Query 006153
Match_columns 658
No_of_seqs 279 out of 2066
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03229 acetyl-coenzyme A car 100.0 2E-161 4E-166 1344.9 67.5 646 2-650 117-762 (762)
2 PLN03230 acetyl-coenzyme A car 100.0 4.5E-77 9.8E-82 636.8 35.6 312 2-313 96-407 (431)
3 COG0825 AccA Acetyl-CoA carbox 100.0 9.3E-77 2E-81 605.9 25.0 293 2-294 25-317 (317)
4 CHL00198 accA acetyl-CoA carbo 100.0 8.6E-72 1.9E-76 584.2 33.1 292 2-293 29-320 (322)
5 PRK05724 acetyl-CoA carboxylas 100.0 2E-70 4.3E-75 574.3 33.4 293 2-294 26-318 (319)
6 TIGR00513 accA acetyl-CoA carb 100.0 1.1E-69 2.5E-74 567.9 34.5 291 2-292 26-316 (316)
7 PRK12319 acetyl-CoA carboxylas 100.0 2E-57 4.4E-62 465.6 30.7 254 32-289 3-256 (256)
8 PLN03229 acetyl-coenzyme A car 100.0 1.1E-51 2.3E-56 463.1 30.1 251 364-627 424-693 (762)
9 TIGR01117 mmdA methylmalonyl-C 100.0 2.7E-36 5.9E-41 335.9 24.9 208 38-266 270-495 (512)
10 COG4799 Acetyl-CoA carboxylase 100.0 2.3E-36 4.9E-41 332.8 18.6 212 37-269 278-511 (526)
11 PF01039 Carboxyl_trans: Carbo 100.0 3.6E-36 7.9E-41 333.9 17.8 211 38-269 249-481 (493)
12 TIGR03134 malonate_gamma malon 100.0 2E-35 4.4E-40 300.5 20.7 181 48-245 2-191 (238)
13 PLN02820 3-methylcrotonyl-CoA 100.0 1.2E-34 2.6E-39 325.3 24.7 203 38-266 326-554 (569)
14 PRK05654 acetyl-CoA carboxylas 100.0 6.5E-32 1.4E-36 282.1 24.3 205 38-266 50-280 (292)
15 TIGR00515 accD acetyl-CoA carb 100.0 1.2E-31 2.6E-36 279.1 24.3 205 38-266 49-279 (285)
16 KOG0540 3-Methylcrotonyl-CoA c 100.0 2.7E-32 5.8E-37 291.6 15.9 208 38-268 304-523 (536)
17 PF03255 ACCA: Acetyl co-enzym 100.0 1E-31 2.2E-36 252.5 7.4 123 2-124 23-145 (145)
18 CHL00174 accD acetyl-CoA carbo 100.0 2.1E-28 4.6E-33 254.9 24.3 189 38-241 61-277 (296)
19 TIGR03133 malonate_beta malona 100.0 3.4E-27 7.3E-32 244.5 24.0 206 43-264 3-231 (274)
20 PRK07189 malonate decarboxylas 100.0 3.8E-27 8.2E-32 246.6 21.4 208 41-264 10-240 (301)
21 PLN02820 3-methylcrotonyl-CoA 100.0 8.2E-27 1.8E-31 262.3 24.5 176 28-211 64-252 (569)
22 COG0777 AccD Acetyl-CoA carbox 99.9 2.8E-26 6E-31 234.2 20.5 213 34-274 47-285 (294)
23 TIGR01117 mmdA methylmalonyl-C 99.9 3.6E-25 7.7E-30 247.1 23.2 193 29-242 14-227 (512)
24 COG4799 Acetyl-CoA carboxylase 99.9 1.3E-24 2.8E-29 240.1 16.6 172 32-212 29-211 (526)
25 PF01039 Carboxyl_trans: Carbo 99.9 2.6E-23 5.7E-28 231.4 19.3 186 43-242 5-204 (493)
26 KOG0540 3-Methylcrotonyl-CoA c 99.8 9.2E-20 2E-24 196.0 11.0 188 31-252 48-250 (536)
27 PF06833 MdcE: Malonate decarb 99.8 1.1E-18 2.3E-23 176.9 14.3 162 71-243 16-187 (234)
28 KOG0016 Enoyl-CoA hydratase/is 99.4 1.9E-12 4.2E-17 132.6 12.7 163 104-279 28-218 (266)
29 PRK06023 enoyl-CoA hydratase; 99.3 8.5E-11 1.8E-15 120.4 17.8 163 104-279 26-208 (251)
30 PF00378 ECH: Enoyl-CoA hydrat 99.3 3.8E-11 8.2E-16 121.8 14.5 176 81-278 4-200 (245)
31 PRK08150 enoyl-CoA hydratase; 99.3 1.4E-10 3E-15 119.3 18.3 161 104-278 22-202 (255)
32 TIGR02280 PaaB1 phenylacetate 99.3 1.3E-10 2.8E-15 119.3 17.9 162 104-278 19-203 (256)
33 PRK08140 enoyl-CoA hydratase; 99.3 1.3E-10 2.8E-15 119.5 17.6 163 104-279 24-210 (262)
34 KOG0368 Acetyl-CoA carboxylase 99.3 2.6E-12 5.6E-17 152.1 5.0 182 28-214 1783-1999(2196)
35 PRK06142 enoyl-CoA hydratase; 99.3 2.4E-10 5.2E-15 118.3 18.4 165 104-280 26-222 (272)
36 PRK09120 p-hydroxycinnamoyl Co 99.3 1.7E-10 3.7E-15 120.0 17.1 163 104-279 28-215 (275)
37 PLN02664 enoyl-CoA hydratase/d 99.3 2.5E-10 5.5E-15 118.5 18.2 163 104-278 28-222 (275)
38 PRK05862 enoyl-CoA hydratase; 99.2 3.3E-10 7.2E-15 116.4 18.0 163 104-279 24-205 (257)
39 PRK06563 enoyl-CoA hydratase; 99.2 2.9E-10 6.3E-15 116.7 17.4 162 104-278 19-202 (255)
40 PRK05995 enoyl-CoA hydratase; 99.2 3.3E-10 7.3E-15 116.5 17.8 162 104-279 24-209 (262)
41 PRK07260 enoyl-CoA hydratase; 99.2 4.2E-10 9.1E-15 115.5 18.4 166 104-282 22-212 (255)
42 PRK09674 enoyl-CoA hydratase-i 99.2 3.3E-10 7.2E-15 116.3 17.6 163 104-279 22-203 (255)
43 PRK06143 enoyl-CoA hydratase; 99.2 3.2E-10 7E-15 116.7 17.5 164 104-281 27-212 (256)
44 PRK07511 enoyl-CoA hydratase; 99.2 4.9E-10 1.1E-14 115.2 18.9 162 104-278 23-208 (260)
45 PRK05869 enoyl-CoA hydratase; 99.2 3.9E-10 8.4E-15 114.0 17.7 163 106-281 29-212 (222)
46 PRK08258 enoyl-CoA hydratase; 99.2 4.3E-10 9.3E-15 117.0 18.2 163 104-279 37-225 (277)
47 PRK05981 enoyl-CoA hydratase; 99.2 3.8E-10 8.1E-15 116.4 17.6 164 104-280 24-215 (266)
48 PRK07327 enoyl-CoA hydratase; 99.2 3.6E-10 7.8E-15 117.0 17.4 162 105-279 33-217 (268)
49 TIGR03210 badI 2-ketocyclohexa 99.2 4.1E-10 8.9E-15 115.9 17.7 164 104-280 22-206 (256)
50 PRK07468 enoyl-CoA hydratase; 99.2 4.2E-10 9.1E-15 116.0 17.7 162 104-279 25-210 (262)
51 PRK11423 methylmalonyl-CoA dec 99.2 3E-10 6.6E-15 117.2 16.5 175 82-278 11-206 (261)
52 PRK05674 gamma-carboxygeranoyl 99.2 4.6E-10 9.9E-15 116.1 17.8 162 104-279 26-211 (265)
53 PRK09076 enoyl-CoA hydratase; 99.2 4.7E-10 1E-14 115.4 17.6 161 106-279 24-206 (258)
54 PRK06688 enoyl-CoA hydratase; 99.2 4.5E-10 9.7E-15 115.2 17.0 162 104-278 25-206 (259)
55 PRK07657 enoyl-CoA hydratase; 99.2 4.4E-10 9.4E-15 115.7 17.0 164 104-280 24-209 (260)
56 PRK09245 enoyl-CoA hydratase; 99.2 4.2E-10 9.1E-15 116.1 16.7 164 104-280 23-215 (266)
57 PRK06127 enoyl-CoA hydratase; 99.2 5.8E-10 1.3E-14 115.5 17.6 164 104-280 31-218 (269)
58 PRK06190 enoyl-CoA hydratase; 99.2 8.2E-10 1.8E-14 114.1 18.2 162 104-278 24-204 (258)
59 PRK05980 enoyl-CoA hydratase; 99.2 6.6E-10 1.4E-14 114.2 17.4 163 104-279 23-211 (260)
60 PRK05809 3-hydroxybutyryl-CoA 99.2 6.5E-10 1.4E-14 114.3 17.4 162 104-278 24-207 (260)
61 PRK07659 enoyl-CoA hydratase; 99.2 4.4E-10 9.6E-15 115.8 16.1 162 104-279 26-208 (260)
62 PRK08252 enoyl-CoA hydratase; 99.2 9E-10 2E-14 113.1 18.3 163 104-279 23-202 (254)
63 PRK07110 polyketide biosynthes 99.2 7.7E-10 1.7E-14 113.4 17.5 163 104-279 25-205 (249)
64 PRK03580 carnitinyl-CoA dehydr 99.2 7.2E-10 1.6E-14 114.2 17.4 160 106-278 24-204 (261)
65 PLN02600 enoyl-CoA hydratase 99.2 8.9E-10 1.9E-14 113.1 17.9 162 104-278 15-198 (251)
66 PRK08138 enoyl-CoA hydratase; 99.2 7.1E-10 1.5E-14 114.3 16.9 140 104-243 28-186 (261)
67 TIGR01929 menB naphthoate synt 99.2 5.9E-10 1.3E-14 114.9 16.3 163 104-279 23-208 (259)
68 PRK07854 enoyl-CoA hydratase; 99.2 8.9E-10 1.9E-14 112.7 17.4 138 104-241 20-172 (243)
69 PRK07658 enoyl-CoA hydratase; 99.2 8.6E-10 1.9E-14 113.1 16.8 160 106-278 23-204 (257)
70 PRK08260 enoyl-CoA hydratase; 99.2 1.2E-09 2.6E-14 114.8 18.1 139 104-242 24-200 (296)
71 PRK08139 enoyl-CoA hydratase; 99.2 1.2E-09 2.6E-14 113.1 17.8 163 104-280 31-215 (266)
72 PRK06144 enoyl-CoA hydratase; 99.2 1.2E-09 2.6E-14 112.8 17.7 164 104-280 28-215 (262)
73 PRK06213 enoyl-CoA hydratase; 99.2 1.8E-09 4E-14 109.1 18.6 159 106-279 24-203 (229)
74 PRK06494 enoyl-CoA hydratase; 99.2 1.6E-09 3.6E-14 111.5 18.4 161 105-279 25-205 (259)
75 PRK05864 enoyl-CoA hydratase; 99.2 1.6E-09 3.4E-14 112.7 18.3 163 104-279 30-221 (276)
76 PRK08259 enoyl-CoA hydratase; 99.1 1.2E-09 2.5E-14 112.5 16.7 164 104-280 23-205 (254)
77 PRK07799 enoyl-CoA hydratase; 99.1 1.6E-09 3.4E-14 111.8 17.7 162 104-278 25-210 (263)
78 PRK07396 dihydroxynaphthoic ac 99.1 1.5E-09 3.3E-14 112.7 17.3 163 104-279 33-218 (273)
79 TIGR03189 dienoyl_CoA_hyt cycl 99.1 2.2E-09 4.9E-14 110.3 17.7 159 106-279 22-198 (251)
80 PRK06495 enoyl-CoA hydratase; 99.1 2.4E-09 5.1E-14 110.2 17.8 163 106-282 25-208 (257)
81 PLN02888 enoyl-CoA hydratase 99.1 2E-09 4.3E-14 111.5 17.2 161 104-277 30-208 (265)
82 PRK07509 enoyl-CoA hydratase; 99.1 2.1E-09 4.6E-14 110.5 17.0 163 104-281 23-213 (262)
83 PRK08272 enoyl-CoA hydratase; 99.1 2.3E-09 5.1E-14 112.9 17.6 162 104-282 30-238 (302)
84 PRK05870 enoyl-CoA hydratase; 99.1 1.3E-09 2.8E-14 111.7 15.3 162 104-280 23-205 (249)
85 PRK08321 naphthoate synthase; 99.1 2.5E-09 5.5E-14 112.9 17.5 162 104-278 45-246 (302)
86 PRK06210 enoyl-CoA hydratase; 99.1 2.2E-09 4.8E-14 111.1 16.8 162 104-278 26-219 (272)
87 PRK07112 polyketide biosynthes 99.1 3.7E-09 7.9E-14 108.8 18.3 158 104-278 24-203 (255)
88 PLN03214 probable enoyl-CoA hy 99.1 3.8E-09 8.3E-14 110.3 18.5 160 106-278 33-218 (278)
89 cd07020 Clp_protease_NfeD_1 No 99.1 5.1E-10 1.1E-14 110.3 10.6 127 106-242 8-164 (187)
90 PRK07827 enoyl-CoA hydratase; 99.1 3.4E-09 7.3E-14 109.1 16.9 161 104-280 26-210 (260)
91 PLN02921 naphthoate synthase 99.1 3.1E-09 6.6E-14 113.7 16.9 162 104-278 87-271 (327)
92 COG1024 CaiD Enoyl-CoA hydrata 99.1 7.3E-09 1.6E-13 106.4 17.8 139 105-243 26-186 (257)
93 PRK07938 enoyl-CoA hydratase; 99.0 6.6E-09 1.4E-13 106.7 17.3 160 106-279 23-202 (249)
94 PRK08788 enoyl-CoA hydratase; 99.0 8.9E-09 1.9E-13 108.4 18.3 139 105-243 37-209 (287)
95 PRK08290 enoyl-CoA hydratase; 99.0 6.2E-09 1.4E-13 109.2 16.5 162 104-278 24-226 (288)
96 cd06558 crotonase-like Crotona 99.0 8.7E-09 1.9E-13 100.2 16.2 139 104-242 19-180 (195)
97 PRK06072 enoyl-CoA hydratase; 99.0 1.6E-08 3.4E-13 103.8 17.7 135 104-239 20-172 (248)
98 PRK05617 3-hydroxyisobutyryl-C 99.0 5.4E-09 1.2E-13 112.3 14.5 152 82-243 10-187 (342)
99 PRK12478 enoyl-CoA hydratase; 99.0 1E-08 2.2E-13 108.2 15.7 174 81-278 11-219 (298)
100 PLN02267 enoyl-CoA hydratase/i 99.0 5.9E-08 1.3E-12 99.3 19.7 136 106-242 21-183 (239)
101 KOG1680 Enoyl-CoA hydratase [L 98.9 7.1E-09 1.5E-13 107.7 12.7 153 84-244 45-216 (290)
102 PLN02157 3-hydroxyisobutyryl-C 98.9 4.8E-08 1E-12 107.3 17.8 160 71-243 36-220 (401)
103 TIGR03200 dearomat_oah 6-oxocy 98.9 4E-08 8.7E-13 106.2 16.3 148 105-252 49-223 (360)
104 PLN02874 3-hydroxyisobutyryl-C 98.9 6.4E-08 1.4E-12 105.6 17.4 152 82-243 18-192 (379)
105 cd07021 Clp_protease_NfeD_like 98.9 1.8E-08 3.9E-13 99.4 11.7 89 105-203 7-96 (178)
106 cd07014 S49_SppA Signal peptid 98.8 5.9E-08 1.3E-12 94.6 14.5 127 108-241 19-167 (177)
107 PLN02851 3-hydroxyisobutyryl-C 98.8 1.5E-07 3.3E-12 103.6 18.2 168 104-286 62-253 (407)
108 PRK11730 fadB multifunctional 98.8 9E-08 1.9E-12 112.0 16.6 140 104-243 27-190 (715)
109 cd07015 Clp_protease_NfeD Nodu 98.8 4.5E-08 9.6E-13 96.3 11.9 127 106-242 8-164 (172)
110 PLN02988 3-hydroxyisobutyryl-C 98.8 1.5E-07 3.2E-12 102.9 17.1 152 82-243 16-192 (381)
111 cd07016 S14_ClpP_1 Caseinolyti 98.8 2.4E-08 5.3E-13 95.5 8.7 88 106-204 7-97 (160)
112 PRK08184 benzoyl-CoA-dihydrodi 98.7 2E-07 4.4E-12 106.1 14.8 159 106-277 297-490 (550)
113 TIGR02441 fa_ox_alpha_mit fatt 98.7 7.1E-07 1.5E-11 104.9 18.2 139 105-243 35-198 (737)
114 TIGR03222 benzo_boxC benzoyl-C 98.6 4.8E-07 1.1E-11 103.0 16.1 160 106-278 293-487 (546)
115 TIGR03222 benzo_boxC benzoyl-C 98.6 9.3E-07 2E-11 100.7 17.0 139 104-242 41-211 (546)
116 TIGR02437 FadB fatty oxidation 98.6 1E-06 2.2E-11 103.3 17.5 140 104-243 27-190 (714)
117 TIGR02440 FadJ fatty oxidation 98.6 9.9E-07 2.1E-11 103.2 16.4 139 105-243 23-186 (699)
118 PRK11154 fadJ multifunctional 98.6 1.5E-06 3.2E-11 101.9 17.7 139 104-242 27-190 (708)
119 cd00394 Clp_protease_like Case 98.6 6.6E-07 1.4E-11 85.3 11.7 91 104-204 4-96 (161)
120 PRK08184 benzoyl-CoA-dihydrodi 98.5 1.6E-06 3.4E-11 99.0 16.6 138 105-242 46-215 (550)
121 COG0447 MenB Dihydroxynaphthoi 98.4 1.3E-06 2.9E-11 88.4 9.2 165 105-286 40-231 (282)
122 PRK12553 ATP-dependent Clp pro 98.4 2.3E-06 5E-11 86.3 10.9 134 99-242 35-201 (207)
123 PRK00277 clpP ATP-dependent Cl 98.3 4.2E-06 9.1E-11 84.0 11.6 134 99-242 31-195 (200)
124 cd07022 S49_Sppa_36K_type Sign 98.3 1.1E-05 2.3E-10 81.4 13.5 87 106-200 20-108 (214)
125 cd07013 S14_ClpP Caseinolytic 98.2 1.2E-05 2.5E-10 78.1 12.1 91 103-203 4-98 (162)
126 PRK14512 ATP-dependent Clp pro 98.2 1.3E-05 2.8E-10 80.5 12.5 133 100-242 24-187 (197)
127 TIGR00706 SppA_dom signal pept 98.2 1.3E-05 2.9E-10 80.4 11.8 81 112-200 14-96 (207)
128 cd07018 S49_SppA_67K_type Sign 98.2 1.2E-05 2.7E-10 81.4 11.3 91 105-203 23-115 (222)
129 CHL00028 clpP ATP-dependent Cl 98.1 2.2E-05 4.8E-10 79.1 11.8 135 98-242 29-195 (200)
130 PF00574 CLP_protease: Clp pro 98.1 1.5E-05 3.3E-10 77.8 9.6 92 99-200 16-111 (182)
131 cd07017 S14_ClpP_2 Caseinolyti 98.1 1.2E-05 2.6E-10 78.4 8.7 96 99-204 9-108 (171)
132 TIGR00493 clpP ATP-dependent C 98.1 3E-05 6.5E-10 77.4 11.6 133 99-241 26-189 (191)
133 cd07023 S49_Sppa_N_C Signal pe 98.1 1E-05 2.2E-10 80.9 8.2 88 110-204 16-105 (208)
134 PRK14514 ATP-dependent Clp pro 98.1 2.4E-05 5.2E-10 80.0 10.5 136 97-242 52-218 (221)
135 PRK12551 ATP-dependent Clp pro 98.0 3E-05 6.5E-10 77.9 10.6 135 98-242 24-189 (196)
136 COG1030 NfeD Membrane-bound se 98.0 3.1E-05 6.8E-10 85.5 10.8 126 106-241 35-186 (436)
137 PRK14513 ATP-dependent Clp pro 97.9 6E-05 1.3E-09 76.1 10.2 136 98-243 26-192 (201)
138 TIGR00705 SppA_67K signal pept 97.9 0.00011 2.3E-09 84.8 13.2 80 112-198 330-411 (584)
139 cd07019 S49_SppA_1 Signal pept 97.9 4.5E-05 9.7E-10 76.8 9.0 86 111-203 21-108 (211)
140 KOG1682 Enoyl-CoA isomerase [L 97.8 0.00019 4.1E-09 72.5 11.3 148 82-244 40-213 (287)
141 PF01972 SDH_sah: Serine dehyd 97.6 0.00026 5.7E-09 74.4 10.2 88 106-204 70-157 (285)
142 COG0616 SppA Periplasmic serin 97.6 0.00016 3.5E-09 77.5 8.7 90 107-205 79-168 (317)
143 COG0740 ClpP Protease subunit 97.6 0.00044 9.5E-09 69.9 10.0 135 99-243 27-192 (200)
144 PRK12552 ATP-dependent Clp pro 97.5 0.00037 8.1E-09 71.5 9.3 141 99-242 30-213 (222)
145 PRK11778 putative inner membra 97.4 0.00082 1.8E-08 72.7 9.6 77 120-204 117-193 (330)
146 KOG1681 Enoyl-CoA isomerase [L 97.4 0.00062 1.3E-08 70.0 8.2 148 86-242 33-214 (292)
147 KOG0840 ATP-dependent Clp prot 97.2 0.0013 2.9E-08 68.4 8.7 137 98-244 91-258 (275)
148 KOG0368 Acetyl-CoA carboxylase 97.2 0.0015 3.2E-08 80.2 10.1 154 49-213 1503-1731(2196)
149 PRK10949 protease 4; Provision 96.7 0.0082 1.8E-07 70.0 10.3 84 112-202 348-433 (618)
150 KOG1679 Enoyl-CoA hydratase [L 96.3 0.0086 1.9E-07 61.3 6.5 140 104-244 51-213 (291)
151 KOG1684 Enoyl-CoA hydratase [L 96.2 0.2 4.4E-06 54.9 16.4 179 84-287 47-252 (401)
152 PF01343 Peptidase_S49: Peptid 96.0 0.0085 1.8E-07 57.6 4.5 38 163-200 4-41 (154)
153 TIGR00705 SppA_67K signal pept 95.2 0.19 4.1E-06 58.5 12.6 83 110-200 75-160 (584)
154 PRK10949 protease 4; Provision 94.6 0.52 1.1E-05 55.3 14.2 83 110-200 94-179 (618)
155 PF06160 EzrA: Septation ring 94.0 14 0.0003 43.1 23.9 211 350-612 119-332 (560)
156 PRK01156 chromosome segregatio 93.5 11 0.00023 45.9 22.8 15 321-335 194-208 (895)
157 PF07798 DUF1640: Protein of u 93.0 0.58 1.3E-05 46.3 9.3 74 489-573 84-157 (177)
158 PRK03918 chromosome segregatio 92.7 13 0.00028 44.9 21.8 25 372-396 424-448 (880)
159 PRK04778 septation ring format 91.3 24 0.00052 41.1 21.1 94 318-412 166-269 (569)
160 PRK04778 septation ring format 90.4 42 0.00091 39.2 25.8 134 361-505 134-269 (569)
161 PF07888 CALCOCO1: Calcium bin 89.9 20 0.00042 41.9 18.3 14 603-616 441-454 (546)
162 PF10498 IFT57: Intra-flagella 89.6 5.7 0.00012 44.0 13.4 112 446-594 227-346 (359)
163 PRK01156 chromosome segregatio 89.1 18 0.00039 44.0 18.5 9 605-613 435-443 (895)
164 KOG0996 Structural maintenance 89.0 72 0.0016 40.4 22.8 66 320-385 830-903 (1293)
165 TIGR02169 SMC_prok_A chromosom 89.0 19 0.00042 44.3 18.9 15 321-335 678-692 (1164)
166 TIGR00606 rad50 rad50. This fa 88.7 15 0.00032 47.1 17.8 126 398-528 300-433 (1311)
167 COG1196 Smc Chromosome segrega 88.5 32 0.00069 43.6 20.5 22 318-339 194-215 (1163)
168 PF00038 Filament: Intermediat 88.3 31 0.00068 36.5 17.6 63 438-506 120-183 (312)
169 PRK03918 chromosome segregatio 88.1 49 0.0011 40.0 21.1 30 464-494 424-453 (880)
170 TIGR00606 rad50 rad50. This fa 87.0 82 0.0018 40.6 23.0 130 407-553 519-655 (1311)
171 TIGR03185 DNA_S_dndD DNA sulfu 86.7 41 0.00089 39.8 18.9 22 342-363 292-313 (650)
172 KOG4643 Uncharacterized coiled 86.0 26 0.00057 43.4 16.6 89 397-500 182-272 (1195)
173 PF07798 DUF1640: Protein of u 85.6 16 0.00034 36.3 12.6 73 534-618 84-156 (177)
174 smart00787 Spc7 Spc7 kinetocho 85.4 25 0.00055 38.2 15.1 160 421-616 115-287 (312)
175 PF07464 ApoLp-III: Apolipopho 83.8 3.5 7.6E-05 40.6 7.0 90 441-556 44-136 (155)
176 PF08317 Spc7: Spc7 kinetochor 82.2 66 0.0014 34.9 16.7 72 420-502 119-194 (325)
177 PF15450 DUF4631: Domain of un 82.0 25 0.00053 40.8 13.6 152 396-572 305-466 (531)
178 KOG0996 Structural maintenance 80.7 18 0.00039 45.3 12.7 77 395-478 816-897 (1293)
179 COG1196 Smc Chromosome segrega 80.3 44 0.00096 42.3 16.5 49 398-450 199-247 (1163)
180 PLN02939 transferase, transfer 80.1 22 0.00049 44.1 13.3 99 464-575 298-404 (977)
181 KOG2150 CCR4-NOT transcription 79.9 12 0.00026 43.5 10.5 14 445-458 4-17 (575)
182 PHA02562 46 endonuclease subun 79.3 1.2E+02 0.0027 34.6 20.5 15 321-335 178-192 (562)
183 KOG0977 Nuclear envelope prote 79.0 32 0.0007 40.2 13.5 36 463-498 246-281 (546)
184 KOG0971 Microtubule-associated 78.9 33 0.00071 42.2 13.7 54 418-476 257-310 (1243)
185 PF06160 EzrA: Septation ring 78.8 75 0.0016 37.2 16.7 109 318-430 246-358 (560)
186 TIGR03185 DNA_S_dndD DNA sulfu 78.2 1.5E+02 0.0033 35.1 27.6 27 260-286 168-194 (650)
187 KOG4674 Uncharacterized conser 78.0 65 0.0014 42.6 16.8 153 342-529 1145-1300(1822)
188 KOG0976 Rho/Rac1-interacting s 77.6 53 0.0012 40.0 14.7 134 447-595 352-509 (1265)
189 PRK02224 chromosome segregatio 77.2 1.8E+02 0.0039 35.4 22.3 8 166-173 67-74 (880)
190 PF12128 DUF3584: Protein of u 76.1 2.4E+02 0.0052 36.2 22.2 25 69-93 65-89 (1201)
191 PF09731 Mitofilin: Mitochondr 76.0 82 0.0018 36.6 16.0 43 584-628 452-494 (582)
192 PF12128 DUF3584: Protein of u 75.9 1.6E+02 0.0036 37.6 19.7 22 318-339 601-622 (1201)
193 KOG0994 Extracellular matrix g 75.3 1.6E+02 0.0035 37.6 18.2 24 580-603 1686-1709(1758)
194 KOG3215 Uncharacterized conser 74.3 42 0.00092 34.7 11.3 109 488-616 36-159 (222)
195 PF10498 IFT57: Intra-flagella 74.3 42 0.00091 37.3 12.4 160 309-502 183-345 (359)
196 KOG0972 Huntingtin interacting 73.8 15 0.00033 39.7 8.5 80 509-593 268-352 (384)
197 PF13514 AAA_27: AAA domain 73.8 2.6E+02 0.0056 35.5 20.9 224 385-618 144-385 (1111)
198 PF09731 Mitofilin: Mitochondr 73.7 1.6E+02 0.0035 34.3 17.6 151 420-595 330-485 (582)
199 KOG0250 DNA repair protein RAD 73.6 2.5E+02 0.0054 35.6 19.5 19 321-339 232-250 (1074)
200 PRK09039 hypothetical protein; 72.8 1.6E+02 0.0034 32.5 17.3 15 321-335 50-64 (343)
201 KOG0976 Rho/Rac1-interacting s 72.7 1.4E+02 0.0029 36.8 16.4 112 321-435 96-213 (1265)
202 KOG0161 Myosin class II heavy 71.2 3.5E+02 0.0076 36.7 21.0 19 321-339 842-860 (1930)
203 KOG0995 Centromere-associated 71.0 2.2E+02 0.0049 33.6 19.8 29 245-273 151-181 (581)
204 PF04778 LMP: LMP repeated reg 70.6 67 0.0015 31.8 11.3 108 348-457 12-133 (157)
205 PF09728 Taxilin: Myosin-like 69.0 1.8E+02 0.0039 31.7 16.4 109 440-562 48-156 (309)
206 COG1340 Uncharacterized archae 68.0 1.9E+02 0.0041 31.6 17.5 119 349-475 68-188 (294)
207 PF07888 CALCOCO1: Calcium bin 67.6 1.7E+02 0.0037 34.5 15.7 34 583-619 283-316 (546)
208 KOG0963 Transcription factor/C 67.2 1.4E+02 0.0031 35.5 15.0 175 416-620 256-438 (629)
209 KOG0946 ER-Golgi vesicle-tethe 66.7 3.2E+02 0.007 33.8 19.8 37 581-620 902-938 (970)
210 PRK04863 mukB cell division pr 65.7 1.5E+02 0.0034 38.9 16.4 81 534-614 446-527 (1486)
211 KOG0018 Structural maintenance 65.4 3.1E+02 0.0066 34.9 17.8 240 319-616 155-418 (1141)
212 TIGR02169 SMC_prok_A chromosom 62.8 3.8E+02 0.0083 33.3 25.1 16 323-338 673-688 (1164)
213 PF15294 Leu_zip: Leucine zipp 62.7 1.8E+02 0.0038 31.6 13.7 217 321-573 12-234 (278)
214 KOG0781 Signal recognition par 62.2 32 0.0007 39.8 8.5 89 82-179 405-509 (587)
215 PHA02562 46 endonuclease subun 60.9 3E+02 0.0065 31.5 22.2 37 350-389 213-249 (562)
216 PRK09039 hypothetical protein; 60.8 1.6E+02 0.0034 32.5 13.4 61 538-609 138-199 (343)
217 PF06810 Phage_GP20: Phage min 59.3 52 0.0011 32.3 8.5 93 399-513 2-95 (155)
218 PRK02224 chromosome segregatio 59.3 4.1E+02 0.0088 32.5 23.7 13 559-571 389-401 (880)
219 PF05701 WEMBL: Weak chloropla 58.9 3.5E+02 0.0075 31.5 20.2 15 509-523 339-353 (522)
220 PF00038 Filament: Intermediat 58.7 62 0.0014 34.2 9.7 19 256-274 6-24 (312)
221 TIGR00634 recN DNA repair prot 58.0 3.6E+02 0.0079 31.5 17.1 62 417-478 302-365 (563)
222 COG1340 Uncharacterized archae 57.9 2.9E+02 0.0062 30.2 16.8 99 373-476 68-168 (294)
223 COG0052 RpsB Ribosomal protein 57.7 9.7 0.00021 40.3 3.3 45 74-138 146-190 (252)
224 PF08317 Spc7: Spc7 kinetochor 56.8 1.4E+02 0.003 32.4 12.1 99 504-616 181-292 (325)
225 TIGR02168 SMC_prok_B chromosom 56.8 4.7E+02 0.01 32.4 19.4 8 418-425 208-215 (1179)
226 COG1570 XseA Exonuclease VII, 55.8 47 0.001 37.9 8.5 60 108-172 173-232 (440)
227 KOG4674 Uncharacterized conser 55.6 6.8E+02 0.015 33.9 20.9 15 318-332 806-820 (1822)
228 PF07464 ApoLp-III: Apolipopho 53.5 46 0.00099 32.9 7.0 47 564-616 102-148 (155)
229 KOG0796 Spliceosome subunit [R 53.0 1.6E+02 0.0036 32.3 11.6 76 469-553 63-138 (319)
230 KOG0995 Centromere-associated 51.7 4.8E+02 0.01 31.0 24.9 14 318-331 218-231 (581)
231 KOG0250 DNA repair protein RAD 51.7 4.8E+02 0.01 33.3 16.4 17 557-573 397-413 (1074)
232 PF14357 DUF4404: Domain of un 50.6 39 0.00084 30.0 5.5 39 464-507 2-40 (85)
233 PF07794 DUF1633: Protein of u 49.9 1.5E+02 0.0033 34.5 11.1 200 401-632 511-733 (790)
234 PRK12311 rpsB 30S ribosomal pr 49.9 13 0.00028 40.7 2.9 44 75-138 143-186 (326)
235 PF05622 HOOK: HOOK protein; 48.8 5.8 0.00012 47.4 0.0 39 348-386 272-310 (713)
236 PF04065 Not3: Not1 N-terminal 48.6 3.5E+02 0.0076 28.5 15.2 139 353-527 4-149 (233)
237 COG2433 Uncharacterized conser 48.3 1.4E+02 0.0029 35.7 10.7 41 447-502 413-453 (652)
238 PRK05299 rpsB 30S ribosomal pr 47.4 15 0.00033 38.8 2.9 44 75-138 148-191 (258)
239 PF07106 TBPIP: Tat binding pr 47.0 1.4E+02 0.0031 29.1 9.4 37 463-502 90-126 (169)
240 PF04286 DUF445: Protein of un 46.9 3.8E+02 0.0083 28.4 20.6 140 441-612 137-277 (367)
241 PF09789 DUF2353: Uncharacteri 46.8 1.7E+02 0.0037 32.2 10.7 99 442-551 79-182 (319)
242 TIGR01005 eps_transp_fam exopo 45.6 1.1E+02 0.0024 36.7 10.0 41 483-523 311-354 (754)
243 PF12718 Tropomyosin_1: Tropom 45.1 1.9E+02 0.0042 28.0 9.8 17 558-574 77-93 (143)
244 PRK00488 pheS phenylalanyl-tRN 44.9 63 0.0014 35.8 7.1 110 398-517 2-129 (339)
245 KOG0612 Rho-associated, coiled 44.8 2.1E+02 0.0045 36.8 12.0 16 556-571 618-633 (1317)
246 PF06626 DUF1152: Protein of u 44.6 46 0.001 36.2 6.0 68 111-180 103-171 (297)
247 TIGR01011 rpsB_bact ribosomal 44.0 20 0.00043 37.2 3.0 44 75-138 146-189 (225)
248 KOG0964 Structural maintenance 43.9 8E+02 0.017 31.3 17.0 239 348-623 687-939 (1200)
249 PF00804 Syntaxin: Syntaxin; 43.5 1.8E+02 0.0039 24.9 8.6 44 464-509 19-62 (103)
250 CHL00067 rps2 ribosomal protei 43.4 21 0.00045 37.2 3.0 44 75-138 152-195 (230)
251 COG4026 Uncharacterized protei 43.2 40 0.00087 35.4 5.0 42 489-531 139-180 (290)
252 COG1160 Predicted GTPases [Gen 42.9 2.6E+02 0.0056 32.2 11.7 125 44-190 10-143 (444)
253 KOG0612 Rho-associated, coiled 42.3 9E+02 0.02 31.5 20.7 28 589-616 699-726 (1317)
254 PRK11546 zraP zinc resistance 42.3 2.1E+02 0.0045 28.1 9.4 72 536-620 49-120 (143)
255 KOG0977 Nuclear envelope prote 42.1 6.6E+02 0.014 29.8 22.7 33 257-289 45-78 (546)
256 COG5570 Uncharacterized small 41.8 26 0.00057 28.9 2.7 13 545-557 16-28 (57)
257 KOG0933 Structural maintenance 41.5 8.7E+02 0.019 31.1 16.5 192 292-502 649-853 (1174)
258 KOG4643 Uncharacterized coiled 40.9 8.9E+02 0.019 31.0 16.1 178 417-616 482-663 (1195)
259 PF10168 Nup88: Nuclear pore c 40.7 3.9E+02 0.0085 32.6 13.4 15 128-142 241-255 (717)
260 PF05278 PEARLI-4: Arabidopsis 40.7 3.3E+02 0.0071 29.4 11.4 43 509-551 161-203 (269)
261 TIGR03545 conserved hypothetic 40.4 2.9E+02 0.0062 32.7 12.0 63 487-549 162-231 (555)
262 COG2082 CobH Precorrin isomera 38.6 91 0.002 32.4 6.7 48 118-176 143-190 (210)
263 KOG0979 Structural maintenance 38.2 9.6E+02 0.021 30.6 18.6 184 357-561 244-431 (1072)
264 PF05615 THOC7: Tho complex su 38.2 3.1E+02 0.0067 25.9 9.9 73 482-573 32-107 (139)
265 PRK04863 mukB cell division pr 38.2 1.1E+03 0.024 31.4 20.8 43 397-439 395-437 (1486)
266 KOG3156 Uncharacterized membra 38.1 79 0.0017 32.9 6.1 95 465-570 100-197 (220)
267 PF05266 DUF724: Protein of un 37.8 3.7E+02 0.008 27.4 10.9 80 407-528 19-100 (190)
268 COG4477 EzrA Negative regulato 37.8 4.9E+02 0.011 30.8 12.8 208 303-555 238-461 (570)
269 PF02601 Exonuc_VII_L: Exonucl 37.8 1.5E+02 0.0032 31.8 8.5 59 108-172 52-114 (319)
270 PF04778 LMP: LMP repeated reg 37.3 4.3E+02 0.0094 26.3 13.2 124 436-599 8-134 (157)
271 COG1830 FbaB DhnA-type fructos 37.1 1.4E+02 0.0031 32.0 8.1 40 102-141 117-157 (265)
272 PF05701 WEMBL: Weak chloropla 36.8 7.4E+02 0.016 28.9 22.6 14 603-616 340-353 (522)
273 PF03194 LUC7: LUC7 N_terminus 36.6 3.2E+02 0.0069 29.0 10.6 76 469-552 62-138 (254)
274 smart00503 SynN Syntaxin N-ter 36.5 3E+02 0.0065 24.4 9.2 70 534-619 5-76 (117)
275 KOG2203 GTP-binding protein [G 36.4 1.5E+02 0.0033 35.2 8.6 138 348-512 328-475 (772)
276 PRK10886 DnaA initiator-associ 35.8 76 0.0016 32.2 5.7 46 149-197 120-167 (196)
277 PF10234 Cluap1: Clusterin-ass 35.7 1.6E+02 0.0034 31.8 8.1 84 320-429 172-259 (267)
278 COG5185 HEC1 Protein involved 35.6 7.9E+02 0.017 28.9 15.4 134 401-577 234-367 (622)
279 KOG4603 TBP-1 interacting prot 35.4 3.7E+02 0.0079 27.5 10.0 36 582-617 92-133 (201)
280 COG3883 Uncharacterized protei 35.1 2.4E+02 0.0053 30.3 9.4 17 596-612 120-136 (265)
281 PRK11637 AmiB activator; Provi 34.9 6.8E+02 0.015 28.1 13.6 14 348-361 45-58 (428)
282 PRK11281 hypothetical protein; 34.7 1.1E+03 0.024 30.4 19.6 129 373-520 169-305 (1113)
283 PRK05954 precorrin-8X methylmu 34.5 1E+02 0.0022 31.8 6.4 16 162-177 169-184 (203)
284 PF00804 Syntaxin: Syntaxin; 34.3 2.6E+02 0.0056 23.9 8.2 52 559-616 19-72 (103)
285 PF07028 DUF1319: Protein of u 34.1 3.7E+02 0.008 26.0 9.4 87 420-553 40-126 (126)
286 COG4618 ArpD ABC-type protease 33.8 69 0.0015 37.5 5.5 68 126-204 488-555 (580)
287 PF14357 DUF4404: Domain of un 33.8 1.2E+02 0.0026 26.9 5.9 52 372-427 2-57 (85)
288 PF04645 DUF603: Protein of un 33.8 1.4E+02 0.0029 30.3 6.8 86 447-571 63-148 (181)
289 COG3222 Uncharacterized protei 33.8 41 0.00088 34.4 3.3 96 113-242 90-186 (211)
290 KOG3647 Predicted coiled-coil 33.7 2E+02 0.0043 31.2 8.4 89 318-432 113-205 (338)
291 KOG0780 Signal recognition par 33.7 1.5E+02 0.0031 34.0 7.7 21 164-184 242-262 (483)
292 PRK00286 xseA exodeoxyribonucl 33.4 2.4E+02 0.0052 31.7 9.7 29 110-138 175-203 (438)
293 KOG0946 ER-Golgi vesicle-tethe 33.1 1.1E+03 0.023 29.7 14.9 116 504-631 661-789 (970)
294 PRK08476 F0F1 ATP synthase sub 32.1 4.6E+02 0.0099 25.1 11.7 18 580-597 122-139 (141)
295 PF04799 Fzo_mitofusin: fzo-li 32.0 71 0.0015 32.2 4.6 59 500-571 102-161 (171)
296 TIGR00237 xseA exodeoxyribonuc 32.0 2.1E+02 0.0046 32.4 9.0 29 111-139 170-199 (432)
297 PF13851 GAS: Growth-arrest sp 31.9 5.7E+02 0.012 26.1 13.3 62 400-476 10-72 (201)
298 COG0796 MurI Glutamate racemas 31.7 4.6E+02 0.01 28.3 10.9 19 128-146 31-49 (269)
299 COG4245 TerY Uncharacterized p 31.6 62 0.0013 33.3 4.2 23 126-148 2-24 (207)
300 COG2433 Uncharacterized conser 31.5 1.5E+02 0.0032 35.4 7.6 44 437-502 424-467 (652)
301 PF13166 AAA_13: AAA domain 31.4 9.4E+02 0.02 28.5 19.1 32 582-613 437-468 (712)
302 PRK11637 AmiB activator; Provi 31.2 7.9E+02 0.017 27.6 20.6 22 490-511 115-136 (428)
303 PF12709 Kinetocho_Slk19: Cent 31.2 2.2E+02 0.0048 25.8 7.1 66 534-616 1-72 (87)
304 PRK08286 cbiC cobalt-precorrin 30.1 1.4E+02 0.003 31.1 6.5 15 163-177 181-195 (214)
305 PF05622 HOOK: HOOK protein; 30.1 17 0.00037 43.4 0.0 100 443-575 275-377 (713)
306 PRK05575 cbiC precorrin-8X met 29.9 1.3E+02 0.0029 31.0 6.3 15 162-176 174-188 (204)
307 KOG0933 Structural maintenance 29.8 1.3E+03 0.028 29.6 20.2 247 320-616 247-502 (1174)
308 cd01425 RPS2 Ribosomal protein 29.6 49 0.0011 33.2 3.1 42 77-138 120-161 (193)
309 PRK10884 SH3 domain-containing 29.5 2.6E+02 0.0057 28.8 8.4 19 460-478 87-105 (206)
310 cd02000 TPP_E1_PDC_ADC_BCADC T 29.2 2.9E+02 0.0064 29.3 9.1 43 126-178 125-167 (293)
311 smart00787 Spc7 Spc7 kinetocho 29.2 7.5E+02 0.016 27.1 12.2 51 559-620 209-259 (312)
312 PRK11546 zraP zinc resistance 29.1 3.1E+02 0.0067 27.0 8.3 82 482-575 40-121 (143)
313 PRK15321 putative type III sec 29.1 77 0.0017 29.4 3.9 37 394-430 35-71 (120)
314 cd09235 V_Alix Middle V-domain 28.1 8.2E+02 0.018 26.7 14.6 67 347-431 18-84 (339)
315 smart00806 AIP3 Actin interact 28.1 9.8E+02 0.021 27.6 16.3 103 487-593 150-267 (426)
316 KOG0963 Transcription factor/C 28.0 7.5E+02 0.016 29.8 12.5 27 317-343 249-275 (629)
317 PRK06264 cbiC precorrin-8X met 27.7 1.6E+02 0.0035 30.6 6.5 17 162-178 175-191 (210)
318 PRK10884 SH3 domain-containing 27.6 1.7E+02 0.0038 30.1 6.7 10 606-615 152-161 (206)
319 PF04645 DUF603: Protein of un 27.5 1.4E+02 0.003 30.2 5.7 39 418-456 114-152 (181)
320 TIGR00763 lon ATP-dependent pr 27.3 6.7E+02 0.014 30.6 12.6 155 441-627 119-287 (775)
321 PF06248 Zw10: Centromere/kine 27.1 6.6E+02 0.014 29.5 12.2 38 538-575 54-97 (593)
322 PF10186 Atg14: UV radiation r 27.1 5.7E+02 0.012 26.4 10.6 32 463-506 17-48 (302)
323 PRK05953 precorrin-8X methylmu 26.9 1.5E+02 0.0034 30.7 6.2 15 162-176 167-181 (208)
324 PF05911 DUF869: Plant protein 26.8 4.6E+02 0.0099 32.4 10.9 168 323-519 23-226 (769)
325 KOG3705 Glycoprotein 6-alpha-L 26.8 3.5E+02 0.0076 31.0 9.2 149 345-557 60-208 (580)
326 COG0532 InfB Translation initi 26.7 72 0.0016 37.2 4.1 48 127-174 53-116 (509)
327 COG0541 Ffh Signal recognition 26.3 2.9E+02 0.0062 31.9 8.6 97 83-185 128-262 (451)
328 PRK05782 bifunctional sirohydr 26.1 1.7E+02 0.0037 32.4 6.7 47 118-176 271-317 (335)
329 COG3937 Uncharacterized conser 25.9 3.7E+02 0.0081 25.3 7.8 19 576-594 83-101 (108)
330 PF07407 Seadorna_VP6: Seadorn 25.9 1.5E+02 0.0033 32.9 6.1 69 438-518 35-103 (420)
331 PF12732 YtxH: YtxH-like prote 25.7 2.8E+02 0.006 23.5 6.6 51 538-601 23-73 (74)
332 PF07106 TBPIP: Tat binding pr 25.3 2.8E+02 0.0062 27.0 7.5 54 538-594 73-127 (169)
333 PF02570 CbiC: Precorrin-8X me 25.2 40 0.00086 34.6 1.6 47 117-175 133-179 (198)
334 PF07407 Seadorna_VP6: Seadorn 24.6 1.5E+02 0.0033 32.8 5.8 53 534-603 36-88 (420)
335 TIGR01012 Sa_S2_E_A ribosomal 24.6 68 0.0015 32.8 3.1 21 118-138 122-142 (196)
336 KOG4673 Transcription factor T 24.3 1.4E+03 0.031 28.2 16.9 252 321-595 499-758 (961)
337 KOG3215 Uncharacterized conser 24.2 8.5E+02 0.018 25.6 11.7 28 445-478 95-122 (222)
338 PF09728 Taxilin: Myosin-like 23.6 9.8E+02 0.021 26.1 15.4 55 321-387 33-87 (309)
339 PRK13505 formate--tetrahydrofo 23.6 2.8E+02 0.0061 32.8 8.1 26 111-136 356-381 (557)
340 PRK04020 rps2P 30S ribosomal p 23.5 78 0.0017 32.6 3.3 22 117-138 127-148 (204)
341 PTZ00440 reticulocyte binding 23.2 2.4E+03 0.051 30.4 19.2 74 536-616 661-737 (2722)
342 COG4741 Predicted secreted end 23.0 1.8E+02 0.004 29.0 5.5 15 539-553 61-75 (175)
343 PF09730 BicD: Microtubule-ass 22.5 1.5E+03 0.033 27.9 16.7 44 559-603 396-439 (717)
344 KOG0992 Uncharacterized conser 22.4 9.3E+02 0.02 28.5 11.6 177 325-553 306-511 (613)
345 cd07945 DRE_TIM_CMS Leptospira 22.3 1.6E+02 0.0034 31.5 5.4 32 113-144 146-177 (280)
346 PRK10698 phage shock protein P 22.2 8.9E+02 0.019 25.1 10.8 89 509-616 122-217 (222)
347 PF05879 RHD3: Root hair defec 21.8 1.5E+03 0.033 27.7 15.4 184 318-520 289-487 (742)
348 PF07889 DUF1664: Protein of u 21.7 4.3E+02 0.0092 25.4 7.6 54 502-571 38-92 (126)
349 PF06248 Zw10: Centromere/kine 21.6 1.3E+03 0.029 27.0 14.3 161 316-511 6-176 (593)
350 COG0156 BioF 7-keto-8-aminopel 21.6 1.3E+02 0.0029 33.8 4.9 46 164-209 231-282 (388)
351 PRK08285 cobH precorrin-8X met 21.5 2.4E+02 0.0052 29.3 6.4 12 165-176 180-191 (208)
352 KOG2150 CCR4-NOT transcription 21.5 2.8E+02 0.006 32.9 7.4 41 556-612 36-77 (575)
353 PF09851 SHOCT: Short C-termin 21.2 84 0.0018 22.7 2.2 29 398-426 2-30 (31)
354 cd00089 HR1 Protein kinase C-r 21.0 3.8E+02 0.0082 22.6 6.5 31 535-568 7-37 (72)
355 COG1579 Zn-ribbon protein, pos 20.7 5.4E+02 0.012 27.4 8.8 104 419-550 73-176 (239)
356 PF08776 VASP_tetra: VASP tetr 20.4 1.6E+02 0.0035 23.1 3.6 33 445-478 6-38 (40)
357 TIGR03181 PDH_E1_alph_x pyruva 20.4 6.2E+02 0.013 27.7 9.7 44 126-179 143-186 (341)
358 PF00682 HMGL-like: HMGL-like 20.3 2.2E+02 0.0048 28.8 5.9 31 114-144 137-167 (237)
359 PRK00103 rRNA large subunit me 20.1 2.6E+02 0.0056 27.6 6.0 58 130-195 69-126 (157)
360 PF13758 Prefoldin_3: Prefoldi 20.0 4.6E+02 0.0099 24.4 7.1 31 467-502 13-43 (99)
No 1
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=1.7e-161 Score=1344.90 Aligned_cols=646 Identities=76% Similarity=1.123 Sum_probs=637.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+..+++|++++|..|+.++.++++++|++||||+||+++|||+||+++|||..+||+|+|+||+|+|+||++||||+|+|
T Consensus 117 ~~~~~~~~~~ei~~Le~k~~~~~~~iy~~LT~werV~~aR~p~RP~~~Dyi~~i~ddf~EL~Gdr~~~dD~aIVtGlGRI 196 (762)
T PLN03229 117 ANETGLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHIFNITDKFVELHGDRAGYDDPAIVTGIGTI 196 (762)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcCcccCCCCCCeEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||||+|+++++++.++||+++|.+|+|++|+|++|++|++|||+|+|||||++|.++|..|+++++++++.++
T Consensus 197 dGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~am 276 (762)
T PLN03229 197 DGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 276 (762)
T ss_pred CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+..+||+||||+|+|+|||||++++||+||||++|+|+|+||++||+|+|++..++++||+.+++||.+|+++|+||+||
T Consensus 277 asl~VP~ISVViGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaAsILwkd~~~A~eAAe~lkiTa~dL~~lGiiD~II 356 (762)
T PLN03229 277 FGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKAAEKLRITAQELCRLQIADGII 356 (762)
T ss_pred hCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHhCCCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCCCCccccccccccCCCCCCCCChhh
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQEGIPIDPKKKVNMKKKEGPIASKTSKEK 321 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (658)
|||+||||+||..+...|+.+|..+|.+|..+|+++|+.+||+|||+||.|.++.|+||+||+|||++|+++ +|+.+
T Consensus 357 pEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R~~kfr~~G~~~e~~~~~~~~~~~~~~~~~~~---~~~~~ 433 (762)
T PLN03229 357 PEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHRMLKFRKIGGFQEGVPVDPERKVNMKKREAVK---TPVRE 433 (762)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCcccCCCCChhhhcccchhccCC---CCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHH
Q 006153 322 LEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKI 401 (658)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (658)
|++||++||+||++||+|++.|++++|++||+||++|+|||||+|+++|||++||.+||+||||||++||+|||+|++|+
T Consensus 434 Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~ 513 (762)
T PLN03229 434 LEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKI 513 (762)
T ss_pred HHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCC
Q 006153 402 TELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGAS 481 (658)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s 481 (658)
++||+||||+|++||||++||+|++|||++++++.+++.+++..+|++|||++|.|+|++|++++||+++++||.++|+|
T Consensus 514 ~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s 593 (762)
T PLN03229 514 EKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGAS 593 (762)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHH
Q 006153 482 SFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKD 561 (658)
Q Consensus 482 ~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~ 561 (658)
++.++|++||+||+++|+|++.+|+.|++|+|+++..+..+.+...+++|++++++||++||+||+|+|+++||+|+||+
T Consensus 594 ~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~ 673 (762)
T PLN03229 594 SGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKS 673 (762)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhccCCCCCCCCCccCCCCCCCCCC
Q 006153 562 MIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLDGGVNNEHAKDDSSK 641 (658)
Q Consensus 562 kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~~~~~~~~~s~~~~~~~~~~~~ 641 (658)
|||+||+||+++|.|||.++|+|||+|+|||+|+|.+|||||+||+|||+|+.|++.+.++..++|||+++||+++++++
T Consensus 674 k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~~~~~~~g~~~~~~~~~~~~~ 753 (762)
T PLN03229 674 KIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAESNGSLKNDDDKEEDSK 753 (762)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhcccccccCCccCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccceeee
Q 006153 642 YDESRVEIN 650 (658)
Q Consensus 642 ~~~~~~~~~ 650 (658)
++++++|||
T Consensus 754 ~~~~~~~~n 762 (762)
T PLN03229 754 EDGSRVEVN 762 (762)
T ss_pred cccccccCC
Confidence 999999987
No 2
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=100.00 E-value=4.5e-77 Score=636.77 Aligned_cols=312 Identities=68% Similarity=1.126 Sum_probs=306.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+..+++|++++|..|++++.++.+++|++|||||+|+++|||+||+++|||..|||+|+||||||+|+||++||||+|+|
T Consensus 96 ~~~~~~~~~~ei~~l~~~~~~~~~~i~~~Lt~wq~vq~aRhp~RP~~~d~I~~i~ddf~EL~Gdr~~~dD~aIVtG~grI 175 (431)
T PLN03230 96 ANKTGVDFSAQIAELEERYDQVRRELYSRLTPVQRLSVARHPNRPTFLDHVLNMTDKWVELHGDRAGFDDPAIVCGIGSM 175 (431)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCHHHHHHHhhhHHhhhcCcccCCCCCCeEEEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||||+++++++++.+++|+++|++|+|++|+|++|++|++|||+|+|||||++|.++|..|+++++|+++.++
T Consensus 176 ~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~am 255 (431)
T PLN03230 176 EGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREM 255 (431)
T ss_pred CCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+.++||+|+||+|+|+||||+++++||+|+||++|+|+|+||++||+|+|++...++++++.+++||.+|+++|+||+||
T Consensus 256 s~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~~~A~eAAealkitA~dL~~~GiID~II 335 (431)
T PLN03230 256 FGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKAAEALRITAAELVKLGVVDEIV 335 (431)
T ss_pred hcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccccchHHHHHHcCCCHHHHHhCCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCCCCCCCccccccccccCCCC
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQEGIPIDPKKKVNMKKKEGPI 313 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~~~~~~~~~~~~~~~~~~~~~~ 313 (658)
|||+||||+||..+...|+.+|..+|.+|..+|+++|+.+||+|||+||.|.+..++||++|+|||+||+|+
T Consensus 336 ~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R~~kfr~~G~~~~~~~~~~~~~~~~~~~~~~~ 407 (431)
T PLN03230 336 PEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDRAAKFRKIGEFDEFGVVDPHIKRNMKKRDAPV 407 (431)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCcccccccChHHhhccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=100.00 E-value=9.3e-77 Score=605.92 Aligned_cols=293 Identities=56% Similarity=0.923 Sum_probs=288.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+.+..+|++++|..||.+..++.+++|.+|++||+++++|||+|||++|||..+|++|+|||||+.|+||+++|+|+||+
T Consensus 25 ~~~~~~~~~~eI~~Le~~~~~~~~~iy~~L~~wq~~q~ARhp~RP~tldyi~~i~~df~eL~GDR~f~dD~Aivgglar~ 104 (317)
T COG0825 25 AEENDVDLSDEIERLEKRLAELTKKIYSNLTPWQRVQLARHPDRPYTLDYIELLFTDFVELHGDRAFADDPAIVGGLARF 104 (317)
T ss_pred ccccccchHHHHHHHHhhHHHHhhhhhccCCHHHHHHHhhCCCCCcHHHHHHHHHhHHHHhcCccccCcChhheeeeeeE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||+++|+++++++.+||||+.|+|||||.|+|++|++|++|||+||||||+|+|.++|++||+++||+++..|
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em 184 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREM 184 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+.++||+||+|+|+++||||++++.+|.|+|+++|+|+|+||||||+|+|+|..++++|++.+++||.+|+++|+||.||
T Consensus 185 ~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySVisPEG~AsILWkD~~ka~eAAe~mkita~dLk~lgiID~II 264 (317)
T COG0825 185 ARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSVISPEGCASILWKDASKAKEAAEAMKITAHDLKELGIIDGII 264 (317)
T ss_pred hCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeeecChhhhhhhhhcChhhhHHHHHHcCCCHHHHHhCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCC
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQE 294 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~~~ 294 (658)
|||.||||+||..+...|+.+|...|.+|.++|.++++++||+|||+||.|.+
T Consensus 265 ~Ep~ggAhr~~~~~a~~l~~~l~~~l~~L~~l~~~el~~~R~~rf~~~G~~~~ 317 (317)
T COG0825 265 PEPLGGAHRDPEAAAEALKNALLKELHELDKLPEEELLARRYQRFRSIGLFEE 317 (317)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999853
No 4
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=100.00 E-value=8.6e-72 Score=584.20 Aligned_cols=292 Identities=54% Similarity=0.899 Sum_probs=286.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+.++++|++++|..|+.++.++.+++|++||||++|+++|||+||++++||..|||+|+|+||+|+|+||++||||+|+|
T Consensus 29 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~w~~v~~aR~~~Rp~~~d~i~~l~d~f~El~gd~~~~dd~avV~Glgri 108 (322)
T CHL00198 29 APKNDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDYIPYILDEWIELHGDRGGSDDPALVGGIGKI 108 (322)
T ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhhcCCCCCCHHHHHHHHhHHHHHHccccccCCCCceEEEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||||+++++++++.+++|+++|++|+|+.|+|++|++|++|||+|+|||||++|..+|.+|+++++++++.++
T Consensus 109 ~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~ 188 (322)
T CHL00198 109 NGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREM 188 (322)
T ss_pred CCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+..+||+||||+|+|+|||||++++||+|+||++|+|+|++||+||+|+|++..++++|++.+++||.+|+++|+||+||
T Consensus 189 a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d~~~a~~aA~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 189 FSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKDSKKSLDAAEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred HcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcchhhHHHHHHHcCCCHHHHHhCCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCC
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQ 293 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~~ 293 (658)
|||.||||+||..+...|+.+|..+|.+|..+|+++|+.+||+|||+||.|.
T Consensus 269 ~Ep~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~R~~k~~~~g~~~ 320 (322)
T CHL00198 269 PEPIGGAQADPASASKILKKKLIRQLDFLKILSPSELKAHRYEKFRKLGAFY 320 (322)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999875
No 5
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=100.00 E-value=2e-70 Score=574.29 Aligned_cols=293 Identities=55% Similarity=0.898 Sum_probs=286.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+.++++|++++|..|++++.++++++|++||||++|+++|||+|||.+++|+.|||+|+||||++.|++|+++|||+|+|
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~I~~l~d~f~El~gdr~~~dd~aiV~G~ari 105 (319)
T PRK05724 26 AEDSDVDLSEEIERLEKKLEELTKKIYSNLTPWQKVQLARHPQRPYTLDYIELLFTDFTELHGDRAFADDKAIVGGLARL 105 (319)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHhcCCCHHHhhhcccCCCCCCHHHHHHHHhhHHHHHcCCcCCCCCCceEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||||+++++++++.+++|+++|++|+|++|+|++|++|++|||+|+|||||++|.++|..|+++++++++.++
T Consensus 106 ~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~ 185 (319)
T PRK05724 106 NGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREM 185 (319)
T ss_pred CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+.++||+|+||+|+|+|||++++++||+|+|||+|+|+|++||+|++|+|++...++++++.+++|+.+|++.|+||+||
T Consensus 186 a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~~~~a~~aae~~~ita~~l~~~g~iD~II 265 (319)
T PRK05724 186 ARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASKAPEAAEAMKITAQDLKELGIIDEII 265 (319)
T ss_pred hCCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcCchhHHHHHHHcCCCHHHHHHCCCceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCCC
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGFQE 294 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~~~ 294 (658)
|||+||||+||..+...|+.+|...|.+|..+|+++|+.+||+|||+||.|.+
T Consensus 266 ~Ep~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~~R~~k~~~~g~~~~ 318 (319)
T PRK05724 266 PEPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELLERRYEKFMSIGRFLE 318 (319)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999998764
No 6
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=1.1e-69 Score=567.94 Aligned_cols=291 Identities=51% Similarity=0.832 Sum_probs=284.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+..+++|++++|..|++++.++.+++|++||||++|+++|||+|||..++|..|||+|+||+|+|.++||+++|||+|+|
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~~Rp~~~d~i~~l~d~f~EL~gd~~~~dd~aiVtG~ari 105 (316)
T TIGR00513 26 SRDEDVDLSEEIERLEKRSVELTKKIFSNLGAWQRLQLARHPDRPYTLDYIELIFDDFFELAGDRAYADDKAIVGGIARL 105 (316)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCchHHHHHHHhhhheeeccccCCCCCCceEEEEEEE
Confidence 34567999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHH
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTM 161 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~al 161 (658)
+|+||+|||||+++++++++.+++|+++|.+|+|++|+|++|++|++|||+|+||||+++|.++|..|+++++++++.++
T Consensus 106 ~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~ 185 (316)
T TIGR00513 106 DGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREM 185 (316)
T ss_pred CCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
+.++||+||||+|+|+||||+++++||+++|||+|+|+|++||+|++|+|++...++++++.+++||.+++++|+||+||
T Consensus 186 s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd~~~a~~aae~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 186 ARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASKAPKAAEAMKITAPDLKELGLIDSII 265 (316)
T ss_pred HcCCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccchhhHHHHHHHccCCHHHHHHCCCCeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCC
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFRKIGGF 292 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r~~G~~ 292 (658)
|||.||||+||..+...|+.+|..+|.+|..+|+++|+.+||+|||+||.|
T Consensus 266 ~ep~~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~R~~k~~~~g~~ 316 (316)
T TIGR00513 266 PEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTEELKNRRYQKLMSLGYF 316 (316)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999975
No 7
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=100.00 E-value=2e-57 Score=465.56 Aligned_cols=254 Identities=48% Similarity=0.718 Sum_probs=246.2
Q ss_pred ChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHH
Q 006153 32 TPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPH 111 (658)
Q Consensus 32 t~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~ 111 (658)
++|++|+++|+++||++|++|+.|||+|+|++|++.+++|++||||+|+|+|+||+||||+++++++++..+++|+++|.
