Query 006154
Match_columns 658
No_of_seqs 813 out of 3929
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 19:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.7E-71 1E-75 595.9 68.6 537 75-639 354-916 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-72 6.1E-77 619.4 60.2 542 73-655 101-674 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3E-71 6.6E-76 611.2 59.0 556 71-657 134-710 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2E-69 4.3E-74 583.3 65.9 502 142-650 366-894 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.5E-63 1.4E-67 532.1 52.6 471 145-635 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-62 2.6E-67 530.0 51.3 515 91-639 84-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-34 3.2E-39 328.2 72.4 566 69-657 306-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-33 3.3E-38 319.9 75.0 567 71-657 274-856 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-25 3E-30 254.3 66.9 566 70-657 40-730 (1157)
10 PRK11447 cellulose synthase su 100.0 4.7E-25 1E-29 250.0 64.7 548 70-635 159-744 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 8.6E-21 1.9E-25 205.3 65.4 558 63-657 49-696 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 4.1E-23 8.8E-28 197.6 40.3 445 96-578 50-500 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-22 2.5E-27 194.5 39.6 446 148-612 50-499 (966)
14 KOG2002 TPR-containing nuclear 99.9 3.2E-20 6.9E-25 187.5 51.7 559 74-644 146-757 (1018)
15 PRK09782 bacteriophage N4 rece 99.9 1.3E-18 2.7E-23 188.6 65.5 539 70-638 90-710 (987)
16 KOG2002 TPR-containing nuclear 99.9 7.2E-19 1.6E-23 177.9 53.9 555 70-635 176-801 (1018)
17 PRK11788 tetratricopeptide rep 99.9 8.1E-21 1.8E-25 192.6 36.3 299 334-639 45-354 (389)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-19 1.1E-23 188.9 51.5 430 148-597 129-571 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 7.3E-19 1.6E-23 187.5 52.7 431 183-632 129-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.8E-25 189.3 36.7 303 296-604 42-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 2E-18 4.4E-23 183.2 48.0 331 99-458 47-381 (656)
22 PRK15174 Vi polysaccharide exp 99.9 3.5E-18 7.5E-23 181.5 46.5 333 219-562 45-381 (656)
23 PRK14574 hmsH outer membrane p 99.9 1E-16 2.3E-21 170.3 56.7 454 141-607 29-521 (822)
24 PRK10049 pgaA outer membrane p 99.9 4.9E-18 1.1E-22 184.4 47.9 419 142-605 11-462 (765)
25 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 181.9 49.1 387 141-571 44-463 (765)
26 PRK14574 hmsH outer membrane p 99.9 1.8E-16 4E-21 168.4 55.3 451 93-573 33-522 (822)
27 KOG2076 RNA polymerase III tra 99.9 1E-15 2.2E-20 154.5 51.8 367 96-486 141-548 (895)
28 KOG0495 HAT repeat protein [RN 99.8 1.3E-14 2.8E-19 141.0 55.5 555 73-653 266-866 (913)
29 KOG0495 HAT repeat protein [RN 99.8 5.9E-14 1.3E-18 136.4 53.0 474 141-638 405-884 (913)
30 KOG2003 TPR repeat-containing 99.8 1E-16 2.2E-21 148.6 32.0 485 145-654 200-710 (840)
31 KOG4422 Uncharacterized conser 99.8 5.5E-15 1.2E-19 136.4 42.0 418 157-597 126-590 (625)
32 KOG4422 Uncharacterized conser 99.8 4.9E-14 1.1E-18 130.2 43.7 427 181-633 116-591 (625)
33 KOG1915 Cell cycle control pro 99.8 2.9E-13 6.2E-18 126.8 48.8 472 145-632 72-585 (677)
34 KOG1915 Cell cycle control pro 99.8 3.1E-12 6.7E-17 120.1 54.1 465 99-596 78-584 (677)
35 KOG2076 RNA polymerase III tra 99.8 4.6E-13 1E-17 135.6 51.7 359 70-451 151-548 (895)
36 KOG2003 TPR repeat-containing 99.7 6.7E-14 1.5E-18 130.2 34.0 442 152-618 243-709 (840)
37 KOG1173 Anaphase-promoting com 99.7 6.3E-13 1.4E-17 127.7 39.7 287 356-649 241-533 (611)
38 KOG1155 Anaphase-promoting com 99.7 1.2E-11 2.7E-16 115.9 45.0 329 212-559 160-492 (559)
39 PRK10747 putative protoheme IX 99.7 5.1E-13 1.1E-17 133.9 35.5 148 442-596 242-389 (398)
40 KOG1155 Anaphase-promoting com 99.7 1E-11 2.2E-16 116.5 40.2 385 246-651 159-553 (559)
41 TIGR00540 hemY_coli hemY prote 99.7 8.1E-13 1.7E-17 133.3 35.1 133 463-595 262-397 (409)
42 COG2956 Predicted N-acetylgluc 99.7 5.5E-13 1.2E-17 119.1 29.3 310 53-387 30-346 (389)
43 TIGR00540 hemY_coli hemY prote 99.6 1.4E-12 2.9E-17 131.7 34.9 292 335-631 95-398 (409)
44 KOG0547 Translocase of outer m 99.6 3.2E-12 6.9E-17 120.6 34.0 218 407-631 339-565 (606)
45 PRK10747 putative protoheme IX 99.6 2.2E-12 4.8E-17 129.4 34.9 283 337-631 97-389 (398)
46 KOG1173 Anaphase-promoting com 99.6 3E-11 6.4E-16 116.4 40.2 454 144-614 47-533 (611)
47 KOG0547 Translocase of outer m 99.6 8.5E-12 1.8E-16 117.7 35.6 222 335-561 337-565 (606)
48 PF13429 TPR_15: Tetratricopep 99.6 4.5E-15 9.7E-20 142.2 13.3 259 366-630 15-275 (280)
49 PF13429 TPR_15: Tetratricopep 99.6 3.2E-15 7E-20 143.2 12.0 262 151-421 13-275 (280)
50 COG3071 HemY Uncharacterized e 99.6 9.7E-12 2.1E-16 114.9 33.5 290 303-601 98-394 (400)
51 KOG1156 N-terminal acetyltrans 99.6 1.5E-09 3.3E-14 106.6 46.1 438 142-595 37-509 (700)
52 KOG1126 DNA-binding cell divis 99.6 2.9E-12 6.2E-17 125.9 27.0 284 339-632 334-620 (638)
53 KOG1126 DNA-binding cell divis 99.6 2.1E-12 4.6E-17 126.8 25.6 285 304-600 334-623 (638)
54 COG2956 Predicted N-acetylgluc 99.6 3.9E-11 8.5E-16 107.5 30.9 287 158-457 47-346 (389)
55 KOG2047 mRNA splicing factor [ 99.5 7.8E-09 1.7E-13 101.4 47.4 494 74-590 154-716 (835)
56 KOG3785 Uncharacterized conser 99.5 2.3E-10 4.9E-15 103.8 34.5 168 470-652 365-535 (557)
57 KOG2047 mRNA splicing factor [ 99.5 2.6E-08 5.7E-13 97.8 49.1 569 64-653 50-709 (835)
58 KOG4162 Predicted calmodulin-b 99.5 9.5E-09 2.1E-13 103.2 46.5 467 158-632 239-783 (799)
59 COG3071 HemY Uncharacterized e 99.5 3.5E-10 7.6E-15 104.8 33.9 292 336-636 96-394 (400)
60 KOG3785 Uncharacterized conser 99.5 1.8E-09 3.9E-14 98.1 37.1 437 104-597 32-514 (557)
61 KOG1156 N-terminal acetyltrans 99.5 1E-08 2.2E-13 100.9 43.3 466 148-630 10-509 (700)
62 KOG4318 Bicoid mRNA stability 99.5 1E-09 2.2E-14 111.3 36.7 518 87-646 18-638 (1088)
63 KOG4318 Bicoid mRNA stability 99.4 3.3E-10 7.2E-15 114.7 30.8 481 141-653 20-580 (1088)
64 KOG1174 Anaphase-promoting com 99.4 6E-08 1.3E-12 90.3 42.6 269 321-597 229-500 (564)
65 KOG4162 Predicted calmodulin-b 99.4 8.3E-09 1.8E-13 103.6 37.5 414 176-597 318-783 (799)
66 KOG1129 TPR repeat-containing 99.4 8.2E-11 1.8E-15 105.4 20.3 240 391-638 220-462 (478)
67 PRK12370 invasion protein regu 99.4 6.4E-10 1.4E-14 116.8 30.8 217 109-352 276-501 (553)
68 PF12569 NARP1: NMDA receptor- 99.4 4.1E-08 8.8E-13 99.5 42.1 295 151-458 9-334 (517)
69 KOG1129 TPR repeat-containing 99.4 1E-10 2.2E-15 104.9 20.2 229 328-561 227-457 (478)
70 TIGR02521 type_IV_pilW type IV 99.4 7.4E-10 1.6E-14 103.6 27.2 158 470-630 71-230 (234)
71 PRK12370 invasion protein regu 99.4 6.9E-10 1.5E-14 116.5 28.8 217 373-597 318-535 (553)
72 TIGR02521 type_IV_pilW type IV 99.4 1E-09 2.2E-14 102.6 27.2 202 392-596 29-231 (234)
73 PF12569 NARP1: NMDA receptor- 99.3 1.2E-07 2.6E-12 96.2 41.9 303 95-423 5-334 (517)
74 KOG2376 Signal recognition par 99.3 1.9E-07 4.1E-12 91.2 40.3 133 515-650 357-504 (652)
75 KOG2376 Signal recognition par 99.3 3.7E-07 8E-12 89.3 41.9 451 94-594 12-517 (652)
76 KOG0985 Vesicle coat protein c 99.3 1.2E-06 2.7E-11 90.6 47.3 211 57-276 508-749 (1666)
77 KOG3617 WD40 and TPR repeat-co 99.3 6.1E-07 1.3E-11 90.8 43.9 519 36-632 748-1359(1416)
78 KOG1174 Anaphase-promoting com 99.3 7.5E-07 1.6E-11 83.2 39.8 312 319-640 189-506 (564)
79 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.3E-16 81.4 6.8 49 601-649 1-49 (50)
80 PF13041 PPR_2: PPR repeat fam 99.2 2.6E-11 5.6E-16 80.8 6.7 50 566-615 1-50 (50)
81 KOG1840 Kinesin light chain [C 99.2 7.2E-09 1.6E-13 103.5 26.8 251 396-646 201-499 (508)
82 KOG1840 Kinesin light chain [C 99.2 3.9E-09 8.4E-14 105.4 24.2 130 292-421 328-477 (508)
83 KOG0548 Molecular co-chaperone 99.2 4.1E-07 8.8E-12 88.1 35.6 415 100-563 8-456 (539)
84 COG3063 PilF Tfp pilus assembl 99.2 3.9E-08 8.5E-13 84.6 24.8 198 184-387 38-235 (250)
85 COG3063 PilF Tfp pilus assembl 99.2 3.7E-08 8.1E-13 84.7 24.7 205 432-642 38-244 (250)
86 KOG1127 TPR repeat-containing 99.2 1.7E-07 3.6E-12 96.9 33.6 477 129-630 475-994 (1238)
87 KOG0548 Molecular co-chaperone 99.2 3.1E-07 6.6E-12 89.0 33.2 396 189-615 10-471 (539)
88 KOG4340 Uncharacterized conser 99.2 8.4E-08 1.8E-12 85.4 26.1 351 184-560 13-373 (459)
89 KOG0985 Vesicle coat protein c 99.1 1.7E-05 3.7E-10 82.5 46.8 533 16-622 795-1373(1666)
90 KOG3616 Selective LIM binding 99.1 3.3E-06 7.1E-11 84.6 39.0 446 72-591 458-931 (1636)
91 KOG3617 WD40 and TPR repeat-co 99.1 1.4E-06 3E-11 88.3 36.5 423 144-656 724-1189(1416)
92 PRK11189 lipoprotein NlpI; Pro 99.1 7.8E-08 1.7E-12 92.3 27.3 215 339-562 41-265 (296)
93 KOG1127 TPR repeat-containing 99.1 5E-06 1.1E-10 86.4 39.5 462 71-559 471-993 (1238)
94 KOG4340 Uncharacterized conser 99.1 7.7E-07 1.7E-11 79.4 29.2 291 149-454 13-335 (459)
95 PRK11189 lipoprotein NlpI; Pro 99.1 1.6E-07 3.6E-12 90.1 27.7 200 94-319 64-266 (296)
96 PRK04841 transcriptional regul 99.1 1.8E-05 3.9E-10 89.9 48.8 370 222-597 347-760 (903)
97 KOG3616 Selective LIM binding 99.1 1.4E-06 3E-11 87.2 33.7 188 436-657 739-927 (1636)
98 cd05804 StaR_like StaR_like; a 99.1 1.5E-06 3.2E-11 87.0 35.0 203 94-318 6-215 (355)
99 KOG0624 dsRNA-activated protei 99.1 1E-06 2.2E-11 80.3 28.8 331 91-493 35-370 (504)
100 cd05804 StaR_like StaR_like; a 99.0 1.8E-06 3.9E-11 86.4 34.2 96 291-387 116-214 (355)
101 KOG1914 mRNA cleavage and poly 99.0 2.8E-05 6.2E-10 75.6 40.6 427 141-597 15-501 (656)
102 KOG1125 TPR repeat-containing 99.0 9.1E-08 2E-12 93.3 20.5 250 370-625 296-564 (579)
103 KOG0624 dsRNA-activated protei 99.0 7.6E-06 1.6E-10 74.8 30.5 312 251-597 38-370 (504)
104 PRK04841 transcriptional regul 98.9 1.4E-05 3.1E-10 90.8 40.3 370 258-632 348-760 (903)
105 PF04733 Coatomer_E: Coatomer 98.9 1E-07 2.2E-12 90.0 17.5 82 479-561 182-264 (290)
106 PF04733 Coatomer_E: Coatomer 98.9 5.7E-08 1.2E-12 91.7 15.7 252 331-597 8-265 (290)
107 KOG2053 Mitochondrial inherita 98.8 0.00023 5.1E-09 73.8 50.0 226 106-355 21-257 (932)
108 KOG1914 mRNA cleavage and poly 98.8 0.00014 3E-09 71.0 42.4 427 91-561 17-500 (656)
109 KOG1128 Uncharacterized conser 98.8 4.9E-07 1.1E-11 90.7 20.2 222 391-632 395-616 (777)
110 KOG1125 TPR repeat-containing 98.8 1E-06 2.3E-11 86.2 21.9 258 299-588 295-562 (579)
111 KOG2053 Mitochondrial inherita 98.8 0.00036 7.8E-09 72.5 50.0 518 72-630 23-606 (932)
112 PLN02789 farnesyltranstransfer 98.8 9.8E-06 2.1E-10 77.7 27.2 218 408-630 51-300 (320)
113 PLN02789 farnesyltranstransfer 98.8 1E-05 2.2E-10 77.6 26.7 182 410-595 88-300 (320)
114 KOG1128 Uncharacterized conser 98.7 8.4E-06 1.8E-10 82.2 25.8 304 77-404 325-633 (777)
115 KOG1070 rRNA processing protei 98.7 1.4E-05 3E-10 86.1 27.1 238 129-375 1444-1687(1710)
116 KOG1070 rRNA processing protei 98.7 1.6E-05 3.4E-10 85.7 26.6 224 393-620 1457-1688(1710)
117 PRK10370 formate-dependent nit 98.7 7.3E-06 1.6E-10 73.1 20.5 119 512-632 52-173 (198)
118 PRK15179 Vi polysaccharide bio 98.6 1.5E-05 3.2E-10 84.5 25.6 239 393-653 27-270 (694)
119 TIGR03302 OM_YfiO outer membra 98.6 8.1E-06 1.7E-10 76.1 20.9 187 428-632 32-232 (235)
120 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 57.8 4.0 32 598-629 2-33 (34)
121 PF12854 PPR_1: PPR repeat 98.6 5.7E-08 1.2E-12 57.8 3.9 34 562-595 1-34 (34)
122 PRK15179 Vi polysaccharide bio 98.6 3.5E-05 7.6E-10 81.7 27.4 159 427-595 84-243 (694)
123 PRK10370 formate-dependent nit 98.6 1.1E-05 2.4E-10 72.0 19.5 124 477-603 52-178 (198)
124 COG5010 TadD Flp pilus assembl 98.6 2E-05 4.3E-10 69.9 20.0 159 433-594 70-228 (257)
125 TIGR03302 OM_YfiO outer membra 98.6 2E-05 4.3E-10 73.5 21.6 188 392-597 31-232 (235)
126 KOG3081 Vesicle coat complex C 98.5 6E-05 1.3E-09 66.8 21.8 49 514-562 188-236 (299)
127 COG5010 TadD Flp pilus assembl 98.5 3.9E-05 8.4E-10 68.1 20.6 161 468-631 70-230 (257)
128 KOG3081 Vesicle coat complex C 98.5 0.00011 2.4E-09 65.2 23.1 252 153-424 15-272 (299)
129 PRK15359 type III secretion sy 98.5 1.5E-05 3.2E-10 67.2 17.4 95 502-597 27-121 (144)
130 PRK15359 type III secretion sy 98.5 1.6E-05 3.5E-10 66.9 17.2 108 450-562 14-121 (144)
131 PRK14720 transcript cleavage f 98.5 0.00011 2.4E-09 78.7 26.5 132 396-544 118-268 (906)
132 PRK14720 transcript cleavage f 98.4 0.00024 5.2E-09 76.3 27.8 170 92-318 29-198 (906)
133 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.6E-10 67.4 14.8 95 501-596 19-113 (135)
134 COG4783 Putative Zn-dependent 98.4 0.00017 3.6E-09 69.9 23.5 138 439-597 316-454 (484)
135 COG4783 Putative Zn-dependent 98.4 0.0002 4.4E-09 69.4 23.9 164 465-649 308-473 (484)
136 KOG3060 Uncharacterized conser 98.4 0.00048 1E-08 60.8 23.4 163 432-597 55-220 (289)
137 TIGR02552 LcrH_SycD type III s 98.4 2.3E-05 4.9E-10 65.7 15.4 118 521-642 5-122 (135)
138 KOG3060 Uncharacterized conser 98.3 0.00071 1.5E-08 59.8 23.5 151 339-492 27-182 (289)
139 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.5E-09 62.0 15.6 117 511-629 23-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00023 4.9E-09 69.8 18.0 124 432-560 172-295 (395)
141 PF09976 TPR_21: Tetratricopep 98.1 0.00023 5E-09 60.2 15.3 89 151-241 53-143 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.9E-09 70.6 16.3 124 466-595 171-295 (395)
143 TIGR00756 PPR pentatricopeptid 98.0 1.5E-05 3.2E-10 48.3 4.3 31 571-601 3-33 (35)
144 TIGR00756 PPR pentatricopeptid 97.9 1.7E-05 3.7E-10 48.0 4.5 35 604-638 1-35 (35)
145 COG4700 Uncharacterized protei 97.9 0.0059 1.3E-07 51.4 20.2 133 461-595 86-220 (251)
146 KOG0550 Molecular chaperone (D 97.9 0.0093 2E-07 56.8 23.0 285 224-561 57-349 (486)
147 PF13812 PPR_3: Pentatricopept 97.9 2.6E-05 5.6E-10 46.8 4.4 32 570-601 3-34 (34)
148 PRK15363 pathogenicity island 97.8 0.00075 1.6E-08 55.9 13.3 96 501-597 37-132 (157)
149 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.2E-10 46.0 4.5 33 604-636 2-34 (34)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00087 1.9E-08 54.5 14.2 94 538-631 7-104 (119)
151 PRK10153 DNA-binding transcrip 97.8 0.0015 3.3E-08 67.3 18.3 63 532-596 419-481 (517)
152 cd00189 TPR Tetratricopeptide 97.8 0.00052 1.1E-08 53.0 11.9 91 538-630 5-95 (100)
153 PF10037 MRP-S27: Mitochondria 97.8 0.00058 1.2E-08 67.3 14.2 124 211-337 61-186 (429)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00079 1.7E-08 54.8 13.2 64 147-210 40-105 (119)
155 PF10037 MRP-S27: Mitochondria 97.8 0.00058 1.3E-08 67.3 14.0 120 496-615 63-185 (429)
156 PLN03088 SGT1, suppressor of 97.8 0.00081 1.8E-08 66.4 15.2 87 509-596 12-98 (356)
157 cd00189 TPR Tetratricopeptide 97.8 0.00061 1.3E-08 52.6 11.7 96 501-597 2-97 (100)
158 PF07079 DUF1347: Protein of u 97.7 0.05 1.1E-06 52.8 46.9 150 98-263 10-179 (549)
159 PF05843 Suf: Suppressor of fo 97.7 0.00054 1.2E-08 65.1 12.6 131 465-597 2-136 (280)
160 PRK02603 photosystem I assembl 97.7 0.0025 5.3E-08 55.8 15.8 85 501-586 37-124 (172)
161 KOG0553 TPR repeat-containing 97.7 0.00047 1E-08 62.7 11.2 129 472-603 89-221 (304)
162 PRK15363 pathogenicity island 97.7 0.00094 2E-08 55.4 11.8 97 94-209 35-131 (157)
163 PLN03088 SGT1, suppressor of 97.7 0.0015 3.2E-08 64.5 15.5 89 473-562 11-99 (356)
164 PF08579 RPM2: Mitochondrial r 97.6 0.00083 1.8E-08 51.4 10.0 73 190-262 34-115 (120)
165 KOG0553 TPR repeat-containing 97.6 0.0008 1.7E-08 61.3 11.6 130 437-568 89-221 (304)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.6E-09 55.1 5.6 80 512-593 2-83 (84)
167 KOG0550 Molecular chaperone (D 97.6 0.067 1.5E-06 51.2 24.5 277 152-458 55-350 (486)
168 PRK10866 outer membrane biogen 97.6 0.023 4.9E-07 52.6 21.2 56 539-594 181-238 (243)
169 PF14938 SNAP: Soluble NSF att 97.6 0.0073 1.6E-07 57.7 18.5 170 94-276 35-221 (282)
170 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.4E-08 56.1 13.6 95 533-628 35-138 (168)
171 PF05843 Suf: Suppressor of fo 97.6 0.0021 4.5E-08 61.1 14.5 145 430-578 2-150 (280)
172 PF14938 SNAP: Soluble NSF att 97.6 0.013 2.9E-07 55.9 20.0 27 148-174 37-63 (282)
173 PF12895 Apc3: Anaphase-promot 97.6 0.00019 4.1E-09 54.0 5.9 81 546-628 2-83 (84)
174 PRK10153 DNA-binding transcrip 97.6 0.0051 1.1E-07 63.5 18.0 123 515-641 358-489 (517)
175 PF12688 TPR_5: Tetratrico pep 97.6 0.0051 1.1E-07 49.2 14.0 106 538-649 6-117 (120)
176 PRK02603 photosystem I assembl 97.5 0.0052 1.1E-07 53.8 15.6 89 466-554 37-127 (172)
177 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.3E-09 42.9 3.3 26 571-596 3-28 (31)
178 PF08579 RPM2: Mitochondrial r 97.5 0.0018 3.9E-08 49.6 10.5 77 574-650 31-116 (120)
179 KOG1130 Predicted G-alpha GTPa 97.5 0.0017 3.6E-08 61.5 12.5 132 501-632 197-344 (639)
180 KOG1538 Uncharacterized conser 97.5 0.016 3.6E-07 58.3 19.8 101 147-276 557-657 (1081)
181 CHL00033 ycf3 photosystem I as 97.5 0.002 4.4E-08 56.2 12.7 78 467-544 38-117 (168)
182 COG4235 Cytochrome c biogenesi 97.5 0.006 1.3E-07 56.1 15.8 112 519-632 142-256 (287)
183 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.7E-09 42.6 3.3 31 604-634 1-31 (31)
184 PRK10866 outer membrane biogen 97.5 0.033 7.2E-07 51.5 20.9 175 366-560 39-239 (243)
185 COG4700 Uncharacterized protei 97.5 0.041 8.8E-07 46.5 18.8 131 213-347 86-216 (251)
186 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.5E-07 47.2 14.3 54 475-528 12-67 (120)
187 KOG2041 WD40 repeat protein [G 97.4 0.21 4.6E-06 51.2 33.7 204 178-419 689-903 (1189)
188 KOG2041 WD40 repeat protein [G 97.4 0.22 4.8E-06 51.0 28.5 214 91-349 689-903 (1189)
189 COG4235 Cytochrome c biogenesi 97.3 0.015 3.3E-07 53.6 15.9 99 463-562 155-256 (287)
190 PF13525 YfiO: Outer membrane 97.3 0.032 7E-07 50.2 18.2 70 93-177 4-73 (203)
191 PF13525 YfiO: Outer membrane 97.3 0.045 9.8E-07 49.3 19.0 58 368-425 14-73 (203)
192 PF13432 TPR_16: Tetratricopep 97.3 0.001 2.2E-08 47.0 6.7 54 542-596 6-59 (65)
193 PF06239 ECSIT: Evolutionarily 97.3 0.0032 6.9E-08 54.9 10.5 85 288-372 46-151 (228)
194 PF13414 TPR_11: TPR repeat; P 97.3 0.0014 3E-08 47.0 7.0 63 533-596 3-66 (69)
195 PF14559 TPR_19: Tetratricopep 97.2 0.0012 2.6E-08 47.2 6.5 50 512-561 4-53 (68)
196 PF07079 DUF1347: Protein of u 97.2 0.23 4.9E-06 48.4 44.6 207 429-645 298-532 (549)
197 KOG2796 Uncharacterized conser 97.2 0.14 3E-06 46.0 19.9 131 432-562 180-315 (366)
198 PF06239 ECSIT: Evolutionarily 97.2 0.0061 1.3E-07 53.2 11.5 105 143-266 44-153 (228)
199 KOG2796 Uncharacterized conser 97.2 0.11 2.3E-06 46.7 19.0 142 182-329 178-324 (366)
200 KOG1258 mRNA processing protei 97.1 0.36 7.9E-06 49.0 36.0 186 428-616 296-488 (577)
201 PF13432 TPR_16: Tetratricopep 97.1 0.0019 4.1E-08 45.6 6.7 55 154-209 5-59 (65)
202 PF14559 TPR_19: Tetratricopep 97.1 0.0022 4.8E-08 45.8 7.0 51 545-596 3-53 (68)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.31 6.6E-06 47.5 37.6 447 91-578 39-545 (660)
204 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.3E-08 46.2 6.5 63 146-209 3-66 (69)
205 KOG1130 Predicted G-alpha GTPa 97.1 0.0041 9E-08 58.9 9.8 286 225-527 26-343 (639)
206 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.42 9.1E-06 46.6 40.6 86 140-228 36-121 (660)
207 KOG1538 Uncharacterized conser 96.9 0.19 4.2E-06 51.0 19.5 93 287-384 554-657 (1081)
208 PRK10803 tol-pal system protei 96.8 0.031 6.8E-07 52.1 13.6 49 512-560 156-207 (263)
209 PRK10803 tol-pal system protei 96.8 0.029 6.2E-07 52.4 13.2 98 465-562 144-246 (263)
210 COG4105 ComL DNA uptake lipopr 96.8 0.38 8.3E-06 43.6 19.6 84 94-192 34-117 (254)
211 PF03704 BTAD: Bacterial trans 96.8 0.033 7.1E-07 47.2 12.2 70 291-361 64-138 (146)
212 PF04840 Vps16_C: Vps16, C-ter 96.7 0.62 1.3E-05 45.0 30.0 23 96-118 2-24 (319)
213 PF13371 TPR_9: Tetratricopept 96.7 0.013 2.8E-07 42.5 8.2 54 508-561 4-57 (73)
214 PRK15331 chaperone protein Sic 96.7 0.069 1.5E-06 44.8 12.8 88 508-596 46-133 (165)
215 KOG2114 Vacuolar assembly/sort 96.7 1.2 2.5E-05 47.3 27.9 183 145-351 333-517 (933)
216 PF13281 DUF4071: Domain of un 96.6 0.37 8E-06 47.0 19.2 80 256-335 146-228 (374)
217 KOG2114 Vacuolar assembly/sort 96.6 1.3 2.8E-05 47.0 25.8 179 218-420 336-516 (933)
218 PRK15331 chaperone protein Sic 96.6 0.26 5.5E-06 41.5 15.6 87 474-561 47-133 (165)
219 PF10345 Cohesin_load: Cohesin 96.5 1.6 3.5E-05 47.0 38.8 190 75-277 38-251 (608)
220 PF13371 TPR_9: Tetratricopept 96.5 0.021 4.6E-07 41.4 8.0 54 542-596 4-57 (73)
221 COG3898 Uncharacterized membra 96.4 0.94 2E-05 43.5 32.0 311 71-423 66-392 (531)
222 COG3898 Uncharacterized membra 96.4 0.94 2E-05 43.5 33.0 280 337-632 97-392 (531)
223 PF03704 BTAD: Bacterial trans 96.4 0.023 4.9E-07 48.1 8.8 54 506-559 69-122 (146)
224 PF13424 TPR_12: Tetratricopep 96.4 0.014 3E-07 43.0 6.4 62 534-595 6-73 (78)
225 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.4E-05 43.3 30.9 106 468-592 181-286 (319)
226 PF13424 TPR_12: Tetratricopep 96.3 0.015 3.2E-07 42.9 6.3 64 568-631 5-74 (78)
227 PF13281 DUF4071: Domain of un 96.3 1.3 2.7E-05 43.4 21.1 91 403-493 150-255 (374)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.079 1.7E-06 52.2 12.3 66 497-562 73-141 (453)
229 PF09205 DUF1955: Domain of un 96.1 0.54 1.2E-05 37.5 14.2 59 505-563 92-150 (161)
230 COG1729 Uncharacterized protei 96.1 0.16 3.5E-06 46.3 12.7 95 101-210 148-244 (262)
231 PF12921 ATP13: Mitochondrial 96.1 0.1 2.2E-06 42.3 10.5 82 532-613 1-98 (126)
232 COG3118 Thioredoxin domain-con 96.0 0.61 1.3E-05 43.2 16.1 49 511-559 146-194 (304)
233 KOG0543 FKBP-type peptidyl-pro 96.0 0.12 2.7E-06 49.7 12.2 140 470-632 214-355 (397)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.13 2.7E-06 50.9 12.6 65 462-528 73-141 (453)
235 COG3118 Thioredoxin domain-con 96.0 1.2 2.6E-05 41.3 17.9 121 152-276 140-261 (304)
236 PF13512 TPR_18: Tetratricopep 95.9 0.22 4.8E-06 40.8 11.7 87 93-194 9-95 (142)
237 COG4105 ComL DNA uptake lipopr 95.9 1.3 2.9E-05 40.2 21.0 55 371-425 46-102 (254)
238 PF13512 TPR_18: Tetratricopep 95.8 0.35 7.5E-06 39.7 12.3 72 508-579 19-93 (142)
239 KOG1920 IkappaB kinase complex 95.8 2.9 6.3E-05 46.4 22.3 28 325-352 791-820 (1265)
240 PF10300 DUF3808: Protein of u 95.8 0.82 1.8E-05 47.1 18.2 162 469-631 193-375 (468)
241 PRK11906 transcriptional regul 95.8 1.5 3.2E-05 43.7 18.6 112 514-630 319-434 (458)
242 KOG0543 FKBP-type peptidyl-pro 95.7 0.2 4.3E-06 48.3 12.2 140 435-597 214-355 (397)
243 PF09205 DUF1955: Domain of un 95.7 0.8 1.7E-05 36.6 13.3 61 468-529 90-150 (161)
244 KOG4555 TPR repeat-containing 95.7 0.42 9.2E-06 38.0 11.7 94 100-211 49-145 (175)
245 KOG4555 TPR repeat-containing 95.7 0.28 6.1E-06 38.9 10.6 91 508-598 52-145 (175)
246 KOG1258 mRNA processing protei 95.6 3.1 6.8E-05 42.6 34.7 422 180-652 44-489 (577)
247 smart00299 CLH Clathrin heavy 95.6 0.77 1.7E-05 38.4 14.5 125 504-650 12-137 (140)
248 COG1729 Uncharacterized protei 95.5 0.27 6E-06 44.9 11.9 86 512-597 154-244 (262)
249 KOG1920 IkappaB kinase complex 95.5 5.6 0.00012 44.3 24.0 107 502-627 942-1050(1265)
250 PF10300 DUF3808: Protein of u 95.4 1.4 3E-05 45.5 18.2 27 397-423 191-217 (468)
251 KOG1585 Protein required for f 95.4 1.9 4.1E-05 38.7 17.2 206 147-381 32-249 (308)
252 COG3629 DnrI DNA-binding trans 95.4 0.079 1.7E-06 49.2 8.2 78 147-225 154-236 (280)
253 PF04184 ST7: ST7 protein; In 95.4 1.8 3.9E-05 43.3 17.5 58 504-561 264-323 (539)
254 PRK11906 transcriptional regul 95.4 1.3 2.9E-05 44.0 16.8 134 514-652 273-422 (458)
255 COG0457 NrfG FOG: TPR repeat [ 95.3 2.3 4.9E-05 39.0 30.3 199 395-596 60-264 (291)
256 PF12921 ATP13: Mitochondrial 95.3 0.21 4.6E-06 40.5 9.5 54 281-334 44-98 (126)
257 PF08631 SPO22: Meiosis protei 95.1 3.2 6.9E-05 39.5 25.8 62 396-458 86-150 (278)
258 KOG3941 Intermediate in Toll s 95.1 0.4 8.8E-06 43.6 11.3 45 233-277 140-185 (406)
