLTYGSSSAVEMILQHAHE-L--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH---- 521 (658)
Q Consensus 451 ~I~--dgdvILT~g~SsaV~~vL~~A~e-~--gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~---- 521 (658)
+|. +.|+|+|-|-.....-+|+.... . +.+-+|+-+.+.-...+. -.+.|.+.|+.+||++-.--+.+.-
T Consensus 97 lInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~-s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~ 175 (428)
T KOG1549|consen 97 LINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLD-SCRALQEEGLEVTYLPVEDSGLVDISKLR 175 (428)
T ss_pred HhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhH-HHHHHHhcCeEEEEeccCccccccHHHHH
Confidence 553 34677777776666556655332 2 223367766665443321 2478899999999998663333221
Q ss_pred ---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 ---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ---~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+-+-.+++.+.|..-=++++.+ --|..+|++.+|.|+|
T Consensus 176 ~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 176 EAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred HhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 3466777777776554444443 3477889999996665
No 223
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=37.35 E-value=18 Score=40.47 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccccccc
Q 006152 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 516 v~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
+-..+..+|.||.|-=++ |.....--..+.+|-+|+.|+|||+++|.....+
T Consensus 278 l~~~l~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERLEDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHCCC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHhcCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 355667899999997654 2223333345667888999999999999976443
No 224
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.15 E-value=2.7e+02 Score=25.86 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=27.1
Q ss_pred EEEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHHHh
Q 006152 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVR 503 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL~~ 503 (658)
+|.||.....++..|....++. ..|+|+|+|.....+-.+.++++..
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~ 50 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED 50 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh
Confidence 3556666666667676665543 3477777765544444555554444
No 225
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=37.06 E-value=2.7e+02 Score=30.33 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=53.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HH-HHHhhhc
Q 006152 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AI-SYIIHEV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av-~~~M~~V 523 (658)
.+++|.|.+.++..+++...+. |..-.|+|. .|.+.+...+ +...|+++..++.. ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 6888999998886655554443 223445553 6877766544 33467777766421 12 1112244
Q ss_pred cEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeE
Q 006152 524 TRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
.++++ + .--|..|+ -.++-+|+.|++.++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEE
Confidence 44443 2 34577774 456667888887654
No 226
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=37.01 E-value=56 Score=30.26 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=56.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeE-EEEeCCCC-CchHHHHHHHHH--hCCCcEEEEcchHHHHHhhhccEEEEccee
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFR-VVIVDSRP-KHEGKLLLRRLV--RKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~-ViV~ESRP-~~EG~~La~eL~--~~GI~vT~I~DsAv~~~M~~Vd~VlvGAda 532 (658)
.|+.+|++--+.+.|.++..+...++ |-+++.++ ...|..+...+. ..|++++ ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvI----- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVI----- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEE-----
Confidence 57888994444455555555556666 45667776 456655543222 4455544 44566666688664
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 533 V~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
++-+.-+++..+-.|.+|++|+++.+.-+
T Consensus 73 -----DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 73 -----DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -----EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -----EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 23467778888888888999999986544
No 227
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=36.87 E-value=3.4e+02 Score=32.19 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHhccCCCEEEeeCChH--HHHHHHHHHH-Hc--------------------CC-eeEEEEeCCCCCchHHHHHHH
Q 006152 445 VKHAVTKIRDGDVLLTYGSSS--AVEMILQHAH-EL--------------------GK-QFRVVIVDSRPKHEGKLLLRR 500 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~Ss--aV~~vL~~A~-e~--------------------gk-~f~ViV~ESRP~~EG~~La~e 500 (658)
.+.++++|.+-..|..+|.+. .+...+..-. .. ++ ..-+++.-++-..+-.++++.
T Consensus 458 l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~ 537 (638)
T PRK14101 458 VEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDV 537 (638)
T ss_pred HHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 345667787778888887643 2222121111 11 11 222333445545566777889
Q ss_pred HHhCCCcEEEEcchHHHHHhhhccEEEE
Q 006152 501 LVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 501 L~~~GI~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+.+.|+++..|+++ -+.+.+.+|.+|.
T Consensus 538 Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 538 AMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred HHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 99999999999996 5777788998873
No 228
>PLN02242 methionine gamma-lyase
Probab=36.83 E-value=3.1e+02 Score=30.77 Aligned_cols=99 Identities=24% Similarity=0.213 Sum_probs=49.1
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHh-CCCcEEEEcc---hHHHHHhhh-ccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVR-KGLSCTYTHI---NAISYIIHE-VTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~-~GI~vT~I~D---sAv~~~M~~-Vd~Vlv 528 (658)
..++|-|-..++..+|....+.|. +|++.+ |.+.+. .+. ..+.+ .|+.++++.. ..+-..+.. -+++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 445555555566555555544443 555443 555444 333 23333 7888877643 233334432 133333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-..---..|.++. --.|+-+|++|+++++|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 1111112333331 13566788999987776
No 229
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=36.47 E-value=3.7e+02 Score=28.83 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc---chHHHHHhhh----ccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHE----VTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---DsAv~~~M~~----Vd~Vlv 528 (658)
..|++.+.+.+...++..+.+.|. .|++ + .|.+.+......+ .|+++..+. ...+-..+.+ -+++|+
T Consensus 95 ~~i~~~sG~~a~~~a~~~~~~~gd--~vi~-~-~~~~~~~~~~~~~--~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 95 AALVFQSGFNTNQGVLSALLRKGD--IVLS-D-ELNHASIIDGLRL--TKATKKIYKHADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred cEEEECcHHHHHHHHHHHhCCCCC--EEEE-E-ccccHHHHHHHHh--cCCceEEeCCCCHHHHHHHHHhhccCCCeEEE
Confidence 334443335666555555544443 4443 3 3666554333333 466654432 2223333332 133333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
...+....+.+.. -..++-+|+.|++.+++
T Consensus 169 -~~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 169 -TDGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred -EecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 1122222112222 24577788999987665
No 230
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.37 E-value=1.7e+02 Score=29.89 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=49.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH-----HHHHhhhccEEEEc-ceeEecCCCeecccch-HHHHHHHhh
Q 006152 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYIIHEVTRVFLG-ASSVLSNGTVCSRVGT-ACVAMVAYG 554 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-----v~~~M~~Vd~VlvG-AdaV~aNG~VvNKiGT-~~lAl~Ak~ 554 (658)
+|+|++..+.+.+ .+...|.+.|+.+.++.... ...++.+.|.+|++ -. |+ ..+.+. ..+.--+..
T Consensus 2 ~ilv~d~~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp-----~~-~~~~~~~~~~i~~~~~ 74 (214)
T PRK07765 2 RILVVDNYDSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGP-----GT-PERAGASIDMVRACAA 74 (214)
T ss_pred eEEEEECCCcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCC-----CC-hhhcchHHHHHHHHHh
Confidence 6788888876666 36688899999999887543 22234578888773 21 22 122332 123334455
Q ss_pred CCCCeEeecccccc
Q 006152 555 FHIPVLVCCEAYKF 568 (658)
Q Consensus 555 ~~VPVyV~aetyKf 568 (658)
+++|++-+|=-+-+
T Consensus 75 ~~~PiLGIC~G~Ql 88 (214)
T PRK07765 75 AGTPLLGVCLGHQA 88 (214)
T ss_pred CCCCEEEEccCHHH
Confidence 78999977754433
No 231
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=36.33 E-value=4.4e+02 Score=29.02 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHh----ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--
Q 006152 440 ADRVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-- 513 (658)
Q Consensus 440 a~~~Ia~~a~~~----I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-- 513 (658)
..+.|+++.... +....+|+|.|.+.++..+++...+.|. .|++. .|.+.+.... +...|+.+..+..
T Consensus 79 lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~--~P~y~~~~~~--~~~~g~~~~~~~~~~ 152 (409)
T PLN00143 79 ARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLP--RPGFPDVETY--AIFHHLEIRHFDLLP 152 (409)
T ss_pred HHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEc--CCCCcCHHHH--HHHcCCEEEEEeccC
Confidence 344555554332 4455788999888888655554443343 44443 3666554333 3345766665531
Q ss_pred --------hHHHHHhh-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 514 --------NAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 514 --------sAv~~~M~-~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.++-..+. +..+++ +.|= -|.+|+. .++-+|+.|++.+++
T Consensus 153 ~~~~~~d~~~l~~~~~~~~~~~~------~~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 153 EKGWEVDLDAVEAIADENTIAMV------IINP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCCcCCHHHHHHhcccCCEEEE------EECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 12222222 233332 2232 3777775 456678888876653
No 232
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=36.30 E-value=1.3e+02 Score=34.28 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
.+..||.+|.+...+.+.++.+++|. +.+.+-.|-+.-..+|+++|. ..+++.+-+...+.++|.||.+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISST 246 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEec
Confidence 46789999999988888888876553 444444677777777777775 67788888888889999998874
No 233
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=36.15 E-value=4.5e+02 Score=28.17 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=47.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHhh---
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH--- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M~--- 521 (658)
..+++|.|.+.++..+|....+.| -+|++. ++.+-+.. ..+...|+.+.++... .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 356677666666655554443333 344443 23222221 2356678777776421 1222232
Q ss_pred -----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 -----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 -----~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++..|++. +.-...|.+ .. --.++-+|++|+++|+|=
T Consensus 134 ~~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 134 DEFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred hccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEEE
Confidence 34566653 111112222 11 135666788888887763
No 234
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=36.11 E-value=84 Score=31.36 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=46.6
Q ss_pred eEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCee----cccchHHHHHHHhhCC
Q 006152 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC----SRVGTACVAMVAYGFH 556 (658)
Q Consensus 481 f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~Vv----NKiGT~~lAl~Ak~~~ 556 (658)
+-|.+...-+.-....+.+.|...|+++.++..... --+.++|.||++-- .+... ...+....-.-+...+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 456666665444444555788889988777665443 23457787777532 11211 2223222222233478
Q ss_pred CCeEeecccccc
Q 006152 557 IPVLVCCEAYKF 568 (658)
Q Consensus 557 VPVyV~aetyKf 568 (658)
+|++-+|--+-+
T Consensus 78 ~pilGIC~G~Ql 89 (200)
T PRK13527 78 LPILGTCAGLIL 89 (200)
T ss_pred CeEEEECHHHHH
Confidence 999987765544
No 235
>PF03320 FBPase_glpX: Bacterial fructose-1,6-bisphosphatase, glpX-encoded; InterPro: IPR004464 Gluconeogenesis is an important metabolic pathway, which produces glucose from noncarbohydrate precursors such as organic acids, fatty acids, amino acids, or glycerol. Fructose-1,6-bisphosphatase, a key enzyme of gluconeogenesis, is found in all organisms, and five different classes of these enzymes have been identified. This entry represents the class 2 fructose-1,6-bisphosphatases, which include GlpX and YggF of Escherichia coli (strain K12), which show different catalytic properties. The crystal structure of GlpX has been determined in a free state and in the complex with a substrate (fructose 1,6-bisphosphate) or inhibitor (phosphate). The crystal structure of the ligand-free GlpX revealed a compact, globular shape with two alpha/beta-sandwich domains. The core fold of GlpX is structurally similar to that of Li+-sensitive phosphatases suggesting that they have a common evolutionary origin and catalytic mechanism. The structure of the GlpX complex with fructose 1,6-bisphosphate revealed that the active site is located between two domains and accommodates several conserved residues coordinating two metal ions and the substrate. A third metal ion is bound to phosphate 6 of the substrate. Inorganic phosphate strongly inhibited activity of both GlpX and YggF, and the crystal structure of the GlpX complex with phosphate demonstrated that the inhibitor molecule binds to the active site. Alanine replacement mutagenesis of GlpX identifies 12 conserved residues important for activity and suggested that Thr(90) is the primary catalytic residue []. A number of the proteins in this entry, particularly those from algae are bi functional and can catalyzes the hydrolysis of fructose 1,6-bisphosphate and sedoheptulose 1,7-bisphosphate to fructose 6-phosphate and sedoheptulose 7-phosphate, respectively. ; GO: 0006071 glycerol metabolic process; PDB: 3RPL_C 3ROJ_A 3D1R_A 2R8T_A 3BIH_A 3BIG_A 1NI9_A.
Probab=36.01 E-value=1.1e+02 Score=33.34 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=32.2
Q ss_pred HHHcCCe---eEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh
Q 006152 474 AHELGKQ---FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 474 A~e~gk~---f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~ 521 (658)
|...||. +.|+|+| ||+++ .|.+++++.|..+.+|.|.-++-.+.
T Consensus 146 A~a~~k~v~dltV~vLd-RpRH~--~lI~eiR~~Garv~Li~DGDVa~ai~ 193 (309)
T PF03320_consen 146 AKALGKPVSDLTVVVLD-RPRHE--ELIEEIREAGARVKLISDGDVAGAIA 193 (309)
T ss_dssp HHHCTS-GGG-EEEEE--SGGGH--HHHHHHHHCT-EEEEESS-HHHHHHH
T ss_pred HHHcCCChHHeEEEEEc-CchHH--HHHHHHHHcCCeEEEeCcCcHHHHHH
Confidence 4445654 5666666 89987 57899999999999999988887775
No 236
>PRK07324 transaminase; Validated
Probab=36.01 E-value=2.1e+02 Score=31.12 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=56.3
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch----------HHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds----------Av~~~M~ 521 (658)
+....+|+|.|.+.++..++......|. +|++. .|.+.+.. ..+...|..++.+... .+...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3445788999988887666655544343 45553 46665433 2344568777776521 2222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .-=-..|.++++.--..++-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444332 1112335555544456677788999985554
No 237
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=35.84 E-value=3.8e+02 Score=29.42 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=64.4
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC----------Cc------hH----HHHHHHHHh
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLVR 503 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP----------~~------EG----~~La~eL~~ 503 (658)
|+..+.++|.+ ..||..|.+.+=..++..+...|.. ++.++|..- ++ .| ..+.+.|.+
T Consensus 14 ~G~~~Q~~L~~-~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 14 IGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred cCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 66777777764 6788888875433445555555764 444444321 00 01 111245554
Q ss_pred C--CCcEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 504 K--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 504 ~--GI~vT~I~----DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
. .|.++.+. ...+..+++++|.||.+.|.. ---+.+.-+|..+++|++.++
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 3 35555443 234456678899999987743 234567788999999998644
No 238
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=35.79 E-value=1.1e+02 Score=33.48 Aligned_cols=45 Identities=29% Similarity=0.491 Sum_probs=33.6
Q ss_pred HHHcCCe---eEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh
Q 006152 474 AHELGKQ---FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (658)
Q Consensus 474 A~e~gk~---f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~ 521 (658)
|...||. +.|+|+| ||+++ .|..++++.|..+.+|+|.-++-.+.
T Consensus 146 A~algk~v~dltV~vLd-RpRH~--~lI~eiR~~Gari~Li~DGDV~~ai~ 193 (309)
T cd01516 146 AKALGKPVEDLTVVVLD-RPRHA--ALIEEIREAGARIKLIPDGDVAAAIA 193 (309)
T ss_pred HHHcCCChhHeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHHH
Confidence 3334554 5666666 89886 57899999999999999977755553
No 239
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=35.75 E-value=3.6e+02 Score=28.17 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCc-EEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 496 LLLRRLVRKGLS-CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 496 ~La~eL~~~GI~-vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++-..+.+.|+. .......-+..+|+.+|.+++- .|+ ...+=|-.+|+|++++
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~-------------~g~-~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR-------------AGA-STVAELAAAGVPAILI 276 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCEEEEC-------------CCh-hHHHHHHHcCCCEEEe
Confidence 344445566763 2222232678899999998851 232 2444677789999986
No 240
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=35.58 E-value=1.4e+02 Score=32.06 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=17.3
Q ss_pred CCeecccch----HHHHHHHhhCCCCeEeecccc
Q 006152 537 GTVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 537 G~VvNKiGT----~~lAl~Ak~~~VPVyV~aety 566 (658)
|.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 181 ~~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 181 DGVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred ecCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 334555554 3466678899987754 3444
No 241
>PRK06225 aspartate aminotransferase; Provisional
Probab=35.43 E-value=2.6e+02 Score=30.16 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=53.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-chH-------HHHHhhhc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA-------ISYIIHEV 523 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA-------v~~~M~~V 523 (658)
+....+++|.|.+.++..++..+...|. +|++.+ |.+.... ..+...|..+..+. +.. +..+-..+
T Consensus 81 ~~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 154 (380)
T PRK06225 81 LDDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVPIYSEECNYKLTPELVKENM 154 (380)
T ss_pred CCCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeeccccccCCccCCHHHHHhhc
Confidence 3455789999998888666665543343 455544 5543322 34456787777665 211 11221111
Q ss_pred cEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEee
Q 006152 524 TRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV~ 562 (658)
+- ....|+-. ..-|..|+ ..++-+|++|++++++=
T Consensus 155 ~~---~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D 196 (380)
T PRK06225 155 DE---NTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD 196 (380)
T ss_pred CC---CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 10 11122211 12455665 33666788999987763
No 242
>PLN02214 cinnamoyl-CoA reductase
Probab=35.31 E-value=2.6e+02 Score=29.94 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE-cc----hHHHHHhhhccEEE
Q 006152 454 DGDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~~M~~Vd~Vl 527 (658)
.+.+||..|.+.-+... ++.+.++|. +|+++.-.+..........|...+-.++++ .| ..+..+|+.+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 45677777775544433 344555564 455443222211111122333211134444 22 44566778888888
Q ss_pred EcceeEecCC---CeecccchHHHHHHHhhCCCCeEee
Q 006152 528 LGASSVLSNG---TVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 528 vGAdaV~aNG---~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
--|-....+- --.|-.||..+.-+|+.+++.-+|.
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 7764332111 1136779999998999888864444
No 243
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=35.21 E-value=4.1e+02 Score=28.86 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=55.2
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHh----------CCCcEEEEc--c-hHHHHHh
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVR----------KGLSCTYTH--I-NAISYII 520 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~----------~GI~vT~I~--D-sAv~~~M 520 (658)
..+++|.|-+.+++.+++.+...|+ -+|++.|. .+-|..+. ..+.. .+.++..+. | ..+-.++
T Consensus 104 ~~v~~~~sgsea~~~al~~~~~~g~-~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 180 (398)
T PRK03244 104 GRVFFCNSGAEANEAAFKLARLTGR-TKIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAV 180 (398)
T ss_pred CEEEEeCchHHHHHHHHHHHHHHCC-CeEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhh
Confidence 3677888888889888887766564 34555553 34343221 11111 122344443 2 2333344
Q ss_pred -hhccEEEEcceeEec-CCCeecccc-hHHHHHHHhhCCCCeEe
Q 006152 521 -HEVTRVFLGASSVLS-NGTVCSRVG-TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 -~~Vd~VlvGAdaV~a-NG~VvNKiG-T~~lAl~Ak~~~VPVyV 561 (658)
.++-.|++ +-+.. .|.++..-+ -..|.-+|++|++.+++
T Consensus 181 ~~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 181 DDDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred cCCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24555555 33433 344444545 34567789999988865
No 244
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=35.20 E-value=79 Score=35.94 Aligned_cols=81 Identities=10% Similarity=0.050 Sum_probs=45.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCC--CcEEEEcchHHHHHhh--hccEEEEcce
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG--LSCTYTHINAISYIIH--EVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G--I~vT~I~DsAv~~~M~--~Vd~VlvGAd 531 (658)
..||..+++....++++.|++.|....++..+..+...+.+++-+....| -.-.|+....+-.+.+ ++|.|+-|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 36899999988779999999887655444444333334444442211011 0112333334444443 6888888764
Q ss_pred eEecC
Q 006152 532 SVLSN 536 (658)
Q Consensus 532 aV~aN 536 (658)
-+..|
T Consensus 83 ~lse~ 87 (472)
T PRK07178 83 FLSEN 87 (472)
T ss_pred CcccC
Confidence 44444
No 245
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=35.03 E-value=3.5e+02 Score=27.19 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=64.2
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCC---Cch-----------H----HHHHHHHHhC-
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---KHE-----------G----KLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP---~~E-----------G----~~La~eL~~~- 504 (658)
++..+.++|. +..||..|.+.+=..+++.+...|.. +++++|... .+= | ..++++|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4556666775 47888898876655566666666753 333333221 111 1 1223556543
Q ss_pred -CCcEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 505 -GLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vT~I~D----sAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.++.+.. ..+..+++++|.||...|..- --+.+.-.|+.+++||+.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 455554432 234456788999887766532 12356778999999998765
No 246
>PRK05957 aspartate aminotransferase; Provisional
Probab=34.96 E-value=3.4e+02 Score=29.56 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=53.1
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch--------HHHHHhh-hcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVT 524 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~~M~-~Vd 524 (658)
..++++|.|...++..++....+.| -+|++. .|.+.+.... +...|+.+.++... .+-..+. ++.
T Consensus 89 ~~~i~~t~G~~~~l~~~~~~~~~~g--d~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~k 162 (389)
T PRK05957 89 EQAIVVTAGSNMAFMNAILAITDPG--DEIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTR 162 (389)
T ss_pred CCeEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCce
Confidence 3457888888777755555444434 245553 4776555433 34678888777432 1222222 333
Q ss_pred EEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 525 RVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.|++ .| .-|..|+. .++-+|++|++.+++
T Consensus 163 lv~~------~~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 163 AIVT------IS--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEE------eC--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 3332 22 45777753 367788999977664
No 247
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=34.87 E-value=4.3e+02 Score=28.54 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=53.4
Q ss_pred CCCEEEeeC-ChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-chH------HH---HHhh-
Q 006152 454 DGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------IS---YIIH- 521 (658)
Q Consensus 454 dgdvILT~g-~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA------v~---~~M~- 521 (658)
+..+|+|-| -+.+++.++......+++..+++ ++|+ |.+.+..+.+.|++++++. +.. .. ..+.
T Consensus 62 ~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~--~g~~--~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~ 137 (355)
T cd00611 62 NYKVLFLQGGATGQFAAVPLNLLGDKGTADYVV--TGAW--SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAP 137 (355)
T ss_pred CceEEEEcCCchHHHHHHHHhcCCCCCeEEEEE--CCHH--HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCC
Confidence 346888888 44567766666543344443333 3555 3444555677799988875 311 11 1122
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+++. |.-++.-...|..+. -+++.||+.|+|=|
T Consensus 138 ~~~l-V~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa 170 (355)
T cd00611 138 DAAY-VHYCSNETIHGVEFD--------EVPDTGGVPLVADM 170 (355)
T ss_pred CCCE-EEEeCCcccccEEcc--------eecccCCCeEEEEc
Confidence 3443 444555555565433 34455888777733
No 248
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=34.85 E-value=2e+02 Score=31.90 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC----CCCeEeecccccc
Q 006152 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCEAYKF 568 (658)
Q Consensus 516 v~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~----~VPVyV~aetyKf 568 (658)
+-..+++.+.||+ +.++....-.|+...+.++.+. .+|+.-+|-.-.|
T Consensus 278 i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~ 329 (355)
T PTZ00182 278 IVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTP 329 (355)
T ss_pred HHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCcc
Confidence 3444556777754 5677777778888888888875 6788766554444
No 249
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=34.72 E-value=3e+02 Score=23.68 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=25.7
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|+||+|++.- +.+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~---~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGR---SGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSST---TSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCC---CCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 799999999882 22222233444455677888999986
No 250
>PRK06141 ornithine cyclodeaminase; Validated
Probab=34.69 E-value=3.2e+02 Score=29.46 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=54.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcce--
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS-- 531 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAd-- 531 (658)
+..+|+.+|.+..-...++.........+|+|.. |-.....+++.++.+.|+++... ++ +...+.++|.|+.-..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~-~~-~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVV-TD-LEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEe-CC-HHHHHhcCCEEEEeeCCC
Confidence 5678999999876545444333322334566664 54445667778887777766543 32 3445678998866332
Q ss_pred -e-----EecCCCeecccchH
Q 006152 532 -S-----VLSNGTVCSRVGTA 546 (658)
Q Consensus 532 -a-----V~aNG~VvNKiGT~ 546 (658)
- .+..|.+++-+|++
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 1 23456677767665
No 251
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=34.58 E-value=5e+02 Score=28.59 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred CCEEEeeCChHHHHHHHHHH-H-HcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCcEEEEcch--------HHHHHhh-
Q 006152 455 GDVLLTYGSSSAVEMILQHA-H-ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN--------AISYIIH- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A-~-e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~Ds--------Av~~~M~- 521 (658)
.++|+|.|.+..+..+++.. . ..+..-+|++.+ +.+.+.... ..+ ...|+.+.++... .+...+.