T Consensus 3 ~~~~~v~~ar~~~r~~are~I~~L~D~F~El~g~~~~~~d~~vItG~gri~Gr~V~via~~~~~~~~d~~~~~~G~~~~~ 82 (256)
T PRK12319 3 DVARILKEARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQDNLKRNFGQPHPE 82 (256)
T ss_pred CHHHHHHHhccCCCCCHHHHHHHhCchheeccCCCCCCCCCcEEEEEEEECCEEEEEEEeccCCccccceeeeCCCCCHH
Confidence 69999999999999999999999999999999988888888999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEE
Q 006153 112 GYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLL 191 (658)
Q Consensus 112 g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~Vi 191 (658)
+|+|+.|++++|+++++|||+|+||||+++|..+|..|+++++++++.++++++||+|+||+|+|+|||+|++++||+++
T Consensus 83 g~rKa~R~~~lA~~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~ 162 (256)
T PRK12319 83 GYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVW 162 (256)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHc
Q 006153 192 MLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELG 271 (658)
Q Consensus 192 A~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~ 271 (658)
|||+++|+|++||+|++|+|++...++++++.+++|+.++++.|+||+||||+ |.++..+...|+.+|...|.+|.
T Consensus 163 m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~~~~a~~l~~~g~iD~ii~e~----~~~~~~~~~~~~~~~~~~l~~l~ 238 (256)
T PRK12319 163 MLENTMYAVLSPEGFASILWKDGSRATEAAELMKITAGELLEMGVVDKVIPEH----GYFSSEIIDMIKKNLIEELAQLS 238 (256)
T ss_pred EecCceEEEcCHHHHHHHHhcCcccHHHHHHHcCCCHHHHHHCCCCcEecCCC----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997 47888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 006153 272 KMDTQELLKHRNLKFRKI 289 (658)
Q Consensus 272 ~l~~~~ll~~R~~k~r~~ 289 (658)
.+|+++++++||+|||+|
T Consensus 239 ~~~~~~~~~~r~~~~~~~ 256 (256)
T PRK12319 239 QKPLEQLLEERYQRFRKY 256 (256)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 8
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-51 Score=463.05 Aligned_cols=251 Identities=24% Similarity=0.328 Sum_probs=236.1
Q ss_pred HHHHH--HcCcHHHHHHHHHHhccC-CCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhh-hhccccccc-
Q 006153 364 SEAAK--AMGMQEKFATLRAEFSKG-NSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLK-EFSNAKSLL- 438 (658)
Q Consensus 364 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~k-e~s~~~~~~- 438 (658)
++|.+ .+||+++|++||+||+|| ||++|++||+|+++|+|||+||||+||+||||.+||++++||+ |+|++++.-
T Consensus 424 ~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~ 503 (762)
T PLN03229 424 REAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQ 503 (762)
T ss_pred hccCCCCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccc
Confidence 44555 899999999999999999 9999999999999999999999999999999999999999999 999997511
Q ss_pred ----hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh----hcCCCCCCCCChHHHHHHHH------HHHHHHHH
Q 006153 439 ----DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ----DSGASSFSDLEDDLKEKLVE------TKKEIESE 504 (658)
Q Consensus 439 ----~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~----k~~~s~~~~l~~~Lkeki~k------~k~E~~~~ 504 (658)
.+.+++++||+|+||+|++|++.|+||+||++||+++. ..|+|+...|+++|++||.+ +|++|+..
T Consensus 504 ~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~ 583 (762)
T PLN03229 504 LMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEAL 583 (762)
T ss_pred cccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 36778999999999999999999999999999999998 77888899999999999999 99999999
Q ss_pred HHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHH
Q 006153 505 LIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCK 584 (658)
Q Consensus 505 l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~k 584 (658)
+++|++ +| ....+ .+++++++||+++|+||+++|++|++|++|+.+ +.||.||+++|.|||+++++|
T Consensus 584 ~aev~~-~g----------~s~~~-~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~-~~~k~e~a~~~~~p~~~~k~K 650 (762)
T PLN03229 584 KAEVAS-SG----------ASSGD-ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVI-GVTKKNKDTAEQTPPPNLQEK 650 (762)
T ss_pred HHHHHh-cC----------ccccC-CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhh-hhhhhhhcccccCCChhhHHH
Confidence 999999 77 22333 678899999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhccCCCCCCC
Q 006153 585 IQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLD 627 (658)
Q Consensus 585 ie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~~~~~~~~ 627 (658)
||+|+|||+|+|++|||||+||+|||+||+|+++||+|||..+
T Consensus 651 Ie~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~ 693 (762)
T PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTE 693 (762)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999999999999999999999999999999999999999874
No 9
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=100.00 E-value=2.7e-36 Score=335.90 Aligned_cols=208 Identities=24% Similarity=0.328 Sum_probs=188.0
Q ss_pred hhcCCCCCCC-HHHHHhhhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHH
Q 006153 38 NIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYR 114 (658)
Q Consensus 38 ~~ar~~~Rp~-are~I~~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~r 114 (658)
.+|+++.+|| +|++|+.|+| +|+|+++.|+ +++|||+|+|+|+||+|++||++ +++|++++.+++
T Consensus 270 ~iP~~~~~~~d~r~~i~~l~D~~sf~El~~~~g----~~vVtG~gri~G~~V~vvAnd~~--------~~~G~~~~~~~~ 337 (512)
T TIGR01117 270 LLPDNPNKPYDMRDVITAIVDNGDYLEVQPYYA----PNIITCFARINGQSVGIIANQPK--------VMAGCLDIDSSD 337 (512)
T ss_pred hCCCCCCCCCCHHHHHHHhCCCCceEEeeccCC----CcEEEEEEEECCEEEEEEEeccc--------cccCCCCHHHHH
Confidence 4788889999 9999999999 8999998876 89999999999999999999998 899999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q 006153 115 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANKL 190 (658)
Q Consensus 115 Ka~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~----aD~V 190 (658)
|++|++++|+++++|||+|+|||||.+|..+|..|+...+++++.+++.++||+|+||+|+|+|||++++++ +|++
T Consensus 338 K~~r~i~~a~~~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~ 417 (512)
T TIGR01117 338 KIARFIRFCDAFNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQV 417 (512)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999888864 9999
Q ss_pred EEEcCceEEEeCHHHHHHHhhhhccCc---hHHH------Hhh--cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHH
Q 006153 191 LMLENAVFYVASPEACAAILWKSAKAS---PKAA------EKL--KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQI 259 (658)
Q Consensus 191 iA~p~A~i~VmgPEgaAsIl~rd~~~~---~eAa------E~~--kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L 259 (658)
||||+|+++||+|++++.|+|++.... ++.+ +.. ..++..+.+.|+||+|| ||.+||.+|
T Consensus 418 ~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI---------~P~~tR~~l 488 (512)
T TIGR01117 418 YAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVI---------EPKQTRPKI 488 (512)
T ss_pred EEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeE---------ChHHHHHHH
Confidence 999999999999999999999875321 1111 111 23577889999999999 999999999
Q ss_pred HHHHHHH
Q 006153 260 KIAINES 266 (658)
Q Consensus 260 ~~aL~~~ 266 (658)
..+|...
T Consensus 489 ~~~l~~~ 495 (512)
T TIGR01117 489 VNALAML 495 (512)
T ss_pred HHHHHHH
Confidence 9999764
No 10
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=100.00 E-value=2.3e-36 Score=332.75 Aligned_cols=212 Identities=23% Similarity=0.297 Sum_probs=189.4
Q ss_pred hhhcCCCCCCC-HHHHHhhhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHH
Q 006153 37 VNIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGY 113 (658)
Q Consensus 37 v~~ar~~~Rp~-are~I~~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~ 113 (658)
-.+|-++++|| +|++|.+|+| +|+|+...|+ +++||||+||+|+||+||||+++ ..+|+++++++
T Consensus 278 ~ivP~d~~~pYDvrevI~rl~D~~~F~E~~~~~a----~~iV~GfaRi~G~pVGiIANqp~--------~~~G~l~~~sa 345 (526)
T COG4799 278 SIVPDDPRKPYDVREVIARLVDDGEFLEFKAGYA----KNIVTGFARIDGRPVGIIANQPR--------HLGGVLDIDSA 345 (526)
T ss_pred ccCCCCCCccccHHHHHHHhcCCccHHHHHhhhC----cceEEEEEEECCEEEEEEecCcc--------ccccccchHHH
Confidence 36788999999 9999999999 8999999998 99999999999999999999998 88999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccE
Q 006153 114 RKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANK 189 (658)
Q Consensus 114 rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~----aD~ 189 (658)
.|++||+++|+.+++|||+|+|||||.+|...|..|+.++.++++.+++.++||.|+||+|.+||||.++|+. +|+
T Consensus 346 ~KaArFI~~cd~~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~ 425 (526)
T COG4799 346 DKAARFIRLCDAFNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDF 425 (526)
T ss_pred HHHHHHHHhhhccCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975 999
Q ss_pred EEEEcCceEEEeCHHHHHHHhhhhccCchHH-H------------Hhhc--ccHHHHHHcCCceeeecCCCCCCCCChHH
Q 006153 190 LLMLENAVFYVASPEACAAILWKSAKASPKA-A------------EKLK--ITGSELCKLQIADGVIPEPLGGAHADPSW 254 (658)
Q Consensus 190 ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eA-a------------E~~k--itA~dL~~~GlVD~IIpe~~ggah~dp~~ 254 (658)
+||||+|.++||||+++++++|+......+. . +... ..+..+.+.|++|.|| ||.+
T Consensus 426 ~~AwP~a~iaVMG~egAv~i~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI---------~p~~ 496 (526)
T COG4799 426 NYAWPTAEIAVMGPEGAVSILYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVI---------DPAD 496 (526)
T ss_pred eEecCcceeeecCHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCccc---------CHHH
Confidence 9999999999999999999999754332111 1 0011 1234456779999999 9999
Q ss_pred HHHHHHHHHHHHHHH
Q 006153 255 TSQQIKIAINESMDE 269 (658)
Q Consensus 255 tr~~L~~aL~~~L~e 269 (658)
||.+|..+|......
T Consensus 497 tR~~L~~~l~~~~~k 511 (526)
T COG4799 497 TRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999988776654
No 11
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=100.00 E-value=3.6e-36 Score=333.86 Aligned_cols=211 Identities=26% Similarity=0.363 Sum_probs=176.8
Q ss_pred hhcCCCCCCC-HHHHHhhhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHH
Q 006153 38 NIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYR 114 (658)
Q Consensus 38 ~~ar~~~Rp~-are~I~~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~r 114 (658)
.+|.++.+|| +|++|..++| +|+|++++|+ +++|||||||+|+||+||||+++ +++|++++.+++
T Consensus 249 ~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g----~~~vtg~arl~G~pVGiian~~~--------~~~G~~~~~~a~ 316 (493)
T PF01039_consen 249 IIPDDRRRPYDMRDIIARIVDDGSFFELKPGYG----KNIVTGFARLGGRPVGIIANNPR--------QRAGALDPDGAR 316 (493)
T ss_dssp CS-SSTTS---HHHHHHHHSGGGBEEEESTTSS----TTEEEEEEEETTEEEEEEEE-TT--------CGGGEB-HHHHH
T ss_pred ccccccCCCCCcceeeEecccCCCceecccccc----CCeEEeeeeeCCcceEEEEeccc--------cccccCChHHHH
Confidence 4566678999 9999999999 7999999998 89999999999999999999998 789999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc----ccEE
Q 006153 115 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC----ANKL 190 (658)
Q Consensus 115 Ka~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~----aD~V 190 (658)
|++||+++|++|++|||+|+|||||.+|..+|..|+.+++++++.++++++||+|+||+|+++|||+++++. +|++
T Consensus 317 K~arfi~lcd~~~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~ 396 (493)
T PF01039_consen 317 KAARFIRLCDAFNIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFV 396 (493)
T ss_dssp HHHHHHHHHHHTT--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEE
T ss_pred HHHHHHHHHHhhCCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 4899
Q ss_pred EEEcCceEEEeCHHHHHHHhhhhccCchH-----H----HHh----h--cccHHHHHHcCCceeeecCCCCCCCCChHHH
Q 006153 191 LMLENAVFYVASPEACAAILWKSAKASPK-----A----AEK----L--KITGSELCKLQIADGVIPEPLGGAHADPSWT 255 (658)
Q Consensus 191 iA~p~A~i~VmgPEgaAsIl~rd~~~~~e-----A----aE~----~--kitA~dL~~~GlVD~IIpe~~ggah~dp~~t 255 (658)
+|||+|+++||+|++++.|+|++.....+ . .+. . ..++......|++|.|| +|.+|
T Consensus 397 ~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii---------~p~~t 467 (493)
T PF01039_consen 397 FAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDII---------DPAET 467 (493)
T ss_dssp EEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEES---------SGGGH
T ss_pred hhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCcc---------CHHHH
Confidence 99999999999999999999987643221 1 111 1 24567788899999999 99999
Q ss_pred HHHHHHHHHHHHHH
Q 006153 256 SQQIKIAINESMDE 269 (658)
Q Consensus 256 r~~L~~aL~~~L~e 269 (658)
|.+|..+|....+.
T Consensus 468 R~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 468 RKVLIAALEMLWQK 481 (493)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998765443
No 12
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=100.00 E-value=2e-35 Score=300.52 Aligned_cols=181 Identities=21% Similarity=0.248 Sum_probs=158.5
Q ss_pred HHHHHhhhcccceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHH-hh-h
Q 006153 48 FLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYY-AD-H 125 (658)
Q Consensus 48 are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~l-Ad-k 125 (658)
.+++|..|||++.+++++ +++|||+|+|+|+||+||||+++ + .++..++.|+++++.+ |+ +
T Consensus 2 ~~~~l~~l~d~~~~~e~~------~~vv~G~arl~G~~V~vIa~~~~--------~---~~g~~~~~k~A~~v~~~~d~~ 64 (238)
T TIGR03134 2 GRDWLAALFPNGHEVAGD------PGVLVGSAELAGGKVTVIGVVPD--------A---EVGLDEALALAQAVLDVIEAD 64 (238)
T ss_pred HHHHHHHHcCCCcEEecC------CcEEEEEEEECCEEEEEEEECCC--------C---cCChHHHHHHHHHHHHHHHhc
Confidence 578999999977777654 38999999999999999999987 3 4454566666677766 56 4
Q ss_pred cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcC---CCCEEEEEcCCCchhhhhhhcc-ccEEEEEcCceEEEe
Q 006153 126 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGL---KVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVA 201 (658)
Q Consensus 126 ~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a---~VPiISVViG~a~GGGAlalg~-aD~ViA~p~A~i~Vm 201 (658)
|++|||+|+|||||++|..+|..|+.+++|+++.+++.+ +||+|+||+|+++|||++++++ +|++||||+|+|+||
T Consensus 65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm 144 (238)
T TIGR03134 65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVM 144 (238)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEec
Confidence 999999999999999999999999999999888777655 5999999999999999999986 999999999999999
Q ss_pred CHHHHHHHhhhhccCchHHHHhhcc---cHHHHHHcCCceeeecCCC
Q 006153 202 SPEACAAILWKSAKASPKAAEKLKI---TGSELCKLQIADGVIPEPL 245 (658)
Q Consensus 202 gPEgaAsIl~rd~~~~~eAaE~~ki---tA~dL~~~GlVD~IIpe~~ 245 (658)
+|++|++|+|++...++++++.+++ ++.+++++|+||+||+++.
T Consensus 145 ~~e~aa~I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 145 DLESMARVTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred CHHHHHHHHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 9999999999999988888888665 4566899999999998873
No 13
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=100.00 E-value=1.2e-34 Score=325.29 Aligned_cols=203 Identities=20% Similarity=0.286 Sum_probs=180.4
Q ss_pred hhcCCCCCCC-HHHHHhhhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHH
Q 006153 38 NIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYR 114 (658)
Q Consensus 38 ~~ar~~~Rp~-are~I~~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~r 114 (658)
.+|.++.+|| +|++|..|+| +|+|+...|+ +++|||+|||+|+||+||||+ |++.+.+++
T Consensus 326 ivP~~~~~~yD~r~vi~~ivD~~sf~E~~~~~g----~~iVtG~aRi~G~~VgvvAn~-------------g~l~~~~a~ 388 (569)
T PLN02820 326 IVPADHKQSFDVRSVIARIVDGSEFDEFKKNYG----TTLVTGFARIYGQPVGIIGNN-------------GILFTESAL 388 (569)
T ss_pred ccCCCCCCCCCHHHHHHHhcCCceeEEecccCC----CcEEEEEEEECCEEEEEEEEC-------------CccCHHHHH
Confidence 4677788888 9999999999 7999999998 999999999999999999996 678999999
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEE
Q 006153 115 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG----CANKL 190 (658)
Q Consensus 115 Ka~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg----~aD~V 190 (658)
|++|||++|+++++|||+|+|||||++|.++|..|+.+++++++.+++.++||+|+||+|+|+|||+++|+ .+|++
T Consensus 389 Kaarfi~lc~~~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~ 468 (569)
T PLN02820 389 KGAHFIELCAQRGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFL 468 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 48999
Q ss_pred EEEcCceEEEeCHHHHHHHhhhhccC----------chHHH-------Hhh--cccHHHHHHcCCceeeecCCCCCCCCC
Q 006153 191 LMLENAVFYVASPEACAAILWKSAKA----------SPKAA-------EKL--KITGSELCKLQIADGVIPEPLGGAHAD 251 (658)
Q Consensus 191 iA~p~A~i~VmgPEgaAsIl~rd~~~----------~~eAa-------E~~--kitA~dL~~~GlVD~IIpe~~ggah~d 251 (658)
+|||+|+++||+|++++.|+++.... .++.. +.+ ..++......|+||+|| |
T Consensus 469 ~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VI---------d 539 (569)
T PLN02820 469 FMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVI---------D 539 (569)
T ss_pred EECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCccc---------C
Confidence 99999999999999999999974321 11111 111 23455567889999999 9
Q ss_pred hHHHHHHHHHHHHHH
Q 006153 252 PSWTSQQIKIAINES 266 (658)
Q Consensus 252 p~~tr~~L~~aL~~~ 266 (658)
|++||..|..+|...
T Consensus 540 P~dTR~~l~~~l~~~ 554 (569)
T PLN02820 540 PADTRRVLGLCLSAA 554 (569)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999754
No 14
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=100.00 E-value=6.5e-32 Score=282.06 Aligned_cols=205 Identities=17% Similarity=0.149 Sum_probs=177.3
Q ss_pred hhcCCCCCCCHHHHHhhhcc--cceEccCCCCC-----------C------------CCCceEEEEEEECCeEEEEEeee
Q 006153 38 NIARHPNRPTFLDHVFNITE--KFVELHGDRAG-----------Y------------DDPAIVTGIGSMDGRTYMFMGHQ 92 (658)
Q Consensus 38 ~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~~-----------~------------dD~aVVtG~GrI~GrpV~VIa~d 92 (658)
.-+.|+.|.++|+||+.|+| +|.|++..... | .+++||||+|+|+|+||+|+++|
T Consensus 50 ~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D 129 (292)
T PRK05654 50 PKCGHHMRISARERLDLLLDEGSFVELDAELEPKDPLKFRDSKKYKDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLAVMD 129 (292)
T ss_pred CCCCCCeeCCHHHHHHHHccCCccEEecCccccCCcccCCcccccchHHHHhhhccCCCCcEEEEEEEECCEEEEEEEEe
Confidence 34677899999999999999 89999863221 1 24899999999999999999999
Q ss_pred cCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEE
Q 006153 93 KGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 93 ~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVV 172 (658)
++ +++|+++..+++|++|++++|.++++|||+|+|+||++++++.-..+++..++..+..++.++||+|+||
T Consensus 130 ~~--------f~gGS~g~~~~eKi~r~~e~A~~~~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv 201 (292)
T PRK05654 130 FS--------FMGGSMGSVVGEKIVRAVERAIEEKCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVL 201 (292)
T ss_pred cc--------cccCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 9999999999999999999999999999999999999998877666676677778888888899999999
Q ss_pred cCCCchhhhhhhcc-ccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeecCCCCCCCCC
Q 006153 173 IGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHAD 251 (658)
Q Consensus 173 iG~a~GGGAlalg~-aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIpe~~ggah~d 251 (658)
+|+|+||+++.+++ +|+++|||+|.++++||+++...+... .++. -.+++.+.++|+||.|| +
T Consensus 202 ~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprvie~~~~e~---lpe~----~~~ae~~~~~G~vD~Vv---------~ 265 (292)
T PRK05654 202 TDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRVIEQTVREK---LPEG----FQRAEFLLEHGAIDMIV---------H 265 (292)
T ss_pred eCCCchHHHHHHHHcCCEEEEecCcEEEecCHHHHHhhhhhh---hhhh----hcCHHHHHhCCCCcEEE---------C
Confidence 99999999888765 999999999999999999988776432 1221 35778888999999999 8
Q ss_pred hHHHHHHHHHHHHHH
Q 006153 252 PSWTSQQIKIAINES 266 (658)
Q Consensus 252 p~~tr~~L~~aL~~~ 266 (658)
|.++|.+|.+.|..+
T Consensus 266 ~~e~r~~l~~~L~~~ 280 (292)
T PRK05654 266 RRELRDTLASLLALH 280 (292)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888653
No 15
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=100.00 E-value=1.2e-31 Score=279.13 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=176.4
Q ss_pred hhcCCCCCCCHHHHHhhhcc--cceEccCCCC------C-----C------------CCCceEEEEEEECCeEEEEEeee
Q 006153 38 NIARHPNRPTFLDHVFNITE--KFVELHGDRA------G-----Y------------DDPAIVTGIGSMDGRTYMFMGHQ 92 (658)
Q Consensus 38 ~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~------~-----~------------dD~aVVtG~GrI~GrpV~VIa~d 92 (658)
.-+.||.|.++|++|+.|+| +|.|++.... | | .+++||||+|+|+|+||+|+++|
T Consensus 49 ~~c~~h~rl~areRi~~L~D~gsF~E~~~~~~~~d~l~f~~~~~Y~~~l~~~~~~t~~~d~vVtG~g~I~G~~V~v~a~D 128 (285)
T TIGR00515 49 PKCDHHMRMDARERIESLLDEGSFEEFNSHLEPKDPLKFKDSKKYKDRIAKAQKETGEKDAVVTGKGTLYGMPIVVAVFD 128 (285)
T ss_pred CCCCCcCcCCHHHHHHHceeCCeeEEeCCccccCccccCCcccchhHHHHHHhhccCCCCcEEEEEEEECCEEEEEEEEe
Confidence 34678899999999999999 7999864211 1 1 24799999999999999999999
Q ss_pred cCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEE
Q 006153 93 KGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 93 ~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVV 172 (658)
++ +++|+++..+++|++|++++|.++++|||+|+|+||++++++.....+...++..+..++..+||+|+||
T Consensus 129 ~~--------f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv 200 (285)
T TIGR00515 129 FA--------FMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVL 200 (285)
T ss_pred cc--------ccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 9999999999999999999999999999999999999998877666666666667788888899999999
Q ss_pred cCCCchhhhhhhc-cccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeecCCCCCCCCC
Q 006153 173 IGEGGSGGALAIG-CANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHAD 251 (658)
Q Consensus 173 iG~a~GGGAlalg-~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIpe~~ggah~d 251 (658)
+|+|+||+++.++ ++|+++|||+|.++++||+++...+... .++- -++|+.+.++|+||.|| +
T Consensus 201 ~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprVie~ti~e~---lpe~----~q~ae~~~~~G~vD~iv---------~ 264 (285)
T TIGR00515 201 TDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREK---LPEG----FQTSEFLLEHGAIDMIV---------H 264 (285)
T ss_pred eCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHHHHHHhcCc---cchh----cCCHHHHHhCCCCcEEE---------C
Confidence 9999999988876 7999999999999999999887766532 2211 36788899999999999 8
Q ss_pred hHHHHHHHHHHHHHH
Q 006153 252 PSWTSQQIKIAINES 266 (658)
Q Consensus 252 p~~tr~~L~~aL~~~ 266 (658)
|.++|.+|.+.|..+
T Consensus 265 ~~~~r~~l~~~L~~~ 279 (285)
T TIGR00515 265 RPEMKKTLASLLAKL 279 (285)
T ss_pred cHHHHHHHHHHHHHH
Confidence 889999999888653
No 16
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.98 E-value=2.7e-32 Score=291.57 Aligned_cols=208 Identities=19% Similarity=0.254 Sum_probs=182.2
Q ss_pred hhcCCCCCCC-HHHHHhhhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHH
Q 006153 38 NIARHPNRPT-FLDHVFNITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYR 114 (658)
Q Consensus 38 ~~ar~~~Rp~-are~I~~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~r 114 (658)
.++.+..++| +|++|++++| .|.|+...|+ +++||||||++|+||+|++|+|. |.+|+++.+.+.
T Consensus 304 Iv~~~~~~~yd~r~vi~~iVD~~~f~E~~~~y~----~tlvtGfarlnG~tVgIvgnn~k--------f~~G~L~s~sa~ 371 (536)
T KOG0540|consen 304 IVPLNLTKAYDVREVIARIVDGSRFFEFKPGYG----DTLVTGFARLNGRTVGIVGNNPK--------FAGGVLFSESAV 371 (536)
T ss_pred ccccccccccchHhHHHhhcccchhhhhccccc----cceeeeeeeECCEEEEEeccCch--------hcccccchhhhh
Confidence 4556678899 9999999999 7999999888 89999999999999999999997 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc----cccEE
Q 006153 115 KALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG----CANKL 190 (658)
Q Consensus 115 Ka~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg----~aD~V 190 (658)
|.+||+++|.++++|+|+|+|.|||.+|..+|..|++++.|.++.+.++++||.|++++|+++| |+|+|+ ++|++
T Consensus 372 KgarfIe~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~m~sr~~~gd~~ 450 (536)
T KOG0540|consen 372 KGARFIELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYAMCSRGYSGDIN 450 (536)
T ss_pred hhHHHHHHHHhcCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-CcccccccccCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999 788875 39999
Q ss_pred EEEcCceEEEeCHHHHHHHhhhhccCch-----HHHHhhcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHH
Q 006153 191 LMLENAVFYVASPEACAAILWKSAKASP-----KAAEKLKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINE 265 (658)
Q Consensus 191 iA~p~A~i~VmgPEgaAsIl~rd~~~~~-----eAaE~~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~ 265 (658)
||||+|+++|||.++++.|+.+...... +..|.+ -.+......||+|+|| +|.+||..|...|..
T Consensus 451 yawP~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f-~npy~a~~Rg~~D~II---------~p~~tR~vl~~~l~~ 520 (536)
T KOG0540|consen 451 YAWPNARIAVMGGKQAANVIFQITLEKAVALKAPYIEKF-GNPYYAAARGWDDGII---------DPSDTRKVLGLDLQA 520 (536)
T ss_pred EEcccceeeeccccchhhhhhhhhhhhhhhhcchHHHHh-cCccHHHHhhcccccc---------ChhHhhHHHHHHHHH
Confidence 9999999999999999999987632211 111222 1223346889999999 999999999988866
Q ss_pred HHH
Q 006153 266 SMD 268 (658)
Q Consensus 266 ~L~ 268 (658)
++.
T Consensus 521 ~~~ 523 (536)
T KOG0540|consen 521 AAN 523 (536)
T ss_pred Hhc
Confidence 543
No 17
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=99.97 E-value=1e-31 Score=252.52 Aligned_cols=123 Identities=58% Similarity=0.955 Sum_probs=94.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhccCChhhHhhhcCCCCCCCHHHHHhhhcccceEccCCCCCCCCCceEEEEEEE
Q 006153 2 ANDTGLDFSDQIVSLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSM 81 (658)
Q Consensus 2 ~~~~~~~~~~~i~~le~~~~~~~~~i~~~lt~werv~~ar~~~Rp~are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI 81 (658)
+..+++|++++|..|++++.++.+++|++||||++|+++|||+||++.+||..|||+|+|+|||+.|+||++||+|+|++
T Consensus 23 ~~~~~~d~~~ei~~Le~k~~~l~~eiy~~lt~w~~V~~aRhp~Rp~~~dyI~~l~~df~ElhGDR~~~dD~AivgG~a~~ 102 (145)
T PF03255_consen 23 AEEGGIDLSDEIASLEEKLEKLRKEIYSNLTPWQRVQLARHPDRPTALDYIENLFDDFIELHGDRLFGDDPAIVGGIARF 102 (145)
T ss_dssp ---------TCHHHHHHHHHCCCCHHHHT--HHHHHHHHTBTTS--HHHHHHHH-EEEEE----SSS---TTEEEEEEEE
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhhCCCCCCHHHHHHHHhCcCeEecCCccCCcCccceeeeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhh
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD 124 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAd 124 (658)
+|+||+|||+++|+++++++.+||||+.|+|||||+|+|++|+
T Consensus 103 ~g~~V~vig~~KG~~~~e~~~rNFGm~~PeGYRKAlRlmk~Ae 145 (145)
T PF03255_consen 103 DGQPVTVIGQQKGRDTKENIKRNFGMPHPEGYRKALRLMKQAE 145 (145)
T ss_dssp TTEEEEEEEE---SSCCHHHHTGGG---HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCcCHHHHHHHcCCCCCcchHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
No 18
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=99.96 E-value=2.1e-28 Score=254.92 Aligned_cols=189 Identities=19% Similarity=0.156 Sum_probs=161.0
Q ss_pred hhcCCCCCCCHHHHHhhhcc--cceEccCCCC------C------C------------CCCceEEEEEEECCeEEEEEee
Q 006153 38 NIARHPNRPTFLDHVFNITE--KFVELHGDRA------G------Y------------DDPAIVTGIGSMDGRTYMFMGH 91 (658)
Q Consensus 38 ~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~------~------~------------dD~aVVtG~GrI~GrpV~VIa~ 91 (658)
.-+.|+.|.++|++|+.|+| +|.|++.... | | .+++||+|+|+|+|+||+|+++
T Consensus 61 p~c~~h~rltAreRI~~L~D~gSF~E~~~~~~~~dpl~f~~d~~~Y~~rl~~a~~~t~~~dgVVtG~G~I~Gr~v~v~a~ 140 (296)
T CHL00174 61 EQCGYHLKMSSSDRIELLIDPGTWNPMDEDMVSLDPIEFHSDEEPYKDRIDSYQKKTGLTDAVQTGIGQLNGIPVALGVM 140 (296)
T ss_pred CCCCCCcCCCHHHHHHHHccCCccEEcCCccCcCCCccccccccchHHHHHHHHhccCCCccEEEEEEEECCEEEEEEEE
Confidence 34678999999999999999 7999875322 1 1 1489999999999999999999
Q ss_pred ecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHH-HhcCCCCEEE
Q 006153 92 QKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRT-MFGLKVPIIS 170 (658)
Q Consensus 92 d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~a-ls~a~VPiIS 170 (658)
|++ |++|++|....+|+.|++++|.+.++|||+|+|++|++++++...+.|...++..+.. ....++|+|+
T Consensus 141 Dft--------f~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Is 212 (296)
T CHL00174 141 DFQ--------FMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYIS 212 (296)
T ss_pred CCc--------ccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEE
Confidence 998 9999999999999999999999999999999999999998887776665445443443 2257899999
Q ss_pred EEcCCCchhhhhhhcc-ccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeee
Q 006153 171 IVIGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVI 241 (658)
Q Consensus 171 VViG~a~GGGAlalg~-aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~II 241 (658)
||+|||+||+++.+++ +|+++|.|+|.++++||+++...+... .++- -++|+.++++|+||.|+
T Consensus 213 vl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrVIe~t~ge~---lpe~----fq~ae~l~~~G~vD~iV 277 (296)
T CHL00174 213 ILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRVIEQTLNKT---VPEG----SQAAEYLFDKGLFDLIV 277 (296)
T ss_pred EEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHHHHHhcCCc---CCcc----cccHHHHHhCcCceEEE
Confidence 9999999999999875 999999999999999999999877532 2321 36899999999999999
No 19
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=99.96 E-value=3.4e-27 Score=244.46 Aligned_cols=206 Identities=18% Similarity=0.148 Sum_probs=161.7
Q ss_pred CCCCCHHHHHhhhcc--cceEccCCCCC-------------CCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCC
Q 006153 43 PNRPTFLDHVFNITE--KFVELHGDRAG-------------YDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGM 107 (658)
Q Consensus 43 ~~Rp~are~I~~L~D--~F~EL~gd~~~-------------~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGs 107 (658)
--+.++|++|+.|+| +|.|+.+.... ..+++||+|+|+|+|+||+|+++|++ +++|+
T Consensus 3 ~~~ltAReRi~~LlD~gSF~E~~g~~~~~~~~~l~~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~t--------~~GGS 74 (274)
T TIGR03133 3 FYEANARERARGLLDAGSFRELLGPFDRVISPHLPRQGIVPQFDDGVVVGRGTIDGKPVVVAAQEGR--------FQGGS 74 (274)
T ss_pred cccCCHHHHHHHhcCCCcceEcccccccccCcchhhhcccCCCCCeEEEEEEEECCEEEEEEEECCC--------ccCcC
Confidence 356789999999999 89999433221 12689999999999999999999998 99999
Q ss_pred CCHHHHHHHHHHHHHhhh-----cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC--Cchhh
Q 006153 108 PTPHGYRKALRMMYYADH-----HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE--GGSGG 180 (658)
Q Consensus 108 l~p~g~rKa~R~i~lAdk-----~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~--a~GGG 180 (658)
+++.+.+|+.|++++|.+ .++|+|+|+||+|+++++......+...++..+..++.. ||+|++|.|+ |+||+
T Consensus 75 ~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~ 153 (274)
T TIGR03133 75 VGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGM 153 (274)
T ss_pred CCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHH
Confidence 999999999999999987 568999999999999987655554444566667777776 9999999999 89999
Q ss_pred hhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhh-cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHH
Q 006153 181 ALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKL-KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQI 259 (658)
Q Consensus 181 Alalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~-kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L 259 (658)
++.+++||++||.+++++++.||+++...+........+.+-.. -+.....+..|.+|.+++. |....+..+
T Consensus 154 a~~a~l~D~vim~~~a~i~~aGP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~d-------d~~a~~~~~ 226 (274)
T TIGR03133 154 GIAAGLCSYLIMTEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVED-------DVDAFRAAV 226 (274)
T ss_pred HHHHhcCCEEEEeCCcEEeccCHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCC-------HHHHHHHHH
Confidence 99999999999999999999999999987764322222211011 1333456779999999943 444555555
Q ss_pred HHHHH
Q 006153 260 KIAIN 264 (658)
Q Consensus 260 ~~aL~ 264 (658)
..+|.
T Consensus 227 ~~~l~ 231 (274)
T TIGR03133 227 IAALA 231 (274)
T ss_pred HHHHh
Confidence 54443
No 20
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=99.95 E-value=3.8e-27 Score=246.60 Aligned_cols=208 Identities=17% Similarity=0.159 Sum_probs=159.7
Q ss_pred CCCCCCCHHHHHhhhcc--cceEccCCCCC-------------CCCCceEEEEEEECCeEEEEEeeecCCCccccccccC
Q 006153 41 RHPNRPTFLDHVFNITE--KFVELHGDRAG-------------YDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNF 105 (658)
Q Consensus 41 r~~~Rp~are~I~~L~D--~F~EL~gd~~~-------------~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~g 105 (658)
++-.+.++|++|+.||| +|.|+.+.... ..+++||+|+|+|+|+||+|+++|++ |++
T Consensus 10 ~s~~~ltARERi~~LlD~gSF~E~~g~~~~~~~~~~~~~~~~~~~~dGvV~G~G~I~Gr~v~v~a~D~t--------f~G 81 (301)
T PRK07189 10 RSFIEASARERAAALLDAGSFRELLGPFERVMSPHLPLQGIPPQFDDGVVVGKGTLDGRPVVVAAQEGR--------FMG 81 (301)
T ss_pred CCceeCCHHHHHHHhcCCCcceEcccccccccCcchhhhccCCCCCCcEEEEEEEECCEEEEEEEECCC--------ccC
Confidence 45567789999999999 89999433221 12589999999999999999999998 999
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-----CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC--Cch
Q 006153 106 GMPTPHGYRKALRMMYYADHHG-----FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE--GGS 178 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~-----lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~--a~G 178 (658)
|++|+.+.+|+.|++++|.+.+ +|+|+|+||+|+++++......+...++..+..++.. ||+|+||.|+ |+|
T Consensus 82 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~G 160 (301)
T PRK07189 82 GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFG 160 (301)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcH
Confidence 9999999999999999999999 9999999999999987654444444566667777776 9999999999 999
Q ss_pred hhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhccc-HHHHHHcCCceeeecCCCCCCCCChHHHHH
Q 006153 179 GGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKIT-GSELCKLQIADGVIPEPLGGAHADPSWTSQ 257 (658)
Q Consensus 179 GGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kit-A~dL~~~GlVD~IIpe~~ggah~dp~~tr~ 257 (658)
|+++.+++||++||.++|++++.||+++...+........+-+-....+ ....+..|.+|.+++. +.+.+++
T Consensus 161 G~a~~a~l~D~iIm~~~a~iglaGP~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~~sG~~D~~v~d-------d~~a~~~ 233 (301)
T PRK07189 161 GMGIAAALCSYLIVSEEGRLGLSGPEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVDD-------DVAAFRA 233 (301)
T ss_pred HHHHHHhcCCEEEEECCcEEeccCHHHHHHhcCCcccCHHHhcccccccCcceeeecccceEEeCC-------HHHHHHH
Confidence 9999999999999999999999999998887653211111110000000 1123457899998843 4445555
Q ss_pred HHHHHHH
Q 006153 258 QIKIAIN 264 (658)
Q Consensus 258 ~L~~aL~ 264 (658)
.+..++.
T Consensus 234 ~~~~~~~ 240 (301)
T PRK07189 234 AALALLA 240 (301)
T ss_pred HHHHHHh
Confidence 4444443
No 21
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=99.95 E-value=8.2e-27 Score=262.26 Aligned_cols=176 Identities=24% Similarity=0.320 Sum_probs=149.4
Q ss_pred hccCChhhHhhhcCCCCCCCHHHHHhhhcc--c-ceEccCCCCC--C-C---CCceEEEEEEECCeEEEEEeeecCCCcc
Q 006153 28 YTHLTPIQRVNIARHPNRPTFLDHVFNITE--K-FVELHGDRAG--Y-D---DPAIVTGIGSMDGRTYMFMGHQKGRNTK 98 (658)
Q Consensus 28 ~~~lt~werv~~ar~~~Rp~are~I~~L~D--~-F~EL~gd~~~--~-d---D~aVVtG~GrI~GrpV~VIa~d~~~~~~ 98 (658)
...+.+.+++...+..++.++|++|+.||| + |+|++...+. | + .++||||+|+|+|+||+|++||++
T Consensus 64 ~~~~gg~~~v~r~~~~gkltaReRI~~LlD~gS~F~El~~lag~~~y~~~~~~dgVVtG~G~V~Gr~V~v~a~D~t---- 139 (569)
T PLN02820 64 VRAGGGPEAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRLCMFVANDPT---- 139 (569)
T ss_pred HHhcCCHhHHHhhhhcCCCCHHHHHHHHcCCCCCeEEchhhccCCcccccCCCCeEEEEEEEECCEEEEEEEECCC----
Confidence 334666667666666677779999999999 6 9998743221 1 1 268999999999999999999998
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhc---hHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELG---QGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~G---q~~aiA~~l~als~a~VPiISVViG~ 175 (658)
+++|++++.+++|+.|++++|.++++|||+|+||+|++++.+.+.+. +...++..+..++..+||+|+||+|+
T Consensus 140 ----v~GGs~g~~~~~Ki~r~~elA~~~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~ 215 (569)
T PLN02820 140 ----VKGGTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGS 215 (569)
T ss_pred ----ccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999965555442 33567777777888899999999999
Q ss_pred CchhhhhhhccccEEEEEc-CceEEEeCHHHHHHHhh
Q 006153 176 GGSGGALAIGCANKLLMLE-NAVFYVASPEACAAILW 211 (658)
Q Consensus 176 a~GGGAlalg~aD~ViA~p-~A~i~VmgPEgaAsIl~ 211 (658)
|+|||+|+++++|+++|.+ ++.++++||+++..++.
T Consensus 216 ~~gGgAy~~a~~D~vim~~~~a~i~~aGP~vV~~~~G 252 (569)
T PLN02820 216 CTAGGAYVPAMADESVIVKGNGTIFLAGPPLVKAATG 252 (569)
T ss_pred CChHHHHHHHhCCceEEecCCcEEEecCHHHHHhhcC
Confidence 9999999999999999987 59999999998887765
No 22
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=99.94 E-value=2.8e-26 Score=234.25 Aligned_cols=213 Identities=17% Similarity=0.159 Sum_probs=182.6
Q ss_pred hhHhhhcCCCCCCCHHHHHhhhcc--cceEccCCCC------C-----------------CCCCceEEEEEEECCeEEEE
Q 006153 34 IQRVNIARHPNRPTFLDHVFNITE--KFVELHGDRA------G-----------------YDDPAIVTGIGSMDGRTYMF 88 (658)
Q Consensus 34 werv~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~------~-----------------~dD~aVVtG~GrI~GrpV~V 88 (658)
+..+.-+.|+.|.+++++|..++| +|.|+..... | +.+++||+|.|+|+|+||++
T Consensus 47 ~~vcp~c~~h~ri~A~~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~ 126 (294)
T COG0777 47 LKVCPKCGHHMRISARERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVL 126 (294)
T ss_pred hhcccccCcccccCHHHHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEE
Confidence 445566889999999999999999 8999886311 1 12699999999999999999
Q ss_pred EeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCE
Q 006153 89 MGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPI 168 (658)
Q Consensus 89 Ia~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPi 168 (658)
.++|+. |.+|++|...++|++|+++.|.+.++|+|+|..|+|++++++.-.+.|...+...+..+.+++.|+
T Consensus 127 av~df~--------FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpy 198 (294)
T COG0777 127 AVMDFA--------FMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPY 198 (294)
T ss_pred EEEecc--------ccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 999998 999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred EEEEcCCCchhhhhhhc-cccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeecCCCCC
Q 006153 169 ISIVIGEGGSGGALAIG-CANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGG 247 (658)
Q Consensus 169 ISVViG~a~GGGAlalg-~aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIpe~~gg 247 (658)
|+|+++|++||-...++ ++|+++|.|+|.|+++||+++.+.+.. .+|+- .+++++|+++|.||.||
T Consensus 199 IsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire---~LPeg----fQ~aEfLlehG~iD~iv------ 265 (294)
T COG0777 199 ISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIRE---KLPEG----FQTAEFLLEHGMIDMIV------ 265 (294)
T ss_pred EEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcc---cCCcc----hhhHHHHHHcCCceeee------
Confidence 99999999988666655 599999999999999999999988753 33443 37899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHcCCC
Q 006153 248 AHADPSWTSQQIKIAINESMDELGKMD 274 (658)
Q Consensus 248 ah~dp~~tr~~L~~aL~~~L~eL~~l~ 274 (658)
+ |..++..|...|..+...+
T Consensus 266 ---~----R~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 266 ---H----RDELRTTLASLLAKLTPQP 285 (294)
T ss_pred ---c----HHHHHHHHHHHHHHhCCCC
Confidence 3 3455556666655554443
No 23
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=99.93 E-value=3.6e-25 Score=247.13 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=157.4
Q ss_pred ccCChhhHhhhcCCCCCCCHHHHHhhhcc--cceEccCCCCC-----------CCCCceEEEEEEECCeEEEEEeeecCC
Q 006153 29 THLTPIQRVNIARHPNRPTFLDHVFNITE--KFVELHGDRAG-----------YDDPAIVTGIGSMDGRTYMFMGHQKGR 95 (658)
Q Consensus 29 ~~lt~werv~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~~-----------~dD~aVVtG~GrI~GrpV~VIa~d~~~ 95 (658)
..+.+..++...+..+|.++|++|+.||| +|.|++..... ...++||||+|+|+|+||+|+++|++
T Consensus 14 ~~~g~~~~~~r~~~~g~l~areRi~~LlD~gsF~E~~~~~~~~~~~~~~~~~~~~~dgvVtG~G~v~Gr~v~v~a~D~t- 92 (512)
T TIGR01117 14 KQGGGEKRIEKQHAQGKMTARERLALLFDPGSFVEIDQFVKHRCTNFGMDKKELPAEGVVTGYGTIDGRLVYAFAQDFT- 92 (512)
T ss_pred HhcCChhhHHhHHhcCCCCHHHHHHHhcCCCcEEEecCccccCCCCccccccCCCCceEEEEEEEECCEEEEEEEECCc-
Confidence 34666666666666788889999999999 89998752211 12479999999999999999999998
Q ss_pred CccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 96 NTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 96 ~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
+++|++++.+++|+.|++++|.+.++|||+|+|++|++++++...+.+...++..+..++ ..+|+|++|+|+
T Consensus 93 -------~~gGS~g~~~~~K~~r~~e~A~~~~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s-~~iP~Isvv~G~ 164 (512)
T TIGR01117 93 -------VMGGSLGEMHAAKIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIAS-GVVPQISAIMGP 164 (512)
T ss_pred -------ccccCCCHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHc-CCCcEEEEEecC
Confidence 999999999999999999999999999999999999999876665555444554444444 469999999999
Q ss_pred CchhhhhhhccccEEEEEcC-ceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHH-------HHcCCceeeec
Q 006153 176 GGSGGALAIGCANKLLMLEN-AVFYVASPEACAAILWKSAKASPKAAEKLKITGSEL-------CKLQIADGVIP 242 (658)
Q Consensus 176 a~GGGAlalg~aD~ViA~p~-A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL-------~~~GlVD~IIp 242 (658)
|+||+++.+++||+++|.++ +++++.||+++...+... ++++++ ...|++|.+++
T Consensus 165 ~~GG~a~~~al~D~vim~~~~a~i~~aGP~vv~~~~Ge~------------v~~e~lGGa~~h~~~sGv~d~~~~ 227 (512)
T TIGR01117 165 CAGGAVYSPALTDFIYMVDNTSQMFITGPQVIKTVTGEE------------VTAEQLGGAMAHNSVSGVAHFIAE 227 (512)
T ss_pred CCcHHHHHHHhcCceEEeccceEEEecChHHHHhhcCcc------------cchhhcchHHHhccccceeEEecC
Confidence 99999999999999999997 689999999988876532 233333 24688888874
No 24
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=99.92 E-value=1.3e-24 Score=240.11 Aligned_cols=172 Identities=22% Similarity=0.290 Sum_probs=149.4
Q ss_pred ChhhHhhhcCCCCCCCHHHHHhhhcc--cceEccCCCCCC--------CCCceEEEEEEECCeEEEEEeeecCCCccccc
Q 006153 32 TPIQRVNIARHPNRPTFLDHVFNITE--KFVELHGDRAGY--------DDPAIVTGIGSMDGRTYMFMGHQKGRNTKENI 101 (658)
Q Consensus 32 t~werv~~ar~~~Rp~are~I~~L~D--~F~EL~gd~~~~--------dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~ 101 (658)
.+...+...+.+++.++|++|..|+| +|+|++.-.... ..+++|||+|+|||++|+|+++|++
T Consensus 29 gg~~~~~~~~~~GkltaReRv~~LlD~Gsf~El~~~a~~~~~~~~~~~~~dGvVtG~G~i~Gr~~~v~a~D~T------- 101 (526)
T COG4799 29 GGEKAVEKQHGKGKLTARERVELLLDPGSFLELGALAGHRMGGDANELPGDGVVTGIGTINGRKVFVFANDFT------- 101 (526)
T ss_pred CCHHHhhhccccCcCcHHHHHHHHcCCCchhhhhhhhhcccccccccCCCCeeEEeeeeeCCeEEEEEEecCc-------
Confidence 34444555556778889999999999 899987533321 1479999999999999999999998
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q 006153 102 QRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGA 181 (658)
Q Consensus 102 ~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGA 181 (658)
+.+|++++...+|..|++++|.+.++|+|.|.|++|++++++...+...+.++.+...++.. ||+|++|+|+|.|||+
T Consensus 102 -V~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~-IPqIsvv~G~c~gGga 179 (526)
T COG4799 102 -VKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGV-IPQISVVMGPCAGGGA 179 (526)
T ss_pred -eecccccccccchHHHHHHHHHHcCCCEEEEEcccccccccCccccccchHHHHHHHHhccC-CCEEEEEEecCccccc
Confidence 99999999999999999999999999999999999999998877665556788888888877 9999999999999999
Q ss_pred hhhccccEEEEEcC-ceEEEeCHHHHHHHhhh
Q 006153 182 LAIGCANKLLMLEN-AVFYVASPEACAAILWK 212 (658)
Q Consensus 182 lalg~aD~ViA~p~-A~i~VmgPEgaAsIl~r 212 (658)
|.++++|++||.++ +.+++.||.++-.++..
T Consensus 180 Y~pal~D~~imv~~~~~mfltGP~~ik~vtGe 211 (526)
T COG4799 180 YSPALTDFVIMVRDQSYMFLTGPPVIKAVTGE 211 (526)
T ss_pred ccccccceEEEEcCCccEEeeCHHHHHhhcCc
Confidence 99999999999999 89999999976666543
No 25
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=99.90 E-value=2.6e-23 Score=231.40 Aligned_cols=186 Identities=22% Similarity=0.267 Sum_probs=155.5
Q ss_pred CCCCCHHHHHhhhcc--cceEccCCCCC---------CCCCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHH
Q 006153 43 PNRPTFLDHVFNITE--KFVELHGDRAG---------YDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPH 111 (658)
Q Consensus 43 ~~Rp~are~I~~L~D--~F~EL~gd~~~---------~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~ 111 (658)
.+|.++|++|+.|+| +|.|++..... ..+++||||+|+|+|++|+|+++|++ +.+|++++.
T Consensus 5 ~Gk~~areRi~~L~D~gSF~E~~~~~~~~~~~~~~~~~p~~gvvtG~G~I~G~~v~v~a~D~t--------~~gGs~g~~ 76 (493)
T PF01039_consen 5 RGKLTARERIDLLLDPGSFRELGDLAGAARYKFGREKTPGDGVVTGIGKINGRPVVVIAQDFT--------VLGGSVGEV 76 (493)
T ss_dssp TTEEEHHHHHHHHSGTTEBEEESTTHHTTHCGGGGGH-TTTTEEEEEEEETTEEEEEEEEETT--------SGGGTBSHH
T ss_pred cCCcCHHHHHHHhcCCCCCcCchHHHhccccccccccCCCCcEEEEEEeeCCeeEEEEEeccc--------eecCCCCcc
Confidence 356679999999999 89999854321 13579999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhhhcCCcEEEEecCCCC--CCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q 006153 112 GYRKALRMMYYADHHGFPIVTFIDTPGA--YADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK 189 (658)
Q Consensus 112 g~rKa~R~i~lAdk~~lPIV~LiDTpGa--~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ 189 (658)
.++|+.|++++|.+.++|+|+|+|++|+ ++..+...+.+...++..+..++. ++|+|++|+|+|+|||+|.+++||+
T Consensus 77 ~~~Ki~ra~~~A~~~~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~ 155 (493)
T PF01039_consen 77 HGEKIARAIELALENGLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAALSDF 155 (493)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHHSSE
T ss_pred cceeeehHHHHHHHcCCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccccCc
Confidence 9999999999999999999999999999 777887777666678888888887 9999999999999999999999999
Q ss_pred EEEEcC-ceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeec
Q 006153 190 LLMLEN-AVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIP 242 (658)
Q Consensus 190 ViA~p~-A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIp 242 (658)
+||.++ +.+++.||+++.+.+... ....+. .-........|++|.+++
T Consensus 156 ~i~~~~~a~i~l~GP~vv~~~~Ge~-~~~~~l----gG~~~h~~~sG~~d~v~~ 204 (493)
T PF01039_consen 156 VIMVKGTARIFLAGPRVVESATGEE-VDSEEL----GGADVHAAKSGVVDYVVD 204 (493)
T ss_dssp EEEETTTCEEESSTHHHHHHHHSSC-TSHHHH----HBHHHHHHTSSSSSEEES
T ss_pred cccCccceEEEeccccccccccCcc-ccchhh----hhhhhhcccCCCceEEEe
Confidence 999998 999999999998887621 111110 001122457899999994
No 26
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=99.80 E-value=9.2e-20 Score=196.00 Aligned_cols=188 Identities=24% Similarity=0.350 Sum_probs=152.9
Q ss_pred CChhh-HhhhcCCCCCCCHHHHHhhhcc--c-ceEccCCCCC--C-----CCCceEEEEEEECCeEEEEEeeecCCCccc
Q 006153 31 LTPIQ-RVNIARHPNRPTFLDHVFNITE--K-FVELHGDRAG--Y-----DDPAIVTGIGSMDGRTYMFMGHQKGRNTKE 99 (658)
Q Consensus 31 lt~we-rv~~ar~~~Rp~are~I~~L~D--~-F~EL~gd~~~--~-----dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e 99 (658)
|++-+ ++..-+..+..++|++|+.|+| + |+|+..-.+. | ...+||||.|+|+|+.|+|++||++
T Consensus 48 ~ggg~k~vd~~~srgkl~arerIdlLld~gs~Fie~d~fa~h~m~~~e~~ps~sIvtg~g~i~gr~~~vianDfT----- 122 (536)
T KOG0540|consen 48 LGGGEKAVDAHHSRGKLLARERIDLLLDPGSPFIELDQFAGHEMYGKEKVPSGSIVTGRGRINGRKCFVIANDFT----- 122 (536)
T ss_pred ccCChhhhhhhhhhcccchhhhhhhccCCCCcceehhhhhhhhhccccCCCCCceEeccccccceEEEEEccCch-----
Confidence 44443 4444444555569999999999 4 9997632111 1 2589999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhch---HHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 100 NIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 100 ~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq---~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+.+|+.+|....|.+|.++.|...++|+|+|+||+|++++.+++.+-- ...|+.+-.-|+...+|.|++|+|.|
T Consensus 123 ---v~ggs~y~i~~kk~lr~~e~a~~~~~p~iyL~DSgga~l~~~~es~~d~~~~~~If~n~n~mss~~ipqis~Img~C 199 (536)
T KOG0540|consen 123 ---VKGGSYYPITVKKHLRAQEIADNNRLPCIYLVDSGGARLPRQAESFADSYHFGRIFYNQNVMSSGNIPQISVIMGSC 199 (536)
T ss_pred ---hcccccchhhHHHHhhHHHHHhhcCCCceeEecCccccCcchhhhcCChhhhheeeeecceeccCCCCceeEEEecc
Confidence 999999999999999999999999999999999999999999887644 23344444457778999999999999
Q ss_pred chhhhhhhccccEEEEEcC-ceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeecCCCCCCCCCh
Q 006153 177 GSGGALAIGCANKLLMLEN-AVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIPEPLGGAHADP 252 (658)
Q Consensus 177 ~GGGAlalg~aD~ViA~p~-A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIpe~~ggah~dp 252 (658)
.+||+|..+++|+.+|..+ ++++..+|.. ++...-++|+.|++|||...+
T Consensus 200 t~gg~y~pAm~d~~~~vk~~s~lfl~gp~l--------------------------Vka~tnEevsqedlgga~~hc 250 (536)
T KOG0540|consen 200 TAGGAYVPAMADETIMVKDTSTLFLAGPPL--------------------------VKAATNEEVSQEDLGGADLHC 250 (536)
T ss_pred cCCceecccccceeEEecCcceEEecCCch--------------------------hhhhccceeehhhcCCcceee
Confidence 9999999999999999987 8999999984 334455677888888886654
No 27
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=99.79 E-value=1.1e-18 Score=176.90 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=139.3
Q ss_pred CCceEEEEEEE-CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHH--HhhhcCCcEEEEecCCCCCCChhHHH
Q 006153 71 DPAIVTGIGSM-DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMY--YADHHGFPIVTFIDTPGAYADLKSEE 147 (658)
Q Consensus 71 D~aVVtG~GrI-~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~--lAdk~~lPIV~LiDTpGa~~g~~aE~ 147 (658)
+..++.|-+.. +|+++.||++.. .|.+|-..+-..++.+. .....++|||+++||||+.+|...|.
T Consensus 16 ~~~v~~g~~~~~~~~~iaVvg~~~-----------~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEl 84 (234)
T PF06833_consen 16 SVQVLDGEAGGEDGRFIAVVGDAN-----------HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREEL 84 (234)
T ss_pred ccceEEeeccccCCcEEEEEecCC-----------CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHH
Confidence 46789999988 899999999864 47788666555555553 34567899999999999999999999
Q ss_pred hchHHHHHHHHHHH---hcCCCCEEEEEcCCCchhhhhhhcc-ccEEEEEcCceEEEeCHHHHHHHhhhhccCchHHHHh
Q 006153 148 LGQGEAIAHNLRTM---FGLKVPIISIVIGEGGSGGALAIGC-ANKLLMLENAVFYVASPEACAAILWKSAKASPKAAEK 223 (658)
Q Consensus 148 ~Gq~~aiA~~l~al---s~a~VPiISVViG~a~GGGAlalg~-aD~ViA~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~ 223 (658)
+|+..++|+...++ ...++|+|++|+|++.|||++++|+ +|.+||+|++.+.+|+.+++|+|+.++.+.+++.++.
T Consensus 85 lGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~ga~i~vM~~~s~ARVTk~~ve~Le~la~s 164 (234)
T PF06833_consen 85 LGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPGAMIHVMGKPSAARVTKRPVEELEELAKS 164 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCCCeeecCChHHhHHHhhcCHHHHHHHhhc
Confidence 99998888777655 4579999999999999999999986 9999999999999999999999999999999998888
Q ss_pred hccc---HHHHHHcCCceeeecC
Q 006153 224 LKIT---GSELCKLQIADGVIPE 243 (658)
Q Consensus 224 ~kit---A~dL~~~GlVD~IIpe 243 (658)
.+.. .++++++|.++.+++-
T Consensus 165 ~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 165 VPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred CCCcCCCHHHHHHhccHHHHhcc
Confidence 7655 4778999999999953
No 28
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=99.40 E-value=1.9e-12 Score=132.60 Aligned_cols=163 Identities=19% Similarity=0.313 Sum_probs=128.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC-CCC-ChhHH----Hh------ch---HHHHH---HHHHHHhcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG-AYA-DLKSE----EL------GQ---GEAIA---HNLRTMFGLK 165 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG-a~~-g~~aE----~~------Gq---~~aiA---~~l~als~a~ 165 (658)
...+++.+.|.-+.|++..|+...--.++++-+.| ++. |.+.. .. +. ...+. -.+.++..++
T Consensus 28 k~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~ 107 (266)
T KOG0016|consen 28 KKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFP 107 (266)
T ss_pred ccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCC
Confidence 67899999999999999988876653555554444 332 22111 00 11 11122 2567888999
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcC
Q 006153 166 VPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQ 235 (658)
Q Consensus 166 VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~G 235 (658)
.|+|++|+||++|-|+..+++||+|||.+.++|.+ .+||||++++++...+...|.|++ +++|.+++..|
T Consensus 108 Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~g 187 (266)
T KOG0016|consen 108 KPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKG 187 (266)
T ss_pred CCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcC
Confidence 99999999999999999999999999999999877 789999999999999888888875 89999999999
Q ss_pred CceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 236 IADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 236 lVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+|+.|++. ..+.+.+...+.++++++|..++
T Consensus 188 lVskif~~-------------~tf~~~v~~~ikq~s~l~p~sl~ 218 (266)
T KOG0016|consen 188 LVSKIFPA-------------ETFNEEVLKKIKQYSKLSPESLL 218 (266)
T ss_pred chhhhcCh-------------HHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999953 36777788888999999988744
No 29
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=8.5e-11 Score=120.43 Aligned_cols=163 Identities=17% Similarity=0.156 Sum_probs=118.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc--------hHHHHHHHHHHHhcCCCCEEEEEc
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG--------QGEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G--------q~~aiA~~l~als~a~VPiISVVi 173 (658)
...++++.......++++.++ ...+-+|.|...+++++ |.+..... ....+...+..+..+++|+|+.|.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (251)
T PRK06023 26 KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVD 105 (251)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeC
Confidence 457899999999999997665 45678888888877655 43332211 112233455677789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeeecC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVIPE 243 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~IIpe 243 (658)
|.|+|||+..+..||++||.++++|++ +.|.++....++...+...+.+.+ .+++++++++|+||+|+|.
T Consensus 106 G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 185 (251)
T PRK06023 106 GLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE 185 (251)
T ss_pred CceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH
Confidence 999999999999999999999998866 346655555555444444444433 6899999999999999953
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 244 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 244 ~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+ .+..........|...|+..+.
T Consensus 186 ~-------------~l~~~a~~~a~~l~~~~~~a~~ 208 (251)
T PRK06023 186 E-------------AVEAETLKAAEELAAKPPQALQ 208 (251)
T ss_pred H-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 2 3444555666778888887643
No 30
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.29 E-value=3.8e-11 Score=121.83 Aligned_cols=176 Identities=16% Similarity=0.143 Sum_probs=125.6
Q ss_pred ECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhc-CCcEEEEecCCCCCC-ChhHHHh---------c
Q 006153 81 MDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEEL---------G 149 (658)
Q Consensus 81 I~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~-~lPIV~LiDTpGa~~-g~~aE~~---------G 149 (658)
++|.-..|.-+++. ...++++........+++.++.. ++-+|++..++++++ |.+.... .
T Consensus 4 ~~~~v~~i~ln~p~---------~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~ 74 (245)
T PF00378_consen 4 IEDGVATITLNRPE---------KRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEARE 74 (245)
T ss_dssp EETTEEEEEEECGG---------GTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHH
T ss_pred EECCEEEEEECCCC---------CCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccc
Confidence 44555556666653 46789999999999999887654 445888888787666 5443222 2
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh
Q 006153 150 QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK 223 (658)
Q Consensus 150 q~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~ 223 (658)
....+..++..+..+++|+|++|.|.|+|||+..+..||++||.+++.|++ +.|.+....++....+...+.+.
