RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006152
(658 letters)
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family. This family
includes initiation factor 2B alpha, beta and delta
subunits from eukaryotes, initiation factor 2B subunits
1 and 2 from archaebacteria and some proteins of unknown
function from prokaryotes. Initiation factor 2 binds to
Met-tRNA, GTP and the small ribosomal subunit. Members
of this family have also been characterized as
5-methylthioribose- 1-phosphate isomerases, an enzyme of
the methionine salvage pathway. The crystal structure of
Ypr118w, a non-essential, low-copy number gene product
from Saccharomyces cerevisiae, reveals a dimeric protein
with two domains and a putative active site cleft.
Length = 281
Score = 264 bits (677), Expect = 9e-84
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 13/289 (4%)
Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFL 405
G A IA L+ I+D TP +L ++ S + FLI RP +VS+GNAI L
Sbjct: 4 GSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAIDRL 59
Query: 406 KSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS 465
I+++ S EAK +L + FI+E I A R I A I+DGD +LT+ +S
Sbjct: 60 LRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCNSG 118
Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525
V +L+ AH+ GK+FRV++ +SRP+ +G+L + LV+ G+ T +A+ Y++ EV +
Sbjct: 119 TVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEVDK 178
Query: 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDP 585
V +GA +L+NG + +++GT +A++A ++P V E YKF R LD E DP
Sbjct: 179 VIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEERDP 238
Query: 586 DSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMV 634
+ + I ENL++ N +D TP + ++LIIT+ G++
Sbjct: 239 EEV-LYRTGVRIA-------PENLKVRNPAFDYTPPELITLIITEVGVL 279
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B
alpha/beta/delta family [Translation, ribosomal
structure and biogenesis].
Length = 301
Score = 218 bits (557), Expect = 7e-66
Identities = 84/314 (26%), Positives = 156/314 (49%), Gaps = 21/314 (6%)
Query: 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSF 387
+ P V + + S +I G + IA +A + D P + L + +
Sbjct: 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAPTVEELIDAIRELSET---- 57
Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
L+ RP +VS+GN IRF+ + + +L + FI+ + A I +
Sbjct: 58 LVKARPTAVSLGNLIRFVLRD----SSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEI 112
Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
+I DGDV+LT+ S V +L+ A + GK+F+V++ +SRP+ EG+++ + L + G+
Sbjct: 113 GAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIP 172
Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
T +A+ + V +V +GA ++L+NG + +++GT+ +A+ A +P V E+YK
Sbjct: 173 VTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232
Query: 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627
F + LD++ EL DP +++ NL++ N +D TP +Y+ I
Sbjct: 233 FVPKTLLDTLVEIELRDPLEVAREEPL------------GNLKVRNPAFDVTPPEYIDAI 280
Query: 628 ITDYGMVSHTLVSV 641
IT+ G++ + +
Sbjct: 281 ITELGIIPPSSIYR 294
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit
delta; Provisional.
Length = 310
Score = 137 bits (348), Expect = 3e-36
Identities = 77/273 (28%), Positives = 145/273 (53%), Gaps = 14/273 (5%)
Query: 360 EAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSES 419
EA++D + + A++ + + LI RP +VS+ NA+R++ + +
Sbjct: 31 EALKDQAEKSDAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS----GETVE 86
Query: 420 EAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK 479
EA+ ++ E FI ++ I + +IRDGDV++T+ +SSA +++ AHE GK
Sbjct: 87 EARESVIERAEEFIESSENAVEK-IGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGK 145
Query: 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTV 539
V+ ++RP+++G + + L G+ T +A+ Y + +V +V +GA ++ +NG V
Sbjct: 146 DIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAV 205
Query: 540 CSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINH 599
+++GT+ +A+ A+ +P +V E YKF + L + E DP + +P E+I
Sbjct: 206 INKIGTSQIALAAHEARVPFMVAAETYKFSPKTLLGELVEIEERDPTEV--LP--EEI-- 259
Query: 600 LDGWDKSENLQLLNLIYDATPSDYVSLIITDYG 632
L +++ N +D TP +Y+ IIT+ G
Sbjct: 260 LAKLP---GVKVRNPAFDVTPPEYIDAIITEIG 289
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2
family. The delineation of this family was based
originally, in part, on a discussion and
neighbor-joining phylogenetic study by Kyrpides and
Woese of archaeal and other proteins homologous to the
alpha, beta, and delta subunits of eukaryotic initiation
factor 2B (eIF-2B), a five-subunit molecule that
catalyzes GTP recycling for eIF-2. Recently, Sato, et
al. assigned the function ribulose-1,5 bisphosphate
isomerase [Energy metabolism, Other].
Length = 301
Score = 128 bits (324), Expect = 4e-33
Identities = 73/275 (26%), Positives = 135/275 (49%), Gaps = 18/275 (6%)
Query: 360 EAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSES 419
A+R+ + + A++ + + LI RP +VS+ NA+R++ ++
Sbjct: 26 AALREQAEKSDAASPEEFRAEMRAAANILISTRPTAVSLPNALRYVLKYMS----GADVE 81
Query: 420 EAKATLHSDIERFIN--EKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL 477
+ ++ + FIN EK A I + +IRDGDV++T+ +S A +++ A E
Sbjct: 82 TLRQSVIERADEFINRSEK---AQERIGEIGAKRIRDGDVIMTHCNSEAALSVIKTAFEQ 138
Query: 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG 537
GK V++ ++RP+++G + + L G+ T +A Y + EV V +GA ++ +NG
Sbjct: 139 GKDIEVIVTETRPRNQGHITAKELRDYGIPVTLIVDSAARYYMKEVDHVVVGADAITANG 198
Query: 538 TVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDI 597
V +++GT+ +A+ A +P +V E YKFH + + E DP + + +
Sbjct: 199 AVINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEEDLKQL 258
Query: 598 NHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYG 632
++ N +D TP +YV IIT+ G
Sbjct: 259 GNVKVR---------NPAFDVTPPEYVDAIITERG 284
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related
uncharacterized proteins. This model, eIF-2B_rel,
describes half of a superfamily, where the other half
consists of eukaryotic translation initiation factor 2B
(eIF-2B) subunits alpha, beta, and delta. It is unclear
whether the eIF-2B_rel set is monophyletic, or whether
they are all more closely related to each other than to
any eIF-2B subunit because the eIF-2B clade is highly
derived. Members of this branch of the family are all
uncharacterized with respect to function and are found
in the Archaea, Bacteria, and Eukarya, although a number
are described as putative translation intiation factor
components. Proteins found by eIF-2B_rel include at
least three clades, including a set of uncharacterized
eukaryotic proteins, a set found in some but not all
Archaea, and a set universal so far among the Archaea
and closely related to several uncharacterized bacterial
proteins [Unknown function, General].
Length = 303
Score = 106 bits (266), Expect = 3e-25
Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 23/259 (8%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVK 446
FL+ RP +V++ A+ + + S EAK +L + I E + +R I +
Sbjct: 55 FLLSTRPTAVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEEDL-ETNRKIGE 110
Query: 447 HAVTKIRDGDVLLTYGSSSAVEM--------ILQHAHELGKQFRVVIVDSRPKHEG-KLL 497
+ I+DGD +LT+ ++ A+ +++ A E GK+ RV+ ++RP+++G +L
Sbjct: 111 NGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQGSRLT 170
Query: 498 LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555
L++ G+ T + +Y + E+ V +GA + NG V +++GT +A++A F
Sbjct: 171 AWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEF 230
Query: 556 HIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLI 615
IP V F + E DP+ +++V G +++ N
Sbjct: 231 RIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVR--------IAPLGVKVYNPA 282
Query: 616 YDATPSDYVSLIITDYGMV 634
+D TP D + IIT+ G++
Sbjct: 283 FDITPHDLIDAIITEKGII 301
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit
alpha; Validated.
Length = 275
Score = 84.8 bits (210), Expect = 4e-18
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
+ + P S+ N RF IPI+ + K+ + R + E A R I
Sbjct: 55 IPEVNPTMASLYNLARF-------IPITNNPELVKSRAEEFL-RLMEE----AKREIGNI 102
Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
I DGDV++T+ SSAV IL+ A GK+F+V++ +S P +EG L L G+
Sbjct: 103 GSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIE 162
Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
+ E T +GA +V +G V ++ GT +A+ + +P V E +K
Sbjct: 163 FEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFK 222
Query: 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627
FH ++ E++ ++ + ++ N+++D TP YV I
Sbjct: 223 FHPELK--------------------SEEVELVERPYARQGHRVRNVLFDVTPWKYVRGI 262
Query: 628 ITDYGMV 634
IT+ G++
Sbjct: 263 ITELGIL 269
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B
subunit, eIF-2B alpha/beta/delta family [Translation,
ribosomal structure and biogenesis].
Length = 346
Score = 68.8 bits (169), Expect = 2e-12
Identities = 66/279 (23%), Positives = 113/279 (40%), Gaps = 71/279 (25%)
Query: 392 RPLSVSMGNAIRFLK-----SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVK 446
RP +V++ A+ + + K P EA+ D+E +R I +
Sbjct: 91 RPTAVNLFWALDRMLNAAKEAIEVKEPKESILQEAEEIAEEDLEA---------NRAIGE 141
Query: 447 HAVTKIRDGDVLLT-----------YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG- 494
+ + DGD +LT YG++ V ++ AHE GK RV ++RP +G
Sbjct: 142 NGAELLPDGDTVLTHCNAGALATVGYGTALGV---IRSAHEEGKDIRVFADETRPYLQGA 198
Query: 495 KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552
+L LV+ G+ T NA +++ + V +GA + +NG V +++GT +A++A
Sbjct: 199 RLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLA 258
Query: 553 YGFHIPVLV------------CCEAYKFHERVQLDSICSNELGDPDSISKVPGR----ED 596
IP V E ER DP+ + +V G E
Sbjct: 259 KHHGIPFYVAAPLSTIDFELKSGEDIPIEER------------DPEEVLEVGGVRIAPEG 306
Query: 597 INHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVS 635
+ N +D TP + ++ IIT+ G+ +
Sbjct: 307 VE------------AYNPAFDVTPPELITGIITEKGVFT 333
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 363
Score = 64.4 bits (157), Expect = 5e-11
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 414 ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTY----------GS 463
I L + EAK + + A+ + + + K+ DGD +LT G
Sbjct: 135 IELLKVEAKKIFEEEYD---------AEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGL 185
Query: 464 SSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIHE 522
+A+ + + A LG V+ ++RP +G +L + L+ +G+ T A+ ++++
Sbjct: 186 GTALAPV-KLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYK 244
Query: 523 --VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSN 580
V V +GA +L +G V +++GT A++A+ IP F + ++ +
Sbjct: 245 DMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDVNDVKIE 304
Query: 581 ELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMV 634
E DP+ + + G E++ + N ++D TP Y++ IIT+ G++
Sbjct: 305 ER-DPNEVRTIRGV--------PITPEDVNVYNPVFDVTPPKYITGIITEKGII 349
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate
isomerase. The delineation of this family was based in
part on a discussion and neighbor-joining phylogenetic
study, by Kyrpides and Woese, of archaeal and other
proteins homologous to the alpha, beta, and delta
subunits of eukaryotic initiation factor 2B (eIF-2B), a
five-subunit molecule that catalyzes GTP recycling for
eIF-2. This clade is now recognized to include the
methionine salvage pathway enzyme MtnA [Amino acid
biosynthesis, Aspartate family].
Length = 331
Score = 64.2 bits (157), Expect = 5e-11
Identities = 64/296 (21%), Positives = 131/296 (44%), Gaps = 47/296 (15%)
Query: 361 AIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESE 420
A R+ + A + + +L+ RP +V++ A+ +++ + + ++
Sbjct: 59 AAREADERE------EFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAAK---TVAD 109
Query: 421 AKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD----VLLT-----------YGSSS 465
K L ++ ER I E+ + +R I ++ I+ G +LT YG++
Sbjct: 110 IKEALLAEAER-ILEEDLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTAL 168
Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--E 522
V ++ AHE G+ V ++RP+ +G +L LV++G+ T + ++++ E
Sbjct: 169 GV---IRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGE 225
Query: 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582
V V +GA + +NG +++GT +A++A +P V + + E
Sbjct: 226 VDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEE 285
Query: 583 GDPDSISKVPGR----EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMV 634
P+ ++ V G I D W N +D TP++ ++ IIT+ G++
Sbjct: 286 RPPEEVTHVGGVRIAPPGI---DVW---------NPAFDVTPAELITGIITEKGVI 329
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit
delta; Provisional.