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 46788877766775555431 0 112233566654 333332222 223 4568888777521 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.++|++- +.-...|.+.. --.|+-+|++|++.|+|
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~viv 208 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLV 208 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444433 22223444433 13567788889877665
No 252
>PRK08960 hypothetical protein; Provisional
Probab=34.47 E-value=2.5e+02 Score=30.51 Aligned_cols=95 Identities=11% Similarity=0.066 Sum_probs=51.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-ch------HHHHHhh---
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds------Av~~~M~--- 521 (658)
+...++++|.|.+.++..++....+.| -+|+|. .|.+.+...... ..|..+..+. |. -+..+.+
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 456678899999888866554443333 355553 466655544333 3455555443 21 1223322
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeE
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVy 560 (658)
+..+|+ +.| .-|..|+. .++-+|++|++.++
T Consensus 164 ~~~~~i~------i~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 164 ADTVGAL------VAS--PANPTGTLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred ccceEEE------EEC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEE
Confidence 222332 222 24677764 46667888887654
No 253
>PRK12354 carbamate kinase; Reviewed
Probab=34.35 E-value=1.2e+02 Score=33.18 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcC----CeeEEEEeCCCCCchHHHHHHHH
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRL 501 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~g----k~f~ViV~ESRP~~EG~~La~eL 501 (658)
++++.++++....+|+||||+.-|..++..+.+.. ..+.+.+.+|- ..-|..+...|
T Consensus 31 ~a~~ia~~~~~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~sq-g~iGy~l~q~l 91 (307)
T PRK12354 31 AAEQIAKIAREHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAETE-GMIGYMLEQEL 91 (307)
T ss_pred HHHHHHHHhCCCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhccccc-chHHHHHHHHH
Confidence 44455556665589999999999865554444322 22444444443 23455555443
No 254
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.17 E-value=5.7e+02 Score=27.86 Aligned_cols=96 Identities=13% Similarity=0.231 Sum_probs=50.5
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchHHH---HHhh-hccEEEEcc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAIS---YIIH-EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~---~~M~-~Vd~VlvGA 530 (658)
.|+|-+...++.. +..+...|. +|++.+ |.+.|. .+. ..+...|+.++++...-.. ..+. +...|++-
T Consensus 70 ~~~~~sG~~ai~~-~~~ll~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQL-VMSLFRSGD--ELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHH-HHHHhCCCC--EEEEec--CCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 4555555555643 334444443 566543 555553 333 4566789988887543222 2232 34444441
Q ss_pred eeEecCCCeecccch----HHHHHHHhhCCCCeEeecccc
Q 006152 531 SSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 531 daV~aNG~VvNKiGT----~~lAl~Ak~~~VPVyV~aety 566 (658)
...|..|+ ..|+-+|++|+++++| =++|
T Consensus 144 -------~P~NP~~~~~dl~~I~~la~~~g~~lIv-D~t~ 175 (366)
T PRK08247 144 -------TPTNPLMQETDIAAIAKIAKKHGLLLIV-DNTF 175 (366)
T ss_pred -------CCCCCCCcHHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 11244443 3467788999987664 3444
No 255
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=34.09 E-value=1.4e+02 Score=29.22 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=34.5
Q ss_pred EEEeeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006152 457 VLLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (658)
+|-||.....+..+|....++. ..++|||+|.....+-..+++++.+....+.++.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 3555555666667777766554 3577877776666555666666665544455554
No 256
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=33.92 E-value=7.7e+02 Score=28.20 Aligned_cols=149 Identities=11% Similarity=0.135 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHH
Q 006152 395 SVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA 474 (658)
Q Consensus 395 sVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A 474 (658)
-+.+.+.-++|+...+-...... +.+ ++|+. ...+.|.+..-.++ .|..+..+|.+..+..+-+-+
T Consensus 259 P~G~~~T~~~l~~ia~~~g~~~~-----e~i-------~~er~-~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~fl 324 (454)
T cd01973 259 PIGIKNTDAFLQNIKELTGKPIP-----ESL-------VRERG-IAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEFC 324 (454)
T ss_pred CcChHHHHHHHHHHHHHHCCCCC-----HHH-------HHHHH-HHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHHH
Confidence 45677777777665443322221 111 12211 12233333333333 588888888877665555555
Q ss_pred HHcCCeeEEEEeCC-CCCchHHHHHHHHH-hCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHH
Q 006152 475 HELGKQFRVVIVDS-RPKHEGKLLLRRLV-RKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (658)
Q Consensus 475 ~e~gk~f~ViV~ES-RP~~EG~~La~eL~-~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~A 552 (658)
.+.|-...+.++-+ .+..+.....++|. ..+..+.++.+.-..-+...+..--.++|-++.|. .---+|
T Consensus 325 ~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~s---------~~~~~A 395 (454)
T cd01973 325 LEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGHS---------KGRYIA 395 (454)
T ss_pred HHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEECC---------ccHHHH
Confidence 57788876666554 45555655566663 23444444544433333221110001133333221 224678
Q ss_pred hhCCCCeEee-cccc
Q 006152 553 YGFHIPVLVC-CEAY 566 (658)
Q Consensus 553 k~~~VPVyV~-aety 566 (658)
+..+||++.+ .|.|
T Consensus 396 ~~~gip~~~~g~Pv~ 410 (454)
T cd01973 396 IDNNIPMVRVGFPTF 410 (454)
T ss_pred HHcCCCEEEecCCee
Confidence 8999999876 4544
No 257
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=33.92 E-value=1.2e+02 Score=31.78 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCeEeecccc
Q 006152 515 AISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 515 Av~~~M~~Vd~VlvGAdaV~aNG~VvNKi-GT~~lAl~Ak~~~VPVyV~aety 566 (658)
.+-..+.++|.||+|-..++.+..-.... --+.+..+|+.+++|+++.+-+.
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~gi 109 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGI 109 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 44556779999999998888765422111 11235678899999999987654
No 258
>PRK07681 aspartate aminotransferase; Provisional
Probab=33.84 E-value=2.8e+02 Score=30.23 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=53.7
Q ss_pred ccC-CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-H------HHHHh---
Q 006152 452 IRD-GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYII--- 520 (658)
Q Consensus 452 I~d-gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A------v~~~M--- 520 (658)
+.. .++++|.|.+.++..++....+.| -+|++. .|.+.+.... +...|+.+..+... . +..+.
T Consensus 90 ~~~~~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 163 (399)
T PRK07681 90 LNADKEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEI 163 (399)
T ss_pred CCCCCeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 443 578889998888855554443333 355554 3777665443 34578888777521 1 11121
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 521 -~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
+++..|++- .-=-..|.++++-=-..|+-+|++|++.++
T Consensus 164 ~~~~k~v~l~-~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 164 ADKAKMMILN-FPGNPVPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cccceEEEEe-CCCCCcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 234444331 000011344433334567778899998554
No 259
>PRK13566 anthranilate synthase; Provisional
Probab=33.72 E-value=1.8e+02 Score=35.36 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=51.4
Q ss_pred cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHh--hhccEEEE-cceeEecCCCeecccchHHHHHHHh
Q 006152 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII--HEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAY 553 (658)
Q Consensus 477 ~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M--~~Vd~Vlv-GAdaV~aNG~VvNKiGT~~lAl~Ak 553 (658)
.|+..+|.|+|-...+ -..+++.|.+.|+.|+++....-...+ .++|.||+ |-- |+ .+..+...+--.|.
T Consensus 523 ~~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHH
Confidence 3566788888876544 336678999999999998765432232 25788776 211 11 12234444444555
Q ss_pred hCCCCeEeecccc
Q 006152 554 GFHIPVLVCCEAY 566 (658)
Q Consensus 554 ~~~VPVyV~aety 566 (658)
..++||+-+|=-+
T Consensus 596 ~~~iPILGIClG~ 608 (720)
T PRK13566 596 ARNLPIFGVCLGL 608 (720)
T ss_pred HCCCcEEEEehhH
Confidence 6799999766433
No 260
>PRK06767 methionine gamma-lyase; Provisional
Probab=33.70 E-value=4.1e+02 Score=29.26 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=47.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHHHH-HHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La~e-L~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
+.|++-+.+.++..+|....+.| -+|++.+ |.+.+. .+... +...|+++.++... .+-..+. +..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAG--DHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 44555444445545444443333 3555533 444332 22322 34568887776322 2222222 34445442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. --.|+-+||+++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 11112343333 24677788889987776
No 261
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=33.70 E-value=2.5e+02 Score=29.22 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=61.8
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.|..||..|.+.+-.+=++.+.+.|-.++||-.+-.|..+ .|.+.| .++++.-.--..-+..+++||...|-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATdD- 95 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATDD- 95 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCCC-
Confidence 4678999999987655566666778888888766544433 244443 25555433333344567777766542
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+.=--.++-.|++++++|.++..
T Consensus 96 --------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 96 --------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred --------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 22234678899999999998765
No 262
>PRK07340 ornithine cyclodeaminase; Validated
Probab=33.62 E-value=3.3e+02 Score=29.23 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=51.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc---
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA--- 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA--- 530 (658)
+..+|+.+|.+..-...++.+......-+|+|.. |-...-.+++.++.+.|+++. .++ ...++.++|.|+...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~-r~~~~a~~~a~~~~~~~~~~~--~~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG-RTAASAAAFCAHARALGPTAE--PLD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHHHHHhcCCeeE--ECC-HHHHhhcCCEEEEccCCC
Confidence 5678999999866544444443322223455554 433345567788877777766 232 234457899887521
Q ss_pred ee----EecCCCeecccchH
Q 006152 531 SS----VLSNGTVCSRVGTA 546 (658)
Q Consensus 531 da----V~aNG~VvNKiGT~ 546 (658)
+- .+.-|..+|-+|++
T Consensus 200 ~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 200 TPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred CceeCccCCCCCEEEecCCC
Confidence 11 24566666767654
No 263
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=33.54 E-value=5.6e+02 Score=28.26 Aligned_cols=109 Identities=12% Similarity=0.098 Sum_probs=63.6
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------CC---------chHHHHHHHHHhC-
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P~---------~EG~~La~eL~~~- 504 (658)
++..+.+.+. +..||.+|.+.+=..++..+...|.. +++++|-. -. .--..+++.|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4555566674 46788888876544555666666754 23333321 10 0112234556543
Q ss_pred -CCcEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vT~I~----DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.++.+. ...+..++.++|.||-..|.+.. -+.+.-+|+.++|||+.+.
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35554443 23455677899999988876531 2456778999999998763
No 264
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.53 E-value=1.4e+02 Score=29.86 Aligned_cols=96 Identities=15% Similarity=0.274 Sum_probs=49.8
Q ss_pred CCEEEeeCCh----HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhhc--cE
Q 006152 455 GDVLLTYGSS----SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEV--TR 525 (658)
Q Consensus 455 gdvILT~g~S----saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~V--d~ 525 (658)
+..|..||-| .++..++.+..++....+|+++-+-| .|.+++..+...++.+.|.+. .++..++..+ +.
T Consensus 21 ~~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 21 GPLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDL 98 (186)
T ss_dssp -T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCE
Confidence 3899999988 34556666666665677888876643 478888666666899999874 3445555543 55
Q ss_pred EE-EcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 526 VF-LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 526 Vl-vGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+| ++.|-. . .+-..|+..|||++.+..
T Consensus 99 ~i~~EtElW-P-----------nll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 99 LIWVETELW-P-----------NLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp EEEES-----H-----------HHHHH-----S-EEEEEE
T ss_pred EEEEccccC-H-----------HHHHHHhhcCCCEEEEee
Confidence 44 455444 3 366788899999998865
No 265
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=33.48 E-value=1e+02 Score=31.64 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=58.4
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEE--Ecc-hHHHHHhhhc-cEEEEcceeE
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEV-TRVFLGASSV 533 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~--I~D-sAv~~~M~~V-d~VlvGAdaV 533 (658)
||+.|.+--|..-|.....+. ..+|+.++..+....... .++.... +.| ..+...+..+ |.|+--|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 777776554544444333221 556666664333221111 2222211 223 5666667777 8887755555
Q ss_pred ecCCC---------eecccchHHHHHHHhhCCCCeEeeccc
Q 006152 534 LSNGT---------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 ~aNG~---------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
...+. -+|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 43333 589999999999999988877776544
No 266
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=33.35 E-value=3.1e+02 Score=29.86 Aligned_cols=96 Identities=20% Similarity=0.333 Sum_probs=50.6
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~~M~ 521 (658)
+....+++|.|.+.++..++....+.|. +|++. .|.+.... ..+...|+.+..+.. ..+-..++
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3444677888888877555544433332 45554 36554332 334566877766532 11222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
+..+|++ .| --|..|+. .++-+|+++++.+++
T Consensus 167 ~~~~~v~~------~~--p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIV------NN--PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEE------cC--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3334433 12 24666654 456677888876653
No 267
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=33.30 E-value=2e+02 Score=31.84 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=61.6
Q ss_pred CCCEEEeeCChH---HHHHHHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCC-CcEEEEcchHHHHHhhhccEEEE
Q 006152 454 DGDVLLTYGSSS---AVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 454 dgdvILT~g~Ss---aV~~vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+-.+||+.|-|. .+..++..+..... ++.|+..-.+-..+ ++...+.+.| +.+....|+ +..+|+.+|+|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 567999999883 45566666654444 47777655443322 3345566666 444444565 56677888887
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
+.|.|...++-++ ..++|.+.+=.-+
T Consensus 257 -----------IsRaGa~Ti~E~~-a~g~P~IliP~p~ 282 (357)
T COG0707 257 -----------ISRAGALTIAELL-ALGVPAILVPYPP 282 (357)
T ss_pred -----------EeCCcccHHHHHH-HhCCCEEEeCCCC
Confidence 4677777777644 4699999875544
No 268
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=33.18 E-value=45 Score=36.33 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=45.9
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEccee
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASS 532 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAda 532 (658)
..+||..|.+..-..+++.|.+. .++|++++..|..-|..++... +.+-+....++..+.+ ++|.|+.+.+.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~~d~~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDMLDGDALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCCCCHHHHHHHHHHhCCCEEEEeeCc
Confidence 35899999987665666666654 5688899999987776644221 1111111134444555 68988888765
Q ss_pred E
Q 006152 533 V 533 (658)
Q Consensus 533 V 533 (658)
+
T Consensus 86 ~ 86 (395)
T PRK09288 86 I 86 (395)
T ss_pred C
Confidence 4
No 269
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=33.18 E-value=5.3e+02 Score=31.10 Aligned_cols=100 Identities=9% Similarity=0.083 Sum_probs=69.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeCCCCCchH-----HHHHHHHHhCCCcEEEEc---chHHHHHhhhcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEG-----KLLLRRLVRKGLSCTYTH---INAISYIIHEVT 524 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~ESRP~~EG-----~~La~eL~~~GI~vT~I~---DsAv~~~M~~Vd 524 (658)
....|+..|-+.....++..+.+.|- .|+.++.|.-+-+-+ .++++. ...+|+++.|. +..+--+++..|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 56889999998877777888888885 688888887766555 223333 24578888887 455666667889
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.||.-+|. + +.-....+--.|...|.|++-
T Consensus 207 iVi~vsDd----y---~~~~Lr~lN~acvkegk~~IP 236 (637)
T TIGR03693 207 WVLYVSDN----G---DIDDLHALHAFCKEEGKGFIP 236 (637)
T ss_pred EEEEECCC----C---ChHHHHHHHHHHHHcCCCeEE
Confidence 88877653 2 222466667778888855543
No 270
>PRK08361 aspartate aminotransferase; Provisional
Probab=33.12 E-value=3.8e+02 Score=29.07 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=51.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-ch------HHHHHhh---
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN------AISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-Ds------Av~~~M~--- 521 (658)
+....+++|.|.+.++..++......| -+|++.+ |.+.+.. ..+...|+.+..+. |. -+..+.+
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 445578888888777765555443333 3566544 5554432 33444677776664 21 1222322
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..|++- .---..|.++..-=-..++-+|++|++.+++
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 33334332 1111123333322124466678888885543
No 271
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=32.86 E-value=5.9e+02 Score=27.37 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=47.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHH--hCCCcEEEEcc--------hHHHHHhh-hc
Q 006152 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLV--RKGLSCTYTHI--------NAISYIIH-EV 523 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~--~~GI~vT~I~D--------sAv~~~M~-~V 523 (658)
.+++|.+.++..+..+..+... ++.-.|++. .|.+.....+..+. ..|+.+.++.- ..+-..+. ++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~--~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVP--DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEc--CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4556654444444444444322 223455553 44444433333332 23466655532 12222222 34
Q ss_pred cEEEEcceeEecCCCeecccch-HHHHHHHhhCCCCeEe
Q 006152 524 TRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNKiGT-~~lAl~Ak~~~VPVyV 561 (658)
..|++-. .-..|.+ ..- -.|+-+|++|++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4444433 2234544 233 5567788999988877
No 272
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.85 E-value=2.6e+02 Score=31.20 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=42.2
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHH---HHHhhhccEEEEcc
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLGA 530 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv---~~~M~~Vd~VlvGA 530 (658)
|+.+|.+.+=....+.++++| ..|.+.|.++...=..+...|.+.||.+..-.+... .....+.|.|+++.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 566665533112344455555 588999988765433444568888988865433321 23456789888844
No 273
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=32.80 E-value=58 Score=37.53 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcchHHHHHhh--hccEEEEcceeE
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAdaV 533 (658)
.||..|.+.-...+...+.+..+..+||++.+.+ +-|... +......-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899998876534444455544567999996633 444322 111111001111111233434443 699999998764
Q ss_pred e
Q 006152 534 L 534 (658)
Q Consensus 534 ~ 534 (658)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 274
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=32.72 E-value=6.8e+02 Score=27.76 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=54.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHH-HhCCCcEEEEcch-------HHHHHhh-hccE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN-------AISYIIH-EVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL-~~~GI~vT~I~Ds-------Av~~~M~-~Vd~ 525 (658)
.+++|.|.+.+++.++. +....+.-+|++.+ |.+....-+ ..+ ...|+.+.++... .+-..+. ++..
T Consensus 131 ~v~~~~g~t~~~~~~~~-a~~~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALM-AVRITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHH-HHHhcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 46677777666655554 33222334677754 445433333 333 3468988888532 1222222 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
|++.. . ...|.+ .. --.|+-+||++++.|+|.
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv~ 239 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIVG 239 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEEE
Confidence 54443 2 333433 33 345788999999999883
No 275
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.68 E-value=8.4e+02 Score=28.31 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=55.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHH-HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-HHHHHhh--hccEEEEc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIH--EVTRVFLG 529 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~-e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-Av~~~M~--~Vd~VlvG 529 (658)
.|..+..+|..+.+..+.+-+. +.|-.. +.+-+.-......+...|...+..+.+..|. .+...+. +.|+||
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v--v~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~Pdlii-- 367 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEV--VGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELVL-- 367 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeE--EEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEE--
Confidence 5788899988766556555555 456554 4443322233445556677777666665663 3333444 345442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
|+..-..+|++.++|+++++
T Consensus 368 --------------G~~~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 368 --------------GTQMERHSAKRLGIPCAVIS 387 (519)
T ss_pred --------------EcchHHHHHHHcCCCEEEec
Confidence 44555678999999988765
No 276
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.55 E-value=1.7e+02 Score=32.15 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=40.6
Q ss_pred EEEeeCCh-HHHHHHHHHHHHcCCeeEEEEeCCCCCchH--HHHHHHHHhCCCcEEEEcchH
Q 006152 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINA 515 (658)
Q Consensus 457 vILT~g~S-saV~~vL~~A~e~gk~f~ViV~ESRP~~EG--~~La~eL~~~GI~vT~I~DsA 515 (658)
.|.||++- ..++..+..|++.|....+.+..+-..-.. .++++.+.+.|.+|.||+|++
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 36677653 456677888888887777777666433333 344577788899999999975
No 277
>PRK08064 cystathionine beta-lyase; Provisional
Probab=32.46 E-value=4.4e+02 Score=29.12 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=49.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchH-HHHH-HHHHhCCCcEEEEcchHHH---HHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHINAIS---YIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG-~~La-~eL~~~GI~vT~I~DsAv~---~~M~-~Vd~VlvG 529 (658)
..|++-+.+.++..+|. +...|. +|++. .|.+.| ..+. ..+...|+.++++....+. ..+. +...|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 34444333345555553 454444 56664 455544 2333 4567789999988643232 2332 4444444
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
..---..|.+.. --.|+-+|+.+++.|+|=
T Consensus 145 ~~p~NptG~~~d---l~~I~~la~~~g~~vvvD 174 (390)
T PRK08064 145 ETPSNPLLKVTD---IRGVVKLAKAIGCLTFVD 174 (390)
T ss_pred ECCCCCCcEecc---HHHHHHHHHHcCCEEEEE
Confidence 111112233321 135677889999877663
No 278
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=32.33 E-value=1.7e+02 Score=33.78 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCcEEEEcchH--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCCeEeec
Q 006152 496 LLLRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCC 563 (658)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsA--------v~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~----~~VPVyV~a 563 (658)
+.+..|.+.||.+++|.... +-...++...|| ++.+|....-+|+...+.++.+ ...||.-++
T Consensus 357 ~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~ 431 (464)
T PRK11892 357 KAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVT 431 (464)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEec
Confidence 33456777777777775433 334445666664 5678888888999999998887 367888765
Q ss_pred ccccc
Q 006152 564 EAYKF 568 (658)
Q Consensus 564 etyKf 568 (658)
-...|
T Consensus 432 ~~d~~ 436 (464)
T PRK11892 432 GKDVP 436 (464)
T ss_pred cCCcc
Confidence 54333
No 279
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=32.09 E-value=4.8e+02 Score=25.32 Aligned_cols=93 Identities=25% Similarity=0.410 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcchHH----HHHHHHHHHHHHHHhc-CcccccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006152 351 CIAMLQAFQEAIRDYSTPPAKTLSR----DLTAKISSYVSFLIDC-RPLSVSMGNAIRFLKSQIAKIPISLSESEAKATL 425 (658)
Q Consensus 351 aiaml~A~k~vI~dy~~p~~~~~~r----~L~~~L~~~i~~L~~a-RPtsVsmgNAIr~lk~~I~~~~~~~~~~eaKe~L 425 (658)
.+|...+-.-+.+||.+.++..-.+ .+...|...+.. .+| -|+-.+|.|-++.+....... . .++..
T Consensus 29 ~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLal-vTcrepL~~~i~~~l~~~l~~~~~~----~---~~~~~ 100 (147)
T PF12842_consen 29 TIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLAL-VTCREPLRESIQNNLRSLLSQLNGS----T---EQELP 100 (147)
T ss_pred HHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC----c---hhhhH
Confidence 3555556555678998765432211 222233322222 344 455666666665554322111 1 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006152 426 HSDIERFINEKIILADRVIVKHAVTK 451 (658)
Q Consensus 426 ~e~Id~fi~E~i~~a~~~Ia~~a~~~ 451 (658)
.+.+...+++.++.++..|-+.+.++
T Consensus 101 e~~i~~~~~dNlel~~~~Iek~a~ek 126 (147)
T PF12842_consen 101 EQAIQQIVNDNLELACAFIEKAAMEK 126 (147)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444455555655554444443
No 280
>PRK06460 hypothetical protein; Provisional
Probab=32.05 E-value=5.5e+02 Score=28.19 Aligned_cols=15 Identities=13% Similarity=-0.029 Sum_probs=9.5
Q ss_pred HHHHHHhhCCCCeEe
Q 006152 547 CVAMVAYGFHIPVLV 561 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV 561 (658)
.|+-+|+.|+++|+|
T Consensus 151 ~I~~la~~~g~~viv 165 (376)
T PRK06460 151 ELSKVCKENGSILIV 165 (376)
T ss_pred HHHHHHHHcCCEEEE
Confidence 356667777776543
No 281
>PRK07777 aminotransferase; Validated
Probab=31.97 E-value=4.6e+02 Score=28.40 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=29.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (658)
..+++|.|.+.++..++......| -+|++. +|.+.+...+ +...|..+..+
T Consensus 86 ~~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~~--~~~~g~~~~~~ 136 (387)
T PRK07777 86 TEVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAAV--IAMAGAHRVPV 136 (387)
T ss_pred CcEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHCCCEEEEe
Confidence 358899998888866555443323 355553 3666664433 33456655444
No 282
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.88 E-value=8e+02 Score=28.16 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCc
Q 006152 428 DIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (658)
Q Consensus 428 ~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~ 507 (658)
..+.||++....+.+.|.++ .+++ .|..|..++.+..+..+.+-+.+.|-....+++......+=..+.+.| .. .