T Consensus 75 ~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l 154 (245)
T PF00378_consen 75 FFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRAREL 154 (245)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccc
Confidence 234566667778889999999999999999999999999999999999876 44544444444433333333333
Q ss_pred ----hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 224 ----LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 224 ----~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
..++|++++++|+||.|+|.+ .|........+.+...|+..+
T Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a~~~a~~l~~~~~~a~ 200 (245)
T PF00378_consen 155 LLTGEPISAEEALELGLVDEVVPDE-------------ELDEEALELAKRLAAKPPSAL 200 (245)
T ss_dssp HHHTCEEEHHHHHHTTSSSEEESGG-------------GHHHHHHHHHHHHHTSCHHHH
T ss_pred ccccccchhHHHHhhcceeEEcCch-------------hhhHHHHHHHHHHhcCCHHHH
Confidence 379999999999999999653 255556666677777777653
No 31
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=1.4e-10 Score=119.32 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=115.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEEEc
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEELG---------QGEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~G---------q~~aiA~~l~als~a~VPiISVVi 173 (658)
...++++..+....++++.++ ..+-+|.|...+.+++ |.+..... ....+...+..+..+++|+|+.|.
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 100 (255)
T PRK08150 22 KRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH 100 (255)
T ss_pred cccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 457899999999999998877 6778888888765444 43322211 011233445667789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||.|+|.
T Consensus 101 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK08150 101 GAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPA 180 (255)
T ss_pred CEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCc
Confidence 999999999999999999999998877 34555554444444444444443 37899999999999999964
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 244 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 244 ~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
. .+..........|...|+..+
T Consensus 181 ~-------------~l~~~a~~~a~~la~~~~~a~ 202 (255)
T PRK08150 181 G-------------EALDKAMELARRIAQNAPLTN 202 (255)
T ss_pred h-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 2 233334445567777787764
No 32
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.28 E-value=1.3e-10 Score=119.32 Aligned_cols=162 Identities=13% Similarity=0.106 Sum_probs=113.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHhc--------hHHH----HHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEELG--------QGEA----IAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~G--------q~~a----iA~~l~als~a~VPiIS 170 (658)
..+++++..+....++++.++...+-+|.|...+.+++ |.+..... .... +..++..+..+++|+|+
T Consensus 19 ~~Nal~~~~~~~l~~~l~~~~~d~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 98 (256)
T TIGR02280 19 KLNSFTAEMHLELREALERVERDDARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVC 98 (256)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCcEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 34689999999999999887655577888887765554 43322211 0011 12334567789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 240 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~I 240 (658)
.|.|.|+|||+..+..||++||.+++.|+. +.|.++.....+...+...+.++ ..+++++++++|+||+|
T Consensus 99 av~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 178 (256)
T TIGR02280 99 AVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQV 178 (256)
T ss_pred EECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccee
Confidence 999999999999999999999999998875 34554444444444444444443 37999999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 241 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 241 Ipe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
+|.+ .+..........+...|+..+
T Consensus 179 v~~~-------------~l~~~a~~~a~~la~~~~~~~ 203 (256)
T TIGR02280 179 VDDA-------------ALMDEAQALAVHLAAQPTRGL 203 (256)
T ss_pred eChH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 9532 344455555677777787754
No 33
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=1.3e-10 Score=119.54 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=113.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHhc-------------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEELG-------------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~G-------------q~~aiA~~l~als~a~VPiI 169 (658)
...++++..+.....+++.++...+.+|.|...+.+++ |.+..... ....+...+..+..+++|+|
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 103 (262)
T PRK08140 24 KLNSFTREMHRELREALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVI 103 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 34789999999999999877755678888887765544 43322210 00112234556778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.++++|+. +.|..+....++...+...+.+. ..+++++++++|+||+
T Consensus 104 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK08140 104 AAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWR 183 (262)
T ss_pred EEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccE
Confidence 9999999999999999999999999998864 23444444444444444444443 3689999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|.+ .+..........|...|+..+.
T Consensus 184 vv~~~-------------~l~~~a~~~a~~ia~~~~~a~~ 210 (262)
T PRK08140 184 VVDDA-------------ALADEAQQLAAHLATQPTRGLA 210 (262)
T ss_pred eeChH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 99532 2344455556677777877543
No 34
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=99.27 E-value=2.6e-12 Score=152.13 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=151.4
Q ss_pred hccCChhhH-hhhcCCCCCCC-HHHHHh----------hhcc--cceEccCCCCCCCCCceEEEEEEECCeEEEEEeeec
Q 006153 28 YTHLTPIQR-VNIARHPNRPT-FLDHVF----------NITE--KFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQK 93 (658)
Q Consensus 28 ~~~lt~wer-v~~ar~~~Rp~-are~I~----------~L~D--~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~ 93 (658)
+..+++|+| |.+....+-|| +|..|+ .||| +|.|+-++|+ .+||+|.||++|.||||||.+.
T Consensus 1783 l~~~D~~dR~vef~p~~q~~yD~Rwli~G~~~~~~~~~GlFDk~SF~Eil~~WA----ktVV~GRArLgGIPvGVIavEt 1858 (2196)
T KOG0368|consen 1783 LEPKDPPDRDVEFVPSTQNPYDPRWLIAGKNDSTGWLSGLFDKGSFDEILSGWA----KTVVTGRARLGGIPVGVIAVET 1858 (2196)
T ss_pred cCCCCCcccceeccCCCCCCCCHHHHhcCCcCCCccccccccCccHHHHHhHHh----hHheecceecCCcceEEEEEEe
Confidence 455689998 55555546677 777664 4898 8999999998 9999999999999999999986
Q ss_pred CCC------------cccc-ccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHH
Q 006153 94 GRN------------TKEN-IQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRT 160 (658)
Q Consensus 94 ~~~------------~~e~-~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~a 160 (658)
.+. ..+. ++..|..|+|.++-|.++++...++.++|+++|.++-||..|......+....++..+.+
T Consensus 1859 rtve~~vPADPan~dS~e~i~q~AGQVWyPdSAfKTaQAInDFNrEqLPLmIiAnwRGFSGGqkDMy~~VLkfGa~IVDa 1938 (2196)
T KOG0368|consen 1859 RTVENIVPADPANLDSEEQITQEAGQVWYPDSAFKTAQAINDFNREQLPLMIIANWRGFSGGQKDMYDQVLKFGAYIVDA 1938 (2196)
T ss_pred eeeeeeccCCCCCCCcHhhhhhcCCceecCchHHHHHHHHhhhccccCCeEEeecccccCccchHHHHHHHHHHHHHHHH
Confidence 541 2233 577788999999999999999888899999999999999999888878888999999999
Q ss_pred HhcCCCCEEEEEc--CCCchhhhhhhc----cccEE--EEEcCceEEEeCHHHHHHHhhhhc
Q 006153 161 MFGLKVPIISIVI--GEGGSGGALAIG----CANKL--LMLENAVFYVASPEACAAILWKSA 214 (658)
Q Consensus 161 ls~a~VPiISVVi--G~a~GGGAlalg----~aD~V--iA~p~A~i~VmgPEgaAsIl~rd~ 214 (658)
++....|++..|. |+ .-||+|... .+|++ ||-..++-+|+-|+|+..|.+|+.
T Consensus 1939 L~~YkQPv~vYIPp~gE-LRGGsWvVvD~tIn~~~memyAD~~sRggVLEPeg~v~IKfRre 1999 (2196)
T KOG0368|consen 1939 LRQYKQPVLVYIPPMGE-LRGGSWVVVDPTINPDQMEMYADEESRGGVLEPEGVVEIKFRRE 1999 (2196)
T ss_pred HHHhCCceEEEcCcchh-hcCceEEEEcCccCHHHHHHHhhhhhccccccCCceEEEEeeHH
Confidence 9999999999887 66 567888763 25554 555679999999999999998864
No 35
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=2.4e-10 Score=118.33 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=116.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc--------------------hHHHHHHHHHHH
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG--------------------QGEAIAHNLRTM 161 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G--------------------q~~aiA~~l~al 161 (658)
..+++++..+.-..++++.++. ..+.+|.|...+.+++ |.+..... ........+..+
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 105 (272)
T PRK06142 26 KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAV 105 (272)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 4578999999999999987764 4678899988775554 43322210 001122344556
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHH
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSEL 231 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL 231 (658)
..+++|+|++|.|.|+|||+..+..||++||.++++|++ +.|..+....++...+...+.++ ..++|+++
T Consensus 106 ~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA 185 (272)
T PRK06142 106 ADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEA 185 (272)
T ss_pred HhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHH
Confidence 778999999999999999999999999999999998866 44555554444444444445444 37899999
Q ss_pred HHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 232 CKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 232 ~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
+++|+||+|+|.+ + .+..........+...||..+..
T Consensus 186 ~~~GLv~~vv~~~--------~----~l~~~a~~~a~~ia~~~~~a~~~ 222 (272)
T PRK06142 186 EKIGLVNRVYDDA--------D----ALLAAAHATAREIAAKSPLAVRG 222 (272)
T ss_pred HHcCCccEecCCH--------H----HHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999531 1 24444555666777888876543
No 36
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.25 E-value=1.7e-10 Score=120.00 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=117.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh-c--------hH----HHHHHHHHHHhcCCCCE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-G--------QG----EAIAHNLRTMFGLKVPI 168 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~-G--------q~----~aiA~~l~als~a~VPi 168 (658)
..+++++....-..++++.++. ..+-+|.|...+++++ |.+.... + .. ..+..++..+..+++|+
T Consensus 28 ~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 107 (275)
T PRK09120 28 KRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPT 107 (275)
T ss_pred cccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 4578999999999999987754 5678888888776554 4332211 0 01 11223455677899999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCce
Q 006153 169 ISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIAD 238 (658)
Q Consensus 169 ISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD 238 (658)
|+.|.|.|+|||+..+..||++|++++|+|++ +.|.++...++....+...+.+. ..++|++++++|+|+
T Consensus 108 IAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~ 187 (275)
T PRK09120 108 IAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVN 187 (275)
T ss_pred EEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcc
Confidence 99999999999999999999999999998876 45665555555544455555543 378999999999999
Q ss_pred eeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 239 GVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 239 ~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+|+|.+ .|..........|...||..+.
T Consensus 188 ~vv~~~-------------~l~~~a~~~a~~la~~~p~a~~ 215 (275)
T PRK09120 188 ESVPLA-------------QLRARTRELAAKLLEKNPVVLR 215 (275)
T ss_pred eecCHH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 999532 3555566666778888887643
No 37
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.25 E-value=2.5e-10 Score=118.54 Aligned_cols=163 Identities=12% Similarity=0.151 Sum_probs=116.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc----------------h----HHHHHHHHHHH
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----------------Q----GEAIAHNLRTM 161 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G----------------q----~~aiA~~l~al 161 (658)
...++++..+....++++.++. ..+-+|+|..++.+++ |.+..... . .......+..+
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (275)
T PLN02664 28 QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAI 107 (275)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999987653 4678888888776554 43322110 0 01122344567
Q ss_pred hcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHH
Q 006153 162 FGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSEL 231 (658)
Q Consensus 162 s~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL 231 (658)
..+++|+|+.|.|.|+|||+..+..||++||.++++|++ +.|..+....++...+...+.+. ..++|+++
T Consensus 108 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA 187 (275)
T PLN02664 108 EQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEA 187 (275)
T ss_pred HhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHH
Confidence 789999999999999999999999999999999999877 45555555544555555555544 37899999
Q ss_pred HHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 232 CKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 232 ~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
+++|+||+|+|.+ ..+..++......|...||..+
T Consensus 188 ~~~GLv~~vv~~~------------~~l~~~~~~~a~~ia~~~p~a~ 222 (275)
T PLN02664 188 KELGLVSRVFGSK------------EDLDEGVRLIAEGIAAKSPLAV 222 (275)
T ss_pred HHcCCCceeeCCh------------hHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999531 1355556666677888888764
No 38
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=3.3e-10 Score=116.36 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=114.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc-------hHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG-------QGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G-------q~~aiA~~l~als~a~VPiISVViG 174 (658)
..++++...+....++++.++ ...+-+|.|..++++++ |.+..... ....+...+..+..+++|+|+.|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G 103 (257)
T PRK05862 24 ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAG 103 (257)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 357899999999999997665 44677888888776554 43322110 0122334556777899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|++ +.|.++....++...+...+.+++ .++|++++++|+||+|+|..
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 104 YALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred EEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHh
Confidence 99999999999999999999998876 446655555555444544444443 68999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........|...|+..+.
T Consensus 184 -------------~l~~~a~~~a~~l~~~~~~a~~ 205 (257)
T PRK05862 184 -------------KLLDEALAAATTIASFSLPAVM 205 (257)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 2333333445556667766543
No 39
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.9e-10 Score=116.68 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=112.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc------h---HHHHHHHH-HHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG------Q---GEAIAHNL-RTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G------q---~~aiA~~l-~als~a~VPiISV 171 (658)
..+++++..+....++++.+.. ..+-+|.|...+++++ |.+..... . .......+ ..+..+++|+|+.
T Consensus 19 ~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 98 (255)
T PRK06563 19 KRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVA 98 (255)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEE
Confidence 4578999999999999976654 4577888888776655 33322110 0 00111222 2466789999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ +.|.+++...++...+...+.+. ..+++++++++|+||+|+
T Consensus 99 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 178 (255)
T PRK06563 99 VQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVV 178 (255)
T ss_pred EcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEee
Confidence 99999999999999999999999998876 44655555555555555555544 378999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|.. .+..........+...|+..+
T Consensus 179 ~~~-------------~l~~~a~~~a~~la~~~~~a~ 202 (255)
T PRK06563 179 PPG-------------EQLERAIELAERIARAAPLGV 202 (255)
T ss_pred CHH-------------HHHHHHHHHHHHHHhcCHHHH
Confidence 532 233344445566777787764
No 40
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3.3e-10 Score=116.54 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=114.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------c--h----HHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G--Q----GEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------G--q----~~aiA~~l~als~a~VPiI 169 (658)
..+++++..+....++++.++. ..+.+|.|...+++++ |.+.... . . ...+...+..+..+++|+|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 103 (262)
T PRK05995 24 VRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVI 103 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEE
Confidence 3468999999999999987754 5678888888776555 4332211 0 0 1123445667778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.++++|++ +.|.++...+ ....+...+.+. ..++|++++++|+||+
T Consensus 104 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l-~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~ 182 (262)
T PRK05995 104 ARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYV-IRAMGERAARRYFLTAERFDAAEALRLGLVHE 182 (262)
T ss_pred EEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHH-HHHhCHHHHHHHHHcCCccCHHHHHHcCCCCe
Confidence 9999999999999999999999999998876 4455544443 333444445444 3789999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|.. .+..........+...|+..+.
T Consensus 183 vv~~~-------------~l~~~a~~~a~~la~~~~~a~~ 209 (262)
T PRK05995 183 VVPAE-------------ALDAKVDELLAALVANSPQAVR 209 (262)
T ss_pred ecCHH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 99532 3444455556677777877643
No 41
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=4.2e-10 Score=115.49 Aligned_cols=166 Identities=12% Similarity=0.078 Sum_probs=117.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------ch-------HHHHHHHHHHHhcCCCCE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQ-------GEAIAHNLRTMFGLKVPI 168 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------Gq-------~~aiA~~l~als~a~VPi 168 (658)
...++++..+....++++.+.. ..+.+|.|..++++++ |.+.... +. ...+...+..+..+++|+
T Consensus 22 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 101 (255)
T PRK07260 22 VSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPV 101 (255)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCE
Confidence 3467999999999999986654 5567888888776655 4332221 01 112234445677899999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCce
Q 006153 169 ISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIAD 238 (658)
Q Consensus 169 ISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD 238 (658)
|+.|.|.|+|||+..+..||++||++++.|+. +.|..+...++....+...+.++ .+++|++++++|+||
T Consensus 102 Iaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~ 181 (255)
T PRK07260 102 IMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVY 181 (255)
T ss_pred EEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcc
Confidence 99999999999999999999999999998876 33554454444444444444443 378999999999999
Q ss_pred eeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 006153 239 GVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 282 (658)
Q Consensus 239 ~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R 282 (658)
+|+|.. .+..........+...|+..+...+
T Consensus 182 ~vv~~~-------------~l~~~a~~~a~~la~~~~~a~~~~K 212 (255)
T PRK07260 182 RVAESE-------------KLEKTCEQLLKKLRRGSSNSYAAIK 212 (255)
T ss_pred eecCHh-------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999432 3455566666778888887654433
No 42
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.23 E-value=3.3e-10 Score=116.34 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=113.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc-------hHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG-------QGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G-------q~~aiA~~l~als~a~VPiISVViG 174 (658)
..+++++..+....++++.++. ..+.+|.|...+.+++ |.+..... ........+..+..+++|+|+.|.|
T Consensus 22 ~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK09674 22 ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNG 101 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4578999999999999987764 4577888887766554 43322211 0112234556677899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||.|+|..
T Consensus 102 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 102 YALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred EeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 99999999999999999999998866 44554444433333444444433 368999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........|...||..+.
T Consensus 182 -------------~~~~~a~~~a~~l~~~~~~a~~ 203 (255)
T PRK09674 182 -------------LTLERALQLASKIARHSPLALR 203 (255)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 2334455556777777877543
No 43
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3.2e-10 Score=116.72 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=115.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCC-CCC-CChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTP-GAY-ADLKSEELG---------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTp-Ga~-~g~~aE~~G---------q~~aiA~~l~als~a~VPiISV 171 (658)
..+++++..+....++++.++ ...+-+|.|..++ .++ .|.+..... ....+..++..+..+++|+|+.
T Consensus 27 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 106 (256)
T PRK06143 27 SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIAR 106 (256)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 457899999999999998765 4567788888876 333 354332211 0112233455677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ + |.+....+++...+...+.+. ..++|++++++|+||+|+
T Consensus 107 v~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 185 (256)
T PRK06143 107 IPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185 (256)
T ss_pred ECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeec
Confidence 99999999999999999999999988765 3 333344444444444444443 379999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 281 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~ 281 (658)
|.+ .+..........+...||..+...
T Consensus 186 ~~~-------------~l~~~a~~~a~~la~~~~~a~~~~ 212 (256)
T PRK06143 186 PLA-------------ELDAAVERLAASLAGCGPQALRQQ 212 (256)
T ss_pred CHH-------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 532 355556666777888888864443
No 44
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=4.9e-10 Score=115.20 Aligned_cols=162 Identities=16% Similarity=0.199 Sum_probs=112.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------------chHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------------GQGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------------Gq~~aiA~~l~als~a~VPiI 169 (658)
..+++++..+....++++.+.. ..+-+|.|...+.+++ |.+.... .....+..++..+..+++|+|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 102 (260)
T PRK07511 23 ARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVI 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 3468999999999999987764 4567888877665544 3322111 011223445566778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
++|.|.|+|||+..+..||++||+++|+|++ +.|.++....+....+...+.++ ..+++++++++|+||.
T Consensus 103 Aav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~ 182 (260)
T PRK07511 103 AAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNR 182 (260)
T ss_pred EEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccE
Confidence 9999999999999999999999999998876 44665555544444444444433 3799999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|+|.. .+..........+...|+..+
T Consensus 183 vv~~~-------------~~~~~a~~~a~~l~~~~~~~~ 208 (260)
T PRK07511 183 LAEPG-------------QALAEALALADQLAAGSPNAL 208 (260)
T ss_pred eeCch-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 99532 122223344556777777653
No 45
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.23 E-value=3.9e-10 Score=114.04 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=114.6
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh------c---hHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 106 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL------G---QGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~------G---q~~aiA~~l~als~a~VPiISVViG 174 (658)
.++++.....+...++.++ ..++.+|.|...+++++ |.+.... . ....+...+.++..+++|+|+.|.|
T Consensus 29 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G 108 (222)
T PRK05869 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG 108 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 7899999999999997655 46688888887766554 3322211 0 0112234556677899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||+|+|..
T Consensus 109 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 109 YALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred EeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 99999999999999999999998876 34555444434444444444443 379999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 281 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~ 281 (658)
.+..........+...|+..+...
T Consensus 189 -------------~l~~~a~~~a~~ia~~~~~a~~~~ 212 (222)
T PRK05869 189 -------------DVYDAAAAWARRFLDGPPHALAAA 212 (222)
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445566677888888765443
No 46
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=4.3e-10 Score=116.97 Aligned_cols=163 Identities=14% Similarity=0.079 Sum_probs=113.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh-c------------hHHHHHHHHHHHhcCCCCE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL-G------------QGEAIAHNLRTMFGLKVPI 168 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~-G------------q~~aiA~~l~als~a~VPi 168 (658)
...++++........+++.++ ...+-+|+|...+.+++ |.+.... + ....+..++..+..+++|+
T Consensus 37 ~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 116 (277)
T PRK08258 37 RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPI 116 (277)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 457889999999999987765 45677888887765544 3332221 0 1111234556677899999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcCceEEE------eC-HHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCc
Q 006153 169 ISIVIGEGGSGGALAIGCANKLLMLENAVFYV------AS-PEACAAILWKSAKASPKAAEK----LKITGSELCKLQIA 237 (658)
Q Consensus 169 ISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mg-PEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlV 237 (658)
|++|.|.|+|||+..+..||++||.++++|++ +. |..+...++....+...+.+. ..+++++++++|+|
T Consensus 117 IAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv 196 (277)
T PRK08258 117 IAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196 (277)
T ss_pred EEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCC
Confidence 99999999999999999999999999998865 22 344444444444444444443 37899999999999
Q ss_pred eeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 238 DGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 238 D~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|+|.. .+..........|...|+..+.
T Consensus 197 ~~vv~~~-------------~l~~~a~~~a~~la~~~~~a~~ 225 (277)
T PRK08258 197 NRLVEPE-------------ELLAEAQALARRLAAGPTFAHG 225 (277)
T ss_pred cEecCHH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 9999532 3444555556777788877643
No 47
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.8e-10 Score=116.41 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=112.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhc-C-CcEEEEecCCCCCC-ChhHHHh-------------c--hHHHHHHHHHHHhcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADHH-G-FPIVTFIDTPGAYA-DLKSEEL-------------G--QGEAIAHNLRTMFGLK 165 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~-~-lPIV~LiDTpGa~~-g~~aE~~-------------G--q~~aiA~~l~als~a~ 165 (658)
..+++++..+....++++.+... . +-+|.|...+++++ |.+.... + ....+...+.++..++
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (266)
T PRK05981 24 VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLP 103 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999999877653 3 77888887776554 4332211 0 0111234556777899
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcC
Q 006153 166 VPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQ 235 (658)
Q Consensus 166 VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~G 235 (658)
+|+|++|.|.|+|||+..+..||++||.++++|+. +.|.++...+.+...+...+.++ ..+++++++++|
T Consensus 104 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~G 183 (266)
T PRK05981 104 CPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWG 183 (266)
T ss_pred CCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcC
Confidence 99999999999999999999999999999998865 44554444444433333334333 368999999999
Q ss_pred CceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 236 IADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 236 lVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
+||.|+|.. .+..........+...|+..+..
T Consensus 184 lv~~vv~~~-------------~~~~~a~~~a~~l~~~~~~a~~~ 215 (266)
T PRK05981 184 LVNRVVDDA-------------ELMAEAMKLAHELANGPTVALGL 215 (266)
T ss_pred CceEeeCHh-------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999542 22333444556667777755433
No 48
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3.6e-10 Score=117.01 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=115.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh----c-------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 105 FGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL----G-------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~----G-------q~~aiA~~l~als~a~VPiISV 171 (658)
.+++++..+.....++..++. ..+-+|.|...+++++ |.+.... + ....+..++..+..+++|+|+.
T Consensus 33 ~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 33 LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468899999999999976654 4577888887776554 3332211 0 1112234556677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ +.|..+....++...+...+.+.+ +++|++++++|+||+|+
T Consensus 113 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 192 (268)
T PRK07327 113 IHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAV 192 (268)
T ss_pred EcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceec
Confidence 99999999999999999999999998875 445555555555545555555443 79999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|.+ .+..........|.+.|+..+.
T Consensus 193 ~~~-------------~l~~~a~~~a~~la~~~~~a~~ 217 (268)
T PRK07327 193 DDD-------------ELLPKALEVAERLAAGSQTAIR 217 (268)
T ss_pred CHH-------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 432 3444455556778888887644
No 49
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.22 E-value=4.1e-10 Score=115.86 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=115.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CC-CChhHHHh-c-------hHHHHHHHHHHHhcCCCCEEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AY-ADLKSEEL-G-------QGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~-~g~~aE~~-G-------q~~aiA~~l~als~a~VPiISVV 172 (658)
...+++...+....++++.++ ...+-+|.|..+++ ++ .|.+.... + ....+...+..+..+++|+|+.|
T Consensus 22 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 101 (256)
T TIGR03210 22 KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARV 101 (256)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 457899999999999998775 45577888887763 33 34433221 0 11122334566778999999999
Q ss_pred cCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeec
Q 006153 173 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 242 (658)
Q Consensus 173 iG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIp 242 (658)
.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..++|++++++|+||+|+|
T Consensus 102 ~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~ 181 (256)
T TIGR03210 102 QGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVP 181 (256)
T ss_pred CCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeC
Confidence 9999999999999999999999998876 22333333334444455555444 3789999999999999995
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 243 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 243 e~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
.. .+..........|...|+..+..
T Consensus 182 ~~-------------~l~~~a~~~a~~ia~~~~~a~~~ 206 (256)
T TIGR03210 182 HD-------------QLDAEVQKWCDEIVEKSPTAIAI 206 (256)
T ss_pred HH-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 32 35555666677788888876533
No 50
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=4.2e-10 Score=116.03 Aligned_cols=162 Identities=12% Similarity=0.151 Sum_probs=114.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------c------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------G------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------G------q~~aiA~~l~als~a~VPiI 169 (658)
...++++..+....++++.++. ..+-+|.|...+.+++ |.+.... + ....+..++..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (262)
T PRK07468 25 KHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLI 104 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence 4578999999999999987754 4567888887766554 4332211 0 01123345567778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
++|.|.|+|||+..+..||++||+++++|++ +.|.++...+.+. .+...+.++ .++++++++++|+||+
T Consensus 105 aav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~~lll~g~~~~a~eA~~~Glv~~ 183 (262)
T PRK07468 105 GRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSR 183 (262)
T ss_pred EEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHHHHHHhCCccCHHHHHHcCCcce
Confidence 9999999999999999999999999998876 4465555444333 444455444 3789999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|.. .+..........+.+.||..+.
T Consensus 184 v~~~~-------------~l~~~~~~~a~~l~~~~~~a~~ 210 (262)
T PRK07468 184 VVPAE-------------RLDAAVEAEVTPYLSCAPGAVA 210 (262)
T ss_pred ecCHH-------------HHHHHHHHHHHHHHhcCHHHHH
Confidence 99532 3444555556667777777543
No 51
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.21 E-value=3e-10 Score=117.21 Aligned_cols=175 Identities=10% Similarity=0.090 Sum_probs=117.7
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCC--CCCC-ChhHHHh--------ch
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTP--GAYA-DLKSEEL--------GQ 150 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTp--Ga~~-g~~aE~~--------Gq 150 (658)
+|.-+.|.-|++. ..+++++..+.....+++.+++..+.+|+|...+ .+++ |.+.... ..
T Consensus 11 ~~~v~~itlnrp~---------~~Nal~~~~~~~l~~al~~~~~d~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~ 81 (261)
T PRK11423 11 INKIATITFNNPA---------KRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSY 81 (261)
T ss_pred ECCEEEEEEcCcc---------ccCCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCCCeeECCcCHHHHhhccccHHHH
Confidence 3444445555553 4578999999999999987766557777777542 2333 4333221 11
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh-
Q 006153 151 GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK- 223 (658)
Q Consensus 151 ~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~- 223 (658)
...+...+..+..+++|+|+.|.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+.
T Consensus 82 ~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~ 161 (261)
T PRK11423 82 DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMF 161 (261)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHH
Confidence 12233455667789999999999999999999888999999999998865 33444444444444444444443
Q ss_pred ---hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 224 ---LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 224 ---~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
.+++|++++++|+||.|+|.. .+........+.|...|+..+
T Consensus 162 l~g~~~~a~eA~~~GLv~~vv~~~-------------~l~~~a~~~a~~l~~~~~~a~ 206 (261)
T PRK11423 162 FTASPITAQRALAVGILNHVVEVE-------------ELEDFTLQMAHHISEKAPLAI 206 (261)
T ss_pred HcCCCcCHHHHHHcCCcCcccCHH-------------HHHHHHHHHHHHHHhcCHHHH
Confidence 378999999999999999532 344445555566777777764
No 52
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.21 E-value=4.6e-10 Score=116.14 Aligned_cols=162 Identities=13% Similarity=0.199 Sum_probs=115.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc------------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG------------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G------------q~~aiA~~l~als~a~VPiI 169 (658)
...++++.......++++.++. ..+-+|.|...+++++ |.+..... ....+..++..+..+++|+|
T Consensus 26 ~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 105 (265)
T PRK05674 26 KNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTL 105 (265)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEE
Confidence 3468899999999999987654 4567888888776554 43322110 01223455667788999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.++++|++ +.|.++...+. ...+...+.+. ..++|++++++|+||+
T Consensus 106 aaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~-~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 184 (265)
T PRK05674 106 AVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVV-KAIGERAARRYALTAERFDGRRARELGLLAE 184 (265)
T ss_pred EEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHH-HHhCHHHHHHHHHhCcccCHHHHHHCCCcce
Confidence 9999999999999999999999999998876 55655544433 23344444443 3789999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|.. .|..........+...||..+.
T Consensus 185 vv~~~-------------~l~~~a~~~a~~la~~~p~a~~ 211 (265)
T PRK05674 185 SYPAA-------------ELEAQVEAWIANLLLNSPQALR 211 (265)
T ss_pred ecCHH-------------HHHHHHHHHHHHHHhcCHHHHH
Confidence 99532 3445566666777788887644
No 53
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=4.7e-10 Score=115.44 Aligned_cols=161 Identities=7% Similarity=0.046 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-ChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEEEc
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEELG---------QGEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTp-Ga~~-g~~aE~~G---------q~~aiA~~l~als~a~VPiISVVi 173 (658)
.++++..+....+++..++. ..+-+|.|..++ .+++ |.+..... ....+...+..+..+++|+|+.|.
T Consensus 24 Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 24 NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 68899999999999987654 567888888766 3333 43322211 111233455677789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
|.|+|||+..+..||++||.++++|++ +.|.++.+..+....+...+.+. ..+++++++++|+||+|+|.
T Consensus 104 G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (258)
T PRK09076 104 GYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK 183 (258)
T ss_pred CEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc
Confidence 999999999999999999999998876 44665555555555555545444 37899999999999999964
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 244 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 244 ~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
. .+..........|...|+..+.
T Consensus 184 ~-------------~l~~~a~~~a~~l~~~~~~a~~ 206 (258)
T PRK09076 184 G-------------EAREAALALAQKVANQSPSAVA 206 (258)
T ss_pred h-------------hHHHHHHHHHHHHHhCCHHHHH
Confidence 2 2233344456677777877643
No 54
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.5e-10 Score=115.16 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=112.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh--------chHHHHHHHHHHHhcCCCCEEEEEc
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~--------Gq~~aiA~~l~als~a~VPiISVVi 173 (658)
..+++++.......++++.++. ..+.+|.|..++++++ |.+.... .....+...+..+..+++|+|++|.
T Consensus 25 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 25 KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3468899999999999986654 4678888887776554 4332211 0122334556677789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
|.|+|||+..+..||++||.++++|++ +.|.++.........+...+.+. ..+++++++++|+||+|+|.
T Consensus 105 G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 184 (259)
T PRK06688 105 GPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA 184 (259)
T ss_pred CeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH
Confidence 999999999999999999999998876 44554444444433344344333 37999999999999999953
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 244 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 244 ~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
. .+..........+...|+..+
T Consensus 185 ~-------------~l~~~a~~~a~~i~~~~~~a~ 206 (259)
T PRK06688 185 A-------------ELDAEADAQAAKLAAGPASAL 206 (259)
T ss_pred H-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 2 233334445556777777654
No 55
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.4e-10 Score=115.69 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=115.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CCC-ChhHHHh---------chHHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AYA-DLKSEEL---------GQGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~~-g~~aE~~---------Gq~~aiA~~l~als~a~VPiISV 171 (658)
...+++...+....++++.++ ...+-+|.|...++ +++ |.+.... .....+..++..+..+++|+|+.
T Consensus 24 ~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK07657 24 AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 457899999999999997665 45577888888775 444 4332221 01122344556777899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ +.|.++.+.......+...+.+. ..+++++++++|+||.|+
T Consensus 104 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK07657 104 INGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVV 183 (260)
T ss_pred EcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeec
Confidence 99999999999999999999999998866 34555544444444444444443 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|.. .+..........+...|+..+..
T Consensus 184 ~~~-------------~l~~~a~~~a~~l~~~~~~a~~~ 209 (260)
T PRK07657 184 PAH-------------LLEEKAIEIAEKIASNGPIAVRQ 209 (260)
T ss_pred CHH-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 532 23444555556677788776443
No 56
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.2e-10 Score=116.07 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=111.7
Q ss_pred cCCCCC-HHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc----------------hHHHHHHHHHHHhcC
Q 006153 104 NFGMPT-PHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----------------QGEAIAHNLRTMFGL 164 (658)
Q Consensus 104 ~gGsl~-p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G----------------q~~aiA~~l~als~a 164 (658)
..++++ +..+....++++.++. ..+.+|.|...+.+++ |.+..... ....+...+..+..+
T Consensus 23 ~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (266)
T PRK09245 23 TRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNL 102 (266)
T ss_pred cccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcC
Confidence 346787 4788888888876654 5678888887766554 43322110 001123345567789
Q ss_pred CCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHc
Q 006153 165 KVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKL 234 (658)
Q Consensus 165 ~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~ 234 (658)
++|+|+.|.|.|+|||...+..||++||.++++|++ +.|..+....+....+...+.+. ..++|++++++
T Consensus 103 ~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~ 182 (266)
T PRK09245 103 EVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEW 182 (266)
T ss_pred CCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHc
Confidence 999999999999999999999999999999998875 34554444433333333334333 37899999999
Q ss_pred CCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 235 QIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 235 GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|+||+|+|.. .+..........|...|+..+..
T Consensus 183 Glv~~vv~~~-------------~l~~~a~~~a~~l~~~~~~a~~~ 215 (266)
T PRK09245 183 GLVSRVVPAD-------------QLLPAARALAERIAANPPHALRL 215 (266)
T ss_pred CCcceecCHH-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999532 23444556667788888876433
No 57
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=5.8e-10 Score=115.50 Aligned_cols=164 Identities=10% Similarity=0.090 Sum_probs=115.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-ChhHHHhc-----------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEELG-----------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpG-a~~-g~~aE~~G-----------q~~aiA~~l~als~a~VPiI 169 (658)
..+++++..+.....+++.++. ..+-+|.|..+++ +++ |.+..... .......++..+..+++|+|
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 110 (269)
T PRK06127 31 RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTI 110 (269)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4578999999999999987764 4567888887763 443 43322110 11122334566778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||+
T Consensus 111 aav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 190 (269)
T PRK06127 111 ACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHR 190 (269)
T ss_pred EEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCE
Confidence 9999999999999999999999999998876 34555555544444455555544 3799999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|+|.. .+..........+...|+..+..
T Consensus 191 vv~~~-------------~l~~~a~~~a~~l~~~~~~a~~~ 218 (269)
T PRK06127 191 VTAAD-------------DLETALADYAATIAGNAPLTLRA 218 (269)
T ss_pred eeCHH-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 99532 34445555566677778776443
No 58
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=8.2e-10 Score=114.12 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=113.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc-------hHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG-------QGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G-------q~~aiA~~l~als~a~VPiISVViG 174 (658)
..+++++..+.....+++.++. ..+-+|.|..++.+++ |.+..... ....+...+..+..+++|+|+.|.|
T Consensus 24 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G 103 (258)
T PRK06190 24 ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAING 103 (258)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4578999999999999987754 4577888888765554 33322111 0112234556777899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||...+..||++||.+++.|++ +.|.......++...+...+.+. .+++|++++++|+||.|+|..
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 104 AAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred EeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 99999999999999999999998865 34554444444444444444443 378999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
.+..........|...|+..+
T Consensus 184 -------------~l~~~a~~~a~~la~~~~~a~ 204 (258)
T PRK06190 184 -------------ELLPRARRLAASIAGNNPAAV 204 (258)
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHH
Confidence 233344455566777787763
No 59
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=6.6e-10 Score=114.25 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=114.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-ChhHHHhch---------HHH----HHHHHHHHhcCCCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEELGQ---------GEA----IAHNLRTMFGLKVP 167 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpG-a~~-g~~aE~~Gq---------~~a----iA~~l~als~a~VP 167 (658)
...+++...+.-..++++.++. ..+-+|.|..+++ +++ |.+...... ... ...++..+..+++|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 102 (260)
T PRK05980 23 KLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKP 102 (260)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 3468999999999999987764 4678888888773 443 543322100 111 12344567778999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCc
Q 006153 168 IISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIA 237 (658)
Q Consensus 168 iISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlV 237 (658)
+|+.|.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+|
T Consensus 103 vIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv 182 (260)
T PRK05980 103 VIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLV 182 (260)
T ss_pred EEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCC
Confidence 999999999999999999999999999998866 44655555545544455555543 37999999999999
Q ss_pred eeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 238 DGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 238 D~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+|+|.. .+..........+...||..+.
T Consensus 183 ~~vv~~~-------------~l~~~a~~~a~~la~~~p~a~~ 211 (260)
T PRK05980 183 NAVVPHE-------------ELLPAARALARRIIRHSPVAVA 211 (260)
T ss_pred CcccCHH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 9999532 2333444555667777876543
No 60
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.19 E-value=6.5e-10 Score=114.30 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=112.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCC-CCCC-ChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTP-GAYA-DLKSEELG---------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTp-Ga~~-g~~aE~~G---------q~~aiA~~l~als~a~VPiISV 171 (658)
..+++++..+.-..++++.+. ...+-+|.|...+ ++++ |.+..... ........+..+..+++|+|+.
T Consensus 24 ~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 103 (260)
T PRK05809 24 ALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAA 103 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 346899999999999998765 3456788887766 4443 43322110 1112234556677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ +.|..+....+....+...+.+. ..+++++++++|+||+|+
T Consensus 104 v~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 183 (260)
T PRK05809 104 INGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVV 183 (260)
T ss_pred EcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCccc
Confidence 99999999999999999999999998876 44665555555444444444433 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|.. .+..........|...||..+
T Consensus 184 ~~~-------------~l~~~a~~~a~~la~~~~~a~ 207 (260)
T PRK05809 184 EPE-------------KLMEEAKALANKIAANAPIAV 207 (260)
T ss_pred ChH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 532 233445555566777776653
No 61
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=4.4e-10 Score=115.75 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=111.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHhc----------hHHHHHHHHHHHhcCCCCEEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~G----------q~~aiA~~l~als~a~VPiISVV 172 (658)
..+++++.......++++.+....+-+|.|...+++++ |.+..... ....+...+..+..+++|+|+.|
T Consensus 26 ~~Nal~~~~~~~l~~~l~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 26 ALNALDEPMLKELLQALKEVAESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45788999999999999877556678888888776544 43322210 01123344556777899999999
Q ss_pred cCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeec
Q 006153 173 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 242 (658)
Q Consensus 173 iG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIp 242 (658)
.|.|+|||+..+..||++||.+++.|++ +.|.++.....+...+...+.++ ..++|++++++|+||+|+
T Consensus 106 ~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv- 184 (260)
T PRK07659 106 HGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI- 184 (260)
T ss_pred cCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-
Confidence 9999999999999999999999998866 33443333333333334444433 378999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 243 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 243 e~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+. .+........+.+...|+..+.
T Consensus 185 ~~-------------~~~~~a~~~a~~l~~~~~~a~~ 208 (260)
T PRK07659 185 GG-------------DFQTAAKQKISEWLQKPLKAMI 208 (260)
T ss_pred hh-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 32 2333444555667777776543
No 62
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=9e-10 Score=113.10 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=111.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhch---HHHHHHHHHH--HhcCCCCEEEEEcCCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELGQ---GEAIAHNLRT--MFGLKVPIISIVIGEG 176 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~Gq---~~aiA~~l~a--ls~a~VPiISVViG~a 176 (658)
..+++++..+....++++.++. ..+.+|.|..++.+++ |.+...... .......+.. ...+++|+|+.|.|.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 102 (254)
T PRK08252 23 ARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYA 102 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence 4468999999999999987754 4678888888776554 433222110 0000111111 1357899999999999
Q ss_pred chhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCCCC
Q 006153 177 GSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPLG 246 (658)
Q Consensus 177 ~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~~g 246 (658)
+|||+..+..||++||.++++|++ +.|..+....+....+...+.+. .++++++++++|+||.|+|..
T Consensus 103 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-- 180 (254)
T PRK08252 103 LAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPG-- 180 (254)
T ss_pred ehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcc--
Confidence 999999999999999999998876 55665555555544555555544 378999999999999999642
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 247 GAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 247 gah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........+...|+..+.
T Consensus 181 -----------~l~~~a~~~a~~l~~~~~~a~~ 202 (254)
T PRK08252 181 -----------QALDAALELAERIAANGPLAVA 202 (254)
T ss_pred -----------hHHHHHHHHHHHHHhCCHHHHH
Confidence 2333344455667777777543
No 63
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.18 E-value=7.7e-10 Score=113.40 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=113.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh-----chHH-HHHHHHHHHhcCCCCEEEEEcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----GQGE-AIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~-----Gq~~-aiA~~l~als~a~VPiISVViG~ 175 (658)
...++++....-..++++.++. ..+.+|.|...+.+++ |.+.... +... ....++..+..+++|+|+.|.|.
T Consensus 25 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 104 (249)
T PRK07110 25 NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGH 104 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCc
Confidence 4478899999999999987654 4578888888776554 4332211 1100 01244566778999999999999
Q ss_pred CchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCCC
Q 006153 176 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 245 (658)
Q Consensus 176 a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~~ 245 (658)
|+|||+..+..||++||.++++|++ +.|..+...+++...+...+.+. ..+++++++++|+||.|+|.
T Consensus 105 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-- 182 (249)
T PRK07110 105 AIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPR-- 182 (249)
T ss_pred eechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh--
Confidence 9999999999999999999998765 34555555555544444445444 37899999999999999942
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 246 GGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 246 ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
. .+..........+.+.|+..+.
T Consensus 183 -------~----~l~~~a~~~a~~la~~~~~a~~ 205 (249)
T PRK07110 183 -------A----EVLEKALELARSLAEKPRHSLV 205 (249)
T ss_pred -------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 1 2333444455677777876543
No 64
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.18 E-value=7.2e-10 Score=114.23 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CC-CChhHHHhc------h--HHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 106 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AY-ADLKSEELG------Q--GEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~-~g~~aE~~G------q--~~aiA~~l~als~a~VPiISVViG 174 (658)
+++++..+....++++.++ ...+-+|.|..+++ ++ .|.+..... . .......+.++..+++|+|+.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (261)
T PRK03580 24 NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNG 103 (261)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECC
Confidence 6889999999999997665 44677888887764 33 354333211 0 011233456677899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|++ +.|..+....+....+...+.+. ..+++++++++|+||+|+|.+
T Consensus 104 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 104 YAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred eeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 99999999999999999999998876 44665555444444444444443 378999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
.+..........|...||..+
T Consensus 184 -------------~l~~~a~~~a~~la~~~~~a~ 204 (261)
T PRK03580 184 -------------ELMDRARELAQQLVNSAPLAI 204 (261)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHH
Confidence 344444555566777787754
No 65
>PLN02600 enoyl-CoA hydratase
Probab=99.18 E-value=8.9e-10 Score=113.06 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=112.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-ChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEELG---------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpG-a~~-g~~aE~~G---------q~~aiA~~l~als~a~VPiISV 171 (658)
...++++..+.-..++++.++. ..+-+|+|...+| +++ |.+..... ....+...+..+..+++|+|+.
T Consensus 15 ~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 94 (251)
T PLN02600 15 AKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAV 94 (251)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3468999999999999976654 4578888887643 333 43322210 1112233455677889999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+.....||++||.++++|++ +.|.++....++...+...+.++ ..+++++++++|+||+|+
T Consensus 95 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv 174 (251)
T PLN02600 95 VEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCV 174 (251)
T ss_pred ecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEee
Confidence 99999999999999999999999998876 45555555444444444444443 379999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|.+ .+..........|...|+..+
T Consensus 175 ~~~-------------~~~~~a~~~a~~la~~~p~a~ 198 (251)
T PLN02600 175 PAG-------------EAYEKALELAQEINQKGPLAI 198 (251)
T ss_pred Chh-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 542 233333445567778888764
No 66
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=7.1e-10 Score=114.31 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=100.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc-------hHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG-------QGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G-------q~~aiA~~l~als~a~VPiISVViG 174 (658)
...++++..+....++++.++ ...+-+|.|...+++++ |.+..... ....+..++..+..+++|+|+.|.|
T Consensus 28 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 107 (261)
T PRK08138 28 ARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNG 107 (261)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 347899999999999998765 45677888887665544 43322211 1122334556777899999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
.|+|||+..+..||++||.++++|++ +.|..+....+....+...+.+. ..+++++++++|+||.|+|.
T Consensus 108 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (261)
T PRK08138 108 YALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVED 186 (261)
T ss_pred EEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 99999999999999999999998875 34554444444444444444443 36899999999999999954
No 67
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.18 E-value=5.9e-10 Score=114.89 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=113.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCC-CCCC-ChhHHHhc------h----HHHHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTP-GAYA-DLKSEELG------Q----GEAIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTp-Ga~~-g~~aE~~G------q----~~aiA~~l~als~a~VPiIS 170 (658)
..+++++..+....++++.++ ...+.+|.|..++ .+++ |.+..... . .......+..+..+++|+|+
T Consensus 23 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 102 (259)
T TIGR01929 23 VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIA 102 (259)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 446899999999999997665 3457788888876 3443 43322110 0 01122344567788999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 240 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~I 240 (658)
.|.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||+|
T Consensus 103 av~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~v 182 (259)
T TIGR01929 103 MVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTV 182 (259)
T ss_pred EEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccc
Confidence 999999999999999999999999998876 34554444444444444444444 37999999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 241 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 241 Ipe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+|. . .+..........|...|+..+.
T Consensus 183 v~~---------~----~l~~~a~~~a~~la~~~~~a~~ 208 (259)
T TIGR01929 183 VPL---------A----DLEKETVRWCREILQKSPMAIR 208 (259)
T ss_pred cCH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 953 1 3444555666778888887643
No 68
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=8.9e-10 Score=112.67 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHH----hchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEE----LGQGEAIAHNLRTMFGLKVPIISIVIGEGGS 178 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~----~Gq~~aiA~~l~als~a~VPiISVViG~a~G 178 (658)
...++++..+....++++.++...+-+|.|...+.+++ |.+... ......+...+..+..+++|+|+.|.|.|+|
T Consensus 20 ~~Nal~~~~~~~l~~al~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G 99 (243)
T PRK07854 20 RRNALNAELCEELREAVRKAVDESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG 99 (243)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence 45789999999999999877666778888887665443 322111 1112223445566778899999999999999
Q ss_pred hhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeee
Q 006153 179 GGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVI 241 (658)
Q Consensus 179 GGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~II 241 (658)
||+..+..||++||.++++|++ +.|..+.....+...+...+.+.+ .++|++++++|+||+|+
T Consensus 100 gG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 100 AGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIG 172 (243)
T ss_pred cHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccccc
Confidence 9999999999999999998876 455555554444444554555443 78999999999999996
No 69
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=8.6e-10 Score=113.11 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc----------hHHHHHHHHHHHhcCCCCEEEEEc
Q 006153 106 GMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G----------q~~aiA~~l~als~a~VPiISVVi 173 (658)
+++++..+....++++.+. ...+.+|.|...+.+++ |.+..... ........+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 7899999999999997665 45678888887665444 33322110 112223455677789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeeecC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVIPE 243 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~IIpe 243 (658)
|.|+|||+..+..||++||.++++|++ +.|..+....+....+...+.+.+ .+++++++++|+||.|+|.
T Consensus 103 G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 182 (257)
T PRK07658 103 GAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE 182 (257)
T ss_pred CeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh
Confidence 999999999998999999999988866 335544444444444444444443 7899999999999999953
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 244 PLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 244 ~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
. .+..........+...||..+
T Consensus 183 ~-------------~l~~~a~~~a~~l~~~~~~a~ 204 (257)
T PRK07658 183 E-------------TLLDDAKKLAKKIAGKSPATT 204 (257)
T ss_pred h-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 2 233344445556667777653
No 70
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.2e-09 Score=114.78 Aligned_cols=139 Identities=18% Similarity=0.121 Sum_probs=100.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc----------------------hHHH----HH
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG----------------------QGEA----IA 155 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G----------------------q~~a----iA 155 (658)
..+++++..+.-..++++.++ ...+-+|+|...+.+++ |.+....+ .... ..
T Consensus 24 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (296)
T PRK08260 24 KLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGG 103 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHH
Confidence 457899999999999998775 35678888887766554 33222110 0011 12
Q ss_pred HHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----c
Q 006153 156 HNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----K 225 (658)
Q Consensus 156 ~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----k 225 (658)
..+..+..+++|+|+.|.|.|+|||+..+..||++||.++++|++ +.|..+...+.....+...+.+++ .
T Consensus 104 ~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~ 183 (296)
T PRK08260 104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRV 183 (296)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCc
Confidence 345567778999999999999999999999999999999998876 445555555444444554554443 6
Q ss_pred ccHHHHHHcCCceeeec
Q 006153 226 ITGSELCKLQIADGVIP 242 (658)
Q Consensus 226 itA~dL~~~GlVD~IIp 242 (658)
++|++++++|+||+|+|
T Consensus 184 ~~a~eA~~~GLv~~vv~ 200 (296)
T PRK08260 184 FDAQEALDGGLVRSVHP 200 (296)
T ss_pred cCHHHHHHCCCceeecC
Confidence 89999999999999995
No 71
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.16 E-value=1.2e-09 Score=113.10 Aligned_cols=163 Identities=12% Similarity=0.115 Sum_probs=111.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc----------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G----------q~~aiA~~l~als~a~VPiISV 171 (658)
..+++++.......++++.++. ..+-+|.|...+.+++ |.+..... ....+..++..+..+++|+|+.
T Consensus 31 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 110 (266)
T PRK08139 31 AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIAR 110 (266)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4478999999999999987654 4577888887765544 43322111 0112234556677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++|+.++++|++ +.|.+.. ..+....+...+.+. ..++|++++++|+||+|+
T Consensus 111 v~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv 189 (266)
T PRK08139 111 VHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVV 189 (266)
T ss_pred ECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEee
Confidence 99999999999999999999999998866 2233222 222222333444443 368999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|.. .+..........|...|+..+..
T Consensus 190 ~~~-------------~l~~~a~~~a~~la~~~~~a~~~ 215 (266)
T PRK08139 190 PAD-------------ALDAAVARLAAVIAAKSPAAVRI 215 (266)
T ss_pred Chh-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 532 34445555567777788776443
No 72
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.2e-09 Score=112.78 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=113.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-C-CCChhHHHh----------chHHHHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-A-YADLKSEEL----------GQGEAIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpG-a-~~g~~aE~~----------Gq~~aiA~~l~als~a~VPiIS 170 (658)
..++++...++....+++.++. ..+-+|.|..+++ + ..|.+.... .....+...+..+..+++|+|+
T Consensus 28 ~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 107 (262)
T PRK06144 28 ARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIA 107 (262)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4578899999999999987664 4577888887663 3 334432211 0111233445567789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEEe-----C--HHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYVA-----S--PEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~Vm-----g--PEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
.|.|.|+|||+..+..||++||.+++.|++- | |..+....++...+...+.+. ..++|++++++|+||+
T Consensus 108 av~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~ 187 (262)
T PRK06144 108 AIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNE 187 (262)
T ss_pred EECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCe
Confidence 9999999999999999999999999988652 1 333333344444444444443 2689999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|+|.. .+........+.+...|+..+..
T Consensus 188 vv~~~-------------~l~~~a~~~a~~i~~~~~~a~~~ 215 (262)
T PRK06144 188 VVEDA-------------ALDARADALAELLAAHAPLTLRA 215 (262)
T ss_pred ecCHH-------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 99431 34455556667788888876543
No 73
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.8e-09 Score=109.11 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHh--------chHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 106 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL--------GQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~--------Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
.++++..+.....+++.++ ....+|.+...+++++ |.+.... .....+...+..+...++|+|+.|.|.|
T Consensus 24 Nal~~~~~~~l~~~l~~~~-~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 102 (229)
T PRK06213 24 NALSPAMIDALNAALDQAE-DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHA 102 (229)
T ss_pred CCCCHHHHHHHHHHHHHhh-ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence 6889999999999998776 5567888888776655 4332221 1112233455667789999999999999
Q ss_pred chhhhhhhccccEEEEEcC-ceEEE-------eCHHHHHHHhhhhccCchHHH----HhhcccHHHHHHcCCceeeecCC
Q 006153 177 GSGGALAIGCANKLLMLEN-AVFYV-------ASPEACAAILWKSAKASPKAA----EKLKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 177 ~GGGAlalg~aD~ViA~p~-A~i~V-------mgPEgaAsIl~rd~~~~~eAa----E~~kitA~dL~~~GlVD~IIpe~ 244 (658)
+|||+..+..||++||.++ ++|++ ..|.+....+.+ ......+. ....+++++++++|+||+|+|..
T Consensus 103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~-~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARD-RLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHH-HcCHHHHHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 9999999999999999999 87765 233333332222 12222222 22378999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........+...|+..+.
T Consensus 182 -------------~l~~~a~~~a~~la~~~~~a~~ 203 (229)
T PRK06213 182 -------------QLLARAQAAARELAGLNMGAHA 203 (229)
T ss_pred -------------HHHHHHHHHHHHHhcCCHHHHH
Confidence 2344455555667778877643
No 74
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.6e-09 Score=111.50 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=110.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CCC-ChhHHHhc------h-HHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 105 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AYA-DLKSEELG------Q-GEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~~-g~~aE~~G------q-~~aiA~~l~als~a~VPiISVViG 174 (658)
..++++....-..++++.++ ...+.+|.|..+++ +++ |.+..... . ...+. .+..+..+++|+|+.|.|
T Consensus 25 ~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~kPvIaav~G 103 (259)
T PRK06494 25 MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFG-GLTSRFDLDKPIIAAVNG 103 (259)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHH-HHHHHhcCCCCEEEEECC
Confidence 46899999999999998665 44578888888764 333 44332210 1 11122 233345789999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..++|++++++|+||+|+|..
T Consensus 104 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 104 VAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred EEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 99999999999999999999998877 44555554444444454445443 368999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........|...|+..+.
T Consensus 184 -------------~l~~~a~~~a~~la~~~~~a~~ 205 (259)
T PRK06494 184 -------------ELLAAAERWADDILACSPLSIR 205 (259)
T ss_pred -------------HHHHHHHHHHHHHHhcCHHHHH
Confidence 2333444555667777777644
No 75
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.6e-09 Score=112.75 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=112.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc----------------hHHHHHHHHHHHhcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----------------QGEAIAHNLRTMFGLK 165 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G----------------q~~aiA~~l~als~a~ 165 (658)
..++++...++...++++.++. ..+-+|.|...+.+++ |.+....+ ....+...+..+..++
T Consensus 30 ~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (276)
T PRK05864 30 RMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLH 109 (276)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 3478999999999999987654 4578888887665554 33222110 0112234455677899
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCH-HHHHHHhhhhccCchHHHHh----hcccHHHHHHc
Q 006153 166 VPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASP-EACAAILWKSAKASPKAAEK----LKITGSELCKL 234 (658)
Q Consensus 166 VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgP-EgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~ 234 (658)
+|+|+.|.|.|+|||+..+..||++||.++++|++ +.| ..+...+.+...+...+.+. .+++|++++++
T Consensus 110 kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~ 189 (276)
T PRK05864 110 QPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189 (276)
T ss_pred CCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHc
Confidence 99999999999999999999999999999998765 233 44444434444444444443 36899999999
Q ss_pred CCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 235 QIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 235 GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
|+||+|+|. . .+..........|...||..+.
T Consensus 190 Glv~~vv~~---------~----~l~~~a~~~a~~la~~~p~a~~ 221 (276)
T PRK05864 190 GLVSRQVPD---------E----QLLDTCYAIAARMAGFSRPGIE 221 (276)
T ss_pred CCcceeeCH---------H----HHHHHHHHHHHHHHhCCHHHHH
Confidence 999999943 2 2334455556777788877644
No 76
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.2e-09 Score=112.48 Aligned_cols=164 Identities=16% Similarity=0.122 Sum_probs=110.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhch-----HH--HHHHHHHHHhcCCCCEEEEEcC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELGQ-----GE--AIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~Gq-----~~--aiA~~l~als~a~VPiISVViG 174 (658)
..+++++..+.....+++.++. ..+-+|.|...+.+++ |.+...... .. ........+..+++|+|+.|.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G 102 (254)
T PRK08259 23 VRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSG 102 (254)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECC
Confidence 4578999999999999987654 4566788877665544 433222110 00 0011112223689999999999
Q ss_pred CCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 175 EGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 175 ~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|+|||+..+..||++||.++++|+. +.|..+.........+...+.+. ..++|++++++|+||+|+|..
T Consensus 103 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 103 YAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKG 182 (254)
T ss_pred EEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChh
Confidence 99999999999999999999998865 33544444444433444444443 369999999999999999542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
.+..........|...|+..+..
T Consensus 183 -------------~l~~~a~~~a~~la~~~~~a~~~ 205 (254)
T PRK08259 183 -------------QARAAAEELAAELAAFPQTCLRA 205 (254)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445556667788888886543
No 77
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.6e-09 Score=111.76 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=110.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh-----c-hHH---H-H--HHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----G-QGE---A-I--AHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~-----G-q~~---a-i--A~~l~als~a~VPiI 169 (658)
...+++...++...++++.++. ..+-+|.|...+.+++ |.+.... + ... . . ...+..+..+++|+|
T Consensus 25 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 104 (263)
T PRK07799 25 ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLI 104 (263)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEE
Confidence 3478999999999999987764 4577888888775554 4332211 0 000 0 0 111233457899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.++++|+. +.|.++....+....+...+.+. ..++|++++++|+||+
T Consensus 105 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 184 (263)
T PRK07799 105 AAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGH 184 (263)
T ss_pred EEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccE
Confidence 9999999999999999999999999998876 45555555444444454445444 3799999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|+|.. .+..........+...|+..+
T Consensus 185 vv~~~-------------~l~~~a~~~a~~~~~~~~~a~ 210 (263)
T PRK07799 185 VVPDG-------------QALDKALELAELINANGPLAV 210 (263)
T ss_pred ecCcc-------------hHHHHHHHHHHHHHhcChHHH
Confidence 99643 122233344566777777654
No 78
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.14 E-value=1.5e-09 Score=112.71 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=111.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCC-CCC-ChhHHHhc--------hHH--HHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPG-AYA-DLKSEELG--------QGE--AIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpG-a~~-g~~aE~~G--------q~~--aiA~~l~als~a~VPiIS 170 (658)
..+++++..+..+..+++.++. ..+-+|.|...++ +++ |.+..... ... ....++..+..+++|+|+
T Consensus 33 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (273)
T PRK07396 33 VRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIA 112 (273)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEE
Confidence 3468999999999999987754 3567888887663 333 43322110 011 112344567789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEEe------CHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYVA------SPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGV 240 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~Vm------gPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~I 240 (658)
.|.|.|+|||+..+..||++||.++++|++. .|.++....+....+...+.+. ..++|++++++|+||+|
T Consensus 113 av~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~v 192 (273)
T PRK07396 113 MVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTV 192 (273)
T ss_pred EECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCee
Confidence 9999999999999999999999999988762 2333333333333344444444 37899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 241 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 241 Ipe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+|.. .|..........|...|+..+.
T Consensus 193 v~~~-------------~l~~~a~~~a~~la~~~~~a~~ 218 (273)
T PRK07396 193 VPLA-------------DLEKETVRWCREMLQNSPMALR 218 (273)
T ss_pred cCHH-------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 9532 3444555566777778877643
No 79
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.12 E-value=2.2e-09 Score=110.30 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------chHHHHHHHHHHHhcCCCCEEEEEcCCCc
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIISIVIGEGG 177 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------Gq~~aiA~~l~als~a~VPiISVViG~a~ 177 (658)
.++++..+....++++.++. ..+.+|.|...+++++ |.+.... ........++..+..+++|+|+.|.|.|+
T Consensus 22 Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 101 (251)
T TIGR03189 22 NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCL 101 (251)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeee
Confidence 68999999999999987754 4577888887766544 4332211 11122334556677899999999999999
Q ss_pred hhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceeeecCCCCC
Q 006153 178 SGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGVIPEPLGG 247 (658)
Q Consensus 178 GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~IIpe~~gg 247 (658)
|||+.....||++||.++++|++ +.|.+. ..+++...+...+.+.+ .++|++++++|+||+|+|..
T Consensus 102 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~--- 177 (251)
T TIGR03189 102 GGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAA-SCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDP--- 177 (251)
T ss_pred eHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCch-HHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcH---
Confidence 99999999999999999998876 334433 33444444555555443 68999999999999999421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 248 AHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 248 ah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
+ ..++......|..+||..+.
T Consensus 178 ------~-----~~a~~~~a~~la~~~p~a~~ 198 (251)
T TIGR03189 178 ------E-----NAALAWFDEHPAKLSASSLR 198 (251)
T ss_pred ------H-----HHHHHHHHHHHHhCCHHHHH
Confidence 1 12222223567777777543
No 80
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=2.4e-09 Score=110.20 Aligned_cols=163 Identities=10% Similarity=0.095 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc-------h----HHHHHHHHHHHhcCCCCEEEEE
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG-------Q----GEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G-------q----~~aiA~~l~als~a~VPiISVV 172 (658)
+++++..+....++++.++. ..+-+|.|...+++++ |.+..... . ...+...+..+..+++|+|+.|
T Consensus 25 Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 104 (257)
T PRK06495 25 NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV 104 (257)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 78999999999999987654 4577888887766554 43322210 0 1122344566778999999999
Q ss_pred cCCCchhhhhhhccccEEEEEcCceEEE----eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCC
Q 006153 173 IGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 173 iG~a~GGGAlalg~aD~ViA~p~A~i~V----mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
.|.|+|||+..+..||++||.++++|++ +|--+.... .....+...+.+. ..++|++++++|+||+|+|..