259 KOG2610 Uncharacterized conser 95.0 0.64 1.4E-05 43.5 12.6 153 405-560 114-274 (491)
260 PF13428 TPR_14: Tetratricopep 95.0 0.078 1.7E-06 33.7 5.0 40 147-187 2-41 (44)
261 PF13428 TPR_14: Tetratricopep 95.0 0.098 2.1E-06 33.2 5.4 36 503-538 5-40 (44)
262 COG0457 NrfG FOG: TPR repeat [ 94.9 2.9 6.4E-05 38.3 30.3 222 407-632 36-265 (291)
263 PF04053 Coatomer_WDAD: Coatom 94.9 1.1 2.3E-05 45.6 15.3 156 262-454 272-427 (443)
264 PF04184 ST7: ST7 protein; In 94.9 2.2 4.8E-05 42.7 16.7 61 216-276 259-320 (539)
265 KOG2280 Vacuolar assembly/sort 94.9 6 0.00013 41.7 31.5 118 157-276 400-532 (829)
266 PF10602 RPN7: 26S proteasome 94.9 0.82 1.8E-05 39.9 12.8 120 533-652 36-170 (177)
267 PF04053 Coatomer_WDAD: Coatom 94.9 1 2.3E-05 45.7 15.1 158 154-348 269-426 (443)
268 KOG2610 Uncharacterized conser 94.7 1 2.2E-05 42.3 13.1 118 156-276 113-234 (491)
269 KOG3941 Intermediate in Toll s 94.7 0.24 5.3E-06 45.0 9.0 86 288-373 66-172 (406)
270 COG4649 Uncharacterized protei 94.6 2.4 5.3E-05 35.8 15.0 127 510-636 69-200 (221)
271 PRK11619 lytic murein transgly 94.5 8.5 0.00018 41.5 37.6 403 35-489 36-464 (644)
272 PF08631 SPO22: Meiosis protei 94.4 4.8 0.00011 38.3 26.5 163 466-630 86-273 (278)
273 PF13431 TPR_17: Tetratricopep 94.3 0.059 1.3E-06 31.9 2.9 32 522-553 2-33 (34)
274 KOG1585 Protein required for f 94.1 4.2 9.2E-05 36.6 18.9 215 90-347 27-250 (308)
275 PF13170 DUF4003: Protein of u 94.0 6 0.00013 37.8 19.4 130 447-578 80-227 (297)
276 COG2909 MalT ATP-dependent tra 94.0 11 0.00024 40.8 25.1 222 404-628 425-684 (894)
277 smart00299 CLH Clathrin heavy 93.8 3.4 7.4E-05 34.4 15.6 41 152-193 13-53 (140)
278 COG4649 Uncharacterized protei 93.6 4 8.8E-05 34.6 15.1 120 157-276 69-192 (221)
279 KOG1941 Acetylcholine receptor 93.5 1.5 3.2E-05 41.7 11.8 229 404-632 16-275 (518)
280 COG3629 DnrI DNA-binding trans 93.3 1.1 2.3E-05 41.9 10.6 78 500-577 154-236 (280)
281 PF07035 Mic1: Colon cancer-as 93.3 4.8 0.0001 34.4 16.4 135 167-318 15-149 (167)
282 KOG1941 Acetylcholine receptor 93.1 8.5 0.00018 36.9 17.9 203 325-527 44-274 (518)
283 PF07035 Mic1: Colon cancer-as 92.7 5.7 0.00012 33.9 15.4 101 237-350 15-115 (167)
284 KOG1550 Extracellular protein 92.7 16 0.00035 38.8 26.3 178 305-494 228-427 (552)
285 PF09613 HrpB1_HrpK: Bacterial 92.2 6.4 0.00014 33.2 13.5 65 498-562 6-73 (160)
286 KOG0890 Protein kinase of the 92.1 36 0.00077 41.6 25.9 314 221-562 1388-1731(2382)
287 PF09613 HrpB1_HrpK: Bacterial 91.9 7 0.00015 33.0 14.5 20 510-529 55-74 (160)
288 COG4785 NlpI Lipoprotein NlpI, 91.8 8.9 0.00019 33.9 15.7 159 429-597 99-266 (297)
289 PF13176 TPR_7: Tetratricopept 91.7 0.45 9.8E-06 28.5 4.2 24 571-594 2-25 (36)
290 COG1747 Uncharacterized N-term 91.6 17 0.00036 36.8 23.4 219 107-335 27-250 (711)
291 PF11207 DUF2989: Protein of u 91.5 3.7 8E-05 36.0 11.0 56 145-201 140-198 (203)
292 PF10602 RPN7: 26S proteasome 91.4 4.6 0.0001 35.2 11.9 94 183-276 38-138 (177)
293 PF13176 TPR_7: Tetratricopept 91.1 0.56 1.2E-05 28.1 4.2 27 535-561 1-27 (36)
294 KOG1550 Extracellular protein 90.9 25 0.00054 37.4 27.0 274 339-632 227-538 (552)
295 PF13431 TPR_17: Tetratricopep 90.3 0.44 9.6E-06 28.1 3.1 26 141-166 8-33 (34)
296 KOG2066 Vacuolar assembly/sort 89.9 31 0.00067 37.0 26.4 169 152-352 362-533 (846)
297 PF00515 TPR_1: Tetratricopept 89.2 0.98 2.1E-05 26.4 4.2 26 571-596 4-29 (34)
298 PF00515 TPR_1: Tetratricopept 89.0 1.1 2.3E-05 26.2 4.2 32 604-637 2-33 (34)
299 PF06552 TOM20_plant: Plant sp 88.9 5.4 0.00012 34.2 9.6 28 518-545 54-81 (186)
300 COG2976 Uncharacterized protei 88.8 15 0.00033 32.0 14.7 90 539-633 95-189 (207)
301 COG2976 Uncharacterized protei 88.5 16 0.00035 31.9 15.1 129 466-598 56-189 (207)
302 KOG0276 Vesicle coat complex C 88.4 5.4 0.00012 40.9 10.7 148 264-454 599-746 (794)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 4.1 8.8E-05 30.7 7.4 61 549-610 23-83 (103)
304 PF13170 DUF4003: Protein of u 88.3 24 0.00053 33.8 20.7 130 481-612 79-226 (297)
305 KOG2066 Vacuolar assembly/sort 88.3 40 0.00087 36.2 27.4 72 297-374 364-438 (846)
306 COG4785 NlpI Lipoprotein NlpI, 88.3 18 0.00039 32.1 17.9 167 141-318 94-266 (297)
307 TIGR02561 HrpB1_HrpK type III 88.2 14 0.0003 30.7 13.2 52 512-563 23-74 (153)
308 PF10345 Cohesin_load: Cohesin 88.1 43 0.00092 36.3 43.2 197 145-351 29-252 (608)
309 PF07575 Nucleopor_Nup85: Nup8 88.0 37 0.00081 36.3 17.8 26 146-172 149-174 (566)
310 KOG4570 Uncharacterized conser 88.0 6.7 0.00014 36.8 10.2 102 495-597 60-164 (418)
311 PF07719 TPR_2: Tetratricopept 87.7 1.4 3.1E-05 25.6 4.2 26 571-596 4-29 (34)
312 KOG4234 TPR repeat-containing 87.7 7.7 0.00017 33.8 9.8 90 473-562 104-197 (271)
313 PF07719 TPR_2: Tetratricopept 87.7 1.4 3E-05 25.6 4.2 28 534-561 2-29 (34)
314 PF02284 COX5A: Cytochrome c o 87.5 8.4 0.00018 29.4 8.7 47 551-597 28-74 (108)
315 KOG4648 Uncharacterized conser 87.5 3.5 7.6E-05 38.9 8.3 49 439-489 107-156 (536)
316 KOG4234 TPR repeat-containing 87.4 9.2 0.0002 33.4 10.0 85 510-596 106-196 (271)
317 PRK11619 lytic murein transgly 87.0 50 0.0011 35.8 37.3 412 129-569 82-512 (644)
318 COG3947 Response regulator con 86.8 27 0.00059 32.6 14.7 44 75-121 150-193 (361)
319 PF02284 COX5A: Cytochrome c o 86.2 13 0.00028 28.4 9.5 60 482-541 28-87 (108)
320 PRK09687 putative lyase; Provi 86.2 32 0.00068 32.8 26.8 137 498-649 141-278 (280)
321 KOG4570 Uncharacterized conser 86.2 9.3 0.0002 35.9 10.1 99 428-528 63-164 (418)
322 KOG4648 Uncharacterized conser 86.0 5.3 0.00012 37.8 8.6 93 471-567 104-197 (536)
323 KOG0403 Neoplastic transformat 85.8 40 0.00086 33.6 17.6 60 433-493 513-572 (645)
324 KOG2280 Vacuolar assembly/sort 85.7 55 0.0012 35.1 36.8 101 209-314 425-532 (829)
325 COG1747 Uncharacterized N-term 85.4 46 0.00099 33.9 25.5 92 395-491 67-158 (711)
326 PF13374 TPR_10: Tetratricopep 84.1 2.8 6E-05 25.7 4.5 26 570-595 4-29 (42)
327 COG4455 ImpE Protein of avirul 84.1 7.3 0.00016 34.5 8.0 58 504-561 6-63 (273)
328 PF13374 TPR_10: Tetratricopep 83.6 3 6.4E-05 25.6 4.4 29 533-561 2-30 (42)
329 PF11207 DUF2989: Protein of u 83.5 13 0.00028 32.7 9.4 45 264-308 153-197 (203)
330 COG4455 ImpE Protein of avirul 83.3 8.4 0.00018 34.1 8.1 78 219-298 4-81 (273)
331 KOG2063 Vacuolar assembly/sort 83.1 83 0.0018 35.1 18.7 116 148-263 506-638 (877)
332 KOG0276 Vesicle coat complex C 82.2 22 0.00048 36.8 11.6 131 432-594 617-747 (794)
333 KOG2471 TPR repeat-containing 81.8 63 0.0014 32.7 18.4 41 336-376 29-69 (696)
334 PF07721 TPR_4: Tetratricopept 81.7 1.9 4.1E-05 23.4 2.5 23 148-170 3-25 (26)
335 PF06552 TOM20_plant: Plant sp 81.6 17 0.00036 31.4 9.1 27 550-578 97-123 (186)
336 KOG2062 26S proteasome regulat 81.2 83 0.0018 33.8 34.6 33 283-318 207-239 (929)
337 PF02259 FAT: FAT domain; Int 80.9 61 0.0013 32.0 24.4 65 428-492 145-212 (352)
338 TIGR03504 FimV_Cterm FimV C-te 80.6 3.7 8E-05 25.9 3.8 24 574-597 5-28 (44)
339 COG3947 Response regulator con 80.3 52 0.0011 30.9 17.1 58 537-595 283-340 (361)
340 TIGR02561 HrpB1_HrpK type III 79.9 34 0.00074 28.5 12.5 91 544-638 21-112 (153)
341 KOG4642 Chaperone-dependent E3 79.5 43 0.00093 30.4 11.2 119 474-594 20-143 (284)
342 PF02259 FAT: FAT domain; Int 79.3 68 0.0015 31.7 24.6 191 365-561 4-212 (352)
343 KOG2297 Predicted translation 79.0 58 0.0013 30.7 19.7 20 464-483 321-340 (412)
344 KOG1464 COP9 signalosome, subu 78.9 54 0.0012 30.2 18.3 49 73-121 42-92 (440)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 78.8 26 0.00057 26.6 9.7 62 479-540 22-83 (103)
346 PF13181 TPR_8: Tetratricopept 78.3 6 0.00013 22.9 4.2 28 148-175 3-30 (34)
347 PF13181 TPR_8: Tetratricopept 78.0 7 0.00015 22.6 4.4 26 571-596 4-29 (34)
348 KOG2396 HAT (Half-A-TPR) repea 77.9 85 0.0019 32.0 41.5 107 522-632 448-559 (568)
349 TIGR03504 FimV_Cterm FimV C-te 77.8 5.9 0.00013 25.0 4.1 25 152-176 5-29 (44)
350 PF07721 TPR_4: Tetratricopept 77.6 3.9 8.5E-05 22.2 2.9 16 575-590 8-23 (26)
351 KOG4077 Cytochrome c oxidase, 76.9 19 0.00042 28.7 7.4 47 551-597 67-113 (149)
352 PF13174 TPR_6: Tetratricopept 76.0 4.8 0.0001 23.0 3.3 26 150-175 4-29 (33)
353 PF13929 mRNA_stabil: mRNA sta 75.7 72 0.0016 30.1 16.2 51 534-584 203-254 (292)
354 PF00637 Clathrin: Region in C 75.5 1.1 2.4E-05 37.6 0.5 83 152-241 13-95 (143)
355 PF13174 TPR_6: Tetratricopept 75.0 6.2 0.00013 22.5 3.6 22 575-596 7-28 (33)
356 KOG2396 HAT (Half-A-TPR) repea 74.8 1E+02 0.0023 31.4 41.4 242 343-597 301-559 (568)
357 PF07163 Pex26: Pex26 protein; 74.3 45 0.00098 31.1 10.2 85 436-522 90-181 (309)
358 KOG2471 TPR repeat-containing 73.5 1.1E+02 0.0024 31.1 15.9 36 509-544 345-380 (696)
359 PF04097 Nic96: Nup93/Nic96; 72.8 1.5E+02 0.0032 32.2 24.3 220 149-388 114-356 (613)
360 TIGR02508 type_III_yscG type I 72.3 41 0.0009 25.7 8.4 49 543-597 49-97 (115)
361 PF04910 Tcf25: Transcriptiona 72.2 1.1E+02 0.0023 30.5 18.1 119 91-209 37-167 (360)
362 PF13929 mRNA_stabil: mRNA sta 71.5 93 0.002 29.4 16.6 117 264-383 141-262 (292)
363 KOG0890 Protein kinase of the 71.4 2.7E+02 0.0059 34.8 36.5 152 151-313 1388-1542(2382)
364 PF00637 Clathrin: Region in C 71.3 3.1 6.6E-05 34.9 2.3 83 187-276 13-95 (143)
365 PRK09687 putative lyase; Provi 71.2 97 0.0021 29.5 29.1 73 532-613 205-277 (280)
366 KOG0687 26S proteasome regulat 71.1 1E+02 0.0022 29.6 16.2 116 515-632 84-210 (393)
367 PRK15180 Vi polysaccharide bio 70.3 1.3E+02 0.0028 30.5 30.3 105 142-248 319-423 (831)
368 COG2909 MalT ATP-dependent tra 70.0 1.8E+02 0.004 32.2 31.4 226 299-524 425-684 (894)
369 PF07163 Pex26: Pex26 protein; 69.2 70 0.0015 29.9 10.2 87 366-452 90-181 (309)
370 KOG4507 Uncharacterized conser 68.7 24 0.00052 36.4 7.9 86 477-562 620-705 (886)
371 KOG1464 COP9 signalosome, subu 68.7 99 0.0022 28.6 22.3 50 302-351 40-92 (440)
372 PF10579 Rapsyn_N: Rapsyn N-te 66.3 22 0.00047 25.8 5.2 46 580-625 18-65 (80)
373 PF10579 Rapsyn_N: Rapsyn N-te 65.3 20 0.00044 26.0 4.9 48 545-592 18-67 (80)
374 KOG0376 Serine-threonine phosp 65.3 16 0.00034 36.7 5.9 104 473-580 13-117 (476)
375 KOG4507 Uncharacterized conser 64.9 39 0.00084 35.0 8.5 114 496-611 604-718 (886)
376 COG5159 RPN6 26S proteasome re 64.7 1.2E+02 0.0027 28.3 17.6 50 400-449 9-65 (421)
377 PF14853 Fis1_TPR_C: Fis1 C-te 64.7 23 0.0005 23.5 4.8 23 574-596 7-29 (53)
378 PF08424 NRDE-2: NRDE-2, neces 64.3 1.5E+02 0.0032 29.0 18.1 118 481-599 48-185 (321)
379 PF14689 SPOB_a: Sensor_kinase 63.9 25 0.00053 24.3 5.1 30 602-631 22-51 (62)
380 smart00028 TPR Tetratricopepti 63.9 15 0.00032 20.0 3.8 23 573-595 6-28 (34)
381 PHA02875 ankyrin repeat protei 63.4 1.8E+02 0.0038 29.6 16.7 11 552-562 299-309 (413)
382 PHA02875 ankyrin repeat protei 63.3 1.8E+02 0.0039 29.6 17.7 18 258-275 72-89 (413)
383 PF00244 14-3-3: 14-3-3 protei 63.1 1.3E+02 0.0027 27.8 11.3 58 434-491 6-64 (236)
384 KOG2063 Vacuolar assembly/sort 62.8 2.6E+02 0.0057 31.4 18.4 37 439-475 601-637 (877)
385 PF11848 DUF3368: Domain of un 62.7 33 0.00071 22.2 5.2 33 614-646 13-45 (48)
386 PF04097 Nic96: Nup93/Nic96; 62.6 2.3E+02 0.005 30.7 26.6 18 507-524 422-439 (613)
387 PRK15180 Vi polysaccharide bio 62.0 1.9E+02 0.0041 29.4 30.8 122 153-277 296-417 (831)
388 KOG4077 Cytochrome c oxidase, 61.7 60 0.0013 26.1 7.2 49 483-531 68-116 (149)
389 PF03474 DMA: DMRTA motif; In 61.1 22 0.00048 21.6 3.8 32 50-81 7-38 (39)
390 KOG4642 Chaperone-dependent E3 61.0 1.3E+02 0.0029 27.4 10.9 117 439-559 20-143 (284)
391 COG5187 RPN7 26S proteasome re 60.4 1.5E+02 0.0033 27.9 14.3 100 532-631 114-220 (412)
392 KOG2422 Uncharacterized conser 59.9 2.3E+02 0.0049 29.7 15.1 169 73-245 253-448 (665)
393 KOG0376 Serine-threonine phosp 58.3 24 0.00052 35.5 5.8 106 506-615 11-117 (476)
394 PRK10941 hypothetical protein; 58.1 1.6E+02 0.0034 27.8 11.0 60 503-562 185-244 (269)
395 PF08424 NRDE-2: NRDE-2, neces 57.9 1.9E+02 0.0041 28.2 18.3 119 515-634 47-185 (321)
396 TIGR02508 type_III_yscG type I 57.4 87 0.0019 24.1 8.7 58 259-326 47-104 (115)
397 PF00244 14-3-3: 14-3-3 protei 57.3 1.5E+02 0.0032 27.4 10.5 60 150-209 5-65 (236)
398 PF14561 TPR_20: Tetratricopep 56.9 83 0.0018 23.7 9.1 62 522-583 11-73 (90)
399 PF10366 Vps39_1: Vacuolar sor 56.2 83 0.0018 24.7 7.5 26 571-596 42-67 (108)
400 KOG1586 Protein required for f 56.1 1.6E+02 0.0035 26.9 21.2 57 475-531 165-227 (288)
401 PF11848 DUF3368: Domain of un 56.0 47 0.001 21.4 5.0 33 157-189 13-45 (48)
402 KOG2908 26S proteasome regulat 55.4 1.9E+02 0.0041 28.0 10.7 90 535-624 77-178 (380)
403 PF14689 SPOB_a: Sensor_kinase 55.2 35 0.00075 23.5 4.6 23 329-351 28-50 (62)
404 COG0790 FOG: TPR repeat, SEL1 55.1 2E+02 0.0043 27.5 22.5 24 583-606 252-275 (292)
405 PF11663 Toxin_YhaV: Toxin wit 55.1 14 0.00031 29.9 3.0 34 613-648 105-138 (140)
406 COG0790 FOG: TPR repeat, SEL1 54.6 2E+02 0.0043 27.5 23.6 85 551-642 173-276 (292)
407 KOG0403 Neoplastic transformat 53.5 2.5E+02 0.0055 28.3 24.1 74 503-580 513-586 (645)
408 PF04190 DUF410: Protein of un 53.3 2E+02 0.0043 27.0 19.3 159 158-353 2-170 (260)
409 PF07575 Nucleopor_Nup85: Nup8 52.6 3.3E+02 0.0071 29.3 18.0 25 216-241 149-173 (566)
410 smart00386 HAT HAT (Half-A-TPR 52.4 35 0.00076 19.0 3.9 24 515-538 3-26 (33)
411 PF14561 TPR_20: Tetratricopep 51.9 1E+02 0.0022 23.2 7.7 55 141-195 17-72 (90)
412 PF09477 Type_III_YscG: Bacter 51.1 1.2E+02 0.0025 23.7 8.7 14 197-210 22-35 (116)
413 cd00280 TRFH Telomeric Repeat 50.6 1.1E+02 0.0024 26.6 7.7 22 575-596 118-139 (200)
414 PF11846 DUF3366: Domain of un 50.3 37 0.00081 30.1 5.5 53 70-122 120-172 (193)
415 PF02845 CUE: CUE domain; Int 50.2 43 0.00093 20.8 4.1 33 49-81 6-38 (42)
416 smart00546 CUE Domain that may 49.9 45 0.00097 20.8 4.2 33 49-81 7-39 (43)
417 PF12862 Apc5: Anaphase-promot 49.1 1.2E+02 0.0025 23.1 7.9 22 574-595 47-68 (94)
418 PF11846 DUF3366: Domain of un 48.0 85 0.0019 27.8 7.4 32 565-596 141-172 (193)
419 PF09986 DUF2225: Uncharacteri 47.9 2.2E+02 0.0047 25.9 11.5 23 610-632 172-194 (214)
420 KOG0991 Replication factor C, 47.7 2.2E+02 0.0048 26.0 10.7 115 64-187 164-279 (333)
421 PF09477 Type_III_YscG: Bacter 47.5 1.4E+02 0.0029 23.4 9.0 15 580-594 81-95 (116)
422 cd00280 TRFH Telomeric Repeat 47.3 1.4E+02 0.003 26.1 7.7 43 608-653 116-158 (200)
423 PF12862 Apc5: Anaphase-promot 47.3 82 0.0018 23.9 6.2 18 299-316 51-68 (94)
424 KOG1308 Hsp70-interacting prot 47.2 13 0.00029 35.4 2.1 89 476-565 126-214 (377)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 46.6 1.6E+02 0.0034 23.9 9.4 42 551-592 81-123 (126)
426 COG0735 Fur Fe2+/Zn2+ uptake r 46.4 1.1E+02 0.0024 25.6 7.3 59 593-652 11-69 (145)
427 PRK13342 recombination factor 46.4 3.4E+02 0.0073 27.7 20.4 36 547-582 244-279 (413)
428 PF13762 MNE1: Mitochondrial s 45.7 1.8E+02 0.0039 24.3 10.2 81 183-263 41-127 (145)
429 PF11663 Toxin_YhaV: Toxin wit 45.6 26 0.00057 28.4 3.2 29 229-259 108-136 (140)
430 KOG1308 Hsp70-interacting prot 44.9 17 0.00038 34.7 2.4 91 439-531 124-214 (377)
431 PF04762 IKI3: IKI3 family; I 44.5 3.1E+02 0.0067 31.6 12.4 113 360-490 813-927 (928)
432 cd08819 CARD_MDA5_2 Caspase ac 44.4 1.3E+02 0.0029 22.4 6.7 14 443-456 50-63 (88)
433 PF12968 DUF3856: Domain of Un 44.3 90 0.0019 24.9 5.7 60 106-172 21-81 (144)
434 PF09670 Cas_Cas02710: CRISPR- 44.1 2E+02 0.0043 28.9 9.9 121 153-274 138-264 (379)
435 PF11838 ERAP1_C: ERAP1-like C 43.5 3.2E+02 0.0069 26.5 18.9 81 162-245 146-230 (324)
436 PF04762 IKI3: IKI3 family; I 43.3 2.9E+02 0.0064 31.7 12.0 30 532-561 811-842 (928)
437 KOG2422 Uncharacterized conser 43.2 4.2E+02 0.0092 27.9 15.4 136 182-317 285-447 (665)
438 PRK10941 hypothetical protein; 43.0 3E+02 0.0064 26.1 10.9 62 535-597 183-244 (269)
439 PF14853 Fis1_TPR_C: Fis1 C-te 42.4 1E+02 0.0022 20.5 6.0 31 538-570 6-36 (53)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 42.0 1.9E+02 0.0041 23.5 9.1 43 517-559 81-125 (126)
441 KOG4567 GTPase-activating prot 40.7 2.9E+02 0.0062 26.5 9.3 70 202-276 264-343 (370)
442 PRK10564 maltose regulon perip 40.5 55 0.0012 31.0 4.9 28 292-319 260-287 (303)
443 cd08819 CARD_MDA5_2 Caspase ac 40.3 1.6E+02 0.0034 22.1 7.4 13 409-421 51-63 (88)
444 COG5159 RPN6 26S proteasome re 40.1 3.3E+02 0.0071 25.7 20.5 52 186-237 8-66 (421)
445 PRK10564 maltose regulon perip 40.0 69 0.0015 30.4 5.5 29 572-600 261-289 (303)
446 KOG3364 Membrane protein invol 39.6 2.2E+02 0.0047 23.5 10.3 66 532-597 31-100 (149)
447 PF10255 Paf67: RNA polymerase 39.6 4.2E+02 0.0091 26.8 15.0 63 253-316 124-191 (404)
448 COG5108 RPO41 Mitochondrial DN 39.6 1.6E+02 0.0035 31.3 8.3 75 538-615 33-115 (1117)
449 COG2256 MGS1 ATPase related to 38.9 4.2E+02 0.0091 26.6 15.2 174 55-244 160-352 (436)
450 KOG3807 Predicted membrane pro 38.5 3.7E+02 0.0081 25.9 13.6 51 476-526 287-338 (556)
451 PF13762 MNE1: Mitochondrial s 37.2 2.5E+02 0.0054 23.5 10.4 78 503-580 43-127 (145)
452 PF10155 DUF2363: Uncharacteri 37.0 2.3E+02 0.005 23.1 12.8 44 71-121 2-45 (126)
453 KOG0687 26S proteasome regulat 36.7 4E+02 0.0087 25.8 15.4 17 512-528 194-210 (393)
454 COG0735 Fur Fe2+/Zn2+ uptake r 36.5 1.9E+02 0.0042 24.2 7.2 58 559-617 12-69 (145)
455 PRK09857 putative transposase; 36.3 3.4E+02 0.0073 26.1 9.7 57 545-602 218-274 (292)
456 PF04910 Tcf25: Transcriptiona 36.0 4.5E+02 0.0098 26.2 21.0 57 366-422 110-167 (360)
457 PF04190 DUF410: Protein of un 35.9 3.8E+02 0.0082 25.2 20.1 18 543-560 151-168 (260)
458 KOG4814 Uncharacterized conser 35.9 4E+02 0.0087 28.5 10.3 54 505-558 400-453 (872)
459 PRK11639 zinc uptake transcrip 35.6 2E+02 0.0044 24.8 7.5 58 561-619 19-76 (169)
460 PF03745 DUF309: Domain of unk 35.6 1.5E+02 0.0032 20.5 6.1 48 543-590 9-61 (62)
461 PRK09462 fur ferric uptake reg 35.5 2.1E+02 0.0045 24.0 7.4 34 619-652 33-66 (148)
462 KOG0686 COP9 signalosome, subu 35.4 4.7E+02 0.01 26.2 18.2 63 147-209 151-215 (466)
463 PHA02537 M terminase endonucle 35.4 3.6E+02 0.0077 24.8 9.8 26 509-534 93-118 (230)
464 KOG0686 COP9 signalosome, subu 35.2 4.8E+02 0.01 26.2 14.6 61 361-422 152-215 (466)
465 PF14669 Asp_Glu_race_2: Putat 34.7 3.2E+02 0.007 24.1 14.2 54 290-353 108-161 (233)
466 KOG3364 Membrane protein invol 34.6 2.6E+02 0.0057 23.1 10.0 67 496-562 29-100 (149)
467 COG4941 Predicted RNA polymera 34.2 4.5E+02 0.0098 25.6 12.0 114 445-561 272-393 (415)
468 KOG1586 Protein required for f 33.8 3.8E+02 0.0082 24.6 23.1 22 440-461 165-186 (288)
469 PRK09857 putative transposase; 33.7 3.4E+02 0.0075 26.0 9.3 62 186-248 211-272 (292)
470 PRK08691 DNA polymerase III su 33.2 7E+02 0.015 27.5 12.3 86 514-602 179-279 (709)
471 KOG2659 LisH motif-containing 33.1 3.8E+02 0.0083 24.4 9.4 100 355-454 22-128 (228)
472 PRK13342 recombination factor 33.0 5.5E+02 0.012 26.2 19.5 33 442-474 243-275 (413)
473 PF10366 Vps39_1: Vacuolar sor 32.3 2.5E+02 0.0054 22.1 7.7 27 148-174 41-67 (108)
474 KOG2582 COP9 signalosome, subu 32.1 5.1E+02 0.011 25.6 18.7 18 227-244 194-211 (422)
475 PF02184 HAT: HAT (Half-A-TPR) 32.1 1.1E+02 0.0024 17.8 3.4 22 584-607 3-24 (32)
476 PF11817 Foie-gras_1: Foie gra 31.4 3.6E+02 0.0079 25.0 9.0 22 538-559 183-204 (247)
477 PF09454 Vps23_core: Vps23 cor 31.3 1.1E+02 0.0024 21.3 4.1 48 180-228 7-54 (65)
478 PF02847 MA3: MA3 domain; Int 30.9 2.3E+02 0.005 22.2 6.7 19 540-558 9-27 (113)
479 KOG3807 Predicted membrane pro 30.5 5.1E+02 0.011 25.1 12.7 14 263-276 287-300 (556)
480 PF15297 CKAP2_C: Cytoskeleton 30.3 5.4E+02 0.012 25.3 9.9 61 550-612 120-184 (353)
481 KOG4521 Nuclear pore complex, 29.8 9.6E+02 0.021 28.1 15.7 125 101-233 927-1071(1480)
482 COG5187 RPN7 26S proteasome re 29.7 5E+02 0.011 24.7 13.8 109 429-539 115-233 (412)
483 PF09868 DUF2095: Uncharacteri 29.0 2.1E+02 0.0046 22.5 5.5 36 295-331 67-102 (128)
484 cd08315 Death_TRAILR_DR4_DR5 D 28.8 2.7E+02 0.0058 21.3 8.3 82 36-122 10-92 (96)
485 KOG4814 Uncharacterized conser 28.6 7.7E+02 0.017 26.6 11.0 62 147-209 395-456 (872)
486 KOG2034 Vacuolar sorting prote 28.4 8.9E+02 0.019 27.2 29.9 135 293-446 508-645 (911)
487 PF07720 TPR_3: Tetratricopept 28.4 1.4E+02 0.003 17.9 3.7 22 149-170 4-25 (36)
488 cd07153 Fur_like Ferric uptake 28.4 1.3E+02 0.0029 23.8 4.9 41 577-617 9-49 (116)
489 PF14669 Asp_Glu_race_2: Putat 28.4 4.2E+02 0.0091 23.5 14.8 24 470-493 138-161 (233)
490 KOG0551 Hsp90 co-chaperone CNS 28.0 5.1E+02 0.011 25.2 8.9 85 472-556 89-176 (390)
491 KOG4567 GTPase-activating prot 27.9 3.6E+02 0.0078 25.9 7.8 58 344-406 263-320 (370)
492 COG5108 RPO41 Mitochondrial DN 27.8 3.7E+02 0.008 28.8 8.6 93 256-352 33-131 (1117)
493 PF09797 NatB_MDM20: N-acetylt 27.7 6.2E+02 0.014 25.2 24.9 68 504-571 185-255 (365)
494 PF05944 Phage_term_smal: Phag 27.5 3.5E+02 0.0076 22.3 9.8 80 566-651 47-126 (132)
495 PF12926 MOZART2: Mitotic-spin 27.1 2.7E+02 0.0058 20.8 8.1 44 589-632 29-72 (88)
496 PF02847 MA3: MA3 domain; Int 27.1 2.7E+02 0.0058 21.8 6.5 19 471-489 9-27 (113)
497 PF08542 Rep_fac_C: Replicatio 27.0 2.6E+02 0.0057 20.7 7.9 44 94-139 5-48 (89)
498 PF15297 CKAP2_C: Cytoskeleton 26.9 6.2E+02 0.013 24.9 9.8 64 516-579 120-186 (353)
499 PF09454 Vps23_core: Vps23 cor 26.9 2.3E+02 0.0049 19.9 5.1 23 505-527 14-36 (65)
500 KOG4521 Nuclear pore complex, 26.7 1.1E+03 0.023 27.7 14.4 118 502-625 986-1124(1480)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-71 Score=595.89 Aligned_cols=537 Identities=18% Similarity=0.246 Sum_probs=485.6
Q ss_pred HHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVR 154 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 154 (658)
..++...++... -.++...|..+...+++.|++++|.++|++|.+. +..+++...+..++.
T Consensus 354 ~~~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~----------------gvv~~~~v~~~~li~ 414 (1060)
T PLN03218 354 ENSLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR----------------GLLDMDKIYHAKFFK 414 (1060)
T ss_pred hhhHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC----------------CCCCchHHHHHHHHH
Confidence 344555554432 2345667888888999999999999999999874 123456777888899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006154 155 ACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234 (658)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 234 (658)
.|.+.|.+++|.++|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 99999999999999998875 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~---M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI---MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 78888999999999999999999999999999999
Q ss_pred HHH--cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 315 MIK--AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 315 ~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 568 M~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 976 578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
|..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.||.
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHH----c-
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFI----N- 546 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~- 546 (658)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|.. +..+|+.++..|.+ .
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~ 807 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKAC 807 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999987 89999998865432 1
Q ss_pred ------------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006154 547 ------------------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTT 608 (658)
Q Consensus 547 ------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 608 (658)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++
T Consensus 808 ~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~ 887 (1060)