Length = 253
Score = 62.6 bits (152), Expect = 8e-11
Identities = 42/209 (20%), Positives = 84/209 (40%), Gaps = 21/209 (10%)
Query: 433 INEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH 492
+ I +++ ++HA D V+ T SS ++ + + ++ V I++SRP
Sbjct: 66 LKLGIEKHEKMAIEHAKPLFND-SVIGTISSSQVLKAFISSSEKIK---SVYILESRPML 121
Query: 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552
EG + + LV+ G+ ++ + V V +G+ SVL +G + + GT +A+ A
Sbjct: 122 EGIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCA 181
Query: 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLL 612
P + K + NH + + ++ +
Sbjct: 182 RYLKKPFYSLTISMKIERNFLYSTY----------------PNFKNH-PCSEWNIDIPCI 224
Query: 613 NLIYDATPSDYVSLIITDYGMVSHTLVSV 641
N +D TP D + I + G V + V++
Sbjct: 225 NRYFDKTPPDLIDYYINENGFVKPSDVNI 253
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 329
Score = 58.0 bits (140), Expect = 6e-09
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 40/256 (15%)
Query: 392 RPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451
RP + + AIR++ S A R+ E II + I ++
Sbjct: 89 RPTAYDLFKAIRYMNSN--------EFDMNAA------RRYAME-IIGRSKKIGEYGNEL 133
Query: 452 IRDGDVLLTYGSSSAVEMI--------LQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLV 502
I++G +LT+ ++ A+ ++ ++ AH GK V + ++RP+ +G +L L
Sbjct: 134 IKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELA 193
Query: 503 RKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560
++G+ NA Y + E+ V +GA + SNG +++GT A++A IP
Sbjct: 194 QEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFY 253
Query: 561 VCCEAYKFHERVQLDSICSNELGDPDSISKVPGRE--DINHLD-GWDKSENLQLLNLIYD 617
V F S + GD I + E +IN G +S N +D
Sbjct: 254 VAAPGSTFD--------FSIKSGDEIPIEERDENEVLEINGCRIGPQESHA---RNPAFD 302
Query: 618 ATPSDYVSLIITDYGM 633
TP++YV+ IT+YG+
Sbjct: 303 VTPNEYVTGFITEYGI 318
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 339
Score = 57.0 bits (138), Expect = 1e-08
Identities = 64/279 (22%), Positives = 123/279 (44%), Gaps = 43/279 (15%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAI-RFLKS--------QIAKIPISLSESEAKATLH 426
+L + L RP +V++ + R LK+ +I I + EA+
Sbjct: 73 ELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALDAEDVEEIRDIALR----EAERIAE 128
Query: 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTY---GSSSAVEM-----ILQHAHELG 478
D+ R +++I KH + DGD +LT+ G + V+ +++ A E G
Sbjct: 129 EDVAR---------NKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQG 179
Query: 479 KQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVLS 535
K+ +V+ ++RP ++G +L L++ + T + ++ + V +V +GA +
Sbjct: 180 KEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITR 239
Query: 536 NGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGRE 595
+ V +++GT +++A IP V F S+ E DPD + G+
Sbjct: 240 D-AVFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEGSV-KIEERDPDELRYC-GKT 296
Query: 596 DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMV 634
I +++ + N +DATP + V+ IIT+ G+
Sbjct: 297 QI-------APKDVPVYNPAFDATPMENVTAIITEKGVF 328
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.
Length = 344
Score = 54.4 bits (132), Expect = 7e-08
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 36/239 (15%)
Query: 416 LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT-----------YGSS 464
L +E KA L + I+E+ + +R I +H +T IR G +LT YG++
Sbjct: 109 LPGAERKAALEEEAIE-IHEEDVEINRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTA 167
Query: 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYII--H 521
A + A E G V ++RP+ +G +L L + G+ T N ++++
Sbjct: 168 LAP---IYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTG 224
Query: 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQL-DSICSN 580
++ V +GA + +NG V +++GT +A+ A +P V + + I
Sbjct: 225 KIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIE 284
Query: 581 ELGDPDSISKVPGR----EDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMVS 635
E DP+ +++V G E + + N +D TP++ ++ IIT+ G+V+
Sbjct: 285 ER-DPEEVTEVGGVRIAPEGV---KVY---------NPAFDVTPAELITGIITEKGIVA 330
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 50.3 bits (120), Expect = 3e-06
Identities = 49/240 (20%), Positives = 69/240 (28%), Gaps = 10/240 (4%)
Query: 6 SSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRH- 64
RA +D + G +PLPPD DPP P +P A+ P P + PP R
Sbjct: 2597 RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP---SPSPAANEPDPHPPPTVPPPERPR 2653
Query: 65 ----PSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRG 120
P PR A SP + +T+ + PP
Sbjct: 2654 DDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPH 2713
Query: 121 RGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEV 180
S + P+ AP +VPA T P G +
Sbjct: 2714 ALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA--RPARPPTTAGPPAPAP 2771
Query: 181 QSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP 240
+ A + + A +E+ + A A AL A P P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
Score = 48.8 bits (116), Expect = 1e-05
Identities = 50/251 (19%), Positives = 77/251 (30%), Gaps = 14/251 (5%)
Query: 4 RRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPR 63
+R R P V + + P PP + P + +TPL + SP + P
Sbjct: 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740
Query: 64 HPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGS 123
P+ P P P+ PP+ + + P+ A+ + S
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
Query: 124 -------SVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVK--LPPGISENAGG 174
A++ P P S+ P + LP G S GG
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG 2860
Query: 175 SVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAA----KAEGIKTPAATALANA 230
V S R+ +KP R A R+ ++ A + E P A
Sbjct: 2861 DVRRRPPS-RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
Query: 231 KPTKSTRPSPQ 241
+P P PQ
Sbjct: 2920 QPQPPPPPQPQ 2930
Score = 38.8 bits (90), Expect = 0.011
Identities = 49/252 (19%), Positives = 73/252 (28%), Gaps = 28/252 (11%)
Query: 26 LPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFP-PP 84
+PP R P +P ++ +P P R P P P P PP
Sbjct: 2568 VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPP 2627
Query: 85 SPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVR--GRGSSVKQQGAASSFPGGG---- 138
P+ + P A RV R + + ASS P
Sbjct: 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRA 2687
Query: 139 -----------FEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGS-------VSVEV 180
+ PP P P + VS LPPG + S V
Sbjct: 2688 ARPTVGSLTSLADPPPPPPTPEPAPHA---LVSATPLPPGPAAARQASPALPAAPAPPAV 2744
Query: 181 QSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP 240
+ A P + A AA AA + PA +L+ ++ + + P
Sbjct: 2745 PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
Query: 241 QRNDSPVVVAAS 252
+ V+ A+
Sbjct: 2805 ADPPAAVLAPAA 2816
Score = 33.8 bits (77), Expect = 0.38
Identities = 27/119 (22%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFP- 82
P P S PP P P A+ S P PP + + A
Sbjct: 417 TPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDA 476
Query: 83 -----PPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPG 136
PP P LG D + AA AR S + S FP
Sbjct: 477 LRERRPPEPPGADLAELLGRHPDTAGTVVRLAAREAAIAREVAECSRLTINALRSPFPA 535
Score = 33.8 bits (77), Expect = 0.38
Identities = 55/244 (22%), Positives = 76/244 (31%), Gaps = 36/244 (14%)
Query: 5 RSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFL------SPVM 58
R A P AP PP P + P A+ P +P+
Sbjct: 249 RGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLA 308
Query: 59 IPPPRHPSSSL--------------------LPRLPHSPSDAFPPPSPTTTTTTTSLGDF 98
+P P P LPR FP T T +SL
Sbjct: 309 LPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSL--- 365
Query: 99 SDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTT 158
+D++A P A+ R R S+ + PGG + P+ P+SVP T
Sbjct: 366 -EDLSAGRHHPKRASLPTRKRR--SARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTP 422
Query: 159 VSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEG 218
V PP A S E SD P ++ + A A + A + A A
Sbjct: 423 VPASAPPP----PATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALR 478
Query: 219 IKTP 222
+ P
Sbjct: 479 ERRP 482
Score = 33.4 bits (76), Expect = 0.52
Identities = 45/239 (18%), Positives = 64/239 (26%), Gaps = 41/239 (17%)
Query: 35 PPDPIHSTPLADASSP-----------GNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P P++ P A+A P G P P P + ++LP P +
Sbjct: 2475 PGAPVYRRP-AEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEP--VGEPVH- 2530
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSPPSAAAA---------------------AARVRGRG 122
P T L + + D PP AA A R R
Sbjct: 2531 --PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARR 2588
Query: 123 SSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQS 182
Q A P P PS +P P + V
Sbjct: 2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
Query: 183 DRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQ 241
P + S+ R + RAA+A++ + + AA T P P
Sbjct: 2649 PERPRDDPAPGRVSR--PRRARRLGRAAQASSPPQRPRRRAARP-TVGSLTSLADPPPP 2704
Score = 30.3 bits (68), Expect = 4.8
Identities = 23/106 (21%), Positives = 28/106 (26%), Gaps = 7/106 (6%)
Query: 13 PKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPR 72
P VR++ A + + PPD P A P P P P P P
Sbjct: 2881 PPVRRLA--RPAVSRSTESFALPPDQPERPPQPQAPPP-----PQPQPQPPPPPQPQPPP 2933
Query: 73 LPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARV 118
P P+ G A P A RV
Sbjct: 2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 47.2 bits (112), Expect = 3e-05
Identities = 43/236 (18%), Positives = 74/236 (31%), Gaps = 22/236 (9%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSP 86
P + + + A++ G P + ++L P+ + + A +P
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPK-AAAAAAATRAEAP 426
Query: 87 TTTTTTTSLGDFSDDVTAASSP-PSAAAAAARVRGRGSSVKQQGAASSFPGGG--FEVPP 143
+ D DD +P P+ A A A R Q A S + PP
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPP 486
Query: 144 SVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203
+ A+ + + +P + A + D + P + A
Sbjct: 487 DAAFEPAPRAAAPSAATPAAVPDARAPAA------ASREDAPAAAAPPAPEARPPTPAAA 540
Query: 204 QEAQRAAKAAA-----KAEGIK-------TPAATALANAKPTKSTRPSPQRNDSPV 247
A RA AAA + G++ AA A A P + +P+ R V
Sbjct: 541 APAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQV 596
Score = 40.2 bits (94), Expect = 0.004
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 11/151 (7%)
Query: 103 TAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVV 162
P A + A + G P+V A + + L +
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAP-----GARAAAAVGASAVPAVTAVTGAAGAALAPKAAA 416
Query: 163 KLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTP 222
+E + + +DR + + RA+ + E P
Sbjct: 417 AAAATRAEAPPAAPAPPATADRG------DDAADGDAPVPAKANARASADSRCDERDAQP 470
Query: 223 AATALANAKPTKSTRPSPQRNDSPVVVAASE 253
A + + + P P +P A S
Sbjct: 471 PADSGSASAPASDAPPDAAFEPAPRAAAPSA 501
Score = 39.4 bits (92), Expect = 0.006
Identities = 31/185 (16%), Positives = 51/185 (27%), Gaps = 10/185 (5%)
Query: 74 PHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASS 133
P + A P P + +A +A AA + A +
Sbjct: 373 PARVAGAVPAPGARAAAAVGA---------SAVPAVTAVTGAAGAALAPKAAAAAAATRA 423
Query: 134 FPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKE 193
PP+ A G V +++ + +D S P +
Sbjct: 424 EAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483
Query: 194 KTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQ-RNDSPVVVAAS 252
A A + A A A A P + P+P+ R +P A +
Sbjct: 484 APPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA 543
Query: 253 EKKGG 257
+ GG
Sbjct: 544 ARAGG 548
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 41.4 bits (97), Expect = 0.001
Identities = 43/209 (20%), Positives = 62/209 (29%), Gaps = 20/209 (9%)
Query: 46 DASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAA 105
A +PV P P +P+ A PP +P + A
Sbjct: 371 GAGPATAAAAPVAQPAPA-----AAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR 425
Query: 106 SSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLP 165
SP A AAAR A + P + A ++ PA + +
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPA--------PAAAPAAAARPA-----AAGPRPV 472
Query: 166 PGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAAT 225
+ A + A + P E+ AA A AE I PA
Sbjct: 473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532
Query: 226 ALANAKPTKSTRPSPQRNDSPVVVAASEK 254
+A T P+P +P AA+E
Sbjct: 533 DPDDAFETL--APAPAAAPAPRAAAATEP 559
Score = 34.5 bits (79), Expect = 0.23
Identities = 37/215 (17%), Positives = 55/215 (25%), Gaps = 16/215 (7%)
Query: 13 PKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPR 72
V Q AP + PP + P A A++ +P P ++
Sbjct: 380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439
Query: 73 LPHSP-SDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAA 131
P P P+P + AA+ P AAAAA R + A
Sbjct: 440 SARGPGGAPAPAPAPAAAPAAAA-------RPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492
Query: 132 SSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL 191
P E+PP +P+ P G + + D P
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPD--------AAPAGWVAESIPDPATADPDDAFETLAPA 544
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATA 226
A E A + +
Sbjct: 545 PAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579
Score = 34.5 bits (79), Expect = 0.23
Identities = 40/203 (19%), Positives = 59/203 (29%), Gaps = 5/203 (2%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P P P + P A A +P + P ++ + P S A
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPP 143
+ + G A ++ P+AAA A R + AA++ P
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAA----AAAAAPARAAPAAA 488
Query: 144 SVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203
A P P + A E D A + P + A A
Sbjct: 489 PAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA-TADPDDAFETLAPAPAA 547