T Consensus 105 ~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~-l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 105 NGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKH-AMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred CCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHH-HHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 9999999999999999999999998766 111011111 2222233333333 378999999999999999532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 006153 245 LGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 282 (658)
Q Consensus 245 ~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R 282 (658)
.+..........+...||..+...+
T Consensus 184 -------------~~~~~a~~~a~~l~~~~~~a~~~~K 208 (257)
T PRK06495 184 -------------ELMPEAMEIAREIASKSPLATRLAK 208 (257)
T ss_pred -------------HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3344555566778888888654443
No 81
>PLN02888 enoyl-CoA hydratase
Probab=99.12 E-value=2e-09 Score=111.53 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=109.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh-----chH-HHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL-----GQG-EAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~-----Gq~-~aiA~~l~als~a~VPiISVViG~ 175 (658)
...++++..+....++++.++ ...+-+|+|..++.+++ |.+.... +.. ......+..+..+++|+|+.|.|.
T Consensus 30 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~ 109 (265)
T PLN02888 30 ALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGF 109 (265)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCe
Confidence 347899999999999997665 44577888887665544 4332211 111 111234456777899999999999
Q ss_pred CchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCCC
Q 006153 176 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 245 (658)
Q Consensus 176 a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~~ 245 (658)
|+|||...+..||++||.+++.|+. +.|..+....+....+...+.++ ..++|++++++|+||+|+|..
T Consensus 110 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~- 188 (265)
T PLN02888 110 AITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEES- 188 (265)
T ss_pred eechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChH-
Confidence 9999999999999999999998766 23444444444444444444443 379999999999999999532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHH
Q 006153 246 GGAHADPSWTSQQIKIAINESMDELGKMDTQE 277 (658)
Q Consensus 246 ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ 277 (658)
.+..........+...++..
T Consensus 189 ------------~l~~~a~~~a~~la~~~~~a 208 (265)
T PLN02888 189 ------------ELLKKAREVAEAIIKNNQGM 208 (265)
T ss_pred ------------HHHHHHHHHHHHHHhCCHHH
Confidence 23333344455666777665
No 82
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.1e-09 Score=110.50 Aligned_cols=163 Identities=13% Similarity=0.111 Sum_probs=112.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc----h-----H-------HHHHHHHHHHhcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG----Q-----G-------EAIAHNLRTMFGLK 165 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G----q-----~-------~aiA~~l~als~a~ 165 (658)
..+++++..+....++++.++. ..+-+|.|..++++++ |.+..... . . ..+...+..+..++
T Consensus 23 ~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (262)
T PRK07509 23 KMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLP 102 (262)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999987764 4577888888777655 43322110 0 0 01112333456789
Q ss_pred CCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcC
Q 006153 166 VPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQ 235 (658)
Q Consensus 166 VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~G 235 (658)
+|+|+.|.|.|+|||+..+..||++||.+++.|++ +.|..+....++...+...+.+. ..++|++++++|
T Consensus 103 kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~G 182 (262)
T PRK07509 103 VPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELG 182 (262)
T ss_pred CCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcC
Confidence 99999999999999999999999999999998876 34655555555544444444443 379999999999
Q ss_pred CceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 006153 236 IADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKH 281 (658)
Q Consensus 236 lVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~ 281 (658)
+||+|++. +..........|...|+..+...
T Consensus 183 lv~~vv~~---------------~~~~a~~~a~~l~~~~~~~~~~~ 213 (262)
T PRK07509 183 LVTHVSDD---------------PLAAALALAREIAQRSPDAIAAA 213 (262)
T ss_pred Chhhhhch---------------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999832 11234444556777777764443
No 83
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.3e-09 Score=112.87 Aligned_cols=162 Identities=12% Similarity=0.172 Sum_probs=112.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhch-------------------------------
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELGQ------------------------------- 150 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~Gq------------------------------- 150 (658)
..+++++..+....++++.++. ..+-+|.|...+.+++ |.+......
T Consensus 30 ~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T PRK08272 30 KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMID 109 (302)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccccccccccccccccchhh
Confidence 4578999999999999987764 4578888888776554 333222100
Q ss_pred ---HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE-------eCHHHHHHHhhhhccCchHH
Q 006153 151 ---GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKA 220 (658)
Q Consensus 151 ---~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V-------mgPEgaAsIl~rd~~~~~eA 220 (658)
.......+..+..+++|+|+.|.|.|+|||+..+..||++||.++|.|++ ++|. . .|....+...+
T Consensus 110 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~--~--~~~~~vG~~~A 185 (302)
T PRK08272 110 YQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPAT--G--MWAYRLGPQRA 185 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChH--H--HHHHHhhHHHH
Confidence 11122345566789999999999999999999999999999999998764 2221 1 22222333444
Q ss_pred HHhh----cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 006153 221 AEKL----KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHR 282 (658)
Q Consensus 221 aE~~----kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R 282 (658)
.+.+ .+++++++++|+|++|+|. . .|..........|...|+..+...+
T Consensus 186 ~~llltG~~i~a~eA~~~GLv~~vv~~---------~----~l~~~a~~la~~ia~~~~~a~~~~K 238 (302)
T PRK08272 186 KRLLFTGDCITGAQAAEWGLAVEAVPP---------E----ELDERTERLVERIAAVPVNQLAMVK 238 (302)
T ss_pred HHHHHcCCccCHHHHHHcCCCceecCH---------H----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4443 7899999999999999943 2 3445555666778888888654433
No 84
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=1.3e-09 Score=111.67 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=112.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc---------hHHHHHHHHHHHhcCCCCEEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG---------QGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G---------q~~aiA~~l~als~a~VPiISVV 172 (658)
..+++++..+....++++.++. ..+-+|.|..++.+++ |.+..... ........+..+..+++|+|+.|
T Consensus 23 ~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 102 (249)
T PRK05870 23 RRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAV 102 (249)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4578999999999999987654 5678888888776554 43322210 11223334556778999999999
Q ss_pred cCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeec
Q 006153 173 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 242 (658)
Q Consensus 173 iG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIp 242 (658)
.|.|+|||+..+..||++||.++++|++ +.|.++....+....+...+.+. ..+++++++++|+||+|+
T Consensus 103 ~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv- 181 (249)
T PRK05870 103 NGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA- 181 (249)
T ss_pred CCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH-
Confidence 9999999999999999999999998865 33444444333443344444443 368999999999999998
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 243 EPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 243 e~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
+ .+..........+...||..+..
T Consensus 182 ~--------------~l~~~a~~~a~~la~~~~~a~~~ 205 (249)
T PRK05870 182 D--------------DPVAAALELAAGPAAAPRELVLA 205 (249)
T ss_pred h--------------hHHHHHHHHHHHHHhCCHHHHHH
Confidence 2 23334445556677778776443
No 85
>PRK08321 naphthoate synthase; Validated
Probab=99.11 E-value=2.5e-09 Score=112.86 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=110.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-------CC-CChhHHHhc------------h--H--H----HH
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-------AY-ADLKSEELG------------Q--G--E----AI 154 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-------a~-~g~~aE~~G------------q--~--~----ai 154 (658)
..+++++..+.-..++++.++ ...+.+|.|...+. ++ .|.+....+ . . . .+
T Consensus 45 ~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (302)
T PRK08321 45 VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHI 124 (302)
T ss_pred cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHH
Confidence 457899999999999998765 45677888887651 33 243322110 0 0 0 01
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEE-cCceEEE------eCHHHHHHHhhhhccCchHHHHh----
Q 006153 155 AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLML-ENAVFYV------ASPEACAAILWKSAKASPKAAEK---- 223 (658)
Q Consensus 155 A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~-p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~---- 223 (658)
..+...+..+++|+|+.|.|.|+|||+..+..||++||. ++++|++ +.|.++....+....+...+.+.
T Consensus 125 ~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG 204 (302)
T PRK08321 125 LEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 204 (302)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcC
Confidence 123345667899999999999999999999999999999 6898876 23444444444444455445444
Q ss_pred hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 224 LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 224 ~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
..++|++++++|+||.|+|.. .+..........|...|+..+
T Consensus 205 ~~~~A~eA~~~GLv~~vv~~~-------------~l~~~a~~~a~~la~~~~~a~ 246 (302)
T PRK08321 205 RTYSAEEAHDMGAVNAVVPHA-------------ELETEALEWAREINGKSPTAM 246 (302)
T ss_pred CccCHHHHHHCCCceEeeCHH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 378999999999999999532 344455555677778887764
No 86
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=2.2e-09 Score=111.08 Aligned_cols=162 Identities=12% Similarity=0.144 Sum_probs=109.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhch---------------HH----HHHHHHHHHh
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELGQ---------------GE----AIAHNLRTMF 162 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~Gq---------------~~----aiA~~l~als 162 (658)
...+++...+....++++.+.. ..+-+|.|...+++++ |.+...... .. .+...+..+.
T Consensus 26 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (272)
T PRK06210 26 RLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLT 105 (272)
T ss_pred cccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHH
Confidence 4578999999999999986653 4567888887765554 433222110 00 0112345667
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHH
Q 006153 163 GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELC 232 (658)
Q Consensus 163 ~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~ 232 (658)
.+++|+|++|.|.|+|||+..+..||++||.++++|++ +.|.++....++...+...+.++ ..++|++++
T Consensus 106 ~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~ 185 (272)
T PRK06210 106 ALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEAL 185 (272)
T ss_pred hCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHH
Confidence 78999999999999999999999999999999999875 33444444444443344444443 378999999
Q ss_pred HcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcC-CCHHHH
Q 006153 233 KLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGK-MDTQEL 278 (658)
Q Consensus 233 ~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~-l~~~~l 278 (658)
++|+||.|+|. . .+..........+.. .+|..+
T Consensus 186 ~~Glv~~vv~~---------~----~l~~~a~~~a~~i~~~~~p~a~ 219 (272)
T PRK06210 186 RLGLVNRVVPP---------D----ELMERTLAYAEDLARNVSPASM 219 (272)
T ss_pred HcCCcceecCH---------H----HHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999943 2 233344455566665 366654
No 87
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.10 E-value=3.7e-09 Score=108.80 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=109.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC-ChhHHHh------ch-----HHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYA-DLKSEEL------GQ-----GEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~-g~~aE~~------Gq-----~~aiA~~l~als~a~VPiISV 171 (658)
..+++++..+.....+++.++ ..+-+|++...+++++ |.+.... +. ...+...+..+..+++|+|+.
T Consensus 24 ~~Nal~~~~~~~L~~~l~~~~-~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 102 (255)
T PRK07112 24 AQNTINDRLIAECMDVLDRCE-HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH 102 (255)
T ss_pred ccCCCCHHHHHHHHHHHHHhh-cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence 346899999999999998777 4677888887665554 3322211 10 112234556677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
|.|.|+|||+..+..||++||.++++|++ +.|.++... .....+...+.+. ..++|++++++|+||+|+
T Consensus 103 v~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~-l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 181 (255)
T PRK07112 103 VRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPF-LIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYG 181 (255)
T ss_pred EecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHH-HHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceec
Confidence 99999999999999999999999998876 344433322 2333344444443 378999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 242 PEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 242 pe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|.. +. .+...+..+...||..+
T Consensus 182 ~~~---------~~------~~~~~a~~l~~~~p~a~ 203 (255)
T PRK07112 182 ANS---------DT------LLRKHLLRLRCLNKAAV 203 (255)
T ss_pred CcH---------HH------HHHHHHHHHHhCCHHHH
Confidence 532 11 23445567777777653
No 88
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.10 E-value=3.8e-09 Score=110.28 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC--CCCC-ChhHHHhc-----h--HHHH----HHHHHHHhcCCCCEEE
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP--GAYA-DLKSEELG-----Q--GEAI----AHNLRTMFGLKVPIIS 170 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTp--Ga~~-g~~aE~~G-----q--~~ai----A~~l~als~a~VPiIS 170 (658)
++++...+....++++.++. ..+-+|+|...+ ++++ |.+..... . ...+ ..++..+..+++|+|+
T Consensus 33 Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 33 NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 78999999999999976654 457788887765 3443 54332211 0 0111 2245567789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEE------e-CHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCcee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYV------A-SPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADG 239 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~V------m-gPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~ 239 (658)
.|.|.|+|||...+..||++|+.++++|++ + .|.+.....+....+...+.+.+ .+++++++++|+||.
T Consensus 113 aV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~ 192 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDE 192 (278)
T ss_pred EEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcE
Confidence 999999999999999999999999998876 3 35555555555555555555543 699999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
|+|.. .+..........|...|+..+
T Consensus 193 vv~~~-------------~l~~~a~~~a~~l~~~~~~a~ 218 (278)
T PLN03214 193 VVPAA-------------ALMEAAASAMERALKLPSAAR 218 (278)
T ss_pred ecChH-------------HHHHHHHHHHHHHHcCCHHHH
Confidence 99532 233344455567778888764
No 89
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.09 E-value=5.1e-10 Score=110.29 Aligned_cols=127 Identities=22% Similarity=0.246 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhhh
Q 006153 106 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVI---GEGGSGGA 181 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVVi---G~a~GGGA 181 (658)
|.+++.......+.++.|...+ -+|+..+||||..+.... ..+.++..+++|+|+.|. |.|.|||+
T Consensus 8 g~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~----------~i~~~l~~~~kPvia~v~~~~G~AasgG~ 77 (187)
T cd07020 8 GAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTR----------EIVQAILASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred eEEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHH----------HHHHHHHhCCCCEEEEEecCCCCchhHHH
Confidence 6677777888889998887665 468888999996544322 223344567899999999 99999999
Q ss_pred hhhccccEEEEEcCceEEEeCHHHH--------------------HHHhhhhccCc--hHHHH----hhcccHHHHHHcC
Q 006153 182 LAIGCANKLLMLENAVFYVASPEAC--------------------AAILWKSAKAS--PKAAE----KLKITGSELCKLQ 235 (658)
Q Consensus 182 lalg~aD~ViA~p~A~i~VmgPEga--------------------AsIl~rd~~~~--~eAaE----~~kitA~dL~~~G 235 (658)
+.+..||+++|.|+|.|+..+|-+. ....+....+. ..+.+ ...+++++++++|
T Consensus 78 ~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~G 157 (187)
T cd07020 78 YILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLG 157 (187)
T ss_pred HHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcC
Confidence 9999999999999999988555411 00011111222 22222 2368999999999
Q ss_pred Cceeeec
Q 006153 236 IADGVIP 242 (658)
Q Consensus 236 lVD~IIp 242 (658)
+||+|++
T Consensus 158 lvd~v~~ 164 (187)
T cd07020 158 VIDLIAA 164 (187)
T ss_pred CcccccC
Confidence 9999994
No 90
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.08 E-value=3.4e-09 Score=109.15 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=111.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh-----c-------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL-----G-------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~-----G-------q~~aiA~~l~als~a~VPiI 169 (658)
..+++++..+....++++.++. ..+.+|.|...+++++ |.+.... . ....+...+..+..+++|+|
T Consensus 26 ~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 105 (260)
T PRK07827 26 NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVI 105 (260)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4578999999999999987654 4578888888776554 3322211 0 11223445566778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||+..+..||++||.+++.|++ +.|..++..++.... ...+.+. ..++|++++++|+||+
T Consensus 106 aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~ 184 (260)
T PRK07827 106 AAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTA 184 (260)
T ss_pred EEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCccc
Confidence 9999999999999999999999999998876 345554444443322 2233332 3789999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLK 280 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~ 280 (658)
|++ .+.........++...|+..+..
T Consensus 185 v~~---------------~l~~~a~~~a~~la~~~~~a~~~ 210 (260)
T PRK07827 185 AAD---------------DVDAAVAALLADLRRGSPQGLAE 210 (260)
T ss_pred chH---------------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 872 13444555566777788776433
No 91
>PLN02921 naphthoate synthase
Probab=99.08 E-value=3.1e-09 Score=113.74 Aligned_cols=162 Identities=16% Similarity=0.163 Sum_probs=112.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-ChhHHHhc------h--HH--HHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEELG------Q--GE--AIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTp-Ga~~-g~~aE~~G------q--~~--aiA~~l~als~a~VPiIS 170 (658)
...++++..+....++++.++. ..+-+|.|..++ .+++ |.+....+ . .. .....+..+..+++|+|+
T Consensus 87 ~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 166 (327)
T PLN02921 87 RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIA 166 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 4578999999999999987654 457888888876 3443 43322211 0 01 112234567778999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCceee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADGV 240 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~I 240 (658)
.|.|.|+|||+..+..||++||.+++.|++ +.|.++.........+...+.+++ .++|++++++|+||.|
T Consensus 167 aVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~v 246 (327)
T PLN02921 167 MVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTV 246 (327)
T ss_pred EECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEE
Confidence 999999999999999999999999998876 234443333333334444454443 6899999999999999
Q ss_pred ecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 241 IPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 241 Ipe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
+|.. .+..........|...|+..+
T Consensus 247 v~~~-------------~l~~~a~~~a~~la~~~p~al 271 (327)
T PLN02921 247 VPLD-------------ELEGETVKWCREILRNSPTAI 271 (327)
T ss_pred eCHH-------------HHHHHHHHHHHHHHccCHHHH
Confidence 9532 344455566677778887764
No 92
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.05 E-value=7.3e-09 Score=106.38 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-CCcEEEEecCCCCCC-ChhHHHhc----------hHHHHHHHHHHHhcCCCCEEEEE
Q 006153 105 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk~-~lPIV~LiDTpGa~~-g~~aE~~G----------q~~aiA~~l~als~a~VPiISVV 172 (658)
..+++...+.-...++..++.. .+.+|.|...+.+++ |.+..... ........+..+..+++|+|+.|
T Consensus 26 ~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 105 (257)
T COG1024 26 LNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAV 105 (257)
T ss_pred ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEE
Confidence 3789999999999999988765 789999998886444 44333211 11223346677888999999999
Q ss_pred cCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeec
Q 006153 173 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIP 242 (658)
Q Consensus 173 iG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIp 242 (658)
.|.|+|||.-.+.+||++||.++++|++ +-|....+..+....+...+.+. ..+++++++++|+||.|++
T Consensus 106 ~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 185 (257)
T COG1024 106 NGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVP 185 (257)
T ss_pred cceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeC
Confidence 9999999999999999999999998876 33433555555555566555553 3799999999999999995
Q ss_pred C
Q 006153 243 E 243 (658)
Q Consensus 243 e 243 (658)
.
T Consensus 186 ~ 186 (257)
T COG1024 186 D 186 (257)
T ss_pred C
Confidence 3
No 93
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=6.6e-09 Score=106.67 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc-----h-----HHHHHHHHHHHhcCCCCEEEEEc
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG-----Q-----GEAIAHNLRTMFGLKVPIISIVI 173 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G-----q-----~~aiA~~l~als~a~VPiISVVi 173 (658)
++++++.+....+++..++. ..+-+|.|...+.+++ |.+..... . .......+..+..+++|+|+.|.
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 102 (249)
T PRK07938 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVH 102 (249)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 78999999999999987654 5677888887665544 43322111 0 11223445567789999999999
Q ss_pred CCCchhhhhhhccccEEEEEcCceEEE----eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCceeeecCCC
Q 006153 174 GEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADGVIPEPL 245 (658)
Q Consensus 174 G~a~GGGAlalg~aD~ViA~p~A~i~V----mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe~~ 245 (658)
|.|+|||+..+..||++|+.++++|++ +|--+... ......+...+.+. ..+++++++++|+||+|+|..
T Consensus 103 G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~-~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~- 180 (249)
T PRK07938 103 GFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAAT-HLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRD- 180 (249)
T ss_pred CEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHH-HHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH-
Confidence 999999999999999999999998766 11112221 22222333334333 378999999999999999532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 006153 246 GGAHADPSWTSQQIKIAINESMDELGKMDTQELL 279 (658)
Q Consensus 246 ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll 279 (658)
.+..........|...|+..+.
T Consensus 181 ------------~l~~~a~~~a~~la~~~~~a~~ 202 (249)
T PRK07938 181 ------------QLDEAALEVARKIAAKDTRVIR 202 (249)
T ss_pred ------------HHHHHHHHHHHHHHhCCHHHHH
Confidence 3444455556677778877643
No 94
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.04 E-value=8.9e-09 Score=108.40 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhh------cCCcEEEEecC-CCCCC-ChhHHHhc------h-------HHHHHHHHHHHh-
Q 006153 105 FGMPTPHGYRKALRMMYYADH------HGFPIVTFIDT-PGAYA-DLKSEELG------Q-------GEAIAHNLRTMF- 162 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk------~~lPIV~LiDT-pGa~~-g~~aE~~G------q-------~~aiA~~l~als- 162 (658)
..++++..+.....+++.++. ..+-+|.|... +++++ |.+..... . ...+...+..+.
T Consensus 37 ~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (287)
T PRK08788 37 RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHR 116 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999987654 45677888776 44443 43322110 0 011122222222
Q ss_pred --cCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHH
Q 006153 163 --GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSE 230 (658)
Q Consensus 163 --~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~d 230 (658)
.+++|+|+.|.|.|+|||+..+..||++||.++++|++ +.|..+...+++...+...+.+.+ .+++++
T Consensus 117 ~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~e 196 (287)
T PRK08788 117 GFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEE 196 (287)
T ss_pred hcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHH
Confidence 68999999999999999999999999999999998876 445554444444444445554443 689999
Q ss_pred HHHcCCceeeecC
Q 006153 231 LCKLQIADGVIPE 243 (658)
Q Consensus 231 L~~~GlVD~IIpe 243 (658)
++++|+||.|+|.
T Consensus 197 A~~~GLV~~vv~~ 209 (287)
T PRK08788 197 LHDMGLVDVLVED 209 (287)
T ss_pred HHHCCCCcEecCc
Confidence 9999999999954
No 95
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.03 E-value=6.2e-09 Score=109.21 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=106.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh----c------------------------h---
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL----G------------------------Q--- 150 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~----G------------------------q--- 150 (658)
...++++..+..+.++++.+. ...+-+|.|..++++++ |.+.... . .
T Consensus 24 ~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (288)
T PRK08290 24 ARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYARE 103 (288)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHH
Confidence 457899999999999997665 45678888888776554 3221110 0 0
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE----eCHHHHHHHhhhhccCchHHHHh---
Q 006153 151 GEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAKASPKAAEK--- 223 (658)
Q Consensus 151 ~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V----mgPEgaAsIl~rd~~~~~eAaE~--- 223 (658)
...+..++..+..+++|+|+.|.|.|+|||+..+..||++||.++++|++ +|-.++....++...+...+.+.
T Consensus 104 ~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~~~~~~~l~~~iG~~~A~~lllt 183 (288)
T PRK08290 104 WEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPWELGPRKAKELLFT 183 (288)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcCcchHHHHHHHhhHHHHHHHHHc
Confidence 01112233456779999999999999999999999999999999988754 11112233333333333333333
Q ss_pred -hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 224 -LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 224 -~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
..++|++++++|+||+|+|.+ .+..........|...|+..+
T Consensus 184 G~~i~A~eA~~~GLV~~vv~~~-------------~l~~~a~~~a~~la~~~~~a~ 226 (288)
T PRK08290 184 GDRLTADEAHRLGMVNRVVPRD-------------ELEAETLELARRIAAMPPFGL 226 (288)
T ss_pred CCCCCHHHHHHCCCccEeeCHH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 378999999999999999532 244445555566666666543
No 96
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.02 E-value=8.7e-09 Score=100.15 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=98.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHH-----------hchHHHHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~-----------~Gq~~aiA~~l~als~a~VPiIS 170 (658)
..+++++..++...++++.+.. ..+-+|.|...++++. |.+... ......+..++..+...++|+|+
T Consensus 19 ~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia 98 (195)
T cd06558 19 KRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIA 98 (195)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 3578999999999999987765 4567888877766544 433221 11233445556677789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHH----hhcccHHHHHHcCCceee
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGV 240 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE----~~kitA~dL~~~GlVD~I 240 (658)
+|.|.|+|||+..+..||+++|.+++.|++ +.|.+.....+........+.+ ...+++.++++.|+||+|
T Consensus 99 ~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~ 178 (195)
T cd06558 99 AVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEV 178 (195)
T ss_pred EECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCee
Confidence 999999999999998999999999988875 2233333333333222222222 247899999999999999
Q ss_pred ec
Q 006153 241 IP 242 (658)
Q Consensus 241 Ip 242 (658)
++
T Consensus 179 ~~ 180 (195)
T cd06558 179 VP 180 (195)
T ss_pred cC
Confidence 94
No 97
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.6e-08 Score=103.75 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=94.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHhc------hHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEELG------QGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~G------q~~aiA~~l~als~a~VPiISVViG~ 175 (658)
..+++++..+....++++.++. ..+-+|.|..++.+++ |.+..... ....+...+..+..+++|+|+.|.|.
T Consensus 20 ~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 99 (248)
T PRK06072 20 KLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGV 99 (248)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence 4578999999999999987764 4466888887665554 43332211 11122344556777899999999999
Q ss_pred CchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 176 GGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 176 a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
|+|||+..+..||++||.+++.|++ +.|..+...++....+. .+.+. ..++|++++++|+||.
T Consensus 100 a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~ 172 (248)
T PRK06072 100 TAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKI 172 (248)
T ss_pred eehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCccc
Confidence 9999998888999999999998765 33444444433333332 33333 3789999999999995
No 98
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.99 E-value=5.4e-09 Score=112.35 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=104.4
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-ChhHHHhc---------
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEELG--------- 149 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTp-Ga~~-g~~aE~~G--------- 149 (658)
+|.-+.|.-|+|. ...++++.......+++..++. ..+-+|+|..++ ++++ |.+.....
T Consensus 10 ~~~v~~itLnrP~---------~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (342)
T PRK05617 10 EGGVGVITLNRPK---------ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPL 80 (342)
T ss_pred ECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCch
Confidence 4544445555553 4568999999999999976654 457788888877 4443 43322110
Q ss_pred ----hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchH
Q 006153 150 ----QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPK 219 (658)
Q Consensus 150 ----q~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~e 219 (658)
.......++..+..+++|+|++|.|.|+|||+..+..||++||.++|+|++ +.|.++....+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 001112344566778999999999999999999999999999999998876 4455555443333322 33
Q ss_pred HHHh----hcccHHHHHHcCCceeeecC
Q 006153 220 AAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 220 AaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
+.+. ..++|++++++|+||+|+|.
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~ 187 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPS 187 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCH
Confidence 3333 37899999999999999953
No 99
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.98 E-value=1e-08 Score=108.17 Aligned_cols=174 Identities=14% Similarity=0.202 Sum_probs=114.4
Q ss_pred ECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHH-h---------
Q 006153 81 MDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEE-L--------- 148 (658)
Q Consensus 81 I~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~-~--------- 148 (658)
.+|.-+.|.-|++. ..++++...+....++++.++. ..+.+|+|...+++++ |.+... .
T Consensus 11 ~~~~Va~ItLnrP~---------~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 11 TAGPVATITLNRPE---------QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred ccCCEEEEEecCCc---------ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 34554455556553 4578999999999999987754 5688999988776554 322110 0
Q ss_pred -c---hHHHH----------HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEe-----CHHHHHHH
Q 006153 149 -G---QGEAI----------AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVA-----SPEACAAI 209 (658)
Q Consensus 149 -G---q~~ai----------A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~Vm-----gPEgaAsI 209 (658)
+ ....+ ...+..+..+++|+|+.|.|.|+|||...+..||++||.++|+|+.- |.-.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~~~ 161 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW 161 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchhHH
Confidence 0 00111 12344567789999999999999999999999999999999988761 21111111
Q ss_pred hhhhccCchHHHHhh----cccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 210 LWKSAKASPKAAEKL----KITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 210 l~rd~~~~~eAaE~~----kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
+ ...+...+.+++ .++|++++++|+|++|+|.. .|..........|...|+..+
T Consensus 162 ~--~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~-------------~l~~~a~~~a~~la~~~p~a~ 219 (298)
T PRK12478 162 L--YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFE-------------RLEARVAEVATELARIPLSQL 219 (298)
T ss_pred H--HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHH-------------HHHHHHHHHHHHHHhCCHHHH
Confidence 2 123344444443 78999999999999999532 344445555556666776653
No 100
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.95 E-value=5.9e-08 Score=99.27 Aligned_cols=136 Identities=16% Similarity=0.199 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC--CcEEEEecCCCCCC-ChhHHHhc-----------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 106 GMPTPHGYRKALRMMYYADHHG--FPIVTFIDTPGAYA-DLKSEELG-----------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~--lPIV~LiDTpGa~~-g~~aE~~G-----------q~~aiA~~l~als~a~VPiISV 171 (658)
.+++...+....+++..+.... ..+|.+...++++. |.+..... ....+...+.++..+++|+|+.
T Consensus 21 Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 100 (239)
T PLN02267 21 HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAA 100 (239)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4588999999999998776543 35677777665443 33222110 1112333556677899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEc-CceEEE-------eCHHHHHHHhhhhccCchHH-HHh----hcccHHHHHHcCCce
Q 006153 172 VIGEGGSGGALAIGCANKLLMLE-NAVFYV-------ASPEACAAILWKSAKASPKA-AEK----LKITGSELCKLQIAD 238 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p-~A~i~V-------mgPEgaAsIl~rd~~~~~eA-aE~----~kitA~dL~~~GlVD 238 (658)
|.|.|+|||+..+..||++||.+ .++|++ ..|.++..++.+ ..+...+ .++ ..++|++++++|+||
T Consensus 101 V~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~-~vG~~~a~~~llltG~~~~a~eA~~~Glv~ 179 (239)
T PLN02267 101 VTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRA-KIGSPAARRDVLLRAAKLTAEEAVEMGIVD 179 (239)
T ss_pred ECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHH-HcChHHHHHHHHHcCCcCCHHHHHHCCCcc
Confidence 99999999999988999999985 466654 346665554443 3333444 233 378999999999999
Q ss_pred eeec
Q 006153 239 GVIP 242 (658)
Q Consensus 239 ~IIp 242 (658)
+|+|
T Consensus 180 ~vv~ 183 (239)
T PLN02267 180 SAHD 183 (239)
T ss_pred eecC
Confidence 9995
No 101
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.95 E-value=7.1e-09 Score=107.68 Aligned_cols=153 Identities=11% Similarity=0.095 Sum_probs=109.6
Q ss_pred eEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhch-------HHHH
Q 006153 84 RTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELGQ-------GEAI 154 (658)
Q Consensus 84 rpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~Gq-------~~ai 154 (658)
..|++|.-++. -.-.++.+.......+++...+ ....|+|+|...+++++ |.+..+.-. ....
T Consensus 45 ~~I~lItlNRP--------~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~ 116 (290)
T KOG1680|consen 45 NGIALITLNRP--------KALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIF 116 (290)
T ss_pred CCeEEEEeCCh--------HHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccc
Confidence 45666665543 2346777777777777776554 45589999999999887 444333211 1123
Q ss_pred HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHH------HHHHHhhhhccCchHHHHh----h
Q 006153 155 AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPE------ACAAILWKSAKASPKAAEK----L 224 (658)
Q Consensus 155 A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPE------gaAsIl~rd~~~~~eAaE~----~ 224 (658)
.+.+..++..+.|+|+.|.|.|.|||.-.+.+||++||.++|.|++..++ ..-+.-+....+...|.++ .
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~ 196 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGR 196 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcC
Confidence 34455566789999999999999999999989999999999999873333 3333334445555666665 3
Q ss_pred cccHHHHHHcCCceeeecCC
Q 006153 225 KITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 225 kitA~dL~~~GlVD~IIpe~ 244 (658)
+++|+++.++|+|+.|+|..
T Consensus 197 ~~~AqeA~~~GlVn~Vvp~~ 216 (290)
T KOG1680|consen 197 RLGAQEAKKIGLVNKVVPSG 216 (290)
T ss_pred cccHHHHHhCCceeEeecch
Confidence 79999999999999999864
No 102
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.90 E-value=4.8e-08 Score=107.30 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=108.4
Q ss_pred CCceEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh
Q 006153 71 DPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL 148 (658)
Q Consensus 71 D~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~ 148 (658)
|+.|+. ...|....|.-|++. ...+++..++..+.++++.+. ...+-+|+|...+.+++ |-+....
T Consensus 36 ~~~V~~---e~~g~v~~ItLNRP~---------~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l 103 (401)
T PLN02157 36 DYQVLV---EGSGCSRTAILNRPP---------ALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSL 103 (401)
T ss_pred CCceEE---EEECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHH
Confidence 455553 234555555566653 457899999999999997654 45678888887776655 3332211
Q ss_pred ------chH---HHH----HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHH
Q 006153 149 ------GQG---EAI----AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAI 209 (658)
Q Consensus 149 ------Gq~---~ai----A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsI 209 (658)
+.. ... ..+...+..+++|+|+.|.|.|+|||.-.+.+||++|+.+++.|++ +.|.+.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~ 183 (401)
T PLN02157 104 YHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASF 183 (401)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHH
Confidence 110 111 2234557789999999999999999999999999999999998876 346555544
Q ss_pred hhhhccCchHHHHh----hcccHHHHHHcCCceeeecC
Q 006153 210 LWKSAKASPKAAEK----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 210 l~rd~~~~~eAaE~----~kitA~dL~~~GlVD~IIpe 243 (658)
......+. .+... ..+++.+++++|++|.|||.
T Consensus 184 ~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~ 220 (401)
T PLN02157 184 NLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRS 220 (401)
T ss_pred HHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCH
Confidence 33322221 22222 36899999999999999964
No 103
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.88 E-value=4e-08 Score=106.23 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=106.5
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CCC-ChhHHHh-----------c-hHHHHHHHHHHHhcCCCCEE
Q 006153 105 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AYA-DLKSEEL-----------G-QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~~-g~~aE~~-----------G-q~~aiA~~l~als~a~VPiI 169 (658)
..+++..++.....+++.+. ...+-+|+|..+++ +++ |.+.... + .......++..+..+++|+|
T Consensus 49 ~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 49 YNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 45889999999999997665 45688999988873 443 4322211 0 01112234556777899999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||...+..||++|+.++|.|++ +.|.+++........+...+.+++ .++|++++++|+||.
T Consensus 129 AAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~ 208 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMD 208 (360)
T ss_pred EEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChhe
Confidence 9999999999999998999999999999877 456655555555555555555443 689999999999999
Q ss_pred eecCCC--CCCCCCh
Q 006153 240 VIPEPL--GGAHADP 252 (658)
Q Consensus 240 IIpe~~--ggah~dp 252 (658)
|+|... |...+.|
T Consensus 209 VVp~~~~~~~~~~~~ 223 (360)
T TIGR03200 209 VVPALKVDGKFVANP 223 (360)
T ss_pred ecCchhcCcchhcCc
Confidence 997532 4455555
No 104
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.87 E-value=6.4e-08 Score=105.56 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=104.9
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCCCCCC-ChhHHHh------ch--H
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTPGAYA-DLKSEEL------GQ--G 151 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTpGa~~-g~~aE~~------Gq--~ 151 (658)
+|.-..|.-|++. ..++++........++++.++. ..+.+|+|...+++++ |.+.... +. .
T Consensus 18 ~~~v~~ItLnrP~---------~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 88 (379)
T PLN02874 18 KGRVRVITLNRPR---------QLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL 88 (379)
T ss_pred ECCEEEEEECCCc---------cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence 4444445555553 4468999999999999987654 5678898888776554 4332211 00 0
Q ss_pred HHH---HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHH
Q 006153 152 EAI---AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAE 222 (658)
Q Consensus 152 ~ai---A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE 222 (658)
..+ ...+..+..+++|+|++|.|.|+|||+..+..||++||.++|+|++ +.|.+++..+.....+ ..+.+
T Consensus 89 ~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g-~~a~~ 167 (379)
T PLN02874 89 EVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG-HLGEY 167 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH-HHHHH
Confidence 111 1223456678999999999999999999998999999999998876 4566555554443322 22332
Q ss_pred h----hcccHHHHHHcCCceeeecC
Q 006153 223 K----LKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 223 ~----~kitA~dL~~~GlVD~IIpe 243 (658)
+ ..+++.+++++|+||+|+|.
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~ 192 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPS 192 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCH
Confidence 2 37899999999999999964
No 105
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.86 E-value=1.8e-08 Score=99.37 Aligned_cols=89 Identities=27% Similarity=0.276 Sum_probs=73.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q 006153 105 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALA 183 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk~~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAla 183 (658)
.|.+++..+....|.++.|.+.+ -+||+.+||||..+... ......+..+++|+|+.|.|.|.|+|++.
T Consensus 7 ~g~I~~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~----------~~I~~~l~~~~~pvva~V~g~AaSaG~~i 76 (178)
T cd07021 7 EGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSA----------LEIVDLILNSPIPTIAYVNDRAASAGALI 76 (178)
T ss_pred eeEECHHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHH----------HHHHHHHHhCCCCEEEEECCchHHHHHHH
Confidence 37888888999999999998776 47888999999664322 22334445678999999999999999999
Q ss_pred hccccEEEEEcCceEEEeCH
Q 006153 184 IGCANKLLMLENAVFYVASP 203 (658)
Q Consensus 184 lg~aD~ViA~p~A~i~VmgP 203 (658)
+..||+++|.|++.++..+|
T Consensus 77 a~a~d~i~m~p~a~iG~~~~ 96 (178)
T cd07021 77 ALAADEIYMAPGATIGAAEP 96 (178)
T ss_pred HHhCCeEEECCCCeEecCee
Confidence 99999999999999988666
No 106
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.84 E-value=5.9e-08 Score=94.57 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhhh-cCCc-EEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q 006153 108 PTPHGYRKALRMMYYADH-HGFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG 185 (658)
Q Consensus 108 l~p~g~rKa~R~i~lAdk-~~lP-IV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg 185 (658)
.+..++....+.++.|.+ .++. ||.-++++|..+... ..+...+..+..+++|+|+.|.|.|.|||++.+.
T Consensus 19 ~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~-------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~ 91 (177)
T cd07014 19 QGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVASGGGNAASGGYWIST 91 (177)
T ss_pred CCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHH-------HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHH
Confidence 334456677777766654 3454 555578877643321 2345566677778999999999999999999999
Q ss_pred cccEEEEEcCceEEEeCHHHH----HHHhh------------hhccCchHHHHh----hcccHHHHHHcCCceeee
Q 006153 186 CANKLLMLENAVFYVASPEAC----AAILW------------KSAKASPKAAEK----LKITGSELCKLQIADGVI 241 (658)
Q Consensus 186 ~aD~ViA~p~A~i~VmgPEga----AsIl~------------rd~~~~~eAaE~----~kitA~dL~~~GlVD~II 241 (658)
.||+++|.|++.|+..|.-.. ...+. .+........+. ..++++++++.|+||+|.
T Consensus 92 a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~ 167 (177)
T cd07014 92 PANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLG 167 (177)
T ss_pred hCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCC
Confidence 999999999999999876422 11111 111111222222 248999999999999999
No 107
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.82 E-value=1.5e-07 Score=103.61 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=111.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh------c---hH----HHHHHHHHHHhcCCCCE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL------G---QG----EAIAHNLRTMFGLKVPI 168 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~------G---q~----~aiA~~l~als~a~VPi 168 (658)
...+++..+.....++++.++ ...+-+|+|...+++++ |-+.... + .. .....+...+..+++|+
T Consensus 62 ~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPv 141 (407)
T PLN02851 62 SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPN 141 (407)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 457899999999999997664 45678888887766655 3322211 1 01 11223344566789999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCch---HHHHhhcccHHHHHHcCCcee
Q 006153 169 ISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASP---KAAEKLKITGSELCKLQIADG 239 (658)
Q Consensus 169 ISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~---eAaE~~kitA~dL~~~GlVD~ 239 (658)
|++|.|.|+|||+..+.+||++|+++++.|++ +.|.+.++.......+.. -+.....+++.++++.|+++.
T Consensus 142 IA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~eA~~~GLa~~ 221 (407)
T PLN02851 142 VAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATH 221 (407)
T ss_pred EEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHHHHHCCCcee
Confidence 99999999999999999999999999998876 446655554433322221 111223789999999999999
Q ss_pred eecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006153 240 VIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKF 286 (658)
Q Consensus 240 IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~ 286 (658)
+||.. .+ ..+...|..+..-++.. +..-..+|
T Consensus 222 ~v~~~-------------~l-~~l~~~l~~~~~~~~~~-~~~~l~~~ 253 (407)
T PLN02851 222 YCLNA-------------RL-PLIEERLGKLLTDDPAV-IEDSLAQY 253 (407)
T ss_pred ecCHh-------------hH-HHHHHHHHhhccCCHHH-HHHHHHHh
Confidence 99643 23 34455555554444443 45555555
No 108
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.80 E-value=9e-08 Score=112.03 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=104.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc------------hHHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG------------QGEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G------------q~~aiA~~l~als~a~VPiI 169 (658)
..++++.........+++.++ ...+-+|.|..++++++ |.+..... ....+...+.++..+++|+|
T Consensus 27 ~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 106 (715)
T PRK11730 27 SVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTV 106 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 346889999999999998665 45678888888776554 43322211 11122344566778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||...+..||++||.++++|++ +.|.++....++...+...+.+++ .++|++++++|+||+
T Consensus 107 Aav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~ 186 (715)
T PRK11730 107 AAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDA 186 (715)
T ss_pred EEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeE
Confidence 9999999999999999999999999999877 446666666555555555555543 789999999999999
Q ss_pred eecC
Q 006153 240 VIPE 243 (658)
Q Consensus 240 IIpe 243 (658)
|+|.
T Consensus 187 vv~~ 190 (715)
T PRK11730 187 VVAP 190 (715)
T ss_pred ecCH
Confidence 9953
No 109
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.79 E-value=4.5e-08 Score=96.28 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEc---CCCchhhh
Q 006153 106 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVI---GEGGSGGA 181 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVVi---G~a~GGGA 181 (658)
|.+++..+.-..|.++.|.+.+ -+|++.+||||..+... ..|. .++...++|++++|. |.|.|+|+
T Consensus 8 G~I~~~~~~~l~~~l~~A~~~~~~~i~l~inSPGG~v~~~-------~~I~---~~i~~~~~pvv~~v~p~g~~AaSag~ 77 (172)
T cd07015 8 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAA-------GNIV---QRIQQSKIPVIIYVYPPGASAASAGT 77 (172)
T ss_pred eEECHhHHHHHHHHHHHHhcCCCCeEEEEEECCCCCHHHH-------HHHH---HHHHhcCcCEEEEEecCCCeehhHHH
Confidence 7888888889999999987765 58999999999765432 1233 334457899999999 99999999
Q ss_pred hhhccccEEEEEcCceEEEeCHHHHH-H----------H----h--hhh----ccCchHHHH-----hhcccHHHHHHcC
Q 006153 182 LAIGCANKLLMLENAVFYVASPEACA-A----------I----L--WKS----AKASPKAAE-----KLKITGSELCKLQ 235 (658)
Q Consensus 182 lalg~aD~ViA~p~A~i~VmgPEgaA-s----------I----l--~rd----~~~~~eAaE-----~~kitA~dL~~~G 235 (658)
+.+..||.++|.|++.++..+|-+.. . + + .+. .-+-.+.++ .+-+|++++++.|
T Consensus 78 ~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G 157 (172)
T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYG 157 (172)
T ss_pred HHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcC
Confidence 99999999999999999998884310 0 0 0 000 000112222 2468899999999
Q ss_pred Cceeeec
Q 006153 236 IADGVIP 242 (658)
Q Consensus 236 lVD~IIp 242 (658)
++|.|+.
T Consensus 158 ~iD~ia~ 164 (172)
T cd07015 158 VIEVVAR 164 (172)
T ss_pred CceeeeC
Confidence 9999993
No 110
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.79 E-value=1.5e-07 Score=102.86 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=102.6
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHh------ch---
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEEL------GQ--- 150 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~------Gq--- 150 (658)
+|.-..|.-|++. ...+++..++..+.++++.+. ...+.+|+|..++.+++ |.+.... +.
T Consensus 16 ~~~i~~ItLnRP~---------~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~ 86 (381)
T PLN02988 16 KSSVRILTLNRPK---------QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRL 86 (381)
T ss_pred ECCEEEEEECCCC---------ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhH
Confidence 4444445555553 456899999999999997654 45678888888775554 4322211 10
Q ss_pred HHHH----HHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHH
Q 006153 151 GEAI----AHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKA 220 (658)
Q Consensus 151 ~~ai----A~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eA 220 (658)
...+ ......+..+++|+|++|.|.|+|||...+.+||++||+++++|++ +.|.++++.......+. .+
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~ 165 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FG 165 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HH
Confidence 0111 1233456779999999999999999999999999999999998876 34555555443332221 11
Q ss_pred H----HhhcccHHHHHHcCCceeeecC
Q 006153 221 A----EKLKITGSELCKLQIADGVIPE 243 (658)
Q Consensus 221 a----E~~kitA~dL~~~GlVD~IIpe 243 (658)
. ...++++.+++..|++|.++|.
T Consensus 166 ~~l~LTG~~i~a~eA~~~GLv~~vv~~ 192 (381)
T PLN02988 166 EYVGLTGARLDGAEMLACGLATHFVPS 192 (381)
T ss_pred HHHHHcCCCCCHHHHHHcCCceEecCH
Confidence 1 2237899999999999999954
No 111
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.76 E-value=2.4e-08 Score=95.50 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCCCH---HHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhh
Q 006153 106 GMPTP---HGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 182 (658)
Q Consensus 106 Gsl~p---~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAl 182 (658)
|.++. ..+....+.++.+... -||+.++||||..+... ..+.. .+...++|++++|.|.|.|+|++
T Consensus 7 g~I~~~~~~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~-------~~i~~---~i~~~~~pvi~~v~g~a~s~g~~ 75 (160)
T cd07016 7 GDIGSDWGVTAKEFKDALDALGDD-SDITVRINSPGGDVFAG-------LAIYN---ALKRHKGKVTVKIDGLAASAASV 75 (160)
T ss_pred eEeCCCcccCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHH-------HHHHH---HHHhcCCCEEEEEcchHHhHHHH
Confidence 44444 4566777777766554 79999999999764322 12333 34456899999999999999999
Q ss_pred hhccccEEEEEcCceEEEeCHH
Q 006153 183 AIGCANKLLMLENAVFYVASPE 204 (658)
Q Consensus 183 alg~aD~ViA~p~A~i~VmgPE 204 (658)
.+..||+++|.|++.|++-.|.
T Consensus 76 ia~a~d~~~~~~~a~~~~~~~~ 97 (160)
T cd07016 76 IAMAGDEVEMPPNAMLMIHNPS 97 (160)
T ss_pred HHhcCCeEEECCCcEEEEECCc
Confidence 9999999999999999875554
No 112
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.69 E-value=2e-07 Score=106.14 Aligned_cols=159 Identities=8% Similarity=0.021 Sum_probs=107.0
Q ss_pred CCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCCC-CCC-ChhHH--Hh-------chHHHHHHHHHHHhcCCCCEEEEE
Q 006153 106 GMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTPG-AYA-DLKSE--EL-------GQGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAd--k~~lPIV~LiDTpG-a~~-g~~aE--~~-------Gq~~aiA~~l~als~a~VPiISVV 172 (658)
.++++..++....++..+. ...+-+|.|...++ +++ |.+.. .. .........+..+..+++|+|+.|
T Consensus 297 Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 297 AWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6899999999999998765 35788888888663 333 43311 00 111122234567778999999999
Q ss_pred c-CCCchhh-hhhhccccEEEEE-------cCceEEE------eCHHHHHHHhhhhc-cCchHHHHh------hcccHHH
Q 006153 173 I-GEGGSGG-ALAIGCANKLLML-------ENAVFYV------ASPEACAAILWKSA-KASPKAAEK------LKITGSE 230 (658)
Q Consensus 173 i-G~a~GGG-Alalg~aD~ViA~-------p~A~i~V------mgPEgaAsIl~rd~-~~~~eAaE~------~kitA~d 230 (658)
. |.|+||| +-.+..||++||. +++.|++ +.|.+.....+... .+.+.+.++ ..++|++
T Consensus 377 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~e 456 (550)
T PRK08184 377 EPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADA 456 (550)
T ss_pred CCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHH
Confidence 7 9999999 6677779999999 8888866 44554333333332 355555543 3689999
Q ss_pred HHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHH
Q 006153 231 LCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQE 277 (658)
Q Consensus 231 L~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ 277 (658)
++++|+|++|+|.. .+.........++...||..
T Consensus 457 A~~~GLv~~vv~~~-------------~l~~~a~~~a~~ia~~~p~a 490 (550)
T PRK08184 457 AEELGLVTAAPDDI-------------DWEDEVRIALEERASLSPDA 490 (550)
T ss_pred HHHcCCcccccChH-------------HHHHHHHHHHHHHHhCCHHH
Confidence 99999999999642 23334444455566666654
No 113
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.65 E-value=7.1e-07 Score=104.92 Aligned_cols=139 Identities=13% Similarity=0.149 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-CCc-EEEEecCCCCCC-ChhHHHhc----------hHHHHHHHHHHHhcCCCCEEEE
Q 006153 105 FGMPTPHGYRKALRMMYYADHH-GFP-IVTFIDTPGAYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk~-~lP-IV~LiDTpGa~~-g~~aE~~G----------q~~aiA~~l~als~a~VPiISV 171 (658)
..++++....-...+++.++.. .+- ||.+...+++++ |.+...++ ........+..+..+++|+|+.
T Consensus 35 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 35 VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4788999999999999877644 454 456677776555 43332221 0122334556777899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCc--eEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCcee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENA--VFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADG 239 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A--~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~ 239 (658)
|.|.|+|||.-.+..||++||.+++ .|++ +.|.+.....++...+...+.+++ .+++++++++|+||+
T Consensus 115 v~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~ 194 (737)
T TIGR02441 115 ISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQ 194 (737)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeE
Confidence 9999999999999899999999984 5654 234444444444444455555443 789999999999999
Q ss_pred eecC
Q 006153 240 VIPE 243 (658)
Q Consensus 240 IIpe 243 (658)
|+|.
T Consensus 195 vv~~ 198 (737)
T TIGR02441 195 LVDP 198 (737)
T ss_pred ecCC
Confidence 9964
No 114
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.65 E-value=4.8e-07 Score=102.95 Aligned_cols=160 Identities=11% Similarity=0.033 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCCCC-CC-ChhHHH--h-c---hH---HHHHHHHHHHhcCCCCEEEEE
Q 006153 106 GMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTPGA-YA-DLKSEE--L-G---QG---EAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAd--k~~lPIV~LiDTpGa-~~-g~~aE~--~-G---q~---~aiA~~l~als~a~VPiISVV 172 (658)
.+++...++....++..+. ...+-+|.|...+.+ ++ |.+... . + .. ....+.+..+..+++|+|+.|
T Consensus 293 Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 293 NWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 7899999999999998765 367888888886644 33 333211 0 1 11 112235567788999999999
Q ss_pred -cCCCchhh-hhhhccccEEEE-------EcCceEEE------eCHHHHHHHhhhhcc-CchHH--HHh----hcccHHH
Q 006153 173 -IGEGGSGG-ALAIGCANKLLM-------LENAVFYV------ASPEACAAILWKSAK-ASPKA--AEK----LKITGSE 230 (658)
Q Consensus 173 -iG~a~GGG-Alalg~aD~ViA-------~p~A~i~V------mgPEgaAsIl~rd~~-~~~eA--aE~----~kitA~d 230 (658)
.|.|+||| +-.+..||++|| .+++.|++ +.|.+.....+.... +.+.+ .++ ..++|++
T Consensus 373 ~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~e 452 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEE 452 (546)
T ss_pred CCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHH
Confidence 89999999 777778999999 89998866 335544443333332 33333 212 3689999
Q ss_pred HHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 006153 231 LCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQEL 278 (658)
Q Consensus 231 L~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~l 278 (658)
++++|+|++|+|.. .+..........|...||..+
T Consensus 453 A~~~Glv~~vv~~~-------------~l~~~a~~~a~~la~~~p~a~ 487 (546)
T TIGR03222 453 AERLGLVTAAPDDI-------------DWEDEIRIALEERASFSPDAL 487 (546)
T ss_pred HHHcCCcccccCch-------------HHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999542 233334445556666666553
No 115
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.61 E-value=9.3e-07 Score=100.69 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=90.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCC-CCCC-ChhHHHhch---------HHH----HHHHHHHHhcCCC
Q 006153 104 NFGMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTP-GAYA-DLKSEELGQ---------GEA----IAHNLRTMFGLKV 166 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd--k~~lPIV~LiDTp-Ga~~-g~~aE~~Gq---------~~a----iA~~l~als~a~V 166 (658)
...++++..+....++++.++ ...+.+|.|...+ .+++ |.+....+. ... ...+...+..+++
T Consensus 41 k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pk 120 (546)
T TIGR03222 41 KLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGL 120 (546)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 346889999999999988765 3567888887543 2333 433222110 000 0112234556899
Q ss_pred CEEEEEcCCCchhhhhhhccccEEEEEcC--ceEEE-------eCHHHHHHHhhh--hccCchHHHHh----hcccHHHH
Q 006153 167 PIISIVIGEGGSGGALAIGCANKLLMLEN--AVFYV-------ASPEACAAILWK--SAKASPKAAEK----LKITGSEL 231 (658)
Q Consensus 167 PiISVViG~a~GGGAlalg~aD~ViA~p~--A~i~V-------mgPEgaAsIl~r--d~~~~~eAaE~----~kitA~dL 231 (658)
|+|+.|.|.|+|||+..+..||++||.++ ++|++ +.|..+....+. ...+...+.++ ..++++++
T Consensus 121 PvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA 200 (546)
T TIGR03222 121 KFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRA 200 (546)
T ss_pred CEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHH
Confidence 99999999999999999999999999987 56554 124433332222 12223333333 36899999
Q ss_pred HHcCCceeeec
Q 006153 232 CKLQIADGVIP 242 (658)
Q Consensus 232 ~~~GlVD~IIp 242 (658)
+++|+||.|+|
T Consensus 201 ~~~GLV~~vv~ 211 (546)
T TIGR03222 201 KEWRLVDEVVK 211 (546)
T ss_pred HHcCCceEEeC
Confidence 99999999995
No 116
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.60 E-value=1e-06 Score=103.29 Aligned_cols=140 Identities=11% Similarity=0.066 Sum_probs=101.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCCCCC-ChhHHHhc------h------HHHHHHHHHHHhcCCCCEE
Q 006153 104 NFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPGAYA-DLKSEELG------Q------GEAIAHNLRTMFGLKVPII 169 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpGa~~-g~~aE~~G------q------~~aiA~~l~als~a~VPiI 169 (658)
..+++++.......++++.+. ...+-+|.|..++++++ |.+..... . .......+..+..+++|+|
T Consensus 27 ~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvI 106 (714)
T TIGR02437 27 SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTV 106 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 457889999999999998665 45577888887766554 43322211 0 1122334566778999999
Q ss_pred EEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCcee
Q 006153 170 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIADG 239 (658)
Q Consensus 170 SVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD~ 239 (658)
+.|.|.|+|||.-.+..||++||.++++|++ +.|.++....+....+...+.+++ .++|++++++|+||.
T Consensus 107 Aai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~ 186 (714)
T TIGR02437 107 AAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDA 186 (714)
T ss_pred EEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcE
Confidence 9999999999999998999999999999877 346555555444445555555543 789999999999999
Q ss_pred eecC
Q 006153 240 VIPE 243 (658)
Q Consensus 240 IIpe 243 (658)
|+|.
T Consensus 187 vv~~ 190 (714)
T TIGR02437 187 VVTA 190 (714)
T ss_pred eeCh
Confidence 9953
No 117
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.57 E-value=9.9e-07 Score=103.17 Aligned_cols=139 Identities=11% Similarity=0.147 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-cCCcEEEE-ecCCCCCC-ChhHHHhc------h----HHHHHHHHHHHhcCCCCEEEE
Q 006153 105 FGMPTPHGYRKALRMMYYADH-HGFPIVTF-IDTPGAYA-DLKSEELG------Q----GEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk-~~lPIV~L-iDTpGa~~-g~~aE~~G------q----~~aiA~~l~als~a~VPiISV 171 (658)
..++++.......++++.++. ..+-+|.| ...+++++ |.+..... . ......++..+..+++|+|+.
T Consensus 23 ~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999987654 44555554 45554444 33322210 1 112234556778899999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcC--ceEEE------eCHHHHHHHhhhhccCchHHHHh----hcccHHHHHHcCCcee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLEN--AVFYV------ASPEACAAILWKSAKASPKAAEK----LKITGSELCKLQIADG 239 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~--A~i~V------mgPEgaAsIl~rd~~~~~eAaE~----~kitA~dL~~~GlVD~ 239 (658)
|.|.|+|||+..+.+||++||.++ ++|++ +.|.++....++...+...+.+. ..+++++++++|+||+
T Consensus 103 VnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~ 182 (699)
T TIGR02440 103 IHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDD 182 (699)
T ss_pred ECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcE
Confidence 999999999999999999999987 56655 34555555555555555555554 3789999999999999
Q ss_pred eecC
Q 006153 240 VIPE 243 (658)
Q Consensus 240 IIpe 243 (658)
|+|.
T Consensus 183 vv~~ 186 (699)
T TIGR02440 183 VVPQ 186 (699)
T ss_pred ecCh
Confidence 9953
No 118
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.57 E-value=1.5e-06 Score=101.86 Aligned_cols=139 Identities=12% Similarity=0.162 Sum_probs=96.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh-cCCcEEEEecCC-CCCC-ChhHHHhc------hH----HHHHHHHHHHhcCCCCEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYADH-HGFPIVTFIDTP-GAYA-DLKSEELG------QG----EAIAHNLRTMFGLKVPIIS 170 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk-~~lPIV~LiDTp-Ga~~-g~~aE~~G------q~----~aiA~~l~als~a~VPiIS 170 (658)
...++++..+.....+++.++. ..+-+|.|...+ ++++ |.+..... .. ......+.++..+++|+|+
T Consensus 27 ~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 106 (708)
T PRK11154 27 KMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVA 106 (708)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3467999999999999976654 456677776543 3333 43322210 11 1223345677789999999
Q ss_pred EEcCCCchhhhhhhccccEEEEEcCc--eEEE------eCHHHHHHHhhhhccCchHHHHhh----cccHHHHHHcCCce
Q 006153 171 IVIGEGGSGGALAIGCANKLLMLENA--VFYV------ASPEACAAILWKSAKASPKAAEKL----KITGSELCKLQIAD 238 (658)
Q Consensus 171 VViG~a~GGGAlalg~aD~ViA~p~A--~i~V------mgPEgaAsIl~rd~~~~~eAaE~~----kitA~dL~~~GlVD 238 (658)
.|.|.|+|||.-.+..||++||.+++ .|++ +.|.+.....+....+...+.+++ .++|++++++|+||
T Consensus 107 aV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~ 186 (708)
T PRK11154 107 AIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 186 (708)
T ss_pred EECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCc
Confidence 99999999999998899999999975 6654 335544444444444555555443 78999999999999
Q ss_pred eeec
Q 006153 239 GVIP 242 (658)
Q Consensus 239 ~IIp 242 (658)
+|+|
T Consensus 187 ~vv~ 190 (708)
T PRK11154 187 DVVP 190 (708)
T ss_pred EecC
Confidence 9995
No 119
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.55 E-value=6.6e-07 Score=85.30 Aligned_cols=91 Identities=23% Similarity=0.264 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhcC--CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhh
Q 006153 104 NFGMPTPHGYRKALRMMYYADHHG--FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGA 181 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lAdk~~--lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGA 181 (658)
..|.+++..+....+.++.+.... .+||..+|+||..+... ..+...+ ..+++|+|+++.|.|.|+|+
T Consensus 4 i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~-------~~i~~~l---~~~~kpvva~~~g~~~s~g~ 73 (161)
T cd00394 4 INGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAG-------MNIVDAL---QASRKPVIAYVGGQAASAGY 73 (161)
T ss_pred EEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHH-------HHHHHHH---HHhCCCEEEEECChhHHHHH
Confidence 347788888888999998776543 47777899998754321 2234444 44569999999999999999
Q ss_pred hhhccccEEEEEcCceEEEeCHH
Q 006153 182 LAIGCANKLLMLENAVFYVASPE 204 (658)
Q Consensus 182 lalg~aD~ViA~p~A~i~VmgPE 204 (658)
+.+..||.+||.|++.+++.+|.
T Consensus 74 ~la~~~d~~~~~~~a~~~~~g~~ 96 (161)
T cd00394 74 YIATAANKIVMAPGTRVGSHGPI 96 (161)
T ss_pred HHHhCCCEEEECCCCEEEEeeeE
Confidence 99999999999999999885553
No 120
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.55 E-value=1.6e-06 Score=98.96 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCC-CCC-CChhHHHhch---------HH----HHHHHHHHHhcCCCC
Q 006153 105 FGMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTP-GAY-ADLKSEELGQ---------GE----AIAHNLRTMFGLKVP 167 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAd--k~~lPIV~LiDTp-Ga~-~g~~aE~~Gq---------~~----aiA~~l~als~a~VP 167 (658)
..++++..+....++++.+. ...+-+|.|...+ .++ .|.+....+. .. ........+..+++|
T Consensus 46 ~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkP 125 (550)
T PRK08184 46 LNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLK 125 (550)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 45789999999999998775 3567788887654 333 3433222110 00 001122345568999
Q ss_pred EEEEEcCCCchhhhhhhccccEEEEEcC--ceEEE-------eCHHHHHHHhhh--hccCchHHHHh----hcccHHHHH
Q 006153 168 IISIVIGEGGSGGALAIGCANKLLMLEN--AVFYV-------ASPEACAAILWK--SAKASPKAAEK----LKITGSELC 232 (658)
Q Consensus 168 iISVViG~a~GGGAlalg~aD~ViA~p~--A~i~V-------mgPEgaAsIl~r--d~~~~~eAaE~----~kitA~dL~ 232 (658)
+|+.|.|.|+|||+..+..||++|+.++ ++|++ +.|..+....+. .......+.+. ..+++++++
T Consensus 126 vIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~ 205 (550)
T PRK08184 126 FIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAV 205 (550)
T ss_pred EEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHH
Confidence 9999999999999999999999999987 66654 124433322222 11222233232 368999999
Q ss_pred HcCCceeeec
Q 006153 233 KLQIADGVIP 242 (658)
Q Consensus 233 ~~GlVD~IIp 242 (658)
++|+||+|+|
T Consensus 206 ~~GLVd~vv~ 215 (550)
T PRK08184 206 DWRLVDEVVK 215 (550)
T ss_pred HcCCccEeeC
Confidence 9999999994
No 121
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.37 E-value=1.3e-06 Score=88.39 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=111.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecC---CCCCCChhH-HHhch----------HH-HHHHHHHHHhcCCCCE
Q 006153 105 FGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDT---PGAYADLKS-EELGQ----------GE-AIAHNLRTMFGLKVPI 168 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDT---pGa~~g~~a-E~~Gq----------~~-aiA~~l~als~a~VPi 168 (658)
..+..|.....+.+++..|. ..++-||.|+.. .-++++-+. .-+|. .+ .+-.+.+.+...+.|+
T Consensus 40 rNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpV 119 (282)
T COG0447 40 RNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPV 119 (282)
T ss_pred hccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcce
Confidence 35566777777777777664 456889999852 113432111 11221 00 2223334455689999
Q ss_pred EEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHH-------HHhhhhccCchHHHHhh----cccHHHHHHcCCc
Q 006153 169 ISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACA-------AILWKSAKASPKAAEKL----KITGSELCKLQIA 237 (658)
Q Consensus 169 ISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaA-------sIl~rd~~~~~eAaE~~----kitA~dL~~~GlV 237 (658)
|++|.|-++|||-.....||..||.++|.|+-.+|.+.+ +++++- -+...|.|.. ..+|+++.++|+|
T Consensus 120 iA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~-VGqKkArEIwfLcR~Y~A~eal~MGlV 198 (282)
T COG0447 120 IAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARI-VGQKKAREIWFLCRQYDAEEALDMGLV 198 (282)
T ss_pred EEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHH-hhhhhhHHhhhhhhhccHHHHHhcCce
Confidence 999999999999999899999999999999998888653 555543 2344555553 5789999999999
Q ss_pred eeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006153 238 DGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKF 286 (658)
Q Consensus 238 D~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~ 286 (658)
+.|+|.. .|.....++..++...+|. +.|+-||
T Consensus 199 N~Vvp~~-------------~LE~e~v~W~~E~l~kSP~---AlR~LK~ 231 (282)
T COG0447 199 NTVVPHA-------------DLEKETVQWAREMLAKSPT---ALRMLKA 231 (282)
T ss_pred eeeccHH-------------HHHHHHHHHHHHHHhcChH---HHHHHHH
Confidence 9999653 4444555555666666666 3677776
No 122
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.37 E-value=2.3e-06 Score=86.31 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=93.4
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lAdk~--~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
.++-+.+|.+++..+....+.+..++.. .-||++.+||||..+..+ .++. .++...+.|+++++.|.|
T Consensus 35 ~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g-------~~I~---d~i~~~~~~v~t~~~G~a 104 (207)
T PRK12553 35 ERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAG-------DAIY---DTIQFIRPDVQTVCTGQA 104 (207)
T ss_pred CeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHH-------HHHH---HHHHhcCCCcEEEEEeeh
Confidence 3445677899999999988888776644 479999999999654322 1233 344456789999999999
Q ss_pred chhhhhhhcccc--EEEEEcCceEEEeCHH--HH----H------------------HHhhhhccCc-hHHHHh----hc
Q 006153 177 GSGGALAIGCAN--KLLMLENAVFYVASPE--AC----A------------------AILWKSAKAS-PKAAEK----LK 225 (658)
Q Consensus 177 ~GGGAlalg~aD--~ViA~p~A~i~VmgPE--ga----A------------------sIl~rd~~~~-~eAaE~----~k 225 (658)
.|.|++.+..|| .++|.|++.+.+-.|. +. + .+........ ....+. .-
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~ 184 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKW 184 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcc
Confidence 999999988888 5899999999887765 20 0 0110000011 111111 24
Q ss_pred ccHHHHHHcCCceeeec
Q 006153 226 ITGSELCKLQIADGVIP 242 (658)
Q Consensus 226 itA~dL~~~GlVD~IIp 242 (658)
+||+++++.|+||.|+.
