BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006154
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG----------CYQQARELMKVMIL 596
G + EA ++ E R G+ +++ YN+L+ ++C + ++ K MI+
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIV 98
Query: 597 HGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645
++P+ T+T PE ++ M G+ P ++Y +
Sbjct: 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPAL 147
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 406 RNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC----------KSNNLAAAKQLLSSM 455
+ G V +A +L+++ + Y YN+L+ Y+C + L+ + M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 456 IVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515
IV ++P+ T+ + E A + + MK +P L Y + G C+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 516 DAA 518
D A
Sbjct: 157 DKA 159
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 331 IDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390
+D ++ G EALRL DE + G+ + YN L+V S
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVL-------------LYVCS------- 72
Query: 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQ 450
+ T S GL R F + Q++ + +V + ++ ++ A
Sbjct: 73 LAEAATESSPNPGLSR------GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFD 126
Query: 451 LLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490
++ M G+ P + +YG + G+C+ G+ + A +V +M
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166
>pdb|1W1U|A Chain A, Inactive Urocanase-Sa Cocrystallized With Urocanate
pdb|1W1U|B Chain B, Inactive Urocanase-Sa Cocrystallized With Urocanate
Length = 557
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 265 GDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDC 322
G L+ L +G M G L ++ C +N + R++F E RY +A D
Sbjct: 163 GSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVDEQATDLDDA 222
Query: 323 NVRTYATLIDGYA-----RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367
VR +G A G ++E + E+VKRG+ P+ V ++ H
Sbjct: 223 LVRIAKYTAEGKAISIALHGNAAE----ILPELVKRGVRPDMVTDQTSAH 268
>pdb|1UWK|A Chain A, The High Resolution Structure Of Urocanate Hydratase From
Pseudomonas Putida In Complex With Urocanate
pdb|1UWK|B Chain B, The High Resolution Structure Of Urocanate Hydratase From
Pseudomonas Putida In Complex With Urocanate
Length = 557
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 265 GDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDC 322
G L+ L +G M G L ++ C +N + R++F E RY +A D
Sbjct: 163 GSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVDEQATDLDDA 222
Query: 323 NVRTYATLIDGYA-----RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367
VR +G A G ++E + E+VKRG+ P+ V ++ H
Sbjct: 223 LVRIAKYTAEGKAISIALHGNAAE----ILPELVKRGVRPDMVTDQTSAH 268
>pdb|1UWL|A Chain A, 1.76a Structure Of Urocanate Hydratase From Pseudomonas
Putida
pdb|1UWL|B Chain B, 1.76a Structure Of Urocanate Hydratase From Pseudomonas
Putida
Length = 557
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 265 GDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDC 322
G L+ L +G M G L ++ C +N + R++F E RY +A D
Sbjct: 163 GSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVDEQATDLDDA 222
Query: 323 NVRTYATLIDGYA-----RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367
VR +G A G ++E + E+VKRG+ P+ V ++ H
Sbjct: 223 LVRIAKYTAEGKAISIALHGNAAE----ILPELVKRGVRPDMVTDQTSAH 268
>pdb|2V7G|A Chain A, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|B Chain B, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|C Chain C, Crystal Structure Of An Engineered Urocanase Tetramer
pdb|2V7G|D Chain D, Crystal Structure Of An Engineered Urocanase Tetramer
Length = 557
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 265 GDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDC 322
G L+ L +G M G L ++ C +N + R++F E RY +A D
Sbjct: 163 GSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVDEQATDLDDA 222
Query: 323 NVRTYATLIDGYA-----RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367
VR +G A G ++E + E+VKRG+ P+ V ++ H
Sbjct: 223 LVRIAKYTAEGKAISIALHGNAAE----ILPELVKRGVRPDMVTDQTSAH 268
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 379 LFVLSDMIDKHICPDHFTYSILTKGLCR---NGCVKQAFKLHNQVLEEHMVGDAYSYNIL 435
LF L + K+ D F + + R NG ++QA+K QV G Y YN +
Sbjct: 517 LFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF-----GSVYYYNDI 571
Query: 436 INYLCKSNNLAAAKQLLSSMIVR 458
++ L NN+ +L+ M+
Sbjct: 572 LDRLQGRNNVFTCTAVLTDMLTE 594
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 379 LFVLSDMIDKHICPDHFTYSILTKGLCR---NGCVKQAFKLHNQVLEEHMVGDAYSYNIL 435
LF L + K+ D F + + R NG ++QA+K QV G Y YN +
Sbjct: 520 LFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF-----GSVYYYNDI 574
Query: 436 INYLCKSNNLAAAKQLLSSMIVR 458
++ L NN+ +L+ M+
Sbjct: 575 LDRLQGRNNVFTCTAVLTDMLTE 597
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 406 RNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC----------KSNNLAAAKQLLSSM 455
+ G V +A +L+++ + Y YN+L+ Y+C + L+ +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 456 IVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515
IV ++P+ T+ + E A + K +P L Y + G C+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 516 DAA 518
D A
Sbjct: 157 DKA 159
>pdb|3R1O|A Chain A, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges
pdb|3R1O|B Chain B, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges
pdb|3R1P|A Chain A, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1P|B Chain B, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1P|C Chain C, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1P|D Chain D, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1P|E Chain E, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1P|F Chain F, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, Form P1
pdb|3R1V|A Chain A, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, In Complex With An Azo Compound
pdb|3R1V|B Chain B, Odorant Binding Protein 7 From Anopheles Gambiae With Four
Disulfide Bridges, In Complex With An Azo Compound
Length = 127
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 335 ARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV----------EGALFVLSD 384
A G+SEE LR C + G +P IH LF + DV + L+++ D
Sbjct: 23 AESGASEEQLRTCLD----GTVPTAPAAKCYIHCLFDKIDVVDEATGRILLDRLLYIIPD 78
Query: 385 MIDKHICPDHFTYS---ILTKGLCRNG--CVKQAFKLHNQVLE 422
+ + DH T I+T C VK F H++V++
Sbjct: 79 DVKAAV--DHLTRECSHIVTPDKCETAYETVKCYFNAHDEVIK 119
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 163 EGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLV 222
E A I++ + K + HAWNN+ + LNE+ + KE S N+ +V
Sbjct: 11 EPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELK---PISKEGHSSSLFGNIKGATIV 67
Query: 223 -----IYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFAL-----K 272
++ + + + +EA S + L + V F + I VG L A +
Sbjct: 68 DALDTLFIMGMKTEFQEAKSWIKKYLDFNVNAEVSVFEVNIR---FVGGLLSAYYLSGEE 124
Query: 273 LFRKMGVMSGDSVLPNSVTHNCI 295
+FRK V G +LP T + I
Sbjct: 125 IFRKKAVELGVKLLPAFHTPSGI 147
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL 355
+ +R+ G+D + RT +TL D Y R E E+ +RGL
Sbjct: 66 DALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGL 112
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF---- 577
++A I LDA + N +++ IN IA+ + N GIA + IL F
Sbjct: 87 MRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENI---ILAGFSQGG 143
Query: 578 -LCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGV 634
+ + R+L +M L +P + + +T +K P V DD VL V
Sbjct: 144 IIATYTAITSQRKLGGIMALSTYLPAWDNFKGKITSINKGL-PILVCHGTDDQVLPEV 200
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL 355
+ +R+ G+D + RT +TL D Y R E E+ +RGL
Sbjct: 66 DALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,986,817
Number of Sequences: 62578
Number of extensions: 769150
Number of successful extensions: 1674
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 26
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)