T Consensus 299 ~~e~~i~~e~~~~~~~l~~~-~~~l-~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~-~~--~ 373 (475)
T PRK14478 299 RTEALIAEEEAKAWAALEPY-RPRL-EGKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM-GP--D 373 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh-CCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc-CC--C
Confidence 34444444333344444433 3444 467777777665444555556677877766666554332222222333 32 3
Q ss_pred EEEEcch---HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 508 CTYTHIN---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 508 vT~I~Ds---Av~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.++.|. .+...+. ++|++|-+ ..-.-+|+..+||++..
T Consensus 374 ~~v~~d~~~~e~~~~i~~~~pDliig~----------------s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 374 AHMIDDANPRELYKMLKEAKADIMLSG----------------GRSQFIALKAGMPWLDI 417 (475)
T ss_pred cEEEeCCCHHHHHHHHhhcCCCEEEec----------------CchhhhhhhcCCCEEEc
Confidence 4455553 2333344 35555433 11235688899999843
No 283
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=31.64 E-value=3e+02 Score=26.87 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCEEEeeCC------h--HHHHHHHHHHHHcCCeeEEEEeCCCCC------------chHHHHHHHHHhCCCcEEEEcc-
Q 006152 455 GDVLLTYGS------S--SAVEMILQHAHELGKQFRVVIVDSRPK------------HEGKLLLRRLVRKGLSCTYTHI- 513 (658)
Q Consensus 455 gdvILT~g~------S--saV~~vL~~A~e~gk~f~ViV~ESRP~------------~EG~~La~eL~~~GI~vT~I~D- 513 (658)
..+++|+|+ + .++..++..|.+.+..--|+.-+..|. ..-.+=.+.|.+.||+..++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F 84 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPF 84 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-C
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 457888876 2 456677777777777777787787762 2334445678899999877754
Q ss_pred h-HHH---------HHhh---hccEEEEcceeEecCCCeecccchH-HHHHHHhhCCCCeEeecc
Q 006152 514 N-AIS---------YIIH---EVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 514 s-Av~---------~~M~---~Vd~VlvGAdaV~aNG~VvNKiGT~-~lAl~Ak~~~VPVyV~ae 564 (658)
+ .++ .++. .+..+++|.|-=+-. ++.|+. .|.-.++.+++.|+++-+
T Consensus 85 ~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v~~ 145 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVVPP 145 (157)
T ss_dssp CCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE--
T ss_pred hHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEECC
Confidence 2 211 2222 588999999988854 455554 444567778898888744
No 284
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=31.61 E-value=2.1e+02 Score=31.10 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=70.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
+.-+.|=...-+...+.+|.+.|.+.-|+++|.=|...=.++.+++.+.| +++|=-|.-+.+.+...++=+=...|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 33344444444446677888889999999999999999888889999998 6777777777777764333221256666
Q ss_pred CCC--eecccch--HHHHHHHhhCCCCeEee
Q 006152 536 NGT--VCSRVGT--ACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 536 NG~--VvNKiGT--~~lAl~Ak~~~VPVyV~ 562 (658)
-|. +++|.|| |.++--=.+.+.=++.|
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~ 175 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTA 175 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceEEE
Confidence 675 5788776 45554444445444433
No 285
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=31.53 E-value=4.2e+02 Score=25.74 Aligned_cols=106 Identities=16% Similarity=0.234 Sum_probs=57.9
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC--CCchHHHHHHHHHhCCCcEEEEc-c----hHHHHHhh-------hc
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH-------EV 523 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR--P~~EG~~La~eL~~~GI~vT~I~-D----sAv~~~M~-------~V 523 (658)
|+|=|.+..=..+.+...+++ .-+|+++--+ +..+..++..+|.+.|..+.|+. | ..+..++. .+
T Consensus 4 litGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i 82 (181)
T PF08659_consen 4 LITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGPI 82 (181)
T ss_dssp EEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-E
T ss_pred EEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCCc
Confidence 344344443334445555555 4566666555 45566778899999999999985 4 34444443 46
Q ss_pred cEEEEcceeEecCCCeecc-------------cchHHHHHHHhhCCCCeEeeccc
Q 006152 524 TRVFLGASSVLSNGTVCSR-------------VGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 524 d~VlvGAdaV~aNG~VvNK-------------iGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+-||-+|-. +.++.+.++ .|+..+.-+...+.+-|+|++.+
T Consensus 83 ~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SS 136 (181)
T PF08659_consen 83 DGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSS 136 (181)
T ss_dssp EEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred ceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECC
Confidence 777777654 557766663 24555555555677888877654
No 286
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.50 E-value=5.3e+02 Score=27.30 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=52.5
Q ss_pred CCEEEeeCChHH---HHHHHHHHHHc-CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-hHHHHHhhhccEEEEc
Q 006152 455 GDVLLTYGSSSA---VEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~Ssa---V~~vL~~A~e~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-sAv~~~M~~Vd~VlvG 529 (658)
.-+|+.+|.+.- +..+|..|.++ .....+++.-++... ..+...+. .|+.+.++.- ..+..+|..+|.+++.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346788887632 33344344321 222233333333222 34445555 7887554431 4678889999999863
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+ |+ ...+=|-.+|+|++++..
T Consensus 260 ~-------------g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A-------------GA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C-------------CH-HHHHHHHHhCCCEEEecC
Confidence 2 21 334567788999998864
No 287
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=31.39 E-value=1.3e+02 Score=31.05 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.|..||.+|.+++-..=++...+.|-..+||-.|.-| ++.....+.+| +.+-+.--......++.||+-.|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~-----el~~~~~~~~i--~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEP-----ELKALIEEGKI--KWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccH-----HHHHHHHhcCc--chhhcccChhhhcCceEEEEeCCCH
Confidence 5778999999987555456666778888888777632 23222223332 2222222222223477777655432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeeccc
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
-- --.++-+|+.+++||+|+-..
T Consensus 84 ~l---------n~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 84 EL---------NERIAKAARERRILVNVVDDP 106 (210)
T ss_pred HH---------HHHHHHHHHHhCCceeccCCc
Confidence 22 245888999999999998543
No 288
>PRK06348 aspartate aminotransferase; Provisional
Probab=31.39 E-value=3.7e+02 Score=29.20 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=52.7
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc---c-------hHHHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---D-------sAv~~~M~ 521 (658)
+...++++|.|.+.++..++......|. +|++. .|.+.+...+.+ ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4556788999998888665555544443 55553 477766554433 3465555553 1 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeE
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
++..|++ + ..-|..|. ..++-+|++|++.++
T Consensus 161 ~~~~~v~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 161 SKTKAIIL-------N-SPNNPTGAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCccEEEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEE
Confidence 3444443 2 23456665 446667888887554
No 289
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=31.20 E-value=1.4e+02 Score=27.56 Aligned_cols=47 Identities=30% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCe-eEEEEeCCCCCchHHHHH-HHHHhCCCcEEEEcch
Q 006152 465 SAVEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (658)
Q Consensus 465 saV~~vL~~A~e~gk~-f~ViV~ESRP~~EG~~La-~eL~~~GI~vT~I~Ds 514 (658)
.+.+.+++.|.+.|.. ++|++=. ...|++.+ +.|...|+.+..|.|.
T Consensus 47 ~~a~~~~~~~~~~gi~~v~v~ikG---~g~gr~~~lk~l~~~gl~I~~I~D~ 95 (110)
T PF00411_consen 47 QAAEKIAKKAKELGIKTVRVKIKG---FGPGREAALKALKKSGLKIVSITDV 95 (110)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEES---SSTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcC---CCccHHHHHHHHHhcCCEEEEEEee
Confidence 4566778888877743 4555533 56677665 8999999999999984
No 290
>PLN02591 tryptophan synthase
Probab=31.17 E-value=5.3e+02 Score=27.25 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=64.9
Q ss_pred CEEEeeCCh---HHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-chH----HHHHhhhccEEE
Q 006152 456 DVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA----ISYIIHEVTRVF 527 (658)
Q Consensus 456 dvILT~g~S---saV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA----v~~~M~~Vd~Vl 527 (658)
-++|||-|- .-+++|+..+.+.|-. -|++.| -|..|..++...+.+.||....+. .+. +..+....+-.|
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipD-LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPD-LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCC-CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 478888773 4688899999887732 455555 477888888999999999765543 443 344444432222
Q ss_pred EcceeEecCCCeecccc-----hHHHHHHHhhCCCCeEee
Q 006152 528 LGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 528 vGAdaV~aNG~VvNKiG-----T~~lAl~Ak~~~VPVyV~ 562 (658)
..|..+|-.-.+.+ ...+..+-++.++|++|=
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 34444555544433 223566666679999984
No 291
>PRK06207 aspartate aminotransferase; Provisional
Probab=31.15 E-value=5.6e+02 Score=28.17 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc-------------hHHHHHhh
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------------NAISYIIH 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D-------------sAv~~~M~ 521 (658)
.++++|.|.+.++..++....+.| -+|+|. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 103 ~~I~it~Ga~~al~~~~~~l~~~G--d~Vlv~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 103 DELIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 678999998888866665554434 345553 36665543 333445665554431 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHH-------HHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGTAC-------VAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT~~-------lAl~Ak~~~VPVyV 561 (658)
++.+|++ .|= -|..|+.. |+-+|+.|++.+++
T Consensus 177 ~~~k~v~l------~~P--~NPTG~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 177 AGVRVFLF------SNP--NNPAGVVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred hcCeEEEE------CCC--CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3444433 221 26777653 66678888876553
No 292
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=30.77 E-value=2.3e+02 Score=30.60 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHhhCCCCeEe
Q 006152 546 ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 546 ~~lAl~Ak~~~VPVyV 561 (658)
-.|+-+|++|++.+++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3566788888886654
No 293
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.70 E-value=2.9e+02 Score=28.18 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=65.7
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC-----C---CCC-----chH----HHHHHHHHhCC-
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-----S---RPK-----HEG----KLLLRRLVRKG- 505 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E-----S---RP~-----~EG----~~La~eL~~~G- 505 (658)
++..+.++|. +.+|+..|.+.+=..++..+...|..--.++.. + |-. .-| ..++++|.+..
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP 89 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence 5566666776 478888988766555666666667542222211 1 111 012 12235666543
Q ss_pred -CcEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 506 -LSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 506 -I~vT~I~D----sAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+.++.+.. ..+..++..+|.||...|... .-..+.-.|+.+++|++.+.
T Consensus 90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 90 DVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55555432 234456788999988877542 23567778999999998763
No 294
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=30.70 E-value=3.5e+02 Score=29.87 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=44.1
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchHHHHHhh----hccEEEEcce
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGAS 531 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~~M~----~Vd~VlvGAd 531 (658)
|++-+...++..+|....+.| -+|++ +.|.+.+. .+. ..+...|+.++++....+..+.+ +...|++--
T Consensus 80 i~~~sG~~Ai~~~l~all~~G--d~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~- 154 (388)
T PRK07811 80 RAFSSGMAATDCLLRAVLRPG--DHIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVET- 154 (388)
T ss_pred EEeCCHHHHHHHHHHHHhCCC--CEEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEEC-
Confidence 333333444544444443333 35555 33555543 332 33445677777764322222222 333343320
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
---..|.+ .---.++-+||.|+++++|=
T Consensus 155 p~NPtg~~---~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 155 PTNPLLSI---TDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred CCCCccee---cCHHHHHHHHHHcCCEEEEE
Confidence 00011222 22345677788888877763
No 295
>PRK07179 hypothetical protein; Provisional
Probab=30.70 E-value=4.7e+02 Score=28.65 Aligned_cols=97 Identities=19% Similarity=0.081 Sum_probs=49.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc--c-hHHHHHhhh--ccEEEEc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE--VTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~~M~~--Vd~VlvG 529 (658)
..+|+|.|-+.++..+|..+...| -+|++.. +..- .+...+...|+++.... | ..+...+.+ ...|++
T Consensus 115 ~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~--s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v- 187 (407)
T PRK07179 115 ESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHM--SLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIVV- 187 (407)
T ss_pred CcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCH--HHHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEEE-
Confidence 356777666667766665554333 3555532 2221 11223344677665552 2 344455543 223333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+.+....+.+..+ -.|+-+|++|++.++|
T Consensus 188 -~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 188 -DSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred -CCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 4444333333332 4577788999986554
No 296
>PLN02509 cystathionine beta-lyase
Probab=30.68 E-value=4.9e+02 Score=29.93 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=47.9
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcchHHHHHhh----hccEEEEcc
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~DsAv~~~M~----~Vd~VlvGA 530 (658)
.|++-+...++ ..+..+...|. +|++ +.|.+.|. ++. ..+...|+.+.++.....-.+-. +..+|++ .
T Consensus 151 ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e 224 (464)
T PLN02509 151 AFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E 224 (464)
T ss_pred EEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E
Confidence 34433333444 33444444443 5665 44666664 344 44677899888874332222222 2222322 1
Q ss_pred eeEecCCCeecccchH----HHHHHHhhCCCCeEe
Q 006152 531 SSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 531 daV~aNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
...|..|.. .++-+||+|+++++|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 244555543 356678999988876
No 297
>PRK08636 aspartate aminotransferase; Provisional
Probab=30.67 E-value=4.7e+02 Score=28.64 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=54.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc---ch-----------HHHHHhh
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---IN-----------AISYIIH 521 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---Ds-----------Av~~~M~ 521 (658)
.+++|.|...++..++....+.| -.|+| + .|.+.+...+.+ ..|+.+..+. +. .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~g--d~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPG--DVAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCC--CEEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 58999999998866655444333 24444 4 388877665533 3677776653 12 1222232
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ----~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
++..+++- .-=-.-|.+++.-==..|+-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 23333331 0012224444444345677788999987764
No 298
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=30.63 E-value=83 Score=35.40 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=63.5
Q ss_pred cCCCEEEeeCCh---HHHH-HHHHHHHHcCCeeEEEEeC------------CCCCchHHHHH--HHHHhCCCc---EEEE
Q 006152 453 RDGDVLLTYGSS---SAVE-MILQHAHELGKQFRVVIVD------------SRPKHEGKLLL--RRLVRKGLS---CTYT 511 (658)
Q Consensus 453 ~dgdvILT~g~S---saV~-~vL~~A~e~gk~f~ViV~E------------SRP~~EG~~La--~eL~~~GI~---vT~I 511 (658)
.+..++||++.. +-+. .+|..+.+ .+.+.++|+- .-|.+.|...+ .+|.+.||+ =++|
T Consensus 50 ~~~tvfLtltgamisaGLr~~ii~~LIr-~g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~dv~i 128 (384)
T PRK00770 50 DGVTVGLTLSGAMTPAGFGVSALAPLIE-AGFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIYDIIF 128 (384)
T ss_pred cCCcEEEEeccchhhhhcChHHHHHHHH-cCCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCcccccCc
Confidence 556788898653 3466 67777776 4467888762 24777777544 788999964 3556
Q ss_pred cchHHHHHhhhccEEEEcce--eEecCCCeecccchH-------------HHHHHHhhCCCCeEeecc
Q 006152 512 HINAISYIIHEVTRVFLGAS--SVLSNGTVCSRVGTA-------------CVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 512 ~DsAv~~~M~~Vd~VlvGAd--aV~aNG~VvNKiGT~-------------~lAl~Ak~~~VPVyV~ae 564 (658)
+....-.+-+-++.++=+.. ..+.-+.++..+|-+ .+-..|..++|||||=+.
T Consensus 129 p~e~~~~~e~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~ 196 (384)
T PRK00770 129 DYDVLLETDAFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSP 196 (384)
T ss_pred ChHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCc
Confidence 54444333333444443332 112222222233333 233467778999998554
No 299
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=30.29 E-value=3.8e+02 Score=29.02 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=49.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH-------HHHHhhhccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIHEVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v~~~M~~Vd~Vlv 528 (658)
.+++|.|.+.++..++....+.|. +|+| + .|.+.+.... +...|..+..+.... +..+...+. -
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~ 164 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALL-L-DPGYPSHAGG--VYLAGGQIYPMPLRAENDFLPVFADIPTEVL---A 164 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHH--HHhcCCEEEEEECCCccCCCCCHHHHHHhhc---c
Confidence 578889998888655554444343 4444 3 3777665433 334677776664321 111111110 1
Q ss_pred cceeEecCCCeecccch-------HHHHHHHhhCCCCeE
Q 006152 529 GASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
+++.|+-+ .--|.+|+ -.|+-+|+.|++.++
T Consensus 165 ~~k~i~l~-~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 165 QARLMVLS-YPHNPTTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred cceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 22223222 13366666 356667888886554
No 300
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=30.25 E-value=7.3e+02 Score=27.95 Aligned_cols=97 Identities=22% Similarity=0.333 Sum_probs=57.1
Q ss_pred CCEEEeeCChHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHH-HHHHh-CCCcEEEEcc--h------HHHHHhh-h
Q 006152 455 GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLVR-KGLSCTYTHI--N------AISYIIH-E 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La-~eL~~-~GI~vT~I~D--s------Av~~~M~-~ 522 (658)
.++|+|-+-+..+..+...... ..+.-+|++.+-. +..-.+. .+|.+ .|+.+++|.. . ..-..+. +
T Consensus 85 ~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~E--H~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~ 162 (405)
T COG0520 85 DEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLE--HHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPK 162 (405)
T ss_pred CeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCc--chhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCC
Confidence 5688888888888555554411 1233677776643 2233334 45655 4999999982 2 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchH----HHHHHHhhCCCCeEe
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~----~lAl~Ak~~~VPVyV 561 (658)
...|.+. .+.|..|+. .|+-+||.+|+.|+|
T Consensus 163 Tklvais--------~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 163 TKLVALS--------HVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred ceEEEEE--------CccccccccchHHHHHHHHHHcCCEEEE
Confidence 3444333 355555654 588899999988887
No 301
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=30.17 E-value=6.5e+02 Score=26.18 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCe-eEEE---EeC-C---CCCc-----hHH----HHHHHHHhC-
Q 006152 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV---IVD-S---RPKH-----EGK----LLLRRLVRK- 504 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~-f~Vi---V~E-S---RP~~-----EG~----~La~eL~~~- 504 (658)
.++..+.++|.+ ..|+..|.+.+=..+++.+...|.. +.++ ++| + |-.+ -|+ .++++|.+.
T Consensus 21 ~~g~~~Q~~L~~-~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 21 GFDFDGQEKLKA-ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred hcCHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 356667777764 7888888876544556666666754 4443 222 1 1111 121 123556544
Q ss_pred -CCcEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 505 -GI~vT~I~----DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+.++.+. ...+..+++++|.||...|... --+.+.-+|+.+++||+.+
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 35554443 2234556789999998887432 2356777899999998864
No 302
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=30.04 E-value=6.6e+02 Score=26.66 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH---c-CCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-----HHHHHhh---
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHE---L-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----AISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e---~-gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-----Av~~~M~--- 521 (658)
+..+|+|.|.+.+...++..+.. . ++.-+|++.+. .+-+ +...+...|+++..+... .+..+.+
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~--~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~ 151 (373)
T TIGR03812 76 DAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPES--AHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID 151 (373)
T ss_pred CCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCc--chHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh
Confidence 44567777766555444433321 1 22346776552 2222 223345578888777521 1222222
Q ss_pred hcc--EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 522 EVT--RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd--~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+-+ .|++.. -...|.+. . --.|+-+||+++++++|=+
T Consensus 152 ~~~~~vv~~~~--~~~tG~~~-~--~~~i~~l~~~~~~~livD~ 190 (373)
T TIGR03812 152 DNTIGIVGIAG--TTELGQID-D--IEELSKIALENGIYLHVDA 190 (373)
T ss_pred hCcEEEEEECC--CCCCCccC-C--HHHHHHHHHHcCCeEEEEc
Confidence 212 222221 12334332 1 2357778999999887633
No 303
>PRK07589 ornithine cyclodeaminase; Validated
Probab=29.67 E-value=4.6e+02 Score=29.02 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHhcc--CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhcc
Q 006152 447 HAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 447 ~a~~~I~--dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd 524 (658)
.+.+++. +-.+++.+|.+..-..-++.+..-...-+|+|.. |=...-..++.++.+.|+++....+ +-.+..++|
T Consensus 119 la~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~-r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~AD 195 (346)
T PRK07589 119 LAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYD-IDPAATAKLARNLAGPGLRIVACRS--VAEAVEGAD 195 (346)
T ss_pred HHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe-CCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCC
Confidence 3444552 4578899999865433333322222334555553 3333345677888888888887543 556668899
Q ss_pred EEEEcc---e-------eEecCCCeecccchHH
Q 006152 525 RVFLGA---S-------SVLSNGTVCSRVGTAC 547 (658)
Q Consensus 525 ~VlvGA---d-------aV~aNG~VvNKiGT~~ 547 (658)
.|+.-. + ..+..|..+|-+|++.
T Consensus 196 IIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 196 IITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred EEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 888743 2 2446788888888765
No 304
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=29.59 E-value=3.2e+02 Score=27.34 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=57.2
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE-cc----hHHHHHhhh-----
Q 006152 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE----- 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~~M~~----- 522 (658)
.|.+||..|.+.-+...| +.+.++| .+|+++..+ ..+...+...+.+.|..+.++ +| ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~-~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRD-PAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCC-HHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 356788887766554434 3444555 577777543 334445556676666655544 22 334444443
Q ss_pred --ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC----CCCeEeeccc
Q 006152 523 --VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF----HIPVLVCCEA 565 (658)
Q Consensus 523 --Vd~VlvGAdaV~aNG~V-------------vNKiGT~~lAl~Ak~~----~VPVyV~aet 565 (658)
+|.||..|-.. ..+.. +|-.|++.+.-++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGMQ-FRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCCC-CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 56666654221 11111 4556777777655532 4455555443
No 305
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=29.56 E-value=2.6e+02 Score=27.82 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEE
Q 006152 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (658)
Q Consensus 448 a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vl 527 (658)
+-.++-.|.++++.||+.+=.++-+.++. ..-+|+|+|..|.. .+ +-...|..+.- +..++++.|.+|
T Consensus 16 ~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DPi~----al-qA~~dGf~v~~-----~~~a~~~adi~v 83 (162)
T PF00670_consen 16 ATNLMLAGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDPIR----AL-QAAMDGFEVMT-----LEEALRDADIFV 83 (162)
T ss_dssp HH-S--TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSHHH----HH-HHHHTT-EEE------HHHHTTT-SEEE
T ss_pred cCceeeCCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECChHH----HH-HhhhcCcEecC-----HHHHHhhCCEEE
Confidence 34466789999999999876666666654 44799999999942 22 22347887653 344567888776
Q ss_pred E
Q 006152 528 L 528 (658)
Q Consensus 528 v 528 (658)
.