T Consensus 185 lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 185 LTAEEAKDYGLVDQIIT 201 (207)
T ss_pred ccHHHHHHcCCccEEcC
Confidence 78999999999999994
No 123
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.33 E-value=4.2e-06 Score=83.97 Aligned_cols=134 Identities=20% Similarity=0.226 Sum_probs=90.0
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lAdk--~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+++-+.+|.+++..+....+-+...+. ..-||.+++||||..+..+ .+|...+ ...+.|+++++.|.|
T Consensus 31 ~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g-------~~I~d~i---~~~~~~v~t~~~G~a 100 (200)
T PRK00277 31 ERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG-------LAIYDTM---QFIKPDVSTICIGQA 100 (200)
T ss_pred CcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHH-------HHHHHHH---HhcCCCEEEEEEeEe
Confidence 444567788888888887777765553 3469999999999764432 1244443 445789999999999
Q ss_pred chhhhhhhcc--ccEEEEEcCceEEEeCHHHHH----------------------HHhh-hhccCchHHHHh----hccc
Q 006153 177 GSGGALAIGC--ANKLLMLENAVFYVASPEACA----------------------AILW-KSAKASPKAAEK----LKIT 227 (658)
Q Consensus 177 ~GGGAlalg~--aD~ViA~p~A~i~VmgPEgaA----------------------sIl~-rd~~~~~eAaE~----~kit 227 (658)
.|+|++.+.. .+.++|.|++.+.+..|-+.. .+.- +.........+. .-++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ls 180 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMS 180 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcccc
Confidence 9999987754 457999999999887664221 0000 000001111111 2478
Q ss_pred HHHHHHcCCceeeec
Q 006153 228 GSELCKLQIADGVIP 242 (658)
Q Consensus 228 A~dL~~~GlVD~IIp 242 (658)
|+++++.|+||+|+.
T Consensus 181 a~EA~e~GliD~Ii~ 195 (200)
T PRK00277 181 AEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHcCCccEEee
Confidence 999999999999994
No 124
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=98.29 E-value=1.1e-05 Score=81.39 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHhhh-cCCcEEEE-ecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhh
Q 006153 106 GMPTPHGYRKALRMMYYADH-HGFPIVTF-IDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALA 183 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk-~~lPIV~L-iDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAla 183 (658)
+..++.++....+.++.|.+ .++-.|+| ++++|..... ...+...+..+.. ++|+|+.|.|.|.|||.+.
T Consensus 20 ~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~-------~~~l~~~l~~~~~-~KpViA~v~g~a~s~gy~l 91 (214)
T cd07022 20 ASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAG-------VFELADAIRAARA-GKPIVAFVNGLAASAAYWI 91 (214)
T ss_pred CCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHH-------HHHHHHHHHHHhc-CCCEEEEECCchhhHHHHH
Confidence 34566778888888877654 34544444 7888754321 1235556666655 7999999999999999999
Q ss_pred hccccEEEEEcCceEEE
Q 006153 184 IGCANKLLMLENAVFYV 200 (658)
Q Consensus 184 lg~aD~ViA~p~A~i~V 200 (658)
+..||++||.|+|.++.
T Consensus 92 A~~aD~i~a~~~a~~g~ 108 (214)
T cd07022 92 ASAADRIVVTPTAGVGS 108 (214)
T ss_pred HhcCCEEEEcCCCeEEe
Confidence 99999999999997644
No 125
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.24 E-value=1.2e-05 Score=78.10 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=69.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q 006153 103 RNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGG 180 (658)
Q Consensus 103 ~~gGsl~p~g~rKa~R~i~lAdk~--~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGG 180 (658)
+..|.+++..+....+.+..++.. .-||+..+||||..+... .++...+ ...+.|+++++.|.|.|+|
T Consensus 4 ~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~-------~~i~~~i---~~~~~~v~~~~~g~aaS~~ 73 (162)
T cd07013 4 MLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG-------MAIYDTI---KFIKADVVTIIDGLAASMG 73 (162)
T ss_pred EEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH-------HHHHHHH---HhcCCCceEEEEeehhhHH
Confidence 456778888888888888776644 369999999999764322 2244444 4467899999999999999
Q ss_pred hhhhcccc--EEEEEcCceEEEeCH
Q 006153 181 ALAIGCAN--KLLMLENAVFYVASP 203 (658)
Q Consensus 181 Alalg~aD--~ViA~p~A~i~VmgP 203 (658)
++.++.+| ..++.|++.+.+-.|
T Consensus 74 ~~i~~a~~~g~r~~~p~a~~~ih~~ 98 (162)
T cd07013 74 SVIAMAGAKGKRFILPNAMMMIHQP 98 (162)
T ss_pred HHHHHcCCCCcEEEecCEEEEEccC
Confidence 99998888 688889998877544
No 126
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.23 E-value=1.3e-05 Score=80.51 Aligned_cols=133 Identities=20% Similarity=0.130 Sum_probs=90.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhh-c-CCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCc
Q 006153 100 NIQRNFGMPTPHGYRKALRMMYYADH-H-GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG 177 (658)
Q Consensus 100 ~~~~~gGsl~p~g~rKa~R~i~lAdk-~-~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~ 177 (658)
++-+..|.+++..+.-+.+.+..++. . .-||++.+||||..+..+ .+|... +...+.|++++|.|.|.
T Consensus 24 r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag-------~aI~d~---i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 24 RSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAG-------FAIFNM---IRFVKPKVFTIGVGLVA 93 (197)
T ss_pred cEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHH-------HHHHHH---HHhCCCCEEEEEEeeeH
Confidence 33456688888888887777766554 3 479999999999754322 124444 44567899999999999
Q ss_pred hhhhhhhccccE--EEEEcCceEEEeCHHHHH----HHhhhhc-----------------cC-chHHHHh-----hcccH
Q 006153 178 SGGALAIGCANK--LLMLENAVFYVASPEACA----AILWKSA-----------------KA-SPKAAEK-----LKITG 228 (658)
Q Consensus 178 GGGAlalg~aD~--ViA~p~A~i~VmgPEgaA----sIl~rd~-----------------~~-~~eAaE~-----~kitA 228 (658)
|.|++.+..||. ++|.|++.+.+.-|.+.. .-+.... .+ -.+..+. .-+||
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta 173 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDS 173 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCH
Confidence 999999888774 789999988776665321 1111000 00 0111111 24789
Q ss_pred HHHHHcCCceeeec
Q 006153 229 SELCKLQIADGVIP 242 (658)
Q Consensus 229 ~dL~~~GlVD~IIp 242 (658)
+++++.|+||+|++
T Consensus 174 ~EA~~yGliD~I~~ 187 (197)
T PRK14512 174 SSAVKYGLVFEVVE 187 (197)
T ss_pred HHHHHcCCccEeec
Confidence 99999999999994
No 127
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=98.19 E-value=1.3e-05 Score=80.35 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhh-cC-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q 006153 112 GYRKALRMMYYADH-HG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK 189 (658)
Q Consensus 112 g~rKa~R~i~lAdk-~~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ 189 (658)
+++...+.++.|.. .+ ..||+-+|+||..+... ..+...+..+. .++|+|+.+.|.|.|||.+.+..||.
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~-------~~l~~~i~~~~-~~kpvia~v~g~a~s~g~~la~aaD~ 85 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVAS-------EEIYEKLKKLK-AKKPVVASMGGVAASGGYYIAMAADE 85 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHH-------HHHHHHHHHhc-CCCCEEEEECCccchHHHHHHhcCCE
Confidence 35566777766653 33 47888899998765322 23445555444 46999999999999999999999999
Q ss_pred EEEEcCceEEE
Q 006153 190 LLMLENAVFYV 200 (658)
Q Consensus 190 ViA~p~A~i~V 200 (658)
++|.|++.++.
T Consensus 86 i~a~p~a~vg~ 96 (207)
T TIGR00706 86 IVANPGTITGS 96 (207)
T ss_pred EEECCCCeEEe
Confidence 99999987544
No 128
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.18 E-value=1.2e-05 Score=81.42 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhc-CCc-EEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhh
Q 006153 105 FGMPTPHGYRKALRMMYYADHH-GFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGAL 182 (658)
Q Consensus 105 gGsl~p~g~rKa~R~i~lAdk~-~lP-IV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAl 182 (658)
++..++.++....+.++.|.+. ++- ||.-+|+||+.+. ..+ .+...+..+...++|+|+.+.| +.|||.+
T Consensus 23 ~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~-~~~------el~~~i~~~~~~~kpVia~~~~-~~sggy~ 94 (222)
T cd07018 23 GGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLA-KLE------ELRQALERFRASGKPVIAYADG-YSQGQYY 94 (222)
T ss_pred cCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHH-HHH------HHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence 3455567788888888877654 454 5555799998332 222 3466676776678999999987 7788888
Q ss_pred hhccccEEEEEcCceEEEeCH
Q 006153 183 AIGCANKLLMLENAVFYVASP 203 (658)
Q Consensus 183 alg~aD~ViA~p~A~i~VmgP 203 (658)
.++.||.+||.|++.++.+|.
T Consensus 95 lasaad~I~a~p~~~vg~iGv 115 (222)
T cd07018 95 LASAADEIYLNPSGSVELTGL 115 (222)
T ss_pred hhhhCCEEEECCCceEEeecc
Confidence 888999999999998877653
No 129
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.13 E-value=2.2e-05 Score=79.08 Aligned_cols=135 Identities=18% Similarity=0.137 Sum_probs=92.5
Q ss_pred cccccccCCCCCHHHHHHHHHHH-HHhhh-cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 98 KENIQRNFGMPTPHGYRKALRMM-YYADH-HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 98 ~e~~~~~gGsl~p~g~rKa~R~i-~lAdk-~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
++++-+.+|.+.+..+..+...+ .+..+ ..-||.+++||||..+..+ .....++...+.|+.+++.|-
T Consensus 29 ~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g----------~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 29 RERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISG----------LAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred cCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhH----------HHHHHHHHhcCCCEEEEEEEe
Confidence 35666888999988887776655 44433 3579999999999765432 223344456789999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcCceEEEeCHHHH-----HHHhhhhccC-------------------chHHHHh----hc
Q 006153 176 GGSGGALAIGCAN--KLLMLENAVFYVASPEAC-----AAILWKSAKA-------------------SPKAAEK----LK 225 (658)
Q Consensus 176 a~GGGAlalg~aD--~ViA~p~A~i~VmgPEga-----AsIl~rd~~~-------------------~~eAaE~----~k 225 (658)
|.|.|++.++.++ .++|.|+|++.+--|.+. ++-+...... ..+..+. .-
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~ 178 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVF 178 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 9999999888877 689999999888655432 1111110000 0111111 24
Q ss_pred ccHHHHHHcCCceeeec
Q 006153 226 ITGSELCKLQIADGVIP 242 (658)
Q Consensus 226 itA~dL~~~GlVD~IIp 242 (658)
++|+++++.|+||+|+.
T Consensus 179 lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 179 MSATEAKAYGIVDLVAV 195 (200)
T ss_pred CCHHHHHHcCCCcEEee
Confidence 78999999999999994
No 130
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.09 E-value=1.5e-05 Score=77.82 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=68.8
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHh--hhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYA--DHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lA--dk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
++.-+..|.+++..+......+... ....-||..++||||..+.. .......+...++|+++++.|.|
T Consensus 16 ~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~----------g~~i~~~i~~~~~~v~t~~~G~a 85 (182)
T PF00574_consen 16 ERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDA----------GLAIYDAIRSSKAPVTTVVLGLA 85 (182)
T ss_dssp TTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHH----------HHHHHHHHHHSSSEEEEEEEEEE
T ss_pred CeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHH----------HHHHHHHHHhcCCCeEEEEeCcc
Confidence 4455677999999988877766433 33457999999999966432 22334445567899999999999
Q ss_pred chhhhhhhccccE--EEEEcCceEEE
Q 006153 177 GSGGALAIGCANK--LLMLENAVFYV 200 (658)
Q Consensus 177 ~GGGAlalg~aD~--ViA~p~A~i~V 200 (658)
.|.|++.+..|+. .+|.|+|.|.+
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~ 111 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMI 111 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEE
T ss_pred ccceehhhhcCCcCceeeeecCEEEe
Confidence 9999999988988 69999998866
No 131
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.08 E-value=1.2e-05 Score=78.43 Aligned_cols=96 Identities=24% Similarity=0.308 Sum_probs=73.9
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhhc--CCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lAdk~--~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
.++-+..|.+++..+......+..+... .-||+..+||||..+... ..+...+. ..+.|+++++.|-|
T Consensus 9 ~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~-------~~i~~~l~---~~~~~v~t~~~g~a 78 (171)
T cd07017 9 ERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAG-------LAIYDTMQ---YIKPPVSTICLGLA 78 (171)
T ss_pred CcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHH-------HHHHHHHH---hcCCCEEEEEEeEe
Confidence 3455677888888888888887776654 369999999999865432 23444443 45799999999999
Q ss_pred chhhhhhhcccc--EEEEEcCceEEEeCHH
Q 006153 177 GSGGALAIGCAN--KLLMLENAVFYVASPE 204 (658)
Q Consensus 177 ~GGGAlalg~aD--~ViA~p~A~i~VmgPE 204 (658)
.|+|++.++.+| .++|.|+|.+.+-.|.
T Consensus 79 aS~~~~i~~~g~~~~r~~~~~a~~~~h~~~ 108 (171)
T cd07017 79 ASMGALLLAAGTKGKRYALPNSRIMIHQPL 108 (171)
T ss_pred hhHHHHHHHcCCCCCEEEccchHHHHcCCC
Confidence 999999998999 8999999987664443
No 132
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.08 E-value=3e-05 Score=77.41 Aligned_cols=133 Identities=18% Similarity=0.230 Sum_probs=86.7
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhh--hcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYYAD--HHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~lAd--k~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+++-+.+|.+++.........+...+ ...-||++++||||..+..+ .+|...+ ...+.|+.+++.|.|
T Consensus 26 ~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g-------~~I~d~l---~~~~~~v~t~~~G~A 95 (191)
T TIGR00493 26 ERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAG-------LAIYDTM---QFIKPDVSTICIGQA 95 (191)
T ss_pred CeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHH-------HHHHHHH---HhcCCCEEEEEEEee
Confidence 34456678888877776666554444 23479999999999765432 2344444 445678889999999
Q ss_pred chhhhhhhccc--cEEEEEcCceEEEeCHHHHH-----------HHh----------h--hhccCchHHHHh----hccc
Q 006153 177 GSGGALAIGCA--NKLLMLENAVFYVASPEACA-----------AIL----------W--KSAKASPKAAEK----LKIT 227 (658)
Q Consensus 177 ~GGGAlalg~a--D~ViA~p~A~i~VmgPEgaA-----------sIl----------~--rd~~~~~eAaE~----~kit 227 (658)
.|.|++.+..+ +.++|.|+|++.+-.|.+.. ..+ + +.........+. .-+|
T Consensus 96 aSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lt 175 (191)
T TIGR00493 96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMS 175 (191)
T ss_pred ccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCc
Confidence 99988877554 46999999999887664311 000 0 000000111111 2478
Q ss_pred HHHHHHcCCceeee
Q 006153 228 GSELCKLQIADGVI 241 (658)
Q Consensus 228 A~dL~~~GlVD~II 241 (658)
|+++++.|+||.|+
T Consensus 176 a~EA~~~GliD~ii 189 (191)
T TIGR00493 176 AEEAKEYGLIDSVL 189 (191)
T ss_pred HHHHHHcCCccEEe
Confidence 99999999999998
No 133
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=98.08 E-value=1e-05 Score=80.89 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhhc-CC-cEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccc
Q 006153 110 PHGYRKALRMMYYADHH-GF-PIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCA 187 (658)
Q Consensus 110 p~g~rKa~R~i~lAdk~-~l-PIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~a 187 (658)
+.+++...+.++.+... ++ -||+-+++||..+... ..+...+..+..+++|+|+.|.|.|.|||++.+..|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~-------~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aa 88 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS-------EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAA 88 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHH-------HHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhC
Confidence 67788888888776543 34 4566688988755321 235566777777899999999999999999999999
Q ss_pred cEEEEEcCceEEEeCHH
Q 006153 188 NKLLMLENAVFYVASPE 204 (658)
Q Consensus 188 D~ViA~p~A~i~VmgPE 204 (658)
|+++|.|++.++..|.-
T Consensus 89 D~i~a~~~s~~g~iG~~ 105 (208)
T cd07023 89 DKIVANPTTITGSIGVI 105 (208)
T ss_pred CEEEECCCCeEEeCcEE
Confidence 99999999998877643
No 134
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.06 E-value=2.4e-05 Score=80.01 Aligned_cols=136 Identities=18% Similarity=0.121 Sum_probs=93.0
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 97 TKENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 97 ~~e~~~~~gGsl~p~g~rKa~R~i~lAdk--~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG 174 (658)
.++++-|.+|.++...+..+...+.+-+. .+-||.+++|+||..+..+. +|. .++...+.|+.+++.|
T Consensus 52 l~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGl-------aIy---d~m~~~~~~V~tv~~G 121 (221)
T PRK14514 52 MMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGL-------GIY---DTMQFISSDVATICTG 121 (221)
T ss_pred hhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHH-------HHH---HHHHhcCCCEEEEEEE
Confidence 34667788999999988887775543332 35799999999997654331 233 4445567899999999
Q ss_pred CCchhhhhhhccccE--EEEEcCceEEEeCHHHHH------------HHhhh-----------hccCchHHHHh----hc
Q 006153 175 EGGSGGALAIGCANK--LLMLENAVFYVASPEACA------------AILWK-----------SAKASPKAAEK----LK 225 (658)
Q Consensus 175 ~a~GGGAlalg~aD~--ViA~p~A~i~VmgPEgaA------------sIl~r-----------d~~~~~eAaE~----~k 225 (658)
-|.|.|++.++.+|. ++|.|+|++.+--|-+.+ .+..- ......+..+. .-
T Consensus 122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~w 201 (221)
T PRK14514 122 MAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYW 201 (221)
T ss_pred EehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcc
Confidence 999999999888875 899999999875554311 01000 00000111111 24
Q ss_pred ccHHHHHHcCCceeeec
Q 006153 226 ITGSELCKLQIADGVIP 242 (658)
Q Consensus 226 itA~dL~~~GlVD~IIp 242 (658)
+||+++++.|+||.|+.
T Consensus 202 mtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 202 MTAQEAKEYGMIDEVLI 218 (221)
T ss_pred CCHHHHHHcCCccEEee
Confidence 78999999999999994
No 135
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.04 E-value=3e-05 Score=77.95 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=92.0
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 98 KENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 98 ~e~~~~~gGsl~p~g~rKa~R~i~lAdk--~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
.+++-|.+|.+++..+..+...+.+.+. ..-||.+++|+||..+..+. +|.. ++...+.|+.+++.|-
T Consensus 24 ~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~-------aIyd---~m~~~~~~V~t~~~G~ 93 (196)
T PRK12551 24 RERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL-------GIFD---TMQHVKPDVHTVCVGL 93 (196)
T ss_pred cCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHH-------HHHH---HHHhcCCCEEEEEEEE
Confidence 3556688888999998888877765543 24799999999997654321 2444 4445678999999999
Q ss_pred Cchhhhhhhcccc--EEEEEcCceEEEeCHHHHH------------HHh---------h--hhccCchHHHHh----hcc
Q 006153 176 GGSGGALAIGCAN--KLLMLENAVFYVASPEACA------------AIL---------W--KSAKASPKAAEK----LKI 226 (658)
Q Consensus 176 a~GGGAlalg~aD--~ViA~p~A~i~VmgPEgaA------------sIl---------~--rd~~~~~eAaE~----~ki 226 (658)
|.|.|++.++.++ .++|.|+|++.+--|-+.+ .+. + +......+..+. .-+
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~m 173 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFM 173 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCC
Confidence 9999999887776 4789999999885554211 000 0 000000111111 247
Q ss_pred cHHHHHHcCCceeeec
Q 006153 227 TGSELCKLQIADGVIP 242 (658)
Q Consensus 227 tA~dL~~~GlVD~IIp 242 (658)
+|+++++.|+||.|+.
T Consensus 174 sa~EA~eyGliD~I~~ 189 (196)
T PRK12551 174 SPSEAVEYGLIDLVID 189 (196)
T ss_pred CHHHHHHcCCCcEEec
Confidence 8999999999999994
No 136
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.1e-05 Score=85.50 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhcC-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC---Cchhhh
Q 006153 106 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE---GGSGGA 181 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~---a~GGGA 181 (658)
|.++|..+....|.++.|.+.+ -.||...||||.... .+-+++.++.++++|++..|.=+ |.|.|+
T Consensus 35 g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl~~----------sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGt 104 (436)
T COG1030 35 GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGLLD----------SMRQIVRAILNSPVPVIGYVVPDGARAASAGT 104 (436)
T ss_pred CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCchHH----------HHHHHHHHHHcCCCCEEEEEcCCCcchhchhh
Confidence 7899999999999999999988 799999999997543 23456677788999988888844 889999
Q ss_pred hhhccccEEEEEcCceEEEeCHHHHH--------------HHh---hhhccCchHHHHh-----hcccHHHHHHcCCcee
Q 006153 182 LAIGCANKLLMLENAVFYVASPEACA--------------AIL---WKSAKASPKAAEK-----LKITGSELCKLQIADG 239 (658)
Q Consensus 182 lalg~aD~ViA~p~A~i~VmgPEgaA--------------sIl---~rd~~~~~eAaE~-----~kitA~dL~~~GlVD~ 239 (658)
|.+..||+.+|.|++.++...|-... .++ -+...+-++.++. .-++++++++.|++|-
T Consensus 105 yI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~ 184 (436)
T COG1030 105 YILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDL 184 (436)
T ss_pred HHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCcccc
Confidence 99999999999999988875543221 000 0111122334433 3678999999999998
Q ss_pred ee
Q 006153 240 VI 241 (658)
Q Consensus 240 II 241 (658)
|-
T Consensus 185 iA 186 (436)
T COG1030 185 IA 186 (436)
T ss_pred cc
Confidence 86
No 137
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.91 E-value=6e-05 Score=76.10 Aligned_cols=136 Identities=20% Similarity=0.153 Sum_probs=91.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhh--cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 98 KENIQRNFGMPTPHGYRKALRMMYYADH--HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 98 ~e~~~~~gGsl~p~g~rKa~R~i~lAdk--~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
++++-|.+|.+.++.+..+...+-+.+. ..-||.+++|+||..+..+ -+|.. ++...+.|+.+++.|-
T Consensus 26 ~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G-------laIyd---~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 26 KDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG-------LAIYD---TMRYIKAPVSTICVGI 95 (201)
T ss_pred hCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH-------HHHHH---HHHhcCCCEEEEEEee
Confidence 4566688899999988887666644443 2479999999999765432 12444 4445678999999999
Q ss_pred CchhhhhhhccccE--EEEEcCceEEEeCHHHH----HHHhhh-------------------hccCchHHHHh----hcc
Q 006153 176 GGSGGALAIGCANK--LLMLENAVFYVASPEAC----AAILWK-------------------SAKASPKAAEK----LKI 226 (658)
Q Consensus 176 a~GGGAlalg~aD~--ViA~p~A~i~VmgPEga----AsIl~r-------------------d~~~~~eAaE~----~ki 226 (658)
|.|.|++.+..+|. ++|.|+|++.+=-|.+. +.-+.. ......+..+. .-+
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~m 175 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFM 175 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCccc
Confidence 99999998877775 89999999877554321 111100 00001111111 247
Q ss_pred cHHHHHHcCCceeeecC
Q 006153 227 TGSELCKLQIADGVIPE 243 (658)
Q Consensus 227 tA~dL~~~GlVD~IIpe 243 (658)
||+++++.|+||+|+..
T Consensus 176 sa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 176 SPEEAKAYGLIDSVIEP 192 (201)
T ss_pred CHHHHHHcCCCcEEecc
Confidence 89999999999999954
No 138
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.90 E-value=0.00011 Score=84.84 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhhc-C-CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q 006153 112 GYRKALRMMYYADHH-G-FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK 189 (658)
Q Consensus 112 g~rKa~R~i~lAdk~-~-lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ 189 (658)
++....+.++.|... + ..||.-+|+||..... . ..+.+.+..+...++|+|+.+.|.|.|||.|+++.||.
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~a-s------e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~ 402 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFA-S------EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADY 402 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHH-H------HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCE
Confidence 445566666665443 4 3789999999965322 1 23556666676778999999999999999999999999
Q ss_pred EEEEcCceE
Q 006153 190 LLMLENAVF 198 (658)
Q Consensus 190 ViA~p~A~i 198 (658)
+||.|++.+
T Consensus 403 I~a~p~t~~ 411 (584)
T TIGR00705 403 IVASPNTIT 411 (584)
T ss_pred EEECCCCee
Confidence 999999865
No 139
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.90 E-value=4.5e-05 Score=76.79 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhhhc-CCc-EEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcccc
Q 006153 111 HGYRKALRMMYYADHH-GFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCAN 188 (658)
Q Consensus 111 ~g~rKa~R~i~lAdk~-~lP-IV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD 188 (658)
.++.-..+.++.+... ++. ||.-++++|..+.... .+...+..+..+++|+|+.|.|.|.|||++.+..||
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~-------~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD 93 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASE-------VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPAN 93 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHH-------HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCC
Confidence 3567777777766544 554 5555899998764322 234556667778999999999999999999999999
Q ss_pred EEEEEcCceEEEeCH
Q 006153 189 KLLMLENAVFYVASP 203 (658)
Q Consensus 189 ~ViA~p~A~i~VmgP 203 (658)
++||.|++.++.+|.
T Consensus 94 ~i~a~~~a~~gsiGv 108 (211)
T cd07019 94 YIVANPSTLTGSIGI 108 (211)
T ss_pred EEEEcCCCEEEEeEE
Confidence 999999998876653
No 140
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.79 E-value=0.00019 Score=72.54 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=94.0
Q ss_pred CCeEEEEEeeecCCCccccccccCCCCCHHHHHHH-HHHHHHhhhcCCcEEEEecCCCC-CCChhHHH----hc------
Q 006153 82 DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKA-LRMMYYADHHGFPIVTFIDTPGA-YADLKSEE----LG------ 149 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa-~R~i~lAdk~~lPIV~LiDTpGa-~~g~~aE~----~G------ 149 (658)
+|.+-.++-|++. + .+++-.+..-. ..+...++...+.+|.+...+-. ..|...-+ .|
T Consensus 40 ~gvR~i~l~npKk--------~--NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~hae 109 (287)
T KOG1682|consen 40 NGVREITLNNPKK--------L--NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAE 109 (287)
T ss_pred cceeeeeecCccc--------c--chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHH
Confidence 4555556666654 2 33433332222 23334555566777777765553 33433222 11
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE---------eCHHHH-HHHhhhhccCchH
Q 006153 150 QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV---------ASPEAC-AAILWKSAKASPK 219 (658)
Q Consensus 150 q~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V---------mgPEga-AsIl~rd~~~~~e 219 (658)
..+.....+.-+.+.+||+|+-|+|.+...|.-..++||++++..++.|++ ..|.++ ++++-| +.
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpR-----kv 184 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPR-----KV 184 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcch-----hH
Confidence 233455556677889999999999999988988889999999998877654 223322 233222 33
Q ss_pred HHHh----hcccHHHHHHcCCceeeecCC
Q 006153 220 AAEK----LKITGSELCKLQIADGVIPEP 244 (658)
Q Consensus 220 AaE~----~kitA~dL~~~GlVD~IIpe~ 244 (658)
++.+ +++++++++..|++..|||+.
T Consensus 185 a~~ML~Tg~Pi~~eeAl~sGlvskvVp~~ 213 (287)
T KOG1682|consen 185 AAYMLMTGLPITGEEALISGLVSKVVPAE 213 (287)
T ss_pred HHHHHHhCCCCchHHHHHhhhhhhcCCHH
Confidence 4444 589999999999999999764
No 141
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.65 E-value=0.00026 Score=74.39 Aligned_cols=88 Identities=28% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhc
Q 006153 106 GMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIG 185 (658)
Q Consensus 106 Gsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg 185 (658)
+.++......+.|.++.+.+ +.||..+++|||..+... ..|++.+. ....|+.++|.+.|.|||++.+.
T Consensus 70 ~~I~i~dse~v~raI~~~~~-~~~IdLii~TpGG~v~AA-------~~I~~~l~---~~~~~v~v~VP~~A~SAGTlIAL 138 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPK-DKPIDLIIHTPGGLVDAA-------EQIARALR---EHPAKVTVIVPHYAMSAGTLIAL 138 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCC-CCceEEEEECCCCcHHHH-------HHHHHHHH---hCCCCEEEEECcccccHHHHHHH
Confidence 56777888899999998875 459999999999875422 23555554 46789999999999999999999
Q ss_pred cccEEEEEcCceEEEeCHH
Q 006153 186 CANKLLMLENAVFYVASPE 204 (658)
Q Consensus 186 ~aD~ViA~p~A~i~VmgPE 204 (658)
.||.++|.|+|.+|.+.|-
T Consensus 139 aADeIvM~p~a~LGpiDPq 157 (285)
T PF01972_consen 139 AADEIVMGPGAVLGPIDPQ 157 (285)
T ss_pred hCCeEEECCCCccCCCCcc
Confidence 9999999999999998886
No 142
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00016 Score=77.49 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q 006153 107 MPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC 186 (658)
Q Consensus 107 sl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~ 186 (658)
..+.....+..|.+.... .--+||..+||||..+... ..|++.+..+...+ |+++.|-+-|.|||.|+++.
T Consensus 79 ~~~~~~~~~~l~~~~~~~-~vk~vvL~inSPGG~v~as-------~~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~a 149 (317)
T COG0616 79 FIGGDDIEEILRAARADP-SVKAVVLRINSPGGSVVAS-------ELIARALKRLRAKK-PVVVSVGGYAASGGYYIALA 149 (317)
T ss_pred cccHHHHHHHHHHHhcCC-CCceEEEEEECcCCchhHH-------HHHHHHHHHHhhcC-CEEEEECCeecchhhhhhcc
Confidence 344555555555444322 2358999999999876532 34788888888777 99999999999999999999
Q ss_pred ccEEEEEcCceEEEeCHHH
Q 006153 187 ANKLLMLENAVFYVASPEA 205 (658)
Q Consensus 187 aD~ViA~p~A~i~VmgPEg 205 (658)
||.+||.|++.+|-+|+-.
T Consensus 150 Ad~I~a~p~si~GSIGVi~ 168 (317)
T COG0616 150 ADKIVADPSSITGSIGVIS 168 (317)
T ss_pred CCEEEecCCceeeeceeEE
Confidence 9999999999988887663
No 143
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.55 E-value=0.00044 Score=69.85 Aligned_cols=135 Identities=22% Similarity=0.266 Sum_probs=88.1
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH--hhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 99 ENIQRNFGMPTPHGYRKALRMMYY--ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 99 e~~~~~gGsl~p~g~rKa~R~i~l--Adk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+++-+.+|.++.+.+..+...+-+ ++...-||...+||||..+..+. +|+..+. ..+.|+.++++|-+
T Consensus 27 ~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~-------AIydtm~---~ik~~V~ti~~G~A 96 (200)
T COG0740 27 ERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL-------AIYDTMQ---FIKPPVSTICMGQA 96 (200)
T ss_pred ccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH-------HHHHHHH---hcCCCeEEEEecHH
Confidence 444466677777755555554432 33346799999999997765432 3555554 46799999999999
Q ss_pred chhhhhhhccccEE--EEEcCceEEEeCHHHHHH------------Hhhhhc-----------cCchHHHHh----hccc
Q 006153 177 GSGGALAIGCANKL--LMLENAVFYVASPEACAA------------ILWKSA-----------KASPKAAEK----LKIT 227 (658)
Q Consensus 177 ~GGGAlalg~aD~V--iA~p~A~i~VmgPEgaAs------------Il~rd~-----------~~~~eAaE~----~kit 227 (658)
.|-|++.+..++.- +++|+|++-+=.|.|.+. ++.-.. ...++-... .-++
T Consensus 97 aSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~ms 176 (200)
T COG0740 97 ASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMS 176 (200)
T ss_pred HhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCC
Confidence 99999988776654 999999997755553221 110000 000010111 2468
Q ss_pred HHHHHHcCCceeeecC
Q 006153 228 GSELCKLQIADGVIPE 243 (658)
Q Consensus 228 A~dL~~~GlVD~IIpe 243 (658)
|+++++.|+||.|+..
T Consensus 177 a~eA~~yGLiD~V~~~ 192 (200)
T COG0740 177 AEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHHHHcCCcceeccc
Confidence 9999999999999954
No 144
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.53 E-value=0.00037 Score=71.46 Aligned_cols=141 Identities=20% Similarity=0.149 Sum_probs=84.0
Q ss_pred ccccccCCCCCHH----------HHHHHHHHH-HHhh-hcCCcEEEEecCCCCCCChh--HHHhchHHHHHHHHHHHhcC
Q 006153 99 ENIQRNFGMPTPH----------GYRKALRMM-YYAD-HHGFPIVTFIDTPGAYADLK--SEELGQGEAIAHNLRTMFGL 164 (658)
Q Consensus 99 e~~~~~gGsl~p~----------g~rKa~R~i-~lAd-k~~lPIV~LiDTpGa~~g~~--aE~~Gq~~aiA~~l~als~a 164 (658)
+++-+.+|.+.+. .+..+...+ -+.. ...-||-++||+||...-.+ ......+-+|... |...
T Consensus 30 ~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~---m~~i 106 (222)
T PRK12552 30 ERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDT---MRYI 106 (222)
T ss_pred CCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHH---HHhc
Confidence 3344555555555 555544333 3332 23579999999999654221 1001112234444 4456
Q ss_pred CCCEEEEEcCCCchhhhhhhccccE--EEEEcCceEEEeCHHHHH----HHhhhhccC-------------------chH
Q 006153 165 KVPIISIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPEACA----AILWKSAKA-------------------SPK 219 (658)
Q Consensus 165 ~VPiISVViG~a~GGGAlalg~aD~--ViA~p~A~i~VmgPEgaA----sIl~rd~~~-------------------~~e 219 (658)
+-|+.++++|-|.|.|++.++.++. ++|+|+|++.+=-|.+.+ .-+...... ..+
T Consensus 107 k~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~ 186 (222)
T PRK12552 107 KPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEK 186 (222)
T ss_pred CCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 6799999999999999998888875 789999998874443221 111110000 011
Q ss_pred HHHh----hcccHHHHHHcCCceeeec
Q 006153 220 AAEK----LKITGSELCKLQIADGVIP 242 (658)
Q Consensus 220 AaE~----~kitA~dL~~~GlVD~IIp 242 (658)
-.+. .-+||+++++.|+||.|+.
T Consensus 187 I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 187 LSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 1111 2478999999999999994
No 145
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.36 E-value=0.00082 Score=72.65 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEE
Q 006153 120 MYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFY 199 (658)
Q Consensus 120 i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~ 199 (658)
++.|... --||.-+||||..+.... .++..+..+...++|+++.+-+-|.+||.|+++.||.|||.|.+.++
T Consensus 117 l~~A~~~-~aVvLridSpGG~v~~s~-------~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vG 188 (330)
T PRK11778 117 LAVAKPG-DEVLLRLESPGGVVHGYG-------LAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVG 188 (330)
T ss_pred HHhccCC-CeEEEEEeCCCCchhHHH-------HHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEE
Confidence 3444432 359999999998765321 13344566677889999999999999999999999999999999888
Q ss_pred EeCHH
Q 006153 200 VASPE 204 (658)
Q Consensus 200 VmgPE 204 (658)
.+|.-
T Consensus 189 SIGVi 193 (330)
T PRK11778 189 SIGVV 193 (330)
T ss_pred eeeee
Confidence 77753
No 146
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.35 E-value=0.00062 Score=69.99 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=97.1
Q ss_pred EEEEeeecCCCccccccccCCCCCHHHHHHHHHHHH-HhhhcCCcEEEEecCCCCCC-Chh---HHHh------------
Q 006153 86 YMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMY-YADHHGFPIVTFIDTPGAYA-DLK---SEEL------------ 148 (658)
Q Consensus 86 V~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~-lAdk~~lPIV~LiDTpGa~~-g~~---aE~~------------ 148 (658)
.-|.-|+|. .+.+++-...+..-..++ ++......+|.|...|-.+. |.+ +...
T Consensus 33 ~hv~lnRPs---------k~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR 103 (292)
T KOG1681|consen 33 YHVQLNRPS---------KLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVAR 103 (292)
T ss_pred EEEEecCcc---------hhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhh
Confidence 446666664 456676677777777775 56666788888887665444 222 1111
Q ss_pred -c-----hHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE----eCHHHHHHHhhhhcc--C
Q 006153 149 -G-----QGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV----ASPEACAAILWKSAK--A 216 (658)
Q Consensus 149 -G-----q~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V----mgPEgaAsIl~rd~~--~ 216 (658)
| ....+...+.++-+++.|+|+.|.|.|+|||.-.+-.||+.|++++|.|+| +|-.+-...+-|-+. +
T Consensus 104 ~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVG 183 (292)
T KOG1681|consen 104 KGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVG 183 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhc
Confidence 1 111233344566789999999999999999999888899999999999988 332222222222111 1
Q ss_pred -----chHHHHhhcccHHHHHHcCCceeeec
Q 006153 217 -----SPKAAEKLKITGSELCKLQIADGVIP 242 (658)
Q Consensus 217 -----~~eAaE~~kitA~dL~~~GlVD~IIp 242 (658)
.+-+..+-++.|.++++.|+|.+|+|
T Consensus 184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~ 214 (292)
T KOG1681|consen 184 NQSLARELAFTARKFSADEALDSGLVSRVFP 214 (292)
T ss_pred chHHHHHHHhhhhhcchhhhhhcCcchhhcC
Confidence 01123345788899999999999996
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0013 Score=68.37 Aligned_cols=137 Identities=20% Similarity=0.213 Sum_probs=93.6
Q ss_pred cccccccCCCCCHHHHHHHHHHH-HH-hhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 98 KENIQRNFGMPTPHGYRKALRMM-YY-ADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 98 ~e~~~~~gGsl~p~g~rKa~R~i-~l-Adk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
++++-|.|+.+.+.....+...+ -+ ++....||..++|+||.....+ -+|+..+ .-++-|+-++.+|-
T Consensus 91 reRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag-------lAIYDtM---q~ik~~V~Tic~G~ 160 (275)
T KOG0840|consen 91 RERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG-------LAIYDTM---QYIKPDVSTICVGL 160 (275)
T ss_pred HhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh-------hhHHHHH---HhhCCCceeeehhh
Confidence 47788999999988877655444 33 4456689999999999877422 2355444 44678888889999
Q ss_pred Cchhhhhhhcc--ccEEEEEcCceEEEeCHHHHHHH----hhhhccCc-------------------hHHHHh----hcc
Q 006153 176 GGSGGALAIGC--ANKLLMLENAVFYVASPEACAAI----LWKSAKAS-------------------PKAAEK----LKI 226 (658)
Q Consensus 176 a~GGGAlalg~--aD~ViA~p~A~i~VmgPEgaAsI----l~rd~~~~-------------------~eAaE~----~ki 226 (658)
|+|-|++.++. -...++.|++++.+--|-+.++- ++...... ++-.+. ..+
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fm 240 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFM 240 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccC
Confidence 99988886643 56899999999988666544321 11111111 000111 146
Q ss_pred cHHHHHHcCCceeeecCC
Q 006153 227 TGSELCKLQIADGVIPEP 244 (658)
Q Consensus 227 tA~dL~~~GlVD~IIpe~ 244 (658)
+|.++.+.|+||.|+..|
T Consensus 241 sa~EA~eyGliD~v~~~p 258 (275)
T KOG0840|consen 241 SAEEAKEYGLIDKVIDHP 258 (275)
T ss_pred CHHHHHHhcchhhhhcCC
Confidence 899999999999999754
No 148
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.19 E-value=0.0015 Score=80.16 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=111.9
Q ss_pred HHHHhhhcc---cceEccCCCCCCCCCceEEEEEEE------CCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHH
Q 006153 49 LDHVFNITE---KFVELHGDRAGYDDPAIVTGIGSM------DGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRM 119 (658)
Q Consensus 49 re~I~~L~D---~F~EL~gd~~~~dD~aVVtG~GrI------~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~ 119 (658)
-.+-+.++| ..+|+.... +..+=++|.=.-++ .|+.+.|||||-+ ++.|+.||..-.-..++
T Consensus 1503 f~~~ELV~de~g~L~~vnR~p-G~N~~GMVAw~~~~~TpEyP~Gr~~iVIgNDiT--------fqiGSFGp~ED~lF~~a 1573 (2196)
T KOG0368|consen 1503 FQVKELVLDENGELTEVNREP-GLNSCGMVAWKLTVKTPEYPEGRDLIVIGNDVT--------FQIGSFGPREDLLFLAA 1573 (2196)
T ss_pred heeeeeeecCCCcEEEeccCC-CCCcceeEEEEEEecCCCCCCCceEEEEeccce--------EeccCCCChHHHHHHHH
Confidence 334455555 455554222 22233444444444 6999999999998 89999999999999999
Q ss_pred HHHhhhcCCcEEEEecCCCCCCChhHHHh---------------------------------------------------
Q 006153 120 MYYADHHGFPIVTFIDTPGAYADLKSEEL--------------------------------------------------- 148 (658)
Q Consensus 120 i~lAdk~~lPIV~LiDTpGa~~g~~aE~~--------------------------------------------------- 148 (658)
-++|.+.++|-|++....||++|...|-.
T Consensus 1574 selAR~~~iPrIylaaNSGARIGlAeei~~lfkVaw~d~~~P~kgF~YlYlt~ed~~ri~~~~v~~e~~~~~GE~R~~I~ 1653 (2196)
T KOG0368|consen 1574 SELAREKGIPRIYLAANSGARIGLAEEIKPLFKVAWVDEDDPEKGFQYLYLTPEDYERIGSSVVHCEVVEESGEERLKIK 1653 (2196)
T ss_pred HHHHHhcCCCeEEEeccCccccccHHHHHHHheeeccCCCCcCCCceEEEECHHHHHHhhcccceeEEEeecCcceEEEE
Confidence 99999999999999999999999754421
Q ss_pred -------ch-------HHHHHHHH-HHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHHHHHHHhhhh
Q 006153 149 -------GQ-------GEAIAHNL-RTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKS 213 (658)
Q Consensus 149 -------Gq-------~~aiA~~l-~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPEgaAsIl~rd 213 (658)
|+ .+.||-.. .++ ..+|+|++|+|++.|.|||.+-++-++|..+++-+-..|..+.-.+|.+.
T Consensus 1654 ~IiGkeeglGVEnL~GSGlIAGetSrAY--~ei~T~t~VT~RsVGIGAYlvRLgqR~IQve~~~iILTGa~ALNklLGre 1731 (2196)
T KOG0368|consen 1654 AIIGKEEGIGVENLRGSGLIAGETSRAY--NEIFTITLVTGRSVGIGAYLARLGQRIIQVEDQHIILTGASALNKLLGRE 1731 (2196)
T ss_pred EEecccccccceeccccccccchhhhhh--hccceEEEEecceeeHHHHHHHHHHHHHHhcCCceEEeCHHHHHHHhccc
Confidence 00 01222222 222 36999999999999999999988888888888888777777766666553
No 149
>PRK10949 protease 4; Provisional
Probab=96.67 E-value=0.0082 Score=69.99 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhh-cCC-cEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccE
Q 006153 112 GYRKALRMMYYADH-HGF-PIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANK 189 (658)
Q Consensus 112 g~rKa~R~i~lAdk-~~l-PIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ 189 (658)
++....+.++.|.. .++ -||.-+|+||..+... ..|.+.+..+...++|+|+.+-+-|.+||.|+++.||.
T Consensus 348 ~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~as-------e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~ 420 (618)
T PRK10949 348 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS-------EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANY 420 (618)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHH-------HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCE
Confidence 34455555655543 343 6888899999654322 33666777776678999999989999999999999999
Q ss_pred EEEEcCceEEEeC
Q 006153 190 LLMLENAVFYVAS 202 (658)
Q Consensus 190 ViA~p~A~i~Vmg 202 (658)
+||.|.+..+.+|
T Consensus 421 I~a~p~t~tGSIG 433 (618)
T PRK10949 421 IVASPSTLTGSIG 433 (618)
T ss_pred EEECCCCceeeCc
Confidence 9999986654443
No 150
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.29 E-value=0.0086 Score=61.35 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh-hhcCCcEEEE-ecCCCCCC-ChhHHH-hch--------HHHHHHHHHHHhcCCCCEEEE
Q 006153 104 NFGMPTPHGYRKALRMMYYA-DHHGFPIVTF-IDTPGAYA-DLKSEE-LGQ--------GEAIAHNLRTMFGLKVPIISI 171 (658)
Q Consensus 104 ~gGsl~p~g~rKa~R~i~lA-dk~~lPIV~L-iDTpGa~~-g~~aE~-~Gq--------~~aiA~~l~als~a~VPiISV 171 (658)
...+++..........++.- ...+..+|+| .-+||.++ |.+.-+ ..+ ...+-.++..+.++++|+|+.
T Consensus 51 ~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAA 130 (291)
T KOG1679|consen 51 KKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAA 130 (291)
T ss_pred hhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceeh
Confidence 34566655555555555432 2344555555 66888877 333222 211 112233344556799999999
Q ss_pred EcCCCchhhhhhhccccEEEEEcCceEEE-------eCHHHHHHHhhhhccCchHHHH----hhcccHHHHHHcCCceee
Q 006153 172 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKSAKASPKAAE----KLKITGSELCKLQIADGV 240 (658)
Q Consensus 172 ViG~a~GGGAlalg~aD~ViA~p~A~i~V-------mgPEgaAsIl~rd~~~~~eAaE----~~kitA~dL~~~GlVD~I 240 (658)
|-|-+.|||--.+..||+.++..+|.++. ++..|..+-+.|-. ...-+.| ...+...++...|+|+.|
T Consensus 131 idG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~v-g~alaKELIftarvl~g~eA~~lGlVnhv 209 (291)
T KOG1679|consen 131 IDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIV-GVALAKELIFTARVLNGAEAAKLGLVNHV 209 (291)
T ss_pred hcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHH-hHHHHHhHhhhheeccchhHHhcchHHHH
Confidence 99999999988877899999999987765 33333222222211 1111111 124667889999999999
Q ss_pred ecCC
Q 006153 241 IPEP 244 (658)
Q Consensus 241 Ipe~ 244 (658)
+...
T Consensus 210 v~qn 213 (291)
T KOG1679|consen 210 VEQN 213 (291)
T ss_pred HhcC
Confidence 9653
No 151
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=96.18 E-value=0.2 Score=54.91 Aligned_cols=179 Identities=11% Similarity=0.075 Sum_probs=113.3
Q ss_pred eEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhh-hcCCcEEEEecCCC-CCC-Chh----HHH--h---chH
Q 006153 84 RTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYAD-HHGFPIVTFIDTPG-AYA-DLK----SEE--L---GQG 151 (658)
Q Consensus 84 rpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAd-k~~lPIV~LiDTpG-a~~-g~~----aE~--~---Gq~ 151 (658)
..-+|+-|+|. .-.+++-++.++..-++.-.+ ....-+|++-.++| +++ |-+ ++. . +..
T Consensus 47 ~~r~itLNRPK---------aLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~ 117 (401)
T KOG1684|consen 47 CARVITLNRPK---------ALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV 117 (401)
T ss_pred ceeEEEecCch---------hhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence 34456667764 457888899998887776444 34456777766655 444 211 111 1 122
Q ss_pred HHHHH----HHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE------eCHHHHHHHhhhhccCchHHH
Q 006153 152 EAIAH----NLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSAKASPKAA 221 (658)
Q Consensus 152 ~aiA~----~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V------mgPEgaAsIl~rd~~~~~eAa 221 (658)
..++. +...++....|+|+++.|-++|||.....++-|.+|++...|++ .-|.+++++.....-+ ...
T Consensus 118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg--~lg 195 (401)
T KOG1684|consen 118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG--YLG 195 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc--HHH
Confidence 33333 33456678899999999999999998888888888888876654 3466666665443322 222
Q ss_pred Hh-----hcccHHHHHHcCCceeeecCCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006153 222 EK-----LKITGSELCKLQIADGVIPEPLGGAHADPSWTSQQIKIAINESMDELGKMDTQELLKHRNLKFR 287 (658)
Q Consensus 222 E~-----~kitA~dL~~~GlVD~IIpe~~ggah~dp~~tr~~L~~aL~~~L~eL~~l~~~~ll~~R~~k~r 287 (658)
.. .+++..|++..|+..+-||.. .|. .|++.|.....-+|++-++.-.++|-
T Consensus 196 ~YLgLTG~rl~GaD~~~~GlATHyv~S~-------------~l~-~Lee~L~~~l~~dp~~~I~~~l~~y~ 252 (401)
T KOG1684|consen 196 LYLGLTGQRLSGADALRCGLATHYVPSE-------------KLP-SLEERLLKNLNDDPQSVINETLEKYA 252 (401)
T ss_pred HhhhhccceecchHHHHhcchhhccchh-------------hhh-HHHHHHhhhcCCCcHHHHHHHHHHhc
Confidence 33 466789999999999988542 121 24444443344466666777777763
No 152
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=95.96 E-value=0.0085 Score=57.56 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred cCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEE
Q 006153 163 GLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYV 200 (658)
Q Consensus 163 ~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~V 200 (658)
..+.|+++.+-|.|.|||.|+++.||.|+|.|.+.++.
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgs 41 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGS 41 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE-
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEE
Confidence 46899999999999999999999999999999987644
No 153
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=95.19 E-value=0.19 Score=58.52 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhc-CCc-EEEEecCC-CCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhcc
Q 006153 110 PHGYRKALRMMYYADHH-GFP-IVTFIDTP-GAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGC 186 (658)
Q Consensus 110 p~g~rKa~R~i~lAdk~-~lP-IV~LiDTp-Ga~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~ 186 (658)
+.++..+.+.++.|.+. ++. ||.-+|++ |..++ ....++..+..+...+.|+|+..-+. .+||.|.++.
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~-------~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~ 146 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSP-------HLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASF 146 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHH-------HHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhh
Confidence 46788899999877654 454 44447753 43222 22346777888877899999965543 3677777778
Q ss_pred ccEEEEEcCceEEE
Q 006153 187 ANKLLMLENAVFYV 200 (658)
Q Consensus 187 aD~ViA~p~A~i~V 200 (658)
||.|||.|.+.+++
T Consensus 147 AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 147 ADEIILNPMGSVDL 160 (584)
T ss_pred CCEEEECCCceEEe
Confidence 99999999987744
No 154
>PRK10949 protease 4; Provisional
Probab=94.62 E-value=0.52 Score=55.32 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhhc-CC-cEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCc-hhhhhhhcc
Q 006153 110 PHGYRKALRMMYYADHH-GF-PIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGG-SGGALAIGC 186 (658)
Q Consensus 110 p~g~rKa~R~i~lAdk~-~l-PIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~-GGGAlalg~ 186 (658)
+...+.+.+.++.|.+. ++ -||.=+|++|...... .+.+...+..+...+.|+|++ |..+ .|+.|.+..
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~------~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLASa 165 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPS------MQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLASF 165 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHH------HHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhhhh
Confidence 35677888899877654 44 4666688876432222 234667777777789999984 5444 456666677
Q ss_pred ccEEEEEcCceEEE
Q 006153 187 ANKLLMLENAVFYV 200 (658)
Q Consensus 187 aD~ViA~p~A~i~V 200 (658)
||.||+.|.+.+++
T Consensus 166 AD~I~l~P~G~v~~ 179 (618)
T PRK10949 166 ANKIYLSPQGVVDL 179 (618)
T ss_pred CCEEEECCCceEEE
Confidence 99999999987654
No 155
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.99 E-value=14 Score=43.12 Aligned_cols=211 Identities=21% Similarity=0.343 Sum_probs=129.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhh--ccCCCCChhhHHHHHHH
Q 006153 350 VMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQ--GLASAPNYASLKYKLDM 427 (658)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Lk~ki~~ 427 (658)
.+...|..=++.|-.+-..--.|.+++..+|..+..-+..=-+--|.|..+++.+-..|++ .|...++|..=+.-+..
T Consensus 119 ~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~ 198 (560)
T PF06160_consen 119 EILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEK 198 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333333333445555555567899999999999888777777778999999999999986 68899999988888888
Q ss_pred hhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 006153 428 LKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELID 507 (658)
Q Consensus 428 ~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~ 507 (658)
+++..... .+.=+.|-.|=.++...|+.-+. .|++-+..+.. .....-|..+-+.|..+.+.++..+..
T Consensus 199 l~~~~~~l--~~~~e~IP~l~~~l~~~~P~ql~--eL~~gy~~m~~-------~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 199 LKEETDEL--EEIMEDIPKLYKELQKEFPDQLE--ELKEGYREMEE-------EGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred HHHHHHHH--HHHHHHhHHHHHHHHHHhHHHHH--HHHHHHHHHHH-------CCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 87655321 22223344566777777774432 33344444433 456666778888888888876643332
Q ss_pred HHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHH
Q 006153 508 GLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQA 587 (658)
Q Consensus 508 ~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~ 587 (658)
+..| +++ .+++.+++|..+|+.+ ++.|.-|+. .+.-|++
T Consensus 268 -L~~l--~l~--------------------~~~~~~~~i~~~Id~l---------Yd~le~E~~---------Ak~~V~~ 306 (560)
T PF06160_consen 268 -LKNL--ELD--------------------EVEEENEEIEERIDQL---------YDILEKEVE---------AKKYVEK 306 (560)
T ss_pred -HHcC--CHH--------------------HHHHHHHHHHHHHHHH---------HHHHHHHHH---------HHHHHHH
Confidence 2222 333 4555666666666633 555555554 2444555
Q ss_pred HHHHHHHHHHHHcCChh-hHHHHHHH
Q 006153 588 LEQQIKQRLSEAVNSSE-LKEKHEEL 612 (658)
Q Consensus 588 l~~~I~~~i~~a~~ss~-lk~k~E~L 612 (658)
....|...|..+-+... |...++.|
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444333 44433333
No 156
>PRK01156 chromosome segregation protein; Provisional
Probab=93.48 E-value=11 Score=45.94 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHH
Q 006153 321 KLEDEVEKLKQQILK 335 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (658)
+++.+++.++++|.+
T Consensus 194 ~~e~eL~~~~~~i~e 208 (895)
T PRK01156 194 SSNLELENIKKQIAD 208 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 157
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.03 E-value=0.58 Score=46.30 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 006153 489 DLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 568 (658)
Q Consensus 489 ~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~ 568 (658)
-|+-.|++++.+++.++...-.++.+++..-+++.++... ....|+..++..|..+|. +++..||.+|.
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~-----~~~~ki~e~~~ki~~ei~------~lr~~iE~~K~ 152 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQA-----KQELKIQELNNKIDTEIA------NLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3677777777777777777777777777777777776655 233455555555555543 47888888888
Q ss_pred HHHhh
Q 006153 569 EIAKA 573 (658)
Q Consensus 569 Ev~~a 573 (658)
++-+.
T Consensus 153 ~~lr~ 157 (177)
T PF07798_consen 153 DTLRW 157 (177)
T ss_pred HHHHH
Confidence 77653
No 158
>PRK03918 chromosome segregation protein; Provisional
Probab=92.69 E-value=13 Score=44.86 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHhccCCCCCCCCChH
Q 006153 372 MQEKFATLRAEFSKGNSRDQLMDPI 396 (658)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (658)
|++.+..|+..+..-+.-.+++.+.
T Consensus 424 L~~~l~~L~~~~~~Cp~c~~~L~~~ 448 (880)
T PRK03918 424 LKKAIEELKKAKGKCPVCGRELTEE 448 (880)
T ss_pred HHHHHHHHHhcCCCCCCCCCcCCch
Confidence 4445555544433334444444443
No 159
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.27 E-value=24 Score=41.14 Aligned_cols=94 Identities=15% Similarity=0.291 Sum_probs=61.3
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHc---------CcHHHHHHHHHHhccCCC
Q 006153 318 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAM---------GMQEKFATLRAEFSKGNS 388 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 388 (658)
.-..|+..+..+..+...-.+-...---..-.+.+.+|+.++++ +...+..+ -|.+.|..|+....+...
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~-l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAA-LEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678888888888777766655544445556777777766653 22222222 367788888888888755
Q ss_pred CCC-CCChHHHHHHHHHHHHHhhcc
Q 006153 389 RDQ-LMDPILMDKITELKNEFNQGL 412 (658)
Q Consensus 389 ~~~-~~~~~~~~~~~~~~~~~~~~~ 412 (658)
++- +-|-.+-..|+.|++...+.+
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHH
Confidence 544 444458888888888877755
No 160
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.38 E-value=42 Score=39.22 Aligned_cols=134 Identities=16% Similarity=0.234 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhh--ccCCCCChhhHHHHHHHhhhhccccccc
Q 006153 361 HEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQ--GLASAPNYASLKYKLDMLKEFSNAKSLL 438 (658)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Lk~ki~~~ke~s~~~~~~ 438 (658)
.|-.+-..--.|.+++..+|..+.--+..=-+--|.|-.+++.+-.+|.+ .|..+++|..=+.-+..+++..... .
T Consensus 134 ~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l--~ 211 (569)
T PRK04778 134 SEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAAL--E 211 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH--H
Confidence 34344444456889999999999887777777788899999999999986 6999999999888888888665422 1
Q ss_pred hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 006153 439 DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESEL 505 (658)
Q Consensus 439 ~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l 505 (658)
..=+.|=+|=.++...|+.-++ +|++-+..|+. .....=|..+-..|..+++.+...+
T Consensus 212 ~~~~~iP~l~~~~~~~~P~ql~--el~~gy~~m~~-------~gy~~~~~~i~~~i~~l~~~i~~~~ 269 (569)
T PRK04778 212 QIMEEIPELLKELQTELPDQLQ--ELKAGYRELVE-------EGYHLDHLDIEKEIQDLKEQIDENL 269 (569)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHH-------cCCCCCCCChHHHHHHHHHHHHHHH
Confidence 1222333455666666654332 34444444443 2333333456666666666655444
No 161
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.94 E-value=20 Score=41.92 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHH
Q 006153 603 SELKEKHEELMAEI 616 (658)
Q Consensus 603 s~lk~k~E~Lk~e~ 616 (658)
-+|++-|+.|...+
T Consensus 441 QeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 441 QELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666677776665
No 162
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.61 E-value=5.7 Score=43.96 Aligned_cols=112 Identities=26% Similarity=0.392 Sum_probs=79.1
Q ss_pred HHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCcchhHhhhh
Q 006153 446 KLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG---LESLGLDVEVVKSK 522 (658)
Q Consensus 446 ~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~---~~sl~~~~~~~~~~ 522 (658)
+++..|..-+ ++.+-.|..|..+|+++ .|||..--+=+|..|..- |.++.-++.-++.+
T Consensus 227 ~~~~~I~~~~------~~~~~~L~kl~~~i~~~------------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 227 QHKKSIESAL------PETKSQLDKLQQDISKT------------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHHHhh------hHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555565555 47788888899999988 788887777777776665 77766666666655
Q ss_pred hHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCC-----CCChhhHHHHHHHHHHHHH
Q 006153 523 AKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGK-----KPDVKSKCKIQALEQQIKQ 594 (658)
Q Consensus 523 ~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~-----~p~~~~k~kie~l~~~I~~ 594 (658)
.+.+++ -+.++.++++ +|.+.+|..|.|+..-|. +|-...|+=|..|+++|++
T Consensus 289 y~~~s~---------~V~~~t~~L~----------~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 289 YKQASE---------GVSERTRELA----------EISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHhh---------HHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 555555 3333444333 477888899999988777 6667778888888888876
No 163
>PRK01156 chromosome segregation protein; Provisional
Probab=89.14 E-value=18 Score=44.04 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q 006153 605 LKEKHEELM 613 (658)
Q Consensus 605 lk~k~E~Lk 613 (658)
++..+++|+
T Consensus 435 l~~~~~el~ 443 (895)
T PRK01156 435 LRENLDELS 443 (895)
T ss_pred HHHHHHHHH
Confidence 444444444
No 164
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.05 E-value=72 Score=40.40 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHhhhcCC--CCCchHHH---HHHHHHHHHhhHHHHHHHH---HcCcHHHHHHHHHHhcc
Q 006153 320 EKLEDEVEKLKQQILKAKESST--KPPDAALN---VMIQKLKKEVDHEFSEAAK---AMGMQEKFATLRAEFSK 385 (658)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 385 (658)
..+..+++-|++||......+- ++....|+ +-|+.+++|++.=--+|++ --+|+..+..+..|..+
T Consensus 830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q 903 (1293)
T KOG0996|consen 830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQ 903 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhH
Confidence 3455578888899887665522 23333333 4466666666543333333 22344444444444333
No 165
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.05 E-value=19 Score=44.30 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHH
Q 006153 321 KLEDEVEKLKQQILK 335 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (658)
++..+++.|..++..