T PLN03218 808 ALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLST 887 (1060)
T ss_pred hhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHH
Confidence 22467999999999999999999999999999899999999999999998889999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006154 609 LVTRFSKNCSPEEVIELHDDMVLSGVSPDNQ 639 (658)
Q Consensus 609 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 639 (658)
+|.++++. .++|..++++|.+.|+.|+..
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99998542 468999999999999999985
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-72 Score=619.41 Aligned_cols=542 Identities=20% Similarity=0.266 Sum_probs=351.1
Q ss_pred ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHH
Q 006154 73 SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDAL 152 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 152 (658)
....|..++..+.+. +..++...++.++..+++.|+++.|+.+|++|. +++..+|+.+
T Consensus 101 ~~~~a~~~~~~~~~~-~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---------------------~~d~~~~n~l 158 (857)
T PLN03077 101 AVEEGSRVCSRALSS-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---------------------ERDLFSWNVL 158 (857)
T ss_pred CHHHHHHHHHHHHHc-CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---------------------CCCeeEHHHH
Confidence 344555555554432 334445555555555555555555555555543 3456677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
+.+|++.|++++|+++|++|...|+.||..+|+.++.++.+.+++..+.+++..|.+.|+.||..++++++.+|++.|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 312 (658)
++|.++|++|. .||..+||++|.+|++.|++++|+++|++ |...|+.||..||+.++.+|++.|+++.|.+++
T Consensus 239 ~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~---M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 239 VSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT---MRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH---HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 77777777765 35667777777777777777777777777 566667777777777777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 777777777777777777777777777777777777765 2566677777777777777777777777777777777
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
|..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA 463 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766654 35566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--------------------- 531 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------------- 531 (658)
+|++.|+.++|+.+|++|.+ +..||..+|+.++.+|++.|+++.+.+++..+.+.+..
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 66666666666666666654 35666666665555555555555555555555544443
Q ss_pred ----------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCC
Q 006154 532 ----------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI-LHGII 600 (658)
Q Consensus 532 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~ 600 (658)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.
T Consensus 543 A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 543 AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555555555555555555555555555555555555555555555555 34555
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCC
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAE 655 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 655 (658)
|+..+|+.++.+|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 555555555555555555555555555552 4555555555555555544443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-71 Score=611.22 Aligned_cols=556 Identities=18% Similarity=0.195 Sum_probs=515.4
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhc-----------
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSY----------- 139 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------- 139 (658)
.++...|++.|..+. +++..+|+.++..+++.|++++|..+|++|...+..+...-|..++...
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 357889999999886 4678899999999999999999999999998753222222222222111
Q ss_pred -------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006154 140 -------EICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY 212 (658)
Q Consensus 140 -------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 212 (658)
.+..+++.+++.|+.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 25678899999999999999999999999999964 5889999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |. .||..+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~---m~----~~d~~s~ 357 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR---ME----TKDAVSW 357 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh---CC----CCCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 54 3689999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|+.+.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999975 5889999999999999999999999999986 58999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL- 531 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 531 (658)
..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|..
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 579999999999999999999999999999999887
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMR-NVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
|..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl 664 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALL 664 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHH
Confidence 99999999999999999999999999998 68999999999999999999999999999999984 789999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCCCcC
Q 006154 611 TRFSKNCSPEEVIELHDDMVLSGVSPD-NQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 611 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a 657 (658)
.+|...|+.+.+....+++.+ +.|+ ...|..|.+.|+..|++++|
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 999999999999999999887 5665 46777788999999999986
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-69 Score=583.29 Aligned_cols=502 Identities=16% Similarity=0.265 Sum_probs=480.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH-SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..++...|..++..+++.|++++|.++|++|.+.|+ .++...++.++..|.+.|..++|..+++.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 445677888999999999999999999999999986 46778888999999999999999999999974 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+.+|.+|+
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e---M~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE---MVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 788899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK--RGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999986 67899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHH
Q 006154 459 GLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYN 537 (658)
Q Consensus 459 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 537 (658)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++|++|...+.. |..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----F-------------------GCYQQARELMKVM 594 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 594 (658)
.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876432 1 2246899999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 595 ILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 595 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
++.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++||+++++
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999999999999899999999999999999988999999999999999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-63 Score=532.07 Aligned_cols=471 Identities=19% Similarity=0.273 Sum_probs=450.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKG-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
+...|+.++..|.+.|++++|+++|+.|...+ +.|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44579999999999999999999999999865 78999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++ |...|+.|+..+|+.++.++++.|
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~---M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFRE---MWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHH---HHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999996 47999999999999999999999999999 788899999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 383 (658)
..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 599999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006154 384 DMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD 463 (658)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 463 (658)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999965 69
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC-CHhhHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI-GLL-DAITYNTLIN 541 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~ 541 (658)
..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+. +.. +..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 554 8899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPE 620 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 620 (658)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..++..|++.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998876 4689999999999999999999999999999975 4554 679999999999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 006154 621 EVIELHDDMVLSGVS 635 (658)
Q Consensus 621 ~A~~~~~~m~~~g~~ 635 (658)
+|.+++++|.++|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=530.04 Aligned_cols=515 Identities=19% Similarity=0.243 Sum_probs=469.4
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
..+..+++.++..+.+.|++++|..+|+.+... .+..++..+|+.++.+|.+.++++.|.+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~----------------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~ 147 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG----------------CPFTLPASTYDALVEACIALKSIRCVKAVYW 147 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc----------------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345558999999999999999999999988753 1356788999999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 250 (658)
.|.+.|+.||+.+||.++.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.|+
T Consensus 148 ~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~ 223 (697)
T PLN03081 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223 (697)
T ss_pred HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 8999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 006154 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATL 330 (658)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 330 (658)
..+|+.++.+++..|+.+.+.+++.. +...|+.||..+|+.++.+|++.|++++|.++|++|. ++|+.+|+++
T Consensus 224 ~~t~~~ll~a~~~~~~~~~~~~l~~~---~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~l 296 (697)
T PLN03081 224 PRTFVVMLRASAGLGSARAGQQLHCC---VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296 (697)
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHH---HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHH
Confidence 99999999999999999999999999 7888999999999999999999999999999999997 6799999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006154 331 IDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV 410 (658)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (658)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~ 376 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
++|.++|++|.+ ||..+||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|
T Consensus 377 ~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 377 EDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999964 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 006154 491 KK-VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV 569 (658)
Q Consensus 491 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 569 (658)
.+ .|+.|+..+|+.++++|++.|++++|.++++++. ..++..+|+.|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~ 529 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN 529 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence 86 6999999999999999999999999999998652 22388899999999999999999999999998653 23577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH-------HHHHHh----CCChHHHHHHHHHHHHCCCCCC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILHGIIPDY-VTYTTL-------VTRFSK----NCSPEEVIELHDDMVLSGVSPD 637 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l-------~~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 637 (658)
+|..|++.|++.|++++|.+++++|.+.|+...+ .+|..+ +.+-.. ..-++...++..+|.+.|+.||
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~ 609 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE 609 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999985332 233211 110000 1124556778888999999998
Q ss_pred HH
Q 006154 638 NQ 639 (658)
Q Consensus 638 ~~ 639 (658)
..
T Consensus 610 ~~ 611 (697)
T PLN03081 610 EN 611 (697)
T ss_pred cc
Confidence 53
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-34 Score=328.17 Aligned_cols=566 Identities=13% Similarity=0.066 Sum_probs=453.2
Q ss_pred hcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCh-------------------H
Q 006154 69 EFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSP-------------------L 129 (658)
Q Consensus 69 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-------------------~ 129 (658)
...++++.|...|..+.... +.+...+..++.++.+.|++++|...++.+.......+ .
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 33456777777777776543 44555666677777777777777777776665321111 1
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 130 EFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
+.|..... ..|.+...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|++++|..+++++..
T Consensus 384 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 384 EYLAKATE---LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHh---cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11111111 34556667777777777788888888888777766433 334555667777788888888888888876
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCCh
Q 006154 210 CGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNS 289 (658)
Q Consensus 210 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 289 (658)
. .+.+..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++ ... .+.+.
T Consensus 460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~-~~~~~ 533 (899)
T TIGR02917 460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKV---LTI-DPKNL 533 (899)
T ss_pred h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CcCcH
Confidence 4 345677888888888888999999999988887533 24557777888888889999999999884 332 23467
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 369 (658)
.++..+...+.+.|+.++|...++++.+.+ +.+...+..++..|...|++++|..+++.+.+.. ..+...|..+..++
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 788888889999999999999999988775 5677788888999999999999999999988754 34677899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+..+. +..++..++..+...|++++|.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 336677888889999999999999999999887544 6788899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
++++.+.+.+ +.+...+..+...+...|++++|...|+.+.+.. |+..++..++..+...|++++|.+.++.+.+..
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 3467788888899999999999999999998864 455777889999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTL 609 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 609 (658)
+.+...+..++..|...|++++|...|+++.+.. +++...++.++..+...|+ .+|+..++++.... +.+..++..+
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~ 843 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTL 843 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 8899999999999999999999999999999875 5678889999999999999 88999999998763 3356677888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 610 VTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
...+...|++++|.+.++++.+.+. .+..++..+...+.+.|+.++|
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999999999753 3889999999999999999887
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-33 Score=319.88 Aligned_cols=567 Identities=14% Similarity=0.054 Sum_probs=305.0
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCh----------------HHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSP----------------LEFLEG 134 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ 134 (658)
.++++.|+..|..+.... +.....+..++.++...|++++|...++.+++.....+ .+....
T Consensus 274 ~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666665432 22233445556666666777777777766655311110 000000
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCc
Q 006154 135 LLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVE 214 (658)
Q Consensus 135 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 214 (658)
+-......+.++..+..+...+.+.|++++|.++|+++.+..+ .+...+..+...+...|++++|.+.++++.+.+. .
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-E 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-c
Confidence 0011112233444555555555555555555555555554422 1344444555555555555555555555554321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 215 NVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 215 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
.......++..+.+.|++++|.++++++.... +++..++..+...+...|++++|.+.|+++ ... .+.+...+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---~~~-~~~~~~~~~~ 504 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKA---LSI-EPDFFPAAAN 504 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHH---Hhh-CCCcHHHHHH
Confidence 22333344445555555555555555555432 224445555555555666666666666552 221 1223344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++...+. .+...+..++..+.+.|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCC
Confidence 5555556666666666666655543 34455555555666666666666666666554432 234445555556666666
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
+++|..+++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+. +...+..+...+.+.|++++|...+++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666655432 234555566666666666666666666666554322 444555566666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+....+.+ .
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 737 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q 737 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence 55542 2235555556666666666666666666665543 2345555555666666666666666666666555443 4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
.+..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.|+++.+.. +++...+..+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44555666666666666666666665542 3345556666666666666666666666666542 334555666666666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 615 KNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
+.|+ ++|+.+++++.+. .+-+..++..+...+...|++++|
T Consensus 816 ~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred hcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 6666 5566666666653 122334555666666666666654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1.4e-25 Score=254.34 Aligned_cols=566 Identities=12% Similarity=-0.008 Sum_probs=353.1
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChH-HHHHHHHhhccCCCCCHHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPL-EFLEGLLDSYEICKATPAV 148 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 148 (658)
..++++.|.+.+..+.... +.+++.+..++.++.+.|+.++|.+.++++.+....++. ..+...+. ...++...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~---~~~~~~~~ 114 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML---LSTPEGRQ 114 (1157)
T ss_pred hhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH---hcCCchhh
Confidence 3568999999999888655 567889999999999999999999999999885322221 11111111 12233344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
...+.+.+.+.|++++|.+.|+.+.+.+.. +.. ....+.......|+.++|++.++++.+.. +.+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 566777899999999999999999886433 322 22222222334689999999999999874 456778888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC------------------CCh-hhHH---------------------------------
Q 006154 228 KECKLEEALSLYYRMLKSGIW------------------PNV-VCFN--------------------------------- 255 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~------------------p~~-~~~~--------------------------------- 255 (658)
..|+.++|++.++++...... +.. ..+.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 999999999999988653210 000 0000
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhH------
Q 006154 256 -MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDC-NVRTY------ 327 (658)
Q Consensus 256 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------ 327 (658)
.....+...|++++|+..|++. ... -+.+...+..+..++.+.|++++|+..|++..+..-.. ....+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~a---L~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQA---VRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1122344556667777666663 221 12245566666666667777777777776666543111 11111
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 328 ------ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT 401 (658)
Q Consensus 328 ------~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 401 (658)
......+.+.|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+.... +...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 1123345566677777777776666532 23445556666666677777777777766654322 333444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEEHMV--------GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
..+. .++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+... -+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4332 22334443333322111000 0011122334445556666666666666665432 134445555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHH--------------------------------------------HHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYN--------------------------------------------SIINGL 509 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~ 509 (658)
|.+.|++++|...++++.+.... +...+. .+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 66666666666666666553221 222221 223344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 510 CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
...|+.++|..+++ ..+.++..+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|++
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55566666666555 344567778888999999999999999999998864 4467788899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHhhcCCCCCcC
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGV--SP---DNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a 657 (658)
.++...... +.+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999887642 23455667778888899999999999999987521 22 224566667778888887766
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.7e-25 Score=250.03 Aligned_cols=548 Identities=13% Similarity=0.064 Sum_probs=407.0
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCC--hHHHHHHHHhhccCCCCCHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVS--PLEFLEGLLDSYEICKATPA 147 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 147 (658)
....++.|++.++.+.... +.++..+..++.++...|++++|...++++....... ....+...+......+....