T Consensus 84 t 84 (162)
T PF00670_consen 84 T 84 (162)
T ss_dssp E
T ss_pred E
Confidence 4
No 306
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=29.27 E-value=5.8e+02 Score=28.38 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 515 Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+..+|..+|+||. +.||.+ +=+-.+++|.+++=
T Consensus 289 ~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 289 AFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred hHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 35678888888743 467755 44677899998864
No 307
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=29.26 E-value=7.9e+02 Score=26.90 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=11.5
Q ss_pred HHHHHHhhCCCCeEeecccc
Q 006152 547 CVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 547 ~lAl~Ak~~~VPVyV~aety 566 (658)
.+.-+|+.|++.++ +=|.|
T Consensus 199 ~i~~l~~~~~~~li-vDea~ 217 (410)
T PRK13392 199 AICDLADRYNALTY-VDEVH 217 (410)
T ss_pred HHHHHHHHcCCEEE-EECCc
Confidence 46667888887544 33444
No 308
>PRK08363 alanine aminotransferase; Validated
Probab=29.25 E-value=3.7e+02 Score=29.27 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=29.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (658)
+...++++|.|.+.++..++....+.| -+|++. .|.+.+.... +...|..+..+
T Consensus 91 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~v~~ 144 (398)
T PRK08363 91 ITPDDVRVTAAVTEALQLIFGALLDPG--DEILIP--GPSYPPYTGL--VKFYGGVPVEY 144 (398)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHH--HHHcCCEEEEe
Confidence 344567888888877765555443333 345554 3666654432 22345544443
No 309
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.06 E-value=6.5e+02 Score=28.09 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=47.0
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
+.|+|-+-+.++..++....+.|. +|++ ..|.+.+. .+. ..+...|+.+..+... .+-..+. +...|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 445555555566444444443343 4444 34655543 233 3345667887777522 2323332 33334331
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
.---..|.+.. --.|+-+|+.|+++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 11122233221 23466678888887665
No 310
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.01 E-value=1.4e+02 Score=28.16 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=18.9
Q ss_pred ccCCCEEEeeCC---hHHHHHHHHHHHHcCC
Q 006152 452 IRDGDVLLTYGS---SSAVEMILQHAHELGK 479 (658)
Q Consensus 452 I~dgdvILT~g~---SsaV~~vL~~A~e~gk 479 (658)
++.||+++.++. |..+...++.|+++|-
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~ 131 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGM 131 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 789999999955 4566688889987664
No 311
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=28.93 E-value=1.5e+02 Score=33.03 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=42.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHH--hCCCc-EEEEcchHHHHHh--hhccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLV--RKGLS-CTYTHINAISYII--HEVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~--~~GI~-vT~I~DsAv~~~M--~~Vd~Vlv 528 (658)
.+||..|.+..-..+++.|.+.| ++|+++.+.+.. .+..++.+.. .-+.. -.|+...++-.+. .++|.|+-
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 36899999988778899998776 456666444332 3333331110 00000 0222212333332 26899988
Q ss_pred cceeEecCC
Q 006152 529 GASSVLSNG 537 (658)
Q Consensus 529 GAdaV~aNG 537 (658)
|.+-...|+
T Consensus 81 ~~~~~~e~~ 89 (451)
T PRK08591 81 GYGFLSENA 89 (451)
T ss_pred CCCccccCH
Confidence 876555554
No 312
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=28.92 E-value=5.6e+02 Score=28.07 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=49.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCcE----EEEc-ch-------HHHHH
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSC----TYTH-IN-------AISYI 519 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~v----T~I~-Ds-------Av~~~ 519 (658)
..++++|-|.+..+..++....+.+..-.+++++ ...+-....+ ..+...|+.+ .++. +. .+-.+
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~-~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~ 164 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLE-AKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDT 164 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEec-CCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHH
Confidence 4568888887777755555443333222233332 2223222222 2345668776 3442 21 33333
Q ss_pred hhhcc--EEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 520 IHEVT--RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 520 M~~Vd--~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+...+ .-+|-...+...-++++. --.|+-+||+||++|+|
T Consensus 165 ~~~~~~~t~lv~~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 165 IEKNGDDIAVILLSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHhcCCCeEEEEEeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 43211 112222223333233333 33477788999988876
No 313
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.81 E-value=2.8e+02 Score=27.51 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=52.7
Q ss_pred CCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE-cc----hHHHHHhhh------
Q 006152 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE------ 522 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~~M~~------ 522 (658)
|.+||+.|-+.-+..-| +.+.++| .+|+++..|.......+..++...|-.+.++ +| ..+..++.+
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45777777765544333 3444444 4666665666555666667777666554443 33 233444443
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhh
Q 006152 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYG 554 (658)
Q Consensus 523 -Vd~VlvGAdaV~aNG~V-------------vNKiGT~~lAl~Ak~ 554 (658)
+|.||-.|-. ...+.. .|..|++.++-.+..
T Consensus 82 ~id~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666664421 111111 566778777766654
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.75 E-value=4.5e+02 Score=30.51 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=46.2
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-------------HH---HHHHHhCCCcEEEEc---
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-------------LL---LRRLVRKGLSCTYTH--- 512 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-------------~L---a~eL~~~GI~vT~I~--- 512 (658)
+..|+.|+.+|-+.+=..+...+.+.|. +|+|+|.++...|. .+ ...+.+.|+.+.+-+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4678999999998762244455555564 68889876654321 11 234567887765422
Q ss_pred -chHHHHHhhhccEEEEcc
Q 006152 513 -INAISYIIHEVTRVFLGA 530 (658)
Q Consensus 513 -DsAv~~~M~~Vd~VlvGA 530 (658)
|-....+....|.||+..
T Consensus 212 ~~~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAI 230 (564)
T ss_pred CcCCHHHHHhhCCEEEEee
Confidence 212333444688888744
No 315
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.71 E-value=1.7e+02 Score=31.37 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=41.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEEEeC-CCCCchHHHHHHHHHhCCCcEEEEcch---------HHHHHhh--h
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH--E 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~ViV~E-SRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~~M~--~ 522 (658)
-.||..|+++.++.+|. +.+.|. ..+|.++= .++...+ ...+.||||.++... .+...++ +
T Consensus 92 i~vl~Sg~gsnl~al~~-~~~~~~~~~~i~~visn~~~~~~-----lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK06027 92 VVILVSKEDHCLGDLLW-RWRSGELPVEIAAVISNHDDLRS-----LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQ 165 (286)
T ss_pred EEEEEcCCCCCHHHHHH-HHHcCCCCcEEEEEEEcChhHHH-----HHHHhCCCEEEeccCccccchhHHHHHHHHHHhC
Confidence 46788888999977555 455554 35544433 3443332 156679999987522 2233343 5
Q ss_pred ccEEEEcc-eeEe
Q 006152 523 VTRVFLGA-SSVL 534 (658)
Q Consensus 523 Vd~VlvGA-daV~ 534 (658)
+|.+++.. -+|+
T Consensus 166 ~Dlivlagy~~il 178 (286)
T PRK06027 166 PDLVVLARYMQIL 178 (286)
T ss_pred CCEEEEecchhhc
Confidence 77776643 3443
No 316
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=28.49 E-value=2.7e+02 Score=26.83 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCCCchHHHHHHHHHhCCCcEEEEcch--HHHHHhhhccEEEEcc
Q 006152 488 SRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGA 530 (658)
Q Consensus 488 SRP~~EG~~La~eL~~~GI~vT~I~Ds--Av~~~M~~Vd~VlvGA 530 (658)
.|=..-|+.|+..|.+.|..++..... .+...++++|.|+...
T Consensus 35 Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 35 GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 444455777777777777777766521 2456778899887653
No 317
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=28.48 E-value=3.7e+02 Score=24.97 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=54.6
Q ss_pred EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC---------C-Cc----hHH----HHHHHHHhC--CCcEEEEcch---
Q 006152 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------P-KH----EGK----LLLRRLVRK--GLSCTYTHIN--- 514 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR---------P-~~----EG~----~La~eL~~~--GI~vT~I~Ds--- 514 (658)
|+..|.+.+=..+++.+...|.. ++.++|.. - +. -|+ .+++.|.+. ++.++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 56677765544455555555653 33333321 1 11 122 123445443 4555555432
Q ss_pred -HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 515 -AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 515 -Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.....+.+.|.||.+.|.. --...+.-.|+.+++||+.+.-
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2235567889888887652 2356677889999999998755
No 318
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=28.44 E-value=2e+02 Score=30.80 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=42.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEE-EEeCCCCCchHHHHHHHHHhCCCcEEEEcc---------hHHHHHhh--h
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGK-QFRV-VIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--E 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~V-iV~ESRP~~EG~~La~eL~~~GI~vT~I~D---------sAv~~~M~--~ 522 (658)
-.||.-|+++.++.+|. +++.|. ..+| .|+-.+|..++ ...+.|||+.++.. ..+...|+ +
T Consensus 87 i~vl~Sg~g~nl~~l~~-~~~~g~l~~~i~~visn~~~~~~-----~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~ 160 (280)
T TIGR00655 87 VAILVSKEDHCLGDLLW-RWYSGELDAEIALVISNHEDLRS-----LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQ 160 (280)
T ss_pred EEEEEcCCChhHHHHHH-HHHcCCCCcEEEEEEEcChhHHH-----HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhC
Confidence 35777899999977555 555565 3443 34556666655 25678999998764 22333344 5
Q ss_pred ccEEEEc
Q 006152 523 VTRVFLG 529 (658)
Q Consensus 523 Vd~VlvG 529 (658)
+|.+++.
T Consensus 161 ~Dlivla 167 (280)
T TIGR00655 161 VDLVVLA 167 (280)
T ss_pred CCEEEEe
Confidence 7777664
No 319
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=28.38 E-value=5.6e+02 Score=28.96 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCEEEeeCChHH-HHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc--------hHHHHHhh---
Q 006152 454 DGDVLLTYGSSSA-VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--- 521 (658)
Q Consensus 454 dgdvILT~g~Ssa-V~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D--------sAv~~~M~--- 521 (658)
+++++|..|.++. +|..+....+ +.-+|+|+..--+ |.+++.-+...|.++..+.- ..+...+.
T Consensus 55 ~~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~F--G~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~ 130 (383)
T COG0075 55 NGDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGKF--GERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDP 130 (383)
T ss_pred CCcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCChH--HHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC
Confidence 4588888787764 7777777764 3446777766544 77888888889998887754 35555565
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+++.|.+ .|+=.+- +++|.+.. ||-+||.|+.=++|=|
T Consensus 131 ~~~~V~~-vH~ETST-Gvlnpl~~--I~~~~k~~g~l~iVDa 168 (383)
T COG0075 131 DIKAVAV-VHNETST-GVLNPLKE--IAKAAKEHGALLIVDA 168 (383)
T ss_pred CccEEEE-EeccCcc-cccCcHHH--HHHHHHHcCCEEEEEe
Confidence 3444433 3333444 47887655 8889999988888733
No 320
>PLN00175 aminotransferase family protein; Provisional
Probab=28.20 E-value=6e+02 Score=28.12 Aligned_cols=91 Identities=13% Similarity=0.178 Sum_probs=50.7
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch---------HHHHHh-hhccE
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVTR 525 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds---------Av~~~M-~~Vd~ 525 (658)
.+++|.|.+.++..++......| -.|+|.+ |.+.+...+ +...|+.+..+... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57888888888755555443333 4666654 777665433 44578877777421 111111 13333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeE
Q 006152 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVL 560 (658)
Q Consensus 526 VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVy 560 (658)
|++ . ..-|..|+. .++-+|+.|++.++
T Consensus 191 i~i------~--~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 191 ILI------N--TPHNPTGKMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred EEe------c--CCCCCCCcCCCHHHHHHHHHHHHHcCcEEE
Confidence 332 1 234666664 46777888887544
No 321
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=28.12 E-value=4.1e+02 Score=28.58 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=51.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH----------HHHHhh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----------ISYIIH 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA----------v~~~M~ 521 (658)
+...++|+|.|.+.++..++. +.. + . +|++ ..|.+.... ..+...|+.+..+.... ...+..
T Consensus 69 ~~~~~i~it~Ga~~~l~~~~~-~~~-~-~-~v~i--~~P~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (354)
T PRK06358 69 LDLENVILGNGATELIFNIVK-VTK-P-K-KVLI--LAPTFAEYE--RALKAFDAEIEYAELTEETNFAANEIVLEEIKE 140 (354)
T ss_pred CChhhEEECCCHHHHHHHHHH-HhC-C-C-cEEE--ecCChHHHH--HHHHHcCCeeEEEeCccccCCCccHHHHHhhcc
Confidence 455678899888888755444 442 2 2 5554 345554433 33456787777764211 111222
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
+++.|++ .|= -|.+|+. .++-+|+.|++.+++
T Consensus 141 ~~~~v~~------~~P--~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 141 EIDLVFL------CNP--NNPTGQLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CCCEEEE------eCC--CCCCCCccCHHHHHHHHHHHHhcCCEEEE
Confidence 3444433 121 3666644 456678888886654
No 322
>PRK10116 universal stress protein UspC; Provisional
Probab=28.05 E-value=4.5e+02 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=26.1
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
.+|+|++|.+.--. ..+.+. ...-+.++.++||+|+
T Consensus 102 ~~DLiV~g~~~~~~----~~~~~s-~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 102 HFDLVICGNHNHSF----FSRASC-SAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCEEEEcCCcchH----HHHHHH-HHHHHHhcCCCCEEEE
Confidence 79999999986522 444452 2345788899999997
No 323
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=27.85 E-value=1.2e+02 Score=33.06 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=35.8
Q ss_pred HHHHHHhccC-CCEEEeeCChHHHHHHHHHHHHc----C----CeeEEEEeCCCCCchHH----HHHHHHHhCCCc
Q 006152 445 VKHAVTKIRD-GDVLLTYGSSSAVEMILQHAHEL----G----KQFRVVIVDSRPKHEGK----LLLRRLVRKGLS 507 (658)
Q Consensus 445 a~~a~~~I~d-gdvILT~g~SsaV~~vL~~A~e~----g----k~f~ViV~ESRP~~EG~----~La~eL~~~GI~ 507 (658)
+++.++++.+ .++|+||||+.-|..+++. ++. . ..+.+.+.+|-= .=|. .|..+|...|++
T Consensus 32 a~~i~~l~~~g~e~VitHGNGPQVG~l~lq-~~aa~~~~~~p~~PLd~~~AmsQG-~IGy~l~qal~n~l~~~~~~ 105 (312)
T COG0549 32 AEQIADLIASGYEVVITHGNGPQVGLLLLQ-NEAADSEKGVPAYPLDVLVAMSQG-MIGYMLQQALRNELPRRGLE 105 (312)
T ss_pred HHHHHHHHhcCCeEEEEcCCCchHHHHHHH-hhhhccccCCCCccHHHHhHhhhh-HHHHHHHHHHHHHHhhcCCC
Confidence 4455567777 5899999999998554443 222 1 234455555432 1133 334667778875
No 324
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.78 E-value=4e+02 Score=23.61 Aligned_cols=38 Identities=16% Similarity=-0.036 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 492 ~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
.+-.++++.+.+.|+++..|+++.-..+-+-+|.+|.-
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~ 111 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLV 111 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEc
Confidence 34556778889999999999988766665668877754
No 325
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=27.69 E-value=7.9e+02 Score=26.43 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHH----cCCeeEEEEeCC-CCCchHHHHHHHHHhCCCcEEEEcch--------HHHHHh
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYII 520 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e----~gk~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~Ds--------Av~~~M 520 (658)
...+++|.|.+.++..+++.+.. ....-+|++.+. -|-+.. ....+...|+++.++... .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34677777766666555554321 122235666553 232222 224456689988888521 122222
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 521 ~-~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. +...|++ ...=...|.+.. + ..|+-+|+.|+++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2233333 211112333332 2 3577788899987775
No 326
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=27.63 E-value=7.9e+02 Score=27.53 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC--CCCchHHHHHHHHHhCCCcEE
Q 006152 432 FINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--RPKHEGKLLLRRLVRKGLSCT 509 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES--RP~~EG~~La~eL~~~GI~vT 509 (658)
+++++.......+-.| .++. | .+..+++...+..+.+-+.+.|-..-.+++.. +++. ......|...|+.+.
T Consensus 261 ~~~~e~~~~~~~ld~~--~~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~v~ 334 (416)
T cd01980 261 VANEEKAAAKGAIRAF--SPIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVEVR 334 (416)
T ss_pred HHHHHHHHHHHHHhhH--HhhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCccc
Confidence 3434334444444334 2454 5 56667766555566666667676654444432 2222 233334544555433
Q ss_pred EEcch-HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 510 YTHIN-AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 510 ~I~Ds-Av~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+-.|- ..-..++ ++|++| .| +....+|++.+||++-+.-
T Consensus 335 ~~~~~~~~~~~~~~~~pDl~I-------g~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 335 YRKSLEDDIAAVEEYRPDLAI-------GT---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCHHHHHHHHhhcCCCEEE-------eC---------ChhhHHHHHhCCCEEEecC
Confidence 22221 1122222 455554 22 2245689999999987654
No 327
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=27.24 E-value=6.3e+02 Score=27.49 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=52.5
Q ss_pred EEEeeCChHHHHHHHHHHH--HcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc----h------HHHHHhh---
Q 006152 457 VLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----N------AISYIIH--- 521 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~--e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----s------Av~~~M~--- 521 (658)
+|+|.|.+.++..++.... +.|. +|+| ++ |.+.+...+.+ ..|+.+..+.. . .+-..+.
T Consensus 97 v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv-~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~ 170 (396)
T PRK09257 97 TVQTPGGTGALRVGADFLKRAFPDA--KVWV-SD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAP 170 (396)
T ss_pred EEecCCccHHHHHHHHHHHHhCCCC--eEEE-CC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCC
Confidence 3889999988755543222 3342 3444 43 77777655433 46777666541 1 2222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+++++=..-=-..|.++++-=--.|+-+|++|++.++.
T Consensus 171 ~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 171 AGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 1134444332223334444444456777788999987654
No 328
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=27.14 E-value=1.9e+02 Score=31.89 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=32.8
Q ss_pred HHHcCCe---eEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHh
Q 006152 474 AHELGKQ---FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 474 A~e~gk~---f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M 520 (658)
|...||. ++|+|+| ||+++ .|..++++.|..+.+|+|.-++-.+
T Consensus 146 A~algk~~~dltV~vLd-RpRH~--~lI~eiR~~Gari~Li~DGDVa~ai 192 (321)
T TIGR00330 146 AKALGKPLSDLTVTILA-KPRHD--AVIAEMQQLGVRVFAIPDGDVAASI 192 (321)
T ss_pred HHHcCCChhHeEEEEEc-CchHH--HHHHHHHHcCCeEEEeccccHHHHH
Confidence 3334554 5666666 89886 4789999999999999997765554
No 329
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=27.01 E-value=4.1e+02 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=20.7
Q ss_pred HHHHHHHHhccCC-CEEEeeCChHHHHHHHH
Q 006152 443 VIVKHAVTKIRDG-DVLLTYGSSSAVEMILQ 472 (658)
Q Consensus 443 ~Ia~~a~~~I~dg-dvILT~g~SsaV~~vL~ 472 (658)
.++++.++++..| .+|||||++-.|...+.
T Consensus 30 ~~a~~ia~l~~~g~~vviv~gngpqvG~~~l 60 (310)
T TIGR00746 30 QTAPQIAKLIKRGYELVITHGNGPQVGNLLL 60 (310)
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHHh
Confidence 3455556677654 79999999988854433
No 330
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=27.00 E-value=2.3e+02 Score=32.00 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=57.0
Q ss_pred CCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 455 gdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
..+||..|-+--|..- +..+.++| .+|++++.........+ ..+.. ...++++........+.++|.||--|-..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~-~~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENL-VHLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHh-hhhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 4678888775444333 33444444 57777764321111111 11211 12344554333333455788887766322
Q ss_pred ecCCC--------eecccchHHHHHHHhhCCCCeEeeccc
Q 006152 534 LSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 534 ~aNG~--------VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
..... -.|-.||..+.-+|+.+++.|+.+.-+
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 11000 167889999999999999876665443
No 331
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=26.88 E-value=4.8e+02 Score=26.40 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds 514 (658)
.+.+|++.+.|.....+-..|...|.++.|++.+.-| ..-...|...|..+..+..+
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~----~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGAS----PEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHCCCEEEEECCC
Confidence 3578888877766656666666678888888776543 12235566678777777543
No 332
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=26.79 E-value=1.7e+02 Score=24.05 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHcCC-eeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHh
Q 006152 470 ILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (658)
Q Consensus 470 vL~~A~e~gk-~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M 520 (658)
.+.+|.+.+. -.+||+.+..-...-..+...+.+.||++.++.+.-+..+-
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 4556666665 45788888833333457778889999999999887765543
No 333
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=26.76 E-value=6.7e+02 Score=26.07 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHH----hhhccEEEEcceeEecC
Q 006152 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSN 536 (658)
Q Consensus 464 SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~----M~~Vd~VlvGAdaV~aN 536 (658)
+...+.++.+|++ .+.++-|=|--|. +|.+..+.|.+.||+|.....-.+... ...++.|=....|+-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 3345566777765 3444433344343 899999999999999876655444333 23556655555555554
Q ss_pred CCeecccchHHHHH---HHhhCCCCeEeeccccc
Q 006152 537 GTVCSRVGTACVAM---VAYGFHIPVLVCCEAYK 567 (658)
Q Consensus 537 G~VvNKiGT~~lAl---~Ak~~~VPVyV~aetyK 567 (658)
|. -|.-.+.- +-+.|+.+.=|++-++|
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 43 23222222 22245666666666654
No 334
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=26.75 E-value=5.5e+02 Score=26.76 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=47.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHH-HHHhCCCcEEEEcc-------hHHHHHhhh---
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR-RLVRKGLSCTYTHI-------NAISYIIHE--- 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~-eL~~~GI~vT~I~D-------sAv~~~M~~--- 522 (658)
..+.|+|.+-+.++..+|.... ++.-.|++.+ |.+....... ...-.|+++..+.. ..+...+.+
T Consensus 47 ~~~~~~~~~gt~a~~~~~~~l~--~~gd~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~~~ 122 (338)
T cd06502 47 KEAALFVPSGTAANQLALAAHT--QPGGSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAIRPRDD 122 (338)
T ss_pred CCeEEEecCchHHHHHHHHHhc--CCCCeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHhhccCC
Confidence 4577777776666655554443 3334566644 3332211111 11126777766642 233333332
Q ss_pred -----ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 523 -----VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 -----Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
..+|++- .....|+++..---..++-+|+.|++.++|
T Consensus 123 ~~~~~~~~v~l~--~p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 123 IHFPPPSLVSLE--NTTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CcCCcceEEEEE--eecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 2233321 122224444322223466677888887776
No 335
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=26.68 E-value=2.9e+02 Score=30.12 Aligned_cols=107 Identities=9% Similarity=-0.042 Sum_probs=55.7
Q ss_pred hccCCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc----hHHHHHhhhccE
Q 006152 451 KIRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTR 525 (658)
Q Consensus 451 ~I~dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----sAv~~~M~~Vd~ 525 (658)
+...+.+||..|.+--|..-| ..+.++| ++|++++-++.. ..... ..++.. +..| ..+..++.++|.
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~----~~~~~-~~~~~~-~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE----HMSED-MFCHEF-HLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc----ccccc-cccceE-EECCCCCHHHHHHHHhCCCE
Confidence 455678888888754443333 3333444 567766533210 00000 011221 2223 234445678898
Q ss_pred EEEcceeEe------cCCC---eecccchHHHHHHHhhCCCCeEeeccc
Q 006152 526 VFLGASSVL------SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 526 VlvGAdaV~------aNG~---VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
||--|-.+. .+-. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 876553221 1111 136779999999999999865554433
No 336
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.60 E-value=3.2e+02 Score=26.06 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=25.3
Q ss_pred EEEeeCChHHHHHHHHHHHHcC-CeeEEEEeCCCCCchHHHHHHHH
Q 006152 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRL 501 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~g-k~f~ViV~ESRP~~EG~~La~eL 501 (658)
+|.||.....+..+|....++. ..++|||+|....-+-...++++
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~ 47 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSL 47 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHh
Confidence 4666666666666666665543 24667776655444433444333
No 337
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=26.59 E-value=1.1e+02 Score=32.09 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=59.8
Q ss_pred HHHhccCCCE---EEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhcc
Q 006152 448 AVTKIRDGDV---LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (658)
Q Consensus 448 a~~~I~dgdv---ILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd 524 (658)
..++|+.+|. |--+|+=. -+++... .+|.||+.|-.|.+--+ -..+|.....+++++|
T Consensus 106 il~li~~~d~IkmI~~fg~m~---p~v~~l~---ek~~v~~~er~~~~pkr-------------~t~~d~~e~~iLP~~D 166 (250)
T COG2014 106 ILDLIQRDDKIKMIAEFGNMP---PVVRTLK---EKFEVYVFERNPKLPKR-------------GTLSDTLEYQILPEVD 166 (250)
T ss_pred HHHHHcCCCceeEEEecCCCC---hHHHHhh---hheEEEEeccCccCccc-------------ccccchhhhhhccccc
Confidence 3456777764 45556622 2233332 58999999877765322 1467888889999999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCC-CCeEeecccccccccc
Q 006152 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVCCEAYKFHERV 572 (658)
Q Consensus 525 ~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~-VPVyV~aetyKf~~~~ 572 (658)
.+++.|.++. || |.-.- ++++-+ .=|+...||--+.+.+
T Consensus 167 vii~SaStlv-N~-------T~d~~-Ld~ak~ak~vvl~GPTa~l~pe~ 206 (250)
T COG2014 167 VIIASASTLV-NG-------TLDMI-LDRAKKAKLVVLTGPTAQLLPEF 206 (250)
T ss_pred EEEEechhhh-cC-------cHHHH-HhhhccCcEEEEeCCCcccchhH
Confidence 9999998876 55 33332 344433 3344556666555443
No 338
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.51 E-value=3.6e+02 Score=28.37 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=58.0
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc--c-hHHHHHhhhccEEEEccee
Q 006152 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~--D-sAv~~~M~~Vd~VlvGAda 532 (658)
+||..|-+-.+.. +++.+.++|. +|+++. |.. + . +..|...|+.+.... | ..+..+++.+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~-R~~-~--~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY--QVRCLV-RNL-R--K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC--eEEEEE-cCh-H--H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5777776544443 3445556664 555553 221 1 1 234445576654422 2 3566677889988864432
Q ss_pred EecCCC---eecccchHHHHHHHhhCCCCeEeeccc
Q 006152 533 VLSNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 533 V~aNG~---VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
...+.. -+|..||..+.-+|++++|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 135678889999999999876665444
No 339
>PRK15029 arginine decarboxylase; Provisional
Probab=26.51 E-value=2.6e+02 Score=34.34 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=55.0
Q ss_pred EEEEeCCCCCc-------hHHHHHHHHHhCCCcEEEEcc--hHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHH
Q 006152 482 RVVIVDSRPKH-------EGKLLLRRLVRKGLSCTYTHI--NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (658)
Q Consensus 482 ~ViV~ESRP~~-------EG~~La~eL~~~GI~vT~I~D--sAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl 550 (658)
+|+++|.-+.. -...|...|.+.|..|....+ .+...+-. ..|+||+ |..+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57778777642 344556889999999998875 34444433 4899999 56677766332 11222222
Q ss_pred HHh-hCCCCeEeeccccccccccc
Q 006152 551 VAY-GFHIPVLVCCEAYKFHERVQ 573 (658)
Q Consensus 551 ~Ak-~~~VPVyV~aetyKf~~~~~ 573 (658)
+-+ ..++|||+++..-+-.++++
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~ 102 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMD 102 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCC
Confidence 322 35899999987664333333
No 340
>PRK09982 universal stress protein UspD; Provisional
Probab=26.50 E-value=5.2e+02 Score=23.87 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=23.3
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|.+++|.+ . +++-.-.| .--=+.++-++||+|+
T Consensus 103 ~aDLIVmG~~---~-~~~~~~~~--va~~V~~~s~~pVLvv 137 (142)
T PRK09982 103 QCDLLVCGHH---H-SFINRLMP--AYRGMINKMSADLLIV 137 (142)
T ss_pred CCCEEEEeCC---h-hHHHHHHH--HHHHHHhcCCCCEEEe
Confidence 6999999964 2 22322233 3334778889999997
No 341
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=26.48 E-value=5.1e+02 Score=24.18 Aligned_cols=104 Identities=22% Similarity=0.205 Sum_probs=49.3
Q ss_pred CEEEeeCC---hHHHHHHHHHHHHcCC-eeEEEEeCC-CCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 456 DVLLTYGS---SSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~---SsaV~~vL~~A~e~gk-~f~ViV~ES-RP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
|+++-++- |+++..++. +.+. ++.++.++. -...+..+.++++.+.|+++..+....-...-.....+....