T Consensus 678 ~l~~~l~~l~~~l~~ 692 (1164)
T TIGR02169 678 RLRERLEGLKRELSS 692 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555444433
No 166
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.65 E-value=15 Score=47.07 Aligned_cols=126 Identities=8% Similarity=0.082 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhccCCCC-ChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 006153 398 MDKITELKNEFNQGLASAP-NYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 476 (658)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~-~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 476 (658)
.+.+..+.+.|.+.+.... ....+..++..++... ..+.+....|..++.+--.++-.-.....++..+-.+++
T Consensus 300 ~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el-----~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~ 374 (1311)
T TIGR00606 300 DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER-----RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA 374 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677776543322 3444555555555333 333444444555555444444444555566666666666
Q ss_pred hcCCCC---CCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhh
Q 006153 477 DSGASS---FSDLEDD----LKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSE 528 (658)
Q Consensus 477 k~~~s~---~~~l~~~----Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~ 528 (658)
.--+-+ ..++++. +..+|.+.-...+..+.....++..++..+..++-.+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~ 433 (1311)
T TIGR00606 375 TRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRD 433 (1311)
T ss_pred HhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 542211 2224433 566666666666666666655555555555544444333
No 167
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.53 E-value=32 Score=43.58 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=17.8
Q ss_pred ChhhhHHHHHHHHHHHHHhhhc
Q 006153 318 SKEKLEDEVEKLKQQILKAKES 339 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ 339 (658)
--.+|+.++++|+.|.-.|..-
T Consensus 194 ~~~el~~~l~~L~~q~~~a~~y 215 (1163)
T COG1196 194 LLEELEKQLEKLERQAEKAERY 215 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999998888754
No 168
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.28 E-value=31 Score=36.50 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh-hcCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 006153 438 LDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ-DSGASSFSDLEDDLKEKLVETKKEIESELI 506 (658)
Q Consensus 438 ~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~-k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~ 506 (658)
.++...+..|+.||+..-. .-.+.+..|+..+. .....-.+.-.++|-..+..++.+|+..+.
T Consensus 120 ~~le~~i~~L~eEl~fl~~------~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~ 183 (312)
T PF00038_consen 120 VDLENQIQSLKEELEFLKQ------NHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQ 183 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh------hhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHh
Confidence 4466677778877764322 23344555555553 111111334456777777778888775443
No 169
>PRK03918 chromosome segregation protein; Provisional
Probab=88.14 E-value=49 Score=40.05 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q 006153 464 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKL 494 (658)
Q Consensus 464 lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki 494 (658)
|++.++.|+.....- -.-.++|+++-+..|
T Consensus 424 L~~~l~~L~~~~~~C-p~c~~~L~~~~~~el 453 (880)
T PRK03918 424 LKKAIEELKKAKGKC-PVCGRELTEEHRKEL 453 (880)
T ss_pred HHHHHHHHHhcCCCC-CCCCCcCCchhHHHH
Confidence 666666666422222 124778888766655
No 170
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.05 E-value=82 Score=40.55 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=70.5
Q ss_pred HHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhc----CcchHHHHHHHHHHHhhcCCCC
Q 006153 407 EFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVIC----RPDIKEKMEAIKAKLQDSGASS 482 (658)
Q Consensus 407 ~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~----~~~lkek~~~lk~E~~k~~~s~ 482 (658)
..++.|..+-.+..+.-+++++++. +...+..+.++.......|.+.+. .+.|.+.|..++.++...
T Consensus 519 ~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~---- 589 (1311)
T TIGR00606 519 KLDQEMEQLNHHTTTRTQMEMLTKD-----KMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQT---- 589 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH----
Confidence 3445555555666666666666532 233455566666666666766552 256677777777777655
Q ss_pred CCCCChHHHHHHHHHH---HHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHh
Q 006153 483 FSDLEDDLKEKLVETK---KEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDV 553 (658)
Q Consensus 483 ~~~l~~~Lkeki~k~k---~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~ 553 (658)
.+++..+. .+.+..+..+...+.-.-..+.+....+.+.....++..-++.++.++.+..+++
T Consensus 590 --------~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~ 655 (1311)
T TIGR00606 590 --------RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQR 655 (1311)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 22333222 3344444444333333333333333344443345566677777777777666554
No 171
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.75 E-value=41 Score=39.82 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=13.1
Q ss_pred CCCchHHHHHHHHHHHHhhHHH
Q 006153 342 KPPDAALNVMIQKLKKEVDHEF 363 (658)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~ 363 (658)
..|-.-+...+++++.-++.|.
T Consensus 292 ~~p~~l~~~ll~~~~~q~~~e~ 313 (650)
T TIGR03185 292 PLPLLLIPNLLDSTKAQLQKEE 313 (650)
T ss_pred cCCHhhhHHHHHHHHHHHHHHH
Confidence 3455555566666666666654
No 172
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.00 E-value=26 Score=43.37 Aligned_cols=89 Identities=25% Similarity=0.418 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 006153 397 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 476 (658)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 476 (658)
++.||..|..|..... -|...|++.|++++ ..+++|.||+..=|+++=.+=--.+++.++++--.
T Consensus 182 le~kir~LrqElEEK~---enll~lr~eLddle------------ae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae 246 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKF---ENLLRLRNELDDLE------------AEISKLRQEIEEFLDEAHRADRYRDELDALREQAE 246 (1195)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh
Confidence 4556666666655543 56778888888876 23778999999999988877778888888887444
Q ss_pred hcCCCCCCCCChH--HHHHHHHHHHH
Q 006153 477 DSGASSFSDLEDD--LKEKLVETKKE 500 (658)
Q Consensus 477 k~~~s~~~~l~~~--Lkeki~k~k~E 500 (658)
..+..--.-+.+. +|+.++.+++.
T Consensus 247 r~d~~ykerlmDs~fykdRveelked 272 (1195)
T KOG4643|consen 247 RPDTTYKERLMDSDFYKDRVEELKED 272 (1195)
T ss_pred cCCCccchhhhhhHHHHHHHHHHHhh
Confidence 4432223334444 78888888765
No 173
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.55 E-value=16 Score=36.28 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006153 534 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELM 613 (658)
Q Consensus 534 ~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk 613 (658)
.++..++.|+++++..|..+ +.++|--+..-|.++.--- .....||..++..|..+|. +|+..||.+|
T Consensus 84 ~L~~eie~l~~~L~~ei~~l--~a~~klD~n~eK~~~r~e~----~~~~~ki~e~~~ki~~ei~------~lr~~iE~~K 151 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKL--RAEVKLDLNLEKGRIREEQ----AKQELKIQELNNKIDTEIA------NLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 34556777777777777765 3466666666666664211 1346678888877777764 4899999999
Q ss_pred HHHhh
Q 006153 614 AEISD 618 (658)
Q Consensus 614 ~e~a~ 618 (658)
.++-+
T Consensus 152 ~~~lr 156 (177)
T PF07798_consen 152 WDTLR 156 (177)
T ss_pred HHHHH
Confidence 88754
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.43 E-value=25 Score=38.23 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=88.5
Q ss_pred HHHHHHHhhhhccccccchh----HHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHH
Q 006153 421 LKYKLDMLKEFSNAKSLLDS----KNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVE 496 (658)
Q Consensus 421 Lk~ki~~~ke~s~~~~~~~~----~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k 496 (658)
+.+|+...|..++..+..+= .++++-||..++..+. ++++=.+.|...+... +.+-|.|+++-..
T Consensus 115 m~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~------~l~~D~~~L~~~~~~l-----~~~~~~l~~~~~~ 183 (312)
T smart00787 115 MDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE------GLKEDYKLLMKELELL-----NSIKPKLRDRKDA 183 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45677777877776644432 2355667777776665 5555555555555544 4677788888888
Q ss_pred HHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCC
Q 006153 497 TKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKK 576 (658)
Q Consensus 497 ~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~ 576 (658)
++.|+++.-..+-.-=..+-+- ...+++++..+..+|..+...+ .+++..+..|+..|.
T Consensus 184 L~~e~~~L~~~~~e~~~~d~~e-------------L~~lk~~l~~~~~ei~~~~~~l---~e~~~~l~~l~~~I~----- 242 (312)
T smart00787 184 LEEELRQLKQLEDELEDCDPTE-------------LDRAKEKLKKLLQEIMIKVKKL---EELEEELQELESKIE----- 242 (312)
T ss_pred HHHHHHHHHHhHHHHHhCCHHH-------------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-----
Confidence 8888765332221111111111 1234456666666666665554 456666666666655
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH------cC---ChhhHHHHHHHHHHH
Q 006153 577 PDVKSKCKIQALEQQIKQRLSEA------VN---SSELKEKHEELMAEI 616 (658)
Q Consensus 577 p~~~~k~kie~l~~~I~~~i~~a------~~---ss~lk~k~E~Lk~e~ 616 (658)
+..+++.+++.+|++- +.. .+ .+.||.++..|..--
T Consensus 243 ---~~~~~k~e~~~~I~~a-e~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 243 ---DLTNKKSELNTEIAEA-EKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred ---HHHHHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3355666666666542 221 22 233677777666543
No 175
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=83.75 E-value=3.5 Score=40.55 Aligned_cols=90 Identities=23% Similarity=0.398 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHH---HhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 006153 441 KNKAAKLKQEINK---KFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 517 (658)
Q Consensus 441 ~~~~~~Lk~Ei~~---~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~ 517 (658)
+....+|+.+|+. ++++++. .++.|++...+++.++ ||++.+++.++...|...+-... -.++
T Consensus 44 ~~~~~~l~eeik~~n~~~~e~l~--~~~~kl~et~~~L~k~--------~Pev~~qa~~l~e~lQ~~vq~l~----~E~q 109 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEAEEALK--QLKTKLEETAEKLRKA--------NPEVEKQANELQEKLQSAVQSLV----QESQ 109 (155)
T ss_dssp HHHHHHHHHHHTT-SSTHHHHHH--HHHHHHHHHHHGGGG---------SHHHHHT-SSSHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcChhHHHHHH--HHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3445567777777 7777774 5778888888888875 89999999999888876554442 2222
Q ss_pred HhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 006153 518 VVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 556 (658)
Q Consensus 518 ~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~ 556 (658)
.+- +.+++ .+...+++|...|+.++++
T Consensus 110 k~~---k~v~~---------~~~~~~e~l~~~~K~~~D~ 136 (155)
T PF07464_consen 110 KLA---KEVSE---------NSEGANEKLQPAIKQAYDD 136 (155)
T ss_dssp HHH---HHHHS------------SS-GGGHHHHHHHHHH
T ss_pred HHH---HHHHH---------HHHhhhHHHHHHHHHHHHH
Confidence 222 33333 3444566666666666554
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.25 E-value=66 Score=34.91 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=35.5
Q ss_pred hHHHHHHHhhhhccccccchhH----HHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 006153 420 SLKYKLDMLKEFSNAKSLLDSK----NKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLV 495 (658)
Q Consensus 420 ~Lk~ki~~~ke~s~~~~~~~~~----~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~ 495 (658)
.+++|+.-.|..++..+..+== ++++.|+..+...+. +|+.-...|..-.... +.+-|.|.++-.
T Consensus 119 ~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~------~L~~D~~~L~~~~~~l-----~~~~~~l~~~~~ 187 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLE------LLQEDYAKLDKQLEQL-----DELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3557777777777665443322 244455555555544 4444444444433332 233344444444
Q ss_pred HHHHHHH
Q 006153 496 ETKKEIE 502 (658)
Q Consensus 496 k~k~E~~ 502 (658)
.++.|+.
T Consensus 188 ~L~~e~~ 194 (325)
T PF08317_consen 188 ELEEELE 194 (325)
T ss_pred HHHHHHH
Confidence 4444433
No 177
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=82.00 E-value=25 Score=40.76 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHH-----HHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHH--
Q 006153 396 ILMDKITELKNEFNQGLASAPNYASLKYK-----LDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKM-- 468 (658)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~Lk~k-----i~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~-- 468 (658)
.+..+++.|..-|+-+|++.+--..|-+| ++-++|.+.+...+- +.-...| .+++-+|..+=-++.++|+.
T Consensus 305 ~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv-~~l~~~l-kDLd~~~~aLs~rld~qEqtL~ 382 (531)
T PF15450_consen 305 LEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSV-AELMRQL-KDLDDHILALSWRLDLQEQTLN 382 (531)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhhhHHHHHHH
Confidence 45677888888888888876554444333 233444443322211 1111122 34444555444455555543
Q ss_pred ---HHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHH
Q 006153 469 ---EAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEE 545 (658)
Q Consensus 469 ---~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~e 545 (658)
..++.|+..+ .....++|....+|++ ..++.+.-+|+-|++-...+++ |....+.+
T Consensus 383 ~rL~e~~~e~~~~--------~r~~lekl~~~q~e~~----~~l~~v~eKVd~LpqqI~~vs~---------Kc~~~Ksd 441 (531)
T PF15450_consen 383 LRLSEAKNEWESD--------ERKSLEKLDQWQNEME----KHLKEVQEKVDSLPQQIEEVSD---------KCDLHKSD 441 (531)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHH---------HHHHHHhh
Confidence 3344444433 5667788888888855 3455556666666655566666 78888888
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHh
Q 006153 546 INKKIEDVINSSDLKDMIELLKLEIAK 572 (658)
Q Consensus 546 i~kki~~~~~~~~ik~kiE~LK~Ev~~ 572 (658)
.|.+|....+. .-..|.+++.|++.
T Consensus 442 ~d~kIdtE~k~--R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 442 SDTKIDTEGKA--REREVGAVRQELAT 466 (531)
T ss_pred hhhhccHHHHH--HHHHHHHHHHHHHH
Confidence 88888755432 33456777777775
No 178
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.68 E-value=18 Score=45.33 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhh-----ccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHH
Q 006153 395 PILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEF-----SNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKME 469 (658)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~-----s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~ 469 (658)
|.|.-.++++--+...- ++..+-|+.+|..+... .....+.++.+.|+.|++|++.==.++.+ +++.+
T Consensus 816 ~~l~~~l~~~~~~~k~~---~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K----k~~i~ 888 (1293)
T KOG0996|consen 816 PELENRLEKLTASVKRL---AELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK----KARIK 888 (1293)
T ss_pred HHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHH
Confidence 44555555555554432 33667778877766544 33444455666678888887754443333 35555
Q ss_pred HHHHHHhhc
Q 006153 470 AIKAKLQDS 478 (658)
Q Consensus 470 ~lk~E~~k~ 478 (658)
.|+..+-..
T Consensus 889 ~lq~~i~~i 897 (1293)
T KOG0996|consen 889 ELQNKIDEI 897 (1293)
T ss_pred HHHHHHHHh
Confidence 555555443
No 179
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.26 E-value=44 Score=42.34 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 006153 398 MDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQE 450 (658)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~E 450 (658)
...+++|+.+-++ |-.|..|+.++..+............+..++.+..+
T Consensus 199 ~~~l~~L~~q~~~----a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (1163)
T COG1196 199 EKQLEKLERQAEK----AERYQELKAELRELELALLLAKLKELRKELEELEEE 247 (1163)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554443 345777777777766555444444444433333333
No 180
>PLN02939 transferase, transferring glycosyl groups
Probab=80.06 E-value=22 Score=44.11 Aligned_cols=99 Identities=24% Similarity=0.286 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhhcCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHH--HhhcCcchhHhhhhhHHhhhccccchhh
Q 006153 464 IKEKMEAIKAKLQDSGASS-----FSDLEDDLKEKLVETKKEIESELIDG--LESLGLDVEVVKSKAKELSEQTSFSNFR 536 (658)
Q Consensus 464 lkek~~~lk~E~~k~~~s~-----~~~l~~~Lkeki~k~k~E~~~~l~~~--~~sl~~~~~~~~~~~k~~~~~~~~~~~~ 536 (658)
+-||.|.|..=+.++.+-- --+=|++|.+||++++.- |.++ |+---..++.+..|+|.+-+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 365 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEAS----LKEANVSKFSSYKVELLQQKLKLLEE-------- 365 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----HHHhhHhhhhHHHHHHHHHHHHHHHH--------
Confidence 5566666655444442211 123467788888877654 4344 55555566777667776666
Q ss_pred hhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHhhCC
Q 006153 537 SKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIAKAGK 575 (658)
Q Consensus 537 ~k~~~l~~ei~kki~~~~~~~~-ik~kiE~LK~Ev~~ag~ 575 (658)
....-.+||+..++--+.+-+ +..++..||.|-.+...
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (977)
T PLN02939 366 -RLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404 (977)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 455556666666665555443 77777778887766443
No 181
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=79.92 E-value=12 Score=43.54 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHh
Q 006153 445 AKLKQEINKKFEEV 458 (658)
Q Consensus 445 ~~Lk~Ei~~~~~ea 458 (658)
-||.+|||+=|+.+
T Consensus 4 RKLq~eIdr~lkKv 17 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKV 17 (575)
T ss_pred hHHHHHHHHHHHHh
Confidence 36999999887743
No 182
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.34 E-value=1.2e+02 Score=34.60 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 006153 321 KLEDEVEKLKQQILK 335 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (658)
+++.++..|..+|-.
T Consensus 178 e~~~~i~~l~~~i~~ 192 (562)
T PHA02562 178 ELNQQIQTLDMKIDH 192 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555444443
No 183
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.01 E-value=32 Score=40.21 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 006153 463 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETK 498 (658)
Q Consensus 463 ~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k 498 (658)
+|..-|.-+|+++..-..-.-.+|-+-.+.||.+++
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444455555665555444445566666666666555
No 184
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.93 E-value=33 Score=42.23 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=32.2
Q ss_pred hhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 006153 418 YASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 476 (658)
Q Consensus 418 ~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 476 (658)
+.+.|-++.-+.||-+.+ -..+.-|++||...=.|+-.+...++++.-.=++++
T Consensus 257 lekmkiqleqlqEfkSki-----m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 257 LEKMKIQLEQLQEFKSKI-----MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655433 333455777777777777777777776655554444
No 185
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.83 E-value=75 Score=37.16 Aligned_cols=109 Identities=10% Similarity=0.181 Sum_probs=57.9
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHH----HHHcCcHHHHHHHHHHhccCCCCCCCC
Q 006153 318 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEA----AKAMGMQEKFATLRAEFSKGNSRDQLM 393 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (658)
+..++..++..+++++-.+...=....-....+.++.+..+||+=|.-. -.---....+..+..-+..+..+
T Consensus 246 ~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~---- 321 (560)
T PF06160_consen 246 EHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQ---- 321 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----
Confidence 5567788888888888777654322222223334444555555444211 11112233344444444444332
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhh
Q 006153 394 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKE 430 (658)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke 430 (658)
+-.|...++.+.+.|.-.=.....+..|..+|..+..
T Consensus 322 ~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~ 358 (560)
T PF06160_consen 322 NKELKEELERVSQSYTLNHNELEIVRELEKQLKELEK 358 (560)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 2356777777777775444455666777777666553
No 186
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.23 E-value=1.5e+02 Score=35.10 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006153 260 KIAINESMDELGKMDTQELLKHRNLKF 286 (658)
Q Consensus 260 ~~aL~~~L~eL~~l~~~~ll~~R~~k~ 286 (658)
...|..++..|..++.=+.+......|
T Consensus 168 ~~~l~~Ai~~LlGl~~~~~L~~dl~~~ 194 (650)
T TIGR03185 168 ASLLKEAIEVLLGLDLIDRLAGDLTNV 194 (650)
T ss_pred hHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 335667777787877655444444444
No 187
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.95 E-value=65 Score=42.62 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=85.0
Q ss_pred CCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCCh---HHHHHHHHHHHHHhhccCCCCCh
Q 006153 342 KPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDP---ILMDKITELKNEFNQGLASAPNY 418 (658)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 418 (658)
.+...+|...|.-|.+|-+- +..++..++.|-..-+.+.-+++. -|.+.++....+|+.-......+
T Consensus 1145 ~~g~sdL~~iv~~LR~Ekei----------~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~ 1214 (1822)
T KOG4674|consen 1145 LLGLSDLQNIVSFLRKEKEI----------AETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEH 1214 (1822)
T ss_pred ccchHHHHHHHHHHHhHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 33455677777777777542 344566666665555444333333 34556666666777667777777
Q ss_pred hhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 006153 419 ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETK 498 (658)
Q Consensus 419 ~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k 498 (658)
..+-.++..++ .+.+.|.+ |..|.+..+.-. -.|.+++..|+.++. ..+.-.-.|+.+|...+
T Consensus 1215 ~~i~~~v~~vN------ll~EsN~~---LRee~~~~~~k~---qEl~~~i~kl~~el~-----plq~~l~el~~e~~~~~ 1277 (1822)
T KOG4674|consen 1215 KEILEKVEEVN------LLRESNKV---LREENEANLEKI---QELRDKIEKLNFELA-----PLQNELKELKAELQEKV 1277 (1822)
T ss_pred hHHHHHHHHHH------HHHHhHHH---HHHHHHHHHHHH---HHHHHHHHHHHhhHh-----hHHHHHHHHHHHHHHHH
Confidence 77766666655 22344444 555555544422 455666666666554 22333333444443332
Q ss_pred HHHHHHHHHHHhhcCcchhHhhhhhHHhhhc
Q 006153 499 KEIESELIDGLESLGLDVEVVKSKAKELSEQ 529 (658)
Q Consensus 499 ~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~ 529 (658)
.| ++.|...++-++-|...|.++
T Consensus 1278 ae--------l~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1278 AE--------LKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 556666777777666666665
No 188
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=77.56 E-value=53 Score=40.03 Aligned_cols=134 Identities=24% Similarity=0.358 Sum_probs=87.3
Q ss_pred HHHHHHHHhHHh-hcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHH-------------HHHHHHHH---H
Q 006153 447 LKQEINKKFEEV-ICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKE-------------IESELIDG---L 509 (658)
Q Consensus 447 Lk~Ei~~~~~ea-~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E-------------~~~~l~~~---~ 509 (658)
+++|+.++-..| |+.-.|+++.+..++|.+.- -.+--.+-+.|+.+|.- ...+|++| +
T Consensus 352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL-----~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekl 426 (1265)
T KOG0976|consen 352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSL-----LELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKL 426 (1265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 456666666655 45667889999888888754 11122233333333321 22347788 5
Q ss_pred hhcCcchhHhh---hhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHH----HHHHHHHHhhCCCCChhhH
Q 006153 510 ESLGLDVEVVK---SKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMI----ELLKLEIAKAGKKPDVKSK 582 (658)
Q Consensus 510 ~sl~~~~~~~~---~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~ki----E~LK~Ev~~ag~~p~~~~k 582 (658)
--||-.+.|+- |..|.|.+... +-....-+--.|.-..|...|++|+=+.|| |.||+|..+ -+
T Consensus 427 d~mgthl~mad~Q~s~fk~Lke~ae--gsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~r--------qa 496 (1265)
T KOG0976|consen 427 DLMGTHLSMADYQLSNFKVLKEHAE--GSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENER--------QA 496 (1265)
T ss_pred HHHhHHHHHHHHHHhhHHHHHHhhh--hhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHH--------HH
Confidence 55677777777 78888877533 334444444556667899999999987777 568887653 37
Q ss_pred HHHHHHHHHHHHH
Q 006153 583 CKIQALEQQIKQR 595 (658)
Q Consensus 583 ~kie~l~~~I~~~ 595 (658)
.||+.++++|++.
T Consensus 497 kkiefmkEeiQet 509 (1265)
T KOG0976|consen 497 KKIEFMKEEIQET 509 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988764
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=77.18 E-value=1.8e+02 Score=35.40 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=3.8
Q ss_pred CCEEEEEc
Q 006153 166 VPIISIVI 173 (658)
Q Consensus 166 VPiISVVi 173 (658)
-+.|.+.+
T Consensus 67 ~~~v~~~f 74 (880)
T PRK02224 67 EAEIELWF 74 (880)
T ss_pred cEEEEEEE
Confidence 34555544
No 190
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=76.08 E-value=2.4e+02 Score=36.20 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=17.6
Q ss_pred CCCCceEEEEEEECCeEEEEEeeec
Q 006153 69 YDDPAIVTGIGSMDGRTYMFMGHQK 93 (658)
Q Consensus 69 ~dD~aVVtG~GrI~GrpV~VIa~d~ 93 (658)
+...-+|-=+.|-+|..|+||++..
T Consensus 65 ~~nSyIIYEY~R~~G~~~~vvl~~~ 89 (1201)
T PF12128_consen 65 YSNSYIIYEYQREDGQLCCVVLSRK 89 (1201)
T ss_pred CCCceEEEeeeccCCceeEEEEeec
Confidence 3345577777888888888887744
No 191
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=75.99 E-value=82 Score=36.60 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhccCCCCCCCC
Q 006153 584 KIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLDG 628 (658)
Q Consensus 584 kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~~~~~~~~~ 628 (658)
=|..|.....+. -+.....|.+.|..+..++-++..-|.+..|
T Consensus 452 ~l~~l~~~a~~~--Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g 494 (582)
T PF09731_consen 452 ALSSLPPEAAQR--GVPSEAQLRNRFERVAPEVRRASLVPPEGAG 494 (582)
T ss_pred HHHhcCHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 344444443332 3566667999999999999999888665555
No 192
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=75.93 E-value=1.6e+02 Score=37.60 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=16.5
Q ss_pred ChhhhHHHHHHHHHHHHHhhhc
Q 006153 318 SKEKLEDEVEKLKQQILKAKES 339 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ 339 (658)
...+|+.+++.+..+|..+...
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~ 622 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEER 622 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888777644
No 193
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.27 E-value=1.6e+02 Score=37.60 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCh
Q 006153 580 KSKCKIQALEQQIKQRLSEAVNSS 603 (658)
Q Consensus 580 ~~k~kie~l~~~I~~~i~~a~~ss 603 (658)
...+|+|.|.++-++-+..+..--
T Consensus 1686 ~ar~rAe~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666666666555554433
No 194
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.26 E-value=42 Score=34.70 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHH---------HHHH-Hhhc-CcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 006153 488 DDLKEKLVETKKEIESE---------LIDG-LESL-GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 556 (658)
Q Consensus 488 ~~Lkeki~k~k~E~~~~---------l~~~-~~sl-~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~ 556 (658)
..|-+++...+.|++++ ++.| |.+| ..++.|++ -+..++-|- -.......++.||+.+|...
T Consensus 36 ~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlK--tqrv~e~nl--re~e~~~q~k~Eiersi~~a--- 108 (222)
T KOG3215|consen 36 EHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLK--TQRVIEMNL--REIENLVQKKLEIERSIQKA--- 108 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---
Confidence 34455555555555442 2223 3333 34555665 333444321 22234566788999999865
Q ss_pred chhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcC----ChhhHHHHHHHHHHH
Q 006153 557 SDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVN----SSELKEKHEELMAEI 616 (658)
Q Consensus 557 ~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~----ss~lk~k~E~Lk~e~ 616 (658)
+++||.||-+++ ..||..+++|=-..|..++. -|+---.+..|+.|+
T Consensus 109 ---~~kie~lkkql~----------eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~kel 159 (222)
T KOG3215|consen 109 ---RNKIELLKKQLH----------EAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKEL 159 (222)
T ss_pred ---HHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 889999999998 66777777765555544443 333333444455444
No 195
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.25 E-value=42 Score=37.30 Aligned_cols=160 Identities=24% Similarity=0.352 Sum_probs=102.0
Q ss_pred cCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCC
Q 006153 309 KEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNS 388 (658)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (658)
....+..++...+..-|||..-.|+-..-.+..+--...+.+|.. ++..|..-+.+ .+-.|.+|..+++++
T Consensus 183 ~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~-~~~~I~~~~~~------~~~~L~kl~~~i~~~-- 253 (359)
T PF10498_consen 183 PEEIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQ-HKKSIESALPE------TKSQLDKLQQDISKT-- 253 (359)
T ss_pred hhhcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHH-HHHHHHHhhhH------HHHHHHHHHHHHHHH--
Confidence 344555667888999999998888743333333445556666643 34444443333 355678888888875
Q ss_pred CCCCCChHHHHHHHHHHHHHhhccCC-CCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHH
Q 006153 389 RDQLMDPILMDKITELKNEFNQGLAS-APNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEK 467 (658)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek 467 (658)
.+||..-..-+|++|.. --+|..++.++..+++..+. .+.-+..+-+|+++ |.+.
T Consensus 254 ---------lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~-----~s~~V~~~t~~L~~----------Isee 309 (359)
T PF10498_consen 254 ---------LEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ-----ASEGVSERTRELAE----------ISEE 309 (359)
T ss_pred ---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHH----------HHHH
Confidence 45666655566665542 23477777777777655533 23444445555543 8899
Q ss_pred HHHHHHHHhhcCCCCCCCCCh--HHHHHHHHHHHHHH
Q 006153 468 MEAIKAKLQDSGASSFSDLED--DLKEKLVETKKEIE 502 (658)
Q Consensus 468 ~~~lk~E~~k~~~s~~~~l~~--~Lkeki~k~k~E~~ 502 (658)
++.+|.|+..-|++- .+=.| -.|+-|.+||.|+.
T Consensus 310 Le~vK~emeerg~~m-tD~sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 310 LEQVKQEMEERGSSM-TDGSPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 999999998875433 23366 67888999999975
No 196
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=73.84 E-value=15 Score=39.66 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=43.5
Q ss_pred HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCC-----ChhhHH
Q 006153 509 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKP-----DVKSKC 583 (658)
Q Consensus 509 ~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p-----~~~~k~ 583 (658)
=++|.+.+.-|-++-+++++.-+ .++.+-..++....++-+.+ .++-..+|++|.|+..-|++. -+-.|+
T Consensus 268 EK~lNnqL~~l~q~fr~a~~~ls--e~~e~y~q~~~gv~~rT~~L---~eVm~e~E~~KqemEe~G~~msDGaplvkIkq 342 (384)
T KOG0972|consen 268 EKSLNNQLASLMQKFRRATDTLS--ELREKYKQASVGVSSRTETL---DEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQ 342 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccCCchHHHHHH
Confidence 45555555555555555555322 33334344444444444333 345567899999999988843 333344
Q ss_pred HHHHHHHHHH
Q 006153 584 KIQALEQQIK 593 (658)
Q Consensus 584 kie~l~~~I~ 593 (658)
-|-+|+++..
T Consensus 343 avsKLk~et~ 352 (384)
T KOG0972|consen 343 AVSKLKEETQ 352 (384)
T ss_pred HHHHHHHHHH
Confidence 4445544443
No 197
>PF13514 AAA_27: AAA domain
Probab=73.83 E-value=2.6e+02 Score=35.51 Aligned_cols=224 Identities=20% Similarity=0.306 Sum_probs=140.9
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcch
Q 006153 385 KGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDI 464 (658)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~l 464 (658)
|-+..+..||-. ...++++..+.+..-..+..|..|++.+..+.+- ..++...+..|..+.+ ++..+.....+
T Consensus 144 kprg~~~~in~~-l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~-----~~~l~~~~~~l~~~~~-~ler~~~~~p~ 216 (1111)
T PF13514_consen 144 KPRGRKPEINQA-LKELKELERELREAEVRAAEYQELQQALEEAEEE-----LEELRAELKELRAELR-RLERLRRAWPL 216 (1111)
T ss_pred CCCCCChHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHhHH
Confidence 344455555544 4578889999999999999999999999988743 3345666667777754 45667777778
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHH
Q 006153 465 KEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNE 544 (658)
Q Consensus 465 kek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ 544 (658)
-..+..|+.++..- ..--.+.++-.+++.++..+... +..-+..+.-++.-+..+...+.-.....+....|+.|.+
T Consensus 217 ~~~~~~l~~~l~~l--~~~~~~p~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~ 293 (1111)
T PF13514_consen 217 LAELQQLEAELAEL--GEVPDFPEDGAERLEQLEEELAE-AQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEE 293 (1111)
T ss_pred HHHHHHHHHHHHhc--CCcCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHH
Confidence 88888899988754 34446888888888888776442 2222555666666666554444443333455667777777
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHh----hCC----------CCChhhHHHHHHHHHHH---HHHHHHHcCChh-hH
Q 006153 545 EINKKIEDVINSSDLKDMIELLKLEIAK----AGK----------KPDVKSKCKIQALEQQI---KQRLSEAVNSSE-LK 606 (658)
Q Consensus 545 ei~kki~~~~~~~~ik~kiE~LK~Ev~~----ag~----------~p~~~~k~kie~l~~~I---~~~i~~a~~ss~-lk 606 (658)
....--...-+-|.+...+..++.++.. -|. .|+......|..|.++- .+.+..+-..-. ..
T Consensus 294 ~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~ 373 (1111)
T PF13514_consen 294 QRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAE 373 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666555555567777777666655543 231 33444466777776532 223333322222 55
Q ss_pred HHHHHHHHHHhh
Q 006153 607 EKHEELMAEISD 618 (658)
Q Consensus 607 ~k~E~Lk~e~a~ 618 (658)
..++.+..+++.
T Consensus 374 ~~~~~~~~~~~~ 385 (1111)
T PF13514_consen 374 RELEQLQAELAA 385 (1111)
T ss_pred HHHHHHHHHHhh
Confidence 555556666533
No 198
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.73 E-value=1.6e+02 Score=34.27 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=74.5
Q ss_pred hHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 006153 420 SLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKK 499 (658)
Q Consensus 420 ~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~ 499 (658)
.|+++|....+..... +.+++...+.|+.++|. -.|+++++.-|.-.... | ..|..+|..+.+
T Consensus 330 ~L~~eL~~~~~~~~~~----l~~~l~~~~~e~~~~~~-----~~i~~~v~~Er~~~~~~-------l-~~~~~~~~~le~ 392 (582)
T PF09731_consen 330 ELRQELKRQEEAHEEH----LKNELREQAIELQREFE-----KEIKEKVEQERNGRLAK-------L-AELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHH
Confidence 4555665555555444 67777777788877777 44555555544322211 0 112222222211
Q ss_pred ---HHHHHHHHH--HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhC
Q 006153 500 ---EIESELIDG--LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAG 574 (658)
Q Consensus 500 ---E~~~~l~~~--~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag 574 (658)
.....+... ...|-+-+.-|++.+..-.... +..|...+..|+.= .-++|-|.--+..|-.+....|
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~-~~p~~~el~~l~~~-------~~~d~~v~~~l~~l~~~a~~~G 464 (582)
T PF09731_consen 393 ALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGS-PRPFEDELRALKEL-------APDDELVDAALSSLPPEAAQRG 464 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCHHHHHHHHHHh-------CCCChHHHHHHHhcCHHHhhCC
Confidence 111111111 2222222333332211111100 13455555554432 3334456777777777777778
Q ss_pred CCCChhhHHHHHHHHHHHHHH
Q 006153 575 KKPDVKSKCKIQALEQQIKQR 595 (658)
Q Consensus 575 ~~p~~~~k~kie~l~~~I~~~ 595 (658)
..|...+.++-..+...++.-
T Consensus 465 v~s~~~L~~rf~~v~~~~r~~ 485 (582)
T PF09731_consen 465 VPSEAQLRNRFERVAPEVRRA 485 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777664
No 199
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.59 E-value=2.5e+02 Score=35.59 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q 006153 321 KLEDEVEKLKQQILKAKES 339 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~ 339 (658)
..+.++..|+++|-++++.
T Consensus 232 ~~~e~i~~l~k~i~e~~e~ 250 (1074)
T KOG0250|consen 232 LKEEEIKNLKKKIKEEEEK 250 (1074)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 3445555555555555543
No 200
>PRK09039 hypothetical protein; Validated
Probab=72.77 E-value=1.6e+02 Score=32.54 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHH
Q 006153 321 KLEDEVEKLKQQILK 335 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (658)
..+.|+..|..||..
T Consensus 50 ~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 50 GKDSALDRLNSQIAE 64 (343)
T ss_pred hHHHHHHHHHHHHHH
Confidence 456677777777765
No 201
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.71 E-value=1.4e+02 Score=36.82 Aligned_cols=112 Identities=24% Similarity=0.249 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHhhhc--CCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHH
Q 006153 321 KLEDEVEKLKQQILKAKES--STKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILM 398 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (658)
++|+.+..++.||-.-.-+ .-+--...|.++|.-++.+..+--+|. -.+..|+..+..|++--..+-+.+.-.|+
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel---E~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI---ENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 4666666666665432211 111123445666666655554433322 13566888888888766556666666777
Q ss_pred HH---HHHHHHHHhhccCCCCC-hhhHHHHHHHhhhhcccc
Q 006153 399 DK---ITELKNEFNQGLASAPN-YASLKYKLDMLKEFSNAK 435 (658)
Q Consensus 399 ~~---~~~~~~~~~~~~~~~~~-~~~Lk~ki~~~ke~s~~~ 435 (658)
+| |..+..+||+.|+.+.. -..|-+++.+++|-+.+.
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~n 213 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEK 213 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65 45566789999986542 234556666677666543
No 202
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.23 E-value=3.5e+02 Score=36.69 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHhhhc
Q 006153 321 KLEDEVEKLKQQILKAKES 339 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~ 339 (658)
..+.|+.+|+.++-+++.+
T Consensus 842 ~~~~e~~~l~~~l~~~e~~ 860 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKSESK 860 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 4567777787777776654
No 203
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.02 E-value=2.2e+02 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=18.8
Q ss_pred CCCCCCChH--HHHHHHHHHHHHHHHHHcCC
Q 006153 245 LGGAHADPS--WTSQQIKIAINESMDELGKM 273 (658)
Q Consensus 245 ~ggah~dp~--~tr~~L~~aL~~~L~eL~~l 273 (658)
.|++|.-|. .+..||.+.|..+-..+...
T Consensus 151 ~gspH~WP~iL~mlhWlvdlI~~~t~~v~~~ 181 (581)
T KOG0995|consen 151 AGSPHNWPHILGMLHWLVDLIRINTALVEDS 181 (581)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhHHHhhcc
Confidence 366677775 56778887777665555433
No 204
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=70.56 E-value=67 Score=31.78 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHc-------------CcHHHHHHHHHHhccCCCC-CCCCChHHHHHHHHHHHHHhhccC
Q 006153 348 LNVMIQKLKKEVDHEFSEAAKAM-------------GMQEKFATLRAEFSKGNSR-DQLMDPILMDKITELKNEFNQGLA 413 (658)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 413 (658)
-+.-|.+.+.|++.|+..|-.++ -|..++..+..-|-+-|.+ +.-.+- |. .-.+.-++|-...-
T Consensus 12 ~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~e-Lq-~tr~~I~eFi~~~K 89 (157)
T PF04778_consen 12 NDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNE-LQ-QTRKQIDEFINKNK 89 (157)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HH-HHHHHHHHHHhhcc
Confidence 46778899999999998887776 3455555555555555444 221111 11 11223358887889
Q ss_pred CCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHH
Q 006153 414 SAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEE 457 (658)
Q Consensus 414 ~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~e 457 (658)
.-|||..|=++|--.+..-.-...+--.+.|..--+++++-+.+
T Consensus 90 ~NpnY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~ 133 (157)
T PF04778_consen 90 NNPNYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNK 133 (157)
T ss_pred CCccHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHH
Confidence 99999988887777666555555544444555544444444443
No 205
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.03 E-value=1.8e+02 Score=31.70 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHh
Q 006153 440 SKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVV 519 (658)
Q Consensus 440 ~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~ 519 (658)
+..+...|.+|.++=..|--++...++||+.|=-|+++. +..|++...+..+|=+..=...-..+...|.-+
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~--------Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dI 119 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQ--------NKKLKEESKRRAREEEEKRKELSEKFQATLKDI 119 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888888889999999999999999988 456666555444433322222212222222222
Q ss_pred hhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHH
Q 006153 520 KSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDM 562 (658)
Q Consensus 520 ~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~k 562 (658)
..+.....+.+. +...-|.++..|+..+++.-++++.
T Consensus 120 q~~~ee~~~~~~------k~~~eN~~L~eKlK~l~eQye~rE~ 156 (309)
T PF09728_consen 120 QAQMEEQSERNI------KLREENEELREKLKSLIEQYELREE 156 (309)
T ss_pred HHHHHhccchhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 4556677777778777776665554
No 206
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.05 E-value=1.9e+02 Score=31.59 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChh-hHHHHHHH
Q 006153 349 NVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYA-SLKYKLDM 427 (658)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Lk~ki~~ 427 (658)
++=|.+|+.+-+.=++.+.. |-.-+..+++.....| .++.---.|...|++|-- +.+...-+|+.+ .|=++|..
T Consensus 68 neev~elK~kR~ein~kl~e---L~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~-~~~T~~L~~e~E~~lvq~I~~ 142 (294)
T COG1340 68 NEEVQELKEKRDEINAKLQE---LRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEK-KQQTSVLTPEEERELVQKIKE 142 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHH
Confidence 44445555544444444443 2222333333322222 222222334445555532 333444444443 23333333
Q ss_pred hhhh-ccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 006153 428 LKEF-SNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 475 (658)
Q Consensus 428 ~ke~-s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 475 (658)
+..- -.....++.+.++..|+.||+..-.+ +-.+.+++..|..+.
T Consensus 143 L~k~le~~~k~~e~~~~~~el~aei~~lk~~---~~e~~eki~~la~ea 188 (294)
T COG1340 143 LRKELEDAKKALEENEKLKELKAEIDELKKK---AREIHEKIQELANEA 188 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3211 11223333444555555555543332 233444444444443
No 207
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.55 E-value=1.7e+02 Score=34.47 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhc
Q 006153 583 CKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDA 619 (658)
Q Consensus 583 ~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~ 619 (658)
...+.|.+|++.- ++-+.+| ..+.+.|..|++.+
T Consensus 283 ~e~e~LkeqLr~~-qe~lqaS--qq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 283 QENEALKEQLRSA-QEQLQAS--QQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH
Confidence 3345566665543 2233333 46777788887555
No 208
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=67.25 E-value=1.4e+02 Score=35.48 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=100.1
Q ss_pred CChhhHHHHHHHhhhhcccc--ccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHH
Q 006153 416 PNYASLKYKLDMLKEFSNAK--SLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEK 493 (658)
Q Consensus 416 ~~~~~Lk~ki~~~ke~s~~~--~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkek 493 (658)
-+.+.|++|+-..+++.+.. +..+...+...-|.-++++++ ++++-==.++..|..+. .++-+.|...|+.+
T Consensus 256 ~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~-----~di~~~~~S~~~e~e~~-~~qI~~le~~l~~~ 329 (629)
T KOG0963|consen 256 REVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLS-----NDIERLEASLVEEREKH-KAQISALEKELKAK 329 (629)
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35678999999999888877 556655555555666666666 34433334455555444 44555667777766
Q ss_pred HHHHHHHHHHHHHHH--HhhcCcchhHhhhhhHHhh--hccccc-hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 006153 494 LVETKKEIESELIDG--LESLGLDVEVVKSKAKELS--EQTSFS-NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 568 (658)
Q Consensus 494 i~k~k~E~~~~l~~~--~~sl~~~~~~~~~~~k~~~--~~~~~~-~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~ 568 (658)
+..+. |....|-.- |.-++.+|.+|+ +.+.. +.+... +-.+..+.|=-+=|+++.. |.-.+
T Consensus 330 ~~~le-el~~kL~~~sDYeeIK~ELsiLk--~ief~~se~a~~~~~~~~~leslLl~knr~lq~-----------e~a~L 395 (629)
T KOG0963|consen 330 ISELE-ELKEKLNSRSDYEEIKKELSILK--AIEFGDSEEANDEDETAKTLESLLLEKNRKLQN-----------ENASL 395 (629)
T ss_pred HHHHH-HHHHHHhhhccHHHHHHHHHHHH--HhhcCCcccccccccccchHHHHHHHHHhhhhH-----------HHHHH
Confidence 55332 233233222 888888888887 44444 211111 3335666666666777663 34455
Q ss_pred HHHhhCCCC-ChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhcc
Q 006153 569 EIAKAGKKP-DVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDAT 620 (658)
Q Consensus 569 Ev~~ag~~p-~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~ 620 (658)
.|+.+|.++ -.+.+.|++.+.+++ ++.|+-+..|.--+.+--
T Consensus 396 r~~n~~~~~~~~~~~~~~~el~~~~----------~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 396 RVANSGLSGRITELSKKGEELEAKA----------TEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred hccccccchhHHHHHhhhhhhHHHH----------HHHHHHHHHHHhhHhhcc
Confidence 566666666 223355566665554 234555555555554443
No 209
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.74 E-value=3.2e+02 Score=33.81 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhcc
Q 006153 581 SKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDAT 620 (658)
Q Consensus 581 ~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~ 620 (658)
...||-+..||=... .|+-.+.++|++.||.-+.+=+
T Consensus 902 l~lki~s~kqeqee~---~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 902 LSLKIVSNKQEQEEL---LVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred chhcccchhhhHHHH---HHHHhhHHHHHHHHHHHHHHhC
Confidence 344566665554333 3444456666666666554443
No 210
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.74 E-value=1.5e+02 Score=38.87 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 006153 534 NFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEEL 612 (658)
Q Consensus 534 ~~~~k~~~l~~ei~kki~~~~~~~~-ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~L 612 (658)
+|..+++++..+++..=.+..+... ++.-=+.+..=+.-.|..|.....+.-.++-.+-.+.=.-|.+.+.+..++-.|
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 525 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSEL 525 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 5555666666555554444332222 222222333334455666666666664444444444444555555566555555
Q ss_pred HH
Q 006153 613 MA 614 (658)
Q Consensus 613 k~ 614 (658)
+.
T Consensus 526 ~~ 527 (1486)
T PRK04863 526 EQ 527 (1486)
T ss_pred HH
Confidence 54
No 211
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.45 E-value=3.1e+02 Score=34.89 Aligned_cols=240 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCC---CCCCCh
Q 006153 319 KEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSR---DQLMDP 395 (658)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 395 (658)
..++-.|.+.||..+.+|-+. -.-.-+-++.|..|-.+|-..--..++..++..+..++... -|+.|
T Consensus 155 SiElK~EYeelK~E~~kAE~~---------t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfh- 224 (1141)
T KOG0018|consen 155 SIELKPEYEELKYEMAKAEET---------TTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFH- 224 (1141)
T ss_pred hhhhhHHHHHHHHHHHHHHHH---------HhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccc------cchhHHHHHHHHHHHHHH---hHHhhcCcchHH
Q 006153 396 ILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKS------LLDSKNKAAKLKQEINKK---FEEVICRPDIKE 466 (658)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~------~~~~~~~~~~Lk~Ei~~~---~~ea~~~~~lke 466 (658)
+...|+++.++.++.=++-|-...=..+-...=+..+.+. ....+.+|......+... |+=+.++++++.
T Consensus 225 -vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~ 303 (1141)
T KOG0018|consen 225 -VEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKK 303 (1141)
T ss_pred -hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchh
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHH
Q 006153 467 KMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEI 546 (658)
Q Consensus 467 k~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei 546 (658)
|++..+-.+..+ +.=...+++-|+++.+++. -++..+++.
T Consensus 304 rl~~~~k~i~~~-----kk~~~~~~~~ie~~ek~l~-----------------------------------av~~~~~~f 343 (1141)
T KOG0018|consen 304 RLEEIEKDIETA-----KKDYRALKETIERLEKELK-----------------------------------AVEGAKEEF 343 (1141)
T ss_pred HHHHhhhhHHHH-----HHHHHhhHHHHHHHHHHHH-----------------------------------HHHHHHHHH
Q ss_pred HHHHHHhhc--------cchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcC----ChhhHHHHHHHHH
Q 006153 547 NKKIEDVIN--------SSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVN----SSELKEKHEELMA 614 (658)
Q Consensus 547 ~kki~~~~~--------~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~----ss~lk~k~E~Lk~ 614 (658)
.++|++-.. .++..+.++-||.|-.+-+ ..+++-||.+++-.-+..=+ .-++-+++..|+.
T Consensus 344 ekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~-------~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~ 416 (1141)
T KOG0018|consen 344 EKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA-------LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKE 416 (1141)
T ss_pred HHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 006153 615 EI 616 (658)
Q Consensus 615 e~ 616 (658)
.+
T Consensus 417 sv 418 (1141)
T KOG0018|consen 417 SV 418 (1141)
T ss_pred HH
No 212
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=62.75 E-value=3.8e+02 Score=33.26 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 006153 323 EDEVEKLKQQILKAKE 338 (658)
Q Consensus 323 ~~~~~~~~~~~~~~~~ 338 (658)
..++.+|..++-....
T Consensus 673 ~~~l~~l~~~l~~l~~ 688 (1164)
T TIGR02169 673 PAELQRLRERLEGLKR 688 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566777776665543
No 213
>PF15294 Leu_zip: Leucine zipper
Probab=62.65 E-value=1.8e+02 Score=31.55 Aligned_cols=217 Identities=23% Similarity=0.311 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhc--cCCCC-CCCCChH
Q 006153 321 KLEDEVEKLKQQILKAKESST-KPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFS--KGNSR-DQLMDPI 396 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~ 396 (658)
+++.....||.-+|.- +.|+ ......|+..---++.||+.|.-++....-|-=|-.--.+|=. +-..+ ..+-|..
T Consensus 12 ~Vds~F~Dlk~srL~e-~t~T~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~e 90 (278)
T PF15294_consen 12 EVDSCFQDLKSSRLRE-DTYTSDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRE 90 (278)
T ss_pred HHHHhhhHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 5566778888888884 4553 1222234444445567788888777655433222211111111 11122 4455677
Q ss_pred HHHHHHHH-HHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHH
Q 006153 397 LMDKITEL-KNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKL 475 (658)
Q Consensus 397 ~~~~~~~~-~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~ 475 (658)
|-+.|.+. +.+|-.+- .|+...-+.|+.-+++.... --++.+|.+|+.|-++ +++|+..+....
T Consensus 91 LLe~i~~~E~~~~~~~~--~~~~~~~~~KL~pl~e~g~~---~ll~kEi~rLq~EN~k----------Lk~rl~~le~~a 155 (278)
T PF15294_consen 91 LLEQIAEFEKQEFTSSF--KPNQETSKPKLEPLNESGGS---ELLNKEIDRLQEENEK----------LKERLKSLEKQA 155 (278)
T ss_pred HHHHHHHHHHhhhcccC--CccccccccccccccccchH---HHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 77777744 23333322 56677777778777776322 2267888999988654 677887777766
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhc
Q 006153 476 QDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVIN 555 (658)
Q Consensus 476 ~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~ 555 (658)
..+ +.|| ..++ ..++.|.+...-.+.+...........++.+++..++.++.+-+.+--.
T Consensus 156 t~~-----------l~Ek-----~kl~----~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~ 215 (278)
T PF15294_consen 156 TSA-----------LDEK-----SKLE----AQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKES 215 (278)
T ss_pred HHH-----------HHHH-----HHHH----HHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 554 2221 1222 2233333311111111111222233456788999999888887765543
Q ss_pred cc-hhHHHHHHHHHHHHhh
Q 006153 556 SS-DLKDMIELLKLEIAKA 573 (658)
Q Consensus 556 ~~-~ik~kiE~LK~Ev~~a 573 (658)
+- .|++.+-.-|.||-+.
T Consensus 216 ~~k~L~e~L~~~KhelL~~ 234 (278)
T PF15294_consen 216 QQKALEETLQSCKHELLRV 234 (278)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 22 3666666666665544
No 214
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.18 E-value=32 Score=39.79 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=50.9
Q ss_pred CCeEEEEEeeecCCCcc--------ccccccCCCC---CHHHH-----HHHHHHHHHhhhcCCcEEEEecCCCCCCChhH
Q 006153 82 DGRTYMFMGHQKGRNTK--------ENIQRNFGMP---TPHGY-----RKALRMMYYADHHGFPIVTFIDTPGAYADLKS 145 (658)
Q Consensus 82 ~GrpV~VIa~d~~~~~~--------e~~~~~gGsl---~p~g~-----rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~a 145 (658)
|+..|.|.|.|.=+... +++...+|.+ ...|| --|..+|++|.+.|.-| .|+||.|- +....
T Consensus 405 NkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDV-vLiDTAGR-~~~~~ 482 (587)
T KOG0781|consen 405 NKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDV-VLIDTAGR-MHNNA 482 (587)
T ss_pred CCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCE-EEEecccc-ccCCh
Confidence 57789999888533211 2222222211 12223 23556778888777765 47899994 44332
Q ss_pred HHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchh
Q 006153 146 EELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 179 (658)
Q Consensus 146 E~~Gq~~aiA~~l~als~a~VPiISVViG~a~GG 179 (658)
. +...+..+.....|-..+.+|++.=|
T Consensus 483 ~-------lm~~l~k~~~~~~pd~i~~vgealvg 509 (587)
T KOG0781|consen 483 P-------LMTSLAKLIKVNKPDLILFVGEALVG 509 (587)
T ss_pred h-------HHHHHHHHHhcCCCceEEEehhhhhC
Confidence 2 23344445566788888888887654
No 215
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.86 E-value=3e+02 Score=31.46 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCC
Q 006153 350 VMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSR 389 (658)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (658)
.-|..++++++.-..+ +..++..+..++.++....++
T Consensus 213 ~~i~~l~~e~~~l~~~---~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 213 ENIARKQNKYDELVEE---AKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555544433 334678888888888776543
No 216
>PRK09039 hypothetical protein; Validated
Probab=60.81 E-value=1.6e+02 Score=32.51 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHH-HcCChhhHHHH
Q 006153 538 KMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSE-AVNSSELKEKH 609 (658)
Q Consensus 538 k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~-a~~ss~lk~k~ 609 (658)
++..||++|.. |+..+..|..+|+.+-. -+.+.+.+|+.|.+.|+.-|++ +-+-..+++.|
T Consensus 138 ~V~~L~~qI~a----------Lr~Qla~le~~L~~ae~-~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 138 QVELLNQQIAA----------LRRQLAALEAALDASEK-RDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 66666666532 33444445544443332 2356788899999888888876 43444455554
No 217
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=59.35 E-value=52 Score=32.31 Aligned_cols=93 Identities=20% Similarity=0.352 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhccC-CCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhh
Q 006153 399 DKITELKNEFNQGLA-SAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQD 477 (658)
Q Consensus 399 ~~~~~~~~~~~~~~~-~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k 477 (658)
+.|+++|.+....+- .--.|..++.++..++ .-+.+.++.|+.|+. .+++.-+|+.+++.|+.+...
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k-----~ql~~~d~~i~~Lk~-------~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLK-----TQLKEADKQIKDLKK-------SAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh-------ccCCHHHHHHHHHHHHHHHHH
Confidence 457777777766652 2223344444444443 123345666777776 467777888888888887765
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006153 478 SGASSFSDLEDDLKEKLVETKKEIESELIDGLESLG 513 (658)
Q Consensus 478 ~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~ 513 (658)
+ ......++..++.. .-|..++.+.|
T Consensus 70 ~--------~~~~e~~l~~~~~~--~ai~~al~~ak 95 (155)
T PF06810_consen 70 A--------KEEYEAKLAQMKKD--SAIKSALKGAK 95 (155)
T ss_pred H--------HHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence 4 33455555555543 33444444433
No 218
>PRK02224 chromosome segregation protein; Provisional
Probab=59.26 E-value=4.1e+02 Score=32.45 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 006153 559 LKDMIELLKLEIA 571 (658)
Q Consensus 559 ik~kiE~LK~Ev~ 571 (658)
+.+.++.+...+.
T Consensus 389 l~~el~el~~~l~ 401 (880)
T PRK02224 389 LEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444444
No 219
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=58.89 E-value=3.5e+02 Score=31.53 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=6.2
Q ss_pred HhhcCcchhHhhhhh
Q 006153 509 LESLGLDVEVVKSKA 523 (658)
Q Consensus 509 ~~sl~~~~~~~~~~~ 523 (658)
..+|.-++..+++++
T Consensus 339 v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 339 VSSLEAELNKTRSEL 353 (522)
T ss_pred HhhHHHHHHHHHHHH
Confidence 344444444444333
No 220
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=58.74 E-value=62 Score=34.24 Aligned_cols=19 Identities=5% Similarity=0.181 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 006153 256 SQQIKIAINESMDELGKMD 274 (658)
Q Consensus 256 r~~L~~aL~~~L~eL~~l~ 274 (658)
...|-..|..+|..+..+-
T Consensus 6 L~~LNdRla~YIekVr~LE 24 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLE 24 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665543
No 221
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.98 E-value=3.6e+02 Score=31.47 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=26.4
Q ss_pred ChhhHHHHHHHhhhhccc--cccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 006153 417 NYASLKYKLDMLKEFSNA--KSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 478 (658)
Q Consensus 417 ~~~~Lk~ki~~~ke~s~~--~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~ 478 (658)
.+..+...+..++...+. ++..++.+..+++++|++.=-..--.--.++++++.++.++.+.
T Consensus 302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444443321 23444444455555555531111112233444555555554433
No 222
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.86 E-value=2.9e+02 Score=30.24 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhh--ccccccchhHHHHHHHHHH
Q 006153 373 QEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEF--SNAKSLLDSKNKAAKLKQE 450 (658)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~--s~~~~~~~~~~~~~~Lk~E 450 (658)
-+++..+|++-...|+.-|- |...+.+++..-|-.-...++..+|+..|..+-.. +++-+...-.+-+.++++
T Consensus 68 neev~elK~kR~ein~kl~e----L~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~- 142 (294)
T COG1340 68 NEEVQELKEKRDEINAKLQE----LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE- 142 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Confidence 35566666666665555332 56666666554442224566777777776655422 222222222333333333
Q ss_pred HHHHhHHhhcCcchHHHHHHHHHHHh
Q 006153 451 INKKFEEVICRPDIKEKMEAIKAKLQ 476 (658)
Q Consensus 451 i~~~~~ea~~~~~lkek~~~lk~E~~ 476 (658)
+-+++--+=++....+++..|++|+.
T Consensus 143 L~k~le~~~k~~e~~~~~~el~aei~ 168 (294)
T COG1340 143 LRKELEDAKKALEENEKLKELKAEID 168 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445545555556666665555554
No 223
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=57.70 E-value=9.7 Score=40.25 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=37.1
Q ss_pred eEEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 74 IVTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 74 VVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
-++|+-.+++.|=+++..|+. +=..++..|.+.|+|||.++||--
T Consensus 146 ~lgGIk~m~~~Pd~l~ViDp~--------------------~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 146 SLGGIKDMKGLPDVLFVIDPR--------------------KEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred hhcchhhccCCCCEEEEeCCc--------------------HhHHHHHHHHHcCCCEEEEecCCC
Confidence 457888888999999999986 333677899999999999999854
No 224
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.78 E-value=1.4e+02 Score=32.45 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHhhCCCCCh
Q 006153 504 ELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVI----NSSDLKDMIELLKLEIAKAGKKPDV 579 (658)
Q Consensus 504 ~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~----~~~~ik~kiE~LK~Ev~~ag~~p~~ 579 (658)
.|.+-+.+|..++.-++..+.+... .=+.+++.+++++..-=.++- .-.+++.+++.|+.+|.
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~-----~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~-------- 247 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIES-----CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE-------- 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3333455555555555533332221 112344444444443333332 12445555555555554
Q ss_pred hhHHHHHHHHHHHHHHHHHHcC---------ChhhHHHHHHHHHHH
Q 006153 580 KSKCKIQALEQQIKQRLSEAVN---------SSELKEKHEELMAEI 616 (658)
Q Consensus 580 ~~k~kie~l~~~I~~~i~~a~~---------ss~lk~k~E~Lk~e~ 616 (658)
+..+++.++..+|.+ ++...+ ...||.+++.|..-.
T Consensus 248 ~~~~~k~~l~~eI~e-~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 248 ELEEQKQELLAEIAE-AEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 335555556666553 222221 334666666666544
No 225
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=56.77 E-value=4.7e+02 Score=32.36 Aligned_cols=8 Identities=13% Similarity=-0.064 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 006153 418 YASLKYKL 425 (658)
Q Consensus 418 ~~~Lk~ki 425 (658)
|..++.++
T Consensus 208 ~~~~~~~~ 215 (1179)
T TIGR02168 208 QAEKAERY 215 (1179)
T ss_pred HHHHHHHH
Confidence 33333333
No 226
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=55.84 E-value=47 Score=37.94 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEE
Q 006153 108 PTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 108 l~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVV 172 (658)
-|..+..-+.++++.|+..+-|=|.++.=||..+-+=. .+. -+.+++ ++..+++|+||.|
T Consensus 173 QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW-~FN-dE~vaR---Ai~~s~iPvISAV 232 (440)
T COG1570 173 QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLW-AFN-DEIVAR---AIAASRIPVISAV 232 (440)
T ss_pred cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHh-ccC-hHHHHH---HHHhCCCCeEeec
Confidence 34556677888888888877554455544444332100 010 122333 4456789999865
No 227
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=55.61 E-value=6.8e+02 Score=33.89 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=11.2
Q ss_pred ChhhhHHHHHHHHHH
Q 006153 318 SKEKLEDEVEKLKQQ 332 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~ 332 (658)
.-.+|+.++.+||..