T Consensus 159 ~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 3467888899888887654 5567788889999999999999999999887642211 11222222222222233334
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.+...+..+-.....+.|...+.........|.... ......+...|++++|+..|++.++.. +.+...+..+...+.
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444444444444556677777777655433333322 234567788999999999999999864 447888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hhhH------------HHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPN-VVCF------------NMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
+.|++++|+..|++..+...... ...+ ......+.+.|++++|+..|+++ ... .+.+...+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A---l~~-~P~~~~a~~~ 390 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA---RQV-DNTDSYAVLG 390 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHH
Confidence 99999999999999987643221 1112 12244667899999999999994 332 2235667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--------CcHhHHHHHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM--------PNNVVYNSTI 366 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--------p~~~~~~~ll 366 (658)
+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+...... .....+..+.
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999875 455667777777774 56789999888765432100 0122455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 006154 367 HWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446 (658)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (658)
..+...|++++|+..+++.++..+. +...+..+...+.+.|++++|...++++.+..+. +...+..+...+...++.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 7888999999999999999986443 5677788899999999999999999999886544 5555556666778899999
Q ss_pred HHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 447 AAKQLLSSMIVRGLIPDII---------TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
+|...++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 9999998765432222221 123445678889999999999872 34566777889999999999999
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|...++.+.+..|.+..++..++..|...|++++|++.++...+.. +.+..++..+..++...|++++|.++++++...
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888752 334566777888999999999999999999875
Q ss_pred CC--CC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCC
Q 006154 598 GI--IP---DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS-GVS 635 (658)
Q Consensus 598 g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~ 635 (658)
.. .| +...+..+...+...|++++|+..|++.+.. |+.
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 32 12 2245666778899999999999999998753 443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.6e-21 Score=205.31 Aligned_cols=558 Identities=13% Similarity=0.020 Sum_probs=249.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCC---------------CC
Q 006154 63 VNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANS---------------VS 127 (658)
Q Consensus 63 ~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~---------------~~ 127 (658)
....+...+++++.|+..|+.+.+.. |.++.++..++.++...|++++|+..+++.++... ..
T Consensus 49 ~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~k 126 (987)
T PRK09782 49 DKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVK 126 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChh
Confidence 33445555689999999999998766 66688999999999999999999999999887411 01
Q ss_pred hHHHHHHHHhhccCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCccCHHhHHHH-HHHHHhcCCHh
Q 006154 128 PLEFLEGLLDSYEICKATPAVFDALVRA--------CTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF-LSHLVKLNEIG 198 (658)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~ 198 (658)
...+++.++.. .|.++.++..+... |.+. ++|.+.++ .....+.|.+.+.... ...|.+.|+++
T Consensus 127 A~~~ye~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 127 SVTTVEELLAQ---QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred HHHHHHHHHHh---CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 12333333332 23333444444333 3333 22222222 2222222223322222 45555555555
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 199 RFWKLYKEMVSCGYVENVNTFNLVIYALCK-ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 199 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
+|+.+++++.+.+ +.+......+..+|.. .++ +++..+++.. ++-+...+..+...|.+.|+.++|.++++++
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5555555555543 2233334444444444 233 4444443321 1124445555555555555555555555552
Q ss_pred cccccCCc-CCChhhHHHHH------------------------------HHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 278 GVMSGDSV-LPNSVTHNCII------------------------------NGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326 (658)
Q Consensus 278 ~~~~~~~~-~~~~~~~~~li------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 326 (658)
...-. .|...+|.-++ ..+.+.+.++.++++.. +.|....
T Consensus 274 ---~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 344 (987)
T PRK09782 274 ---KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM 344 (987)
T ss_pred ---cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH
Confidence 21111 12222222111 11112222222211100 0111110
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHH
Q 006154 327 YATLIDGYA--RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK-H-ICPDHFTYSILTK 402 (658)
Q Consensus 327 ~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~ 402 (658)
..++... ..+...++...+..|.+.. .-+......+.-...+.|+.++|..+++..... + ..++.....-++.
T Consensus 345 --~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 345 --LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred --HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 0110000 0112222222222222210 002222222222334455556666655555441 1 1122223334444
Q ss_pred HHHhcCC---hHHHHHH----------------------HHHHHHc-CC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 403 GLCRNGC---VKQAFKL----------------------HNQVLEE-HM-VG--DAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 403 ~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
.|.+.+. ..++..+ .+..... +. ++ +...|..+..++.. ++.++|...+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 4444433 1111111 1111110 00 11 33444444444444 45555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 533 (658)
+..... |+......+...+...|++++|...|+++... +|+...+..+...+...|+.++|...++...+..+...
T Consensus 501 ~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 501 QAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 444432 33322222233334555555555555554432 22333334444455555555555555555555544433
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..... +.+...+..+...+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33333333333445555555555555553 3445555555555555555555555555555531 22334444455555
Q ss_pred HhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCCCcC
Q 006154 614 SKNCSPEEVIELHDDMVLSGVSP-DNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 657 (658)
...|++++|+..+++..+. .| +...+..+..++...|+.++|
T Consensus 654 ~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555555555555555542 23 334555555555555555443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-23 Score=197.64 Aligned_cols=445 Identities=17% Similarity=0.144 Sum_probs=355.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
....+++-+-+.|++.+|++....+-. ..+.+......+-..+.+..+++....--....+.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~------------------~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQ------------------EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhc------------------cCCCcccceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 366788888899999999887765554 34445555555666677767776665555444444
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCF- 254 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~- 254 (658)
. +.-..+|..+..++...|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+....
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~ 187 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCAR 187 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhh
Confidence 2 3356788889999999999999999999999864 335778888899999999999999999888875 5665543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 006154 255 NMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDG 333 (658)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 333 (658)
..+...+-..|++++|...+.+. .. ..|. .+.|+.|...+-..|+...|+.-|++..+.+ +.-...|-.|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkA---i~--~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKA---IE--TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNV 261 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHH---Hh--hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHH
Confidence 33444455679999998888873 32 2233 5778889999999999999999999998774 4446788899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMP-NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ 412 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (658)
|...+.+++|...|.+.... .| ....+..+...|..+|.++-|++.|++.++..+. =...|+.|..++-..|++.+
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHH
Confidence 99999999999999888776 34 4567777888899999999999999999885332 35689999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMK 491 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 491 (658)
|.+.+.+.+...+. ...+.+.|...+...|.+++|..+|....+- .|. ...++.|...|.+.|++++|+..|++.+
T Consensus 339 a~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 339 AVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999887654 5677888999999999999999999988874 333 5677889999999999999999999998
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hH
Q 006154 492 KVEKKPN-LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KV 569 (658)
Q Consensus 492 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 569 (658)
+ +.|+ ...|+.+...|...|+.+.|...+.++...+|.-..+++.|...|-..|+..+|++-|++.++ +.|| ..
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 8 4555 457889999999999999999999999999998899999999999999999999999999998 4566 44
Q ss_pred HHHHHHHHH
Q 006154 570 GYNILINFL 578 (658)
Q Consensus 570 ~~~~l~~~~ 578 (658)
.|..++.++
T Consensus 492 A~cNllh~l 500 (966)
T KOG4626|consen 492 AYCNLLHCL 500 (966)
T ss_pred hhhHHHHHH
Confidence 555555543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-22 Score=194.54 Aligned_cols=446 Identities=16% Similarity=0.098 Sum_probs=361.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
....|..-..+.|++.+|++.-...-..+.. +......+-.++....+.+....--...++. .+.-..+|..+.+.+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 3566777888999999999988777665432 3333334445566666666655544444443 2445778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH-HHHHHHHHhcCChH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH-NCIINGFCKLGRVE 306 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~ 306 (658)
..|++++|+.+++.+++...+ .+..|..+..++...|+.+.|.+.|.+. .. +.|+.... +.+...+-..|+++
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~a---lq--lnP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEA---LQ--LNPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHH---Hh--cCcchhhhhcchhHHHHhhcccc
Confidence 999999999999999987433 5779999999999999999999999883 33 45554433 34445555689999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 307 FAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIHWLFAEGDVEGALFVLSDM 385 (658)
Q Consensus 307 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 385 (658)
+|...+.+..+.. +-=...|+.|.-.+-.+|+...|+..|++..+. .|+ ...|-.|...|...+.+++|+..|.+.
T Consensus 202 ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 202 EAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 9999999988773 334678899999999999999999999999887 444 457889999999999999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006154 386 IDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII 465 (658)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 465 (658)
...... ....+..+...|...|..+.|+..+++.++..+. -...|+.|..++-..|++.+|...+.+...... ....
T Consensus 279 l~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~had 355 (966)
T KOG4626|consen 279 LNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHAD 355 (966)
T ss_pred HhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHH
Confidence 865322 4567788888899999999999999999998654 567899999999999999999999999988632 2466
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
..+.|...+...|.+++|..+|....+... --....+.|...|..+|++++|...++++.+..|.-..+|+.+...|-.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 778899999999999999999999988522 2356788899999999999999999999999999899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY-VTYTTLVTR 612 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 612 (658)
.|+.+.|.+.+.+.+.. .|. ...++.|...|...|++.+|++-+++... ++||. ..|..++.+
T Consensus 435 ~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred hhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 99999999999999984 565 66789999999999999999999999987 56663 345555544
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-20 Score=187.54 Aligned_cols=559 Identities=15% Similarity=0.079 Sum_probs=357.9
Q ss_pred hHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHH-----------------HHHHH
Q 006154 74 PKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEF-----------------LEGLL 136 (658)
Q Consensus 74 ~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~l~ 136 (658)
.+.|..-|..+.++. +++.-...--+.+....+++..|..++..++..+.....++ ...+.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 467777788777665 56666666666777777788888888777654311111111 00011
Q ss_pred hhccCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006154 137 DSYEICKATPAVFDALVRACTQI---GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV 213 (658)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 213 (658)
....-.|.+..++..|...-... ..+..+..++...-... .-+|.+.+.|...|.-.|++..++.+...+...-..
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 11112223333333333222222 23444555555544433 236667777777777777777777777777754211
Q ss_pred --cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh
Q 006154 214 --ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT 291 (658)
Q Consensus 214 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 291 (658)
.-...|-.+.+++-..|++++|..+|.+..+....--+..+-.+...+.+.|+++.+...|+.+ ... .+-+..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv---~k~-~p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV---LKQ-LPNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH---HHh-CcchHHH
Confidence 1133466677777777778887777777665422211334555667777777777777777773 321 2334556
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCcHhHHH
Q 006154 292 HNCIINGFCKLG----RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEM----VKRGLMPNNVVYN 363 (658)
Q Consensus 292 ~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~g~~p~~~~~~ 363 (658)
...+...|...+ ..+.|..++.+..+.- +.|...|-.+...|-...-+.. +..|... ...+..+.+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666666554 4566666666666554 5566677666666655443333 5555443 3445456677778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 364 STIHWLFAEGDVEGALFVLSDMIDK---HICPDH------FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNI 434 (658)
Q Consensus 364 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 434 (658)
.+.......|++++|...|...... ...+|. .+--.+...+-..++++.|.+.|..+++..+. -+..|..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHH
Confidence 8888888888888888888777654 122222 12233445555667788888888888777543 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE-KKPNLVIYNSIINGLCK-- 511 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 511 (658)
++.+....+...+|...++...... ..++..++.+...+.+...+..|.+-|....+.- ..+|....-+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5544445567778888887777642 2355566666667777777877777666655432 23566666667665542
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 512 ----------DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 512 ----------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
.+..+.|.++|.++.+..|.|..+-|.++-.++..|++.+|..+|.+..+.. .....+|..+.++|..+
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 3457889999999999999899999999999999999999999999998864 23566788999999999
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 582 GCYQQARELMKVMILH-GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
|++..|+++|+..... +..-+..+...|..++.+.|.+.+|.+.+.........-....+|..
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 9999999999987754 44456778888999999999999999998888875333333445443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.3e-18 Score=188.63 Aligned_cols=539 Identities=10% Similarity=-0.029 Sum_probs=319.0
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCC-C-hHHHH---------------
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSV-S-PLEFL--------------- 132 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~--------------- 132 (658)
..++++.|+..++.+.+.. +.+...+..++.+ +++++|..++++++....- . +....
T Consensus 90 ~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~ 163 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL 163 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH
Confidence 3568999999999998754 4455555544333 8999999999999986221 1 11000
Q ss_pred ---HHHHhhccCCC--CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh-cCCHhHHHHHHH
Q 006154 133 ---EGLLDSYEICK--ATPAVFDAL-VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK-LNEIGRFWKLYK 205 (658)
Q Consensus 133 ---~~l~~~~~~~~--~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~ 205 (658)
...+. ....+ +.+.+.... .+.|.+.|++++|++++.++.+.++. +......|..+|.. .++ +.+..+++
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~ 240 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS 240 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc
Confidence 00111 11122 234545555 99999999999999999999998644 56667778778887 477 88888865
Q ss_pred HHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHH----------------
Q 006154 206 EMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW-PNVVCFNMIINEACQVGDLE---------------- 268 (658)
Q Consensus 206 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~---------------- 268 (658)
. ....+...+..+...+.+.|+.++|.++++++...-.. |+..+|.-++ .+.+...
T Consensus 241 ~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 241 Q----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL---SKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred h----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH---HhccCchhhhccchhhhhHHHHH
Confidence 4 23367889999999999999999999999997654222 5555554444 3333320
Q ss_pred -HHHHHHHHh---------cccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 269 -FALKLFRKM---------GVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG 338 (658)
Q Consensus 269 -~A~~~~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 338 (658)
-.+++.+.. +.+ ..+.|.......-..+....+...++...+..|.+.. +-+....-.+.-.....|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKL--LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHH--hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 000001110 001 1133333321111112223355556666666665542 334444444555566677
Q ss_pred ChHHHHHHHHHHHHC-C-CCCcHhHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhC-CC
Q 006154 339 SSEEALRLCDEMVKR-G-LMPNNVVYNSTIHWLFAEGD---VEGALFV----------------------LSDMIDK-HI 390 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~ 390 (658)
+.++|.+++...... + -.++......++..|.+.+. ..++..+ +...... +.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 777777777776552 1 12233334455555555544 2222222 1111111 11
Q ss_pred -CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006154 391 -CP--DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY 467 (658)
Q Consensus 391 -~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 467 (658)
++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++++... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 22 44555666655555 66667777666666553 33333333444445677777777777776543 2333444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
..+...+.+.|++++|...+++..+... .+...+..+.......|++++|...+++..+..|. ...|..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 5555666677777777777777766532 22233333333344457777777777777777663 667777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++|+..+++..... +.+...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777753 3345566667777777777777777777777642 2245566677777777777777777777
Q ss_pred HHHHCCCCCCH
Q 006154 628 DMVLSGVSPDN 638 (658)
Q Consensus 628 ~m~~~g~~p~~ 638 (658)
+..+ ..|+.
T Consensus 702 ~Al~--l~P~~ 710 (987)
T PRK09782 702 LVID--DIDNQ 710 (987)
T ss_pred HHHh--cCCCC
Confidence 7776 34443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.2e-19 Score=177.87 Aligned_cols=555 Identities=14% Similarity=0.072 Sum_probs=412.1
Q ss_pred cCCChHHHHHHHHHhccc-CCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCC-------------------hH
Q 006154 70 FRKSPKLALEFYTWVGEN-NRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVS-------------------PL 129 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~-------------------~~ 129 (658)
.+++...|+.+|..+... +...++ ....+.+.+.+.++.+.|...+..+++...-. -.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 357889999999987654 334444 44556788889999999988888887642211 01
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 006154 130 EFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS--VSIHAWNNFLSHLVKLNEIGRFWKLYKEM 207 (658)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 207 (658)
..+..+...+...+.+|.+.+.|.+-|.-.|++..++.+...+...... .-..+|-.+.++|...|+++.|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 2233345566677899999999999999999999999999999875422 12356888999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHhcccccC
Q 006154 208 VSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG----DLEFALKLFRKMGVMSGD 283 (658)
Q Consensus 208 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~ 283 (658)
.+..-.--+..+--+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..++.+ ....
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K---~~~~ 409 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGK---VLEQ 409 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH---HHhc
Confidence 8764221244556678899999999999999999988632 24557777777777665 56777777777 3332
Q ss_pred CcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC
Q 006154 284 SVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI----KAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR---GLM 356 (658)
Q Consensus 284 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~ 356 (658)
.+.|...|..+...+....-+. +...+..+. ..+..+.....|.+...+...|++++|...|+..... -..
T Consensus 410 -~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 -TPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred -ccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3457788888877776554443 366665544 4455678889999999999999999999999998765 122
Q ss_pred CcH------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 006154 357 PNN------VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY 430 (658)
Q Consensus 357 p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (658)
+|. .+-..+...+-..++.+.|.+.|..+....+. -+..|..++......+...+|...+..+...+-. ++.
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcH
Confidence 333 23334556666778999999999999886322 3444555554444567889999999999876533 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCC
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCK------------GGNIEGAVQVYENMKKVEKKP 497 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~ 497 (658)
.+..+...+.+...+..|.+-|..+.+.- ..+|.++.-.|...|.+ .+..++|+++|.++.+..+.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 77778889999999999988777666542 22577766666665542 24578899999999887544
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVNKVGYNILIN 576 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~ 576 (658)
|...-+.+.-.++..|++.+|..+|.++.+.......+|-.++++|..+|++..|+++|+...+. ....+......|..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 77888889999999999999999999999988778899999999999999999999999988664 33456778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H----------------HhCCChHHHHHHHHHHHHCCCC
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTR--F----------------SKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~----------------~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
++.+.|.+.+|.+.+.......+.-....||..+.. . ...+..+.|.++|..|...+-.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988875433334445543321 1 1123467789999999887433
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=8.1e-21 Score=192.55 Aligned_cols=299 Identities=13% Similarity=0.084 Sum_probs=181.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCh
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTKGLCRNGCV 410 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 410 (658)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3344455555555555544421 1233444444455555555555555555444321111 12344555555555556
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI----ITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~ 486 (658)
++|...|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666655555554422 24455555666666666666666666665554322211 1234455566667777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
++++.+.. +.+...+..+...+.+.|++++|.+.++++....+. ...+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 77776643 223456666677777777777777777777766554 3456777778888888888888888887774 4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHH
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK---NCSPEEVIELHDDMVLSGVSPDNQ 639 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 639 (658)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.++++.|+..
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 56566677788888888888888888887764 5777777777776654 457788888888888776666554
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.9e-19 Score=188.86 Aligned_cols=430 Identities=13% Similarity=-0.016 Sum_probs=307.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.+......+.+.|++++|+..|++.++. .|++..|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4567788999999999999999999886 4677889999999999999999999999999874 445778888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
..|++++|+..|..+...+...+. ....++..+........+...++. .+++...+..+.. +......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~--------~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILET--------KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCCCHHHHHH-HHHHccCCc
Confidence 999999999988877654222121 112222211111112333333322 1122222332222 222222222
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCC-cHhHHHHHHHHHHhcCCHHHHHHH
Q 006154 308 AEEIRYAMIKAGIDCN-VRTYATLIDG---YARGGSSEEALRLCDEMVKRG-LMP-NNVVYNSTIHWLFAEGDVEGALFV 381 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 381 (658)
...-+....+. .+. ...+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22212221111 111 1111111111 123478999999999998765 223 445678888888899999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006154 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
+++.++.... ....|..+...+...|++++|...++++++..+. +..+|..+...+...|++++|...|++.++...
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999876322 4567888888899999999999999999887644 678888899999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHh------
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAI------ 534 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------ 534 (658)
.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+...+...|++++|...|++.....+. +..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 356677788888999999999999999988753 336788889999999999999999999999887765 221
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.++..+..+...|++++|..++++..... +.+...+..++..+.+.|++++|++.|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445799999999999988864 334567888999999999999999999998875
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=7.3e-19 Score=187.52 Aligned_cols=431 Identities=11% Similarity=0.005 Sum_probs=311.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006154 183 AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEAC 262 (658)
Q Consensus 183 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 262 (658)
.+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|++.++..++.... +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3556677889999999999999999975 577888888999999999999999999999986432 5668889999999
Q ss_pred hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 006154 263 QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEE 342 (658)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 342 (658)
..|++++|+..|..+ ....+. +......++..+.. ..+........+.. +++...+..+...+ ...+.+.
T Consensus 206 ~lg~~~eA~~~~~~~--~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTAS--CIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHH--HHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCc
Confidence 999999999988763 111111 11111122221111 22333333333332 33334444333322 2222222
Q ss_pred HHHHHHHHHHCCCCCcH-hHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCChHHHHHH
Q 006154 343 ALRLCDEMVKRGLMPNN-VVYNSTIHW---LFAEGDVEGALFVLSDMIDKH-ICP-DHFTYSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 343 A~~~~~~~~~~g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 416 (658)
...-+.+..+. .+.. ..+..+... ....+++++|...|++..+.+ ..| ....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22212211111 1111 111111111 123478999999999999865 223 455678888888999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006154 417 HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK 496 (658)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 496 (658)
+++.++..+. +...|..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..|++..+..+
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999987543 566888899999999999999999999988643 3578888899999999999999999999998643
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH------H
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV------G 570 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~ 570 (658)
.+...+..+...+.+.|++++|...++...+..+.++..++.+...+...|++++|+..|++........+.. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 3567788888999999999999999999999988899999999999999999999999999998853211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
++..+..+...|++++|.+++++..... +.+...+..+...+.+.|++++|+++|++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1222233445799999999999998753 234557888999999999999999999999874
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.2e-20 Score=189.34 Aligned_cols=303 Identities=12% Similarity=0.028 Sum_probs=232.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc---HhHHHHHHHHHHhc
Q 006154 296 INGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN---NVVYNSTIHWLFAE 372 (658)
Q Consensus 296 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~ll~~~~~~ 372 (658)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556777888888888887764 44566777777888888888888888887776532222 24567777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA----YSYNILINYLCKSNNLAAA 448 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 448 (658)
|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888888888888765 2345677788888888888888888888888776544321 2345677778888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 449 KQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 449 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999888753 23456777788889999999999999999887644333566788889999999999999999998888
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK---FGCYQQARELMKVMILHGIIPDYV 604 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 604 (658)
.+.. ..+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++|+.++++|.+.++.|++.
T Consensus 279 ~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGA-DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7654 44588899999999999999999998885 5888888888887775 558999999999999887777665
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2e-18 Score=183.24 Aligned_cols=331 Identities=15% Similarity=0.056 Sum_probs=230.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 006154 99 AIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS 178 (658)
Q Consensus 99 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 178 (658)
.++..+.+.|++++|..+++..+. ..|.++.++..++.+....|++++|.+.++++.+..+.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~------------------~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVL------------------TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHH------------------hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC
Confidence 345556677888888888877776 46666777777777777788888888888888776433
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+
T Consensus 109 -~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~- 184 (656)
T PRK15174 109 -QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC- 184 (656)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-
Confidence 56677777778888888888888888887752 344667777777788888888888888877665332 22233222
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG 338 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 338 (658)
..+...|++++|...++. +......++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 185 ~~l~~~g~~~eA~~~~~~---~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 185 LSFLNKSRLPEDHDLARA---LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHcCCHHHHHHHHHH---HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 346677888888888877 3333222333444555667777888888888888877664 556677777778888888
Q ss_pred ChHH----HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 339 SSEE----ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414 (658)
Q Consensus 339 ~~~~----A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (658)
++++ |...+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|.
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 8775 67778777766322 4557777777888888888888888887775432 4555666777777888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
+.++.+.+.++. +...+..+..++...|+.++|...|++..+.
T Consensus 339 ~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 339 DEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888877776433 2233444556677788888888888877765
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.5e-18 Score=181.46 Aligned_cols=333 Identities=10% Similarity=0.013 Sum_probs=227.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 219 FNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 219 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++ ... -+.+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~---l~~-~P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKL---LAV-NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHH---HHh-CCCChHHHHHHHHH
Confidence 344556677788888888888888776444 3445555666667788888888888883 332 12245667777788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 888888888888888887764 455667777788888888888888888877665332 22223222 346777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHH
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA----AKQLLSS 454 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~ 454 (658)
...++.+.+....++...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 888887776544344444555566777778888888888887776543 56666777777777777775 6777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
...... .+...+..+...+.+.|++++|+..+++..+..+. +...+..+...+...|++++|...++.+....+.+..
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 776532 24566677777777777777777777777765322 4555666677777777777777777777776666555
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+..+..++...|+.++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555566677777777777777777664
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1e-16 Score=170.27 Aligned_cols=454 Identities=13% Similarity=0.043 Sum_probs=331.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|..+.+...-+-...+.|+++.|++.|++..+..+.-.+..+ .++..+...|+.++|+..+++.... .+.......
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll 106 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA 106 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence 44556666666777788999999999999999987544223344 8888888999999999999999832 123344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.+...+...|++++|+++|+++.+.... +...+..++..+...++.++|++.+++ ... ..|+...+..++..+.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~---l~~--~dp~~~~~l~layL~~ 180 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATE---LAE--RDPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH---hcc--cCcchHHHHHHHHHHH
Confidence 4466888899999999999999987544 456777888889999999999999999 443 3455555655555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHH------HHHHHHH---H-
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVY------NSTIHWL---F- 370 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~------~~ll~~~---~- 370 (658)
..++..+|++.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+....+ ..+++.- .
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccc
Confidence 5677767999999999885 667888899999999999999998877653321 11111111 1111110 0
Q ss_pred -hcC---CHHHHHHHHHHHHhC-CCCCCh-hh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 371 -AEG---DVEGALFVLSDMIDK-HICPDH-FT----YSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 371 -~~g---~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
... -.+.|+.-++.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 111 234455566665542 121221 22 22345567788999999999999998886656678888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CC--CHH-H
Q 006154 441 KSNNLAAAKQLLSSMIVRG-----LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-----------KP--NLV-I 501 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~--~~~-~ 501 (658)
..+++++|..+++.+.... ..++......|.-++...+++++|..+++.+.+..+ .| |-. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999987643 122344456788899999999999999999987322 12 222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..++..+...|++.+|++.++++....|.|......+...+...|.+.+|++.++...... +.+..+....+.++...
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 34556677889999999999999999999999999999999999999999999997777652 34466677888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006154 582 GCYQQARELMKVMILHGIIPDYVTYT 607 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~~~~~ 607 (658)
|++++|..+.+.+.+. .|+.....