T Consensus 3 d~~v~lSGG~DSs~ll~l~~---~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLK---EKYGLNPLAVTVDNGFNSEEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFKAKV 79 (154)
T ss_pred CEEEECCCchhHHHHHHHHH---HHhCCceEEEEeCCCCCCHHHHHHHHHHHHhCCCeEEEecCHHHHHHHHHHHHhccc
Confidence 56666655 455533333 3332 444333343 223445666777765588876554322211111111110000
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeEeeccc
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+.. -...++.-...+.-+|+.+|+++++.++.
T Consensus 80 ~~p---~~~~~~~~~~~~~~~A~~~g~~~il~G~~ 111 (154)
T cd01996 80 GDP---CWPCDTAIFTSLYKVALKFGIPLIITGEN 111 (154)
T ss_pred CCC---ChhhhHHHHHHHHHHHHHhCcCEEEeCcC
Confidence 000 01123344445666899999999987763
No 342
>PRK02948 cysteine desulfurase; Provisional
Probab=26.46 E-value=8.3e+02 Score=26.23 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=48.9
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHc--CCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcch-----HHHHH---hhh
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN-----AISYI---IHE 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~--gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~Ds-----Av~~~---M~~ 522 (658)
...+++|-|.+.++..++..+.+. +..-+|++.+ ..+-.... .+.+...|+++..+... -+..+ +.+
T Consensus 60 ~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 60 EQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 345667766555555545444321 2223454432 23323222 34566789888888521 12222 221
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-+++|+=...-...|.+.. + -.|+-+|+.+++.|+|=
T Consensus 138 ~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~vivD 174 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHSD 174 (381)
T ss_pred CCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEEE
Confidence 1222222222222344433 2 24677788899877653
No 343
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=26.38 E-value=8.3e+02 Score=26.88 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 505 GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+..+..+.+.+ ..+|..+|.+|+=+ ||..+ =|-.+|+|++++.
T Consensus 251 ~~~v~~~~~~~-~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~y 293 (385)
T TIGR00215 251 DLQLHLIDGDA-RKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVGY 293 (385)
T ss_pred CCcEEEECchH-HHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEEE
Confidence 45666665544 46888999987655 66554 5667899999983
No 344
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=26.35 E-value=92 Score=27.81 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.|..||..|.+.+-..-++.+.+.|-+.+||-.+. .. .+..+ +++.... ...|..+++|++-.+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~----~~~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EF----SEGLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HH----HHTSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hh----hhhHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 47789999999877666777777777666665554 11 11222 2333322 2335567777654322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..-.-.++..|+.+++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2233568889999999999874
No 345
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=26.22 E-value=1.8e+02 Score=29.59 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=20.4
Q ss_pred ecccchHHHHHHHhhCCCCeEeecccc
Q 006152 540 CSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 540 vNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.|-.||..++-+|+.+++.|+.+...+
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~~ 102 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTDY 102 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 456789999989988888877665543
No 346
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.07 E-value=8e+02 Score=25.96 Aligned_cols=105 Identities=23% Similarity=0.224 Sum_probs=61.1
Q ss_pred CEEEeeCC---hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEE-EcchHH----HHHhhh-ccEE
Q 006152 456 DVLLTYGS---SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINAI----SYIIHE-VTRV 526 (658)
Q Consensus 456 dvILT~g~---SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~-I~DsAv----~~~M~~-Vd~V 526 (658)
-++|||.| ..-+++++..+.+.|-. -|+|.| -|..|..++...+.+.|+.... ++-+.- ..+.+. -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipD-Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPD-LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECC-CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 47899886 34578899999887642 344444 4667888888999999997766 554442 222222 2333
Q ss_pred EE-cceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 527 FL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 527 lv-GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
-+ +--.+.-...-...-....+..+.++.++|++|=
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 22 2111111001112223345666777779999874
No 347
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=26.00 E-value=2e+02 Score=27.20 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=42.9
Q ss_pred EEEeCCCCC-----chHHHHHHHHHhCCCcE-E-EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006152 483 VVIVDSRPK-----HEGKLLLRRLVRKGLSC-T-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 483 ViV~ESRP~-----~EG~~La~eL~~~GI~v-T-~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~ 555 (658)
.|++-+.|+ .+|.+++..+.+.|.++ + ...+.+|..+.+.. ...+.-.|- +-....++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~~~n~--~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASDEFDL--VRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchhhhhH--HHHHHHHHHhc
Confidence 456667787 46777788888888763 2 22344554444322 112211111 34556788889
Q ss_pred CCCeEeecccc
Q 006152 556 HIPVLVCCEAY 566 (658)
Q Consensus 556 ~VPVyV~aety 566 (658)
+|++|||...-
T Consensus 72 ~v~l~vC~~~a 82 (128)
T PRK00207 72 GVALNVCVAAA 82 (128)
T ss_pred CCEEEEeHHHH
Confidence 99999998764
No 348
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=25.92 E-value=2.8e+02 Score=31.88 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCCCEEEeeCC-------hHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch
Q 006152 443 VIVKHAVTKIRDGDVLLTYGS-------SSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~-------SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds 514 (658)
+.++...+.|..+..|+.|+. |+++ +..+ .+.|..+.+++....=..-| ....+...+.+..+++|+
T Consensus 24 ~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ai---l~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD~ 98 (491)
T COG0608 24 KAAARIAEAIEKGEKILIYGDYDADGITSAAI---LAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVDN 98 (491)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCcccHHHHHH---HHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCCEEEEECC
Confidence 345555667888888888865 3333 3333 33589999999876655555 335788999999999998
Q ss_pred HHHHHhh--h-----ccEEEEcce
Q 006152 515 AISYIIH--E-----VTRVFLGAS 531 (658)
Q Consensus 515 Av~~~M~--~-----Vd~VlvGAd 531 (658)
..+++=. . +|.||+==|
T Consensus 99 G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 99 GSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred CcccHHHHHHHHhCCCcEEEECCC
Confidence 8776632 2 566665444
No 349
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=25.75 E-value=74 Score=24.75 Aligned_cols=27 Identities=44% Similarity=0.423 Sum_probs=19.5
Q ss_pred chhhccHHHHHHHHHHHHHHHHHHhhc
Q 006152 191 LKEKTSKAERRAIQEAQRAAKAAAKAE 217 (658)
Q Consensus 191 ~~~~~~kaerra~qe~qraakaa~k~~ 217 (658)
.|.+...|-|.+.-|.||||.+++..+
T Consensus 3 eK~kaaEa~k~aEaeKqraAEA~k~aE 29 (42)
T PF07046_consen 3 EKRKAAEATKVAEAEKQRAAEATKAAE 29 (42)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888888888888776544
No 350
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=25.70 E-value=2.2e+02 Score=27.54 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHHHHHHHcCCeeEEEEeCC
Q 006152 469 MILQHAHELGKQFRVVIVDS 488 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ES 488 (658)
.++....+.....+++..+.
T Consensus 43 ~~~~~~~~~~~~i~~~~~~~ 62 (224)
T cd06442 43 EIVRELAKEYPRVRLIVRPG 62 (224)
T ss_pred HHHHHHHHhCCceEEEecCC
Confidence 34444333344444444443
No 351
>PRK15456 universal stress protein UspG; Provisional
Probab=25.58 E-value=1.9e+02 Score=26.50 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=25.4
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
++|+|++|.+. -..+.. -+|+-.-. +.++.++||+|+
T Consensus 105 ~~DLIVmG~~g-~~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRN-PSISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCC-CCccce--ecCccHHH-HHHcCCCCEEEe
Confidence 79999999986 222222 25765444 477788999986
No 352
>PRK05942 aspartate aminotransferase; Provisional
Probab=25.56 E-value=4.5e+02 Score=28.66 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=50.6
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-chH------HHHHhh----hcc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH----EVT 524 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-DsA------v~~~M~----~Vd 524 (658)
.+|+|.|.+.++..++....+.|. +|+|. .|.+.+...+ +...|+.+..+. |.. +..+.. ++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 172 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPGD--VVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAK 172 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccccce
Confidence 467788888888665554444443 45554 4777664433 234688776663 211 111212 344
Q ss_pred EEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 525 RVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 525 ~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
.|++ + ..-|..|+. .++-+|++|++.+++
T Consensus 173 ~i~l-------~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 173 ILYF-------N-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred EEEE-------c-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4443 3 234555554 566678899885543
No 353
>PRK12342 hypothetical protein; Provisional
Probab=25.55 E-value=3.6e+02 Score=28.60 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=56.1
Q ss_pred EEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHH---HHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEccee
Q 006152 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGK---LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (658)
Q Consensus 457 vILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~---~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAda 532 (658)
+++|+|..++-.. ++++|...|-.--|.+.+ | .+.|. ..++.|.. ++-.. ..|.||.|-.+
T Consensus 55 tvls~Gp~~a~~~~l~r~alamGaD~avli~d-~-~~~g~D~~ata~~La~-----------~i~~~--~~DLVl~G~~s 119 (254)
T PRK12342 55 AALTVGGSLLQNSKVRKDVLSRGPHSLYLVQD-A-QLEHALPLDTAKALAA-----------AIEKI--GFDLLLFGEGS 119 (254)
T ss_pred EEEEeCCChHhHHHHHHHHHHcCCCEEEEEec-C-ccCCCCHHHHHHHHHH-----------HHHHh--CCCEEEEcCCc
Confidence 5789998775444 568788888765555543 3 23332 22344433 11111 48999999777
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeEeeccccccc
Q 006152 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (658)
Q Consensus 533 V~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~ 569 (658)
+-.+.+. .=+++|...++|++-.+...++.
T Consensus 120 ~D~~tgq-------vg~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 120 GDLYAQQ-------VGLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred ccCCCCC-------HHHHHHHHhCCCcEeeEEEEEEe
Confidence 6544331 23578999999999777666554
No 354
>PRK14852 hypothetical protein; Provisional
Probab=25.55 E-value=7.3e+02 Score=31.57 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeC------C---CCC--ch-
Q 006152 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------S---RPK--HE- 493 (658)
Q Consensus 426 ~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~E------S---RP~--~E- 493 (658)
.+.-+.|.+++.......|+..+.++++ +.+|+..|.+-+=..++......|.. ++.++| | |-. .+
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 3555667666433223345666677776 47888888875433345555556754 222222 1 211 11
Q ss_pred --HH----HHHHHHHh--CCCcEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 494 --GK----LLLRRLVR--KGLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 494 --G~----~La~eL~~--~GI~vT~I~----DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
|+ -+++.|.+ -.++++.+. ...+..++..+|.||-+.|.+..+ +--+... .|..++|||+-
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~------~rr~l~~-~c~~~~IP~I~ 454 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALD------IRRRLFN-RALELGIPVIT 454 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHH------HHHHHHH-HHHHcCCCEEE
Confidence 21 22355664 346666653 345666778999999887764211 2223333 36889999997
Q ss_pred ecc
Q 006152 562 CCE 564 (658)
Q Consensus 562 ~ae 564 (658)
++.
T Consensus 455 ag~ 457 (989)
T PRK14852 455 AGP 457 (989)
T ss_pred eec
Confidence 654
No 355
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=25.52 E-value=1.7e+02 Score=32.40 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=37.1
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEcceeE
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAdaV 533 (658)
.||.+|.+..-..+...+++.+...+||| -|.+.|..+.-+ .+...+.....+-.+.+ ++|.|+.|.+..
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~~----~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 73 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYV---APGNAGTALLAE----NVVIDVTDIEALVAFAKEEGIDLTVVGPEAP 73 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhcc----ccCCCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68999988654355556665543346666 456666544311 12211122223333333 478888877654
No 356
>PLN00203 glutamyl-tRNA reductase
Probab=25.51 E-value=3.9e+02 Score=31.28 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=44.8
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
+..|+.+|.+..-..++..+...|. -+|+|++ |-......++.++. |+.+.++........+.++|.||..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 6789999999877677777766552 2466654 33222333444432 5656666555566677889998874
No 357
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=25.42 E-value=1.8e+02 Score=31.48 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=44.8
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEcceeEe
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVL 534 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAdaV~ 534 (658)
.||..|.+..-..+++.|.+. .++|++++..|..-+..++. .-+...+....++-.+.+ ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad----~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAH----RSYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCc----eEEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 378889887665777777764 56899999988876665442 111111111133444444 6899988876654
No 358
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=25.36 E-value=4.9e+02 Score=25.70 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=52.1
Q ss_pred CEEEeeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE-cc----hHHHHHhh-------h
Q 006152 456 DVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH-------E 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~~M~-------~ 522 (658)
.+||..|.+..|...|. ...++| .+|+++..++ ....++..+|...+.++.++ +| ..+..++. .
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGE-AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 35777776655444333 333444 3788776553 23344445565555444433 22 22323332 4
Q ss_pred ccEEEEcceeEecCCCe-------------ecccchHHHHHHH----hhCCCCeEeec
Q 006152 523 VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVCC 563 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~V-------------vNKiGT~~lAl~A----k~~~VPVyV~a 563 (658)
+|.||..|-.. ..+.. .|-.|+..+.-.+ +..++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67777766322 11111 3667777666555 44565555443
No 359
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.35 E-value=3e+02 Score=27.51 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=43.5
Q ss_pred EEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCCeE
Q 006152 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVL 560 (658)
Q Consensus 482 ~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKi-GT~~lAl~Ak~~~VPVy 560 (658)
+|.|++--=.+- ..+++.|.+.|+++.++.+. .-+.++|.++++--... +.....+ +....---+.+.++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 445554332222 45667888888888877542 23457888877541100 0111111 11122223445689999
Q ss_pred eecccccccc
Q 006152 561 VCCEAYKFHE 570 (658)
Q Consensus 561 V~aetyKf~~ 570 (658)
-+|--+-+--
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 8887665443
No 360
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=25.34 E-value=8.3e+02 Score=25.84 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 104 ~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 104 ELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 4456678999999999999998888888889999853
No 361
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=25.24 E-value=7.8e+02 Score=25.52 Aligned_cols=46 Identities=13% Similarity=-0.001 Sum_probs=26.6
Q ss_pred HHhhhccEEEEcceeEecCCC-----eecccchHHHHHHHhhCCCC-eEeec
Q 006152 518 YIIHEVTRVFLGASSVLSNGT-----VCSRVGTACVAMVAYGFHIP-VLVCC 563 (658)
Q Consensus 518 ~~M~~Vd~VlvGAdaV~aNG~-----VvNKiGT~~lAl~Ak~~~VP-VyV~a 563 (658)
.+...+|.||--|-.+-.++. -.|-.||..+.-+|...++. |+.+.
T Consensus 84 ~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iS 135 (367)
T TIGR01746 84 RLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVS 135 (367)
T ss_pred HHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEc
Confidence 344567776654433221111 14667888888888888766 55443
No 362
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=25.21 E-value=4.8e+02 Score=28.18 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=63.2
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCc--------------hHH----HHHHHHHhC-
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EGK----LLLRRLVRK- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~--------------EG~----~La~eL~~~- 504 (658)
++..+.+++. ...||..|.+.+=..+++.....|.+ ++.++|..+.- -|+ .++..|.+.
T Consensus 9 ~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 4555666665 46777788776544556666666764 44444443310 122 122556554
Q ss_pred -CCcEEEEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 505 -GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 -GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++++.+...-....+.+.|.||...|.+.. -..+.-+|+.++|||+.+.
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 4667666654334566789988776553211 1234457889999998853
No 363
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.14 E-value=2e+02 Score=28.45 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecCC-CeecccchHHHHHHHhhCCCCeEeecccccc
Q 006152 496 LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG-TVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 496 ~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aNG-~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
.+++.|.+.|++++++.+.. -+.+.|.||++--.....- ......|....-.-+...++|++-+|--+-+
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~ 83 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQL 83 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHH
Confidence 45688888898888887532 2457888877531110000 0011224433333344569999977765433
No 364
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.11 E-value=4.8e+02 Score=28.94 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhh-ccEEEEccee
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGASS 532 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~-Vd~VlvGAda 532 (658)
.|.+|+..|.+..=..+.+.+++.| .+|++.|..+... ...+.+|.+.|+.+..-.+.. .+..+ .|.||..+-
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~g- 77 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNPG- 77 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECCC-
Confidence 3567888887763223334444445 5788888665322 234567888898765433222 22333 677666541
Q ss_pred EecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 533 VLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 533 V~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
|-. +..+-..|++.++||+
T Consensus 78 i~~---------~~~~~~~a~~~~i~v~ 96 (447)
T PRK02472 78 IPY---------TNPMVEKALEKGIPII 96 (447)
T ss_pred CCC---------CCHHHHHHHHCCCcEE
Confidence 221 2345556666666665
No 365
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=25.10 E-value=8.4e+02 Score=26.89 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=50.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHH-HHH-HHHHhCCCcEEEEcch---HHHHHhh-hccEEEEc
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~-~La-~eL~~~GI~vT~I~Ds---Av~~~M~-~Vd~VlvG 529 (658)
..|++-+.+.++..++ .+...| -+|++. .|.+.|. .+. ..+...||+++++... .+...+. ++..|++-
T Consensus 67 ~al~~~SG~~Al~~~l-~~l~pG--d~Vi~~--~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~le 141 (380)
T PRK06176 67 KGFAFASGLAGIHAVF-SLFQSG--DHVLLG--DDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLE 141 (380)
T ss_pred CEEEECCHHHHHHHHH-HHcCCC--CEEEEc--CCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEE
Confidence 3444433344565444 444434 356663 3555443 333 4567789998877432 3333343 45556551
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. ---..|.+.. --.|+-+||+|+++++|
T Consensus 142 s-P~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 142 T-PSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred C-CCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 1 0111232222 33578889999998776
No 366
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=25.09 E-value=3e+02 Score=28.05 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=53.5
Q ss_pred EEeeCChHHHH-HHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh-CCCcEEEE---cchHHHHHhhh--ccEEEEcc
Q 006152 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT---HINAISYIIHE--VTRVFLGA 530 (658)
Q Consensus 458 ILT~g~SsaV~-~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~-~GI~vT~I---~DsAv~~~M~~--Vd~VlvGA 530 (658)
||..|-+..+. .+++++.+.|..++|++++..........+..+.. .++.+... ....+..++.. +|.||--|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 44555443333 33444445565678888763222111111222221 23433221 22455666765 89888766
Q ss_pred eeEecCCC--------eecccchHHHHHHHhhC--CCCeEeecc
Q 006152 531 SSVLSNGT--------VCSRVGTACVAMVAYGF--HIPVLVCCE 564 (658)
Q Consensus 531 daV~aNG~--------VvNKiGT~~lAl~Ak~~--~VPVyV~ae 564 (658)
-....+-. -.|-.|+..++-+|+++ ++.++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 43321111 24667888888888875 456554443
No 367
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=25.05 E-value=6.7e+02 Score=26.74 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-c----hHHHHHhhhccEEE
Q 006152 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~~M~~Vd~Vl 527 (658)
.+.+||..|-+.-|..-| +.+.++| .+|+++.-.+ .....+...+.. +-.++++. | ..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 456788888765544433 3444445 5677664322 223333333332 33454442 2 34555667889888
Q ss_pred EcceeEecCC-----Ce-----ec-----ccchHHHHHHHhhCC-CCeEeeccc
Q 006152 528 LGASSVLSNG-----TV-----CS-----RVGTACVAMVAYGFH-IPVLVCCEA 565 (658)
Q Consensus 528 vGAdaV~aNG-----~V-----vN-----KiGT~~lAl~Ak~~~-VPVyV~aet 565 (658)
--|-..-.+. +. .| -.||..+.-+|+.++ +.-+|...+
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 7764322111 00 12 268888888877664 655555444
No 368
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.89 E-value=1e+03 Score=26.67 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCcEE-EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vT-~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++-+.|.+.||++. .++|..+.. ++.. -|+-.+. ++.+.+.+..-.+-+.||+|++.+.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e-~~~~----~~~~~~~----~~~~~~~~~A~~Le~~~GiP~~~~~ 228 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTE-LPVI----GPGTVVA----PLQPYLSDTATTLRRERGAKVLSAP 228 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcch-hhhc----CCCeEEE----EechHHHHHHHHHHHHhCCccccCC
Confidence 555677889999998 788865432 1111 1222221 4556666655667788999987753
No 369
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=24.84 E-value=8.3e+02 Score=26.33 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=16.6
Q ss_pred EecC-CCeecccc-hHHHHHHHhhCCCCeEe
Q 006152 533 VLSN-GTVCSRVG-TACVAMVAYGFHIPVLV 561 (658)
Q Consensus 533 V~aN-G~VvNKiG-T~~lAl~Ak~~~VPVyV 561 (658)
+..+ |.++..-+ -..|+-+|++|++.+++
T Consensus 200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 200 IQGEGGVIVPPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5544 43333333 45566678888887654
No 370
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=24.82 E-value=6.4e+02 Score=27.19 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=51.3
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-H------HHHHhhhccEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYIIHEVTRVF 527 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-A------v~~~M~~Vd~Vl 527 (658)
+.+|+|.|.+.++..++....+.| -.|+|.+ |.+.+...+ +...|+.+..+... . +..+...++
T Consensus 92 ~~vi~t~G~~~~l~~~~~~~~~~g--d~vlv~~--P~y~~~~~~--~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~--- 162 (383)
T TIGR03540 92 TEVLSLIGSKEGIAHIPLAFVNPG--DIVLVPD--PGYPVYRIG--TLFAGGEPYEMPLKEENGFLPDFDAIPEDIA--- 162 (383)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEeC--CCCcchHHH--HHhcCCEEEEEecCcccCCccCHHHHHhhcc---
Confidence 457888888888866555444434 3455543 666665544 34577777666421 1 112211111
Q ss_pred EcceeEecCCCeecccch-------HHHHHHHhhCCCCeE
Q 006152 528 LGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVL 560 (658)
Q Consensus 528 vGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVy 560 (658)
-....|+-+ .--|..|+ ..|+-+|+.|++.++
T Consensus 163 ~~~~~v~i~-~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 163 KKAKLMFIN-YPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccceEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCEEEE
Confidence 122333333 23477774 455667888887444
No 371
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.77 E-value=1.9e+02 Score=32.09 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHH-cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEE-EEcchHHHHHhhhccEEEEcceeEecCCCeec
Q 006152 464 SSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCS 541 (658)
Q Consensus 464 SsaV~~vL~~A~e-~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT-~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvN 541 (658)
..+++.++....+ ...+.+|.++-.-+...-.++.+.|.+.||++. .++|.....+.+ ... |..++ +++
T Consensus 138 ~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~~~-~~~----a~~~~----~~~ 208 (396)
T cd01979 138 DTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDLPV-IGP----GTYVL----GIQ 208 (396)
T ss_pred HHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHhhc-cCc----ceEEE----EeC
Confidence 3455555544322 122344444433333333566688899999996 778765444322 111 00011 223
Q ss_pred ccchHHHHHHHhhCCCCeEeec
Q 006152 542 RVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 542 KiGT~~lAl~Ak~~~VPVyV~a 563 (658)
..+.+..-.+.++|++|++.+-
T Consensus 209 ~~~~~~A~~Le~r~giP~~~~~ 230 (396)
T cd01979 209 PFLSRTATTLMRRRKCKLLSAP 230 (396)
T ss_pred hhHHHHHHHHHHhcCCCcccCC
Confidence 3445666678899999998753
No 372
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.74 E-value=2.7e+02 Score=30.07 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCC-eeEEE-EeCCCCCchHHHHHHHHHhCCCcEEEEc---------chHHHHHhh--h
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTH---------INAISYIIH--E 522 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk-~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~---------DsAv~~~M~--~ 522 (658)
-.||.-|+++.++.+|. +++.|. ..+|. |+-.+|.. .....+.|||+.++. +..+...++ +
T Consensus 96 iavl~Sg~g~nl~al~~-~~~~~~l~~~i~~visn~~~~-----~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (289)
T PRK13010 96 VVIMVSKFDHCLNDLLY-RWRMGELDMDIVGIISNHPDL-----QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSG 169 (289)
T ss_pred EEEEEeCCCccHHHHHH-HHHCCCCCcEEEEEEECChhH-----HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhC
Confidence 46788899999976554 555554 34443 44556533 244556799999875 223333444 4
Q ss_pred ccEEEE
Q 006152 523 VTRVFL 528 (658)
Q Consensus 523 Vd~Vlv 528 (658)
+|.+++
T Consensus 170 ~Dlivl 175 (289)
T PRK13010 170 AELVVL 175 (289)
T ss_pred CCEEEE
Confidence 777665
No 373
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.67 E-value=1.4e+02 Score=34.34 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+..|+.+|.+..=..+.+.+++.| .+|+|.|.||.-++.... .|...||.+..-.... .....+|.|++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVK 75 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEE
Confidence 788999987643224455555545 789999999988554433 5666666655543222 33334555543
No 374
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.63 E-value=5.3e+02 Score=25.13 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=41.3
Q ss_pred CCEEEeeCChHHHHHH-HHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-c----hHHHHHhh-------
Q 006152 455 GDVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~v-L~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----sAv~~~M~------- 521 (658)
+.+||..|-+..+... .+.+.++| .+|+++-.++...-..+..++...+-.+.++. | ..+..++.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG--ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567777766555433 34445545 46766655554434455566766665555542 2 22223333
Q ss_pred hccEEEEcce
Q 006152 522 EVTRVFLGAS 531 (658)
Q Consensus 522 ~Vd~VlvGAd 531 (658)
.+|.||..|-
T Consensus 83 ~id~vi~~ag 92 (248)
T PRK05557 83 GVDILVNNAG 92 (248)
T ss_pred CCCEEEECCC
Confidence 4788887764
No 375
>PRK09148 aminotransferase; Validated
Probab=24.60 E-value=4.2e+02 Score=29.09 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=55.4
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-------HHHHHhh--
Q 006152 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-- 521 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~~M~-- 521 (658)
+... .+++|.|.+.++..++....+.|. +|++ + .|.+.+..... ...|+.+..+... .+-..++
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~-~-~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILC-P-NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEE-c-CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 3444 789999999888665555444443 4444 3 47777754433 3468888776421 1222232
Q ss_pred --hccEEEEc-ceeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 522 --EVTRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 522 --~Vd~VlvG-AdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
+...|++- .+ -..|.+++.-=-..|+-+|+.|++.++
T Consensus 163 ~~~~~~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 163 IPKPIALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred cccceEEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 33334331 01 122555554444566777888987544
No 376
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=24.50 E-value=4.9e+02 Score=28.33 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=26.7
Q ss_pred eeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE
Q 006152 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (658)
Q Consensus 460 T~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I 511 (658)
+||++..+...|+..++.+....|++ ..-.-.+.++.|.+.|+++..+
T Consensus 115 ~~G~~~~~~~~i~~ik~~~p~v~Vi~----G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 115 AHGHSVYVIEMIKFIKKKYPNVDVIA----GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEE----CCCCCHHHHHHHHhcCCCEEEE
Confidence 45666655566777766554455554 1112234566777777655444
No 377
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=24.39 E-value=2.3e+02 Score=30.13 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=53.1
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHH---HHHhhhccEEEEc
Q 006152 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLG 529 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv---~~~M~~Vd~VlvG 529 (658)
....+|+|.|.+.++..++. +...| .|++. .|.+.+...+ +...|+.+..++.... -..+++ ..