Query: 204 QEAQRAAKAAAKAEGIKTPAATA 226
A RAA A + P A+A
Sbjct: 548 APAPRAAAATEPVVAPRPPRASA 570
Score = 34.1 bits (78), Expect = 0.30
Identities = 24/116 (20%), Positives = 36/116 (31%)
Query: 136 GGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKT 195
GGG + AP + PA + P A + + RA+ + P +
Sbjct: 369 GGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP 428
Query: 196 SKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAA 251
+ A ++A A A AA A A RP + AA
Sbjct: 429 APEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Score = 29.8 bits (67), Expect = 6.0
Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 1/115 (0%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLP-HSPSDAFP 82
A P + P + P A + + P PP S + + A
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES 525
Query: 83 PPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGG 137
P P T + + AA +P +AAA V R G F G
Sbjct: 526 IPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 39.1 bits (92), Expect = 0.008
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 175 SVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTK 234
S +VE + R +K E+ +KAE A+ +A A+A A A A
Sbjct: 35 SSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEA 94
Query: 235 STRPSPQRNDSPVVVAASE---------------KKGGDRSVEKDRKKDVPHPRMQYDDK 279
+ RP+ P AA KK + K + + +
Sbjct: 95 AARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRR 154
Query: 280 SRVQKLKKRSVVKPTEARNR 299
R ++ KK+ KPTE R
Sbjct: 155 GRRRRRKKKKKQKPTEKIPR 174
Score = 34.1 bits (79), Expect = 0.30
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Query: 179 EVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRP 238
+ A + A R A EA R A+AAA+ K A K +
Sbjct: 76 AAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKR 135
Query: 239 SPQRN----DSPVVVAASEKKGGDRSVEKDRKKDVPHPR-MQYDDKSRVQKLKKRSVVKP 293
R + R +K +K PR + + V +L ++ VK
Sbjct: 136 KAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPETITVAELAEKMAVKA 195
Query: 294 TE 295
E
Sbjct: 196 AE 197
Score = 29.0 bits (66), Expect = 8.7
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 7/119 (5%)
Query: 178 VEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAA-------AKAEGIKTPAATALANA 230
+EV+S + + K + A +AA AKAE A A A
Sbjct: 29 IEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEA 88
Query: 231 KPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRS 289
P +++ A+ ++ + K +K P + +R K K
Sbjct: 89 AAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGG 147
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 39.0 bits (90), Expect = 0.010
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 184 RALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRN 243
+A K E E++ EA++ A+ A KA+ K A A A K ++
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Query: 244 DSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRS--VVKPTEARNRVE 301
A +E + E +K + + + K + KK++ K EA+ + E
Sbjct: 1345 AE---AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
Score = 37.8 bits (87), Expect = 0.022
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 184 RALNSKPLKEKTSKAE-RRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQR 242
+A +K +E KAE + EA++ A+ A KA+ K A A A K + ++
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Query: 243 NDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVE 301
D A E K D + + + K + + ++K + +LKK +K E + + E
Sbjct: 1512 ADE--AKKAEEAKKADEAKKAEEAKKADEAK-KAEEKKKADELKKAEELKKAEEKKKAE 1567
Score = 34.7 bits (79), Expect = 0.18
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 181 QSDRALNSKPLKEKTSKAERRA------IQEAQRAAKAA-AKAEGIKTPAATALANAKPT 233
+++ A + K+K +A+++A +EA++AA+AA A+AE A A A+
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
Query: 234 KSTRPSPQRNDSPVVVAASEKKGGDRSVEK--DRKKDVPHPRMQYDDKSRVQKLKKRS-- 289
+ + ++ A EKK D + +K + KK + K + + KK++
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Query: 290 VVKPTEARNRVE 301
K EA+ + E
Sbjct: 1430 KKKADEAKKKAE 1441
Score = 32.4 bits (73), Expect = 0.86
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 193 EKTSKAE--RRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVA 250
E KAE ++ +EA++A + E K A A+ + + R + +
Sbjct: 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK-ADELKK 1285
Query: 251 ASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVE 301
A EKK D + + + KK + + ++ + + KK K EA+ + +
Sbjct: 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK----KAEEAKKKAD 1332
Score = 32.4 bits (73), Expect = 0.88
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 170 ENAGGSVSVEVQSDRALNSKPLKEKTSKAE---RRAIQEAQRAAKAAAKAEGIKTPAATA 226
+ ++ +A K E+ KAE ++A + ++ A+ A KAE +K A
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 227 LANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLK 286
A+ K + + + A E K + E+D+KK + ++K ++ LK
Sbjct: 1715 KKKAEELK-------KAEEENKIKAEEAK---KEAEEDKKK-AEEAKKDEEEKKKIAHLK 1763
Query: 287 KRSVVKPTEARNRVE 301
K K E R E
Sbjct: 1764 KEEEKKAEEIRKEKE 1778
Score = 32.4 bits (73), Expect = 1.0
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
Query: 179 EVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRP 238
E++ A K + K E++ EA++ A+ A KA+ K A A + K +
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK--KA 1466
Query: 239 SPQRNDSPVVVAASEKKGGDRSVEK--DRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEA 296
+ A E K D + +K + KK + + K + + KK K +
Sbjct: 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
Query: 297 RNRVE 301
+ E
Sbjct: 1527 AKKAE 1531
Score = 30.5 bits (68), Expect = 4.3
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 181 QSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALAN-AKPTKSTRPS 239
+++ A + K+K +A+++A EA++AA+A KA+ K A+ AK + + +
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKA-DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA 1536
Query: 240 PQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNR 299
+ + A E K + + + KK + +DK+ L+K K E R
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN--MALRKAEEAKKAE-EAR 1593
Query: 300 VELFRHLPQYE 310
+E L + E
Sbjct: 1594 IEEVMKLYEEE 1604
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 37.4 bits (87), Expect = 0.018
Identities = 19/94 (20%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 23 NAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFP 82
A P S P + S + +PP S P
Sbjct: 179 PASASPSDPPSSSPGVPSFPSPPEDPSSPS---DSSLPPAPSSFQSDTPPPSPESPTNPS 235
Query: 83 PPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAA 116
PP + TA +PPSA+A A
Sbjct: 236 PPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Score = 34.7 bits (80), Expect = 0.14
Identities = 23/105 (21%), Positives = 34/105 (32%)
Query: 29 DRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTT 88
+ + +S P DA S P PS P P SPSD+ PP+P++
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218
Query: 89 TTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASS 133
+ T + P AA V+ + S
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 38.0 bits (88), Expect = 0.018
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 13/217 (5%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP 84
P + +D P P+ + P+ +P P+ PP+ + P P++ + PP
Sbjct: 328 VPPKESDAADGPKPVPTKPV----TPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPP 383
Query: 85 SPTTTTTTTSLGDFSDDVTAASSP--------PSAAAAAARVRGRGSSVKQQGAASSFPG 136
+ T +S S V A + P P +A+ V K+ S +
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443
Query: 137 GGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTS 196
PP+ +P++ +VS P + + A + + + + N +PL
Sbjct: 444 YEDLKPPTSPSPTAPTGVS-PSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAV 502
Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPT 233
+ + AA A +A PT
Sbjct: 503 YDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPT 539
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 36.4 bits (84), Expect = 0.024
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 198 AERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASE 253
AE +A +AQRA + A K E A +P + RP P+ V S+
Sbjct: 104 AEAKARVQAQRAEQQAKKREE-APAAGEKPTAERPATAARPKPKAPREEVHTPVSD 158
>gnl|CDD|150334 pfam09633, DUF2023, Protein of unknown function (DUF2023). This
protein of approx.120 residues consists of three beta
strands and five alpha helices, thought to fold into a
homo-dimer. It is expressed in bacteria.
Length = 101
Score = 34.2 bits (79), Expect = 0.034
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 471 LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV----TRV 526
H +E K R +++ + P+ E + RL + G I Y I V V
Sbjct: 4 QHHIYEFQKGVRSLVLMTLPRREAEEATARLRKYG----------IDYHIQPVGTEKINV 53
Query: 527 FLGASS 532
F G
Sbjct: 54 FFGRPE 59
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 36.9 bits (86), Expect = 0.037
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 22 TNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAF 81
+N P Q PP P + PL ++ +P PP +SS P+D+
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASS--NAPAQIPADSS 575
Query: 82 PPPSPTTTTTTTSLGDFSDDVTAASS 107
PPP T + D S + ++
Sbjct: 576 PPPPIPEEPTPSPTKDSSPEEIDKAA 601
>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional.
Length = 400
Score = 36.3 bits (84), Expect = 0.040
Identities = 45/179 (25%), Positives = 60/179 (33%), Gaps = 20/179 (11%)
Query: 97 DFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGL 156
D+ +D+T A AA G+G VK PG P + +S PA GL
Sbjct: 152 DYYEDLTPERLEEIIDAFAA---GKGPVVK--------PG------PQIGRYASEPAGGL 194
Query: 157 T--TVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAA 214
T T K S+ + V+ L A EA R A A
Sbjct: 195 TSLTEEAGKARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADA 254
Query: 215 K-AEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHP 272
+ +KTPA A AK K+ P + A E + K +D P P
Sbjct: 255 ETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRP 313
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 36.7 bits (85), Expect = 0.041
Identities = 44/269 (16%), Positives = 66/269 (24%), Gaps = 32/269 (11%)
Query: 18 VGFFTNAPLPPDRTQSDP---PDPIHSTPLAD-ASSPGNFL---------------SPVM 58
FF P P D + A+ A+ P
Sbjct: 18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT 77
Query: 59 IPPPRHPSS----SLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAA 114
P S SL P SP+ SPT ++ A+ P A
Sbjct: 78 EAPANESRSTPTWSLSTLAPASPA---REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDL 134
Query: 115 AARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGG 174
+ +R GS A+ G S A S A L++ P +
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS---SPPA 191
Query: 175 SVSVEVQSDRALNSKPLKEKTSKAERRAIQEA---QRAAKAAAKAEGIKTPAATALANAK 231
A P + A + A A A A + + ++
Sbjct: 192 EPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251
Query: 232 PTKSTRPSPQRNDSPVVVAASEKKGGDRS 260
+ P P P + + G S
Sbjct: 252 ENECPLPRPAPITLPTRIWEASGWNGPSS 280
Score = 36.3 bits (84), Expect = 0.070
Identities = 31/137 (22%), Positives = 43/137 (31%), Gaps = 10/137 (7%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
PLP + P ++ SS S P R PS S P SP P
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS-----PSSPGSGPAP 309
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPP 143
SP +++++S + S T++SS S AA + S
Sbjct: 310 SSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP-----SS 364
Query: 144 SVKAPSSVPASGLTTVS 160
K P A S
Sbjct: 365 PRKRPRPSRAPSSPAAS 381
Score = 34.8 bits (80), Expect = 0.19
Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 11/239 (4%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPS-----SSLLPRLPHSPS 78
P + P P S+P++ ++S S SS P
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252
Query: 79 DAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGG 138
+ P P P T T + + S +S P A+++++ S + P
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312
Query: 139 FEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKA 198
S + S +S ++ S +S S S S
Sbjct: 313 RASSSSSSSRESSSSSTSSS-SESSRGAAVSPGPSPSRSPSPSRPPPPADPS-----SPR 366
Query: 199 ERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGG 257
+R A + A+A + A A+ +T P P + A G
Sbjct: 367 KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425
Score = 34.0 bits (78), Expect = 0.28
Identities = 23/169 (13%), Positives = 40/169 (23%), Gaps = 16/169 (9%)
Query: 2 DSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHS-TPLAD----------ASSP 50
+ R +S P P + A +S
Sbjct: 264 TLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE 323
Query: 51 GNFLSPVMIPPPRHPSSSLLPRLPH-SPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPP 109
+ S ++ P SPS + PPP ++ + A+S
Sbjct: 324 SSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
Query: 110 SAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTT 158
AR +++ A FP G P + +
Sbjct: 384 RPTRRRAR-AAVAGRARRRDATGRFPAG---RPRPSPLDAGAASGAFYA 428
Score = 32.1 bits (73), Expect = 1.2
Identities = 33/238 (13%), Positives = 68/238 (28%), Gaps = 25/238 (10%)
Query: 24 APLPPDRTQSDPPDPIHSTPLAD-----ASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPS 78
A P SD + A +P + + P +S PR S
Sbjct: 155 AGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPIS 214
Query: 79 DAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGG 138
+ P+P + +AA ++++ ++ G +
Sbjct: 215 ASASSPAP------------APGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262
Query: 139 FEVPPSVKAPS--SVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTS 196
+P + S + P+S S S S S P +S
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPAS----SSSSPRERSPSPSPSSPGSGPAPSSPRASSSS 318
Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALA--NAKPTKSTRPSPQRNDSPVVVAAS 252
+ R + + ++ +++ + + + + ++P PS R A S
Sbjct: 319 SSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit
beta; Validated.