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHH
Confidence 9999999999888875 45544333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.9e-18 Score=184.37 Aligned_cols=419 Identities=11% Similarity=-0.028 Sum_probs=228.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 44555666666666667777777777776666522 2344456666666666777777777777666542 334455556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHh
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK 301 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 301 (658)
+...+...|++++|+..++++.+... .+.. +..+..++...|+.++|+..++++ ... .+.+...+..+..++..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~a---l~~-~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQA---LPR-APQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCCCHHHHHHHHHHHHH
Confidence 66666666777777777766665522 1333 555666666666666666666663 221 11233444445555556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCH
Q 006154 302 LGRVEFAEEIRYAMIKAGIDCNV------RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 302 ~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~ 375 (658)
.|..+.|.+.++.... .|+. .....+++..... .....+++
T Consensus 163 ~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------------~~~~~~r~ 209 (765)
T PRK10049 163 NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP------------------------------TRSEKERY 209 (765)
T ss_pred CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc------------------------------ccChhHHH
Confidence 6666666665554442 1110 0000111111000 00111122
Q ss_pred ---HHHHHHHHHHHhC-CCCCChh-hHH----HHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCH
Q 006154 376 ---EGALFVLSDMIDK-HICPDHF-TYS----ILTKGLCRNGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 376 ---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 445 (658)
++|+..++.+.+. ...|+.. .+. ..+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 4455555555532 1111111 110 0122334556666666666666655422 211 112234556666666
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-----------KPN---LVIYNSIING 508 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 508 (658)
++|+..|+++....... .......+..++...|++++|...++.+.+..+ .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 66666666655432111 122334444455666666666666666655321 122 1234455666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|+.++|.+.++++....|.+...+..++..+...|++++|++.+++..... +.+...+..++..+...|++++|.
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 6777777777777777777777777777777777777777777777777777743 223455556666777777777777
Q ss_pred HHHHHHHHcCCCCCHHH
Q 006154 589 ELMKVMILHGIIPDYVT 605 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~ 605 (658)
.+++++++. .|+...
T Consensus 448 ~~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 448 VLTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHHh--CCCCHH
Confidence 777777764 444443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1e-17 Score=181.92 Aligned_cols=387 Identities=10% Similarity=-0.013 Sum_probs=252.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+.+..++..+...+.+.|++++|.+++++..+.. +.++..+..+...+.+.|++++|...++++++.. +.+.. +.
T Consensus 44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~ 120 (765)
T PRK10049 44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LL 120 (765)
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HH
Confidence 356677789999999999999999999999998874 3367778889999999999999999999999873 45566 88
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChh------hHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSV------THNC 294 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~~~~ 294 (658)
.+..++...|+.++|+..++++.+..+. +...+..+...+...|..++|++.++. ... .|+.. ....
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~---~~~---~p~~~~~l~~~~~~~ 193 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD---ANL---TPAEKRDLEADAAAE 193 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh---CCC---CHHHHHHHHHHHHHH
Confidence 8889999999999999999999987433 455666778888889999999999988 332 23210 0111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCcHh-HH----HHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS---EEALRLCDEMVKR-GLMPNNV-VY----NST 365 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~-g~~p~~~-~~----~~l 365 (658)
++...... .....+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 194 ~~r~~~~~------------------------------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 194 LVRLSFMP------------------------------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHhhccc------------------------------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 11111100 01111122 3444444444432 1111111 00 001
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHh
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHIC-PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG---DAYSYNILINYLCK 441 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 441 (658)
+..+...|++++|+..|+.+.+.+.. |+. ....+...+...|++++|...|+++.+..+.. .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22233445555555555555544321 111 11113445555555555555555554432211 11223334445555
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGL-----------IPD---IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
.|++++|...++.+..... .|+ ...+..+...+...|++++|++.++++.... +.+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 5666666666655554311 123 2234556677788899999999999888763 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY 571 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 571 (658)
.+...|++++|++.++++....|.+...+..++..+...|++++|+.+++++++. .|+....
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 8889999999999999999988888888888888889999999999999999884 4555433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.8e-16 Score=168.44 Aligned_cols=451 Identities=9% Similarity=-0.010 Sum_probs=268.2
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
.+.+....+-+..+.|+++.|...|+++.+ ..|.++.....++..+...|+.++|+..+++.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~------------------~~P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESK------------------AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHh------------------hCccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 344444444455555555555555555554 23333211125555555556666666655555
Q ss_pred HhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 173 KVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV 252 (658)
Q Consensus 173 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 252 (658)
... ...+......+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+..
T Consensus 95 ~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 95 QSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 511 01122222222345555566666666666655543 223444445555555555666666665555543 33333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh------
Q 006154 253 CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT------ 326 (658)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------ 326 (658)
.+..++..+...++..+|++.+++ +... .+.+...+..+..++.+.|-...|.++..+-...= .+....
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ek---ll~~-~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~ 245 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSE---AVRL-APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDA 245 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH---HHHh-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHH
Confidence 333333333333444445555555 2222 12234444555555555555555554444322110 000000
Q ss_pred HHHHHHHH-----HhcCC---hHHHHHHHHHHHHC-CCCCcHhH-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 327 YATLIDGY-----ARGGS---SEEALRLCDEMVKR-GLMPNNVV-----YNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 327 ~~~li~~~-----~~~g~---~~~A~~~~~~~~~~-g~~p~~~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
...+++.- ....+ .+.|+.-++.+... +..|.... ..-.+-++.+.|+..++++.|+.+...+.+.
T Consensus 246 ~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 246 AAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 00011000 01112 34455555555442 22232211 2234556778888999999999988877665
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM-----VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL------- 460 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------- 460 (658)
...+-..+.++|...++.++|..+++.+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 666788888889999999999999988876532 22333356788888889999999999988887311
Q ss_pred ------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q 006154 461 ------IPDI-ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA 533 (658)
Q Consensus 461 ------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 533 (658)
.||- ..+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|+..++.+....|.+.
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 1222 233445677888999999999999998764 44888999999999999999999999998888888899
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNI 573 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 573 (658)
.+....+.++...|++.+|..+.+.+.+. .|+......
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~ 522 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHH
Confidence 99999999999999999999999999884 455554333
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1e-15 Score=154.46 Aligned_cols=367 Identities=14% Similarity=0.077 Sum_probs=219.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
.....+..+...|++++|..++.++++ ..|.++.+|.+|..+|-..|+.+++...+-..-..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIk------------------qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIK------------------QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH------------------hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 344455556666888888888888777 46677777777777777777777777776666655
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFN 255 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 255 (658)
.++ |...|..+.....+.|++++|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.....+.|..-..
T Consensus 203 ~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~ 280 (895)
T KOG2076|consen 203 NPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE 280 (895)
T ss_pred CCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH
Confidence 433 55777777777777777777777777777764 3444444445566777777777777777777653322222222
Q ss_pred H----HHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------
Q 006154 256 M----IINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG------------ 319 (658)
Q Consensus 256 ~----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------ 319 (658)
. .+..+...++-+.|.+.++.. ....+-..+...++.++..+.+...++.|......+..+.
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~--~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGA--LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH--HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 2 234445556667777777664 2222223345556677777777777777776666655411
Q ss_pred ---------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 006154 320 ---------------IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRG--LMPNNVVYNSTIHWLFAEGDVEGALFVL 382 (658)
Q Consensus 320 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 382 (658)
..++..+ .-++-++......+....+........ +.-+...|.-+..+|...|++.+|+.++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222 011222223333333333333333333 2224456667777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 006154 383 SDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR---- 458 (658)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 458 (658)
..+......-+...|-.+..+|...|..++|.+.|+.++...+. +...-..|...+.+.|+.++|.+++..+...
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 77776644445667777777777777777777777777766433 4445556666677777777777777765421
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 459 ----GLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 459 ----~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
+..|+........+.+.+.|+.++-+.+
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2223333333344455556666554443
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.3e-14 Score=140.95 Aligned_cols=555 Identities=14% Similarity=0.040 Sum_probs=365.0
Q ss_pred ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCC-----------CChHHHHHHHHhh-cc
Q 006154 73 SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANS-----------VSPLEFLEGLLDS-YE 140 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~-~~ 140 (658)
|..+|...+..+.... +..+..+.+-++.--..|.+..|+.++.+-.+... .++.++-..++.. ..
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3466777777766543 44455666667777777888888888776555311 2233332222221 11
Q ss_pred CCCCCHHHHHHHH---------------------------HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 006154 141 ICKATPAVFDALV---------------------------RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK 193 (658)
Q Consensus 141 ~~~~~~~~~~~l~---------------------------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 193 (658)
..|.++..|..-+ .+-....+.++|.-++.+..+. ++.+... ..+|.+
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~dL----wlAlar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMDL----WLALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHH----HHHHHH
Confidence 2333333332211 1222234444555555555553 2223333 345566
Q ss_pred cCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 194 LNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRM----LKSGIWPNVVCFNMIINEACQVGDLEF 269 (658)
Q Consensus 194 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~ 269 (658)
...|+.|..++.+..+. ++.+...|.+-...--..|+.+...+++.+- ...|+..+...|..=...+-..|..-.
T Consensus 419 LetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhh
Confidence 67778888888887765 5667777777666666778887777776653 345777777777777777777777777
Q ss_pred HHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 270 ALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 270 A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+..+... ..+-|+... ..||+.-.+.|.+.+.++-|..+|....+.- +.+...|...+..--..|..++...++
T Consensus 498 cQAIi~a---vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 498 CQAIIRA---VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred HHHHHHH---HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 7777776 455444322 4677778888888888888888888877653 556667777766666778888888888
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006154 348 DEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG 427 (658)
Q Consensus 348 ~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (658)
++....-. -....|......+...|++..|..++....+.... +...+-.-+.....+.+++.|..+|.+.... .|
T Consensus 574 qkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sg 649 (913)
T KOG0495|consen 574 QKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SG 649 (913)
T ss_pred HHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC
Confidence 88877632 24455666666777788888888888888876444 6667777777778888888888888887764 45
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...|.--++..--.++.++|.+++++.++. ++.-...|-.+.+.+.+.++.+.|.+.|..-.+. ++..+..|..+..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 6677777677777778888888888887775 3323556777777888888888888888776654 3445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.--+.|.+-.|..++++....+|.+...|...+.+-.+.|..+.|..+..+.++. ++.+...|..-|...-+.++-..+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 6667788888888888888888888888888888888888888888887777654 344455555555555454444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN-QTYNAIISPLLGEKS 653 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 653 (658)
...+++. +-|++....+...+....++++|.++|.+.++. .||. .+|.-+..-....|.
T Consensus 807 ~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 807 IDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCC
Confidence 3333332 235555555666666666677777777766653 3433 556666665555553
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=5.9e-14 Score=136.45 Aligned_cols=474 Identities=10% Similarity=0.017 Sum_probs=390.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH----hCCCCcCH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV----SCGYVENV 216 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~~~~ 216 (658)
-+|.+...|. +|.+..-++.|..++....+. ++.+...|-+-...--.+|+.+...++.++-+ ..|+..+.
T Consensus 405 ccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~r 479 (913)
T KOG0495|consen 405 CCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINR 479 (913)
T ss_pred hccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecH
Confidence 4666666665 455667789999999999986 66689999888888888999999988887654 56888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH
Q 006154 217 NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN--VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC 294 (658)
Q Consensus 217 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 294 (658)
..|-.=...+-+.|.+-.+..+....+..|++-. ..||+.-...|.+.+.++-|..+|... ..- ++-+...|..
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a---lqv-fp~k~slWlr 555 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA---LQV-FPCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH---Hhh-ccchhHHHHH
Confidence 8888888888889999999999999888877633 348888889999999999999999883 332 4446778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
....--..|..++-..+|++....- +.....|-.....+-..|+...|..++....+.... +...|...+.....+.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcccc
Confidence 8887778899999999999999873 556666777778888899999999999999887544 77789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
++.|..+|.+... ..|+...|..-+....-.++.++|.+++++.++.-+. -...|..+...+-+.++.+.|.+.|..
T Consensus 634 ~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 634 LERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred HHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999998876 5677888887777777889999999999999987432 345788888889999999999999887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 455 MIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 455 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
-.+. ++..+..|-.+...--+.|++-.|..+++...-.++. +...|...|.+-.+.|..+.|..++.++.+..|.+..
T Consensus 711 G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 711 GTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred cccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch
Confidence 6654 4445667777777778889999999999999887655 8889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
.|..-|...-+.++-..+...++ + +.-|++....+...+....++++|.+.|.+.+..+ +.+..+|.-+...+.
T Consensus 789 LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL 862 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence 99999988877777555444433 3 45577888889999999999999999999999863 335668888888899
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH
Q 006154 615 KNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
+.|.-++-.+++++..+ ..|..
T Consensus 863 ~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HhCCHHHHHHHHHHHhc--cCCCC
Confidence 99999999999999887 45554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1e-16 Score=148.58 Aligned_cols=485 Identities=14% Similarity=0.085 Sum_probs=297.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC------HH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAW-NNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN------VN 217 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~ 217 (658)
+-.++..|...|..+....+|+..++.+.+...-|+.-.. -.+..++.+.+++.+|++.|+..+.. .|+ +.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 3455666788888899999999999999987776665433 34566788999999999999988865 333 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh------
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT------ 291 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------ 291 (658)
..+.+...+.+.|.+++|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.++..+. ..||..-
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip---~~~dddkyi~~~d 352 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP---GEIDDDKYIKEKD 352 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC---CCCCcccccCCcC
Confidence 4555556688999999999999998875 5787766666767777899999999999853221 1122111
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCcHhH
Q 006154 292 --HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTY----ATLIDGYARGGS----SEEALRLCDEMVKRGLMPNNVV 361 (658)
Q Consensus 292 --~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~----~~~A~~~~~~~~~~g~~p~~~~ 361 (658)
-..|+.-..+.. .++.|.+.+ +.+..-+ .-+|.- .-.-+ .+-.++.++.-....+..+.
T Consensus 353 dp~~~ll~eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dl-- 421 (840)
T KOG2003|consen 353 DPDDNLLNEAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDL-- 421 (840)
T ss_pred CcchHHHHHHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhh--
Confidence 112222222211 112222111 0010000 000000 00001 11111111111100000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR--NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL 439 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (658)
-..-...+.++|+++.|+++++-..++.-+.....-+.|...+.- ..++..|.++-+..+...-- +......-.+..
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCcee
Confidence 001123466788888888888777666443333333333322222 33566666665555433211 222221122223
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006154 440 CKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 519 (658)
...|++++|.+.+++.......-....|++ .-.+.+.|+.++|++.|-++... ...+..+...+...|-...+...|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 346788888888888776522212222332 22355678888888888776553 3346667777777777788888888
Q ss_pred HHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 520 SLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
+++.+....-|.|+.++..|...|-+.|+-..|.+.+-+--+. ++-|..+...|..-|....-+++|+..|++..- +
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 8888887777778888888888888888888887766554443 456777777787778887788888888887764 6
Q ss_pred CCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCC
Q 006154 600 IPDYVTYTTLVTRF-SKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654 (658)
Q Consensus 600 ~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 654 (658)
+|+..-|..++..| .+.|++++|.++++..-.+ ++-|..+...|++.+...|..
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 78888887777654 4578888888888887764 677778888888877776654
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=5.5e-15 Score=136.39 Aligned_cols=418 Identities=15% Similarity=0.178 Sum_probs=257.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 157 TQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN---EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
...|.+.++.-+|+.|.+.|+..++..-..|+..-+-.+ -+-.-++.|-.|...| ..+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 456889999999999999998888877666665433322 2223355566666554 2223333 345443
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
+ ++-+.. +-+..+|..+|.++|+--..+.|.+++++ ......+.+..+||.+|.+-.-. ...+++.
T Consensus 197 d---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE---~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 197 D---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKE---HRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred H---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHH---HHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 3 332322 22566888888888888888888888888 55555667778888887654322 2267788
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEE----ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG-ALFVLSDMIDK 388 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~ 388 (658)
+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 88888888888888888888888887764 45777788888888888888888888887776543 44444444321
Q ss_pred ----CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 389 ----HIC----PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEH----MVGD---AYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 389 ----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..+ .|...+...+..|....+.+-|.++..-..... +.|+ ..-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 234455666667777777777776665544321 1122 2235566777778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--H-----------HHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-SL--D-----------AAK 519 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~-----------~a~ 519 (658)
.|+-.-.-|+..+...++.+..-.|.++-.-+++.+++..|..-+...-..++..+++.. .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 888776777878877788887778888888888888877665544444444444444332 11 0 011
Q ss_pred HHHHHHH-----HcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCChHHHH---HHHHHHHhcCCHHHHHH
Q 006154 520 SLLQASQ-----RIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVG-IAVNKVGYN---ILINFLCKFGCYQQARE 589 (658)
Q Consensus 520 ~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~ 589 (658)
.+++... ..... .+...+..+..+.+.|+.++|.+++.-+.+.+ --|-....| .+++.-...++...|+.
T Consensus 503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 1111100 00111 45555555566666666666666666664322 112222233 34444445556666666
Q ss_pred HHHHHHHc
Q 006154 590 LMKVMILH 597 (658)
Q Consensus 590 ~~~~~~~~ 597 (658)
.++-|...
T Consensus 583 ~lQ~a~~~ 590 (625)
T KOG4422|consen 583 VLQLASAF 590 (625)
T ss_pred HHHHHHHc
Confidence 66666543
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.9e-14 Score=130.21 Aligned_cols=427 Identities=17% Similarity=0.189 Sum_probs=309.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc--CCHHH-HHHHHHHHHhCCCCCChhhHHHH
Q 006154 181 IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE--CKLEE-ALSLYYRMLKSGIWPNVVCFNMI 257 (658)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 257 (658)
+.+=|.|+. +...|....+.-+|+.|...|++.+...-..|++..+-. .++.- -.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 344555555 345788999999999999999988888887777755433 33322 23445555554432 33444
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
+.|++.+ -+|+. .+.+..++.++|.++|+--..+.|.+++++......+.+..++|.+|.+-.-.
T Consensus 191 -----K~G~vAd--L~~E~--------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET--------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH--HHHhh--------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 3455544 34443 23367899999999999999999999999998887788999999999765432
Q ss_pred CChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-
Q 006154 338 GSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG----ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ- 412 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 412 (658)
...+++.+|....+.||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 256 ----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 ----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred ----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 227899999999999999999999999999998765 46788999999999999999999999999888644
Q ss_pred HHHHHHHHHH----cCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhc
Q 006154 413 AFKLHNQVLE----EHMVG----DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG----LIPD---IITYGTLIDGYCKG 477 (658)
Q Consensus 413 a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~ 477 (658)
+..+..++.. +...| |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444433 22333 44556777888889999998888776555431 2233 23356677788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcC-CH------
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFING-KI------ 549 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~------ 549 (658)
...+.-...|+.|.-.-.-|+..+...++++....+.++-..+++.++...|.. +.....-++..+++.. +.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999999998778889999999999999999999999999999988865 5555555555555544 11
Q ss_pred --HH-----HHHHH-------HHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC---CCHHHHHHHHH
Q 006154 550 --AE-----AFAMF-------SEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG-II---PDYVTYTTLVT 611 (658)
Q Consensus 550 --~~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~---p~~~~~~~l~~ 611 (658)
.. |..++ .++..... .....+..+-.+.+.|+.++|.+++..+.+.+ -. |......-++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 11 11111 22233333 34445666777889999999999999996553 22 33333445666
Q ss_pred HHHhCCChHHHHHHHHHHHHCC
Q 006154 612 RFSKNCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~g 633 (658)
.-.+.+++..|...++-|.+.+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 6777889999999999997754
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.9e-13 Score=126.84 Aligned_cols=472 Identities=12% Similarity=0.078 Sum_probs=351.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCH-HHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENV-NTFNLVI 223 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~l~ 223 (658)
+...|......=..++++..|..+|++.+... ..+...|...+..-.++.+...|..+++..+..- |-+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 34556666666677889999999999999876 4488889999999999999999999999999752 332 3445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
.+--..|++..|.++|++-.+ ..|+..+|++.|+.-.+.+.++.|..++++. .- +.|++.+|......-.+.|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerf---V~--~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERF---VL--VHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH---he--ecccHHHHHHHHHHHHhcC
Confidence 555567999999999999887 4899999999999999999999999999994 43 5689999999999999999
Q ss_pred ChHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHHhcCCHHHHHH
Q 006154 304 RVEFAEEIRYAMIKA-G-IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIHWLFAEGDVEGALF 380 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~ 380 (658)
.+..|..+++...+. | -..+...+.+....-..+..++.|.-+|+-....=.+.. ...|.....-=-+-|+.....+
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 999999999988765 2 012334455555555567888999999888776522211 3344444444444566444333
Q ss_pred H--------HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHH--------HHHHHhcC
Q 006154 381 V--------LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY-SYNIL--------INYLCKSN 443 (658)
Q Consensus 381 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~ 443 (658)
. ++.++.. .+.|-.++-..++.-...|+.+...++|+..+..-++.+.. .|... +-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 3444444 33477788888888888899999999999998764332211 12111 12223478
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 519 (658)
+.+.+.++++..++. ++....||.-+--.| .++.+...|.+++...+ |..|...++...|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 899999999998884 444566665544333 46788999999998876 56789999999999999999999999
Q ss_pred HHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 520 SLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
+++++..+-+|.+..+|......-...|+.+.|..+|.-+.+... .-....|.+.|+.-...|.++.|..+++++++.
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r- 536 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR- 536 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999887421 112445677777778899999999999999975
Q ss_pred CCCCHHHHHHHHHHHH-----hCC-----------ChHHHHHHHHHHHHC
Q 006154 599 IIPDYVTYTTLVTRFS-----KNC-----------SPEEVIELHDDMVLS 632 (658)
Q Consensus 599 ~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~~ 632 (658)
.+...+|-++...-. +.| ....|..+|++....
T Consensus 537 -t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 537 -TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred -cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 445556666554322 334 456788888876553
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.1e-12 Score=120.07 Aligned_cols=465 Identities=12% Similarity=0.104 Sum_probs=349.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 006154 99 AIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS 178 (658)
Q Consensus 99 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 178 (658)
.-+..--..+++..|+++++.++. ....+...|...+.+=.++..+..|..++++....-+.
T Consensus 78 kYaqwEesq~e~~RARSv~ERALd------------------vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALD------------------VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh------------------cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 333444445678889999988886 56678888999999999999999999999999886444
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
.| ..|...+.+--..|+...|.++|+.-... .|+...|++.|+.-.+-++.+.|..+|++.+-. .|++.+|....
T Consensus 140 Vd-qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikya 214 (677)
T KOG1915|consen 140 VD-QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYA 214 (677)
T ss_pred HH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHH
Confidence 33 35666666667789999999999999875 799999999999999999999999999998764 69999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHh
Q 006154 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYAR 336 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 336 (658)
..--+.|....|..+++......... ..+...+.+....-.++..++.|.-+|+-..+.- +.+ ...|..+...--+
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDD-EEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHH
Confidence 98899999999999999863333321 1123445555555566778899999999888762 222 3344444444344
Q ss_pred cCCh---HHHHH-----HHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-h-hHHHHH-----
Q 006154 337 GGSS---EEALR-----LCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDH-F-TYSILT----- 401 (658)
Q Consensus 337 ~g~~---~~A~~-----~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~----- 401 (658)
-|+. ++++- -++.+.+.+ .-|..+|-..+..-...|+.+...++|++.+.. ++|-. . .+...|
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHH
Confidence 4553 33321 233444443 337788888888888899999999999999986 44421 1 122111
Q ss_pred ---HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 402 ---KGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNIL----INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 402 ---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
-.-....+++.+.++++..++. ++....||.-+ .....++.++..|.+++...+ |..|...+|...|..-
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 1123567899999999998884 33344555444 444557889999999998876 4578999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHH
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+.+++|....+|++.++.++. +..+|......-...|+.+.|..+|+-+...... ....|.+.|+.-...|.+++|
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 9999999999999999997554 7788888888888899999999999998877654 677889999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLC-----KFG-----------CYQQARELMKVMIL 596 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 596 (658)
..+++++++. .+....|.+....-. +.| .+..|.++|+++..
T Consensus 527 R~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 527 RALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 9999999885 345556666554433 334 56778888888664
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=4.6e-13 Score=135.58 Aligned_cols=359 Identities=13% Similarity=0.054 Sum_probs=256.5
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHH
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVF 149 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 149 (658)
.+++.+.|.+.+.-+.++. +-.+.+|.+++.++-..|+.+.+....-.+.. -.|.+...|
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH------------------L~p~d~e~W 210 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH------------------LNPKDYELW 210 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh------------------cCCCChHHH
Confidence 4689999999999999876 66788999999999999999888765443332 567788999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHH----HHHHHH
Q 006154 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTF----NLVIYA 225 (658)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~ 225 (658)
..+.....+.|++++|.-.|.+.++..+. +....-.-...|-+.|+...|..-|.++.....+.|..-. -.++..
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998544 4555555677899999999999999999987533333222 234556
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhccc------------------------
Q 006154 226 LCKECKLEEALSLYYRMLKSG-IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVM------------------------ 280 (658)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------ 280 (658)
+...++.+.|.+.++.....+ -.-+...++.++..+.+...++.|..........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 677788899999998877632 2235567889999999999999998888773210
Q ss_pred ccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc
Q 006154 281 SGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG--IDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN 358 (658)
Q Consensus 281 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 358 (658)
...+..++... ..+.-++.+....+...-+.....+.. ...++..|.-+..+|...|++.+|+.+|..+......-+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 00111222222 123334445555555666666666665 334567788888889999999999999988887765556
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChh
Q 006154 359 NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE--------HMVGDAY 430 (658)
Q Consensus 359 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 430 (658)
...|-.+..+|...|..++|.+.|+..+...+ .+...--.|...+.+.|+.++|.+.++.+... +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 77888888899999999999999988887532 24455556667778889999888888875422 2233333
Q ss_pred hHHHHHHHHHhcCCHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQL 451 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~ 451 (658)
........+.+.|+.++=..+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 333444555566665554433
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=6.7e-14 Score=130.17 Aligned_cols=442 Identities=13% Similarity=0.056 Sum_probs=291.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccC----HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHH-HHHHHHHH
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVS----IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNT-FNLVIYAL 226 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~l~~~~ 226 (658)
+.+.+.+..++.+|++.++-.+..-+..+ ....+.+...+.+.|+++.|+..|+...+. .|+..+ +|.++ .+
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i-~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII-CA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh-hh
Confidence 55678888999999999988877533322 234555555678899999999999999886 577654 55544 44
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHHhcCC--------HHHHHHHHHHhcccccCCcCCChh
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCF--------NMIINEACQVGD--------LEFALKLFRKMGVMSGDSVLPNSV 290 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~ 290 (658)
..-|+-++..+.|.+|+.....||..-| ..|+.--.+... -..|++..-....+...-+.|+-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 4578999999999999875433332211 122221111111 111111111100012211222211
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 006154 291 -THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL 369 (658)
Q Consensus 291 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 369 (658)
.|.-.+..+-.....+.|.+ .--.-...|.++|+++.|.++++-+.+..-+.-...-+.|-..+
T Consensus 400 ~g~dwcle~lk~s~~~~la~d---------------lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~ 464 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAID---------------LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALR 464 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhh---------------hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHH
Confidence 01111111111111111111 11112345789999999999999888764332222333332222
Q ss_pred Hh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 370 FA--EGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 370 ~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.- ..++..|.+.-+..+... .-+......-.+.....|++++|.+.+++.+.....-....|| +.-.+-..|++++
T Consensus 465 flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~lde 542 (840)
T KOG2003|consen 465 FLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDE 542 (840)
T ss_pred HHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHH
Confidence 22 346777777776665431 1122233222333456799999999999999864322222222 2334677899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|++.|-++... +..+....-.+...|.-..+..+|++++.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+--+
T Consensus 543 ald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 543 ALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 99999877653 2236667777888898999999999999998776 667899999999999999999999998877777
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF-LCKFGCYQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
-.|.+..+..-|..-|....-+++|+.+|++..- +.|+..-|..++.. +.+.|++++|.++++....+ ++-|....