T Consensus 56 ~~~~I~it~Gs~~~l~~~~~-~~~~~---~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~-----~~ 122 (332)
T PRK06425 56 LKIKVLIGPGLTHFIYRLLS-YINVG---NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNN-----YN 122 (332)
T ss_pred CcceEEECCCHHHHHHHHHH-HhCCC---cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhh-----cC
Confidence 34457888888888865553 44322 56666 4887665443 3446888877753211 112221 13
Q ss_pred ceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 530 ASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 530 AdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++.|+-+ .--|.+|+ ..++-.|++|++.+++
T Consensus 123 ~k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 123 FDLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred CCEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3333333 34566666 5566678888886654
No 378
>PRK07877 hypothetical protein; Provisional
Probab=24.37 E-value=6.2e+02 Score=30.98 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHH-HHHHHHcCC--eeEEE---EeC-C---CC----CchHH--
Q 006152 432 FINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMI-LQHAHELGK--QFRVV---IVD-S---RP----KHEGK-- 495 (658)
Q Consensus 432 fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~v-L~~A~e~gk--~f~Vi---V~E-S---RP----~~EG~-- 495 (658)
|..++.......|++.+.+++++ ..|+..|.| |... +..+...|. +++++ ++| | |- ..-|+
T Consensus 85 ~~~~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G--lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~K 161 (722)
T PRK07877 85 FRAVRLDRNRNKITAEEQERLGR-LRIGVVGLS--VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNK 161 (722)
T ss_pred hhHHHhhchhhhCCHHHHHHHhc-CCEEEEEec--HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHH
Confidence 33333333334577788888864 677777775 3332 333444563 34433 122 1 21 11121
Q ss_pred -H-HHHHHHh--CCCcEEEEcc----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 496 -L-LLRRLVR--KGLSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 496 -~-La~eL~~--~GI~vT~I~D----sAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
. +++.|.+ -.|+++.+.. ..+-.++..+|.||=++|.+- .=+.+--.|+.++||++-.+.
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~---------~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLD---------VKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEcC
Confidence 1 2245554 3577766654 346667788999999998642 234666789999999998875
No 379
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=24.26 E-value=86 Score=33.01 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=58.5
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh--hccEEEEccee--
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASS-- 532 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~--~Vd~VlvGAda-- 532 (658)
+||..|.+..|...|..+.++ +.+.|+.+ +|....-. ....+..++. +.|.||-=|--
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl~----------------d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDLT----------------DPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-TT----------------SHHHHHHHHHHH--SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCCC----------------CHHHHHHHHHHhCCCeEeccceeec
Confidence 689999888888888777654 56788887 55532111 1122233333 23444433210
Q ss_pred ---EecC---CCeecccchHHHHHHHhhCCCCeEeeccccccccc
Q 006152 533 ---VLSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (658)
Q Consensus 533 ---V~aN---G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~ 571 (658)
.-.| -.-+|-.|+..+|-+|+.++++++-+.-.+=|+..
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 0001 23477899999999999999999999988888765
No 380
>PRK12743 oxidoreductase; Provisional
Probab=24.25 E-value=3.1e+02 Score=27.59 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCEEEeeCChHHHHHHHH-HHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEE-cc----hHHHHHhh-------
Q 006152 455 GDVLLTYGSSSAVEMILQ-HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~-~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I-~D----sAv~~~M~------- 521 (658)
+.+||..|.|+-|...+. .+.++| .+|+++..|......++..+|...|-.+.++ +| ..+-.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777877766554443 344444 5888887777666777778888777666554 23 23333333
Q ss_pred hccEEEEcc
Q 006152 522 EVTRVFLGA 530 (658)
Q Consensus 522 ~Vd~VlvGA 530 (658)
.+|.||..|
T Consensus 80 ~id~li~~a 88 (256)
T PRK12743 80 RIDVLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 468777765
No 381
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.11 E-value=8.1e+02 Score=26.98 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC--------CCC-----chHH----HHHHHHHhC--
Q 006152 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--------RPK-----HEGK----LLLRRLVRK-- 504 (658)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES--------RP~-----~EG~----~La~eL~~~-- 504 (658)
++..+.+++.+ .+||..|.+.+=..++..+...|..--.+|... |-. .-|+ .++++|.+.
T Consensus 18 ~g~~~q~~L~~-~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 18 IGQQGQQSLFD-AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred cCHHHHHHHhC-CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 56667777754 788888887654445555566675432333221 111 1121 223566654
Q ss_pred CCcEEEEc----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 505 GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 505 GI~vT~I~----DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.+.++.+. ...+..+++.+|.||.+.|.+ .--+.+.-+|+.++|||+.++
T Consensus 97 ~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEE
Confidence 45555442 223345678999999988754 233567889999999988653
No 382
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.08 E-value=1.8e+02 Score=31.82 Aligned_cols=176 Identities=15% Similarity=0.086 Sum_probs=90.8
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 006152 345 CGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISL-SESEAKA 423 (658)
Q Consensus 345 ~Gs~araiaml~A~k~vI~dy~~p~~~~~~r~L~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~-~~~eaKe 423 (658)
+|....++||+.+.+-.---...|. ..+.+-...|+.+...|..+....-+|..+++++++..++.+... -..+...
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP~--~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~N 147 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMPE--TMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFEN 147 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCC
Confidence 4555567776666653211111232 355666677777766666555544458889998887777664311 1111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC--CCc---------
Q 006152 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKH--------- 492 (658)
Q Consensus 424 ~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR--P~~--------- 492 (658)
-.--.+. + ......|.+..... -.-.|.-.|-+-++.++-+..+++...++++.+|-. |.+
T Consensus 148 paN~~aH----~--~tT~~EI~~~~~g~--~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i 219 (300)
T COG0031 148 PANPEAH----Y--ETTGPEIWQQTDGK--VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKI 219 (300)
T ss_pred CccHHHH----H--hhhHHHHHHHhCCC--CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCccc
Confidence 0000000 0 01222344333222 123455566666777777788887888999999743 333
Q ss_pred hHH--HHH-HHHHhCCC-cEEEEcchHHHHHhh---hccEEEEcc
Q 006152 493 EGK--LLL-RRLVRKGL-SCTYTHINAISYIIH---EVTRVFLGA 530 (658)
Q Consensus 493 EG~--~La-~eL~~~GI-~vT~I~DsAv~~~M~---~Vd~VlvGA 530 (658)
||. .+. ..|...=| .+..|.|..+...++ +-+-+++|.
T Consensus 220 ~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 220 EGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGI 264 (300)
T ss_pred CCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecc
Confidence 221 112 12222223 255666766666655 457777775
No 383
>PRK09135 pteridine reductase; Provisional
Probab=23.95 E-value=2.1e+02 Score=28.07 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=53.3
Q ss_pred CCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CcEEE-Ec----chHHHHHhh-----
Q 006152 454 DGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTY-TH----INAISYIIH----- 521 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~-I~----DsAv~~~M~----- 521 (658)
.+.+||..|.+.-|..-|.+. .++ ..+|+++..+.......+.+.|...+ -.+.+ .. ...+..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAA--GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788888876665544433 333 46788887655444445555555431 11222 22 234444554
Q ss_pred --hccEEEEcceeEecCCC-----e--------ecccchHHHHHHHh
Q 006152 522 --EVTRVFLGASSVLSNGT-----V--------CSRVGTACVAMVAY 553 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~-----V--------vNKiGT~~lAl~Ak 553 (658)
.+|.||-.|-... .+. . .|-.|++.+.-++.
T Consensus 83 ~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~ 128 (249)
T PRK09135 83 FGRLDALVNNASSFY-PTPLGSITEAQWDDLFASNLKAPFFLSQAAA 128 (249)
T ss_pred cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhchhHHHHHHHHH
Confidence 3687777663221 111 1 57888888877664
No 384
>PRK07049 methionine gamma-lyase; Validated
Probab=23.78 E-value=7.1e+02 Score=28.02 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=34.6
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH--HHHHhCCCcEEEEcc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHI 513 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La--~eL~~~GI~vT~I~D 513 (658)
.+.|+|-|.+.++..+|....+.|. +|++. .|.+.|.... ..|...|+++..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 4677777777777666666655554 45553 4777666543 446778998555543
No 385
>PRK01362 putative translaldolase; Provisional
Probab=23.69 E-value=4.6e+02 Score=27.12 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=38.7
Q ss_pred HHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 467 VEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 467 V~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
.+.++.+|++ .+.++-|=|--|. +|.+.+++|.+.||+|.....-.+...+--.. .||+-|..
T Consensus 63 ~~~m~~~a~~l~~~~~~i~iKIP~T~---~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (214)
T PRK01362 63 AEGMIKEGRELAKIAPNVVVKIPMTP---EGLKAVKALSKEGIKTNVTLIFSANQALLAAK---AGATYVSP 128 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEe
Confidence 4455666654 3444333333333 89888999999999998877655555543221 26666554
No 386
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=23.69 E-value=7.9e+02 Score=25.01 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCcccccHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006152 381 ISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-----PISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (658)
Q Consensus 381 L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~-----~~~~~~~eaKe~L~e~Id~fi~E~i~~a~~~Ia~~a~~~I~dg 455 (658)
+..+++.|--+.| ++.+.|+.|.+.+... ..++...+.-+.|.+.+++++++ +..+...+.. .-...
T Consensus 18 ~s~AA~~L~isqs---avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~~~~il~~-~~~~~~~~~~----~~~~~ 89 (296)
T PRK11242 18 FTRAAEALHVSQP---TLSQQIRQLEESLGVQLFDRSGRTVRLTDAGEVYLRYARRALQD-LEAGRRAIHD----VADLS 89 (296)
T ss_pred HHHHHHHcCCCch---HHHHHHHHHHHHhCCeeEeEcCCceeechhHHHHHHHHHHHHHH-HHHHHHHHHH----hcCCC
Confidence 7778888888888 7899999998876431 11233345555667777766654 3333332221 11111
Q ss_pred CEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 456 DVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 456 dvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
..-+++|. +..+..+|...+++....++.+.+... ..+...|.+.++++-++...- .........++-
T Consensus 90 ~~~i~I~~~~~~~~~~l~~~l~~~~~~~p~~~i~~~~~~~----~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~ 162 (296)
T PRK11242 90 RGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIREMSQ----ERIEALLADDELDVGIAFAPV---HSPEIEAQPLFT 162 (296)
T ss_pred eeEEEEEeccchhhhhhHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHCCCCcEEEEecCC---CCcceeEEEeee
Confidence 12233332 234567777777766677766655432 345567777778777653211 122344555555
Q ss_pred eeE
Q 006152 531 SSV 533 (658)
Q Consensus 531 daV 533 (658)
|.+
T Consensus 163 ~~~ 165 (296)
T PRK11242 163 ETL 165 (296)
T ss_pred ccE
Confidence 444
No 387
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.67 E-value=4.5e+02 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCEEEeeCChHHHHH-HHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~-vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
.|..||..|.+..+.. +...+.++|. +|+++..+. ..+...|+++|.||...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 5778888888876544 3344444443 566666431 23456788999998754
No 388
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.66 E-value=7.4e+02 Score=24.72 Aligned_cols=36 Identities=6% Similarity=-0.179 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
+-..+++.+.+.|+++..|+-+.-+.+-+.+|.+|.
T Consensus 126 ~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~ 161 (192)
T PRK00414 126 NIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIR 161 (192)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 334556778888999999887666666667888874
No 389
>PRK14362 Maf-like protein; Provisional
Probab=23.59 E-value=4.4e+02 Score=27.10 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=47.1
Q ss_pred cCCeeEEE---EeC-C-CCCchHHHHHHHHHhCCCcEEEEcchHHHHHhh-hccEEEEcceeEe-cCCCeecccchHHHH
Q 006152 477 LGKQFRVV---IVD-S-RPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-EVTRVFLGASSVL-SNGTVCSRVGTACVA 549 (658)
Q Consensus 477 ~gk~f~Vi---V~E-S-RP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~-~Vd~VlvGAdaV~-aNG~VvNKiGT~~lA 549 (658)
.|-.|.|+ +.| + .+...-..++.+|+..+- - .+.. .-+.+|||||.|. -||.++.|=.+..-|
T Consensus 30 ~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA---------~-~v~~~~~~~~VI~ADTvV~~~g~ilgKP~~~eeA 99 (207)
T PRK14362 30 MGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKA---------R-AVAADHAGRLVIAADTVVALDGMILGKPADRADA 99 (207)
T ss_pred CCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHH---------H-HHHHhCCCCEEEEeCeEEEeCCEEcCCCCCHHHH
Confidence 48889988 445 3 222224566666665331 1 1111 2367999999965 899999999998766
Q ss_pred --HHHhhCCCCeEe
Q 006152 550 --MVAYGFHIPVLV 561 (658)
Q Consensus 550 --l~Ak~~~VPVyV 561 (658)
|+-+..|....|
T Consensus 100 ~~~L~~lsG~~H~V 113 (207)
T PRK14362 100 LSMLRRLAGRTHEV 113 (207)
T ss_pred HHHHHHhCCCceEE
Confidence 455555655444
No 390
>PRK06290 aspartate aminotransferase; Provisional
Probab=23.55 E-value=6e+02 Score=28.22 Aligned_cols=93 Identities=17% Similarity=0.068 Sum_probs=49.7
Q ss_pred ccCC-CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcch-------HHHHHhh--
Q 006152 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-- 521 (658)
Q Consensus 452 I~dg-dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~Ds-------Av~~~M~-- 521 (658)
+... ++++|.|...++..++......| -.|++.+ |.+.+.... +...|.++..+... .+-.+..
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~ 176 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPG--DVTLMTV--PGYPVTGTH--TKYYGGEVYNLPLLEENNFLPDLDSIPKDI 176 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCC--CEEEEeC--CCCccHHHH--HHHcCCEEEEEecCCCcCCcCCHHHHHHhh
Confidence 4444 68999998888855554433333 2444433 776664433 33467776666421 1111111
Q ss_pred --hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCC
Q 006152 522 --EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIP 558 (658)
Q Consensus 522 --~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VP 558 (658)
++..|++ | .--|.+|+ ..|+-+|++|++.
T Consensus 177 ~~~~k~i~l-------~-nP~NPTG~v~s~e~l~~l~~la~~~~~~ 214 (410)
T PRK06290 177 KEKAKLLYL-------N-YPNNPTGAVATKEFYEEVVDFAKENNII 214 (410)
T ss_pred cccceEEEE-------E-CCCCCCCcCCCHHHHHHHHHHHHHcCeE
Confidence 3334433 2 12366665 4566678888873
No 391
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=23.49 E-value=1.6e+02 Score=28.93 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH
Q 006152 439 LADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL 496 (658)
Q Consensus 439 ~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~ 496 (658)
...+.+.+...++-.+|..|.-||-|.--..+|.. ..-+.++-.+|+|..|.-+|+-
T Consensus 52 ~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~-~g~~~~~I~~vvD~np~K~G~~ 108 (160)
T PF08484_consen 52 QSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNY-FGLDNDLIDYVVDDNPLKQGKY 108 (160)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHH-HT--TTTS--EEES-GGGTTEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHH-hCCCcceeEEEEeCChhhcCcc
Confidence 34445556666666789999999987543233443 3333455667777789999864
No 392
>PRK07682 hypothetical protein; Validated
Probab=23.49 E-value=7.8e+02 Score=26.46 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (658)
.++++|.|.+.++..++....+.| -+|++. +|.+.+...+ +...|..+..+.
T Consensus 82 ~~i~~t~G~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~ 133 (378)
T PRK07682 82 DEIIVTVGASQALDVAMRAIINPG--DEVLIV--EPSFVSYAPL--VTLAGGVPVPVA 133 (378)
T ss_pred CcEEEeCChHHHHHHHHHHhCCCC--CEEEEe--CCCchhhHHH--HHHcCCEEEEee
Confidence 468999988888866655554333 345543 4665544333 233466555553
No 393
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=23.46 E-value=5.1e+02 Score=28.33 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=49.7
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc----------hHHHHHhh-h
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D----------sAv~~~M~-~ 522 (658)
..++|+|.|.+.++..++....+.|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+. +
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 34677888877777555544433343 45443 366654433 23456777766532 11111111 3
Q ss_pred ccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCCeEe
Q 006152 523 VTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG~VvNKiGT~-------~lAl~Ak~~~VPVyV 561 (658)
..+|++ .|- -|..|+. .|+-+|+++++++++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344433 222 3667754 355678888987765
No 394
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=23.45 E-value=7.1e+02 Score=24.97 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCc--hHHHHHHHHHhCCCcEEEEc-chHHHHHhh
Q 006152 469 MILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~--EG~~La~eL~~~GI~vT~I~-DsAv~~~M~ 521 (658)
..|.+..++|++ -|+++-.-|.. -|..+.+.|.+.|+++++|+ .|++.+++.
T Consensus 62 ~~i~~~~~~g~~-V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a 116 (229)
T TIGR01465 62 DIMSDAHREGKL-VVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAA 116 (229)
T ss_pred HHHHHHHHCCCe-EEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHH
Confidence 445444455654 45555788854 45677788999999999998 577766665
No 395
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=23.45 E-value=4.5e+02 Score=25.50 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=42.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCC-cEEEEcchHHHHHhhhccEEEEc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL-SCTYTHINAISYIIHEVTRVFLG 529 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI-~vT~I~DsAv~~~M~~Vd~VlvG 529 (658)
+..+.+||-.|+++-... + .+.+.+...+|+.+|-.|.. .+.+ +.+...|+ .++++...+-..+-...|.|+++
T Consensus 29 ~~~~~~vLDiG~G~G~~~-~-~la~~~~~~~v~~vD~s~~~--~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVS-I-EAALQFPSLQVTAIERNPDA--LRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIG 104 (187)
T ss_pred CCCCCEEEEECCcCCHHH-H-HHHHHCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEEC
Confidence 357889999999875422 1 22233556789999977642 3344 33444555 46776654422222356777664
No 396
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=23.15 E-value=3.3e+02 Score=29.77 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=54.0
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC-----------cEEEEcchHH-HHH
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL-----------SCTYTHINAI-SYI 519 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI-----------~vT~I~DsAv-~~~ 519 (658)
+...++++|.|...++.. |..+...|. +|+| ..|.+.+...+.+ ..|+ .++.+....- .+.
T Consensus 93 ~~~d~I~it~Ga~~al~~-l~~l~~~gd--~Vlv--~~P~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 165 (402)
T TIGR03542 93 IDPEEIFISDGAKCDVFR-LQSLFGSDN--TVAV--QDPVYPAYVDSNV--MAGRAGVLDDDGRYSKITYLPCTKENNFI 165 (402)
T ss_pred CCHHHEEECCCcHHHHHH-HHHhcCCCC--EEEE--eCCCCcchHHHHH--HcCCccccccccccceEEEeecchhhCCC
Confidence 555678999999888854 455554443 4444 3566766554433 3455 7776653221 111
Q ss_pred h-----hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 520 I-----HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 520 M-----~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
. .+++.|++- .-=-.-|.++++-=-..++-+|++|++.++
T Consensus 166 ~~~~~~~~~~~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI 210 (402)
T TIGR03542 166 PDLPEEPKIDIIYLC-SPNNPTGTVLTKEQLKELVDYANEHGSLIL 210 (402)
T ss_pred CCccccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 1 234444441 111111444443334567778888988654
No 397
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.15 E-value=3.1e+02 Score=27.48 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=24.5
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeeccc
Q 006152 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 522 ~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
+=|.+|+ |..+|. .--+..++-.||.+|+|++.++..