Length = 356
Score = 36.1 bits (83), Expect = 0.052
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 514 NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
N +++ + V + +GA +++NG +++GT +A++A IP F
Sbjct: 228 NMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIP---------FFTV 278
Query: 572 VQLDSI-CSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITD 630
L +I S + G I + E++ G + ++ + N +D TP Y++ IITD
Sbjct: 279 APLSTIDMSLKSGKEIPIEERS-PEEVLTCGGCRIAPDVDVYNPAFDVTPHKYLTGIITD 337
Query: 631 YGMV 634
G+V
Sbjct: 338 RGVV 341
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 36.2 bits (83), Expect = 0.063
Identities = 49/223 (21%), Positives = 67/223 (30%), Gaps = 25/223 (11%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
+ P R +S P P P + SP PPP+ PSS P P PP
Sbjct: 602 SAQRPTRPKS-PKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPP 660
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPP 143
SP F DD A++ + S+ ++ + PG F P
Sbjct: 661 KSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPET-PGTPFTTPR 719
Query: 144 SVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI 203
+ P +P P G E D + P +E+T E A
Sbjct: 720 PL--PPKLP----RDEEFPFEPI-------GDPDAEQPDDIEFFTPPEEERTFFHETPA- 765
Query: 204 QEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSP 246
AE K A T + +R DSP
Sbjct: 766 ----DTPLPDILAEEFKEEDIHA-----ETGEPDEAMKRPDSP 799
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 35.3 bits (82), Expect = 0.064
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 189 KPLKEKTSKA---ERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDS 245
K L+E +KA +RA Q+A++ A K + + + + R
Sbjct: 101 KQLEE--AKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Query: 246 PVVVAASEKKGGDR 259
V SE G
Sbjct: 159 TPVSDISELTVGQA 172
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 34.4 bits (79), Expect = 0.076
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 161 VVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIK 220
V L G S N S + Q + + ++ + +K E++ +E + A K A K
Sbjct: 79 YVTLAEGYSINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKT 138
Query: 221 TPAATALANAKPTK 234
T T A K T
Sbjct: 139 TKNTTKKATKKTTT 152
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 34.9 bits (80), Expect = 0.11
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 172 AGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAK 231
S + +V +A + +K +K +A ++A++ AK A K K A A K
Sbjct: 218 KAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALK----KAAKAVKKAAKK 273
Query: 232 PTKSTRPSPQRNDSPVVVAASEKK--GGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRS 289
K+ + + A KK G + K P+ K + KKR+
Sbjct: 274 AAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKRA 333
Score = 32.6 bits (74), Expect = 0.61
Identities = 32/164 (19%), Positives = 50/164 (30%), Gaps = 20/164 (12%)
Query: 92 TTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSV 151
T +G V AA++ +A AA+ + +S K + AA S K +
Sbjct: 184 TREIGRVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKK---------VSKKKAAKT 234
Query: 152 PASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAK 211
S ++ K + KA ++A + A +AAK
Sbjct: 235 AVSAKKAAKTAAKAAKKAKKTA-----------KKALKKAAKAVKKAAKKAAKAAAKAAK 283
Query: 212 AAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKK 255
AAKA K A S + + KK
Sbjct: 284 GAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKK 327
Score = 31.0 bits (70), Expect = 2.2
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 188 SKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPV 247
K K+K +K A + A+ AAKAA KA+ KT K K+ + + ++
Sbjct: 224 KKVSKKKAAKTAVSAKKAAKTAAKAAKKAK--KTAKKAL---KKAAKAVKKAAKKAAKAA 278
Query: 248 VVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVK 292
AA + K +KK K+ + K+ + K
Sbjct: 279 AKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGK 323
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 35.2 bits (82), Expect = 0.11
Identities = 46/209 (22%), Positives = 65/209 (31%), Gaps = 67/209 (32%)
Query: 102 VTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSV 161
+ AA + +AAA AA AA+ P+ AP++ A+ V
Sbjct: 75 IEAAGAAAAAAAPAA-------------AAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVE 121
Query: 162 VKLPP--GISE--------NAGGSVS-----VEVQSDRALNSKP------LKEKTSK--- 197
VK+P I+E G +V + V++D+A P +KE K
Sbjct: 122 VKVPDIGEITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD 181
Query: 198 ------------AERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRND- 244
A A A AA A PA A A P + +
Sbjct: 182 KVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241
Query: 245 ----SPVV-------------VAASEKKG 256
SP V V + KKG
Sbjct: 242 APHASPAVRRLARELGVDLSQVKGTGKKG 270
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 35.2 bits (81), Expect = 0.12
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 182 SDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQ 241
+D+AL + E ++AE R + AQ+AA+AA + + K A A A TK +
Sbjct: 244 ADKALAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAA 303
Query: 242 RNDSPVVVAASEKK 255
+ AA++ K
Sbjct: 304 AKKAETAKAATDAK 317
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 34.6 bits (79), Expect = 0.15
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 168 ISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATAL 227
I +N G V V S R L +K + E+ + I+ A++ A + + L
Sbjct: 396 IEDNEGARVH-NVNSGRPLLAK-VNERNRRRNHTEIRLAEQRMNEEAATATPMSAPTSVL 453
Query: 228 ANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDV 269
P+ ST P+ N S VV ASEK K ++
Sbjct: 454 TQPSPSLSTSIMPKLNPSESVVVASEKASSPDLSPKLLPSEI 495
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 34.6 bits (80), Expect = 0.18
Identities = 22/216 (10%), Positives = 37/216 (17%), Gaps = 11/216 (5%)
Query: 13 PKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPR 72
P P P + P P + A + +P + P HP +P
Sbjct: 603 PASSGPPEEAARPAAPAAP-AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661
Query: 73 LPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAAS 132
+ A + P+ A A A
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721
Query: 133 SFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLK 192
G P P +
Sbjct: 722 PQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP------- 774
Query: 193 EKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALA 228
+ +E + E + A+
Sbjct: 775 ---PPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
Score = 33.0 bits (76), Expect = 0.66
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 55 SPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAA 114
+ P P+++ P +P P P+P S + A S PP+AA +
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQ---PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463
Query: 115 AARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASG 155
A ++ + A + P + AP++ A
Sbjct: 464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504
Score = 31.9 bits (73), Expect = 1.2
Identities = 29/224 (12%), Positives = 48/224 (21%), Gaps = 17/224 (7%)
Query: 44 LADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVT 103
+ A P P P P +P+ P +P + + S
Sbjct: 588 VGPAPGAAGGEGP---PAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPA 644
Query: 104 AASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVK 163
+ P V A + P A + PA
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA-------- 696
Query: 164 LPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKA-----AAKAEG 218
P A + Q+D P + + A A +
Sbjct: 697 -APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
Query: 219 IKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVE 262
+ P A A A + P ++ + D
Sbjct: 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799
Score = 30.7 bits (70), Expect = 3.0
Identities = 29/171 (16%), Positives = 40/171 (23%), Gaps = 12/171 (7%)
Query: 102 VTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSV 161
V A P AA SS + AA P + + A
Sbjct: 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA------ 637
Query: 162 VKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKT 221
S V+ + + + +A A A A
Sbjct: 638 -----EASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAA 692
Query: 222 PAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHP 272
PA A A P + P + D P +G VP P
Sbjct: 693 PAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSP-AADDPVPLP 742
Score = 30.3 bits (69), Expect = 4.4
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
AP + P P + A A +P PP ++ P P A P
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAP-------APPSPAGNAPAGGAPSPPPAAAPS 463
Query: 84 PSPTTTTT--------------TTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQ 127
P + AA + P+ A AA +R R +
Sbjct: 464 AQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPEILA 521
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 34.3 bits (79), Expect = 0.22
Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 4/129 (3%)
Query: 104 AASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVK 163
AA + A + A ++ P + + + P + V
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA 428
Query: 164 LPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPA 223
A + V A ++ E + R A + A +A A A PA
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA----PA 484
Query: 224 ATALANAKP 232
A L +
Sbjct: 485 AARLTPTEE 493
>gnl|CDD|224787 COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family
domains [General function prediction only].
Length = 436
Score = 33.5 bits (77), Expect = 0.32
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 412 IPIS-LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMI 470
IP+ + E +A HS+I R + L D + +H +++ G L G + VE+
Sbjct: 29 IPMVVIEELDATKRGHSEIGRNARQASRLLDELRNEH--GRLKAGIPLGNKGGTLHVELN 86
Query: 471 LQHAHELGKQFRVVIVDSR 489
Q++ +L FR + D+R
Sbjct: 87 HQNSTKLPNGFREGVNDNR 105
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 33.8 bits (77), Expect = 0.32
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 191 LKEKTSK-AERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQR--NDSPV 247
LKE+ S+ +RA Q + K A+ + A A NA + Q+ + P
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262
Query: 248 VVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKK 287
S K D+ V +++K+++ + Q + K ++ K
Sbjct: 263 PADTSSPK-EDKQVAENQKREI--EKAQIEIKKNDEEALK 299
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 33.5 bits (77), Expect = 0.32
Identities = 28/147 (19%), Positives = 35/147 (23%), Gaps = 20/147 (13%)
Query: 20 FFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSD 79
FF + R P + G PPP SS
Sbjct: 176 FFLSCGGV--RGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSS----------- 222
Query: 80 AFPPPSPTTTTTTTSLGDFSDDVTAASSPP------SAAAAAARVRGRGSSVKQQGAASS 133
FPPP ++ G P A A + G + S
Sbjct: 223 -FPPPYGPGAGPSSGYGSGGTRSGQGGWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSY 281
Query: 134 FPGGGFEVPPSVKAPSSVPASGLTTVS 160
G P S SS +S T S
Sbjct: 282 GSGSPSYSPSSSSNSSSSSSSSSTRTS 308
>gnl|CDD|216134 pfam00816, Histone_HNS, H-NS histone family.