T Consensus 806 ~i~eL~~el~~lk~k 820 (1822)
T KOG4674|consen 806 RIKELERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888888776
No 228
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=53.52 E-value=46 Score=32.88 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 564 ELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 564 E~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
.-|=.|+.+.+. +.+...+..++.|...|..+++. .-.-.++|..++
T Consensus 102 q~l~~E~qk~~k----~v~~~~~~~~e~l~~~~K~~~D~--~~k~~~~~~~~l 148 (155)
T PF07464_consen 102 QSLVQESQKLAK----EVSENSEGANEKLQPAIKQAYDD--AVKAAQKVQKQL 148 (155)
T ss_dssp HHHHHHHHHHHH----HHHS---SS-GGGHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 445555555555 33344444444444444444443 333344444444
No 229
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=53.04 E-value=1.6e+02 Score=32.35 Aligned_cols=76 Identities=25% Similarity=0.270 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHH
Q 006153 469 EAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINK 548 (658)
Q Consensus 469 ~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~k 548 (658)
++||++...++-.......+++++-|+.+-.+++.....+-..|...++-.. .....+ .+++..|.+.|++
T Consensus 63 ~~lk~~Ye~~~k~~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~---~e~~~k------~~~v~~l~e~I~~ 133 (319)
T KOG0796|consen 63 EALKADYERASKERDYGYEWDALEILERFVADVDRRIEKAKERLAETVEERS---EEAARK------AEKVHELEEKIGK 133 (319)
T ss_pred HHHHHHHhhchHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHH------HHHHHHHHHHHHH
Confidence 6778888777666678888889999999999999997777666655544111 111110 3467777777777
Q ss_pred HHHHh
Q 006153 549 KIEDV 553 (658)
Q Consensus 549 ki~~~ 553 (658)
.++++
T Consensus 134 ~l~~~ 138 (319)
T KOG0796|consen 134 LLEKA 138 (319)
T ss_pred HHHHH
Confidence 76643
No 230
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.71 E-value=4.8e+02 Score=31.02 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=7.1
Q ss_pred ChhhhHHHHHHHHH
Q 006153 318 SKEKLEDEVEKLKQ 331 (658)
Q Consensus 318 ~~~~~~~~~~~~~~ 331 (658)
+..|+..-+++..+
T Consensus 218 ~~~Elk~~l~~~~~ 231 (581)
T KOG0995|consen 218 LEDELKHRLEKYFT 231 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 231
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.71 E-value=4.8e+02 Score=33.25 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHhh
Q 006153 557 SDLKDMIELLKLEIAKA 573 (658)
Q Consensus 557 ~~ik~kiE~LK~Ev~~a 573 (658)
+++-+|++.|+.||.+.
T Consensus 397 ~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666543
No 232
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=50.55 E-value=39 Score=30.01 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 006153 464 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELID 507 (658)
Q Consensus 464 lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~ 507 (658)
|++.++.|+.|+. +..++|+..+..+..+.++++..|..
T Consensus 2 L~~~L~~L~~eL~-----~~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 2 LQELLEKLHQELE-----QNPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred HHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888887 44668888888888888888765554
No 233
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=49.91 E-value=1.5e+02 Score=34.47 Aligned_cols=200 Identities=20% Similarity=0.210 Sum_probs=114.9
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhH-----H-hhcCcchHHHHHHHHHH
Q 006153 401 ITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFE-----E-VICRPDIKEKMEAIKAK 474 (658)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~-----e-a~~~~~lkek~~~lk~E 474 (658)
..+|-.-+.++++.-|-..+.++---.+.- ...++. ..++|-+|++--+. | -+.+-|++--++-||-|
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~-----sa~Ele-eGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmE 584 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADM-----SAKELE-EGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKME 584 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhccc-----chhhhh-hhHHHHHhhcccccCCccceeecccccccchhhhhhee
Confidence 567888899999999954444332222221 111222 24566666643221 1 14456777778888887
Q ss_pred HhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhh
Q 006153 475 LQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVI 554 (658)
Q Consensus 475 ~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~ 554 (658)
++ +..+++.+.-+||-=+.-||. +|+++..+-.++.- ..|.-++|+.|++-++.
T Consensus 585 ls-----t~kDlekG~Aeki~~me~Ei~--------glq~DkQ~ar~qIh-------------~Le~~Reelsk~V~DLt 638 (790)
T PF07794_consen 585 LS-----TSKDLEKGYAEKIGFMEMEIG--------GLQADKQTARNQIH-------------RLEQRREELSKRVMDLT 638 (790)
T ss_pred ec-----cccchhhhhHhhhhhhhhhhc--------chhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Confidence 65 668999999999998777765 44444443332222 34446778888888887
Q ss_pred ccc-hhHHHHHHHHHHHHhhCCCCChhhHHH----------------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHh
Q 006153 555 NSS-DLKDMIELLKLEIAKAGKKPDVKSKCK----------------IQALEQQIKQRLSEAVNSSELKEKHEELMAEIS 617 (658)
Q Consensus 555 ~~~-~ik~kiE~LK~Ev~~ag~~p~~~~k~k----------------ie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a 617 (658)
.++ +-|.-+-.-|.|+|.+=..=....|+| +|+=-.-|.|-.-.+|++...|..+.-+--++-
T Consensus 639 ssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~e 718 (790)
T PF07794_consen 639 SSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLE 718 (790)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHH
Confidence 766 366666666777775544333344444 444444566666777777755554433333332
Q ss_pred hccCCCCCCCCCccC
Q 006153 618 DATKSPGGLDGGVNN 632 (658)
Q Consensus 618 ~~~~~~~~~~~s~~~ 632 (658)
.+-++..-+|=+|.+
T Consensus 719 a~ck~keVSDftlSK 733 (790)
T PF07794_consen 719 ARCKSKEVSDFTLSK 733 (790)
T ss_pred hhhhhcccccceecc
Confidence 233333444444443
No 234
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=49.86 E-value=13 Score=40.73 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=35.4
Q ss_pred EEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 75 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 75 VtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
+.|+-.+.+.|-+||..|+. +=..++..|.+.|+|+|.|+||-.
T Consensus 143 l~Gi~~m~~~Pd~viv~d~~--------------------~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 143 LGGIKDMGGLPDLLFVIDTN--------------------KEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccchhhcccCCCEEEEeCCc--------------------cchHHHHHHHHcCCCEEEEeeCCC
Confidence 45777778889888888875 123678999999999999999865
No 235
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=48.78 E-value=5.8 Score=47.37 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccC
Q 006153 348 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKG 386 (658)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (658)
+..-|.+|+++++.=...|-.+-.|.|-+.-+|+.-.++
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~ 310 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRA 310 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677888888888888888889999888888876665
No 236
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.56 E-value=3.5e+02 Score=28.53 Aligned_cols=139 Identities=27% Similarity=0.393 Sum_probs=77.4
Q ss_pred HHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhc
Q 006153 353 QKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFS 432 (658)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s 432 (658)
.||+.|||.=+..... |+ +-|..+-.-+..+++++| ++|++ .-||..|-+|..+-
T Consensus 4 RKLQ~Eid~~lKkv~E--G~-~~F~~i~~K~~~~~n~~Q------KEK~E----------------~DLKkEIKKLQR~R 58 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQE--GV-EEFDEIYEKVESATNQNQ------KEKLE----------------ADLKKEIKKLQRLR 58 (233)
T ss_pred hhHHHHHHHHHHHHHH--HH-HHHHHHHHHHHcccCcch------HHHHH----------------HHHHHHHHHHHHHH
Confidence 5788888876654432 22 234455555555655555 45555 23444444443332
Q ss_pred cc-------cccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 006153 433 NA-------KSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESEL 505 (658)
Q Consensus 433 ~~-------~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l 505 (658)
.. ....|++ -=.|--+.+-..|.+.-.=||=.+.|+ +|+.|-+....+||.-++|. |...-|
T Consensus 59 dQIK~W~~~~diKdk~-----~L~e~Rk~IE~~MErFK~vEkesKtKa-fSkeGL~~~~k~dp~e~ek~-----e~~~wl 127 (233)
T PF04065_consen 59 DQIKTWLSSNDIKDKK-----KLLENRKLIEEQMERFKVVEKESKTKA-FSKEGLMAASKLDPKEKEKE-----EARDWL 127 (233)
T ss_pred HHHHHHccCcccccHH-----HHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhcccccCcchHHHH-----HHHHHH
Confidence 21 1111211 224555667778888888888777777 77777666666777665554 455556
Q ss_pred HHHHhhcCcchhHhhhhhHHhh
Q 006153 506 IDGLESLGLDVEVVKSKAKELS 527 (658)
Q Consensus 506 ~~~~~sl~~~~~~~~~~~k~~~ 527 (658)
..+...|...++.+.+.+-.|+
T Consensus 128 ~~~Id~L~~QiE~~E~E~E~L~ 149 (233)
T PF04065_consen 128 KDSIDELNRQIEQLEAEIESLS 149 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665554444443
No 237
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.29 E-value=1.4e+02 Score=35.68 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 006153 447 LKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 502 (658)
Q Consensus 447 Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~ 502 (658)
...|+-.-.++. ..+.++++.|+.|++ .|+.+|+++++|++
T Consensus 413 e~~ei~~~~~~i---~~~~~~ve~l~~e~~------------~L~~~~ee~k~eie 453 (652)
T COG2433 413 ERREITVYEKRI---KKLEETVERLEEENS------------ELKRELEELKREIE 453 (652)
T ss_pred cccchhHHHHHH---HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 444444444433 235566777777665 45666666666543
No 238
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=47.44 E-value=15 Score=38.81 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=34.2
Q ss_pred EEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 75 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 75 VtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
..|+-.+.+.|-+||..|+. +=..++..|.+.|+|+|.|+||..
T Consensus 148 ~~Gi~~m~~~Pd~iii~d~~--------------------~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 148 LGGIKDMGGLPDALFVVDPN--------------------KEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred ccCccccccCCCEEEEeCCC--------------------ccHHHHHHHHHhCCCEEEEeeCCC
Confidence 35666677788888888875 223678899999999999999865
No 239
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.04 E-value=1.4e+02 Score=29.12 Aligned_cols=37 Identities=27% Similarity=0.514 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 006153 463 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 502 (658)
Q Consensus 463 ~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~ 502 (658)
.++.....|++|+..- ...+-+.+|...|.+++.|..
T Consensus 90 ~l~~~~k~l~~eL~~L---~~~~t~~el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 90 ELKKEVKSLEAELASL---SSEPTNEELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHH
Confidence 4666677777777755 677888889999998888854
No 240
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=46.93 E-value=3.8e+02 Score=28.45 Aligned_cols=140 Identities=19% Similarity=0.353 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhh
Q 006153 441 KNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 520 (658)
Q Consensus 441 ~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~ 520 (658)
+.....+-..+-.++.+.++.+..++++..+=.++...-... .....+-+++...-..+ +..+.-+.
T Consensus 137 ~~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~--~~~~~l~~~i~~~l~~~-------l~~l~~~~---- 203 (367)
T PF04286_consen 137 EEQHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGK--SFLDKLAEKIQDELDSL-------LEKLQEDP---- 203 (367)
T ss_pred ccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHH-------HHHHHhCc----
Confidence 444566777788888888889988888877777665542111 11222222222111111 11111000
Q ss_pred hhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHc
Q 006153 521 SKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAV 600 (658)
Q Consensus 521 ~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~ 600 (658)
+ ..++ ..+.+.+.+.+.++.++|.+.++++.++...-. +......++.+-+.+...|.+-+
T Consensus 204 -------~----~~lr---~~~~~~l~~~i~~L~~d~~~~~~i~~~~~~~l~-----~~~~~~~~~~l~~~l~~~i~~~l 264 (367)
T PF04286_consen 204 -------D----HPLR---QEIDQKLRELIERLLTDPELREKIEELKDKLLS-----ELILEEFLEELWDSLREWIKEDL 264 (367)
T ss_pred -------c----cHhH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0111 225556667777888888888888888764432 22234455556666666666666
Q ss_pred CChh-hHHHHHHH
Q 006153 601 NSSE-LKEKHEEL 612 (658)
Q Consensus 601 ~ss~-lk~k~E~L 612 (658)
+.++ ++..+..+
T Consensus 265 ~~~~~i~~~i~~~ 277 (367)
T PF04286_consen 265 SREEFIEQIISEL 277 (367)
T ss_pred cchHHHHHHHHHH
Confidence 6533 33333333
No 241
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=46.78 E-value=1.7e+02 Score=32.23 Aligned_cols=99 Identities=26% Similarity=0.414 Sum_probs=56.0
Q ss_pred HHHHHHHHH---HHHHhHHhhcCcc-hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 006153 442 NKAAKLKQE---INKKFEEVICRPD-IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 517 (658)
Q Consensus 442 ~~~~~Lk~E---i~~~~~ea~~~~~-lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~ 517 (658)
+....|+.| +.+++.||-...- |++++...|.+....+.+.+..=-..|...+++++... ..|..++.
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~--------~qLe~d~q 150 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQI--------EQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 334445555 4567777665433 67888888888876655544433334555555555442 23333333
Q ss_pred Hhh-hhhHHhhhccccchhhhhHHHHHHHHHHHHH
Q 006153 518 VVK-SKAKELSEQTSFSNFRSKMENLNEEINKKIE 551 (658)
Q Consensus 518 ~~~-~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~ 551 (658)
.+. -+-....| -..|+.|+..||.|+|--+-
T Consensus 151 s~lDEkeEl~~E---RD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 151 SLLDEKEELVTE---RDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 333 11122222 22688899999999987664
No 242
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.58 E-value=1.1e+02 Score=36.69 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCCChH---HHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhh
Q 006153 483 FSDLEDD---LKEKLVETKKEIESELIDGLESLGLDVEVVKSKA 523 (658)
Q Consensus 483 ~~~l~~~---Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~ 523 (658)
..+-||. ++..|..++..+.+++.....++...++.+..+.
T Consensus 311 y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~ 354 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARE 354 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554 5668888888888888887777766666555333
No 243
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.13 E-value=1.9e+02 Score=27.98 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHhhC
Q 006153 558 DLKDMIELLKLEIAKAG 574 (658)
Q Consensus 558 ~ik~kiE~LK~Ev~~ag 574 (658)
.+..+|.+|--|+..+.
T Consensus 77 ~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 35555555555555443
No 244
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=44.86 E-value=63 Score=35.77 Aligned_cols=110 Identities=22% Similarity=0.272 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHH--------------HHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcc
Q 006153 398 MDKITELKNEFNQGLASAPNYASLKY--------------KLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPD 463 (658)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~Lk~--------------ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~ 463 (658)
++.|++|.++|.+.|+.+.+...|.+ .+..++..+. -.....-+.+.++|++|...|.+......
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~~l~~-eer~~~G~~~n~~k~~~~~~~~~~~~~l~ 80 (339)
T PRK00488 2 MEDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLGKLPP-EERKEAGALINELKQAIEAALEERKEELE 80 (339)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666654433322 2222332221 11223345678899999999987766555
Q ss_pred hHHHHHHHHHHHhhc---C-CCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 006153 464 IKEKMEAIKAKLQDS---G-ASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 517 (658)
Q Consensus 464 lkek~~~lk~E~~k~---~-~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~ 517 (658)
-++.-+.|..|.-.. + ......+|| |.++.++ +...+.+||..+-
T Consensus 81 ~~~~~~~l~~e~~d~t~p~~~~~~G~~HP-----l~~~~~~----Ir~if~~mGF~ev 129 (339)
T PRK00488 81 AAALNARLAAETIDVTLPGRRIELGSLHP-----ITQTIEE----IEDIFVGMGFEVA 129 (339)
T ss_pred HHHHHHhhhhccccccCCCCCCCCCCCCH-----HHHHHHH----HHHHHHhCCCEEE
Confidence 555445555442222 1 122345555 4445555 4455666776543
No 245
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.78 E-value=2.1e+02 Score=36.78 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHHHHH
Q 006153 556 SSDLKDMIELLKLEIA 571 (658)
Q Consensus 556 ~~~ik~kiE~LK~Ev~ 571 (658)
+..+++.+..|+.+|.
T Consensus 618 ~~~~~e~~~~l~~~i~ 633 (1317)
T KOG0612|consen 618 RTEISEIIAELKEEIS 633 (1317)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3456666666666665
No 246
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=44.60 E-value=46 Score=36.17 Aligned_cols=68 Identities=32% Similarity=0.429 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHH-hchHHHHHHHHHHHhcCCCCEEEEEcCCCchhh
Q 006153 111 HGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEE-LGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGG 180 (658)
Q Consensus 111 ~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~-~Gq~~aiA~~l~als~a~VPiISVViG~a~GGG 180 (658)
.+.+++.+ .+++++++=.|.++|.+|=-+..+.|. .|-.-+-+-.++++..+..|.+..|+|++.=|+
T Consensus 103 ~~l~~al~--~l~~~~~iD~Ii~VDvGgDvLa~G~E~~L~SPlaDa~sLAal~~l~~~~~l~v~G~G~Dge 171 (297)
T PF06626_consen 103 QGLARALR--ELAEKLGIDAIILVDVGGDVLARGDEPGLGSPLADAISLAALAKLEEPVILAVIGFGVDGE 171 (297)
T ss_pred HHHHHHHH--HHHHHcCCCEEEEEecCCceEeecCccccCChHHHHHHHHHHHhcCCceEEEEEeCCcCCC
Confidence 34444333 577899999999999999766555443 444445566677778888899999999976553
No 247
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=44.01 E-value=20 Score=37.17 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=33.9
Q ss_pred EEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 75 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 75 VtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
..|+..+...|-.||..++. +=..++..|.+.|+|+|.++||..
T Consensus 146 ~~Gi~~m~~~Pd~vii~d~~--------------------~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 146 LGGIKDMKKLPDLLFVIDPV--------------------KEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred ccCccccccCCCEEEEeCCC--------------------ccHHHHHHHHHcCCCEEEEeeCCC
Confidence 35666667778888888875 223678899999999999999865
No 248
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.85 E-value=8e+02 Score=31.30 Aligned_cols=239 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHc--------CcHHHHHHHHHHhccCCCCCCCCChHHHHH---HHHHHHHHhhccCCCC
Q 006153 348 LNVMIQKLKKEVDHEFSEAAKAM--------GMQEKFATLRAEFSKGNSRDQLMDPILMDK---ITELKNEFNQGLASAP 416 (658)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 416 (658)
|++ ...--+++|+++.....-| .+...-..++.|+...+..-+.++-.+.-| ++.++....+..+..-
T Consensus 687 L~~-~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 687 LDE-VRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSN 765 (1200)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ChhhHHHHHHHhhhhcc-ccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHH
Q 006153 417 NYASLKYKLDMLKEFSN-AKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLV 495 (658)
Q Consensus 417 ~~~~Lk~ki~~~ke~s~-~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~ 495 (658)
++++..-.-+-...... ...++-+|..|.+|..+.+.=..+.++.++.+..+++.-. .|+.
T Consensus 766 ~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~------------------~kL~ 827 (1200)
T KOG0964|consen 766 YFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN------------------TKLY 827 (1200)
T ss_pred hHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q ss_pred HHHHHHHHHHHHH-HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhC
Q 006153 496 ETKKEIESELIDG-LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAG 574 (658)
Q Consensus 496 k~k~E~~~~l~~~-~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag 574 (658)
+-..+..+++... =-+++.+++-++ ....+......+.......|...|.++..++ .+++.-.|.++. .+
T Consensus 828 ~r~~~l~~ei~~~~d~~~~~el~~~~--~el~~~~~~~e~~~~el~~l~~~i~~~~a~~---~~~~~~lE~~~~-le--- 898 (1200)
T KOG0964|consen 828 KRVNELEQEIGDLNDSSRRSELELEK--SELESEEKRVEAAILELKTLQDSIDKKKAEI---KEIKKELEKAKN-LE--- 898 (1200)
T ss_pred hhhhHHHHHhhhcccccchhhhhHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHH-HH---
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHHhhccCCC
Q 006153 575 KKPDVKSKCKIQALEQQIKQRLSEAVNSSE-LKEKHEELMAEISDATKSP 623 (658)
Q Consensus 575 ~~p~~~~k~kie~l~~~I~~~i~~a~~ss~-lk~k~E~Lk~e~a~~~~~~ 623 (658)
+.+-..++.+ +++|..++--. |..|-|++..-|-.-|--|
T Consensus 899 -------k~~~~~~~~d--Ke~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp 939 (1200)
T KOG0964|consen 899 -------KEKKDNINFD--KELEKLVRRKHMLLKKREECCEKIRELGVLP 939 (1200)
T ss_pred -------HHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
No 249
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=43.49 E-value=1.8e+02 Score=24.94 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 006153 464 IKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGL 509 (658)
Q Consensus 464 lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~ 509 (658)
|+.++..|+.--.+.-.+.+++ ..++++|+.+-.|+++......
T Consensus 19 i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~ 62 (103)
T PF00804_consen 19 IKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIK 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333332333322 5788889988888887766663
No 250
>CHL00067 rps2 ribosomal protein S2
Probab=43.37 E-value=21 Score=37.17 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEEEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 75 VTGIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 75 VtG~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
+.|+-.+...|-+||..++. +=..++..|.+.|+|+|.++||..
T Consensus 152 ~~Gi~~m~~~P~~iiv~d~~--------------------~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 152 LGGIKYMTKLPDIVIIIDQQ--------------------EEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred hccccccccCCCEEEEeCCc--------------------ccHHHHHHHHHcCCCEEEEEeCCC
Confidence 35565666788888888875 122678999999999999999865
No 251
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.18 E-value=40 Score=35.36 Aligned_cols=42 Identities=43% Similarity=0.563 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccc
Q 006153 489 DLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTS 531 (658)
Q Consensus 489 ~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~ 531 (658)
++|+|++.+.+| +.+|..-+..|.-+++-++-+.|.+-..++
T Consensus 139 e~kekl~E~~~E-keeL~~eleele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 139 ELKEKLEELQKE-KEELLKELEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 334444455556666666666666555433
No 252
>COG1160 Predicted GTPases [General function prediction only]
Probab=42.86 E-value=2.6e+02 Score=32.24 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCCC--HHHHHhhhcccceEccCCCCCCCCCceEEEEEEECCeEEEEEeeecCCCccccccccC-CCCCHHHHHHHHHHH
Q 006153 44 NRPT--FLDHVFNITEKFVELHGDRAGYDDPAIVTGIGSMDGRTYMFMGHQKGRNTKENIQRNF-GMPTPHGYRKALRMM 120 (658)
Q Consensus 44 ~Rp~--are~I~~L~D~F~EL~gd~~~~dD~aVVtG~GrI~GrpV~VIa~d~~~~~~e~~~~~g-Gsl~p~g~rKa~R~i 120 (658)
+||. =..++.+|+..-.-+-.|+.|-. .--+.|.+.+.|+++.+|=+- | +.... ..+......++..++
T Consensus 10 GRPNVGKSTLFNRL~g~r~AIV~D~pGvT-RDr~y~~~~~~~~~f~lIDTg-G------l~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 10 GRPNVGKSTLFNRLTGRRIAIVSDTPGVT-RDRIYGDAEWLGREFILIDTG-G------LDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CCCCCcHHHHHHHHhCCeeeEeecCCCCc-cCCccceeEEcCceEEEEECC-C------CCcCCchHHHHHHHHHHHHHH
Confidence 4555 35567777763333333333221 113688999999996655331 1 00000 234455666777777
Q ss_pred HHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcC------CCchhhhhhhccccEE
Q 006153 121 YYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIG------EGGSGGALAIGCANKL 190 (658)
Q Consensus 121 ~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG------~a~GGGAlalg~aD~V 190 (658)
..|+ -||+++|.--. +....+ .+|..+. ...+|+|-||+- .+.-+-+|.+|.++.+
T Consensus 82 ~eAD----vilfvVD~~~G-it~~D~------~ia~~Lr---~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~ 143 (444)
T COG1160 82 EEAD----VILFVVDGREG-ITPADE------EIAKILR---RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPV 143 (444)
T ss_pred HhCC----EEEEEEeCCCC-CCHHHH------HHHHHHH---hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCce
Confidence 7777 37888885332 222222 3677775 457999998872 2333346677777754
No 253
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=42.31 E-value=9e+02 Score=31.48 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 589 EQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 589 ~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
++|++.-+..+-+.-+-.+|.++|-.++
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i 726 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEI 726 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3444444444444455667777766665
No 254
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.30 E-value=2.1e+02 Score=28.13 Aligned_cols=72 Identities=10% Similarity=0.131 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 006153 536 RSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAE 615 (658)
Q Consensus 536 ~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e 615 (658)
+.++.++.++-..+...+ +-.|..|=..|.++.+ +|.|+ .+||.+|.+||..=-. .|-++.-++..+
T Consensus 49 Qa~~q~I~~~f~~~t~~L--RqqL~aKr~ELnALl~----~~~pD-~~kI~aL~kEI~~Lr~------kL~e~r~~~~~~ 115 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSAL--RQQLVSKRYEYNALLT----ANPPD-SSKINAVAKEMENLRQ------SLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 344555555555444433 2334555556666543 44444 5689999998865321 456666678888
Q ss_pred Hhhcc
Q 006153 616 ISDAT 620 (658)
Q Consensus 616 ~a~~~ 620 (658)
++|+|
T Consensus 116 ~~k~G 120 (143)
T PRK11546 116 MAEAG 120 (143)
T ss_pred HHHcC
Confidence 88873
No 255
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.06 E-value=6.6e+02 Score=29.83 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhhc
Q 006153 257 QQIKIAINESMDELGKMDTQE-LLKHRNLKFRKI 289 (658)
Q Consensus 257 ~~L~~aL~~~L~eL~~l~~~~-ll~~R~~k~r~~ 289 (658)
..|-+.|...++.+..|..+. .|.+.+.-+|.-
T Consensus 45 ~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666777777777776654 556666665543
No 256
>COG5570 Uncharacterized small protein [Function unknown]
Probab=41.84 E-value=26 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.6
Q ss_pred HHHHHHHHhhccc
Q 006153 545 EINKKIEDVINSS 557 (658)
Q Consensus 545 ei~kki~~~~~~~ 557 (658)
.+..+|.++||+|
T Consensus 16 ~le~ei~ea~n~P 28 (57)
T COG5570 16 NLEREIQEAMNSP 28 (57)
T ss_pred hHHHHHHHHhcCC
Confidence 3455678999998
No 257
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.48 E-value=8.7e+02 Score=31.06 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCCCCCCCccccccccccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcC
Q 006153 292 FQEGIPIDPKKKVNMKKKEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMG 371 (658)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (658)
..+|.-|||+--..==.+ .++..+-..+.+|++.-.+-.. ...=++.|.+++..=.+.+.+--.
T Consensus 649 Tl~GDV~dP~GtlTGGs~-------~~~a~~L~~l~~l~~~~~~~~~---------~q~el~~le~eL~~le~~~~kf~~ 712 (1174)
T KOG0933|consen 649 TLEGDVYDPSGTLTGGSR-------SKGADLLRQLQKLKQAQKELRA---------IQKELEALERELKSLEAQSQKFRD 712 (1174)
T ss_pred eecCceeCCCCcccCCCC-------CCcccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888765432221 3455566677777654332111 122345556666555666666666
Q ss_pred cHHHHHHHHHHhccC--CCCCCCCChHHHHHHHHHHHHHhhccCCCCC-----------hhhHHHHHHHhhhhccccccc
Q 006153 372 MQEKFATLRAEFSKG--NSRDQLMDPILMDKITELKNEFNQGLASAPN-----------YASLKYKLDMLKEFSNAKSLL 438 (658)
Q Consensus 372 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~Lk~ki~~~ke~s~~~~~~ 438 (658)
|+.-|...-.+++-. +. +|.-+--+-+.++++.++....=+.-++ +..|-+++...+ ..+...+.
T Consensus 713 l~~ql~l~~~~l~l~~~r~-~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~-~~re~rlk 790 (1174)
T KOG0933|consen 713 LKQQLELKLHELALLEKRL-EQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK-ANRERRLK 790 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHhHHH
Confidence 666666666665544 22 3333333444455555543321111111 111111111111 11122333
Q ss_pred hhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 006153 439 DSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 502 (658)
Q Consensus 439 ~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~ 502 (658)
|+-+.|+++|+.++..=++-=++-..-+++..=-+|+.++ -++..-....+...|..++.|+.
T Consensus 791 dl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e-~~~~k~~l~~~~~~~~~l~~e~~ 853 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE-ISSLKQQLEQLEKQISSLKSELG 853 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444444444444444444444444 23334444556666666666543
No 258
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.90 E-value=8.9e+02 Score=31.00 Aligned_cols=178 Identities=22% Similarity=0.233 Sum_probs=90.0
Q ss_pred ChhhHHHHHHHhhhhcc--ccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHH
Q 006153 417 NYASLKYKLDMLKEFSN--AKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKL 494 (658)
Q Consensus 417 ~~~~Lk~ki~~~ke~s~--~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki 494 (658)
.|+.|+++|..++.+-. ....+-+-..+.+||..+.+.-. .-.-+..|++-|.+++..- ..=+-.|-.+|
T Consensus 482 et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~---qye~~~~k~eeLe~~l~~l-----E~ENa~LlkqI 553 (1195)
T KOG4643|consen 482 ETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDI---QYELLSNKLEELEELLGNL-----EEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHH
Confidence 56778888777774431 11111111222333333222111 1123455666666655422 22234566677
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHH-HHHHHHhhccc-hhHHHHHHHHHHHHh
Q 006153 495 VETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEI-NKKIEDVINSS-DLKDMIELLKLEIAK 572 (658)
Q Consensus 495 ~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei-~kki~~~~~~~-~ik~kiE~LK~Ev~~ 572 (658)
-.|+.= . .=...|.--...++...-..+...++ ...++..-+.|..+| |+.+.+ .| ++|.+|+-|+.=+.+
T Consensus 554 ~~Lk~t-~-qn~~~LEq~~n~lE~~~~elkk~ida--L~alrrhke~LE~e~mnQql~~---d~~~~kr~ie~Lr~~~~k 626 (1195)
T KOG4643|consen 554 QSLKTT-S-QNGALLEQNNNDLELIHNELKKYIDA--LNALRRHKEKLEEEIMNQQLFE---DPIPLKRDIEWLRRKESK 626 (1195)
T ss_pred HHHHHH-h-HHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhh---cCCchhhhHHHHHHHHHh
Confidence 766652 0 01112333333444333344444443 124555566777777 665553 36 899999999884332
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 573 AGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 573 ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
. ++.|-+-.+.+.+.-.-+=++++.+++++..|..+.
T Consensus 627 l-------l~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~f 663 (1195)
T KOG4643|consen 627 L-------LKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEF 663 (1195)
T ss_pred h-------cchhHHHHHHHHhhccccchhHHHHHHHHHhCchhh
Confidence 2 234444444443333333367778999999998885
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.72 E-value=3.9e+02 Score=32.57 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.3
Q ss_pred CcEEEEecCCCCCCC
Q 006153 128 FPIVTFIDTPGAYAD 142 (658)
Q Consensus 128 lPIV~LiDTpGa~~g 142 (658)
.||+.|..+|..|+.
T Consensus 241 ~p~~vL~~ng~v~~~ 255 (717)
T PF10168_consen 241 WPIFVLRENGDVYLL 255 (717)
T ss_pred ccEEEEecCCCEEEE
Confidence 588888888877763
No 260
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.66 E-value=3.3e+02 Score=29.43 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=27.7
Q ss_pred HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHH
Q 006153 509 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIE 551 (658)
Q Consensus 509 ~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~ 551 (658)
+++.|++|+-|++++-++.+.-...+-+...+.-+++..++++
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998888853322223333444444444443
No 261
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.37 E-value=2.9e+02 Score=32.68 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhhhhhHHhhhc--cccch---hhhhHHHHHHHHHHH
Q 006153 487 EDDLKEKLVETKKEIESELIDGLESL--GLDVEVVKSKAKELSEQ--TSFSN---FRSKMENLNEEINKK 549 (658)
Q Consensus 487 ~~~Lkeki~k~k~E~~~~l~~~~~sl--~~~~~~~~~~~k~~~~~--~~~~~---~~~k~~~l~~ei~kk 549 (658)
+...-++|.+.=++..+.....+++| +.+++-++.+++.+..+ +.+.+ ..+++++|+.||...
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666777777 56666666777777775 34342 233455555555443
No 262
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=38.58 E-value=91 Score=32.40 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 118 RMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 118 R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+++++-++.+.+.-.++.+|=.+.+.. ..=.++...++|.|++.=..+
T Consensus 143 ~l~elie~~~~~palvIg~PVGFv~Aa-----------esKe~L~~~~iP~itv~G~rG 190 (210)
T COG2082 143 ELLELIEEGGIKPALVIGVPVGFVGAA-----------ESKEALRESPIPYITVRGRRG 190 (210)
T ss_pred HHHHHHHccCCCCcEEEEcCCcccchH-----------HHHHHHHhCCCCeEEEecCCC
Confidence 334444444454445555555554421 222344557799998554443
No 263
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.22 E-value=9.6e+02 Score=30.61 Aligned_cols=184 Identities=20% Similarity=0.265 Sum_probs=111.1
Q ss_pred HHhhHHHHHHHHHcC-cHHHHHHHHHHhccCCCCCCCCC---hHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhc
Q 006153 357 KEVDHEFSEAAKAMG-MQEKFATLRAEFSKGNSRDQLMD---PILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFS 432 (658)
Q Consensus 357 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s 432 (658)
++.++||-+--.+++ +..-+..+.+++..-++.-..|- -.+..++.+...+||..+ .+++++.+++++.-
T Consensus 244 ~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~------~k~~~~~ek~~~~~ 317 (1072)
T KOG0979|consen 244 KKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEAL------AKVQEKFEKLKEIE 317 (1072)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 456777776666654 34455556666555444322222 345567777778887643 56777777777655
Q ss_pred cccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 006153 433 NAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESL 512 (658)
Q Consensus 433 ~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl 512 (658)
... -.+....+.||..=++.-.++-+ .++-+..+++|++.+ ...+.+.+++..++.|..+.=...+.+.
T Consensus 318 ~~v--~~~~~~le~lk~~~~~rq~~i~~---~~k~i~~~q~el~~~------~~~e~~~~~~~ei~~~~~~~~~~~~~~~ 386 (1072)
T KOG0979|consen 318 DEV--EEKKNKLESLKKAAEKRQKRIEK---AKKMILDAQAELQET------EDPENPVEEDQEIMKEVLQKKSSKLRDS 386 (1072)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhc------CCccccchhHHHHHHHHHHHHhhhhhhh
Confidence 322 22334445566666666665543 356677788888776 3445567777777777777777777888
Q ss_pred CcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHH
Q 006153 513 GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKD 561 (658)
Q Consensus 513 ~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~ 561 (658)
+-+.+.-+.+...+.+. .+.+.+...-....++| ...+-+++...
T Consensus 387 ~~~id~~~~~~~~~~~l---~~~kr~~~~~~~~~~~k-~~~~l~~~~~d 431 (1072)
T KOG0979|consen 387 RQEIDAEQLKSQKLRDL---ENKKRKLKQNSDLNRQK-RYRVLRQGSSD 431 (1072)
T ss_pred hhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhhhhh-HHHHhccCchH
Confidence 88877776666666552 23455555556666666 33344443333
No 264
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=38.21 E-value=3.1e+02 Score=25.89 Aligned_cols=73 Identities=34% Similarity=0.273 Sum_probs=43.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH---HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch
Q 006153 482 SFSDLEDDLKEKLVETKKEIESELIDG---LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD 558 (658)
Q Consensus 482 ~~~~l~~~Lkeki~k~k~E~~~~l~~~---~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ 558 (658)
.+.+++..+-+....+...|-..|+.. +..+.+-++|-. -....-+.++.+|...|+ .
T Consensus 32 ~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~-------------~e~e~Y~~~~~~i~~~i~------~ 92 (139)
T PF05615_consen 32 SDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNK-------------RERENYEQLNEEIEQEIE------Q 92 (139)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH------H
Confidence 333344344566666666666666665 222222222111 223456778899999888 4
Q ss_pred hHHHHHHHHHHHHhh
Q 006153 559 LKDMIELLKLEIAKA 573 (658)
Q Consensus 559 ik~kiE~LK~Ev~~a 573 (658)
++..|+.||.++..+
T Consensus 93 ~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 93 AKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578899999988844
No 265
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.18 E-value=1.1e+03 Score=31.38 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccch
Q 006153 397 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLD 439 (658)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~ 439 (658)
|+.++..+..+....=...-.|......+..+++.+..+++++
T Consensus 395 LqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~Sd 437 (1486)
T PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTA 437 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 3344444444444444445567888888889998887665554
No 266
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.05 E-value=79 Score=32.95 Aligned_cols=95 Identities=27% Similarity=0.422 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCC---ChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHH
Q 006153 465 KEKMEAIKAKLQDSGASSFSDL---EDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMEN 541 (658)
Q Consensus 465 kek~~~lk~E~~k~~~s~~~~l---~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~ 541 (658)
+--|.++|.|+..+.-|.+..| ++-||-.|+++|.-+-+++..+.....|++..=+++.++.+- ..+++.+
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~---~~~l~~~--- 173 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESS---SHDLQIK--- 173 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhh---hcchhHh---
Confidence 3345555555554433333333 345788888888888889988866666666555666666553 2233333
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 006153 542 LNEEINKKIEDVINSSDLKDMIELLKLEI 570 (658)
Q Consensus 542 l~~ei~kki~~~~~~~~ik~kiE~LK~Ev 570 (658)
||..||+.-|. .+|--||.-|.|+
T Consensus 174 ---e~s~kId~Ev~--~lk~qi~s~K~qt 197 (220)
T KOG3156|consen 174 ---EISTKIDQEVT--NLKTQIESVKTQT 197 (220)
T ss_pred ---HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 67777775542 3455555555543
No 267
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.81 E-value=3.7e+02 Score=27.37 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=51.0
Q ss_pred HHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCC
Q 006153 407 EFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDL 486 (658)
Q Consensus 407 ~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l 486 (658)
|+-+.++..|+|.-|.+--..+.|-+ +.|+-=.|..|=++|.+..- ++-
T Consensus 19 evfk~vPQ~PHF~pL~~~~e~~REg~----------------------------A~Glm~~f~~l~e~v~~l~i---dd~ 67 (190)
T PF05266_consen 19 EVFKKVPQSPHFSPLQEFKEELREGM----------------------------AVGLMVTFANLAEKVKKLQI---DDS 67 (190)
T ss_pred HHHHcCCCCCCChhhhcCcHHhhhHH----------------------------HHHHHHHHHHHHHHHHHccc---CCc
Confidence 56678888899988765433333211 35666667777777776521 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH--HhhcCcchhHhhhhhHHhhh
Q 006153 487 EDDLKEKLVETKKEIESELIDG--LESLGLDVEVVKSKAKELSE 528 (658)
Q Consensus 487 ~~~Lkeki~k~k~E~~~~l~~~--~~sl~~~~~~~~~~~k~~~~ 528 (658)
...|+.-+... |+..|.+|..+.+|+..|..
T Consensus 68 -----------~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~ 100 (190)
T PF05266_consen 68 -----------RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLS 100 (190)
T ss_pred -----------HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 12444444444 88999999999988877655
No 268
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=37.77 E-value=4.9e+02 Score=30.84 Aligned_cols=208 Identities=13% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHH---HHHHHHHhhHHH----HHHHHHcCcHHH
Q 006153 303 KVNMKKKEGPIASKTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVM---IQKLKKEVDHEF----SEAAKAMGMQEK 375 (658)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~ 375 (658)
++.||...--. +..+|..+++.|+.|+- ..++-.+.++|++| +.-+..+|+.=| .|+-.---.+.+
T Consensus 238 yr~m~~~gY~l----~~~~id~~~~~L~~~l~---~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~ 310 (570)
T COG4477 238 YRDMKEEGYHL----EHVNIDSRLERLKEQLV---ENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEEN 310 (570)
T ss_pred HHHHHHccCCc----ccccHHHHHHHHHHHHH---HHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhcc---------ccccchhHHHHHH
Q 006153 376 FATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSN---------AKSLLDSKNKAAK 446 (658)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~---------~~~~~~~~~~~~~ 446 (658)
+..|..-+-|++. ++-.|++.|+.+++.|--.=..+.-+.++.+.|..+..... ..+-|.+.++.+-
T Consensus 311 ~~~l~~~l~k~ke----~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~ 386 (570)
T COG4477 311 LPILPDYLEKAKE----NNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEE 386 (570)
T ss_pred CcchHHHHHHHHH----HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q ss_pred HHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHh
Q 006153 447 LKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKEL 526 (658)
Q Consensus 447 Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~ 526 (658)
+..=+--==+ +.+.+++.+..||.+=..| ++....++...- -.|+.
T Consensus 387 ~~~~l~~i~~---~q~~~~e~L~~LrkdEl~A------------re~l~~~~~~l~-------------------eikR~ 432 (570)
T COG4477 387 IEKALTDIED---EQEKVQEHLTSLRKDELEA------------RENLERLKSKLH-------------------EIKRY 432 (570)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-------------------HHHHH
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHhhc
Q 006153 527 SEQTSFSNFRSKMENLNEEINKKIEDVIN 555 (658)
Q Consensus 527 ~~~~~~~~~~~k~~~l~~ei~kki~~~~~ 555 (658)
-++...|++-+..-.+...+..+|+++|+
T Consensus 433 mek~nLPGlPe~~l~l~~~~~~~i~~l~~ 461 (570)
T COG4477 433 MEKSNLPGLPETFLSLFFTAGHEIQDLMK 461 (570)
T ss_pred HHHcCCCCCcHHHHHHHHhhhhHHHHHHH
No 269
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.77 E-value=1.5e+02 Score=31.78 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHhhhcC----CcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEE
Q 006153 108 PTPHGYRKALRMMYYADHHG----FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIV 172 (658)
Q Consensus 108 l~p~g~rKa~R~i~lAdk~~----lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVV 172 (658)
-|..+...+.++++.++..+ .=+|+++=.||..-+.. .+. ...+++ +++.+++|+||.|
T Consensus 52 QG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~--~FN-~e~var---ai~~~~~PvisaI 114 (319)
T PF02601_consen 52 QGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW--AFN-DEEVAR---AIAASPIPVISAI 114 (319)
T ss_pred cccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhc--ccC-hHHHHH---HHHhCCCCEEEec
Confidence 34556677788888777655 56788887777542211 111 123444 4456789999844
No 270
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=37.31 E-value=4.3e+02 Score=26.34 Aligned_cols=124 Identities=22% Similarity=0.336 Sum_probs=80.9
Q ss_pred ccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCCh---HHHHHHHHHHHHHHHHHHHHHhhc
Q 006153 436 SLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLED---DLKEKLVETKKEIESELIDGLESL 512 (658)
Q Consensus 436 ~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~---~Lkeki~k~k~E~~~~l~~~~~sl 512 (658)
.+-|.+..|-+.|.|+++|+..|-.+.--... ++++.+ ...||- +...|+++|+++=+.+
T Consensus 8 kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt-----~~mqsa----~~sL~~Ki~ei~~kL~~Fn~dKea~-------- 70 (157)
T PF04778_consen 8 KLTDNDNEIQQAKTELDKEIQKANQAVASNNT-----ASMQSA----KSSLDAKITEITKKLEKFNKDKEAK-------- 70 (157)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHH--------
Confidence 45677888999999999999877654421111 111211 111111 2233444444431111
Q ss_pred CcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHH
Q 006153 513 GLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQI 592 (658)
Q Consensus 513 ~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I 592 (658)
=++.+..+..|.+=|...-++|..-+-|..|...+.+.|.-...-.|+=|++-++..
T Consensus 71 -----------------------F~eLq~tr~~I~eFi~~~K~NpnY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L 127 (157)
T PF04778_consen 71 -----------------------FNELQQTRKQIDEFINKNKNNPNYAELIKKLTQKKDSKNSVTESSNKSDIEAANQEL 127 (157)
T ss_pred -----------------------HHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH
Confidence 114555667777777778889999999999999888888877666688899999999
Q ss_pred HHHHHHH
Q 006153 593 KQRLSEA 599 (658)
Q Consensus 593 ~~~i~~a 599 (658)
++-+..|
T Consensus 128 ~qAL~~A 134 (157)
T PF04778_consen 128 KQALNKA 134 (157)
T ss_pred HHHHHHH
Confidence 9888876
No 271
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=37.07 E-value=1.4e+02 Score=32.03 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.6
Q ss_pred cccCCCCC-HHHHHHHHHHHHHhhhcCCcEEEEecCCCCCC
Q 006153 102 QRNFGMPT-PHGYRKALRMMYYADHHGFPIVTFIDTPGAYA 141 (658)
Q Consensus 102 ~~~gGsl~-p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~ 141 (658)
.++.|+.+ ....+.+.++...|.++|+|+|..+=--|...
T Consensus 117 ~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 117 TVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred EEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcc
Confidence 45667776 66788899999999999999988664444444
No 272
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.83 E-value=7.4e+02 Score=28.89 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHH
Q 006153 603 SELKEKHEELMAEI 616 (658)
Q Consensus 603 s~lk~k~E~Lk~e~ 616 (658)
+.|+.++..++.++
T Consensus 340 ~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 340 SSLEAELNKTRSEL 353 (522)
T ss_pred hhHHHHHHHHHHHH
Confidence 55777777777777
No 273
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=36.65 E-value=3.2e+02 Score=28.97 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHH
Q 006153 469 EAIKAKLQDSGASSFSD-LEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEIN 547 (658)
Q Consensus 469 ~~lk~E~~k~~~s~~~~-l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~ 547 (658)
++||+++.++....... ...++...+.++-.+.+..+..+-..|...-+..... ....-..++..|+..|+
T Consensus 62 ~~lk~~Ye~~~~~~~~~~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~--------~~~~~~~~i~~l~~~I~ 133 (254)
T PF03194_consen 62 EALKAEYEKASKKEKYGGYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKE--------ADEEKAEKIDELDEKIG 133 (254)
T ss_pred HHHHHHHHhCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc--------hhhhHHHHHHHHHHHHH
Confidence 67888888776555444 8889999999999999988888765554433322200 00001346666666666
Q ss_pred HHHHH
Q 006153 548 KKIED 552 (658)
Q Consensus 548 kki~~ 552 (658)
+.+.+
T Consensus 134 ~ll~~ 138 (254)
T PF03194_consen 134 ELLKE 138 (254)
T ss_pred HHHHH
Confidence 66553
No 274
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=36.55 E-value=3e+02 Score=24.45 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCC--hhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 006153 534 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPD--VKSKCKIQALEQQIKQRLSEAVNSSELKEKHEE 611 (658)
Q Consensus 534 ~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~--~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~ 611 (658)
.|-..++.++..|.+ |+..+..|..-...++.+++ +..+.++..+..+|++... .++..+..
T Consensus 5 ~F~~~v~~I~~~I~~----------i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~------~i~~~lk~ 68 (117)
T smart00503 5 EFFEKVEEIRANIQK----------ISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAK------EIRAKLKE 68 (117)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 445555555555543 44555555555566666665 4568888888888877654 46788888
Q ss_pred HHHHHhhc
Q 006153 612 LMAEISDA 619 (658)
Q Consensus 612 Lk~e~a~~ 619 (658)
|.......
T Consensus 69 l~~~~~~~ 76 (117)
T smart00503 69 LEKENLEN 76 (117)
T ss_pred HHHhHHhh
Confidence 87766443
No 275
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=36.41 E-value=1.5e+02 Score=35.20 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccC-CCCCCCCChHHHHHHHHHHHHHhhccCCCC--------Ch
Q 006153 348 LNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKG-NSRDQLMDPILMDKITELKNEFNQGLASAP--------NY 418 (658)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 418 (658)
|..|.++.-.|.|.|.|---...-.+.|..-...=++-. .+-+..+.-+-..-++.++.+|++.+++.| -.
T Consensus 328 L~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~~~~~ 407 (772)
T KOG2203|consen 328 LSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESVADGK 407 (772)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Q ss_pred hhHHHHHHHhhhhccccccchhHHHH-HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHH
Q 006153 419 ASLKYKLDMLKEFSNAKSLLDSKNKA-AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVET 497 (658)
Q Consensus 419 ~~Lk~ki~~~ke~s~~~~~~~~~~~~-~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~ 497 (658)
-++-.|.++-=|.-+.+-..=-+++| +||-+||...++ +.=+-.|+||+..+
T Consensus 408 ~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~---------------------------~lr~akLke~~~~~ 460 (772)
T KOG2203|consen 408 QSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHIS---------------------------SLRTAKLKEKTGLY 460 (772)
T ss_pred HHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhc
Q 006153 498 KKEIESELIDGLESL 512 (658)
Q Consensus 498 k~E~~~~l~~~~~sl 512 (658)
.+-+..+|+++...|
T Consensus 461 e~~l~~else~Ve~l 475 (772)
T KOG2203|consen 461 EKKLVPELSEPVEAL 475 (772)
T ss_pred HhcccHhhhHHHHHH
No 276
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=35.76 E-value=76 Score=32.21 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhh--ccccEEEEEcCce
Q 006153 149 GQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAI--GCANKLLMLENAV 197 (658)
Q Consensus 149 Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlal--g~aD~ViA~p~A~ 197 (658)
|....+-..+......+.|+|++ +|.. ++-++- +.+|+++..|...
T Consensus 120 G~s~~v~~a~~~Ak~~G~~vI~I-T~~~--~s~l~~l~~~~D~~i~ip~~~ 167 (196)
T PRK10886 120 GNSRDIVKAVEAAVTRDMTIVAL-TGYD--GGELAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEE-eCCC--CChhhhccccCCEEEEcCCCc
Confidence 33344555566666679999984 5543 233332 2489999999654
No 277
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=35.65 E-value=1.6e+02 Score=31.76 Aligned_cols=84 Identities=21% Similarity=0.384 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHH
Q 006153 320 EKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMD 399 (658)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (658)
..+..+++.+++++..... .+..|+.-|+|-+.|+++ .+.||.+|+ .+.|..|+
T Consensus 172 ~~~~~~~~~~~~~l~~l~~-----de~~Le~KIekkk~ELER----------~qKRL~sLq-----------~vRPAfmd 225 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLAS-----DEANLEAKIEKKKQELER----------NQKRLQSLQ-----------SVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHHHHHH-----------hcChHHHH
Confidence 4556666677766655332 234577778888877775 356777774 68999999
Q ss_pred HHHHHHHH----HhhccCCCCChhhHHHHHHHhh
Q 006153 400 KITELKNE----FNQGLASAPNYASLKYKLDMLK 429 (658)
Q Consensus 400 ~~~~~~~~----~~~~~~~~~~~~~Lk~ki~~~k 429 (658)
..++|..| |..-+-.--|..-|.+++....
T Consensus 226 EyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~ 259 (267)
T PF10234_consen 226 EYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYN 259 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99987766 4455556667788888887765
No 278
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.60 E-value=7.9e+02 Score=28.86 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=74.3
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCC
Q 006153 401 ITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGA 480 (658)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~ 480 (658)
++-+-+.|..-|-..|||.-+.+.+---= .+---+.+..|+.||.+.+.=|.-.-.++.+-++.+.|++-
T Consensus 234 fdY~~~~Y~~fl~~~~~~~~~e~Elk~~f----~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek------ 303 (622)
T COG5185 234 FDYFTESYKSFLKLEDNYEPSEQELKLGF----EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREK------ 303 (622)
T ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45556677788889999988776553221 11123356666666665544333333334444554444441
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhH
Q 006153 481 SSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLK 560 (658)
Q Consensus 481 s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik 560 (658)
|+.|.-+..++.+-.+.+..+. ...-++++.|+.||.+|=+++ --|+
T Consensus 304 ----------------------------~r~l~~D~nk~~~~~~~mk~K~--~~~~g~l~kl~~eie~kEeei---~~L~ 350 (622)
T COG5185 304 ----------------------------WRALKSDSNKYENYVNAMKQKS--QEWPGKLEKLKSEIELKEEEI---KALQ 350 (622)
T ss_pred ----------------------------HHHHhhhHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHH---HHHH
Confidence 2222222222221111111100 011237888888888887776 4588
Q ss_pred HHHHHHHHHHHhhCCCC
Q 006153 561 DMIELLKLEIAKAGKKP 577 (658)
Q Consensus 561 ~kiE~LK~Ev~~ag~~p 577 (658)
+++..|+..|.+-|.+|
T Consensus 351 ~~~d~L~~q~~kq~Is~ 367 (622)
T COG5185 351 SNIDELHKQLRKQGIST 367 (622)
T ss_pred hhHHHHHHHHHhcCCCH
Confidence 99999999999999876
No 279
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.44 E-value=3.7e+02 Score=27.48 Aligned_cols=36 Identities=33% Similarity=0.511 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHH------HHHHHHcCChhhHHHHHHHHHHHh
Q 006153 582 KCKIQALEQQIK------QRLSEAVNSSELKEKHEELMAEIS 617 (658)
Q Consensus 582 k~kie~l~~~I~------~~i~~a~~ss~lk~k~E~Lk~e~a 617 (658)
.+|+.+|.+.++ +.+..++..+++.++|..|+.|++
T Consensus 92 ~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~ 133 (201)
T KOG4603|consen 92 TEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 445555555443 468889999999999999999985
No 280
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.13 E-value=2.4e+02 Score=30.33 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.0
Q ss_pred HHHHcCChhhHHHHHHH
Q 006153 596 LSEAVNSSELKEKHEEL 612 (658)
Q Consensus 596 i~~a~~ss~lk~k~E~L 612 (658)
|.-+++|-.+.+.|-.+
T Consensus 120 idvil~SkSfsD~IsRv 136 (265)
T COG3883 120 IDVILNSKSFSDLISRV 136 (265)
T ss_pred HHHHHccCcHHHHHHHH
Confidence 44445555555544433
No 281
>PRK11637 AmiB activator; Provisional
Probab=34.89 E-value=6.8e+02 Score=28.07 Aligned_cols=14 Identities=0% Similarity=0.199 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhH
Q 006153 348 LNVMIQKLKKEVDH 361 (658)
Q Consensus 348 ~~~~~~~~~~~~~~ 361 (658)
+.+-++.+++++++
T Consensus 45 ~~~~l~~l~~qi~~ 58 (428)
T PRK11637 45 NRDQLKSIQQDIAA 58 (428)
T ss_pred hHHHHHHHHHHHHH
Confidence 44445555554443
No 282
>PRK11281 hypothetical protein; Provisional
Probab=34.68 E-value=1.1e+03 Score=30.38 Aligned_cols=129 Identities=14% Similarity=0.196 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCChHHHHHHH------HHHHHHhhc-cCCCCChhhH-HHHHHHhhhhccccccchhHHHH
Q 006153 373 QEKFATLRAEFSKGNSRDQLMDPILMDKIT------ELKNEFNQG-LASAPNYASL-KYKLDMLKEFSNAKSLLDSKNKA 444 (658)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~L-k~ki~~~ke~s~~~~~~~~~~~~ 444 (658)
..|+..++..+......+.+++|..+.++. +.+.+|++. |..+++.-.| +.|++.++ .....+...+
T Consensus 169 ~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~-----~~~~~~~~~~ 243 (1113)
T PRK11281 169 SQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLT-----ARIQRLEHQL 243 (1113)
T ss_pred HHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 458888888776655556668886554433 334455543 3333333222 22332222 1122234455
Q ss_pred HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhh
Q 006153 445 AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 520 (658)
Q Consensus 445 ~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~ 520 (658)
+.|+.-||.+-- ++.=..+ +|......+...+-||.+++.. +.|+.||..+...-.+++-+.
T Consensus 244 ~~lq~~in~kr~--------~~se~~~-~~a~~~~~~~~~~~~p~i~~~~-----~~N~~Ls~~L~~~t~~~~~l~ 305 (1113)
T PRK11281 244 QLLQEAINSKRL--------TLSEKTV-QEAQSQDEAARIQANPLVAQEL-----EINLQLSQRLLKATEKLNTLT 305 (1113)
T ss_pred HHHHHHHHHHHH--------HHHHHHH-HHHhhhhhhcccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666332 1111111 1111111122344577777666 568888888776666655554
No 283
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=34.45 E-value=1e+02 Score=31.82 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=10.9
Q ss_pred hcCCCCEEEEEcCCCc
Q 006153 162 FGLKVPIISIVIGEGG 177 (658)
Q Consensus 162 s~a~VPiISVViG~a~ 177 (658)
.+.++|.|++.-..|+
T Consensus 169 ~~~~iP~It~~GrkGG 184 (203)
T PRK05954 169 AQLDVPQIRVEGRKGG 184 (203)
T ss_pred HhCCCCEEEEecCCCc
Confidence 3568999986655543
No 284
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=34.31 E-value=2.6e+02 Score=23.93 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHhhCCCCCh--hhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 559 LKDMIELLKLEIAKAGKKPDV--KSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 559 ik~kiE~LK~Ev~~ag~~p~~--~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
|+.+++.|..--.+.-.+|+. +.+..|+.|..+|++.+. .++..+..|....
T Consensus 19 i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~------~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 19 IKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQ------KIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 455666666555555566664 468889999999998874 4677888887775
No 285
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=34.09 E-value=3.7e+02 Score=26.00 Aligned_cols=87 Identities=29% Similarity=0.420 Sum_probs=51.7
Q ss_pred hHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHH
Q 006153 420 SLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKK 499 (658)
Q Consensus 420 ~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~ 499 (658)
++|.....++.+++.... ....++.|+++++ -|++-+.+||.|+.+- .||+ |+.|+++=
T Consensus 40 ~~~~~~~~lk~~~ki~~~--Qr~~l~~l~~~l~----------~l~~eL~~Lr~~~l~r-----RPLt---k~dVeeLV- 98 (126)
T PF07028_consen 40 SQKKLLEELKNLSKIQES--QRSELKELKQELD----------VLSKELQALRKEYLER-----RPLT---KEDVEELV- 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHc-----CCCC---HHHHHHHH-
Confidence 455555666666543322 1223555555554 3677788888888854 4554 44444332
Q ss_pred HHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHh
Q 006153 500 EIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDV 553 (658)
Q Consensus 500 E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~ 553 (658)
-.++++. .-.....+.|-+|+.++++.|
T Consensus 99 ------------------------~~IseQP--K~IEkQte~LteEL~kkV~~V 126 (126)
T PF07028_consen 99 ------------------------LRISEQP--KFIEKQTEALTEELTKKVDRV 126 (126)
T ss_pred ------------------------HHHHhCc--HHHHHHHHHHHHHHHHHHhcC
Confidence 3345542 355668899999999998764
No 286
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=33.84 E-value=69 Score=37.49 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=52.3
Q ss_pred cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcCceEEEeCHH
Q 006153 126 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPE 204 (658)
Q Consensus 126 ~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~A~i~VmgPE 204 (658)
+|.|-+.+.|-|.+.+...-| .+.+..+..+...++-+|.+-.+|+ +++++|.+.+..++.+...||+
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE-----~AL~~Ai~~~k~rG~~vvviaHRPs------~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGE-----AALAAAILAAKARGGTVVVIAHRPS------ALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred cCCCcEEEecCCCCCcchhHH-----HHHHHHHHHHHHcCCEEEEEecCHH------HHhhcceeeeecCChHHhcCCH
Confidence 688999999999998876545 3456666666666777776666664 4567999999999999999987
No 287
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=33.83 E-value=1.2e+02 Score=26.91 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCC----CCChhhHHHHHHH
Q 006153 372 MQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLAS----APNYASLKYKLDM 427 (658)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Lk~ki~~ 427 (658)
|++.|..|+.|+. ++.++++..+..+..|+++....|.. +.+-++|-.++..
T Consensus 2 L~~~L~~L~~eL~----~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~ 57 (85)
T PF14357_consen 2 LQELLEKLHQELE----QNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNE 57 (85)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 5677888888887 45567788888888888888777766 2334455554444
No 288
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=33.78 E-value=1.4e+02 Score=30.34 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHh
Q 006153 447 LKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKEL 526 (658)
Q Consensus 447 Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~ 526 (658)
|..=+.+-+.-++++-.+|-.++.+|.++. -.+.+-|++-+.--|+|+..++..|.
T Consensus 63 f~nll~~a~k~~~~a~~~Kse~~~~r~~L~------------------l~FI~sf~~Y~~leL~s~~~ei~~L~------ 118 (181)
T PF04645_consen 63 FNNLLLQAFKSNAEARNAKSELEMERSNLE------------------LSFIDSFNQYKNLELKSIKKEIEILR------ 118 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHh------------------hHHHHHHHHhhhhhHHHHHHHHHHHH------
Confidence 444455666666666666666666666544 23555566555544666665555444
Q ss_pred hhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 006153 527 SEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIA 571 (658)
Q Consensus 527 ~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~ 571 (658)
.||..|+.+||++=+.+ +++.++-||.|+.
T Consensus 119 ----------~kI~~L~~~in~~~k~~-----~n~~i~slk~EL~ 148 (181)
T PF04645_consen 119 ----------LKISSLQKEINKNKKKD-----LNEEIESLKSELN 148 (181)
T ss_pred ----------HHHHHHHHHhhhhhhhh-----hhhhHHHHHHHHH
Confidence 47777777777765533 4455666666554
No 289
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.77 E-value=41 Score=34.42 Aligned_cols=96 Identities=26% Similarity=0.424 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEE-ecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEE
Q 006153 113 YRKALRMMYYADHHGFPIVTF-IDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLL 191 (658)
Q Consensus 113 ~rKa~R~i~lAdk~~lPIV~L-iDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~Vi 191 (658)
+...+|....|-.-+-||+.+ +|+||... + ..+.+..++. .+| +|+|+++-||.|.+|.-.
T Consensus 90 gdRlars~~~a~~~~~~VliIg~DcP~lt~----e------lLa~a~taL~--~~p---aVLGpa~dGGy~llgLrr--- 151 (211)
T COG3222 90 GDRLARSHVDAFDGSYPVLIIGMDCPGLTA----E------LLADAFTALL--QIP---AVLGPAFDGGYYLLGLRR--- 151 (211)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCCccCH----H------HHHHHHHHHh--cCc---ceecccccCcEEEEEeec---
Confidence 344555554444444787766 89999751 2 2334444443 345 579999999999887644
Q ss_pred EEcCceEEEeCHHHHHHHhhhhccCchHHHHhhcccHHHHHHcCCceeeec
Q 006153 192 MLENAVFYVASPEACAAILWKSAKASPKAAEKLKITGSELCKLQIADGVIP 242 (658)
Q Consensus 192 A~p~A~i~VmgPEgaAsIl~rd~~~~~eAaE~~kitA~dL~~~GlVD~IIp 242 (658)
..|+-..+|=|.... .+.+|-+-+.+.|+-...+|
T Consensus 152 ---------~~pe~fe~ipwg~~~-------v~~lTl~~lrqng~~~~llp 186 (211)
T COG3222 152 ---------FAPELFEAIPWGTPD-------VLELTLKALRQNGIDVYLLP 186 (211)
T ss_pred ---------cCHHHHhcCCCCCch-------HHHHHHHHHHHcCCcccccC
Confidence 246666666554322 12345555666776555554
No 290
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.68 E-value=2e+02 Score=31.19 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=55.9
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHH
Q 006153 318 SKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPIL 397 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (658)
..-+|..++++++-|+--++. -+..|.+-|++-|.|..+ +..||++| |.+.|..