T Consensus 111 ~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 111 EGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4466654 344453 233556777899999999998764
No 398
>PRK12828 short chain dehydrogenase; Provisional
Probab=23.07 E-value=4.8e+02 Score=25.35 Aligned_cols=109 Identities=13% Similarity=0.001 Sum_probs=55.2
Q ss_pred CCCEEEeeCChHHHHHHH-HHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc---chHHHHHhh-------h
Q 006152 454 DGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIH-------E 522 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL-~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---DsAv~~~M~-------~ 522 (658)
.|.+||..|-+..+...| +.+.++| .+|+++...+.. ..+...+|...++...... ...+..++. .
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G--~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG--ARVALIGRGAAP-LSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC--CeEEEEeCChHh-HHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 367888888876554333 4444444 467877765532 2334455655555433321 233333343 3
Q ss_pred ccEEEEcceeEecCC------------CeecccchHHHHHHHh----hCCCCeEeeccc
Q 006152 523 VTRVFLGASSVLSNG------------TVCSRVGTACVAMVAY----GFHIPVLVCCEA 565 (658)
Q Consensus 523 Vd~VlvGAdaV~aNG------------~VvNKiGT~~lAl~Ak----~~~VPVyV~aet 565 (658)
+|.||-.|-...... --.|-.|++.+.-++. ..++..+|..-+
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA 141 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 677766543221100 1156667776655442 345555555443
No 399
>PRK07505 hypothetical protein; Provisional
Probab=22.97 E-value=9.2e+02 Score=26.34 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=51.3
Q ss_pred CEEEeeCChHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHH-HHHHHhCCCcEEEEcc---hHHHHHhhhccEEEE
Q 006152 456 DVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHI---NAISYIIHEVTRVFL 528 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~L-a~eL~~~GI~vT~I~D---sAv~~~M~~Vd~Vlv 528 (658)
+.+++.+.+.+++.+|.-+.. .+.+..|++.+. .+-|.-. ...+...+.++..+.- ..+...+..-++.++
T Consensus 107 ~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~~~~~~v 184 (402)
T PRK07505 107 SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDALEDICKTNKTVAY 184 (402)
T ss_pred CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhcCCCEEE
Confidence 666666667777777755432 112234555442 1223211 1223334556555542 233444432223333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
=++-+...|.++. --.+.-+|++|++.+++
T Consensus 185 l~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 185 VADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred EEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 3466777777766 35666788999875443
No 400
>PLN02476 O-methyltransferase
Probab=22.96 E-value=8.9e+02 Score=26.09 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=48.1
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HHHHhCCCc--EEEEcchHHHHHh--------h
Q 006152 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLS--CTYTHINAISYII--------H 521 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~eL~~~GI~--vT~I~DsAv~~~M--------~ 521 (658)
....+||=.|.++-.- .|.-|...+..-+|+-+|..|. -.+++ ..+.+.|+. ++++...+.-++= .
T Consensus 117 ~~ak~VLEIGT~tGyS-al~lA~al~~~G~V~TiE~d~e--~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYS-SLAVALVLPESGCLVACERDSN--SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHH-HHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 3467888776553321 1222222233346888998874 45677 567888984 8888877766541 1
Q ss_pred hccEEEEccee
Q 006152 522 EVTRVFLGASS 532 (658)
Q Consensus 522 ~Vd~VlvGAda 532 (658)
..|+||+.|+-
T Consensus 194 ~FD~VFIDa~K 204 (278)
T PLN02476 194 SYDFAFVDADK 204 (278)
T ss_pred CCCEEEECCCH
Confidence 47999998873
No 401
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=22.92 E-value=8.2e+02 Score=24.97 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCcEEEEcchHHHHHhh----hccEEEEcceeEecCCCeecccchH---HHHHHHhhCCCCeEeeccc
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVGTA---CVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsAv~~~M~----~Vd~VlvGAdaV~aNG~VvNKiGT~---~lAl~Ak~~~VPVyV~aet 565 (658)
+|.+..++|.+.||+|...+.-.+..++- .++.|=.-..++-..|. -|.. .+.-+++.++.+.=|++.+
T Consensus 89 ~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~----dg~~~i~~i~~~~~~~~~~tkil~As 164 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGG----DGMELIREIRTIFDNYGFDTKILAAS 164 (211)
T ss_pred hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCC----CHHHHHHHHHHHHHHcCCCceEEecc
Confidence 89999999999999887665433333332 33333333333333321 1222 3334556677777777666
Q ss_pred cc
Q 006152 566 YK 567 (658)
Q Consensus 566 yK 567 (658)
++
T Consensus 165 ~r 166 (211)
T cd00956 165 IR 166 (211)
T ss_pred cC
Confidence 53
No 402
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.87 E-value=1.7e+02 Score=30.71 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhCCCcEEEEcchH-HHHH---hhhccEEEEcceeE
Q 006152 493 EGKLLLRRLVRKGLSCTYTHINA-ISYI---IHEVTRVFLGASSV 533 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~DsA-v~~~---M~~Vd~VlvGAdaV 533 (658)
.|+.+++.|.+.|+++.+|.... .... +.+.|+||.-++..
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~ 64 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGT 64 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCC
Confidence 34555556666666655553221 1111 23578887776654
No 403
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.84 E-value=4.8e+02 Score=29.72 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=40.7
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
+..|+.+|.+..=..+.+.+++.| ++|++.|.++..+. ...|.+.|+.+.+....-....+...|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~---~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPN---LAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchh---HHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 556788876543223445555556 57899998875432 345777765544433211123345788887753
No 404
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=22.82 E-value=7.7e+02 Score=27.05 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=48.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHH-HH-HHhCCCcEEEEcc-hHHHHHhh-hccEEEEcce
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHI-NAISYIIH-EVTRVFLGAS 531 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La-~e-L~~~GI~vT~I~D-sAv~~~M~-~Vd~VlvGAd 531 (658)
.+|+|-|...++..++ .+.+.|. +|++. ++.+.|.... .. +...++.+++..| ..+...+. +...|++..
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~les- 144 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIET- 144 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEEC-
Confidence 4455555556665555 4554443 56664 4555444322 22 2333677666654 23333342 444443321
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 532 aV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
-.-..|.+. ---.++-+||.++++|+|
T Consensus 145 P~NPtg~~~---di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 145 PTNPLMVEF---DIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred CCCCCCeee---CHHHHHHHHHHcCCEEEE
Confidence 111123222 334566778999998887
No 405
>PRK07337 aminotransferase; Validated
Probab=22.80 E-value=7.1e+02 Score=26.92 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=51.3
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH-------HHHHhh---
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH--- 521 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA-------v~~~M~--- 521 (658)
+...++++|-|.+.++..++....+.| -+|++. .|.+.+.... +...|..+..+.... +..+.+
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (388)
T PRK07337 88 VAPERIVVTAGASAALLLACLALVERG--DEVLMP--DPSYPCNRHF--VAAAEGRPVLVPSGPAERFQLTAADVEAAWG 161 (388)
T ss_pred CChHhEEEecCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHcCCEEEEeecCCccCCcCCHHHHHhhcC
Confidence 344578888888887755554443333 345544 4666654433 234576666664321 122222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCCeEe
Q 006152 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (658)
Q Consensus 522 -~Vd~VlvGAdaV~aNG~VvNKiGT-------~~lAl~Ak~~~VPVyV 561 (658)
++..|++ .|- -|..|+ ..++-+|++|++.+++
T Consensus 162 ~~~~~v~l------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 201 (388)
T PRK07337 162 ERTRGVLL------ASP--SNPTGTSIAPDELRRIVEAVRARGGFTIV 201 (388)
T ss_pred ccceEEEE------ECC--CCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 2333332 232 367776 5567778888875553
No 406
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.75 E-value=7.5e+02 Score=24.44 Aligned_cols=34 Identities=6% Similarity=-0.046 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE
Q 006152 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (658)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vlv 528 (658)
.+.++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 3445777788888888888777777777777765
No 407
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.61 E-value=1.4e+02 Score=31.58 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=36.9
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (658)
+..|++|.+.+.+..-..+=..|+..|.+++|++.++-|.. ....+...|-.++++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECC
Confidence 34567777777666544444556667888888887776522 24456677777776654
No 408
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=22.60 E-value=8.4e+02 Score=25.88 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=55.0
Q ss_pred CCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
..+++|.|...++..++ .+ ..| -+|++ + .|.+.+... .+...|+++..+....+...+.+.++|++--=. -
T Consensus 65 ~~I~it~Gs~~al~~~~-~~-~~g--d~v~v-~-~P~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~-N 135 (330)
T PRK05664 65 PQLLPVAGSQAAIQALP-RL-RAP--GRVGV-L-SPCYAEHAH--AWRRAGHQVRELDEAEVEAALDSLDVLVVVNPN-N 135 (330)
T ss_pred CCEEECcCHHHHHHHHH-Hc-cCC--CEEEE-c-CCChHHHHH--HHHHcCCeEEEechhhHhhhhcCCCEEEEeCCc-C
Confidence 47888988888875433 22 223 34444 3 377766543 344568888888765666556555544332110 1
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
..|.+++.-==..++-.|+.+++ ++|+=|.|
T Consensus 136 PTG~~~s~~~l~~l~~~~~~~~~-~iI~DE~y 166 (330)
T PRK05664 136 PTGRRFDPARLLAWHARLAARGG-WLVVDEAF 166 (330)
T ss_pred CCCCccCHHHHHHHHHHHHhcCC-EEEEECCc
Confidence 22333333333345555677787 44444544
No 409
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=22.55 E-value=5.5e+02 Score=27.96 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=33.9
Q ss_pred HHHHhCCCcEEEEcch--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006152 499 RRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (658)
Q Consensus 499 ~eL~~~GI~vT~I~Ds--------Av~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~ 555 (658)
+.|.+.||++++|... .+-..+++...|| +++++....-.|.....+++.+.
T Consensus 221 ~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~ 280 (327)
T PRK09212 221 ELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEA 280 (327)
T ss_pred HHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhC
Confidence 3455556655555322 3455566777776 56777777778888888888774
No 410
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=22.47 E-value=3.6e+02 Score=28.33 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=49.9
Q ss_pred EeeCChHHHHHHHHHHH-HcCCe-eE--EEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 459 LTYGSSSAVEMILQHAH-ELGKQ-FR--VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 459 LT~g~SsaV~~vL~~A~-e~gk~-f~--ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
+++-|+..+...++++. +.|-+ ++ ||+.-+-|.+|-..=.+.|.+ +|||+|=
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 45566666656565554 33433 32 888888898876543333332 3666664
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
.-|...|.+|+++++||.+++--.
T Consensus 183 --------Ms~~pEa~~A~~~gi~~~~i~~Vt 206 (245)
T PRK09136 183 --------MTGMPEAALARELGLPYACLALVA 206 (245)
T ss_pred --------CcHHHHHHHHHHcCCCEEEEEEEe
Confidence 346788999999999999987643
No 411
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=22.31 E-value=9.4e+02 Score=28.52 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=79.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCEEEeeCChHHHHHHHHH----HHHcC-CeeEEEEe-CCCCC------
Q 006152 425 LHSDIERFI-NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH----AHELG-KQFRVVIV-DSRPK------ 491 (658)
Q Consensus 425 L~e~Id~fi-~E~i~~a~~~Ia~~a~~~I~dgdvILT~g~SsaV~~vL~~----A~e~g-k~f~ViV~-ESRP~------ 491 (658)
-++.+..|. ..++. ..+.|+......|++||+|..=|+-.-.-.+|-+ .-.++ +.++++.. -++|.
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~ 89 (543)
T TIGR01110 11 RLNAANELFSDGKVV-PTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFE 89 (543)
T ss_pred HHHHHHhhhcCCcEe-eHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHh
Confidence 344455454 33332 3345777888899999999888875444344433 22233 34666654 34442
Q ss_pred -------------chHHHHHHHHHhCCCcEEEEcc----hHHHHHhh--hccEEEEcceeEecCCCeecccch-----HH
Q 006152 492 -------------HEGKLLLRRLVRKGLSCTYTHI----NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGT-----AC 547 (658)
Q Consensus 492 -------------~EG~~La~eL~~~GI~vT~I~D----sAv~~~M~--~Vd~VlvGAdaV~aNG~VvNKiGT-----~~ 547 (658)
.|+.+++ .+.+.| .+.|++. +.++.++. .+|.+|+=+...-.+|.+. .|+ ..
T Consensus 90 ~G~a~kl~fs~~g~~~~R~~-~av~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s--lG~s~~~~~a 165 (543)
T TIGR01110 90 KGIARKLDFSFAGPQSLRIA-QLLEDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY--TGPNTEDTPA 165 (543)
T ss_pred cCceeeEEEeecCcchHHHH-HHHHcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE--ecCcccchHH
Confidence 2334443 455566 3555543 33444442 6899999999999999994 465 45
Q ss_pred HHHHHhhCCCCeEeeccc
Q 006152 548 VAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 548 lAl~Ak~~~VPVyV~aet 565 (658)
++..|+..+--|+|-++.
T Consensus 166 aaeAAk~~agiVIVEVNe 183 (543)
T TIGR01110 166 IVEATAFRDGIVIAQVNE 183 (543)
T ss_pred HHHhhhhcCCEEEEEECc
Confidence 666777555555554443
No 412
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=22.25 E-value=2.9e+02 Score=25.71 Aligned_cols=47 Identities=11% Similarity=0.294 Sum_probs=25.5
Q ss_pred EEeeCChHHHHHHHHHHHHcC---CeeEEEEeCCCCCchHHHHHHHHHhC
Q 006152 458 LLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRK 504 (658)
Q Consensus 458 ILT~g~SsaV~~vL~~A~e~g---k~f~ViV~ESRP~~EG~~La~eL~~~ 504 (658)
|.||.....+..+|.+..++. ..++|+|++.........+++++...
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~ 52 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR 52 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh
Confidence 455555555666666665542 46677766654444444555444433
No 413
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.22 E-value=3.3e+02 Score=26.42 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=49.4
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV 533 (658)
.|..||..|.+.+-...++...+.|..++|| + |.. ..+|.+.+ .++++...--..-+...|.||...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-Ccc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999988666666666677766666 2 332 22222222 12232221111123455666554322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 534 ~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
+-+| ..++..|+.+ ++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2233 5677788874 6877654
No 414
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.98 E-value=1.3e+02 Score=29.89 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEecC-CCeecccchHHHHHHHhhCCCCeEeecccccc
Q 006152 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (658)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~aN-G~VvNKiGT~~lAl~Ak~~~VPVyV~aetyKf 568 (658)
..+++.|...|++++++.+.. -+.++|.+|++--.-... -......|-...-.-+...++||+-+|--+-+
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~~---~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Ql 84 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDPE---EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQL 84 (199)
T ss_pred HHHHHHHHHCCCcEEEEcChH---HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHH
Confidence 455688888999998885522 245788887743100000 00012234333333334679999987775544
No 415
>PLN02735 carbamoyl-phosphate synthase
Probab=21.90 E-value=4.7e+02 Score=33.45 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHHhCCCcEEEEc------chHHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 497 LLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 497 La~eL~~~GI~vT~I~------DsAv~~~M~-~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.++.|.+.||+|+.+. .+.+-.+.. ++|+||-- .+|.-.-..-.|.+=-+|-.++||++-...
T Consensus 1007 Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~~~ 1076 (1102)
T PLN02735 1007 TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVIT-----SSGDALDQKDGRQLRRMALAYKVPIITTVA 1076 (1102)
T ss_pred HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEEC-----CCCccccccccHHHHHHHHHcCCCEEecHH
Confidence 4567888999988763 233334433 79999743 244432234568888999999999985443
No 416
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.89 E-value=5.4e+02 Score=28.74 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=50.7
Q ss_pred cCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHh--CCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 453 ~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~--~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
+...+|+.+|.+..=..+.+.+++.| ++|++.|.++.. .+..+|.+ .||.+.+-... . ..+.++|.||+..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD-C-ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEECC
Confidence 44567788877643113344455545 689999987643 23345766 37776653212 1 2346788887765
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 531 daV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
+|-.+ ...-..|++.++|++
T Consensus 77 -~i~~~---------~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 77 -GLALD---------TPALRAAAAMGIEVI 96 (448)
T ss_pred -CCCCC---------CHHHHHHHHCCCcEE
Confidence 44322 234445566666665
No 417
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=21.89 E-value=2.7e+02 Score=28.59 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCeeEEEEe--CCCCC--chHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe-cCCCeeccc
Q 006152 469 MILQHAHELGKQFRVVIV--DSRPK--HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL-SNGTVCSRV 543 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~--ESRP~--~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~-aNG~VvNKi 543 (658)
.+|..+ |..|.|++. |..+. ..-.+++.+|+..+- .+++...+ -|.+|||||.|+ -||-++.|-
T Consensus 16 elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ldgrilgKP 84 (193)
T COG0424 16 ELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLDGRILGKP 84 (193)
T ss_pred HHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEECCEEecCC
Confidence 444444 889999974 33332 224677777765431 01222111 589999999875 588999999
Q ss_pred chHHHHH
Q 006152 544 GTACVAM 550 (658)
Q Consensus 544 GT~~lAl 550 (658)
.+..-|.
T Consensus 85 ~~~~eA~ 91 (193)
T COG0424 85 KDEEEAR 91 (193)
T ss_pred CCHHHHH
Confidence 9987764
No 418
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=21.81 E-value=7.9e+02 Score=26.72 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHhccCCCEEEeeCChHHHHHHHHHHHH--cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchH-------
Q 006152 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA------- 515 (658)
Q Consensus 445 a~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e--~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsA------- 515 (658)
+++..+.+++|+ ++-.+|++++..++.+... ..+..+|+=+-+-....... ..+|. .+..+.+++..+
T Consensus 106 A~~L~~~l~~~~-~IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg~~~~~~~-~~~~~-~~~~~~~l~aP~~v~s~e~ 182 (318)
T PRK15418 106 AHMLMSLLQPQQ-LLAVGFGEATMNTLQHLSGFISSQQIRLVTLSGGVGPYMTG-IGQLD-AACSVSIIPAPLRASSAEI 182 (318)
T ss_pred HHHHHHhcCCCC-EEEEcchHHHHHHHHhccccCCCCCCEEEEcCCCCCcchhh-HHHHh-ccCCeEEeccCeecCCHHH
Confidence 344455677877 4677999998887766542 33455666443332211111 22342 344455554333
Q ss_pred ---------H---HHHhhhccEEEEcceeEec
Q 006152 516 ---------I---SYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 516 ---------v---~~~M~~Vd~VlvGAdaV~a 535 (658)
+ ...++++|.+|+|.=.+..
T Consensus 183 ~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~ 214 (318)
T PRK15418 183 ARTLRNENSVRDVMLAAQAADVAIVGIGAVNQ 214 (318)
T ss_pred HHHHHhChHHHHHHHHHHhCCEEEEEecCCCC
Confidence 2 2233489999999877765
No 419
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=21.79 E-value=6.6e+02 Score=26.17 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=36.7
Q ss_pred HHHHHHHHHH----cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 467 VEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 467 V~~vL~~A~e----~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
.+.++.+|++ -+.++-|=|-=| .+|.+..+.|.++||+|..+..-.+..++--+. .||+-|..
T Consensus 66 ~~~mi~eA~~l~~~~~~nv~VKIP~T---~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~---aGa~yvsP 132 (222)
T PRK12656 66 YEGILKDAHEIRRQCGDDVYIKVPVT---PAGLAAIKTLKAEGYHITATAIYTVFQGLLAIE---AGADYLAP 132 (222)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceEEeeeCCHHHHHHHHH---CCCCEEec
Confidence 3455555543 244444444333 359999999999999987776544444432111 55555544
No 420
>PRK14361 Maf-like protein; Provisional
Probab=21.78 E-value=4.6e+02 Score=26.53 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=47.0
Q ss_pred cCCeeEEEE---eCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe-cCCCeecccchHHHH--H
Q 006152 477 LGKQFRVVI---VDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL-SNGTVCSRVGTACVA--M 550 (658)
Q Consensus 477 ~gk~f~ViV---~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~-aNG~VvNKiGT~~lA--l 550 (658)
.|-.|.|+. .|+.+...-..++.+|+..+-. ++.. +.-+.+|+|||.|. -||.++.|-.+..-| |
T Consensus 17 ~g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~-------~v~~--~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA~~~ 87 (187)
T PRK14361 17 LGVPFQVVVSGEAEDSTETDPARLAAELALLKAR-------AVAR--LHPDAVVIAADTVVALGGVLLAKPADEAENEAF 87 (187)
T ss_pred CCCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHH--hCCCCEEEEeCeEEEECCEEecCCCCHHHHHHH
Confidence 488898774 4544332234566666654311 1111 12367999999966 899999999998776 4
Q ss_pred HHhhCCCCeEe
Q 006152 551 VAYGFHIPVLV 561 (658)
Q Consensus 551 ~Ak~~~VPVyV 561 (658)
+-...|....|
T Consensus 88 L~~lsG~~h~V 98 (187)
T PRK14361 88 LRVLSGRTHQV 98 (187)
T ss_pred HHHhCCCceEE
Confidence 55555554443
No 421
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=21.65 E-value=1.7e+02 Score=33.15 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=27.4
Q ss_pred eeEEEEeCCC-----CCchHHHHHHHHHhCCCcEEEE-cchHHHHHhhhcc
Q 006152 480 QFRVVIVDSR-----PKHEGKLLLRRLVRKGLSCTYT-HINAISYIIHEVT 524 (658)
Q Consensus 480 ~f~ViV~ESR-----P~~EG~~La~eL~~~GI~vT~I-~DsAv~~~M~~Vd 524 (658)
.+.|+|+--. -.-...+++..|.+.||.|.+- .+..++.-|+.++
T Consensus 345 P~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~ 395 (439)
T PRK12325 345 PFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMD 395 (439)
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHH
Confidence 3677665331 1123456678899999988764 2345677776544
No 422
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=21.63 E-value=1.6e+02 Score=32.71 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=23.2
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCC
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESR 489 (658)
.+||..|.+..-..+++.|.+.|- +|+++++.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~--~~v~~~~~ 34 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGI--RTVAIYSE 34 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCC--eEEEEech
Confidence 368999999876688888988775 45555443
No 423
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=21.63 E-value=3.8e+02 Score=28.25 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=12.1
Q ss_pred eecccchHHHHHHHhhCCCCeEeec
Q 006152 539 VCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 539 VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++-+.|......+++ -+.+++||.
T Consensus 183 vilk~~~~~~~~l~~-~~~~~~v~e 206 (249)
T TIGR02434 183 VVMLDGEQAFQRVDP-EDIDIYWGA 206 (249)
T ss_pred EEEECCccCHHHhcC-CCCEEEEEE
Confidence 444455553444443 355666664
No 424
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.54 E-value=2.9e+02 Score=28.88 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCCCcEEEEcch-HHHHHh--hhccEEEEcce
Q 006152 493 EGKLLLRRLVRKGLSCTYTHIN-AISYII--HEVTRVFLGAS 531 (658)
Q Consensus 493 EG~~La~eL~~~GI~vT~I~Ds-Av~~~M--~~Vd~VlvGAd 531 (658)
.|..+...|.+.|+.+.+|..+ -+...+ .++|.||...+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 4566677788888887777432 222222 25777777543
No 425
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=21.44 E-value=7.9e+02 Score=27.08 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=33.4
Q ss_pred eeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc
Q 006152 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (658)
Q Consensus 460 T~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~ 512 (658)
.||+|..+...|+...+.-....|++=+.- ..+.++.|.+.|++...+.
T Consensus 117 ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~----t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 117 AHGHSNSVINMIKHIKTHLPDSFVIAGNVG----TPEAVRELENAGADATKVG 165 (321)
T ss_pred ccCchHHHHHHHHHHHHhCCCCEEEEecCC----CHHHHHHHHHcCcCEEEEC
Confidence 478998887888887765555556654332 4566788888887766544
No 426
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=21.43 E-value=1e+02 Score=30.57 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEcchH
Q 006152 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINA 515 (658)
Q Consensus 467 V~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~-vT~I~DsA 515 (658)
...+|..+++ +.+.|+++=+||...-..++..| |++ +-+|+.|.