Length = 92
Score = 31.1 bits (71), Expect = 0.33
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 191 LKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRP 238
L+++ A + A + A G+ A K K R
Sbjct: 10 LEKEIEAARKAERAAALAEIRELAAEYGLTLEELLGGAAKKKAKKKRA 57
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 32.7 bits (75), Expect = 0.37
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSP----- 246
K + KA ++ ++ + + A K+E + N + + +P N
Sbjct: 14 KREQRKARKKQKRKEAKKKEDAQKSEAE------EVKNEENKSKKKAAPIENAEGNIVFS 67
Query: 247 -VVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKR 288
V A E+ D ++K +KK D K ++KL+ R
Sbjct: 68 KVEFADGEQAKKDLKLKKKKKKKKT------DYKQLLKKLEAR 104
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 33.5 bits (76), Expect = 0.39
Identities = 34/141 (24%), Positives = 45/141 (31%), Gaps = 7/141 (4%)
Query: 26 LPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPS 85
LP S P P+ P + PV+ P + PHS + PP S
Sbjct: 393 LPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKA--STHPHSGLHSGPPQS 450
Query: 86 PTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSV 145
P TS G + A PPS + R SS Q ++ GG P
Sbjct: 451 PFAQHPFTSGG-----LPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPP 505
Query: 146 KAPSSVPASGLTTVSVVKLPP 166
P + L + PP
Sbjct: 506 LPPIQIKEEPLDEAEEPESPP 526
Score = 30.8 bits (69), Expect = 3.1
Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 3/193 (1%)
Query: 2 DSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPP 61
D+R SS ++ P+ + ++A + Q P + S+P S +PP
Sbjct: 146 DNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPP 205
Query: 62 PRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGR 121
P ++ P PS +P + +S S A R
Sbjct: 206 QGSPIAAQPAPQPQQPSPLSLISAP-SLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHP 264
Query: 122 GSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQ 181
SS G P + P ++ PSS P P + A
Sbjct: 265 QSSHHGPG--PPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPS 322
Query: 182 SDRALNSKPLKEK 194
+P +E+
Sbjct: 323 QSALQPQQPPREQ 335
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 33.3 bits (76), Expect = 0.43
Identities = 40/260 (15%), Positives = 71/260 (27%), Gaps = 24/260 (9%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDA--- 80
A D T SD + S SP PP+ + ++ SPS A
Sbjct: 506 ASGREDETSSDAES-VVSIKELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPSTAGSP 564
Query: 81 FPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFE 140
P PS T F++ V + + V+ +GS+ + +
Sbjct: 565 RPKPSLGKFVIGTDPFAFANTVRLTDNMRGGNGVGSSVKPKGSASSK--PLTGPGSDLKP 622
Query: 141 VPPSVKAPSS----------------VPASGLTTVSVVK--LPPGISENAGGSVSVEVQS 182
+ K PSS +P+ S + + + ++
Sbjct: 623 ATLNGKTPSSSLVGAARNAGASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKN 682
Query: 183 DRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQR 242
D L ++ E + + + K + P ++ S
Sbjct: 683 DPYLWDTNGEKAGGGTESASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALDSASSPGGS 742
Query: 243 NDSPVVVAASEKKGGDRSVE 262
P + KG D V
Sbjct: 743 GGKPGLDGVEGAKGKDDDVV 762
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 33.6 bits (76), Expect = 0.45
Identities = 39/236 (16%), Positives = 68/236 (28%), Gaps = 17/236 (7%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
+ P T S P+ T +++P + P S + + + P
Sbjct: 471 SGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTP 530
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSP------PSAAAAAARVRGRGSSV-----KQQGAAS 132
TTT TS + V A+SP P V S + Q
Sbjct: 531 IVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTG 590
Query: 133 SFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLK 192
S P PS + S TT P S + G ++ ++ ++ +
Sbjct: 591 SSPTSQQPGIPSSSHSTPRSNSTSTT------PLLTSAHPTGGENITEETPSVPSTTHVS 644
Query: 193 EKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVV 248
+ + ++ + + N T + PS Q+ P V
Sbjct: 645 TLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTV 700
Score = 32.8 bits (74), Expect = 0.67
Identities = 41/193 (21%), Positives = 65/193 (33%), Gaps = 33/193 (17%)
Query: 9 ALIDPKVRQVGFFTNAPLPPDRTQSDPP---------DPIHSTPLADASSPGNFLSPVMI 59
P +G T A PP T S P P+++T +S + L+ +
Sbjct: 524 NATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVT 583
Query: 60 PPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSL-------GDFSDDVTAAS------ 106
SS + P PS + P +T+TT L G+ + T +
Sbjct: 584 TGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV 643
Query: 107 ---SPPSAAAAAARVRGRGSSVKQQGAASSFPGGGF---EVPPSVKAPSSVPASGLTTVS 160
SP ++V G G+S + S +PG +P S P+ T V
Sbjct: 644 STLSPGPGPGTTSQVSGPGNS-----STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVP 698
Query: 161 VVKLPPGISENAG 173
V G + +
Sbjct: 699 TVTSTGGKANSTT 711
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 33.0 bits (75), Expect = 0.52
Identities = 24/127 (18%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 142 PPSVKAPSSVPASGLTTVS-----VVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTS 196
P + + TV V ++ A +V+ ++ K ++
Sbjct: 924 PTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVK 983
Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKG 256
KA A A K A KA K A A A K + + V + KK
Sbjct: 984 KA---AATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKK-VAKKAPAKKVARKPAAKKA 1039
Query: 257 GDRSVEK 263
+ K
Sbjct: 1040 AKKPARK 1046
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 32.8 bits (75), Expect = 0.58
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 60 PPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVR 119
R P + P F P+ + + S ++A++ PSA +A +
Sbjct: 370 SGGRGPKQHIKP--------VFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPA 421
Query: 120 GRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPAS 154
G S P V P AP +V +
Sbjct: 422 GT------PPTVSVDPPAAVPVNPPSTAPQAVRPA 450
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 32.5 bits (74), Expect = 0.60
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAK 231
K E +KAE A E + +A +AE A A A K
Sbjct: 127 KQAAEAKAKAE--AEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 30.2 bits (68), Expect = 4.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAK 231
K+K + E +A Q A+ AKA A+AE A A +
Sbjct: 114 AEEKQKQA-EEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Score = 29.8 bits (67), Expect = 4.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTK 234
E KAE A +A+ AKA A+ K AA A A A+
Sbjct: 169 AEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAA 211
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 32.6 bits (74), Expect = 0.60
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Query: 84 PSPTTTTTTTSLGDFSDDVT--AASSPPSAAAAAARVRGRGSSVKQQG---AASSFPGGG 138
P+P TT+ + G+ DV+ SS P+ G+ V+ QG A + P
Sbjct: 53 PAPGTTSAEQTAGNTQQDVSLPPISSTPTQGQTPVATDGQ-QRVEVQGDLNNALTQPQNQ 111
Query: 139 FEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEK---- 194
++ +V S++P T + P + NA + ++R ++P +++
Sbjct: 112 QQLN-NVAVNSTLPTEPAT------VAPVRNGNASRQTAKTQTAERPATTRPARKQAVIE 164
Query: 195 ------TSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVV 248
T+K E + + + + + AA K PAAT+ K T +T P SP
Sbjct: 165 PKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQ--TASPAQ 222
Query: 249 VAASEKKGG 257
A+ GG
Sbjct: 223 TTATPAAGG 231
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 32.9 bits (76), Expect = 0.61
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 76 SPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFP 135
P P + + + A + P+ A AA AA++ P
Sbjct: 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96
Query: 136 GGGFEVPPSVKAPSSVPASGLTTVSVVKL---PPGISENAGGSVSV 178
P A ++ PA+ V L +++N S+ V
Sbjct: 97 -----AAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASLEV 137
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 32.6 bits (73), Expect = 0.65
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 12/151 (7%)
Query: 105 ASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKL 164
A++P AAAA A+ + A ++ PP+ A + PA +
Sbjct: 219 AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAA--APPAKAAAPPAKAAA 276
Query: 165 PPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAA 224
PP + + + P K + A+ A AA A A A K A
Sbjct: 277 PPAKAAAPPAKAA----------APPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAP 326
Query: 225 TALANAKPTKSTRPSPQRNDSPVVVAASEKK 255
A A P K+ P + +PV A KK
Sbjct: 327 PAKAATPPAKAAAPPAKAAAAPVGKKAGGKK 357
Score = 28.8 bits (63), Expect = 8.9
Identities = 40/164 (24%), Positives = 52/164 (31%), Gaps = 4/164 (2%)
Query: 100 DDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTV 159
D AA++ AAA A S K A + P KA ++ PA
Sbjct: 192 DAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKA-AAAPAKAAAAP 250
Query: 160 SVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGI 219
+ PP + + A +K A A A A AAA A+
Sbjct: 251 AKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAA 310
Query: 220 KTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEK 263
PA A A P K+ P + P AA K V K
Sbjct: 311 AAPAKAA---APPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGK 351
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 32.6 bits (74), Expect = 0.70
Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 18 VGFFTNAPLPPDRTQSDPPD-PIHSTPLADASSPGNFLSPVMIPPPR-HPSSSLLPRLPH 75
V TNA L P + P + + + PL + S+ G+ + + PR P+ +P P
Sbjct: 150 VEGATNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPR 209
Query: 76 SPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFP 135
P T T +TT +++ P+ + A + + + A P
Sbjct: 210 PTPRTTASPETTPTPSTT-------TSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTP 262
Query: 136 GGGFEVPPSVKAPSSVPASGLTTVSVVKL 164
GGG P + LT ++++
Sbjct: 263 GGGEAPPANATPAPEASRYELTVTQIIQI 291
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 32.2 bits (73), Expect = 0.76
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVV 248
K K+KT++ ++ A ++A + + A + KT + A K K + + + V
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTK--AAKKAAKVKKTKSVKTTTKKV 63
Query: 249 VAASEKKGGDRSVEKDRKK 267
EK + +K
Sbjct: 64 TVKFEKTESVKKESVAKKT 82
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 32.6 bits (75), Expect = 0.78
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKP 232
K L++K KAE++A +E A A KAE A K
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 31.8 bits (73), Expect = 1.4
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 15/64 (23%)
Query: 186 LNSKPLK----------EKTSKAERRAI-----QEAQRAAKAAAKAEGIKTPAATALANA 230
L+ KPL S AER+ + + ++A K A+ K A A A
Sbjct: 387 LHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Query: 231 KPTK 234
K
Sbjct: 447 KGPD 450
>gnl|CDD|188254 TIGR02845, spore_V_AD, stage V sporulation protein AD. Bacillus
and Clostridium species contain about 10 % dipicolinic
acid (pyridine-2,6-dicarboxylic acid) by weight. This
protein family, SpoVAD, belongs to the spoVA operon that
is suggested to act in the transport of dipicolinic acid
(DPA) from the mother cell, where DPA is synthesized, to
the forespore, a process essential to sporulation.
Members of this protein family are found, so far, in
exactly those species believed capable of endospore
formation [Cellular processes, Sporulation and
germination].
Length = 327
Score = 32.4 bits (74), Expect = 0.79
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 465 SAVEMILQHAHELGKQFRV--VIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIH 521
+A + I QH + G+ +IV G +LR L+++ G + + I
Sbjct: 203 AAADTIEQHFKDTGRTVDDYDLIVTGDLSRVGSEILRDLLKERGYDVGEKYDDCGLMIYR 262
Query: 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555
+VF G S G AC A+V YG
Sbjct: 263 PDQQVFAGGS------------GCACSAVVTYGH 284
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 32.6 bits (74), Expect = 0.85
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 58 MIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAAR 117
M+P P P SS P+ H PS P T++S G FS T +SS S+ + +
Sbjct: 803 MLPSPSSPLSSSSPKPEH-PSRKRPRRQ---EDTSSSSGPFSASSTKSSSKSSSTSKHRK 858
Query: 118 VRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASG 155
G+GSS ++ SS G S +
Sbjct: 859 TEGKGSSTSKEHKGSS---GDTPNKASSFPVPPLSNGS 893
Score = 29.9 bits (67), Expect = 5.4
Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 19/200 (9%)
Query: 74 PHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASS 133
P + S P P P +T L ++ + V P+ + ++ + ++++G
Sbjct: 430 PRTAS---PEPEPPSTNKW-QLDNWLNKVNPHKVSPAESVSSNPPIKQP--MEKEGKV-- 481
Query: 134 FPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL-K 192
G + P K P P S + E+ G QS+ + + K
Sbjct: 482 -KSSGSQYHPESKEPP--PKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGK 538
Query: 193 EKTSKAERRAIQEAQRAAK----AAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVV 248
++ K E+ + + + + G A S +PSP++ V
Sbjct: 539 KQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSV 598
Query: 249 VAASEK---KGGDRSVEKDR 265
A+EK K + V K R
Sbjct: 599 PPAAEKRKYKSPSKIVPKSR 618
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 32.4 bits (74), Expect = 0.86
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 184 RALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRN 243
N LK + + AE A + R A AAA+A + AA A + K T P
Sbjct: 229 LRANESRLKNEIASAEAAAAKA--REAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLI 286
Query: 244 DSPVVVAASEKK 255
S A +
Sbjct: 287 SSTGGFGALRGQ 298
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 32.2 bits (73), Expect = 0.89
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 76 SPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFP 135
+ A P +PT+ T T AS +AA A S ++ A++
Sbjct: 81 TGKVAPPAATPTSAPTPTP-------SPPASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 136 GGGFEVPPSVKAPSSVP--ASGLTT 158
PS PSS AS L
Sbjct: 134 ------SPSTSVPSSGSDAASTLVV 152
>gnl|CDD|237529 PRK13841, PRK13841, conjugal transfer protein TrbL; Provisional.