T Consensus 621 yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldcl 697 (840)
T KOG2003|consen 621 YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCL 697 (840)
T ss_pred ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHH
Confidence 7777888888899999999999999999999876 68999999988765 45789999999999999876 77788888
Q ss_pred HHHHHHHHhCCC
Q 006154 607 TTLVTRFSKNCS 618 (658)
Q Consensus 607 ~~l~~~~~~~g~ 618 (658)
.-|+..+...|.
T Consensus 698 kflvri~~dlgl 709 (840)
T KOG2003|consen 698 KFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhccccc
Confidence 888888877774
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.3e-13 Score=127.69 Aligned_cols=287 Identities=13% Similarity=0.100 Sum_probs=236.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 006154 356 MPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNIL 435 (658)
Q Consensus 356 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 435 (658)
.-+........+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-.++.+..+. .+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 335555666667788889999999999999986 4456667777777899999998888888888888655 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 515 (658)
.-.|...|+..+|.+.|.+....... -...|-.+...|+-.|..|+|+..+..+.+. ++-....+.-+.--|...++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 99999999999999999987764321 2457888889999999999999999888765 222333444556667889999
Q ss_pred HHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CChHHHHHHHHHHHhcCCHHHHHH
Q 006154 516 DAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV--GIA----VNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
+.|.+.|.++....|.|+..++-+.-.....+.+.+|..+|+..+.. ... --..+++.|+++|.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999988631 011 134568999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
.+++.+.. .+-+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999987 355888999999999999999999999999986 7999988887776554
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.2e-11 Score=115.92 Aligned_cols=329 Identities=11% Similarity=0.023 Sum_probs=161.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC--h
Q 006154 212 YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN--S 289 (658)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~ 289 (658)
...|...+-.....+.+.|..+.|++.|...... -+..|.+.+....-..+.+.+..+... .+.| .
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~--------l~~~~h~ 227 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVG--------LPSDMHW 227 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhc--------CcccchH
Confidence 3445555555555566777888888888776643 223344433333223333333332222 1111 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CcHhHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM--PNNVVYNSTIH 367 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~ll~ 367 (658)
..---+..++-.....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1111233455555566677766677776776655555555555666677777777777777765210 14455555443
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.--....+ ..+.+-.-.--+--+.|...+.+-|.-.++.++|...|+..++.++. ....|+.+.+-|....+...
T Consensus 308 v~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 VKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 22211111 11111110001112234444445555555555555555555555433 34445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|.+-++..++-.. .|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|.+.|..+..
T Consensus 383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 5555555554322 244445555555555555555555555555432 22444555555555555555555555555555
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.+..+..++..|+..|-+.++.++|...|++.
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444455555555555555555555544444
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=5.1e-13 Score=133.91 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 521 (658)
..+.+...++++.+... .+.+......+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+.
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 33445555555555432 2346667777888888888888888888888774 3444322 23333455888888888
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+...+..|.|+..+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888888888999999999999999888884 68888888888888899999999888887754
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-11 Score=116.47 Aligned_cols=385 Identities=13% Similarity=0.068 Sum_probs=278.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 006154 246 GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVR 325 (658)
Q Consensus 246 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 325 (658)
+..-|..-+-.....+.+.|....|++.|... ... .+-....|..|.... .+. ++...... +.+.|..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~---v~~-~P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEV---VNR-YPWFWSAWLELSELI---TDI----EILSILVV-GLPSDMH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHH---Hhc-CCcchHHHHHHHHhh---chH----HHHHHHHh-cCcccch
Confidence 34446555555555667789999999999883 221 233444444443332 222 22222222 2232222
Q ss_pred hHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHH
Q 006154 326 TYA--TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI--CPDHFTYSILT 401 (658)
Q Consensus 326 ~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 401 (658)
... .+..++-...+.+++..-.......|+.-+...-+....+.....++++|+.+|+++.+..+ --|..+|..++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 211 23455656668888888888888888776666666666777888999999999999998742 12566777665
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 481 (658)
-. +..+- .+.++..-.-.--+--+.|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+..
T Consensus 307 Yv--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 307 YV--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HH--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccH
Confidence 43 32221 1222222211111224567888899999999999999999999987543 5678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|++.|+.+++..+ -|...|-.+.++|.-.+.+.-|+-.|+++....|.|...|.+|+.+|.+.++.++|+.-|.....
T Consensus 382 AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 382 AAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999744 48889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH----GIIPDYVT--YTTLVTRFSKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
.| ..+...+..|.+.|.+.++.++|.+.+++.++. |...+... ..-|...+.+.+++++|..+...... | .
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~ 537 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-E 537 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-C
Confidence 76 336688999999999999999999999987753 33322222 22244457789999999988877765 3 7
Q ss_pred CCHHHHHHHHHHhhcC
Q 006154 636 PDNQTYNAIISPLLGE 651 (658)
Q Consensus 636 p~~~~~~~l~~~~~~~ 651 (658)
+...--..|++.+.+.
T Consensus 538 ~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 538 TECEEAKALLREIRKI 553 (559)
T ss_pred chHHHHHHHHHHHHHh
Confidence 7777777787777654
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=8.1e-13 Score=133.30 Aligned_cols=133 Identities=10% Similarity=0.010 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--hhHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY-NSIINGLCKDASLDAAKSLLQASQRIGLLDA--ITYNTL 539 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l 539 (658)
+...+..+...+...|+.++|.+++++..+..+......+ ....-.....++.+.+.+.++...+..|.++ ....++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 5555566666666667777777777666664322111110 1111112234566667777777777766666 666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777777743333345676667777777777777777777777654
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5.5e-13 Score=119.10 Aligned_cols=310 Identities=14% Similarity=0.162 Sum_probs=238.2
Q ss_pred hhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHH
Q 006154 53 QMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFL 132 (658)
Q Consensus 53 ~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (658)
....+++.+.+..+-..+.+.|++|.+.|.-+.+.. +.+.++..++++.+.+.|+.++|..+.+.++++++.....
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~q-- 105 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQ-- 105 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHH--
Confidence 345668889998887777889999999999998643 6678889999999999999999999999998864433222
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006154 133 EGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY 212 (658)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 212 (658)
...+...|.+-|...|-++.|+++|..+.+.|. .-..+...|+.+|....+|++|+++-+++.+.+.
T Consensus 106 ------------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 106 ------------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 124556688999999999999999999988542 3566788999999999999999999999998875
Q ss_pred CcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 213 VEN----VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 213 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
.+. ...|..+...+....+++.|..++.+..+.+.+ .+.+-..+.+.....|+++.|.+.++. ..+.+..--
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~---v~eQn~~yl 248 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALER---VLEQNPEYL 248 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHH---HHHhChHHH
Confidence 544 335667777777788999999999999887433 444555677888899999999999999 555544444
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
..+...|..+|...|+.++....+..+.+. .++...-..+.+.-....-.+.|...+.+-... +|+...+..++..
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 667788889999999999999999998877 344445555555555555666676666665555 6888888888886
Q ss_pred HHhc---CCHHHHHHHHHHHHh
Q 006154 369 LFAE---GDVEGALFVLSDMID 387 (658)
Q Consensus 369 ~~~~---g~~~~a~~~~~~~~~ 387 (658)
.... |...+.+..+++|..
T Consensus 325 ~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 325 HLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred hhccccccchhhhHHHHHHHHH
Confidence 6543 345555666666654
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=1.4e-12 Score=131.67 Aligned_cols=292 Identities=13% Similarity=0.031 Sum_probs=204.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 335 ARGGSSEEALRLCDEMVKRGLMPNN-VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQA 413 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (658)
...|+++.|.+.+.+..+. .|+. ..+-.....+...|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567888888877776665 2332 233344566677788888888888776543222222333346677778888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCChHHHHHHHHH
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG-TLID---GYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~~ 489 (658)
.+.++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888887654 6667778888888888888888888888877654 333221 1111 11222333333445555
Q ss_pred HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 490 MKKVEK---KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY--NTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 490 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
+.+... +.+...+..+...+...|+.++|.+++++..+..+++.... ..........++.+.+.+.+++..+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 554322 23788889999999999999999999999999988754321 222223344578889999998888752
Q ss_pred CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 565 AVNK--VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 565 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 566789999999999999999999644444589999999999999999999999999998654
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-12 Score=120.56 Aligned_cols=218 Identities=12% Similarity=0.016 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|+...|.+-|+..++....++ ..|-.+...|....+.++..+.|++..+.+.. ++.+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 4556666666666666544422 22555556666666666666666666655332 444555555555555666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
|++.++..+. +...|-.+.-+..+.++++++...|++..+..|..+..|+.....+..++++++|.+.|+..++. .|
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 6666664222 34444444444556666777777777777666666666666666777777777777777666653 22
Q ss_pred C-------hHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 N-------KVGY--NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+ ..++ ..++..-.+ +++..|.+++.++.+...+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 1111 112211122 6666677777666654211 234566666666666777777777666543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2.2e-12 Score=129.35 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=199.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCChHHH
Q 006154 337 GGSSEEALRLCDEMVKRGLMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYS--ILTKGLCRNGCVKQA 413 (658)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 413 (658)
.|++++|.+.+....+.+- ++.. |........+.|+.+.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 5677777766665444321 1222 222233446677777777777777653 33332222 335566677777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-------ITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.+.++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777777644 6667777777778888888888888777776544222 1223333333344556666677
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
++.+.+. .+.++.....+...+...|+.++|.+++++..+..+ ++... ++.+....++.+++++..++..+.. +-
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 7666443 345788889999999999999999999999988533 44222 3344456699999999999998863 45
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|...+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667889999999999999999999999984 79999999999999999999999999998765
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3e-11 Score=116.42 Aligned_cols=454 Identities=13% Similarity=0.035 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHH----HHhCC--------
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKE----MVSCG-------- 211 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----~~~~g-------- 211 (658)
.+|....-++.++.-.|+++.|..+...-.-. ..|..+.......+.+..++++|..++.. +....
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~ 124 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAAN 124 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhc
Confidence 44555556777777777777777776654322 33566666667777777777777777762 11100
Q ss_pred -CCcCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHhc
Q 006154 212 -YVENVN-----------TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQV-GDLEFALKLFRKMG 278 (658)
Q Consensus 212 -~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 278 (658)
+.+|.. .+-.-...|....++++|...|.+.... |...+..+....... --.++-..+|+.+
T Consensus 125 ~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l- 199 (611)
T KOG1173|consen 125 TLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESL- 199 (611)
T ss_pred eeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcc-
Confidence 000100 0111112334455677788888777654 444443333221111 1112223333320
Q ss_pred ccccC-CcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 279 VMSGD-SVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 279 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
.-. -...+......+.....-...-++....-++..-.+...+......-.+-+...+++.+..++.+.+.+.. .+
T Consensus 200 --~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pf 276 (611)
T KOG1173|consen 200 --DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PF 276 (611)
T ss_pred --cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CC
Confidence 000 00111111111111110000011111111111112334566666667777888899999999999988763 33
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
....+-.-|.++...|+..+-..+=.++++. .+-...+|-++..-|...|+..+|.+.|.+....+.. -...|-.+.+
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fgh 354 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGH 354 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhH
Confidence 5556666677888899988888888888876 4447788888888888889999999999988766433 4567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
.|.-.|..+.|+..+...-+. ++-...-+--+.--|.+.++.+.|.++|.+.... .+.|+...+-+.-.....+.+.+
T Consensus 355 sfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999988777654 1111112223344577889999999999998876 34477788888777778889999
Q ss_pred HHHHHHHHHHcCCC-------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 518 AKSLLQASQRIGLL-------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 518 a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
|..+|+.....-.. -..+++.|+++|.+.+.+++|+..+++.+... +.+..++.+++-.|...|+++.|++.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHH
Confidence 99999887633221 34568899999999999999999999998863 56888999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 591 MKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 591 ~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
|.+.+. +.|+..+-..++..+.
T Consensus 512 fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHh--cCCccHHHHHHHHHHH
Confidence 999885 5788766666665443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.5e-12 Score=117.74 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=138.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 335 ARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAF 414 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (658)
.-.|+.-.|..-|+..++....++. .|-.+...|....+.++....|.+..+.+.. ++.+|..-.....-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3456777777777777766433222 2555666677777777777777777765443 5556666666666666777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006154 415 KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE 494 (658)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 494 (658)
.-|++.....+. +...|-.+.-+..+.+++++++..|++.+++ ++..+..|+.....+...++++.|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 777777766544 5566666666666777777777777777765 44456667777777777777777777777766532
Q ss_pred CC-----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 495 KK-----PN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 495 ~~-----~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.. .+ +.+..+++.. .-.+++..|..+++++.+.+|....+|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 01 1111111111 1236666666666666666666666666666666666666666666666544
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=4.5e-15 Score=142.24 Aligned_cols=259 Identities=16% Similarity=0.146 Sum_probs=84.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKH-ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN 444 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 444 (658)
...+.+.|++++|++++++..... .+.|...+..+.......++.+.|.+.++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555556666666554433332 1223333333444444555666666666666555433 44445555554 46666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 445 LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE-KKPNLVIYNSIINGLCKDASLDAAKSLLQ 523 (658)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 523 (658)
+++|.+++....++. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554432 344445555666666666666666666655432 23455566666666666777777777777
Q ss_pred HHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 524 ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
++.+..|.+......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+..+++..... +.|+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 7777766666666667777766777766666666665542 3444555666667777777777777777766541 3356
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.+...+..++...|+.++|.++..+..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 666666666777777777776666554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=3.2e-15 Score=143.22 Aligned_cols=262 Identities=17% Similarity=0.136 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKG-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 229 (658)
.+...+.+.|++++|++++....... .+.++..|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777888888888888886554443 2335556666666667778888888888888876532 45566666665 677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHH
Q 006154 230 CKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAE 309 (658)
Q Consensus 230 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 309 (658)
+++++|.+++++..+. .++...+..++..+...|+++++.++++.+. .....+.+...|..+...+.+.|+.++|.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888887776554 2455566677777778888888888887742 22223456667777777778888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006154 310 EIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH 389 (658)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 389 (658)
+.+++..+.. |.|......++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|+.++++.....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 8888877764 4456677777777777787777777777766553 2345566667777777777777777777776642
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 390 ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
+.|+.+...+..++...|+.++|.++..++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2366666777777777777777777766554
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=9.7e-12 Score=114.94 Aligned_cols=290 Identities=14% Similarity=0.099 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVL 382 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 382 (658)
|++..|++...+-.+.+ +.....|..-+++.-..|+.+.+-.++.+.-+..-.++...+-+........|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555555444443 22233333344444445555555555555544433333444444444455555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 383 SDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDA-------YSYNILINYLCKSNNLAAAKQLLSSM 455 (658)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 455 (658)
+++.+.+.. .+........+|.+.|++.+...++..+.+.+.-.+. .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555544333 3444455555555555555555555555555443332 34555555555555555555566555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhh
Q 006154 456 IVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAIT 535 (658)
Q Consensus 456 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 535 (658)
..+ ...++..-..++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+.++...-.+..++..+..+.++..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 443 2334555566777788889999999998888887776652 22223456778888888888888888888889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
+.+|+..|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++....-.+|
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987774 6889999999999999999999998888876443333
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=1.5e-09 Score=106.56 Aligned_cols=438 Identities=15% Similarity=0.102 Sum_probs=251.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.|....+.....-.+...|+-++|.+........++. +.+.|..+.-.+....++++|++.|+.....+ +.|...+.-
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRD 114 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4444455555666666778888888877777765444 66777777777777778888888888888765 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHH-----
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCII----- 296 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li----- 296 (658)
+.-.-.+.|+++.....-.+..+... .....|..+..++.-.|+...|..++++.+.... -.|+...+....
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHH
Confidence 66666667777777666666665421 1344677777777777888888888777422221 234444333222
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHH-hcCC
Q 006154 297 -NGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF-AEGD 374 (658)
Q Consensus 297 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~g~ 374 (658)
....+.|.+++|.+.+..-...- ......-.+-...+.+.+++++|..++..+... .||...|+..+..+. +-.+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d 268 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKD 268 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhh
Confidence 34455677777766665554321 111222233455667778888888888888776 466666555444333 3333
Q ss_pred HHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 375 VEGAL-FVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 375 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..+++ .+|....+. ++-.......=++...-..-.+..-+++....+.|+++ ++..+...|-.....+-..++.-
T Consensus 269 ~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 269 MLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred hHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHH
Confidence 34444 455544433 11011101111111111111233334555556666542 33333333332222221112211
Q ss_pred HHHH----CC----------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 006154 454 SMIV----RG----------LIPDIITYG--TLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYNSIINGLCKDASLD 516 (658)
Q Consensus 454 ~~~~----~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 516 (658)
.+.. .| -+|....|+ .++..+-+.|+++.|...++....+ .|+ +..|..-.+.+...|+++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~ 422 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLD 422 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChH
Confidence 1111 11 134444443 4566777888888888888888764 333 345555567777888888
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--------HHH--HHHHHHhcCCHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG--------YNI--LINFLCKFGCYQQ 586 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~--l~~~~~~~g~~~~ 586 (658)
+|..++++..+.+..|...-..-+.-..+.++.++|.++.....+.|. +... |-. =+.+|.+.|++.+
T Consensus 423 eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 423 EAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 888888888887766665555666666778888888888888777653 2221 211 2356777777777
Q ss_pred HHHHHHHHH
Q 006154 587 ARELMKVMI 595 (658)
Q Consensus 587 A~~~~~~~~ 595 (658)
|++-|....
T Consensus 501 ALKkfh~i~ 509 (700)
T KOG1156|consen 501 ALKKFHEIE 509 (700)
T ss_pred HHHHHhhHH
Confidence 776665544
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.9e-12 Score=125.95 Aligned_cols=284 Identities=12% Similarity=0.062 Sum_probs=182.8
Q ss_pred ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 006154 339 SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH--ICPDHFTYSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (658)
+..+|...|..+.+.- .-.......+..+|...+++++|..+|+.+.+.. ..-+...|.+.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4566777776644432 2233445556677777777777777777776542 11245566665544322 122222
Q ss_pred -HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 417 -HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
-+.+.+... -.+.+|.++.++|.-+++.+.|++.|++.++... -...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 233333332 2667777777777777788888877777776421 1566777777777777777777777777765422
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
+ +...|-.+...|.+.++++.|+-.|+++.+.+|.+.+....++..+-+.|+.++|+++++++...+ +.|+..--..+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 2 333455566677777788888888888877777777777777777777788888888887777654 23444444556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 576 NFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
..+...+++++|++.++++++. ++.+...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6677777778888888777764 2334455666667777777777777777777664
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2.1e-12 Score=126.83 Aligned_cols=285 Identities=15% Similarity=0.090 Sum_probs=213.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCcHhHHHHHHHHHHhcCCHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL--MPNNVVYNSTIHWLFAEGDVEGALFV 381 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~ 381 (658)
+..+|...|..+..+- .-+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+-+. -+--.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 3567778887755442 33445666778888888888888888888876521 12556676665433221 111122
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006154 382 LSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
-+.+.+. .+-.+.+|.++.++|.-.++.+.|++.|++.++.++. ...+|+.+.+-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 2233332 2336778999999999899999999999998887544 6788888888888888999999999888764
Q ss_pred CCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 462 PDIITYG---TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 462 p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
|...|+ .+...|.+.++++.|+-.|+++.+.++. +.+....+...+-+.|+.++|+.+++++....+.++..--.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 444444 4667788999999999999999887554 66677777888888999999999999999999888877777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
.+..+...+++++|+..++++++. ++.+...|-.++..|.+.|+.+.|+.-|.-+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 788888899999999999999985 3334667788889999999999999999888875433
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.9e-11 Score=107.49 Aligned_cols=287 Identities=11% Similarity=0.081 Sum_probs=191.5
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC------HHHHHHHHHHHHhcCC
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN------VNTFNLVIYALCKECK 231 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~ 231 (658)
-..+.++|.++|-+|.+.+.. +..+..+|.+.|.+.|..+.|+.+.+.+..+ || ......|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 346788999999999885433 5666778888888999999999999998874 44 2234456667788888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC----hhhHHHHHHHHHhcCChHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN----SVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 307 (658)
++.|.++|..+.+.+. --..+...|+..|-...++++|++.-+++ ...+-.+. ...|.-+...+....+++.
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L---~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERL---VKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999988877532 24557778888888889999988888874 33222222 2345556666667778888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 308 AEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 199 A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 199 ARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888775 4455666667778888888888888888888774433345667777788888888888888887776
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 006154 388 KHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS---NNLAAAKQLLSSMIV 457 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 457 (658)
....++ .-..+........-.+.|..++.+-+.. .|+...+..++...... |...+...+++.|..
T Consensus 278 ~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 278 TNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 533333 2233333333333445555544444443 35666666666654432 234444445555544
No 55
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=7.8e-09 Score=101.37 Aligned_cols=494 Identities=14% Similarity=0.104 Sum_probs=287.0
Q ss_pred hHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHH
Q 006154 74 PKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALV 153 (658)
Q Consensus 74 ~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 153 (658)
|+.++..++.-.+ .++++-..-+..|...+++++|.+.+..++.+. .|.+- ..+.+...|..+-
T Consensus 154 Pets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d------~f~sk-----~gkSn~qlw~elc 217 (835)
T KOG2047|consen 154 PETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQD------EFVSK-----KGKSNHQLWLELC 217 (835)
T ss_pred hHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCch------hhhhh-----cccchhhHHHHHH
Confidence 5556666665442 345556677888999999999999998887641 11100 1223334444444
Q ss_pred HHHHhcCChh---HHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-
Q 006154 154 RACTQIGATE---GAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE- 229 (658)
Q Consensus 154 ~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~- 229 (658)
...+++-+.- ....+++.+...-...--..|.+|...|.+.|.++.|..+|++.+.. ...+.-|..+.++|.+-
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 4444432222 22233333333211112356788888888888888888888877754 23444444444444321
Q ss_pred ---------------C------CHHHHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 230 ---------------C------KLEEALSLYYRMLKSGI-----------WPNVVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 230 ---------------g------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
| +++-...-|+.+...+. +-++..|..-.. +..|+..+-...+.++
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHH
Confidence 1 12222333444333210 112333433332 2346666667777664
Q ss_pred cccccCCcCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 278 GVMSGDSVLP--NSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN---VRTYATLIDGYARGGSSEEALRLCDEMVK 352 (658)
Q Consensus 278 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (658)
..-......+ -...|..+.+.|-..|+++.|..+|++..+...+.- ..+|......-.+..+++.|+++++....
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 1111111111 134588888999999999999999999987643322 34566666666677888899988877654
Q ss_pred CCCC----------C-------cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 353 RGLM----------P-------NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 353 ~g~~----------p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..-. | +...|...++.--..|-++....+|+++++..+. ++.........+-...-++++.+
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHH
Confidence 3111 1 2234555555555677888888888888887654 33333333334445566788888
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHH
Q 006154 416 LHNQVLEEHMVGDA-YSYNILINYLCK---SNNLAAAKQLLSSMIVRGLIPDIITYGTLI--DGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~ 489 (658)
.+++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++ |++|...-+--|+ ..=-+.|....|+.++++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88776665444443 345655554443 3468889999999888 6665433222221 112245778888888888
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC
Q 006154 490 MKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-D-AITYNTLINGYFINGKIAEAFAMFSEMRNV-GI 564 (658)
Q Consensus 490 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 564 (658)
.... .++. ...|+..|.--...=.+.....+++++.+.-+. + ....-.....-++.|..+.|..++.-..+. +.
T Consensus 612 at~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 612 ATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 7654 3322 235666666555555556667788888777554 2 233344556667888999998888777653 22
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 565 AVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..+...|.+.-..-.+.|+-+...++
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 33455677777777788884443333
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.3e-10 Score=103.78 Aligned_cols=168 Identities=10% Similarity=0.102 Sum_probs=79.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH-HHHHHHHcCC
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT-LINGYFINGK 548 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 548 (658)
+.+.+.-..++++++-.++.+... +..|......+.++.+..|.+.+|+++|-.+......+..+|.. |.++|...++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 344444445555555555555544 22233333345555666666666666665555444444444433 3455556666
Q ss_pred HHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGY-NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++.|+.++-++.. +.+..+. ..+.+-|.+.+.+=-|-+.|+.+.. ..|++..|. |+......+|.
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKRGACaG~f~ 509 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKRGACAGLFR 509 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------CccchHHHHHH
Confidence 6665555433322 1222222 2333445555555555555555544 345555553 33333444555
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhcCC
Q 006154 628 DMVLSGVSP-DNQTYNAIISPLLGEK 652 (658)
Q Consensus 628 ~m~~~g~~p-~~~~~~~l~~~~~~~g 652 (658)
.+....-.| ...+...++..+...+
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 544432222 2234444554444443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=2.6e-08 Score=97.79 Aligned_cols=569 Identities=11% Similarity=0.099 Sum_probs=320.0
Q ss_pred HHHHHhcCCChHHHHHHH--HHhcccCCCCCCHHhHHHHHHHH----HcCCCchHH-HHHHHHHHhcCCC-ChHHHHHHH
Q 006154 64 NRVVSEFRKSPKLALEFY--TWVGENNRFSHSLESSCAIVHLL----VNWRRFDDA-LLLMGNLMSANSV-SPLEFLEGL 135 (658)
Q Consensus 64 ~~vl~~~~~~~~~al~~f--~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~a-~~~~~~~~~~~~~-~~~~~~~~l 135 (658)
.+.++.+..+.+.=..+. +|..-. +..|+..+|..+-+.+ ....+.... ...++-+++++.+ .....|.+-
T Consensus 50 ERal~~lp~sykiW~~YL~~R~~~vk-~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrA 128 (835)
T KOG2047|consen 50 ERALKELPGSYKIWYDYLKARRAQVK-HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRA 128 (835)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 345566666665555555 565543 3355555665544333 323333333 3445555555443 345677777
Q ss_pred HhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC----
Q 006154 136 LDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG---- 211 (658)
Q Consensus 136 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g---- 211 (658)
+...+... ...+|...+......|-++-+..++++.++. ++..-+..+..+++.+++++|.+.+...+...
