BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006153
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F9I|A Chain A, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
pdb|2F9I|C Chain C, Crystal Structure Of The Carboxyltransferase Subunit Of
Acc From Staphylococcus Aureus
Length = 327
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 162/288 (56%)
Query: 7 LDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDR 66
+D ++I LE ++ K +YT+L P RV IAR RPT LD++ I + F+ELHGDR
Sbjct: 40 VDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDR 99
Query: 67 AGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHH 126
DDPA++ GIG ++GR +G Q+G++TK+NI RNFGM P GYRKALR+M A+
Sbjct: 100 NFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKF 159
Query: 127 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXXC 186
PI TFIDT GAY +EE GQ E+IA NL M LKVP
Sbjct: 160 NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGI 219
Query: 187 ANKLLMLENAVFYVASPEACAAILWXXXXXXXXXXXXXXITGSELCKLQIADGVIPEPLG 246
ANK+LMLEN+ + V SPE AA+LW IT ++ +L I D VI EPLG
Sbjct: 220 ANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLG 279
Query: 247 GAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQE 294
GAH D + IK A +D L + E+ R KFR IG + E
Sbjct: 280 GAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE 327
>pdb|2F9Y|A Chain A, The Crystal Structure Of The Carboxyltransferase Subunit
Of Acc From Escherichia Coli
Length = 339
Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 156/284 (54%)
Query: 7 LDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDR 66
++ +++ L K + + ++ L Q +ARHP RP LD+V ++F EL GDR
Sbjct: 54 INIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDR 113
Query: 67 AGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHH 126
A DD AIV GI +DGR M +GHQKGR TKE I+RNFGMP P GYRKALR+M A+
Sbjct: 114 AYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERF 173
Query: 127 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXXC 186
PI+TFIDTPGAY + +EE GQ EAIA NLR M L VP
Sbjct: 174 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGV 233
Query: 187 ANKLLMLENAVFYVASPEACAAILWXXXXXXXXXXXXXXITGSELCKLQIADGVIPEPLG 246
+K+ ML+ + + V SPE CA+ILW I L +L++ D +IPEPLG
Sbjct: 234 GDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPEPLG 293
Query: 247 GAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIG 290
GAH +P + +K + + +L + T++L R + G
Sbjct: 294 GAHRNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYG 337
>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
Subunit (tm0716) From Thermotoga Maritima At 2.30 A
Resolution
Length = 527
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 115 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF 162
KA R + + D PI+TF+DTPG + E G I H + ++
Sbjct: 353 KAARFIRFLDAFNIPILTFVDTPGYLPGVAQE---HGGIIRHGAKLLY 397
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 65 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 122
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 123 ADHHGFP 129
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 43 PNRPTFLDHVFN--ITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKEN 100
PN+P + V + ++F+E+ +AGY IV G G +DGR + +Q
Sbjct: 308 PNQPYDMHEVITRLLDDEFLEI---QAGYAQ-NIVVGFGRIDGRPVGIVANQPTHFA--- 360
Query: 101 IQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138
G + KA R + D PIV +D PG
Sbjct: 361 -----GCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 393
>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
Mycobacterium Tuberculosis
Length = 548
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 39 IARHPNRPTFLDHVFN--ITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRN 96
I PN+P + V + ++F+E+ +AGY IV G G +DGR + +Q
Sbjct: 304 IPDSPNQPYDMHEVITRLLDDEFLEI---QAGYAQ-NIVVGFGRIDGRPVGIVANQPTHF 359
Query: 97 TKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138
G + KA R + D PIV +D PG
Sbjct: 360 A--------GCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 393
>pdb|3IB9|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422l
pdb|3IB9|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422l
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|1XNW|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
pdb|1XNW|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #2, Mutant D422i
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3MFM|C Chain C, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|F Chain F, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|A Chain A, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|B Chain B, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|D Chain D, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
pdb|3MFM|E Chain E, Crystal Structures And Mutational Analyses Of Acyl-Coa
Carboxylase Subunit Of Streptomyces Coelicolor
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3IAV|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422v
pdb|3IAV|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422v
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|1XNV|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNV|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #1
pdb|1XNY|A Chain A, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XNY|B Chain B, Biotin And Propionyl-coa Bound To Acyl-coa Carboxylase
Beta Subunit From S. Coelicolor (pccb)