Length = 391
Score = 32.1 bits (73), Expect = 0.92
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 202 AIQEAQRAAKAAAKAEGIKTPAATA-----LANAK------PTKSTRPSPQRNDSP 246
I A AA +AAK + I +P A A LANAK + P P ND
Sbjct: 336 GIGSAGSAAGSAAKEKAIGSPGAYAGSLLGLANAKLDQQRGGPSAPPPPPPVNDKK 391
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 31.9 bits (73), Expect = 0.93
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 14/91 (15%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP 84
+P D + + P + ++P N +P + P +A P
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAP--------APAVDPQQNAVVAP 212
Query: 85 SPTTTTTTTSLGDFSDDVTAASSPPSAAAAA 115
S T + AA + P AA
Sbjct: 213 SQANVDTAAT------PAPAAPATPDGAAPL 237
Score = 30.0 bits (68), Expect = 4.5
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 75 HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVK----QQGA 130
+ +D P+P TT + V A +P A V ++V A
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226
Query: 131 ASSFPGGGFEVPPSVKAPSSVPASG 155
A + P G +P S+ A
Sbjct: 227 APATPDGAAPLPTDQAGVSTPAADP 251
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 32.1 bits (73), Expect = 1.00
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 77 PSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAA 116
+D P TT S TA +S P++ A
Sbjct: 55 EADNTETPVAATTAAEAP----SSSETAETSDPTSEATDT 90
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.1 bits (73), Expect = 1.0
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAK 231
K E KAE A ++A AK A AE K AA A A AK
Sbjct: 194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEA-KAAAAKAAAEAK 235
Score = 30.5 bits (69), Expect = 3.3
Identities = 20/77 (25%), Positives = 31/77 (40%)
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAA 251
K+ ++A+++A EA + A A AK + AA A A AK + AA
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAA 220
Query: 252 SEKKGGDRSVEKDRKKD 268
+E K + K
Sbjct: 221 AEAKAAAAKAAAEAKAA 237
Score = 29.0 bits (65), Expect = 8.4
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATA-------LANAKPTKSTRPSPQRND 244
K +KA A A++AA A A + AA L + K T + N
Sbjct: 224 KAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVDDLFGGLDSGKNAPKTGGGAKGNG 283
Query: 245 SPVVVAASEKKGGDRSVEKDR 265
+ A + KKGG + D+
Sbjct: 284 AQGAGAGNGKKGGASGADIDQ 304
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 31.9 bits (72), Expect = 1.1
Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 28/204 (13%)
Query: 99 SDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTT 158
+++VT + A AAA + + +++ +Q G EV KA + A+
Sbjct: 82 TEEVTEEEKAKAKAKAAAAAKAKAAALAKQKRE-----GTEEVTEEEKAAAKAKAAAAAK 136
Query: 159 VSVVKLPPGISENAGGSVSVEVQSDRALNSK-----------PLKEKTSKAERRAIQEAQ 207
L E E ++D+ L ++ + +E
Sbjct: 137 AKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVT 196
Query: 208 RAAKAAAKAEGIKT--PAATALANAKPTKSTRPSPQRNDSPVVVAASEKK---------- 255
KA AKA+ A ALA K ++ S + +AA++ K
Sbjct: 197 EEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAKTK 256
Query: 256 GGDRSVEKDRKKDVPHPRMQYDDK 279
G + E++ K++ P Y +K
Sbjct: 257 GAEGKKEEEPKQEEPSVNQPYLNK 280
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 32.0 bits (73), Expect = 1.2
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 36 PDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSL 95
+ +SS + P PR S L H+PS P + + + +L
Sbjct: 8 SRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASS-LLHTPSILPLPKLSSPSPPSVTL 66
Query: 96 GDFSDDVTAASSPPSAAAAAA 116
+ T +P AAAAA
Sbjct: 67 PPAATTQTPQLNPLQRAAAAA 87
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 31.7 bits (72), Expect = 1.3
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 22 TNAPLPPDRTQSDP-PDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDA 80
P + P P P + P A A++ PV P PR P
Sbjct: 368 PAKPTAAAPSPVRPTPAPS-TRPKAAAAANIPPKEPVRETATPPPVP---PRPVAPPVPH 423
Query: 81 FPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARV 118
P +P T + D +PP+ +
Sbjct: 424 TPESAPKLTRAAIPV-----DEKPKYTPPAPPKEEEKA 456
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 31.8 bits (72), Expect = 1.4
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 99 SDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTT 158
++ S + R GS+ + V + K + + T
Sbjct: 182 AERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAA-KGQAESSSKEANT 240
Query: 159 VSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEG 218
+ A S S S +N+ + + RA Q+A RA A K
Sbjct: 241 AG------DYATKAAASASAAHAS--EVNAANSATAAATSANRAKQQADRAKTEADKLGN 292
Query: 219 IKTPAAT 225
+ A
Sbjct: 293 MNGFAGA 299
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 31.7 bits (72), Expect = 1.5
Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 4/178 (2%)
Query: 85 SPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPS 144
+P SL FSD V A++A R SS K SS G P
Sbjct: 111 NPEDLVAADSLAFFSDAVIQVIKRKKASSAPRRGSW-DSSSKSASIDSSPTVIGPR--PR 167
Query: 145 VKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQ 204
+ ++ V + G +GG+ R + + + S + R+ +
Sbjct: 168 SFSELNLTDRTPAKVRSSRSELGAPSPSGGTSCPSSSGGRRSSIGSRRLRGSASLRKKVA 227
Query: 205 EAQRAAKAAAKA-EGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSV 261
K +++ + +P A + + P KS+ + + K +S
Sbjct: 228 VLSAPRKPGSRSSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSLRASPKDTSKSS 285
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 31.8 bits (73), Expect = 1.5
Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 43 PLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDV 102
P A P + P P ++ P +P A P P + + V
Sbjct: 361 PAAPLPEPE--VPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQA-----PAV 413
Query: 103 TAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVV 162
+ AA +++ + K + + + V +++ +SV +
Sbjct: 414 PLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
Query: 163 KLPPGISENAGGSVSVEVQSD---RALNSKPLKEKTSKAERRAIQEAQ 207
A V V+ + +AL EKT + + EA
Sbjct: 474 AKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAI 521
Score = 30.2 bits (69), Expect = 4.0
Identities = 27/152 (17%), Positives = 42/152 (27%), Gaps = 23/152 (15%)
Query: 102 VTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSV 161
+ PP +AA AA + + + PP AP PA
Sbjct: 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA----VPPPPASAPQQAPAV------- 413
Query: 162 VKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKT 221
+ S + + + L K K+E A A RA + E + +
Sbjct: 414 ---------PLPETTSQLLAARQQLQRAQGATKAKKSEPAA---ASRARPVNSALERLAS 461
Query: 222 PAATALANAKPTKSTRPSPQRNDSPVVVAASE 253
A K + +PV V
Sbjct: 462 VRPAPSALEKAPAKKEAYRWKATNPVEVKKEP 493
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 31.6 bits (72), Expect = 1.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 187 NSKPLKEKTSKAER----RAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTR 237
N L++ ++AER RA +EA+ AA+ K + K +T KPT+S R
Sbjct: 241 NESRLRDSIARAEREAKARAEREAREAARVRDKQKQAKRKGST----YKPTESER 291
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 31.5 bits (72), Expect = 1.6
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 112 AAAAARVR-GRGSSVKQQGAASSFPGGGFEVPPS------VKAPSSVPASGLTTVSVVKL 164
A A V G + F G +PP+ ++ + A+G+ V+ L
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDG--IPPAPRGVPQIEVTFDIDANGILNVTAKDL 467
Query: 165 PPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEG 218
G + S+ +++ L+ + ++ AE A + + A+ E
Sbjct: 468 GTGKEQ------SITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEA 515
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 31.6 bits (71), Expect = 1.7
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 14 KVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRL 73
+V Q + PP S P +S L +S+P P PR P + R
Sbjct: 847 QVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAP-----SWSSPQPRAPIRPIPTRF 901
Query: 74 PHSPSDAFPPPSPTTTTTTT 93
P PPP P +
Sbjct: 902 P-------PPPMPLQDSMAV 914
>gnl|CDD|236193 PRK08229, PRK08229, 2-dehydropantoate 2-reductase; Provisional.
Length = 341
Score = 31.1 bits (71), Expect = 1.7
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 185 ALNSKPLKEKTSK-AERRAIQEAQRAAKAAAKAEGIKTPAATAL 227
AL+ PLKE+ ++ + RR + AQR A KA GI+ T L
Sbjct: 196 ALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPL 239
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 31.3 bits (71), Expect = 1.7
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 5/96 (5%)
Query: 16 RQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPH 75
+ +G+ + +P P P P+ +P PP P + P+
Sbjct: 412 QPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQP----VMYPPN 467
Query: 76 SPSDAFPPPSPTTTTTTTSLGDFSDDVTA-ASSPPS 110
S P +T + G AS+ P
Sbjct: 468 YQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQ 503
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 31.1 bits (70), Expect = 1.9
Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 181 QSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP 240
+ A K E KAE A + AKA A A K A A K
Sbjct: 156 AAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE--- 212
Query: 241 QRNDSPVVVAASEKKGGDRSVEK 263
A +EKK + EK
Sbjct: 213 -------AKAKAEKKAEAAAEEK 228
Score = 30.7 bits (69), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 189 KPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKS 235
K+K + A ++A+ A+A AKAE AA A A+ K+
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKA 236
Score = 29.1 bits (65), Expect = 8.9
Identities = 17/71 (23%), Positives = 26/71 (36%)
Query: 193 EKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAAS 252
E+ KAE + A AAK A AE K A A + + + + A+
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAA 203
Query: 253 EKKGGDRSVEK 263
+K + K
Sbjct: 204 AEKAKAEAEAK 214
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.9 bits (70), Expect = 2.0
Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 14/111 (12%)
Query: 2 DSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPP-----DPIHSTPLADASSPGNFLSP 56
+ RR RA + N P P + S + SS +
Sbjct: 206 EDRR--RADDEDSEDDEEDNDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAKKNS 263
Query: 57 VMIPPPRHPSSSLLPR-------LPHSPSDAFPPPSPTTTTTTTSLGDFSD 100
IP PR SSL+ R SPS A P T +SL D
Sbjct: 264 RGIPKPRDALSSLVVRKKAAPESTSQSPSSAEPTSESPQTAGNSSLSSLGD 314
>gnl|CDD|215812 pfam00239, Resolvase, Resolvase, N terminal domain. The N-terminal
domain of the resolvase family (this family) contains
the active site and the dimer interface. The extended
arm at the C-terminus of this domain connects to the
C-terminal helix-turn-helix domain of resolvase - see
pfam02796.
Length = 139
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 199 ERRAIQEAQRAAKAAAKAEG 218
ER I E +A AAAKA G
Sbjct: 118 ERELISERTKAGLAAAKARG 137
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed.
Length = 413
Score = 31.0 bits (70), Expect = 2.1
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 166 PGISENAGGSVSVE---------VQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKA 216
P S+NA S VE VQ L S KE+ + E RA A A AAA
Sbjct: 231 PKRSKNARASKHVEPEIVPGVKGVQEALDLRSPERKERAAAREARAAAAAPAATAAAAAP 290
Query: 217 EGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQ 275
A A A ++ +R P + K DR ++ + P
Sbjct: 291 AEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAP 349
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal.
Mediator is a large complex of up to 33 proteins that is
conserved from plants through fungi to humans - the
number and representation of individual subunits varying
with species. It is arranged into four different
sections, a core, a head, a tail and a kinase-activity
part, and the number of subunits within each of these is
what varies with species. Overall, Mediator regulates
the transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 31.2 bits (71), Expect = 2.1
Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 17/111 (15%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP 84
P S STP +F SP P+ L + PP
Sbjct: 235 PPTQPIPFSRFNTSNSSTP-QSTPCTLSFPSPDQFGNA--PTPPLGENGNDNAPPVTPPG 291
Query: 85 SPTTTTTTTSLGDFSDD---VTAASSPPSAAAAAARVRGRGSSVKQQGAAS 132
SP+ + + L D D+ V + P + S+ + AS
Sbjct: 292 SPSESDPDSILVDIDDETWGVILSHRLPLSN-----------SLTRLALAS 331
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 31.0 bits (71), Expect = 2.1
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 3/136 (2%)
Query: 168 ISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATAL 227
I E GG + + A + + + A R E A AAAKAE A A
Sbjct: 55 IKEARGGGAAAAAATPAAPAAAARRAARAAAAARQ-AEQPAAEAAAAKAEAAPAARAAAA 113
Query: 228 ANAKPTKSTRPSPQRNDSPVVVAA--SEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKL 285
A A+ + + R AA + E+ + + +++ R ++
Sbjct: 114 AAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERR 173
Query: 286 KKRSVVKPTEARNRVE 301
++ R E
Sbjct: 174 RRGDREDRQAEAERGE 189
Score = 29.1 bits (66), Expect = 9.2
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 202 AIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASE 253
AI+EA+ AAA A AA A + + ++ A +
Sbjct: 54 AIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAA 105
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in
this family are typically between 145 and 1707 amino
acids in length. The family is found in association
with pfam01443, pfam01661, pfam05417, pfam01660,
pfam00978. There is a single completely conserved
residue L that may be functionally important.