T Consensus 113 aIq~i~~~~q~~~~~Lnnvas-----dea~L~~Kierrk~ElEr----------~rkRle~L-----------qsiRP~~ 166 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVAS-----DEAALGSKIERRKAELER----------TRKRLEAL-----------QSIRPAH 166 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH----------HHHHHHHH-----------HhcchHH
Confidence 334556666666665544431 234556666666666543 34455554 6788999
Q ss_pred HHHHHHH----HHHHhhccCCCCChhhHHHHHHHhhhhc
Q 006153 398 MDKITEL----KNEFNQGLASAPNYASLKYKLDMLKEFS 432 (658)
Q Consensus 398 ~~~~~~~----~~~~~~~~~~~~~~~~Lk~ki~~~ke~s 432 (658)
|+..++. +.-|..-+-.--|.--||+|++..-.++
T Consensus 167 MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse 205 (338)
T KOG3647|consen 167 MDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSE 205 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 9887654 4445556666678888999998877544
No 291
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=1.5e+02 Score=33.99 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=13.5
Q ss_pred CCCCEEEEEcCCCchhhhhhh
Q 006153 164 LKVPIISIVIGEGGSGGALAI 184 (658)
Q Consensus 164 a~VPiISVViG~a~GGGAlal 184 (658)
.+--+|+=+-|.+=||||+.+
T Consensus 242 vg~vIlTKlDGhakGGgAlSa 262 (483)
T KOG0780|consen 242 VGAVILTKLDGHAKGGGALSA 262 (483)
T ss_pred cceEEEEecccCCCCCceeee
Confidence 344455555588888888754
No 292
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.36 E-value=2.4e+02 Score=31.71 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 110 PHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 110 p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
..+...+.++++.++..+.=+|.++=.||
T Consensus 175 ~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 175 EGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred ccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 34445555555555554444555555444
No 293
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.13 E-value=1.1e+03 Score=29.67 Aligned_cols=116 Identities=25% Similarity=0.272 Sum_probs=66.5
Q ss_pred HHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhh--
Q 006153 504 ELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKS-- 581 (658)
Q Consensus 504 ~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~-- 581 (658)
.+-.-..++.+..+-++...+++.- ..++|++++...+.+. +-++.-++.||.+.-+....-+.-+
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~---------e~eeL~~~vq~~~s~h---sql~~q~~~Lk~qLg~~~~~~~~~~q~ 728 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQV---------ENEELEEEVQDFISEH---SQLKDQLDLLKNQLGIISSKQRDLLQG 728 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccccchhhHHhH
Confidence 3334455666777766655555544 5667777777777655 6799999999998874433111000
Q ss_pred -------HHHHHHHHHHHHHHHHHHcCC-hhh---HHHHHHHHHHHhhccCCCCCCCCCcc
Q 006153 582 -------KCKIQALEQQIKQRLSEAVNS-SEL---KEKHEELMAEISDATKSPGGLDGGVN 631 (658)
Q Consensus 582 -------k~kie~l~~~I~~~i~~a~~s-s~l---k~k~E~Lk~e~a~~~~~~~~~~~s~~ 631 (658)
-+-+.++..+++.-+.+-..+ .+| +..+|..|...-.|...-++..+++.
T Consensus 729 ~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~ 789 (970)
T KOG0946|consen 729 AEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLG 789 (970)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhh
Confidence 111444445555444333333 235 66777777777555555555555443
No 294
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=32.12 E-value=4.6e+02 Score=25.07 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 006153 580 KSKCKIQALEQQIKQRLS 597 (658)
Q Consensus 580 ~~k~kie~l~~~I~~~i~ 597 (658)
+.+.-|..|..+|.++|.
T Consensus 122 ~l~~qv~~~~~~~~~~~~ 139 (141)
T PRK08476 122 QLLSQMPEFKEALNAKLS 139 (141)
T ss_pred HHHHhHHHHHHHHHHHhh
Confidence 445667777777777764
No 295
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.99 E-value=71 Score=32.16 Aligned_cols=59 Identities=22% Similarity=0.456 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Q 006153 500 EIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIA 571 (658)
Q Consensus 500 E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~-ik~kiE~LK~Ev~ 571 (658)
-+.++|+..|..|...|+..+ + +++.+|..|+.+|.. +|++.+... ||+|...|..|+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~---~---------eL~~eI~~L~~~i~~-le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTK---N---------ELEDEIKQLEKEIQR-LEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp --------HHHHHHHHHHHHH---H---------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---H---------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777666 2 233366777777754 677766665 7888777777665
No 296
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.96 E-value=2.1e+02 Score=32.40 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhcC-CcEEEEecCCCC
Q 006153 111 HGYRKALRMMYYADHHG-FPIVTFIDTPGA 139 (658)
Q Consensus 111 ~g~rKa~R~i~lAdk~~-lPIV~LiDTpGa 139 (658)
.+..-++++++.++..+ .=+|+++=.||.
T Consensus 170 ~a~~~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 170 GAVQSIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred cHHHHHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 33444455555444332 345555544443
No 297
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.90 E-value=5.7e+02 Score=26.09 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhccCCC-CChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHh
Q 006153 400 KITELKNEFNQGLASA-PNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQ 476 (658)
Q Consensus 400 ~~~~~~~~~~~~~~~~-~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~ 476 (658)
.+..+|+-||.-...- -=..+||.+|..++. .....+++-.||.++-. .|.+-+..++.|+.
T Consensus 10 af~~iK~YYndIT~~NL~lIksLKeei~emkk---------~e~~~~k~m~ei~~eN~------~L~epL~~a~~e~~ 72 (201)
T PF13851_consen 10 AFQEIKNYYNDITLNNLELIKSLKEEIAEMKK---------KEERNEKLMAEISQENK------RLSEPLKKAEEEVE 72 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHH
Confidence 4555666665432211 113567777777762 12233445566666654 56667777776665
No 298
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=31.70 E-value=4.6e+02 Score=28.31 Aligned_cols=19 Identities=32% Similarity=0.027 Sum_probs=15.1
Q ss_pred CcEEEEecCCCCCCChhHH
Q 006153 128 FPIVTFIDTPGAYADLKSE 146 (658)
Q Consensus 128 lPIV~LiDTpGa~~g~~aE 146 (658)
.-+|++-||.++-+|...+
T Consensus 31 e~~iY~~D~a~~PYG~ks~ 49 (269)
T COG0796 31 EDIIYVGDTARFPYGEKSE 49 (269)
T ss_pred CcEEEEecCCCCCCCCCCH
Confidence 3499999999998886544
No 299
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=31.57 E-value=62 Score=33.30 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred cCCcEEEEecCCCCCCChhHHHh
Q 006153 126 HGFPIVTFIDTPGAYADLKSEEL 148 (658)
Q Consensus 126 ~~lPIV~LiDTpGa~~g~~aE~~ 148 (658)
.++|+++|.||.|-+.|...+..
T Consensus 2 rRlP~~lllDtSgSM~Ge~Ieal 24 (207)
T COG4245 2 RRLPCYLLLDTSGSMIGEPIEAL 24 (207)
T ss_pred CCCCEEEEEecCcccccccHHHH
Confidence 46899999999999999887764
No 300
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.49 E-value=1.5e+02 Score=35.42 Aligned_cols=44 Identities=18% Similarity=0.459 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 006153 437 LLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 502 (658)
Q Consensus 437 ~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~ 502 (658)
...+.+++++|+.|+. .|+..++.++.|+. .|+.+++.++++..
T Consensus 424 i~~~~~~ve~l~~e~~----------~L~~~~ee~k~eie------------~L~~~l~~~~r~~~ 467 (652)
T COG2433 424 IKKLEETVERLEEENS----------ELKRELEELKREIE------------KLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 3445666777777653 35555556665554 24555555555544
No 301
>PF13166 AAA_13: AAA domain
Probab=31.43 E-value=9.4e+02 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 006153 582 KCKIQALEQQIKQRLSEAVNSSELKEKHEELM 613 (658)
Q Consensus 582 k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk 613 (658)
+..+.+++++|++--....+.....+.|...-
T Consensus 437 ~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L 468 (712)
T PF13166_consen 437 KEEIKKIEKEIKELEAQLKNTEPAADRINEEL 468 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55666677776665555555555555444433
No 302
>PRK11637 AmiB activator; Provisional
Probab=31.21 E-value=7.9e+02 Score=27.55 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 006153 490 LKEKLVETKKEIESELIDGLES 511 (658)
Q Consensus 490 Lkeki~k~k~E~~~~l~~~~~s 511 (658)
+.++|.+.++.+...+...|++
T Consensus 115 ~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 115 LEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4677777777788777777774
No 303
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.19 E-value=2.2e+02 Score=25.79 Aligned_cols=66 Identities=27% Similarity=0.444 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHH
Q 006153 534 NFRSKMENLNEEINKKIEDVIN------SSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKE 607 (658)
Q Consensus 534 ~~~~k~~~l~~ei~kki~~~~~------~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~ 607 (658)
+++.+++...+|+++.++.|.+ ++.=-.||-+||--- ..-..++|..|+.+++. |..
T Consensus 1 ~l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksY-------e~rwek~v~~L~~e~~~----------l~~ 63 (87)
T PF12709_consen 1 DLKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSY-------EARWEKKVDELENENKA----------LKR 63 (87)
T ss_pred CHHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHH----------HHH
Confidence 3567888999999999999987 344445667776311 12356778877777754 444
Q ss_pred HHHHHHHHH
Q 006153 608 KHEELMAEI 616 (658)
Q Consensus 608 k~E~Lk~e~ 616 (658)
.+|.|+.++
T Consensus 64 E~e~L~~~l 72 (87)
T PF12709_consen 64 ENEQLKKKL 72 (87)
T ss_pred HHHHHHHHH
Confidence 455555544
No 304
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=30.09 E-value=1.4e+02 Score=31.13 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=10.5
Q ss_pred cCCCCEEEEEcCCCc
Q 006153 163 GLKVPIISIVIGEGG 177 (658)
Q Consensus 163 ~a~VPiISVViG~a~ 177 (658)
..++|.|++.-..|+
T Consensus 181 ~~~iP~It~~GrkGG 195 (214)
T PRK08286 181 ESDLPAIAALGRKGG 195 (214)
T ss_pred hCCCCEEEEecCCCc
Confidence 468999986655543
No 305
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=30.09 E-value=17 Score=43.44 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHh---
Q 006153 443 KAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVV--- 519 (658)
Q Consensus 443 ~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~--- 519 (658)
.+.+|+++++.=+..|=.+-.++|-|..||.+-.++ .| |...+.+.+-|++-+
T Consensus 275 ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~----------------~k--------lE~~ve~YKkKLed~~~l 330 (713)
T PF05622_consen 275 EIDELRQENEELQAEAREARALRDELDELREKADRA----------------DK--------LENEVEKYKKKLEDLEDL 330 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HH--------HHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666644443 11 122233333343333
Q ss_pred hhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCC
Q 006153 520 KSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGK 575 (658)
Q Consensus 520 ~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~ 575 (658)
+.+++.|-++|. .+......|.++..+ .+.++..++.+|.+|..--.
T Consensus 331 k~qvk~Lee~N~--~l~e~~~~LEeel~~-------~~~~~~qle~~k~qi~eLe~ 377 (713)
T PF05622_consen 331 KRQVKELEEDNA--VLLETKAMLEEELKK-------ARALKSQLEEYKKQIQELEQ 377 (713)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH
Confidence 355666666543 444444444444421 23467777777777765444
No 306
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=29.90 E-value=1.3e+02 Score=31.03 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=10.5
Q ss_pred hcCCCCEEEEEcCCC
Q 006153 162 FGLKVPIISIVIGEG 176 (658)
Q Consensus 162 s~a~VPiISVViG~a 176 (658)
.+.++|.|++.-..|
T Consensus 174 ~~~~vP~It~~G~kG 188 (204)
T PRK05575 174 EKLDIPYITVRGRKG 188 (204)
T ss_pred HhCCCCEEEEecCCC
Confidence 446899998665554
No 307
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.80 E-value=1.3e+03 Score=29.62 Aligned_cols=247 Identities=25% Similarity=0.342 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCCC--chHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHH
Q 006153 320 EKLEDEVEKLKQQILKAKESSTKPP--DAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPIL 397 (658)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (658)
..+..|+++-+..|..-.++..+.. -..+++-|+++....|.|...++++ |++.+..++.+..+..+.-..+.-.|
T Consensus 247 ~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~--L~~~~~~~~~~~tr~~t~l~~~~~tl 324 (1174)
T KOG0933|consen 247 KNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKA--LEDKLDSLQNEITREETSLNLKKETL 324 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766666654322 2346778889999999999888854 78999999988887644311111111
Q ss_pred ---HHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHH
Q 006153 398 ---MDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAK 474 (658)
Q Consensus 398 ---~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E 474 (658)
.++++++ +.+ ...++.++. .|+.-=.+.. +-.+++++. .++++. -|+.-+..
T Consensus 325 ~~e~~k~e~i----~~~------i~e~~~~l~-~k~~~~~~~~----~~~~~~ke~-~~~~s~---------~~e~~e~~ 379 (1174)
T KOG0933|consen 325 NGEEEKLEEI----RKN------IEEDRKKLK-EKEKAMAKVE----EGYEKLKEA-FQEDSK---------LLEKAEEL 379 (1174)
T ss_pred hhhHHHHHHH----HHh------HHHHHHHHH-HHHHHHhhhh----hhHHHHHHH-HHHHHH---------HHHHHHHH
Confidence 1122211 111 111211111 1111001100 111223322 233332 23333333
Q ss_pred Hh--hcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 006153 475 LQ--DSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIED 552 (658)
Q Consensus 475 ~~--k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~ 552 (658)
++ .+|.|++.+=+-.|-+.+...|..+. .++...+-..++++-++ +++....+ +..+.-++--+-+++
T Consensus 380 ~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~-~~~t~~k~a~~k~e~~~---~elk~~e~------e~~t~~~~~~~~~~~ 449 (1174)
T KOG0933|consen 380 VESLTAGLSSNEDEEKTLEDQLRDAKITLS-EASTEIKQAKLKLEHLR---KELKLREG------ELATASAEYVKDIEE 449 (1174)
T ss_pred HHHHhcccccCccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHhhhh------HhhhhhHHHHHHHHH
Confidence 33 34677777777788888888888865 35555777777777777 33333222 444444444444443
Q ss_pred hhccchhHHHHHHHHHHHHhhCCCCC--hhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 553 VINSSDLKDMIELLKLEIAKAGKKPD--VKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 553 ~~~~~~ik~kiE~LK~Ev~~ag~~p~--~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
+ --+++-+|.|+.....-|..++ ..++++-..|-+.| ..||++.+.|+.-+
T Consensus 450 l---d~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~----------~~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 450 L---DALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDI----------GRLKDELDRLLARL 502 (1174)
T ss_pred H---HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhh
Confidence 3 2377888999999888888664 33344444443333 34888888888877
No 308
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=29.56 E-value=49 Score=33.25 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEECCeEEEEEeeecCCCccccccccCCCCCHHHHHHHHHHHHHhhhcCCcEEEEecCCC
Q 006153 77 GIGSMDGRTYMFMGHQKGRNTKENIQRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 77 G~GrI~GrpV~VIa~d~~~~~~e~~~~~gGsl~p~g~rKa~R~i~lAdk~~lPIV~LiDTpG 138 (658)
|+-.....|-.||..++. +=..++..|.+.|+|+|.++||..
T Consensus 120 g~~~~~~~Pdlviv~~~~--------------------~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 120 GIKDMFRLPDLVIVLDPR--------------------KEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cccccccCCCEEEEeCCc--------------------cchHHHHHHHHcCCCEEEEecCCC
Confidence 444455667777777764 223678899999999999999973
No 309
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.47 E-value=2.6e+02 Score=28.81 Aligned_cols=19 Identities=5% Similarity=0.399 Sum_probs=12.3
Q ss_pred cCcchHHHHHHHHHHHhhc
Q 006153 460 CRPDIKEKMEAIKAKLQDS 478 (658)
Q Consensus 460 ~~~~lkek~~~lk~E~~k~ 478 (658)
..|.+++++..|+.|+.+.
T Consensus 87 ~~p~~~~rlp~le~el~~l 105 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTL 105 (206)
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 4566777777777766643
No 310
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=29.16 E-value=2.9e+02 Score=29.33 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=24.7
Q ss_pred cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCch
Q 006153 126 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGS 178 (658)
Q Consensus 126 ~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~G 178 (658)
.+.++|+++.=+++..|.-.| .+...+....|+|.||...++|
T Consensus 125 ~~~~vv~~~GDGa~~~g~~~E----------~l~~A~~~~lPvi~vv~NN~~~ 167 (293)
T cd02000 125 EDRVAVCFFGDGATNEGDFHE----------ALNFAALWKLPVIFVCENNGYA 167 (293)
T ss_pred CCCEEEEEeCCCccccchHHH----------HHHHHHhhCCCEEEEEeeCCee
Confidence 355677777655554443222 2222234567999999877554
No 311
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.16 E-value=7.5e+02 Score=27.11 Aligned_cols=51 Identities=27% Similarity=0.418 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhcc
Q 006153 559 LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEISDAT 620 (658)
Q Consensus 559 ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~ 620 (658)
+|+++..+..|+. ..+++++.+++|..+. ...|+ ..+++..++..+|+++.
T Consensus 209 lk~~l~~~~~ei~--------~~~~~l~e~~~~l~~l-~~~I~--~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 209 AKEKLKKLLQEIM--------IKVKKLEELEEELQEL-ESKIE--DLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHH
Confidence 5566666666555 3355666666655432 22222 45666667777776663
No 312
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.07 E-value=3.1e+02 Score=26.95 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=48.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccchhHH
Q 006153 482 SFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSDLKD 561 (658)
Q Consensus 482 ~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~ik~ 561 (658)
....|+|+=..++.++.++|.......=..|--|-.-|+ .|.. +++ .=.+||..|.+||..=-. .|-+
T Consensus 40 ~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELn----ALl~-~~~-pD~~kI~aL~kEI~~Lr~------kL~e 107 (143)
T PRK11546 40 NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYN----ALLT-ANP-PDSSKINAVAKEMENLRQ------SLDE 107 (143)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHc-CCC-CCHHHHHHHHHHHHHHHH------HHHH
Confidence 355799999999999999999887766444433333222 2222 111 224467777777743211 2222
Q ss_pred HHHHHHHHHHhhCC
Q 006153 562 MIELLKLEIAKAGK 575 (658)
Q Consensus 562 kiE~LK~Ev~~ag~ 575 (658)
+--.+-.|++|.|.
T Consensus 108 ~r~~~~~~~~k~Gv 121 (143)
T PRK11546 108 LRVKRDIAMAEAGI 121 (143)
T ss_pred HHHHHHHHHHHcCC
Confidence 23356677777775
No 313
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=29.07 E-value=77 Score=29.38 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhh
Q 006153 394 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKE 430 (658)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke 430 (658)
.|.+|+-|-+++++|..-=+--|.|.++-||+.|+.-
T Consensus 35 S~~~KD~I~q~m~~F~dp~~G~pAF~s~~QQ~~mlq~ 71 (120)
T PRK15321 35 SETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQN 71 (120)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHH
Confidence 5789999999999999888899999999999998763
No 314
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=28.13 E-value=8.2e+02 Score=26.74 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 006153 347 ALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYKLD 426 (658)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~ 426 (658)
-++..+.+|. +-+++...++.+|+|..-|..+.. + .+.|.|.++.+.++. .+-..+|.+-+.
T Consensus 18 lv~~~~~~l~-~~~~~l~~~L~slnLP~sl~~l~~-----~----~lP~sl~~~~~~i~~--------~gg~~~l~~~l~ 79 (339)
T cd09235 18 LVNREIGKLR-EATQLLNGVLASLNLPAAIEDVSG-----D----TVPQSLLEKSRTVIE--------KGGIQTIDQLIK 79 (339)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHhcC-----C----CCCHHHHHHHHHHHh--------CCChHHHHHHHH
Confidence 3555676665 788899999999999999986632 1 389999999996662 245666666666
Q ss_pred Hhhhh
Q 006153 427 MLKEF 431 (658)
Q Consensus 427 ~~ke~ 431 (658)
.+.+.
T Consensus 80 ~L~~l 84 (339)
T cd09235 80 ELPEL 84 (339)
T ss_pred HHHHH
Confidence 55543
No 315
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=28.11 E-value=9.8e+02 Score=27.61 Aligned_cols=103 Identities=19% Similarity=0.373 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHHH----------HHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhcc
Q 006153 487 EDDLKEKLVETKKE----------IESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINS 556 (658)
Q Consensus 487 ~~~Lkeki~k~k~E----------~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~ 556 (658)
+......|..++.| |...+..-+.++.-++..++ .++-.++...-+.-++.=+.+++..-+.++..
T Consensus 150 ~~~~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k----~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltk 225 (426)
T smart00806 150 NKEQRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFK----SSSLSASGSSNRAYVESSKKKLSEDSDSLLTK 225 (426)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhccCCCcchHHHHHhHHHHHHHHHHHHHH
Confidence 34445666655555 34444444555544554444 33233333455667788888888888888875
Q ss_pred c-hhHHHHHHHHHHHHhhCCCCChhh----HHHHHHHHHHHH
Q 006153 557 S-DLKDMIELLKLEIAKAGKKPDVKS----KCKIQALEQQIK 593 (658)
Q Consensus 557 ~-~ik~kiE~LK~Ev~~ag~~p~~~~----k~kie~l~~~I~ 593 (658)
- ||..-||.|+.-|+.-|..|.+.- .+=|..++++++
T Consensus 226 VDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~ 267 (426)
T smart00806 226 VDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELK 267 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5 599999999999999999996542 223555555554
No 316
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=27.98 E-value=7.5e+02 Score=29.79 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=23.0
Q ss_pred CChhhhHHHHHHHHHHHHHhhhcCCCC
Q 006153 317 TSKEKLEDEVEKLKQQILKAKESSTKP 343 (658)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (658)
.....++-|++.|+.|..+++.+...-
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 466789999999999999999887644
No 317
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=27.72 E-value=1.6e+02 Score=30.58 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=11.4
Q ss_pred hcCCCCEEEEEcCCCch
Q 006153 162 FGLKVPIISIVIGEGGS 178 (658)
Q Consensus 162 s~a~VPiISVViG~a~G 178 (658)
.+.++|.|++.-.++++
T Consensus 175 ~~~~vP~It~~GrkGGS 191 (210)
T PRK06264 175 RNTNIPSISTIGPKGGT 191 (210)
T ss_pred HhCCCCEEEEecCCCcH
Confidence 35689999866555433
No 318
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.56 E-value=1.7e+02 Score=30.07 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 006153 606 KEKHEELMAE 615 (658)
Q Consensus 606 k~k~E~Lk~e 615 (658)
+.+.+.|+.+
T Consensus 152 ~~~~~~l~~~ 161 (206)
T PRK10884 152 QKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 319
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=27.51 E-value=1.4e+02 Score=30.22 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=28.8
Q ss_pred hhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhH
Q 006153 418 YASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFE 456 (658)
Q Consensus 418 ~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ 456 (658)
...|.-||.+|..-++.....++|+.++-||.|+|..+.
T Consensus 114 i~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iK 152 (181)
T PF04645_consen 114 IEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIK 152 (181)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 345777788887777777777777777778888776665
No 320
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=27.30 E-value=6.7e+02 Score=30.64 Aligned_cols=155 Identities=26% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHhhcCcch----HHHHHHHHH-----HHhhcCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHh
Q 006153 441 KNKAAKLKQEINKKFEEVICRPDI----KEKMEAIKA-----KLQDSGASSFSDLE-DDLKEKLVETKKEIESELIDGLE 510 (658)
Q Consensus 441 ~~~~~~Lk~Ei~~~~~ea~~~~~l----kek~~~lk~-----E~~k~~~s~~~~l~-~~Lkeki~k~k~E~~~~l~~~~~ 510 (658)
.+.+..+.+++...|.+....-++ .+.+..+.. .++.. -++.-+++ ..-|.++.+.-+- ..+|..++.
T Consensus 119 ~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~-ia~~L~l~~~~eKQ~LLE~~d~-~~RL~~l~~ 196 (775)
T TIGR00763 119 DEEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADF-VAASLQLKEKDELQEVLETVNI-EKRLKKALE 196 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHH-HHHhcCCCcHHHHHHHHhcCCH-HHHHHHHHH
Q ss_pred hcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHhhCCCCChhhHHHHH
Q 006153 511 SLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD----LKDMIELLKLEIAKAGKKPDVKSKCKIQ 586 (658)
Q Consensus 511 sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~----ik~kiE~LK~Ev~~ag~~p~~~~k~kie 586 (658)
-|..+++.++ ++++|++++++=|+..- |+++|.+++.|+ |...|.+ +
T Consensus 197 lL~~ele~l~---------------------l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eL---g~~~~~~-----~ 247 (775)
T TIGR00763 197 LLKKELELLK---------------------LQNKITKKVEEKMEKTQREYYLREQLKAIKKEL---GIEKDDK-----D 247 (775)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCCch-----h
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHhhccCCCCCCC
Q 006153 587 ALEQQIKQRLSEAVNSSELKEKHEELMAEISDATKSPGGLD 627 (658)
Q Consensus 587 ~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~a~~~~~~~~~~ 627 (658)
.+ ++++++|+.+==+.+.+++++.-...+..-...+.+.+
T Consensus 248 ~~-~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 287 (775)
T TIGR00763 248 EL-EKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFT 287 (775)
T ss_pred HH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHH
No 321
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.12 E-value=6.6e+02 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHHHHhhCC
Q 006153 538 KMENLNEEINKKIEDVINSS------DLKDMIELLKLEIAKAGK 575 (658)
Q Consensus 538 k~~~l~~ei~kki~~~~~~~------~ik~kiE~LK~Ev~~ag~ 575 (658)
++..|..||+.-.+..++++ +--++++.|+.|++..-.
T Consensus 54 ~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~ 97 (593)
T PF06248_consen 54 RSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQ 97 (593)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555544433 233445666666664433
No 322
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.07 E-value=5.7e+02 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 006153 463 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELI 506 (658)
Q Consensus 463 ~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~ 506 (658)
-++.+|..++.++... +...+.++.+++.-|.
T Consensus 17 C~~~~L~~~~~~l~~~------------~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 17 CVNNRLLELRSELQQL------------KEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 3556788888887754 5566666666666665
No 323
>PRK05953 precorrin-8X methylmutase; Validated
Probab=26.94 E-value=1.5e+02 Score=30.70 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=9.9
Q ss_pred hcCCCCEEEEEcCCC
Q 006153 162 FGLKVPIISIVIGEG 176 (658)
Q Consensus 162 s~a~VPiISVViG~a 176 (658)
...++|.|++.=..+
T Consensus 167 ~~~~vP~It~~GrkG 181 (208)
T PRK05953 167 QDSLVPHITIDGRKG 181 (208)
T ss_pred HhCCCCEEEEeCCCC
Confidence 356799998555553
No 324
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.78 E-value=4.6e+02 Score=32.36 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcCC------CCCchHHHHHHHHHHH---HhhHHHHHHHHHc---------CcHHHHHHHHHHhc
Q 006153 323 EDEVEKLKQQILKAKESST------KPPDAALNVMIQKLKK---EVDHEFSEAAKAM---------GMQEKFATLRAEFS 384 (658)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 384 (658)
|.|+.-||+|+-.+--.-. ..-+-+|++-..+|.. |.+|-+.+|+... .|+.+|..+..++.
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHhhccCCCCCh--------------hhHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 006153 385 KGNSRDQLMDPILMDKITELKNEFNQGLASAPNY--------------ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQE 450 (658)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~E 450 (658)
++.+.|.-+...|-+|=.-|.+==.++-.+--++ .+|||.+.++. +.=.|-...+|
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~----------keleir~~E~~ 172 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS----------KELEIRNEERE 172 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Q ss_pred HHHHhHHhhcCcchH--HHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH--HhhcCcchhHh
Q 006153 451 INKKFEEVICRPDIK--EKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG--LESLGLDVEVV 519 (658)
Q Consensus 451 i~~~~~ea~~~~~lk--ek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~--~~sl~~~~~~~ 519 (658)
.+.+.-++...--+. .|+.+|.+|++ +|+-=+..+|..+ +..|+++|+++
T Consensus 173 ~~~~~ae~a~kqhle~vkkiakLEaEC~-------------------rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 173 YSRRAAEAASKQHLESVKKIAKLEAECQ-------------------RLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhccCCChHHHHHhHHHHHHh
No 325
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.77 E-value=3.5e+02 Score=31.03 Aligned_cols=149 Identities=19% Similarity=0.244 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q 006153 345 DAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITELKNEFNQGLASAPNYASLKYK 424 (658)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~k 424 (658)
+.+|+.|+++|..|.. -.--+||++-.+| .+++.||- | |-+++-|.+
T Consensus 60 NEdLk~~~e~lr~~~~---~d~~~am~~v~~L------------e~~~~npk---------------~---~~~E~~k~~ 106 (580)
T KOG3705|consen 60 NEDLKSILEKLRQERN---DDHKKAMEQVHQL------------EPNPENPK---------------L---PKPEPVKEI 106 (580)
T ss_pred hHHHHHHHHHHhcccc---cchhhHHHHHhhC------------CCCcCCcC---------------c---CCCCchHHH
Confidence 4578899999988863 1234667665554 35666665 2 333334444
Q ss_pred HHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHH
Q 006153 425 LDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESE 504 (658)
Q Consensus 425 i~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~ 504 (658)
|. .+..+. ++|+||..-+..-+++|=+--|..|+-|.++.... +|.+-+. +|=.+
T Consensus 107 ~r-------~~n~lg----------~~dhE~~rRri~~~i~E~w~fl~Sel~kvr~~~~~----dl~e~~~----~~LL~ 161 (580)
T KOG3705|consen 107 IR-------KPNILG----------PVDHEVQRRRIDDRIREMWYFLHSELGKVRKAASA----DLIENST----KILLE 161 (580)
T ss_pred hc-------CCccCC----------CccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh----hHHhhHH----HHHHh
Confidence 43 232322 15566666666678888888889998887765433 3444444 45555
Q ss_pred HHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccc
Q 006153 505 LIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSS 557 (658)
Q Consensus 505 l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~ 557 (658)
+++--.||.-+...|. -+| ++..--.++...|-+=+.++|+-+-|-.
T Consensus 162 ~~~h~rSlm~d~~~l~-----q~d-G~e~wR~Kea~dlt~lvqrri~~LQNPk 208 (580)
T KOG3705|consen 162 TAEHMRSLMGDSAQLE-----QLD-GSEEWRFKEATDLTQLVQRRIEKLQNPK 208 (580)
T ss_pred hHHHHHHHHhHHHHHH-----hcc-CcHHHHHhHHhHHHHHHHHHHHHhcChH
Confidence 5555666655555444 011 1111112233446666777777665543
No 326
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=72 Score=37.16 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCcEEEEecCCCCCCChhHHHh----------------chHHHHHHHHHHHhcCCCCEEEEEcC
Q 006153 127 GFPIVTFIDTPGAYADLKSEEL----------------GQGEAIAHNLRTMFGLKVPIISIVIG 174 (658)
Q Consensus 127 ~lPIV~LiDTpGa~~g~~aE~~----------------Gq~~aiA~~l~als~a~VPiISVViG 174 (658)
+.|-|+|+||||-..=..+..+ |.....-..+..+..++||+|..++-
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNK 116 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINK 116 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEec
Confidence 7899999999994321222222 22222333444455689999988873
No 327
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.33 E-value=2.9e+02 Score=31.92 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=53.3
Q ss_pred CeEEEEEeeecCCCcc----------ccccccCCCC-CHHHHHHHHHHHHHhhhcCCcEEEEecCCCCCCChhHHHh---
Q 006153 83 GRTYMFMGHQKGRNTK----------ENIQRNFGMP-TPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEEL--- 148 (658)
Q Consensus 83 GrpV~VIa~d~~~~~~----------e~~~~~gGsl-~p~g~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~--- 148 (658)
|+.|++++.|--|..- -++.|. |.- +..-..-+.+.++.|...+.- |.++||.| +.+.+.+..
T Consensus 128 ~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f-~~~~~~~Pv~Iak~al~~ak~~~~D-vvIvDTAG-Rl~ide~Lm~El 204 (451)
T COG0541 128 GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF-GSGTEKDPVEIAKAALEKAKEEGYD-VVIVDTAG-RLHIDEELMDEL 204 (451)
T ss_pred CCceEEEecccCChHHHHHHHHHHHHcCCcee-cCCCCCCHHHHHHHHHHHHHHcCCC-EEEEeCCC-cccccHHHHHHH
Confidence 6789999988655321 122222 331 122334556677777766544 55789999 444332211
Q ss_pred --------------------chHHHHHHHHHHHhcCCCCEEEEEc----CCCchhhhhhhc
Q 006153 149 --------------------GQGEAIAHNLRTMFGLKVPIISIVI----GEGGSGGALAIG 185 (658)
Q Consensus 149 --------------------Gq~~aiA~~l~als~a~VPiISVVi----G~a~GGGAlalg 185 (658)
|| -|...+....-.+|+-+||+ |.+=||||+.+.
T Consensus 205 ~~Ik~~~~P~E~llVvDam~GQ---dA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~ 262 (451)
T COG0541 205 KEIKEVINPDETLLVVDAMIGQ---DAVNTAKAFNEALGITGVILTKLDGDARGGAALSAR 262 (451)
T ss_pred HHHHhhcCCCeEEEEEecccch---HHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhH
Confidence 33 22223322233466666655 888889988763
No 328
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=26.06 E-value=1.7e+02 Score=32.37 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCC
Q 006153 118 RMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEG 176 (658)
Q Consensus 118 R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a 176 (658)
+++++.++ ++.--.++.+|=.|++.... + ..+...++|.|++.-..|
T Consensus 271 ~l~~li~~-~~~palvig~PVGFV~a~es---------K--e~L~~~~vP~I~~~G~kG 317 (335)
T PRK05782 271 ETLKLVKE-GVDIPFIVATPPGFTNAKEV---------K--EALIESGIPSVVLRGTYG 317 (335)
T ss_pred HHHHHHhc-CCCCcEEEEeCCcccCHHHH---------H--HHHHhCCCCEEEEecCCC
Confidence 34444444 43223366666666653211 1 122346899998665554
No 329
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.94 E-value=3.7e+02 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=13.5
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 006153 576 KPDVKSKCKIQALEQQIKQ 594 (658)
Q Consensus 576 ~p~~~~k~kie~l~~~I~~ 594 (658)
||-.++..+|++|++|+.+
T Consensus 83 ~~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 83 SEMDELTERVDALERQVAD 101 (108)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 5556777788888877754
No 330
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.93 E-value=1.5e+02 Score=32.89 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 006153 438 LDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVE 517 (658)
Q Consensus 438 ~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~ 517 (658)
.++.+...+||+|++ .|+-|++.|++|+.++.-+..+.+.++--++|.|.++=+...+ .++..+++++
T Consensus 35 ~aLr~EN~~LKkEN~----------~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~v--lfq~d~~~ld 102 (420)
T PF07407_consen 35 FALRMENHSLKKENN----------DLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELV--LFQRDDLKLD 102 (420)
T ss_pred hhHHHHhHHHHHHHH----------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--hhcccccccc
Confidence 344455556777665 3666777777777766555566666666666666666542211 1455555554
Q ss_pred H
Q 006153 518 V 518 (658)
Q Consensus 518 ~ 518 (658)
.
T Consensus 103 ~ 103 (420)
T PF07407_consen 103 S 103 (420)
T ss_pred H
Confidence 4
No 331
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.72 E-value=2.8e+02 Score=23.53 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcC
Q 006153 538 KMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVN 601 (658)
Q Consensus 538 k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ 601 (658)
+-.++++.|....+++ +++++.+..++... .+++++++-+++++++.++++
T Consensus 23 sG~e~R~~l~~~~~~~------~~~~~~~~~~~~~~-------~k~~~~~~~~~~~e~~~e~~d 73 (74)
T PF12732_consen 23 SGKETREKLKDKAEDL------KDKAKDLYEEAKEK-------VKEKAEETADEAKEKAKELKD 73 (74)
T ss_pred CcHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 4456777777777644 44444443333311 466666666666666666543
No 332
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.34 E-value=2.8e+02 Score=27.00 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHHHHHHH
Q 006153 538 KMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKP-DVKSKCKIQALEQQIKQ 594 (658)
Q Consensus 538 k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p-~~~~k~kie~l~~~I~~ 594 (658)
.+..+..+|..--+++ ..++..+-.|.+|++.-.++| ..+....|+.|.++|.+
T Consensus 73 el~~ld~ei~~L~~el---~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 73 ELAELDAEIKELREEL---AELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4556666665555555 567888888888888888877 55668888888888764
No 333
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=25.23 E-value=40 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHhhhcCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCC
Q 006153 117 LRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGE 175 (658)
Q Consensus 117 ~R~i~lAdk~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~ 175 (658)
.+++++.++.++..-.++.+|=.|.+.. | .=..+.+.++|.|+ +.|+
T Consensus 133 ~~ll~li~~~~~~PalVIg~PVGFV~A~-E----------SKe~L~~~~vP~I~-~~G~ 179 (198)
T PF02570_consen 133 FELLELIEEGGVRPALVIGVPVGFVGAA-E----------SKEALMQSGVPYIT-VRGR 179 (198)
T ss_dssp HHHHHHHHTTT-TTSEEEE---SSSSHH-H----------HHHHHHHSTS-EEE-ESSS
T ss_pred HHHHHHHHhcCCCCcEEEECCCcccCcH-H----------HHHHHHhCCCCEEE-EecC
Confidence 3455555555554455566666666632 1 12233456999998 4555
No 334
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.63 E-value=1.5e+02 Score=32.85 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCCh
Q 006153 534 NFRSKMENLNEEINKKIEDVINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSS 603 (658)
Q Consensus 534 ~~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss 603 (658)
+++.+-..||+|++ +|+.|+|.|++|+-++.. -+|++- ++.+-++|..+||..
T Consensus 36 aLr~EN~~LKkEN~----------~Lk~eVerLE~e~l~s~V------~E~vet-~dv~~d~i~Kimnk~ 88 (420)
T PF07407_consen 36 ALRMENHSLKKENN----------DLKIEVERLENEMLRSHV------CEDVET-NDVIYDKIVKIMNKM 88 (420)
T ss_pred hHHHHhHHHHHHHH----------HHHHHHHHHHHHhhhhhh------hhHHHH-HHHHHHHHHHHHHHH
Confidence 66777778888875 588899999999987665 344443 355667777777764
No 335
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=24.59 E-value=68 Score=32.84 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHhhhcCCcEEEEecCCC
Q 006153 118 RMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 118 R~i~lAdk~~lPIV~LiDTpG 138 (658)
.++..|.+.|+|+|.|+||-.
T Consensus 122 ~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 122 QALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred HHHHHHHHcCCCEEEEeeCCC
Confidence 678899999999999999865
No 336
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.31 E-value=1.4e+03 Score=28.19 Aligned_cols=252 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH---hhHHHHH-HHHHcCcHHHHHHHHHHhccCCCCCCCCChH
Q 006153 321 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKE---VDHEFSE-AAKAMGMQEKFATLRAEFSKGNSRDQLMDPI 396 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (658)
+|+.|.++|| +||.+|+. .+--+-+.|+|+..| ++.+|++ -+-+..|+.++..+..-+--+.++-|.-|.+
T Consensus 499 ~L~sE~~~lk-~il~~Kee----~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrl 573 (961)
T KOG4673|consen 499 KLQSEENKLK-SILRDKEE----TEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRL 573 (961)
T ss_pred HHHHHHHHHH-HHhhhHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhh
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHH---HHHHHHHHHHhHHhhcCcchHHHHHHHHH
Q 006153 397 LMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKA---AKLKQEINKKFEEVICRPDIKEKMEAIKA 473 (658)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~---~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~ 473 (658)
=.+..-.-...+-|.++.--.-.+++.|-.--+|-.=--..-++-... +.--+|+-+.++ --.--|---+++|.+
T Consensus 574 kQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~--~TTrPLlRQIE~lQ~ 651 (961)
T KOG4673|consen 574 KQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVP--ETTRPLLRQIEALQE 651 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHH
Q ss_pred HHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 006153 474 KLQDSGASSFSDLEDDLKEKLVETKKEIESELIDG-LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIED 552 (658)
Q Consensus 474 E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~-~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~ 552 (658)
=+.++ ++.-.-+...|-+++. +-+..|+.+ +.--|-+-+.|..|....+..-.+.-++.....|.+-..+.=..
T Consensus 652 tl~~~-~tawereE~~l~~rL~----dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr 726 (961)
T KOG4673|consen 652 TLSKA-ATAWEREERSLNERLS----DSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNR 726 (961)
T ss_pred HHhhh-hhHHHHHHHHHHHhhh----hHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccchhHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH
Q 006153 553 VINSSDLKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQR 595 (658)
Q Consensus 553 ~~~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~ 595 (658)
. .+.+..+-+++.|+. ..+.++-.|.++|++.
T Consensus 727 ~---~~~~~e~~~~qeE~~--------~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 727 A---AENRQEYLAAQEEAD--------TLEGRANQLEVEIREL 758 (961)
T ss_pred H---hhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
No 337
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.18 E-value=8.5e+02 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 006153 445 AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 478 (658)
Q Consensus 445 ~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~ 478 (658)
.++|.||++.|- +-+.+|+-|+-++..+
T Consensus 95 ~q~k~Eiersi~------~a~~kie~lkkql~ea 122 (222)
T KOG3215|consen 95 VQKKLEIERSIQ------KARNKIELLKKQLHEA 122 (222)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 457778888875 5678888888888777
No 338
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=23.63 E-value=9.8e+02 Score=26.09 Aligned_cols=55 Identities=33% Similarity=0.410 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCC
Q 006153 321 KLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGN 387 (658)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (658)
++..|.-.+.+++.... .-...|..|.|+=.+|.-++.+..++|..|--|+-+.|
T Consensus 33 ell~e~k~~~k~~~~~~------------Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 33 ELLEEMKRLQKQLKKLQ------------KKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQN 87 (309)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556655554433 33445666777777777788888999999988888776
No 339
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=23.57 E-value=2.8e+02 Score=32.84 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhcCCcEEEEecC
Q 006153 111 HGYRKALRMMYYADHHGFPIVTFIDT 136 (658)
Q Consensus 111 ~g~rKa~R~i~lAdk~~lPIV~LiDT 136 (658)
.|..-..|.++.+.+||+|+|.-+|-
T Consensus 356 sGl~NL~RHIenvr~FGvPvVVAINK 381 (557)
T PRK13505 356 KGFANLERHIENIRKFGVPVVVAINK 381 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 47788889999999999999999995
No 340
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.47 E-value=78 Score=32.62 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHhhhcCCcEEEEecCCC
Q 006153 117 LRMMYYADHHGFPIVTFIDTPG 138 (658)
Q Consensus 117 ~R~i~lAdk~~lPIV~LiDTpG 138 (658)
..++..|.+.|+|+|.|+||-.
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCC
Confidence 3677888888999999988754
No 341
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=23.23 E-value=2.4e+03 Score=30.44 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHhhCCCCChhhHHH-HHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 006153 536 RSKMENLNEEINKKIEDVI--NSSDLKDMIELLKLEIAKAGKKPDVKSKCK-IQALEQQIKQRLSEAVNSSELKEKHEEL 612 (658)
Q Consensus 536 ~~k~~~l~~ei~kki~~~~--~~~~ik~kiE~LK~Ev~~ag~~p~~~~k~k-ie~l~~~I~~~i~~a~~ss~lk~k~E~L 612 (658)
+.+++.|.++|..+.+.+- .+..|..-+..|+.|+... .++|.- +...-+-|.+.|...+| .++.++..|
T Consensus 661 ~e~le~ll~~ik~ey~Ki~~mk~d~i~~~l~~lk~el~~l-----~~lKk~I~k~~~~~i~~~m~~~ln--~~~~k~~~L 733 (2722)
T PTZ00440 661 KEDLQTLLNTSKNEYEKLEFMKSDNIDNIIKNLKKELQNL-----LSLKENIIKKQLNNIEQDISNSLN--QYTIKYNDL 733 (2722)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 5678888888888777663 3445777777777776531 122221 23333344444444444 247777777
Q ss_pred HHHH
Q 006153 613 MAEI 616 (658)
Q Consensus 613 k~e~ 616 (658)
+.-+
T Consensus 734 ~~~i 737 (2722)
T PTZ00440 734 KSSI 737 (2722)
T ss_pred HHHH
Confidence 7665
No 342
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=23.05 E-value=1.8e+02 Score=29.03 Aligned_cols=15 Identities=47% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHh
Q 006153 539 MENLNEEINKKIEDV 553 (658)
Q Consensus 539 ~~~l~~ei~kki~~~ 553 (658)
.-+|+++|+|||+++
T Consensus 61 ~~Kl~E~iekkieea 75 (175)
T COG4741 61 EWKLKEWIEKKIEEA 75 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345777888888655
No 343
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.47 E-value=1.5e+03 Score=27.87 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCCh
Q 006153 559 LKDMIELLKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSS 603 (658)
Q Consensus 559 ik~kiE~LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss 603 (658)
+++.+..|+..+...-..-... .++|..|+.+++.-...|=++.
T Consensus 396 ~~~e~q~L~ekl~~lek~~re~-qeri~~LE~ELr~l~~~A~E~q 439 (717)
T PF09730_consen 396 LESEVQNLKEKLMSLEKSSRED-QERISELEKELRALSKLAGESQ 439 (717)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhHH
Confidence 4555555555554443322222 5567777777666555554433
No 344
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=9.3e+02 Score=28.52 Aligned_cols=177 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccCCCCCCCCChHHHHHHHHH
Q 006153 325 EVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKGNSRDQLMDPILMDKITEL 404 (658)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (658)
|++|+|..|-.-++- ++.|++|+.|+---.-++-..--.+..+..++-++.+--+.-....-.|.++.+
T Consensus 306 eL~K~kde~~~n~~~---------~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~d-- 374 (613)
T KOG0992|consen 306 ELEKAKDEIKQNDDK---------VKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADD-- 374 (613)
T ss_pred HHHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH--
Q ss_pred HHHHhhccCCCCC-hhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCc-chHHHHHHHHHHHhhcCCCC
Q 006153 405 KNEFNQGLASAPN-YASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRP-DIKEKMEAIKAKLQDSGASS 482 (658)
Q Consensus 405 ~~~~~~~~~~~~~-~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~-~lkek~~~lk~E~~k~~~s~ 482 (658)
+|...++-+-. .+.||.+.-.-+ .+ ..+.|..|+.|+++.-.....-. .|---=..+..=.+-+++|+
T Consensus 375 --r~se~~e~teqkleelk~~f~a~q----~K----~a~tikeL~~El~~yrr~i~~~~s~ia~~~~e~pqq~s~sRSsS 444 (613)
T KOG0992|consen 375 --RFSEYSELTEQKLEELKVQFTAKQ----EK----HAETIKELEIELEEYRRAILRNASEIAQYEDELPQQLSLSRSSS 444 (613)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHhccccccccCCCCccchhhhhhccccc
Q ss_pred CCCCC---------------------------hHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchh
Q 006153 483 FSDLE---------------------------DDLKEKLVETKKEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNF 535 (658)
Q Consensus 483 ~~~l~---------------------------~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~ 535 (658)
...+| .+|.++|+.+..+ +..+|.
T Consensus 445 s~s~~tr~s~e~r~ss~agssa~~v~~~qqDka~lierivrLQ~a-------------------------~arkne---- 495 (613)
T KOG0992|consen 445 SGSQETRNSQEVRDSSEAGSSAQQVSSPQQDKADLIERIVRLQLA-------------------------IARKNE---- 495 (613)
T ss_pred ccchhhchhhhhcchhhhhhhhhhcCchhhhhHHHHHHHHHHHHH-------------------------HHHhhh----
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 006153 536 RSKMENLNEEINKKIEDV 553 (658)
Q Consensus 536 ~~k~~~l~~ei~kki~~~ 553 (658)
||+-|++-+-+=+++|
T Consensus 496 --kiefLe~h~~qlveev 511 (613)
T KOG0992|consen 496 --KIEFLEQHLIQLVEEV 511 (613)
T ss_pred --HhHHHHHHHHHHHHHH
No 345
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.27 E-value=1.6e+02 Score=31.52 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCCCCCCChh
Q 006153 113 YRKALRMMYYADHHGFPIVTFIDTPGAYADLK 144 (658)
Q Consensus 113 ~rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~ 144 (658)
.....++++.+.+.|.-.|+|.||-|.....+
T Consensus 146 ~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~ 177 (280)
T cd07945 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFE 177 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCCCCHHH
Confidence 34555666666667888999999999876654
No 346
>PRK10698 phage shock protein PspA; Provisional
Probab=22.17 E-value=8.9e+02 Score=25.07 Aligned_cols=89 Identities=12% Similarity=0.235 Sum_probs=51.8
Q ss_pred HhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHhhCCCCChhh
Q 006153 509 LESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSS-------DLKDMIELLKLEIAKAGKKPDVKS 581 (658)
Q Consensus 509 ~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~-------~ik~kiE~LK~Ev~~ag~~p~~~~ 581 (658)
+..|..++.-+++|-..|.. +.+..+-.+.||+-+-. +++. .+.+||+.+.++....+..+++.+
T Consensus 122 l~~L~~ki~eak~k~~~L~a-------R~~~A~a~~~~~~~~~~-~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l 193 (222)
T PRK10698 122 IGELENKLSETRARQQALML-------RHQAASSSRDVRRQLDS-GKLDEAMARFESFERRIDQMEAEAESHGFGKQKSL 193 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCH
Confidence 44444455555544444444 33445555555555443 2211 388899999988877655333334
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 006153 582 KCKIQALEQQIKQRLSEAVNSSELKEKHEELMAEI 616 (658)
Q Consensus 582 k~kie~l~~~I~~~i~~a~~ss~lk~k~E~Lk~e~ 616 (658)
...+.+|. .++++-...+.||.++
T Consensus 194 ~~e~~~le-----------~~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 194 DQQFAELK-----------ADDEISEQLAALKAKM 217 (222)
T ss_pred HHHHHHhh-----------ccchHHHHHHHHHHHh
Confidence 44455543 3566888888999887
No 347
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=21.78 E-value=1.5e+03 Score=27.69 Aligned_cols=184 Identities=13% Similarity=0.221 Sum_probs=89.8
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCC-CCCchHHHHHHHHHHHHhhHHHHHHHHHc--Cc-HHHHHHHHHHhccCCCCCCCC
Q 006153 318 SKEKLEDEVEKLKQQILKAKESST-KPPDAALNVMIQKLKKEVDHEFSEAAKAM--GM-QEKFATLRAEFSKGNSRDQLM 393 (658)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~ 393 (658)
+..++-.-+..+..+.++.-.... .-....-.+--..|...++..+..++... .| +.-+......++++-...+..
T Consensus 289 ~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~F 368 (742)
T PF05879_consen 289 VVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDF 368 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 334555555555555554322100 11123334444566666777776666542 11 123344555555443334455
Q ss_pred ChHHHHHHHHHHHHHhhccCCC-----------CChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCc
Q 006153 394 DPILMDKITELKNEFNQGLASA-----------PNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRP 462 (658)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~ 462 (658)
...+..-..+...+|+...+.. ..+..|.+.|+..- .......+++++.++.+-+..++++.+
T Consensus 369 a~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~se~~~~~L~~dLd~~~---~~lR~~el~~l~~~~eK~l~~~l~e~v--- 442 (742)
T PF05879_consen 369 AEAVRECKQSALEEFEESAEDLVIEGADWSYSEEEREKLEEDLDEHS---SKLRKEELNELVARIEKKLKSELKEPV--- 442 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHH---
Confidence 5666777777778888775221 22334444443332 222222334444333333333333211
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhh
Q 006153 463 DIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIESELIDGLESLGLDVEVVK 520 (658)
Q Consensus 463 ~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~~~l~~~~~sl~~~~~~~~ 520 (658)
..++. ....++=+-+...+..+-+.....+...+.++++.-+...
T Consensus 443 ---------~~~l~----~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~f~~s~~e~~ 487 (742)
T PF05879_consen 443 ---------ESLLE----NPSPDMWDRIRKLFESATESAVSKFSDRLKGFGLSEEENE 487 (742)
T ss_pred ---------HHHHh----CCChhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 12222 2235666666666666677777777777777766655443
No 348
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.73 E-value=4.3e+02 Score=25.43 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Q 006153 502 ESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKIEDVINSSD-LKDMIELLKLEIA 571 (658)
Q Consensus 502 ~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki~~~~~~~~-ik~kiE~LK~Ev~ 571 (658)
...|+.|..+++..++-|. + .+..-|+++.++|+.|-..=| ..+-.++.+.||.
T Consensus 38 rr~m~~A~~~v~kql~~vs-------~---------~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~ 92 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVS-------E---------SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVT 92 (126)
T ss_pred HHhHHHHHHHHHHHHHHHH-------H---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3568888888888888766 1 344566666677766654433 4444444444443
No 349
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=21.63 E-value=1.3e+03 Score=26.96 Aligned_cols=161 Identities=22% Similarity=0.303 Sum_probs=92.0
Q ss_pred CCChhhhHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHhhHHHHHHHHHcCcHHHHHHHHHHhccC--CCCCCCC
Q 006153 316 KTSKEKLEDEVEKLKQQILKAKESSTKPPDAALNVMIQKLKKEVDHEFSEAAKAMGMQEKFATLRAEFSKG--NSRDQLM 393 (658)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 393 (658)
+....++..-+.+|-+.|.+.+.. ..++|.+=-.|+..-+ ..+-.|.+|...+..|+... +.-++.+
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~e--------V~~~I~~~y~df~~~~---~~~~~L~~~~~~l~~eI~d~l~~~~~~~i 74 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEE--------VHSMINKKYSDFSPSL---QSAKDLIERSKSLAREINDLLQSEIENEI 74 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 445667777777777777776654 3444444433333333 33455788899999988443 2124445
Q ss_pred ChHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHH---hHHhhcCcch---HHH
Q 006153 394 DPILMDKITELKNEFNQGLASAPNYASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKK---FEEVICRPDI---KEK 467 (658)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~---~~ea~~~~~l---kek 467 (658)
.+.|.+-.+ .+..|++++.......... +.+ ++|++. +.+++..-.+ -+.
T Consensus 75 ~~~l~~a~~--------------e~~~L~~eL~~~~~~l~~L------~~L----~~i~~~l~~~~~al~~~~~~~Aa~~ 130 (593)
T PF06248_consen 75 QPQLRDAAE--------------ELQELKRELEENEQLLEVL------EQL----QEIDELLEEVEEALKEGNYLDAADL 130 (593)
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 555555444 2456777777766554421 111 222222 2233333222 345
Q ss_pred HHHHHHHHhhcCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 006153 468 MEAIKAKLQDSGASS--FSDLEDDLKEKLVETKKEIESELIDGLES 511 (658)
Q Consensus 468 ~~~lk~E~~k~~~s~--~~~l~~~Lkeki~k~k~E~~~~l~~~~~s 511 (658)
++.++.-+.....+. .-.+=..|+.+...++..+...|.+.+..
T Consensus 131 L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~ 176 (593)
T PF06248_consen 131 LEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWER 176 (593)
T ss_pred HHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666665532222 34666889999999999999999888543
No 350
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=21.57 E-value=1.3e+02 Score=33.80 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCCchh-hhhhhcc---ccEEEEEcCce-EEE-eCHHHHHHH
Q 006153 164 LKVPIISIVIGEGGSG-GALAIGC---ANKLLMLENAV-FYV-ASPEACAAI 209 (658)
Q Consensus 164 a~VPiISVViG~a~GG-GAlalg~---aD~ViA~p~A~-i~V-mgPEgaAsI 209 (658)
..|.++..-+|+++|+ |+|+++. +|+.+-.-..+ |+. ++|-.++..
T Consensus 231 ~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~ 282 (388)
T COG0156 231 EEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAA 282 (388)
T ss_pred ccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHH
Confidence 3457788888988885 6666654 55554433333 333 555554433
No 351
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=21.54 E-value=2.4e+02 Score=29.27 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=8.6
Q ss_pred CCCEEEEEcCCC
Q 006153 165 KVPIISIVIGEG 176 (658)
Q Consensus 165 ~VPiISVViG~a 176 (658)
++|.|++.-..|
T Consensus 180 ~vP~I~~~GrkG 191 (208)
T PRK08285 180 GVPYLIVRGRRG 191 (208)
T ss_pred CCCEEEEecCCC
Confidence 799998655554
No 352
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.46 E-value=2.8e+02 Score=32.92 Aligned_cols=41 Identities=41% Similarity=0.486 Sum_probs=26.2
Q ss_pred cchhHHHHHH-HHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q 006153 556 SSDLKDMIEL-LKLEIAKAGKKPDVKSKCKIQALEQQIKQRLSEAVNSSELKEKHEEL 612 (658)
Q Consensus 556 ~~~ik~kiE~-LK~Ev~~ag~~p~~~~k~kie~l~~~I~~~i~~a~~ss~lk~k~E~L 612 (658)
++.=|+|+|. ||-||. |.+.|..||| .-++|++||.|--+|
T Consensus 36 n~sqkeK~e~DLKkEIK------------KLQRlRdQIK----tW~ss~dIKDK~~L~ 77 (575)
T KOG2150|consen 36 NVSQKEKLESDLKKEIK------------KLQRLRDQIK----TWQSSSDIKDKDSLL 77 (575)
T ss_pred ChhHHHHHHHHHHHHHH------------HHHHHHHHHH----hhhcccccccHHHHH
Confidence 4556666654 666654 4555555555 577899999984433
No 353
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=21.18 E-value=84 Score=22.74 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHH
Q 006153 398 MDKITELKNEFNQGLASAPNYASLKYKLD 426 (658)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~Lk~ki~ 426 (658)
.+++.+|++-|..++=+.-+|...|++|+
T Consensus 2 ~~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 2 EDRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999999986
No 354
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=20.95 E-value=3.8e+02 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 006153 535 FRSKMENLNEEINKKIEDVINSSDLKDMIELLKL 568 (658)
Q Consensus 535 ~~~k~~~l~~ei~kki~~~~~~~~ik~kiE~LK~ 568 (658)
+..+++.|+.+|.++..- .-...+++.++..
T Consensus 7 ~~~~l~~L~~~l~~E~~~---r~Gaenm~~~~~~ 37 (72)
T cd00089 7 LQSRLERLEKELSIELKV---KEGAENLLRLYSD 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 345677777777766542 1345666666554
No 355
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.68 E-value=5.4e+02 Score=27.35 Aligned_cols=104 Identities=25% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHH
Q 006153 419 ASLKYKLDMLKEFSNAKSLLDSKNKAAKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDSGASSFSDLEDDLKEKLVETK 498 (658)
Q Consensus 419 ~~Lk~ki~~~ke~s~~~~~~~~~~~~~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k 498 (658)
.+++.--.++...+......+++..+.++|+.++.-=+++..-++..++++.... +|++++.++.
T Consensus 73 ~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~---------------~l~~~~~~~e 137 (239)
T COG1579 73 ERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE---------------DLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcCcchhHhhhhhHHhhhccccchhhhhHHHHHHHHHHHH
Q 006153 499 KEIESELIDGLESLGLDVEVVKSKAKELSEQTSFSNFRSKMENLNEEINKKI 550 (658)
Q Consensus 499 ~E~~~~l~~~~~sl~~~~~~~~~~~k~~~~~~~~~~~~~k~~~l~~ei~kki 550 (658)
+. ++++-.++...+....-....++. +.++|+.+++.++
T Consensus 138 ~~----~~e~~~~~e~e~~~i~e~~~~~~~---------~~~~L~~~l~~el 176 (239)
T COG1579 138 KN----LAEAEARLEEEVAEIREEGQELSS---------KREELKEKLDPEL 176 (239)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcCHHH
No 356
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=20.43 E-value=1.6e+02 Score=23.05 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHhhcCcchHHHHHHHHHHHhhc
Q 006153 445 AKLKQEINKKFEEVICRPDIKEKMEAIKAKLQDS 478 (658)
Q Consensus 445 ~~Lk~Ei~~~~~ea~~~~~lkek~~~lk~E~~k~ 478 (658)
+++||||=.++.-=+..+. .|-++|++.|+++.
T Consensus 6 e~~KqEIL~EvrkEl~K~K-~EIIeA~~~eL~r~ 38 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK-EEIIEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 4455555544432221111 23445555555544
No 357
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=20.41 E-value=6.2e+02 Score=27.75 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=28.1
Q ss_pred cCCcEEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchh
Q 006153 126 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSG 179 (658)
Q Consensus 126 ~~lPIV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GG 179 (658)
.+.++|+|+.=+++..|.-.| .+...+..+.|+|.||...++++
T Consensus 143 ~~~~vv~~~GDGa~~~g~~~E----------aL~tA~~~~LPvi~Vv~NN~~~~ 186 (341)
T TIGR03181 143 EDNVAVTYFGDGGTSEGDFYE----------ALNFAGVFKAPVVFFVQNNQWAI 186 (341)
T ss_pred CCCEEEEEecCCccccChHHH----------HHHHHhccCCCEEEEEECCCCcc
Confidence 456788887766665443222 23334457899999998776554
No 358
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=20.31 E-value=2.2e+02 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCCCCCCChh
Q 006153 114 RKALRMMYYADHHGFPIVTFIDTPGAYADLK 144 (658)
Q Consensus 114 rKa~R~i~lAdk~~lPIV~LiDTpGa~~g~~ 144 (658)
.....+++.+.+.|...|+|.||.|......
T Consensus 137 ~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~ 167 (237)
T PF00682_consen 137 EELLELAEALAEAGADIIYLADTVGIMTPED 167 (237)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEETTS-S-HHH
T ss_pred HHHHHHHHHHHHcCCeEEEeeCccCCcCHHH
Confidence 4555666666677999999999999886654
No 359
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=20.07 E-value=2.6e+02 Score=27.57 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCChhHHHhchHHHHHHHHHHHhcCCCCEEEEEcCCCchhhhhhhccccEEEEEcC
Q 006153 130 IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIISIVIGEGGSGGALAIGCANKLLMLEN 195 (658)
Q Consensus 130 IV~LiDTpGa~~g~~aE~~Gq~~aiA~~l~als~a~VPiISVViG~a~GGGAlalg~aD~ViA~p~ 195 (658)
.+++.|-.|-.++.. .+|..+......+...|+.|+|.++|-.--....||.++++..
T Consensus 69 ~~i~LDe~Gk~~sS~--------~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~ 126 (157)
T PRK00103 69 RVIALDERGKQLSSE--------EFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSK 126 (157)
T ss_pred EEEEEcCCCCcCCHH--------HHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEecc
Confidence 678888888766532 2566666666667778999999998876666667888887654
No 360
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=20.04 E-value=4.6e+02 Score=24.37 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 006153 467 KMEAIKAKLQDSGASSFSDLEDDLKEKLVETKKEIE 502 (658)
Q Consensus 467 k~~~lk~E~~k~~~s~~~~l~~~Lkeki~k~k~E~~ 502 (658)
=|++||+||...+. -||-..+.+.++.++|.
T Consensus 13 EYe~LKEEi~~l~~-----~~~~~~e~l~~i~r~f~ 43 (99)
T PF13758_consen 13 EYEGLKEEIEALPE-----DDDATREDLLRIRRDFG 43 (99)
T ss_pred HHHHHHHHHHhccc-----cCCCCHHHHHHHHHhcC
Confidence 37899999998744 34445566777777766
Done!