T Consensus 129 LraLpvtq-H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 129 LRALPVTQ-HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred HHhCchHh-hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhh
Confidence 77664333 3477888888888889999999999998875 55667888888999999999998888877431
Q ss_pred --CCcCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCC
Q 006154 212 --YVENVNTFNLVIYALCKECKLE---EALSLYYRMLKSGIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 212 --~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
.+.+...|..+-....+.-+.- ....+++.+... -+|.. .|.+|.+-|.+.|+++.|..++++. ...
T Consensus 204 k~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea---i~~- 277 (835)
T KOG2047|consen 204 KKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEA---IQT- 277 (835)
T ss_pred hcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHh-
Confidence 1344556766666665543322 233444444433 34543 6888999999999999999999984 221
Q ss_pred cCCChhhHHHHHHHHHhcCCh----------------------HHHHHHHHHHHHcC-----------CCCChhhHHHHH
Q 006154 285 VLPNSVTHNCIINGFCKLGRV----------------------EFAEEIRYAMIKAG-----------IDCNVRTYATLI 331 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~~~~~~-----------~~~~~~~~~~li 331 (658)
..+..-|..+.++|..-..- +-...-|+.+...+ -+.++..|..-
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR- 355 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR- 355 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh-
Confidence 12445566666666542211 11112222222211 01112222111
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCc------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 006154 332 DGYARGGSSEEALRLCDEMVKRGLMPN------NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTK 402 (658)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 402 (658)
.-+..|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++...-..+.- ..+|..-..
T Consensus 356 -V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 356 -VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred -hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 122345666667777776653 2222 23577777888888999999888888876533311 223333344
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC----------C-------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006154 403 GLCRNGCVKQAFKLHNQVLEEHMV----------G-------DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII 465 (658)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 465 (658)
.-.+..+++.|+++.+......-. | +...|...++..-..|-++....+++++++..+. ++.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPq 512 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQ 512 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHH
Confidence 444566778888877766532111 1 3345666666666777888888888888876543 222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCC-C-HhhHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL-VIYNSIINGLCK---DASLDAAKSLLQASQRIGLL-D-AITYNTL 539 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~-~-~~~~~~l 539 (658)
..-.....+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|..+|+++.+..|+ . ...|...
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlY 592 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLY 592 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2111122233455677778777776655333443 355555554443 33678888888888885554 2 2233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT---RFS 614 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~---~~~ 614 (658)
...--+.|-...|+.+++++... +.+. ...||+.|.--...=-+..-..+++++++. -|+...-...+. .=+
T Consensus 593 A~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 593 AKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhh
Confidence 33333457777778888776543 2222 334555554333332333445555555553 344443332222 234
Q ss_pred hCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCC
Q 006154 615 KNCSPEEVIELHDDMVLSGVSP--DNQTYNAIISPLLGEKS 653 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 653 (658)
+.|..+.|..++....+- +.| +...|.+.=.-=.+.|+
T Consensus 670 klGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 566666666666665543 233 22334444444444443
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=9.5e-09 Score=103.17 Aligned_cols=467 Identities=14% Similarity=0.067 Sum_probs=297.7
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH---HhcCCHhHH-------------------HH----HHHHHHhCC
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHL---VKLNEIGRF-------------------WK----LYKEMVSCG 211 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~a-------------------~~----~~~~~~~~g 211 (658)
..+..+++..-+......+...++.++..+...+ ...++.+++ .- .+.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666555555544433322 223333333 21 222233333
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hh
Q 006154 212 YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SV 290 (658)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~ 290 (658)
+.-|...|..+.-++...|+++.+.+.|++.....+. ....|..+...|...|.-..|..+++.. ......|+ ..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~---~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRES---LKKSEQPSDIS 394 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhh---cccccCCCcch
Confidence 4556778888888888899999999999998764332 5667888888899999999999999883 33222343 33
Q ss_pred hHHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHhcC-----------ChHHHHHHHHHHHHCC
Q 006154 291 THNCIINGFC-KLGRVEFAEEIRYAMIKA--GI--DCNVRTYATLIDGYARGG-----------SSEEALRLCDEMVKRG 354 (658)
Q Consensus 291 ~~~~li~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~g 354 (658)
.+...-..|. +.+.++++++.-.++... +. ......|..+.-+|...- ...++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333333 446777777777666652 11 223445555555554321 1346777788877765
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 355 LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNI 434 (658)
Q Consensus 355 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 434 (658)
.. |+.....+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+.-.. |......
T Consensus 475 ~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 PT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred CC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 33 333333344457778899999999999998877778888888888888899999999998877765221 1111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHH--HHHH----HHHhcCChHHHHHHHHHH----------------
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRG--LIPDIITYG--TLID----GYCKGGNIEGAVQVYENM---------------- 490 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~--~li~----~~~~~g~~~~A~~~~~~~---------------- 490 (658)
-++.-...++.++|......+...- ..+-..+.. .+.. .....++..+|.+....+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 2222233556666655544443210 000000000 0000 000011111121111111
Q ss_pred -HhCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 491 -KKVE--KKPN------LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 491 -~~~~--~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+.. ..|+ ...|......+.+.+..++|...+.++....+..+..|...+..+...|..++|.+.|.....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111 1122 234556677788899999999999999999888899999999999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARE--LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.+ +.++.+..++..++.+.|+...|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|....+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 53 3346778899999999999888888 999999865 347889999999999999999999999998874
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=3.5e-10 Score=104.83 Aligned_cols=292 Identities=13% Similarity=0.079 Sum_probs=235.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..|++.+|.++..+-.+.+-. ....|..-..+.-..|+.+.+-.++.+..+.-..++...+-+........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 479999999999998877644 3445666677778899999999999999886556667777788888999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHH
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDII-------TYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
-++++.+.++. ++........+|.+.|++.....++..+.+.|.-.+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998876 77888899999999999999999999999998765543 46666665555566666666777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 568 (658)
..... .+.++..-.+++.-+...|+.++|.++.++..+...+.. -...-.+.+-++.+.-++..++-.+. .+.++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 76554 455777888899999999999999999999998876533 22223455677888777777777664 24456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 569 VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
..+.+|...|.+.+.+.+|.+.|+..... .|+..+|+.+..++.+.|+..+|.+..++.+..-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999988874 8999999999999999999999999998877543333
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.8e-09 Score=98.08 Aligned_cols=437 Identities=14% Similarity=0.116 Sum_probs=233.6
Q ss_pred HHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHh
Q 006154 104 LVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHA 183 (658)
Q Consensus 104 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 183 (658)
+...+++..|+.+++.-... +......+-.-+..++.+.|++++|...+..+.+.. .++...
T Consensus 32 fls~rDytGAislLefk~~~-----------------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el 93 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----------------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAEL 93 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----------------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCccc
Confidence 34466777777777654421 111111222335667888999999999998887743 456666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
+-.|...+.-.|.+.+|..+-.+..+ +...-..++..--+.|+-++-..+-+.+.+ ....-.+|.+....
T Consensus 94 ~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 94 GVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYM 163 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHH
Confidence 76777777777888888776655322 233333444444455665555555444432 11222344444444
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCh
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNC-IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR--GGSS 340 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~ 340 (658)
.-.+++|++++.+ .... .|+-...|. +.-+|.+..-++-+.++++-..+. ++.++..-|.......+ .|+.
T Consensus 164 R~HYQeAIdvYkr---vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ 237 (557)
T KOG3785|consen 164 RMHYQEAIDVYKR---VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT 237 (557)
T ss_pred HHHHHHHHHHHHH---HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch
Confidence 5566777777776 3322 122222332 334455666666666666665544 12233333333222222 1211
Q ss_pred ---------------------------------HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 341 ---------------------------------EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 341 ---------------------------------~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
+.|++++--+.+. -+..-..++-.|.+++++.+|..+.+++.-
T Consensus 238 ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P 313 (557)
T KOG3785|consen 238 AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP 313 (557)
T ss_pred hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC
Confidence 2222222222111 111222344456777888888777665531
Q ss_pred CCCCCChhhHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006154 388 KHICPDHFTYSILTKGLCRNG-------CVKQAFKLHNQVLEEHMVGDA-YSYNILINYLCKSNNLAAAKQLLSSMIVRG 459 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (658)
..|-......+. +...| ..+-|.+.|+.+-+.+..-|. .--..+...+.-..++++.+-.++.+..--
T Consensus 314 --ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF 389 (557)
T KOG3785|consen 314 --TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF 389 (557)
T ss_pred --CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222222221 22222 244555566555555443332 233455566666667777777777766543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHH
Q 006154 460 LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYN-SIINGLCKDASLDAAKSLLQASQRIGLL-DAITYN 537 (658)
Q Consensus 460 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ 537 (658)
...|...+ .+.++.+..|++.+|+++|-.+....++ |..+|. .+.++|.+.++++.|+.++-++.. +. .-....
T Consensus 390 ~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLq 465 (557)
T KOG3785|consen 390 TNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQ 465 (557)
T ss_pred cCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHH
Confidence 33334333 3567777788888888888777655444 444444 455667777888777766543221 11 233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+..-|.+.+.+--|-+.|+.+... .|++..| .|+-.....+|+++...
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANH 514 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcC
Confidence 5556777778877777778777764 4666655 34444555666666644
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=1e-08 Score=100.92 Aligned_cols=466 Identities=13% Similarity=0.100 Sum_probs=305.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALC 227 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 227 (658)
.|...+.+| ..+++...+++.+.+.+. .+--..+.....-.+...|+-++|....+.-++.+ .-+.++|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344444444 668888888888888873 33345555555556778899999999988888755 346678998888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
...++++|++.|......+.. |...|.-+.-.-.+.|+++.....-.+ ..+. .+.....|..++.++.-.|+...
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~---LLql-~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQ---LLQL-RPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHh-hhhhHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887433 555666665555667777776666655 2322 22356788888999999999999
Q ss_pred HHHHHHHHHHcC-CCCChhhHHHHH------HHHHhcCChHHHHHHHHHHHHCCCCCcHhHH-HHHHHHHHhcCCHHHHH
Q 006154 308 AEEIRYAMIKAG-IDCNVRTYATLI------DGYARGGSSEEALRLCDEMVKRGLMPNNVVY-NSTIHWLFAEGDVEGAL 379 (658)
Q Consensus 308 A~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~ 379 (658)
|..++++..+.. ..|+...|.... ....+.|..++|++.+..-... ..|...+ ..-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 999999988764 246666654433 3445678888888877665443 1233333 34456788899999999
Q ss_pred HHHHHHHhCCCCCChhhHHHH-HHHHHhcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 380 FVLSDMIDKHICPDHFTYSIL-TKGLCRNGCVKQAF-KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIV 457 (658)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (658)
.++..++.. .||..-|... ..++.+-.+.-++. .+|....+.-+... ..-..=++......-.+..-+++..+.+
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 999999986 4555555544 44443333334444 56666555422111 1111111122222333445567778888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMK----KVE----------KKPNLVI--YNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~ 521 (658)
.|+++-.. .+.+.|-.....+-..++.-.+. ..| -+|.... +-.++..+-..|+++.|...
T Consensus 317 Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88765433 33333322222221111111111 111 1444443 44567788899999999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII- 600 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~- 600 (658)
++.+....|.-...|..-.+.+...|++++|..++++..+.+ .||...-.--+.-..+.++.++|.++.....+.|..
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 999999988888888888899999999999999999999876 455554445566677899999999999998887641
Q ss_pred -CC----HHHHHHH--HHHHHhCCChHHHHHHHHHHH
Q 006154 601 -PD----YVTYTTL--VTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 601 -p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 630 (658)
-+ .-.|-.+ ..+|.+.|++.+|.+=|....
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 01 1123333 345777877777766554443
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=1e-09 Score=111.28 Aligned_cols=518 Identities=12% Similarity=0.069 Sum_probs=267.7
Q ss_pred cCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhcc-------CCCCCHHHHHHHHHHHHhc
Q 006154 87 NNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYE-------ICKATPAVFDALVRACTQI 159 (658)
Q Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~ 159 (658)
..|..|+..+|..++.-|+..|+.+.|- +|..|.-++-.....+|.+++.... ...|.+.+|..|..+|...
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhc
Confidence 4577888899999999999999999888 7776665422223334444433210 1123344455555555555
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-CGYVENVNTFNLVIYALCKECKLEEALSL 238 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 238 (658)
|++.. ++..++ ....+...+...|.......++..+.- .+.-||.. ..+....-.|-++.++++
T Consensus 97 GDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 97 GDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred cchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHH
Confidence 54433 111111 111222233333333333333333221 11222322 122233344556666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 239 YYRMLKSGIWPNVVCFNMIINEACQ-VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
+..+...... . .....++-... ...+++-...... ..+ .|++.+|..++.+-...|+.+.|..++.+|.+
T Consensus 162 l~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cks---l~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 162 LAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKS---LVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHH---hhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6555432111 1 11112322222 2334444444333 222 58999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHH-----------HHHHHHH
Q 006154 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGAL-----------FVLSDMI 386 (658)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~ 386 (658)
.|++.+..-|-.|+-+ .++..-+..++.-|...|+.|+..|+...+-.+.++|....+. .++..|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAAC 309 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHh
Confidence 9998888877777655 7888888999999999999999999988777666654422211 1111111
Q ss_pred hC-------------------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCChhhHHHHHHH
Q 006154 387 DK-------------------------HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM---VGDAYSYNILINY 438 (658)
Q Consensus 387 ~~-------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~ 438 (658)
.. |.......|...+. ....|.-++..++...+..--. ..++..|..++.-
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 10 11111111111111 1123444444444433322100 0122223333332
Q ss_pred HHhcC----------------------CHHHHHHHHHHHHHCCCCCCH----------------------------HHHH
Q 006154 439 LCKSN----------------------NLAAAKQLLSSMIVRGLIPDI----------------------------ITYG 468 (658)
Q Consensus 439 ~~~~~----------------------~~~~A~~~~~~~~~~~~~p~~----------------------------~~~~ 468 (658)
|.+.- ...+..++.... .|+. ..-+
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 22211 111111111111 1111 0112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFI 545 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 545 (658)
.++-.++..-+..++...-++.... . -...|..+++-++...+.+.|..+.++....... +...+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 2222333333333333222222221 1 1145667777777777777777777776655443 66677777778888
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGI-AVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+....+..+++++.+.-. .|+ ..++-.+.+.....|+.+.-.++++-+...|+..+ ..++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888877766211 222 33445566666777777777777777776665432 33344455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 006154 624 ELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 624 ~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
+..+...++ .+|....-..+.+
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcr 638 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCR 638 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHH
Confidence 666655554 4444444333333
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=3.3e-10 Score=114.74 Aligned_cols=481 Identities=12% Similarity=0.016 Sum_probs=262.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
+..|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 56677799999999999999999998 8888888777788888999999888888877665 57888999
Q ss_pred HHHHHHHhcCCHHH---HHHHHHHHHh----CCCC-------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 006154 221 LVIYALCKECKLEE---ALSLYYRMLK----SGIW-------------P-NVVCFNMIINEACQVGDLEFALKLFRKMGV 279 (658)
Q Consensus 221 ~l~~~~~~~g~~~~---A~~~~~~m~~----~~~~-------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 279 (658)
.|..+|.+.|++.. +.+.++.+.. .|+- | ....-...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 3332222221 1211 0 001112233334445666777777666221
Q ss_pred cccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH
Q 006154 280 MSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN 359 (658)
Q Consensus 280 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 359 (658)
.... .|..+ +++-+..... -.+++.......--.|+..+|..++..-..+|+.+-|..++.+|.+.|+..+.
T Consensus 168 sa~~--~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 168 SAWN--APFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred cccc--chHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 1111 11111 2333322222 22333333322211578888888888888889999999999999998888888
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 006154 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL 439 (658)
Q Consensus 360 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 439 (658)
+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.+. .+.........+..+.++.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHHhccc
Confidence 777776655 777888888888888888999988888877777775553222111 1110001122222222221
Q ss_pred HhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHh
Q 006154 440 CKSNNLAA-----AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK--KP-NLVIYNSIINGLCK 511 (658)
Q Consensus 440 ~~~~~~~~-----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~ 511 (658)
....+++. ....+.+..-.|+......|...+.. ...|.-++.+++-..+..-.. .+ ++..+..++.-|..
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 11111111 11111222222433333444443332 236777777777777654222 11 23345555555544
Q ss_pred cCCHHHHHHHHH--HHHHcCCCCHhhHHHHHHHHHH--------------------------------------------
Q 006154 512 DASLDAAKSLLQ--ASQRIGLLDAITYNTLINGYFI-------------------------------------------- 545 (658)
Q Consensus 512 ~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------- 545 (658)
.-+..-...++. +....... ......+.....+
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~-se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLN-SEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhc-hhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 333222222222 22222111 1111111111111
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 546 -NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH--GIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 546 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
.-+..+++..-++.... .- ...|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+
T Consensus 471 se~n~lK~l~~~ekye~~-lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 00111111110111000 00 123566777777777777777777776532 2344555677777888888888888
Q ss_pred HHHHHHHHHCC-CCCC-HHHHHHHHHHhhcCCC
Q 006154 623 IELHDDMVLSG-VSPD-NQTYNAIISPLLGEKS 653 (658)
Q Consensus 623 ~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~g~ 653 (658)
..++++|.+.- ..|+ ..++-.++....-.|.
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agq 580 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQ 580 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccC
Confidence 88888887741 1222 2344445555444443
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6e-08 Score=90.28 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=149.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006154 321 DCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSI 399 (658)
Q Consensus 321 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 399 (658)
+.|+.....+...+...|+.++|...|++.... .|+..+ .......+...|+.+....+...+....- -+...|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhh
Confidence 344555555555555555555555555555443 122111 11111223344555555555444443210 11122222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006154 400 LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN 479 (658)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 479 (658)
-+..+...+++..|+.+-++.++.+.. +...|-.-...+...++.++|.-.|+..+... +-+...|..|+..|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 223333455566666666665554433 34444444455566666666666666655431 1245666666666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 480 IEGAVQVYENMKKVEKKPNLVIYNSII-NGLCK-DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
+.+|...-+...+. ++.+..+.+.+. ..+.. ...-++|.+++++.....|.-..+.+.+...+...|..+.++.+++
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 66666555554443 233444444432 22222 2234667777777777777766777777777777888888888887
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+. ..||....+.|.+.+...+.+++|.+.|..+...
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7776 3577777778888888888888888887777764
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=8.3e-09 Score=103.61 Aligned_cols=414 Identities=12% Similarity=0.040 Sum_probs=254.5
Q ss_pred CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 006154 176 GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFN 255 (658)
Q Consensus 176 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 255 (658)
.+.-++..|..+.-++.+.|+++.+.+.|++....- .-....|..+...+...|.-..|+.+++.-......|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345567777777777888888888888888777532 2344567777777777777777888877765543334433333
Q ss_pred HHHH-HHH-hcCCHHHHHHHHHHhcccc-cCCcCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCC
Q 006154 256 MIIN-EAC-QVGDLEFALKLFRKMGVMS-GDSVLPNSVTHNCIINGFCKL-----------GRVEFAEEIRYAMIKAGID 321 (658)
Q Consensus 256 ~li~-~~~-~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 321 (658)
.++. .|. +.|.+++++.+-.++.... ...-......|..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3333 222 2356666666555531100 000011233344444333321 12345667777776664 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT 401 (658)
Q Consensus 322 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 401 (658)
.|....-.+.--|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+...+.- .-|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 33333333444566778888888888888887666678888888888888888888888877766431 10111111111
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 402 KGLCRNGCVKQAFKLHNQVLEE----------------------------HMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
..-...++.+++......++.- .+.-.+.++..+.......+....-...
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1112234444444433332211 0010112222222211111100000000
Q ss_pred HHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 454 SMIVRGLI--PD------IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 454 ~~~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
+...... |+ ...|......+.+.+..++|...+.+..+. .+.....|......+...|...+|...|...
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1111111 22 123445566778889999999888888775 3446677777778888899999999999999
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFA--MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...+|.++.+..++..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|+...+.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999998888877 999999976 557889999999999999999999999988864
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=8.2e-11 Score=105.44 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=201.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY-GT 469 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~ 469 (658)
..|-..-+.+.++|.+.|...+|.+.++..++.. |-+.||..|-.+|.+..++..|+.++.+-.+. .|..+|| ..
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 3355555788899999999999999999988874 45668888999999999999999999998875 3455554 45
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
+...+...++.++|.++|+...+.. +.+......+...|.-.++++-|...+.++...|..++..|+.+.-+|...+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 6677888899999999999998863 447777777888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
+-++.-|++....--.|+ ...|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999987544454 4567788888889999999999999998764 3367788888888889999999999999
Q ss_pred HHHHCCCCCCH
Q 006154 628 DMVLSGVSPDN 638 (658)
Q Consensus 628 ~m~~~g~~p~~ 638 (658)
.... +.|+.
T Consensus 454 ~A~s--~~P~m 462 (478)
T KOG1129|consen 454 AAKS--VMPDM 462 (478)
T ss_pred Hhhh--hCccc
Confidence 8876 45554
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=6.4e-10 Score=116.76 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=140.5
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCcc
Q 006154 109 RFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQI---------GATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~~ 179 (658)
.+++|..++++.++ ..|.++.+|..+..+|... +++++|...+++..+.++.
T Consensus 276 ~~~~A~~~~~~Al~------------------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~- 336 (553)
T PRK12370 276 SLQQALKLLTQCVN------------------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN- 336 (553)
T ss_pred HHHHHHHHHHHHHh------------------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-
Confidence 35667777777776 4666777777777666532 3467888888888877543
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIIN 259 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 259 (658)
+..++..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 66777777777788888888888888888764 344666777777788888888888888888776332 2223333444
Q ss_pred HHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 006154 260 EACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGS 339 (658)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 339 (658)
.+...|++++|...+++ ......+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|...|
T Consensus 415 ~~~~~g~~eeA~~~~~~---~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDE---LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHhccCHHHHHHHHHH---HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH-
Confidence 45667778888887777 3322111134445666677777788888888777765442 223334444555556666
Q ss_pred hHHHHHHHHHHHH
Q 006154 340 SEEALRLCDEMVK 352 (658)
Q Consensus 340 ~~~A~~~~~~~~~ 352 (658)
++|...++.+.+
T Consensus 490 -~~a~~~l~~ll~ 501 (553)
T PRK12370 490 -ERALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHHH
Confidence 366665655544
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=4.1e-08 Score=99.51 Aligned_cols=295 Identities=16% Similarity=0.139 Sum_probs=205.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc-
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE- 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~- 229 (658)
-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|...|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3456678889999999999886554 33345566677889999999999999999999986 34455555555555222
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCC
Q 006154 230 ----CKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLE-FALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGR 304 (658)
Q Consensus 230 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 304 (658)
...+...++|+++...- |...+...+.-.+..-..+. .+...+.. +...|+++ +|+.+-..|....+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~---~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRP---QLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHH---HHhcCCch---HHHHHHHHHcChhH
Confidence 35677888899887652 44443333332222222333 33444444 55666653 56666666666666
Q ss_pred hHHHHHHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc-HhHHHHHHH
Q 006154 305 VEFAEEIRYAMIKA----G----------IDCNV--RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN-NVVYNSTIH 367 (658)
Q Consensus 305 ~~~A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~ 367 (658)
.+-..+++...... + -+|+. .++..+...|...|++++|++++++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 13333 34566788888999999999999999887 455 567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------h--HHHHHHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAY------S--YNILINYL 439 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~ 439 (658)
.+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+.+..|-.. . ......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887555 77777777888889999999999999988776433221 1 23456778
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 006154 440 CKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~ 458 (658)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8899998888877766553
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1e-10 Score=104.87 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=161.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006154 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN 407 (658)
Q Consensus 328 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (658)
+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-.+|.+..+.+.|+.++.+-++. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55777788888888888888777766 456667777778888888888888888777664 333444444566667777
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006154 408 GCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVY 487 (658)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 487 (658)
++.++|.++++...+.... ++.....+...|.-.++++.|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7888888888887776543 5555555666677777777788777777777765 6666777666666777777777777
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 488 ENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 488 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+....--.|+ ..+|-.+.......|++..|.+.|+-....+..+..+++.|.-.-.+.|+.++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77665433333 235556666666677777777777777777777777777777777777777777777777665
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=7.4e-10 Score=103.57 Aligned_cols=158 Identities=12% Similarity=0.038 Sum_probs=69.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHhhHHHHHHHHHHcC
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL--LDAITYNTLINGYFING 547 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 547 (658)
+...+...|++++|.+.+++..+... .+...+..+...+...|++++|...++.+..... .....+..+...+...|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 33333344444444444444333221 1223333333444444444444444444433211 13334444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+
T Consensus 150 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 150 DFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred CHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555554432 122334445555555555555555555555443 22233444444444555555555555555
Q ss_pred HHH
Q 006154 628 DMV 630 (658)
Q Consensus 628 ~m~ 630 (658)
.+.
T Consensus 228 ~~~ 230 (234)
T TIGR02521 228 QLQ 230 (234)
T ss_pred HHH
Confidence 444
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=6.9e-10 Score=116.52 Aligned_cols=217 Identities=13% Similarity=-0.011 Sum_probs=124.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
+++++|...++++.+.+.. +...+..+...+...|++++|...++++.+.++. +...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456666666666665332 4555556666666666777777777776666543 4555666666666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD 532 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 532 (658)
++..+.... +...+..++..+...|++++|+..++++.+...+.++..+..+...+...|+.++|...+.++....+.+
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 776665322 1222222333344566777777777776654322234445556666667777777777777766555555
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
....+.+...|+..|+ +|...++.+.+. ...+....+ +...+.-.|+.+.+... +++.+.
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6666666666666663 666656555441 112222222 33344555665555554 666654
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1e-09 Score=102.64 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=169.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
.....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34567788888999999999999999999887543 567888889999999999999999999988643 3566777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
..+...|++++|...+++..+... ......+..+...+...|++++|...+++.....+.+...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 889999999999999999987532 2234567778888899999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999886 345667777888889999999999998887765
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.2e-07 Score=96.20 Aligned_cols=303 Identities=16% Similarity=0.120 Sum_probs=214.6
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
+...-...++...|++++|...++.... ...............+.+.|+.++|..++..+++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~------------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEK------------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhh------------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445556788999999999999987654 3344557778889999999999999999999999
Q ss_pred CCCccCHHhHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCC
Q 006154 175 KGHSVSIHAWNNFLSHLVKL-----NEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL-EEALSLYYRMLKSGIW 248 (658)
Q Consensus 175 ~g~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~ 248 (658)
.++. +..-|..+..+..-. .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|++
T Consensus 67 rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP 143 (517)
T PF12569_consen 67 RNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP 143 (517)
T ss_pred HCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 8643 555555666655222 25678889999887652 4433333333223322233 3456667777887764
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhcc-cccC----------CcCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGV-MSGD----------SVLPNS--VTHNCIINGFCKLGRVEFAEEIRYAM 315 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~ 315 (658)
. +++.+-..|......+-..+++..+.. +... .-+|.. .++..+...|...|++++|.+.+++.