Length = 115
Score = 29.3 bits (66), Expect = 2.2
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSP 86
P DPP P + P +S V + PP ++ P PPSP
Sbjct: 32 PESAHPDDPPPVGDPRPPVVDTPPP--VSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSP 89
Query: 87 TT 88
Sbjct: 90 LA 91
Score = 28.9 bits (65), Expect = 3.6
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 57 VMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAA 116
PPP + P S + P P+ D V + PPS A A
Sbjct: 37 PDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPP--DPEPPVPGPAGPPSPLAPPA 94
Query: 117 RVRG 120
R
Sbjct: 95 PARK 98
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 29.7 bits (67), Expect = 2.7
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
Query: 190 PLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVV 249
LK K + + A A TP A + +
Sbjct: 92 TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKK---KKAAAEAAAAEAAAPAAEAAAA 148
Query: 250 AASEKKG 256
AA+E++
Sbjct: 149 AAAEEEA 155
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 30.9 bits (69), Expect = 2.8
Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 82 PPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGF-E 140
PPPSP + A +S P R G G PGG F +
Sbjct: 113 PPPSPPRGGGAVRASSRRPEGAAPTSQPEGERKKKRFCKMGEPEHAGGNLIRLPGGRFAD 172
Query: 141 VPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLK---EKTSK 197
+P S P S V P + E+ S + +SK + E +
Sbjct: 173 LPAGSSLRSPRPYSFSHLPRRVFTHPFLFVFWFFFCLSEIPSRPSRHSKSGQSEAEDPAA 232
Query: 198 AERR-----------AIQEAQRAAKAAAKAEGIKTPAATALANAK 231
AE R ++EA+ AA+ AA+A + A A A+
Sbjct: 233 AEARRREADRREAADRLREAEEAAQDAARARQAEEAAREEAARAR 277
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 30.3 bits (69), Expect = 2.9
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 414 ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473
L +SE++ EK +A K A T I DGD + + + +
Sbjct: 56 AVLPDSESEYPFSERKALNTEEKRAIA-----KAAATLIEDGDTIF-LDAGTTTLAL--- 106
Query: 474 AHELGKQFRVVIV 486
A L + ++
Sbjct: 107 ARALPDDNNLTVI 119
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 30.2 bits (68), Expect = 3.0
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 15/145 (10%)
Query: 77 PSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPG 136
PSDA SP + + +D + S +A ++ + + P
Sbjct: 87 PSDAGSQASPDDDAQPAAEAEAADQSAPPEAS-STSATDEAATDPPATAAARDGPTPDPT 145
Query: 137 GGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTS 196
P ++P V PP S V+ +Q+ R + L
Sbjct: 146 AQPATPDERRSPR-------QRPPVSGEPPTPST-PDAHVAGTLQAARESLVETLARFAR 197
Query: 197 KAE-----RRAIQEAQRAAKAAAKA 216
+A RRA +E AA+ AA+A
Sbjct: 198 RAAATDDPRRA-REYLEAAREAAEA 221
>gnl|CDD|226350 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 30.7 bits (70), Expect = 3.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 179 EVQSDRALNSKPLKEKTSKAERRAIQEAQRAA----KAAAKAEGI 219
++ + + LKE + E+ I+EA AAK GI
Sbjct: 501 RPETTKQIEVGSLKEALEEYEKHLIREALERHGGNKSKAAKELGI 545
>gnl|CDD|223029 PHA03264, PHA03264, envelope glycoprotein D; Provisional.
Length = 416
Score = 30.4 bits (68), Expect = 3.1
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 25 PLPPDR-TQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P R T + P + D ++ G P PP P + P + FPP
Sbjct: 294 DGAPGRETGGEGEGPEPAGR--DGAAGGE---PKPGPPRPAPDADRPEGWPSLEAITFPP 348
Query: 84 PSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAA-------RVRGRGSSVKQQGAASSFPG 136
P+P T + AA++ AAA A R RG G ++ +F
Sbjct: 349 PTPATPAVPRARPVIVGTGIAAAAIACVAAAGAVAYFVYTRRRGAGPLPTKEKKLLAFGN 408
Query: 137 GGFEVPP 143
+ P
Sbjct: 409 VNYSALP 415
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 30.4 bits (69), Expect = 3.2
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHS--PSDAFP 82
P+PP + Q+ P + + + S P +P SSS RLP S P
Sbjct: 371 PVPPPKVQA-LPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGPRLS 429
Query: 83 PPSPTTTTTTTSLGDFSDDVTAASSPPSA 111
PSP+ + T G + + P +
Sbjct: 430 SPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
Score = 29.7 bits (67), Expect = 5.5
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 25 PLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLP--RLPHSPSDAFP 82
PL P T+ PP P S + SP P LLP RLP + P
Sbjct: 245 PLHPHTTRPSPPRPAFSRSPSSPLSP---------LPRPSTRRGLLPNPRLPRASRGHLP 295
Query: 83 PPSPTTTT 90
PP+ +
Sbjct: 296 PPTSSAPP 303
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 30.5 bits (68), Expect = 3.3
Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 20/118 (16%)
Query: 51 GNFLSPVMIPPPRHPSSSLLPRL------------PHSPSDAFPPPSPTTTTTTTSLGDF 98
G + +M P PS+S P + P P F PSP S G
Sbjct: 517 GMNMGGMMGFPMGGPSASPNPMMNGFAAGSMGMYMPFQPQPMFYHPSPQMMPVMGSNGAE 576
Query: 99 SDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGL 156
+ P+ AA G A +PGG PS +PA+G
Sbjct: 577 EGGGNISPHVPAGFMAAGPGAPMG--------AFGYPGGIPFQGMMGSGPSGMPANGS 626
>gnl|CDD|148580 pfam07046, CRA_rpt, Cytoplasmic repetitive antigen (CRA) like
repeat. This family consists of several repeats of
around 42 residues in length. These repeated sequences
are found in multiple copies in Trypanosoma cruzi
antigens, the cytoplasmic repetitive antigen (CRA)
contains 23 copies of this repeat.
Length = 42
Score = 27.0 bits (59), Expect = 3.3
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 192 KEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATA 226
K K ++A + A E QRAA+A AE K AA A
Sbjct: 4 KRKAAEAAKVAEAEKQRAAEATKVAEAEKQKAAEA 38
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated.
Length = 423
Score = 30.4 bits (69), Expect = 3.5
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 34 DPPDPIHSTPLADASSPGNFLSP--VMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTT 91
DP DP + + ++ G+ L P S++ P + P P T
Sbjct: 179 DPFDPDFWSKQVEVTTAGDLLPPGQAREQAQGAKSATAAPATVPQAAPL-PQAQPKKAAT 237
Query: 92 TTSLGDFSDDVTAASSPPSAAAAA 115
L + +AA AA
Sbjct: 238 EEELIADAKKAATGEPAANAAKAA 261
Score = 29.7 bits (67), Expect = 6.0
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 162 VKLPPGIS-ENAGGSVSVEVQSDRALNSKPL---KEKTSKAERRAIQEAQRAAKAAAKAE 217
LPPG + E A G+ S + PL + K + E I +A++AA A
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256
Query: 218 GIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKG 256
AKP + + A G
Sbjct: 257 AA--------KAAKPEPMPDDQQKEAEQLQAAIAQAIGG 287
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional.
Length = 659
Score = 30.4 bits (68), Expect = 3.5
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 41 STPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSD 100
L+ + SP P+ + R P S D P + ++ T + + +
Sbjct: 37 VASLSSSRSPLELKKPISKASATKTVTQEASRAPRSKLDL--PAAYSSFRGITPISEVRE 94
Query: 101 DVTAASSPPSAAAAAARVRGRGSSVKQQG 129
+S AA A RV GR +SV+ G
Sbjct: 95 RYGYLASGDRAAQATVRVAGRVTSVRDIG 123
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 30.0 bits (68), Expect = 3.5
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 51 GNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSP-P 109
G F S + PP SS+ + S S ++++ ++ + + P
Sbjct: 118 GGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSASSRTSSWVRSQNSNLEPFM 177
Query: 110 SAAAAAARVRGRGSSVKQQGAASSFPGG 137
A A V S+ G S+ P G
Sbjct: 178 PGALQTAWVTPPSSTASSSGTVSTVPKG 205
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 30.1 bits (68), Expect = 3.6
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P R + S + + L P + P R S PR +P+ P
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPI-SDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESP 207
Query: 84 PSPTTTTTTT--SLGDFSDDVTAASSPPSAAAAAARVRGRGSS 124
+ TT S T +SS + ++ G S
Sbjct: 208 SNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPRSGES 250
>gnl|CDD|212506 cd11647, Diphthine_synthase, Diphthine synthase, also known as
DPH5. Diphthine synthase, also known as diphthamide
biosynthesis S-adenosylmethionine-dependent
methyltransferase, participates in the posttranslational
modification of a specific histidine residue in
elongation factor 2 (EF-2) of eukaryotes and archaea to
diphthamide. It catalyzes the trimethylation step in
diphthamide biosynthesis. Diphthamide is the target of
diphtheria toxin, which ADP-ribosylates diphthamide and
inhibits protein synthesis, leading to host cell death.
Length = 241
Score = 29.8 bits (68), Expect = 3.7
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 18/74 (24%)
Query: 424 TLHSDIERFINEKIILADRVIVKHAVTKI----RDGDV-LLTYG--------SSSAVEMI 470
+E F ++II+ADR V+ +I ++ DV LL G S +
Sbjct: 41 GTLEALEEFYGKEIIVADREDVEEESDEILEEAKEKDVALLVVGDPFIATTHSDLRLR-- 98
Query: 471 LQHAHELGKQFRVV 484
A E G + RV+
Sbjct: 99 ---AKERGIEVRVI 109
>gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
GATA transcription factors mediate cell differentiation
in a diverse range of tissues. Mutation are often
associated with certain congenital human disorders. The
six classical vertebrate GATA proteins, GATA-1 to
GATA-6, are highly homologous and have two tandem zinc
fingers. The classical GATA transcription factors
function transcription activators. In lower metazoans
GATA proteins carry a single canonical zinc finger. This
family represents the N-terminal domain of the family of
GATA transcription activators.
Length = 177
Score = 29.4 bits (66), Expect = 3.7
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 43 PLADASSPGNFL-----SPVMIPPPRHPSSSL-LPRL--------PHSPS--DAFPPPSP 86
A G FL SPV +P R PS LP L H+ + + +
Sbjct: 13 QAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQAAA 72
Query: 87 TTTTTTTSLGDFSDDVTAASSPPSAAAAA 115
++ + + SPP +
Sbjct: 73 ESSAFNPGSPHPPVGFSYSHSPPMSNGGG 101
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 30.2 bits (68), Expect = 3.8
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 21 FTNAPLPPDRTQS--DPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPS 78
F+ PL +++S PDP P +S P P L P + S
Sbjct: 160 FSADPLSALQSESLIAQPDPAGGAPSISRNSEAPLSDPASAGGIDTPFPDDLDVPPIAAS 219
Query: 79 DAFPPPSPTTTTTTTSLGD 97
P PT + + + D
Sbjct: 220 PPGPQEGPTISASQPAQRD 238
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 30.6 bits (69), Expect = 4.0
Identities = 33/182 (18%), Positives = 59/182 (32%), Gaps = 9/182 (4%)
Query: 85 SPTTTTTTTSLGDFSDDVTAASSP----PSAAAAAARVRGRGSSVKQQGAASSFPGGGFE 140
S TT T S +++V P + A A + + + +
Sbjct: 1217 SETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLD 1276
Query: 141 VPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAER 200
P+ A + ++ + S S + D A+ + K R
Sbjct: 1277 SAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGR 1336
Query: 201 RAIQEAQRAAK--AAAKAEGIKTPAATALANA---KPTKSTRPSPQRNDSPVVVAASEKK 255
+ ++AAK AAAK G T + KP ++ SP++ + + KK
Sbjct: 1337 KPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKK 1396
Query: 256 GG 257
G
Sbjct: 1397 SG 1398
>gnl|CDD|236948 PRK11653, PRK11653, hypothetical protein; Provisional.