pdb|1XO6|A Chain A, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|B Chain B, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|C Chain C, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|D Chain D, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|E Chain E, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
pdb|1XO6|F Chain F, Acyl-Coa Carboxylase Beta Subunit From S. Coelicolor
(Pccb), Apo Form #3
Length = 530
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|3IBB|A Chain A, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|B Chain B, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|C Chain C, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|D Chain D, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|E Chain E, Propionyl-Coa Carboxylase Beta Subunit, D422a
pdb|3IBB|F Chain F, Propionyl-Coa Carboxylase Beta Subunit, D422a
Length = 530
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 72 PAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIV 131
P I+TG G ++GR + +Q + G KA R + D P++
Sbjct: 320 PNILTGFGRVEGRPVGIVANQP--------MQFAGCLDITASEKAARFVRTCDAFNVPVL 371
Query: 132 TFIDTPGAYADLKSEELG 149
TF+D PG + E G
Sbjct: 372 TFVDVPGFLPGVDQEHDG 389
>pdb|1TYE|A Chain A, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|C Chain C, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
pdb|1TYE|E Chain E, Structural Basis For Allostery In Integrins And Binding Of
Ligand- Mimetic Therapeutics To The Platelet Receptor
For Fibrinogen
Length = 452
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 65 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 122
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 123 ADHHGFP 129
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|3FCU|A Chain A, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|C Chain C, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3FCU|E Chain E, Structure Of Headpiece Of Integrin Aiibb3 In Open
Conformation
pdb|3NID|A Chain A, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NID|C Chain C, The Closed Headpiece Of Integrin Alphaiib Beta3 And Its
Complex With An Alpahiib Beta3 -Specific Antagonist That
Does Not Induce Opening
pdb|3NIF|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIF|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|A Chain A, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3NIG|C Chain C, The Closed Headpiece Of Integrin Iib 3 And Its Complex
With An Iib 3 - Specific Antagonist That Does Not Induce
Opening
pdb|3T3M|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|A Chain A, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|C Chain C, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 457
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 65 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 122
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 123 ADHHGFP 129
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 574 GKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPG 624
G +PDV I+A++ S + EL+E +E++AE D K PG
Sbjct: 235 GMEPDVIGARVIEAMKANRLHIFSHPDHKEELREVFDEIIAEYQDYPKDPG 285
>pdb|2VC2|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist L-739758
pdb|2VDK|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDL|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece
pdb|2VDM|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Tirofiban
pdb|2VDN|A Chain A, Re-Refinement Of Integrin Alphaiibbeta3 Headpiece Bound To
Antagonist Eptifibatide
pdb|2VDO|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide, Hhlggakqagdv
pdb|2VDP|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To Fibrinogen Gamma
Chain Peptide,Lggakqagdv
pdb|2VDQ|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Hhlggakqrgdv
pdb|2VDR|A Chain A, Integrin Alphaiibbeta3 Headpiece Bound To A Chimeric
Fibrinogen Gamma Chain Peptide, Lggakqrgdv
Length = 452
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 65 DRAGYDDPAIVTGIGSMDGR--TYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY 122
DR GY+D A+ G GR +F+G +G ++ + + PT + +LR
Sbjct: 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVD 426
Query: 123 ADHHGFP 129
D +G+P
Sbjct: 427 IDDNGYP 433
>pdb|3N6R|B Chain B, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|D Chain D, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|F Chain F, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|H Chain H, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|J Chain J, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|L Chain L, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 531
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 114 RKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMF 162
RKA R + + D P++T ID PG E G I H + ++
Sbjct: 360 RKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQE---YGGVIKHGAKLLY 405
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 426 DMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL-QDSGASSFS 484
D + NA+ + + +++K +N + V D+KE +EAIK Q AS F
Sbjct: 387 DFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFD 446
Query: 485 DLEDDLK 491
DL+ D +
Sbjct: 447 DLKKDWQ 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,066,145
Number of Sequences: 62578
Number of extensions: 652606
Number of successful extensions: 1671
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 58
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)