T Consensus 21 ~~~~l~~l~~--~gi~~~i~TgR~~~~~~~~~~~l---~~~~~~~I~~NG 65 (221)
T TIGR02463 21 AAPWLTRLQE--AGIPVILCTSKTAAEVEYLQKAL---GLTGDPYIAENG 65 (221)
T ss_pred HHHHHHHHHH--CCCeEEEEcCCCHHHHHHHHHHc---CCCCCcEEEeCC
Confidence 3466777765 34678888888887655444444 443 44555444
No 427
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.42 E-value=8.3e+02 Score=24.42 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=25.5
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 520 M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
+..=|.+|+ |...|.. -=+..++-.||+.|+|++.++.
T Consensus 109 ~~~~Dv~i~----iS~sG~t---~~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 109 GQPGDVLLA----ISTSGNS---ANVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCCCEEEE----EeCCCCc---HHHHHHHHHHHHCCCeEEEEEC
Confidence 345566664 4444532 2256678899999999999876
No 428
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=21.38 E-value=2.5e+02 Score=30.40 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.7
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEeecccc
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~aety 566 (658)
+.|.|..|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 677777765 24456788999999999887654
No 429
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=21.36 E-value=3.9e+02 Score=27.93 Aligned_cols=86 Identities=10% Similarity=0.073 Sum_probs=46.1
Q ss_pred EEEeeCC-hHHHHHHHHHHHHcCCeeEEE-EeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEe
Q 006152 457 VLLTYGS-SSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (658)
Q Consensus 457 vILT~g~-SsaV~~vL~~A~e~gk~f~Vi-V~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~ 534 (658)
.|..+|. +..=..+++.+. +...+++. +++..+...... ...|+.+ .. .+..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~-~~~~~elvav~d~~~~~~~~~-----~~~~i~~--~~--dl~~ll~~~DvVid~t---- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVE-AAEDLELVAAVDRPGSPLVGQ-----GALGVAI--TD--DLEAVLADADVLIDFT---- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCCCCEEEEEEecCCcccccc-----CCCCccc--cC--CHHHhccCCCEEEECC----
Confidence 5777886 554323333333 33446544 456555332211 2234422 12 2333455677665332
Q ss_pred cCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 535 SNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 535 aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+.-..+.++..|-++|+||++.
T Consensus 69 ------~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 ------TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred ------CHHHHHHHHHHHHHcCCCEEEE
Confidence 5556688888999999999865
No 430
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.34 E-value=8.3e+02 Score=24.41 Aligned_cols=35 Identities=0% Similarity=-0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcEEEEcc---hHHHHHhhhccEEEEc
Q 006152 495 KLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLG 529 (658)
Q Consensus 495 ~~La~eL~~~GI~vT~I~D---sAv~~~M~~Vd~VlvG 529 (658)
.++++.+.+.|+++..|+. +.++-+...+|.+|.=
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v 165 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV 165 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEe
Confidence 3455777788888888887 4444443457766543
No 431
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=21.31 E-value=54 Score=28.16 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=25.2
Q ss_pred HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeecc
Q 006152 519 IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (658)
Q Consensus 519 ~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ae 564 (658)
.+.++--|+ +..|+.. .-.|++|++++||.+|-|.
T Consensus 27 ~~~~~~Giv------~~~Gg~~-----SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 27 DLQRVAGIV------TEEGGPT-----SHAAILARELGIPAIVGVG 61 (80)
T ss_dssp HHTTSSEEE------ESSSSTT-----SHHHHHHHHTT-EEEESTT
T ss_pred chhheEEEE------EEcCCcc-----chHHHHHHHcCCCEEEeec
Confidence 556677664 4456543 4589999999999999986
No 432
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.25 E-value=1.9e+02 Score=28.24 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=26.5
Q ss_pred HHHHHHHHhccCCCEEEeeC---ChH---HHHHHHHHHHHcCCee
Q 006152 443 VIVKHAVTKIRDGDVLLTYG---SSS---AVEMILQHAHELGKQF 481 (658)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g---~Ss---aV~~vL~~A~e~gk~f 481 (658)
.|.++..+.+++|++||-|. +.. ++..+|..+.++|-+|
T Consensus 140 ~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~ 184 (191)
T TIGR02764 140 SIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEF 184 (191)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEE
Confidence 35555666788999999993 332 4666677777777555
No 433
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.23 E-value=2.6e+02 Score=31.35 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=39.2
Q ss_pred cchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEee
Q 006152 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (658)
Q Consensus 512 ~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~ 562 (658)
+-.++.++|..=+. .-|.++.=|.|..-+|+-.-.-++++|++|++|.
T Consensus 171 ~PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVa 218 (364)
T PRK15062 171 VPPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVA 218 (364)
T ss_pred cHHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEe
Confidence 44677788764332 5577888899999999999999999999999886
No 434
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=21.20 E-value=8.8e+02 Score=26.35 Aligned_cols=72 Identities=7% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhccC-CCEEEe-e-----CChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEE
Q 006152 437 IILADRVIVKHAVTKIRD-GDVLLT-Y-----GSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT 509 (658)
Q Consensus 437 i~~a~~~Ia~~a~~~I~d-gdvILT-~-----g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT 509 (658)
+...|+.+++.-.+++.. |-.++- . |.+++++.++..... ..++.|++....-.+ =+..|...|+++.
T Consensus 84 il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~---~~~~~VI~gD~~t~~--Da~rI~~~g~pvv 158 (290)
T PRK10463 84 VLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD---SVPCAVIEGDQQTVN--DAARIRATGTPAI 158 (290)
T ss_pred HHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc---CCCEEEECCCcCcHH--HHHHHHhcCCcEE
Confidence 344556666655555532 333333 3 335667665555432 235666665443322 1456788898887
Q ss_pred EEcc
Q 006152 510 YTHI 513 (658)
Q Consensus 510 ~I~D 513 (658)
.|.-
T Consensus 159 qi~t 162 (290)
T PRK10463 159 QVNT 162 (290)
T ss_pred EecC
Confidence 7754
No 435
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=20.93 E-value=7.6e+02 Score=27.50 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=59.3
Q ss_pred HHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc-c----------hHHH
Q 006152 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----------NAIS 517 (658)
Q Consensus 449 ~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~-D----------sAv~ 517 (658)
.+...+.++|+|-|-+.++..++....+.|.. |+|.+ |.+.....+-.| .|..+..+. + ..+-
T Consensus 84 ~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDe--Vlip~--P~Y~~y~~~~~~--~gg~~v~v~l~~~~~~f~~d~~~l~ 157 (393)
T COG0436 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDE--VLIPD--PGYPSYEAAVKL--AGGKPVPVPLDEEENGFKPDLEDLE 157 (393)
T ss_pred CCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCE--EEEeC--CCCcCHHHHHHh--cCCEEEEEeCCcCccCCcCCHHHHH
Confidence 44555667999999999886666666655654 66654 777665544343 343333332 1 2333
Q ss_pred HHhhh-ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeE
Q 006152 518 YIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (658)
Q Consensus 518 ~~M~~-Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVy 560 (658)
..+.. +..++| ..==-.-|.++.+-=--.++=+|++|++=++
T Consensus 158 ~~i~~ktk~i~l-n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii 200 (393)
T COG0436 158 AAITPKTKAIIL-NSPNNPTGAVYSKEELKAIVELAREHDIIII 200 (393)
T ss_pred hhcCccceEEEE-eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 33333 333332 1111122555555555778889999887443
No 436
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=20.83 E-value=1.2e+03 Score=26.13 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCEEEeeCChHHHHHHHHHHH-HcCCeeEEEEeCCC-CCchHHHHHHHHHhCCCcEEE--Ecch-HHHHHhhhccEEEE-
Q 006152 455 GDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSR-PKHEGKLLLRRLVRKGLSCTY--THIN-AISYIIHEVTRVFL- 528 (658)
Q Consensus 455 gdvILT~g~SsaV~~vL~~A~-e~gk~f~ViV~ESR-P~~EG~~La~eL~~~GI~vT~--I~Ds-Av~~~M~~Vd~Vlv- 528 (658)
|.++..++-+..+..+-+-+. +.|....++++... |......+..+|.+.|+...+ +.|. .+.-.+++.+ +-
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~elGm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~--~~~ 370 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNELGWVPAKQVITDNPPEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSD--FKY 370 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCC--CCC
Confidence 577888888877666656564 67888777765544 444444444556556664433 3442 3333333322 00
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 529 GAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
++|-|+ |+..---+|++.++|++.++
T Consensus 371 ~~dlii---------g~s~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 371 KPPIIF---------GSSWERDLAKELGGKILEVS 396 (427)
T ss_pred CCCEEE---------echHHHHHHHHcCCCeEEEe
Confidence 123333 23334457889999999654
No 437
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.83 E-value=1.6e+02 Score=29.53 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=40.9
Q ss_pred HHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCC
Q 006152 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (658)
Q Consensus 449 ~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI 506 (658)
.+.|++-|.|+-|+.+-....+| +.||.+-|++-|+-=.+.-.+||..|.+.|.
T Consensus 75 ~e~I~~AdlVIsHAGaGS~letL----~l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 75 TEDIRSADLVISHAGAGSCLETL----RLGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHHhhccEEEecCCcchHHHHH----HcCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 34566777788886544332444 3589999999999888888899999999995
No 438
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=20.81 E-value=1.2e+03 Score=27.94 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHH-hCCCcEEEEcchHH--HHHhhhccEEEE
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHINAI--SYIIHEVTRVFL 528 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~-~~GI~vT~I~DsAv--~~~M~~Vd~Vlv 528 (658)
.+...|+|++.+.|...|..-.+..+-=.+-+.-|-|-.+-..|..... +..+.|-++...|. |.-+.-.+.|+.
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 3578999999998877787766555555788888888887777775554 34566666655444 444444555443
No 439
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.78 E-value=4.5e+02 Score=26.97 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=48.4
Q ss_pred EeCCCCCchHHHHHHHHHhCCCcEEEEc---chHHHHH---hhhccEEEEcceeEecC-----------CCeecccchHH
Q 006152 485 IVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYI---IHEVTRVFLGASSVLSN-----------GTVCSRVGTAC 547 (658)
Q Consensus 485 V~ESRP~~EG~~La~eL~~~GI~vT~I~---DsAv~~~---M~~Vd~VlvGAdaV~aN-----------G~VvNKiGT~~ 547 (658)
|+-..+..+...+++.|.+.||++.-|+ ..+.-.+ -++.+.++|||-.|+.- .-+++..-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 4455566778888999999998765554 3333322 23566799999777632 12445555555
Q ss_pred HHHHHhhCCCCeE
Q 006152 548 VAMVAYGFHIPVL 560 (658)
Q Consensus 548 lAl~Ak~~~VPVy 560 (658)
+.-.|+++++|++
T Consensus 89 vi~~a~~~~i~~i 101 (201)
T PRK06015 89 LLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHcCCCEe
Confidence 6666667777766
No 440
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=20.78 E-value=4e+02 Score=24.62 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcc
Q 006152 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (658)
Q Consensus 454 dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGA 530 (658)
++.+|+..|.+..=..+.+...+.| ..+|++.+..+. ....++.++...++.+.+... ..++.++|.||...
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYLDL---EELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeecch---hhccccCCEEEeCc
Confidence 4677888888754434444444444 356777765432 234455555543333333221 22256777777643
No 441
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.74 E-value=5.8e+02 Score=28.56 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=52.8
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
..|+.+|-+..=...+..+...+..+.|.+.|.++..+ +...|.+ ||.+.+-... .. .+.++|.||+..
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~---~~~~l~~-g~~~~~g~~~-~~-~~~~~d~vV~Sp----- 76 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP---GQEQLPE-DVELHSGGWN-LE-WLLEADLVVTNP----- 76 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch---hHHHhhc-CCEEEeCCCC-hH-HhccCCEEEECC-----
Confidence 45777777644334455555444448999999887532 2345654 8876654212 12 236788886653
Q ss_pred CCCeecccchHHHHHHHhhCCCCeEe
Q 006152 536 NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 536 NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
| + .. +...-..|++.+||++-
T Consensus 77 -g-I-~~--~~p~~~~a~~~gi~i~~ 97 (438)
T PRK04663 77 -G-I-AL--ATPEIQQVLAAGIPVVG 97 (438)
T ss_pred -C-C-CC--CCHHHHHHHHCCCcEEE
Confidence 2 1 11 23566777888888873
No 442
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.71 E-value=1.5e+03 Score=27.09 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=44.3
Q ss_pred HhccCCCEEEeeCC-----hHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHH-HH-HHHHhCCCcEEEEcc-hHHHHHhh
Q 006152 450 TKIRDGDVLLTYGS-----SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI-NAISYIIH 521 (658)
Q Consensus 450 ~~I~dgdvILT~g~-----SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~-La-~eL~~~GI~vT~I~D-sAv~~~M~ 521 (658)
+++..|.+|+.+|- ++++..+...+...+...+|.++.+-++.-|.. -. ..-...|+++....+ ..+..++.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 45677888888864 455555544444443334566666555554432 12 222346777776544 33444444
Q ss_pred ---hccEEEEcc
Q 006152 522 ---EVTRVFLGA 530 (658)
Q Consensus 522 ---~Vd~VlvGA 530 (658)
+.|.|||=.
T Consensus 425 ~l~~~DLVLIDT 436 (559)
T PRK12727 425 RLRDYKLVLIDT 436 (559)
T ss_pred HhccCCEEEecC
Confidence 567777643
No 443
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=20.67 E-value=6.4e+02 Score=26.17 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=66.3
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEE----EeC--CCCCch------HHHHHHHHHhCCCcEEEEcc----------
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVV----IVD--SRPKHE------GKLLLRRLVRKGLSCTYTHI---------- 513 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~Vi----V~E--SRP~~E------G~~La~eL~~~GI~vT~I~D---------- 513 (658)
..||+||.++.+...+... |...+.+ +++ +-...+ -.++...|.+.|++..-++-
T Consensus 30 ~~VlVHGgg~~i~~~~~~~---gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~~ 106 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAA---GVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLDK 106 (248)
T ss_pred cEEEEeCCCHHHHHHHHHc---CCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECcC
Confidence 5799999999886655442 3222111 111 111111 23345667778876443321
Q ss_pred --------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCC-eEeecc
Q 006152 514 --------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP-VLVCCE 564 (658)
Q Consensus 514 --------------sAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VP-VyV~ae 564 (658)
..+-.++..=...++.-+++..+|.++|--|=...+.+|++.+.- ++.++.
T Consensus 107 ~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 107 DKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred ccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 233344455566788888888999999999999999999999864 555554
No 444
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.64 E-value=5.4e+02 Score=28.93 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCcEE-EEcchHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEeec
Q 006152 495 KLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (658)
Q Consensus 495 ~~La~eL~~~GI~vT-~I~DsAv~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV~a 563 (658)
.++.+.|.+.||++. +++++...-+ +.... |+-. -+.+..+++..-.+ +.|++|++.+.
T Consensus 181 ~el~~lL~~~Gi~v~~~lp~~~~~d~-~~~~~---~~~~-----~~~~~~~~~~A~~L-~~~GiP~~~~~ 240 (427)
T PRK02842 181 DQLTLEFKKLGIGVVGFLPARRFTEL-PAIGP---GTVV-----ALAQPFLSDTARAL-RERGAKVLTAP 240 (427)
T ss_pred HHHHHHHHHcCCeeEEEeCCccHHHH-hhcCc---CcEE-----EEeCHHHHHHHHHH-HHcCCccccCC
Confidence 566788899999986 7777654332 22110 1111 12344555655566 88999998764
No 445
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=20.56 E-value=1.4e+02 Score=33.41 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=23.4
Q ss_pred CEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCC
Q 006152 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS 488 (658)
Q Consensus 456 dvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ES 488 (658)
.+||..|.+..-..+++.|++.| ++|+++++
T Consensus 3 kkili~g~g~~~~~~~~aa~~lG--~~vv~~~~ 33 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKELG--IKTVAVHS 33 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHcC--CeEEEEEC
Confidence 36899999988778899998765 45666654
No 446
>PRK07904 short chain dehydrogenase; Provisional
Probab=20.56 E-value=3.7e+02 Score=27.29 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=44.4
Q ss_pred ccCCCEEEeeCChHHHHHHHHHH-HHcCCeeEEEEeCCCCCchHHHHHHHHHhCC-CcEEEE-cc----hH----HHHHh
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYT-HI----NA----ISYII 520 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A-~e~gk~f~ViV~ESRP~~EG~~La~eL~~~G-I~vT~I-~D----sA----v~~~M 520 (658)
+-++.+||..|.|+-+...|... .++| .++|+++.-++...-.++..+|...| ..++++ +| +. +..++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 44567888888887766555443 3332 36888876554433345566676654 355554 23 22 22333
Q ss_pred h--hccEEEEcc
Q 006152 521 H--EVTRVFLGA 530 (658)
Q Consensus 521 ~--~Vd~VlvGA 530 (658)
. ++|.+|.++
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 2 588888765
No 447
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=20.50 E-value=5e+02 Score=26.18 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCeeEEEEeCCCCCch--HHHHHHHHHhCCCcEEEEc-chHHHHHhh
Q 006152 469 MILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (658)
Q Consensus 469 ~vL~~A~e~gk~f~ViV~ESRP~~E--G~~La~eL~~~GI~vT~I~-DsAv~~~M~ 521 (658)
..|....++|++ -|+++..-|.+- |..|...|.+.|+++++|+ .|++.+++.
T Consensus 68 ~~i~~~~~~g~~-V~~l~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a 122 (236)
T TIGR01469 68 RLLVELAREGKK-VVRLKGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAA 122 (236)
T ss_pred HHHHHHHHCCCe-EEEEeCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHH
Confidence 334444445553 334567888664 5677788888899999997 567666665
No 448
>PRK09105 putative aminotransferase; Provisional
Probab=20.41 E-value=9.3e+02 Score=26.15 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=35.1
Q ss_pred ccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc
Q 006152 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (658)
Q Consensus 452 I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D 513 (658)
+....+++|.|.+.++..++....+.| -+|++.+ |.+.+.... +...|+++..+..
T Consensus 93 v~~e~I~it~Gs~~ai~~~~~~l~~~g--d~Vli~~--P~y~~~~~~--~~~~g~~~~~v~~ 148 (370)
T PRK09105 93 LPADHVMAYAGSSEPLNYAVLAFTSPT--AGLVTAD--PTYEAGWRA--ADAQGAPVAKVPL 148 (370)
T ss_pred cChhhEEEcCChHHHHHHHHHHHcCCC--CEEEEeC--CChHHHHHH--HHHcCCeEEEecC
Confidence 345578899888888866665554434 3455543 777665433 4456887777643
No 449
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=20.18 E-value=3.7e+02 Score=28.53 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=53.0
Q ss_pred EEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEc---c-hHHHHHhhhccEEEE-cce
Q 006152 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-NAISYIIHEVTRVFL-GAS 531 (658)
Q Consensus 457 vILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~---D-sAv~~~M~~Vd~Vlv-GAd 531 (658)
+||..|.+--|...|..+..+...++|++++-++. .+...+...++...... | ..+..+++.+|.||= +|-
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~ 78 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD----RLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAI 78 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH----HHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECccc
Confidence 57777765444443433322222367887763221 11111222344433321 1 234456677888773 221
Q ss_pred eEe----cCCC---eecccchHHHHHHHhhCCCCeEeeccc
Q 006152 532 SVL----SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (658)
Q Consensus 532 aV~----aNG~---VvNKiGT~~lAl~Ak~~~VPVyV~aet 565 (658)
... .+-. -.|-.||..+.-+|+.++..|+.+.-.
T Consensus 79 ~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 79 ATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred CChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 111 1111 125679999999999988887766554
No 450
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=20.14 E-value=9.7e+02 Score=24.71 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHH---cCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEcceeEec
Q 006152 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (658)
Q Consensus 464 SsaV~~vL~~A~e---~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~VlvGAdaV~a 535 (658)
+...+.++++|++ ...++-|=|--|. +|.+.+++|.+.||+|.....-.+...+--.. .||+-|..
T Consensus 60 ~~~~~~mi~~a~~l~~~~~~i~iKIP~T~---~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (213)
T TIGR00875 60 SLDAEGMVEEAKELAKLAPNIVVKIPMTS---EGLKAVKILKKEGIKTNVTLVFSAAQALLAAK---AGATYVSP 128 (213)
T ss_pred eCCHHHHHHHHHHHHHhCCCeEEEeCCCH---HHHHHHHHHHHCCCceeEEEecCHHHHHHHHH---cCCCEEEe
Confidence 3345566777664 2344444343333 89888999999999998777655555443211 26666554
No 451
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=20.13 E-value=3.9e+02 Score=25.93 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=45.7
Q ss_pred CCCEEEeeC--ChHHHHHHHHHHHHcCCeeEEEEeCC--CCCc-hHHHHH-HHHHhCCCcEEEEcchHHHHHhhhccEEE
Q 006152 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDS--RPKH-EGKLLL-RRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (658)
Q Consensus 454 dgdvILT~g--~SsaV~~vL~~A~e~gk~f~ViV~ES--RP~~-EG~~La-~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vl 527 (658)
+|.+|.-.| ++.++...+.-+..-|..+.++..+. -|.. +-...+ ....+.|..+++. ..+...++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 356677777 57888887777777787776666555 2221 122233 3445568778777 45666777888776
Q ss_pred E
Q 006152 528 L 528 (658)
Q Consensus 528 v 528 (658)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 452
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.12 E-value=1.8e+02 Score=29.04 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEE-cceeEecCCCeecccchHHHHHHH--hhCCCCeEeeccccc
Q 006152 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL-GASSVLSNGTVCSRVGTACVAMVA--YGFHIPVLVCCEAYK 567 (658)
Q Consensus 495 ~~La~eL~~~GI~vT~I~DsAv~~~M~~Vd~Vlv-GAdaV~aNG~VvNKiGT~~lAl~A--k~~~VPVyV~aetyK 567 (658)
+.+.+.|.+.|+++.++.+.. -+..+|.+|+ |-.+...........|- ..++.- ...++||+-+|--+-
T Consensus 13 ~~v~~~l~~~g~~~~~~~~~~---~l~~~d~lilPG~g~~~~~~~~l~~~~~-~~~l~~~~~~~~~pvlGiC~G~Q 84 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKNPK---DLQKADKLLLPGVGSFKEAMKNLKELGF-IEALKEQVLVQKKPILGICLGMQ 84 (201)
T ss_pred HHHHHHHHHCCCeEEEECCHH---HHcCCCEEEECCCCchHHHHHHHHHcCc-HHHHHHHHHhCCCcEEEECHhHH
Confidence 455677778888888877643 2356888766 32222222222233342 233332 346899997765443
No 453
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=20.09 E-value=1.1e+03 Score=25.52 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHHHhccCCCEEEeeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCcEEEEcc---hHHHHHhhh
Q 006152 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE 522 (658)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SsaV~~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~D---sAv~~~M~~ 522 (658)
+..+++....+.|++-+.+.+.+.+|..+...++.. +++.+. ... ..+..-+...|+++..+.. ..+..++..
T Consensus 97 ~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~-~v~~~~--~~h-~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~ 172 (402)
T TIGR01821 97 AELADLHGKESALVFTSGYVANDATLATLAKIIPGC-VIFSDE--LNH-ASMIEGIRHSGAEKFIFRHNDVAHLEKLLQS 172 (402)
T ss_pred HHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCC-EEEEcc--hHh-HHHHHHHHHcCCeEEEECCCCHHHHHHHHHh
Confidence 333444443344444333445555565544322333 344431 122 2333344557887766532 234445542
Q ss_pred c----cEEEEcceeEec-CCCeecccchHHHHHHHhhCCCCeEe
Q 006152 523 V----TRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 523 V----d~VlvGAdaV~a-NG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
. .++|+ .+.+.. +|.+.. --.++-+|++|++.++|
T Consensus 173 ~~~~~~~~v~-~e~~~~~~G~~~~---l~~i~~l~~~~~~~liv 212 (402)
T TIGR01821 173 VDPNRPKIIA-FESVYSMDGDIAP---IEEICDLADKYGALTYL 212 (402)
T ss_pred ccCCCCeEEE-EcCCCCCCCCccC---HHHHHHHHHHcCCEEEE
Confidence 2 23333 222332 344433 24466688889875553
No 454
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=20.02 E-value=6e+02 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeEe
Q 006152 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (658)
Q Consensus 516 v~~~M~~Vd~VlvGAdaV~aNG~VvNKiGT~~lAl~Ak~~~VPVyV 561 (658)
+..++..=..+|+....+..+|.++|--+=...+.+|...+.--++
T Consensus 142 i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li 187 (268)
T PRK14058 142 LKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALV 187 (268)
T ss_pred HHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEE
Confidence 3334444345666556555667777665666666788887765333
Done!