Length = 225
Score = 29.7 bits (67), Expect = 4.1
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 77 PSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRG 122
P A P TTTT + G F + V SS ++++++ R
Sbjct: 179 PKTAMAPKP--ATTTTITRGGFGESVAKQSSMQRSSSSSSGTSSRS 222
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 30.3 bits (68), Expect = 4.5
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHS--PSDAFPPP 84
PP + P S + +S+PGN L V P S P P + P+ PP
Sbjct: 189 PPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPV 248
Query: 85 SP 86
Sbjct: 249 IQ 250
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 29.8 bits (66), Expect = 4.7
Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 8/184 (4%)
Query: 83 PPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVP 142
S + D A + P+ A+ A G ++ ++ + P E P
Sbjct: 74 AASAAAAEEKEAAASTEPDKEPAEAEPAEPASPAEAEGEAATSTEKAEDGATPSPSSETP 133
Query: 143 PSVKA----PSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKA 198
K S SG + K +E G + E + A + P E S
Sbjct: 134 KKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKEEAAAAAP--EAGSGE 191
Query: 199 ERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGD 258
E A + A A A+ E + PAA A K +P++ + AA E+K +
Sbjct: 192 EAAA--PGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEE 249
Query: 259 RSVE 262
+ E
Sbjct: 250 KPAE 253
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 29.0 bits (65), Expect = 4.8
Identities = 18/61 (29%), Positives = 20/61 (32%)
Query: 27 PPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSP 86
P PP P P L P PP P L P LP P +A+P
Sbjct: 99 PFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLLPDLPLEAWPATDK 158
Query: 87 T 87
T
Sbjct: 159 T 159
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 30.1 bits (67), Expect = 5.1
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 19 GFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRH----PSSSLLPRLP 74
G F P + T + ++T +D SP ++P PP H P++ P
Sbjct: 560 GLFAGNPGSTNSTPTGSAASSNTTFSSD--SPSTVVAPSTSPPAGHLGSPPATPSKIVSP 617
Query: 75 H--SPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSV 125
P+ PS T ++ +S + AS+ ++ ++ +V SSV
Sbjct: 618 STSPPASHLGSPSTTPSSPESS-------IKVASTETASPESSIKVASTESSV 663
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 30.0 bits (67), Expect = 5.4
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 34 DPPDPIHSTPLADASSPGNFLSPVMIPPPRH----PSSSLLPRLPHSPSDAFP--PPSPT 87
DP D ++ +++ASSP LS ++ +S + P + P P +
Sbjct: 10 DPADNVNDV-VSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPLPPNTTL 68
Query: 88 TTTTTTSLGDFSDDVTAASSPPSA-AAAAARVRGR 121
+ S GD S +P S A + R R
Sbjct: 69 DAPVSDSQGDESSSEQQPQNPNSTEPAPPPKKRRR 103
>gnl|CDD|100029 cd02193, PurL, Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT) catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 272
Score = 29.2 bits (65), Expect = 6.2
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 161 VVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIK 220
++ G + G +++ S R L K + + E+ EA +A AA K
Sbjct: 135 LIGGGKGHNGLGGTALASVALSYRQLGDKSAQVRDPAQEKG-FYEAMQALVAAGKLLAWH 193
Query: 221 TPAATALANAKP 232
A L A
Sbjct: 194 DRGAGGLLVALA 205
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor
GTPase-activating protein AGD14; Provisional.
Length = 648
Score = 29.8 bits (66), Expect = 6.3
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 23 NAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFP 82
+AP D + S DP S D SP NF P+ S+ P + FP
Sbjct: 213 SAPRASDYSVSSAGDPFRS----DIQSP-NFQQEAEFRSPQFQHSNAPPS-----ENLFP 262
Query: 83 PPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASS 133
TT++ S+ + + S S A R ++ QQG S+
Sbjct: 263 GRQHQRTTSSGSVRSVDSNFMSIKSYTSGGLGEAVSESRQNTGSQQGKTSN 313
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.4 bits (66), Expect = 6.4
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 176 VSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKS 235
+ V+ + P+ S A + + ++K + + + T
Sbjct: 131 TNPNVKRRTGVGLPPVAPAASPALKPTANGKRPSSKPPKSIMSPE-VKVKSAKKTQDTSK 189
Query: 236 TRPSPQRNDSPVVVAASEKKGG 257
+ + V AAS K+
Sbjct: 190 ETTTEKTEGKTSVKAASLKRNP 211
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.5 bits (62), Expect = 6.5
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 181 QSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPT-KSTRPS 239
Q P ++ + E++ + + A A A +K + +
Sbjct: 31 QVAAVAAEAPAAQQEASTEKKPRATSAKTTAATAPTPPTAEVGAADAPESKAENSAPVQA 90
Query: 240 PQRN 243
Sbjct: 91 GDAG 94
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 29.1 bits (65), Expect = 6.6
Identities = 13/56 (23%), Positives = 18/56 (32%)
Query: 179 EVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTK 234
E+ + A S + A + A AK A + PAA A A
Sbjct: 100 EILASGADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAA 155
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 29.5 bits (66), Expect = 6.8
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 146 KAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQE 205
KA VPA V VK+ G S G + L S
Sbjct: 156 KASMEVPAPASGVVKSVKVKVGDSVPTGDLILT------------LSVAGSTPATAPAPA 203
Query: 206 AQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAA 251
+ + A + A + AA A A A+ + + + +N + V AA
Sbjct: 204 SAQPAAQSPAATQPEPAAAPAAAKAQA-PAPQQAGTQNPAKVDHAA 248
>gnl|CDD|234336 TIGR03734, PRTRC_parB, PRTRC system ParB family protein. A novel
genetic system characterized by six major proteins,
included a ParB homolog and a ThiF homolog, is
designated PRTRC, or ParB-Related,ThiF-Related Cassette.
It is often found on plasmids. This protein family the
member related to ParB, and is designated PRTRC system
ParB family protein.
Length = 554
Score = 29.3 bits (66), Expect = 6.8
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 197 KAERRAIQEAQRAAKAAAKAE-GIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEK 254
A ++A + A AA+ A G TPA T P + S +
Sbjct: 319 AARKKAERAAAAAAQKPAAPAAGPGTPAKEKSPAETATSGAA-KPAAKKAVPSSQPSNR 376
>gnl|CDD|233499 TIGR01631, Trypano_RHS, trypanosome RHS (retrotransposon hot spot)
family. This model describes full-length and
part-length members of the RHS (retrotransposon hot
spot) family in Trypanosoma brucei and Trypanosoma
cruzi. Members of this family are frequently interrupted
by non-LTR retrotransposons inserted at exactly the same
relative position.
Length = 760
Score = 29.4 bits (66), Expect = 6.9
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 391 CRPLSVSMGNAIRF-----LKSQIAKIPISLSESEAKATL--HSDIERFINEKIILADRV 443
CRP+S +GN I F ++ + A + S E A + + ++ R
Sbjct: 528 CRPVSAHIGNKILFKLAKIMQQKDANSLVLESTRELAAENFERCAVFALLFGNVV---RG 584
Query: 444 IVKH 447
I +
Sbjct: 585 IARR 588
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. Most
members of this family are EC 6.3.2.13,
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase. An exception is Staphylococcus
aureus, in which diaminopimelate is replaced by lysine
in the peptidoglycan and MurE is EC 6.3.2.7. The
Mycobacteria, part of the closest neighboring branch
outside of the low-GC Gram-positive bacteria, use
diaminopimelate. A close homolog, scoring just below the
trusted cutoff, is found (with introns) in Arabidopsis
thaliana. Its role is unknown [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 464
Score = 29.2 bits (66), Expect = 6.9
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 428 DIERFINEK---IILADRV-IVKHAVTKIRDGDVLLTYG 462
DI I+EK +I+ADR +++A++ + GDV+L G
Sbjct: 407 DILAGISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAG 445
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 29.3 bits (66), Expect = 6.9
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 205 EAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKD 264
A A K E AA A A S P+ +R + S G + +
Sbjct: 82 AAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVT-GRV 140
Query: 265 RKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVE 301
K+D+ + Q+ + K R E
Sbjct: 141 TKEDIIKKTEA---PASAQQPAPAAAAKAPANFTRPE 174
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.8 bits (65), Expect = 7.0
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 184 RALNSKPLKEKTSKAE-RRAIQEAQRAAKAAAKAEGI-----KTPA--ATALAN--AKPT 233
+ +N++P+K K ++A+ R+ ++ +R KA KAE I + A + K
Sbjct: 103 KEINARPIK-KVAEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAK 161
Query: 234 KSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPH------PRMQYDDKSRVQKLKK 287
K + + VVA K G++ R K V PRM+ D ++ +K KK
Sbjct: 162 KKKKKRKKT----YVVA----KKGNKGKAG-RPKGVKGKYKVVDPRMKKDLRALKRKAKK 212
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 29.4 bits (66), Expect = 7.3
Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 17 QVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHS 76
Q P Q PP P P P PPP++ + P LP
Sbjct: 239 QPPPLQQPQFPGLSQQMPPP---PPQPPQQQQQPP---QPQAQPPPQNQPTP-HPGLPQG 291
Query: 77 PSDAFPPPSP 86
+ PPP
Sbjct: 292 QNAPLPPPQQ 301
>gnl|CDD|234090 TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP.
Members of this protein family are found in type IV
pilus biogenesis loci and include proteins designated
PilP [Cell envelope, Surface structures].
Length = 119
Score = 27.8 bits (62), Expect = 7.9
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 77 PSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPG 136
+ PP + T T++ V A R+ G Q G S PG
Sbjct: 46 FTSGVPPMALTGANPTSAPAILLPRVVEIFGRGGRLTATLRLPGGREVDVQVG--DSLPG 103
Query: 137 GGFEV 141
G++V
Sbjct: 104 TGYKV 108
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 29.1 bits (65), Expect = 8.0
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 24 APLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPP 83
P P P P A +P PPP ++ P P +A PP
Sbjct: 46 PPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP--PPVDPNAPPP 103
Query: 84 PSPTTTTTTTSLGDFS 99
P+P ++G FS
Sbjct: 104 PAPEPGRIDNAVGGFS 119
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 28.9 bits (65), Expect = 9.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 198 AERRAIQEAQRAAKAAAKAEGIKTPAATAL-ANAKPTKSTRPSPQR 242
AERRA + K A KA K TA A AK T+ + ++
Sbjct: 253 AERRA--KGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 29.2 bits (66), Expect = 9.6
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 187 NSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP 240
K KEK SK+E A++ K G++T A+ +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGV 818
>gnl|CDD|222347 pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.
Length = 267
Score = 28.8 bits (65), Expect = 9.8
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 95 LGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPAS 154
L D D +++A AAAAR+ G + A + G G V ++P
Sbjct: 42 LSDIYDALSSALDNSDVDAAAARLAGALRDLDGDTAYAQA-GVGLAV--------AIPNQ 92
Query: 155 GLTTVSVVK 163
L+ K
Sbjct: 93 PLSMAFFAK 101
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 29.0 bits (65), Expect = 9.8
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 19/200 (9%)
Query: 61 PPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGD------------FSDDVTAASSP 108
P PS+ L S P+ + + S G S ++P
Sbjct: 16 PEATPSAGAPTGLQQSSE----SPTQRASHSLASEGKKNRKKMPKVFQKSSAPRQIQAAP 71
Query: 109 PSA--AAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPP 166
P A AAA RG ++++ A G S A + G+ + L
Sbjct: 72 PQALNPTAAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEMEDLAG 131
Query: 167 GISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATA 226
+ Q +S + SK E + + A +AA + +
Sbjct: 132 RPVVKPDADRQLR-QDILNKSSSSRRPPVSKEEGTSSKMPATALASAALFKDDEIRQEVD 190
Query: 227 LANAKPTKSTRPSPQRNDSP 246
A + +R S R + P
Sbjct: 191 AARSDQASQSRLSRSRGNPP 210
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 28.5 bits (64), Expect = 9.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 188 SKPLKEKTSKAERRAIQEAQRAAKA----AAKAEGIKTPAATALANAKPTKSTRPSPQ 241
+ L EK + E++A+ EA A A AAKA + A A A A + S
Sbjct: 207 ASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAALQAAATAAQPSAVTESAS 264
>gnl|CDD|176710 cd08362, BphC5-RrK37_N_like, N-terminal, non-catalytic, domain of
BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from
Rhodococcus rhodochrous K37, and similar proteins.
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes
the extradiol ring cleavage reaction of
2,3-dihydroxybiphenyl, the third step in the
polychlorinated biphenyls (PCBs) degradation pathway
(bph pathway). The enzyme contains a N-terminal and a
C-terminal domain of similar structure fold, resulting
from an ancient gene duplication. BphC belongs to the
type I extradiol dioxygenase family, which requires a
metal in the active site for its catalytic activity.
Polychlorinated biphenyl degrading bacteria demonstrate
multiplicity of BphCs. Bacterium Rhodococcus rhodochrous
K37 has eight genes encoding BphC enzymes. This family
includes the N-terminal domain of BphC5-RrK37. The
crystal structure of the protein from Novosphingobium
aromaticivorans has a Mn(II)in the active site, although
most proteins of type I extradiol dioxygenases are
activated by Fe(II).
Length = 120
Score = 27.7 bits (62), Expect = 9.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 104 AASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGF 139
+ +S A A +V RG +V + A+ PGGG+
Sbjct: 65 SVASRADVDALARQVAARGGTVLSEPGATDDPGGGY 100
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,150,489
Number of extensions: 3242892
Number of successful extensions: 5785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5096
Number of HSP's successfully gapped: 311
Length of query: 658
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 555
Effective length of database: 6,369,140
Effective search space: 3534872700
Effective search space used: 3534872700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)