T Consensus 144 -s--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 144 -S--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred -h--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 455566666655555555555555311 1111 123444 34566678889999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 316 IKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 316 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
.++. |..+..|..-.+.|-+.|++++|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|...
T Consensus 221 I~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 221 IEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred HhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 9884 444788999999999999999999999999987544 66677778888999999999999999888776533322
Q ss_pred h--------HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 396 T--------YSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 396 ~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
. ......+|.+.|++..|++.|..+.+.
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 244567888999999999888877664
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.9e-07 Score=91.23 Aligned_cols=133 Identities=11% Similarity=0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 515 LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFS--------EMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+..+..++....+..+. ...+...++......|+++.|.+++. .+.+.+..|-. ...+...+.+.++.+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCc
Confidence 44455555554444444 34444455555555555555555555 33333333322 223334444444444
Q ss_pred HHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 586 QARELMKVMILH--GIIPD----YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 586 ~A~~~~~~~~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
.|..++.+.+.. .-.+. ..++.-+...-.+.|+-++|...++++.+. -++|..+...++.+|+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 444444443321 00011 112222222233445555555555555553 23444555555555544
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.7e-07 Score=89.26 Aligned_cols=451 Identities=14% Similarity=0.083 Sum_probs=255.4
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.....+=++.....+++++|.+...+++. ..|.++.++..-+.+..+.+++++|+.+.+.-.
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~------------------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~ 73 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILS------------------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG 73 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHh------------------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc
Confidence 34566667778888899999988888876 567788888888889999999999986555432
Q ss_pred hCCCccCHHhHHH--HHHHH--HhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 174 VKGHSVSIHAWNN--FLSHL--VKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 174 ~~g~~~~~~~~~~--ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
.. .+.+. +=.+| .+.+..++|...++-.. +.+..+...-...+.+.|++++|.++|+.+.+++.+
T Consensus 74 ~~------~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d- 142 (652)
T KOG2376|consen 74 AL------LVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD- 142 (652)
T ss_pred hh------hhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-
Confidence 11 11111 22333 46788999988888222 123445666667788899999999999999877543
Q ss_pred ChhhHHHHHHHH-HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCC-----
Q 006154 250 NVVCFNMIINEA-CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI---INGFCKLGRVEFAEEIRYAMIKAGI----- 320 (658)
Q Consensus 250 ~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~----- 320 (658)
+ +...+.+- ...+-.-.+. +.+. .. ..| ..+|..+ ...+...|++.+|+++++...+.+.
T Consensus 143 d---~d~~~r~nl~a~~a~l~~~-~~q~---v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 143 D---QDEERRANLLAVAAALQVQ-LLQS---VP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred h---HHHHHHHHHHHHHHhhhHH-HHHh---cc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 2 21122111 1111111111 2332 11 112 2233333 3445678999999999988833210
Q ss_pred --C--CCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH----HHHHHHHHHhcCCHH-HHHHHHHHHH
Q 006154 321 --D--CNV-----RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVV----YNSTIHWLFAEGDVE-GALFVLSDMI 386 (658)
Q Consensus 321 --~--~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~----~~~ll~~~~~~g~~~-~a~~~~~~~~ 386 (658)
. -+. ..-..|...+-..|+-++|..++....+.... |... -|.++..-....-++ .++..++...
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 0 011 11223445666789999999999988877543 4322 233332211111111 1122222211
Q ss_pred hCCC----------CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCCHHHHHHHHH
Q 006154 387 DKHI----------CPDHFTY-SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC--KSNNLAAAKQLLS 453 (658)
Q Consensus 387 ~~~~----------~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~ 453 (658)
.... .-..... +.++..+ .+..+.+.++....... .|. ..+.+++.... +...+.+|.+++.
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1000 0001111 1222222 22333343333332221 222 23333433322 2234677777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE--------NMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
..-+....-.....-.++......|+++.|++++. .+.+.+.. +.+...+...+.+.++.+.|..++..+
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 77665333334555666777788899999999988 44444443 445556677777777777777777665
Q ss_pred HHcC---CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 526 QRIG---LL----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 526 ~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
..-- .. -...+..++..-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 4321 11 22334444455566789999999999998863 57788888888888876 677777765543
No 76
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.2e-06 Score=90.55 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCC----------
Q 006154 57 SLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSV---------- 126 (658)
Q Consensus 57 ~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~---------- 126 (658)
..+|+.+..+-...+.+|+.+++|-.-+....+ ....+..+..++...+....+..++-.+++....
T Consensus 508 GyTPdymflLq~l~r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLL 584 (1666)
T KOG0985|consen 508 GYTPDYMFLLQQLKRSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLL 584 (1666)
T ss_pred CCCccHHHHHHHHHccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHH
Confidence 345555544333345678888888777664332 3334566666666666666666655555543221
Q ss_pred -----ChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-----HHHHHHHhcCC
Q 006154 127 -----SPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN-----NFLSHLVKLNE 196 (658)
Q Consensus 127 -----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-----~ll~~~~~~g~ 196 (658)
....+.+.++.. ...+..-+..+...|.++|-+.+|++.+..+.... ..+ ... --+..|...-.
T Consensus 585 E~NL~~aPqVADAILgN---~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK--R~v-Vhth~L~pEwLv~yFg~ls 658 (1666)
T KOG0985|consen 585 EMNLVHAPQVADAILGN---DMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVV-VHTHLLNPEWLVNYFGSLS 658 (1666)
T ss_pred HHHhccchHHHHHHHhc---cccccccHHHHHHHHHhcchHHHHHHhcccHHHHH--HHH-HHhccCCHHHHHHHHHhcC
Confidence 223333443331 12223337778889999999999998887765421 011 011 11223344456
Q ss_pred HhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCChhhHHHHHHHHHhcC
Q 006154 197 IGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKS-----------GIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 197 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~~~~~li~~~~~~g 265 (658)
++.+.+.++.|...++..|..+.-.+..-|+..=-.+..+++|+..... ++.-|....--.|.+.|+.|
T Consensus 659 ve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~ 738 (1666)
T KOG0985|consen 659 VEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTG 738 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhc
Confidence 7788888888888777777776666666666655556666666665432 23345555556777788888
Q ss_pred CHHHHHHHHHH
Q 006154 266 DLEFALKLFRK 276 (658)
Q Consensus 266 ~~~~A~~~~~~ 276 (658)
++.+.+++.++
T Consensus 739 QikEvERicre 749 (1666)
T KOG0985|consen 739 QIKEVERICRE 749 (1666)
T ss_pred cHHHHHHHHhc
Confidence 87777766654
No 77
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=6.1e-07 Score=90.79 Aligned_cols=519 Identities=13% Similarity=0.110 Sum_probs=255.7
Q ss_pred HHHHHHhccCCchhhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHH
Q 006154 36 FRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALL 115 (658)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 115 (658)
++.|..+-+..-|..+-++..+-..-.|..|..---++...| +..+.+...+ - ..+ ...+-....-|.+++|..
T Consensus 748 fksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-RAlR~a~q~~-~--e~e--akvAvLAieLgMlEeA~~ 821 (1416)
T KOG3617|consen 748 FKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-RALRRAQQNG-E--EDE--AKVAVLAIELGMLEEALI 821 (1416)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-HHHHHHHhCC-c--chh--hHHHHHHHHHhhHHHHHH
Confidence 344444445556777776666655555555543222222222 2233333321 1 222 223333445678888888
Q ss_pred HHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 006154 116 LMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN 195 (658)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 195 (658)
++.+..+ |..|=..|-..|.+++|.++-+.-.... -..+|......+-..+
T Consensus 822 lYr~ckR--------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 822 LYRQCKR--------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHH--------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhc
Confidence 8887654 5566677888899999998877543321 2356667777777788
Q ss_pred CHhHHHHHHHHHHhCC---------CC----------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 006154 196 EIGRFWKLYKEMVSCG---------YV----------ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNM 256 (658)
Q Consensus 196 ~~~~a~~~~~~~~~~g---------~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 256 (658)
+.+.|++.|++..... .+ .|...|.--...+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888877632110 01 1222333333333445666666666655442 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhHHHHHH
Q 006154 257 IINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGI----DCNVRTYATLID 332 (658)
Q Consensus 257 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~ 332 (658)
+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+.....- -.....-..|.+
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es---------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES---------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc---------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566666677777777776651 1455556677777777777777777766542100 000000011111
Q ss_pred HHHhcC--ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCChhhHHHH
Q 006154 333 GYARGG--SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSD--------MIDK--HICPDHFTYSIL 400 (658)
Q Consensus 333 ~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 400 (658)
.....| +.-.|-++|++.- . -+...+..|.+.|.+.+|+++--+ ++.. ....|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111 1222333333321 0 122334456677777777654321 1222 233455556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----------C----------------CCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEE----------H----------------MVGDA----YSYNILINYLCKSNNLAAAKQ 450 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~----------~----------------~~~~~----~~~~~l~~~~~~~~~~~~A~~ 450 (658)
...++...++++|..++-...+- + -.|+. .....+...|.++|.+..|.+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 66666666666666665443321 1 01111 123344445555555555554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH---------H----HHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 451 LLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV---------Y----ENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---------~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
-|.+.-.+ -..+.++.+.|+.++..-+ | +-+....++.++.+...++.-|.+...++.
T Consensus 1167 KfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~ 1237 (1416)
T KOG3617|consen 1167 KFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDH 1237 (1416)
T ss_pred HHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHH
Confidence 44433221 1123334444443321100 0 111122344455555555555554444443
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-----------cCCHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK-----------FGCYQQ 586 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~ 586 (658)
--.++.............|.. + .|-.++|-..+.++.... ....-++.|-.-..+ ..+..+
T Consensus 1238 LanFY~~cAqiEiee~q~ydK---a---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~ 1309 (1416)
T KOG3617|consen 1238 LANFYKSCAQIEIEELQTYDK---A---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAAD 1309 (1416)
T ss_pred HHHHHHHHHHhhHHHHhhhhH---H---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333333222221111111111 1 123344444444444322 112223322221111 125555
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 587 ARELMKVMILHGIIP----DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 587 A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++-...|.+..+-| -...|..+|..+....+++.|.+.+++|..+
T Consensus 1310 ~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1310 GIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 566666666654433 3557888999999999999999999999987
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.5e-07 Score=83.22 Aligned_cols=312 Identities=13% Similarity=0.055 Sum_probs=227.1
Q ss_pred CCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 319 GIDCNVRTYATLIDGYAR--GGSSEEALRLCDEMVKRG-LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 319 ~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
.++|+..+....+.++.. .++-..|...+-.+.... +.-|......+..++...|+..+|...|++....++. +..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~ 267 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVE 267 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhh
Confidence 345555555555555543 455555555554444333 3446777888999999999999999999998764221 222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
........+.+.|+.+....+...+....- .....|..-+..+...++++.|+.+-.+.++... .+...+-.-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHH
Confidence 233334445678888888888887766421 1333444445556677889999999988887532 24445555556778
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH-HHHHH-cCCHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI-NGYFI-NGKIAEAF 553 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~ 553 (658)
..+++++|.-.|+...... +-+...|..|+.+|...|++.+|...-+...+.-+.+..+...+. ..+.- ..--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 8999999999999988752 347889999999999999999999998888877666777776663 33332 23457899
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 554 AMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 554 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++++.+.. .|+ ....+.+...+...|..+.++.++++... ..||....+.|...+...+.+++|.+.|...+.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr- 499 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR- 499 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 999988874 566 44567788899999999999999999987 478999999999999999999999999999887
Q ss_pred CCCCCHHH
Q 006154 633 GVSPDNQT 640 (658)
Q Consensus 633 g~~p~~~~ 640 (658)
+.|....
T Consensus 500 -~dP~~~~ 506 (564)
T KOG1174|consen 500 -QDPKSKR 506 (564)
T ss_pred -cCccchH
Confidence 5666543
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=2e-11 Score=81.36 Aligned_cols=49 Identities=41% Similarity=0.679 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.6e-11 Score=80.79 Aligned_cols=50 Identities=40% Similarity=0.596 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=7.2e-09 Score=103.49 Aligned_cols=251 Identities=22% Similarity=0.180 Sum_probs=158.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEE-----HM-VGDAY-SYNILINYLCKSNNLAAAKQLLSSMIVR-----GLI-P 462 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-p 462 (658)
+...+...|...|++++|..+++..++. |. .|... ..+.+...|...+++++|..+|+++... |-. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555666666666666666555443 10 11221 2234566677777777777777776643 211 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C
Q 006154 463 -DIITYGTLIDGYCKGGNIEGAVQVYENMKKV-----EK-KPNL-VIYNSIINGLCKDASLDAAKSLLQASQRI-----G 529 (658)
Q Consensus 463 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 529 (658)
-..+++.|..+|.+.|++++|...++...+. +. .|.. ..++.+...++..+++++|..+++...+. +
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345566667778888887777777665431 11 1122 23556667777888888888888765432 2
Q ss_pred CC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 006154 530 LL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GI---AVNKVGYNILINFLCKFGCYQQARELMKVMIL--- 596 (658)
Q Consensus 530 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 596 (658)
.. -..+++.|...|...|++++|.+++++++.. +- .-....++.|...|.+.+++++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3567888999999999999999999888542 11 11244567888888888898888888887553
Q ss_pred -cCC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 006154 597 -HGI-IPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLS------GVSPDNQTYNAIIS 646 (658)
Q Consensus 597 -~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~l~~ 646 (658)
.|. .|+ ..+|..|...|.+.|++++|.++.+..... ...|+.........
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 232 222 457888888999999999999988877632 34455554444433
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=3.9e-09 Score=105.39 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----C--CC-
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKA---GID----CNVRTYATLIDGYARGGSSEEALRLCDEMVKRG----L--MP- 357 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~--~p- 357 (658)
++.++..++..+++++|..++....+. -+. .-..+++.|...|.+.|++++|.+++++..... - .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344444455555555555554443332 001 113455666666666666666666666554321 1 11
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDK----H--ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
....++.+...|.+.+...+|.++|.+.... | .+-...+|..|...|...|+++.|.++.+.+.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234455555566666666565555544321 1 12233456666667777777777777666655
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.1e-07 Score=88.14 Aligned_cols=415 Identities=12% Similarity=0.034 Sum_probs=242.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 006154 100 IVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 100 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 179 (658)
-..+....|+|+.|...+-+.+. -.|+|...|.--..+|...|++++|.+=-.+-.+..+ .
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~------------------l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~ 68 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIM------------------LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-D 68 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHc------------------cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-c
Confidence 34567778999999999988887 5677888899999999999999999888777777632 2
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhC---CCCCChhh
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEA---LSLYYRMLKS---GIWPNVVC 253 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~m~~~---~~~p~~~~ 253 (658)
-+..|+....++.-.|++++|+..|.+-++.. +.|...++-+..++.......+. -.++..+... .......+
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 56789999999999999999999999988864 34566667666666211000000 0011111100 00001112
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHhcc--cccCC-------cCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 254 FNMIINEACQV----------GDLEFALKLFRKMGV--MSGDS-------VLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 254 ~~~li~~~~~~----------g~~~~A~~~~~~~~~--~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|..++..+-+. .++..+...+..... ....+ ..|. .+.. .......+
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d 213 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIED 213 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccch
Confidence 22222222111 111111111111000 00000 0000 0000 00000000
Q ss_pred HHH-cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 315 MIK-AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD 393 (658)
Q Consensus 315 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (658)
+.+ .....-..-+..+.+...+..+++.|.+-++...... -+..-++....+|...|.+.++...-....+.|-. .
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 000 0000112234556777777888888888888877764 35555666777788888877777766666655432 1
Q ss_pred hhhHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 006154 394 HFTYSI-------LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-I 465 (658)
Q Consensus 394 ~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~ 465 (658)
..-|+. +..++.+.++++.++..|.+.+.....|+. ..+....+++........-.+ |.. .
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~ 359 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAE 359 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHH
Confidence 222222 333555567778888888776665444332 223334444444444333322 221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
-...-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|.+-.+...+..+.....|.-=+.++..
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 12222455677888888888888888775 33777888888888888888888888888888877777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 006154 546 NGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~ 563 (658)
..++++|.+.|++.++.+
T Consensus 439 mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778888888888888753
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=3.9e-08 Score=84.62 Aligned_cols=198 Identities=14% Similarity=-0.014 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
...|.-.|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++.++.... +....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4455667777888888888888887764 334667777788888888888888888887776433 45577778888888
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEA 343 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 343 (658)
.|++++|...|++. +......--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.+...+.|++-.|
T Consensus 116 qg~~~eA~q~F~~A--l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERA--LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHH--HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888885 3333233335677777777788888888888888888775 44556667777788888888888
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
...++.....+. ++..+.-..|..-...|+.+.+-+.=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888888777665 6777777777777777777777666555554
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=3.7e-08 Score=84.74 Aligned_cols=205 Identities=14% Similarity=0.040 Sum_probs=124.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|.-.|.+.|+...|..-+++.++... .+..++..+...|.+.|+.+.|.+.|++..+..+. +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 33455556666666666666666666532 24455666666666666666666666666665332 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
.|++++|...|+++.....- ...+|..++-+..+.|+.+.|...|++.++.. +-...+...+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 66666666666666654332 55666666666666777777777777666643 2234455566666666777777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 590 LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 590 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
+++.....+. ++..+....|..-...|+.+.+.++=..+.. .-|.+.-+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q 244 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQ 244 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 6666665543 5666666666666666666666666555554 344444443
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.18 E-value=1.7e-07 Score=96.88 Aligned_cols=477 Identities=12% Similarity=0.050 Sum_probs=279.3
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 208 (658)
...|..++.+..-.+.-..+|..|...|...-+...|.+.|+...+.+.. +..++......|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34455556655556666778888888888888888899999988887543 77788888888999999988888732222
Q ss_pred hCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC
Q 006154 209 SCGYVENV--NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL 286 (658)
Q Consensus 209 ~~g~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 286 (658)
+.. +--. ..|..+.-.+.+.++...|+.-|+...+..+. |...|..+..+|...|++..|.++|.++ .. +.
T Consensus 554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA---s~--Lr 626 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA---SL--LR 626 (1238)
T ss_pred hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh---Hh--cC
Confidence 211 1111 12333344566778888888888888876544 6778888999999999999999999773 22 23
Q ss_pred CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------
Q 006154 287 PN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAG------IDCNVRTYATLIDGYARGGSSEEALRLCDEMVK------- 352 (658)
Q Consensus 287 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 352 (658)
|+ ...--...-..|..|.+.+|...+....... ...-..++-.+...+...|-..+|.+.+++-.+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 2222223344567888888888887766431 111122333333333334444444444443322
Q ss_pred CCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---H---HHHHHHHHHHHcCCC
Q 006154 353 RGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV---K---QAFKLHNQVLEEHMV 426 (658)
Q Consensus 353 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~~~ 426 (658)
.....+...|-.+.+ |..+|-... .. .|+......+..-.-..+.. + -+.+.+-.-.+ ..
T Consensus 707 h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 211122223322222 222222222 00 12222222222211112211 1 01111111111 11
Q ss_pred CChhhHHHHHHHHHh-------c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 006154 427 GDAYSYNILINYLCK-------S-NNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN 498 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~-------~-~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 498 (658)
.+..+|..++..|.+ . .+...|...+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+..... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 123444444444433 1 22346777777766642 2366777776654 66678888887777666542 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH--H--HCCCCCChHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM--R--NVGIAVNKVGYNIL 574 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~p~~~~~~~l 574 (658)
..+|..+...+.+..+++-|...|.......|.+...|-.........|+.-++..+|.-- . ..|-.|+..-|-..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~ 929 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCA 929 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHH
Confidence 6788888888888999999999999999998888888888887778888888888888662 2 12334444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL---------HGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
......+|+.++-+...+.+-. .|.+.+...|.+.....-+.+.+.+|.+...+..
T Consensus 930 te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 930 TEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445566666655544443322 1344456677777777777777777777766654
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.1e-07 Score=88.98 Aligned_cols=396 Identities=14% Similarity=0.105 Sum_probs=193.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH
Q 006154 189 SHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN-VVCFNMIINEACQVGDL 267 (658)
Q Consensus 189 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 267 (658)
.+....|+++.|+..|.+.+... ++|-..|.--..+|...|++++|.+=-.+-++. .|+ .-.|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34556788888888888888765 447777877888888888888887766666554 444 34777888888888888
Q ss_pred HHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHH-HH------HHHHHHc---CCCCChhhHHHHHHHHHhc
Q 006154 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAE-EI------RYAMIKA---GIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~------~~~~~~~---~~~~~~~~~~~li~~~~~~ 337 (658)
++|+.-|.+ -... -+.+...++.+.+++. .+.+. +. +..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~---GL~~-d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 87 EEAILAYSE---GLEK-DPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHH---Hhhc-CCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888888877 3332 1224555666666551 11110 00 0000000 0000011122222211110
Q ss_pred ----------CChHHHHHHHHHH-----HHCC-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCh
Q 006154 338 ----------GSSEEALRLCDEM-----VKRG-------LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID-KHICPDH 394 (658)
Q Consensus 338 ----------g~~~~A~~~~~~~-----~~~g-------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~ 394 (658)
.++..+.-.+... ...| ..|... . ........++.+ .....-.
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-----------~---~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ-----------E---HNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc-----------c---CCCCCccchhHHHHHHHHhh
Confidence 0011111111000 0000 000000 0 000000000000 0000001
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH------
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG------ 468 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~------ 468 (658)
.-...+.++..+..+++.|.+.+....+.. .+..-++....+|...|.+.+.........+.|.. ...-|+
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 112334444445555555555555554443 23333444444455555444444444444333321 111111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------------------------HHHHHHHHHHhcCCHHHHHHHH
Q 006154 469 -TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV-------------------------IYNSIINGLCKDASLDAAKSLL 522 (658)
Q Consensus 469 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~a~~~~ 522 (658)
.+..+|.+.++++.++..|.+.......|+.. -...-...+.+.|++..|...+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 12223344445555555555444332222211 1112244556777888888888
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 523 QASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
.++....|.|...|....-+|.+.|.+..|+.-.+..++.. ++....|.-=..++....++++|.+.|++.++. .|+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~ 458 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPS 458 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence 88888777788888888888888888888877777777652 233444555555666666777777777777764 455
Q ss_pred HHHHHHHHHHHHh
Q 006154 603 YVTYTTLVTRFSK 615 (658)
Q Consensus 603 ~~~~~~l~~~~~~ 615 (658)
..-+..-+.-|..
T Consensus 459 ~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 459 NAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHH
Confidence 4444443333333
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=8.4e-08 Score=85.41 Aligned_cols=351 Identities=13% Similarity=0.085 Sum_probs=159.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 006154 184 WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNM-IINEAC 262 (658)
Q Consensus 184 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~ 262 (658)
+.+.+..+.+..+++.|++++..-.+.. +.+......+...|....++..|-+.++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444555555556666666555555442 124444455555555555666666666665443 233333321 123344
Q ss_pred hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 263 QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIIN--GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
+.+.+..|+++... |... |+...-..-+. .....+++..+..+.++....| +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~---~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFL---LLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHH---hcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 55555666665555 2221 11111111111 1123444555555444443211 223333333334455566
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHhcCChHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFT----YSILTKGLCRNGCVKQAFKL 416 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~ 416 (658)
+.|.+-|+...+-|--.....|+..+. ..+.|+.+.|++...+++++|++-.+.. -.-.++. ...|+ -..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHH
Confidence 666555555544332223344444332 3344555555555555555544311100 0000000 00000 0000
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 417 HNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
.... -+..+|.-...+.+.++++.|.+.+-.|.-+. ...|++|...+.-. -..+++.+..+-+.-+.+..+
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0000 01123333444566778888887777765432 23455665544321 123455555555555555434
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
....|+..++-.||+..-++-|-+++.+-...... +...|+.|=......-..++|++-++.+.
T Consensus 308 -fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 -FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred -CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567777777888888777777776654333222 44444443333333445666666555443
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.7e-05 Score=82.50 Aligned_cols=533 Identities=16% Similarity=0.149 Sum_probs=258.6
Q ss_pred cccccccCCCCCCCCchhhhHHHHHHhccCCch-hh-hhhhCCC-CCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCC
Q 006154 16 LSRAFHVGKQFANPSTEDIVFRAICVNLRQRKW-KI-LEQMAPS-LTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSH 92 (658)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~-l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~ 92 (658)
+.+..-..-+..||+-.++++..+...-..-.. +. +...... ...++|..|=++ +..+.-+.+.+.....+ ..
T Consensus 795 ~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkR--NRLklLlp~LE~~i~eG--~~ 870 (1666)
T KOG0985|consen 795 LQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKR--NRLKLLLPWLESLIQEG--SQ 870 (1666)
T ss_pred HHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhh--hhHHHHHHHHHHHHhcc--Cc
Confidence 334444455567777666655544222111010 11 1222233 345555555443 33556666666555433 67
Q ss_pred CHHhHHHHHHHHHcCCCchHH-H--------HHHHHHHhcCC-----------CChHHHHHHHHhhccCCCCCHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDA-L--------LLMGNLMSANS-----------VSPLEFLEGLLDSYEICKATPAVFDAL 152 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a-~--------~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~l 152 (658)
++.+|++++.++..+++-.+- . ....+..+..+ ....+. ++. + .....|-.+
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~el----I~v---c-NeNSlfK~~ 942 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLEL----INV---C-NENSLFKSQ 942 (1666)
T ss_pred chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHH----HHh---c-CchhHHHHH
Confidence 888999999999987654431 0 01111111100 001111 110 1 111234444
Q ss_pred HHHHHhcCChhHHHHHH-----------HHHHhCCC--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCcCHH
Q 006154 153 VRACTQIGATEGAYDVI-----------QKLKVKGH--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG--YVENVN 217 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~-----------~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~ 217 (658)
.+-+.+..+.+.-.+++ ++....+. ..|+......+.++...+-+.+-++++++++-.. +..+..
T Consensus 943 aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~n 1022 (1666)
T KOG0985|consen 943 ARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRN 1022 (1666)
T ss_pred HHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchh
Confidence 44444444433322222 22222221 2345555555666666666666666666665321 122233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHH
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIIN 297 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 297 (658)
..|.|+-.-.+. +...+.++.+++..... | .+.......+-+++|..+|++ +..+....+.++.
T Consensus 1023 LQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkk--------f~~n~~A~~VLie 1086 (1666)
T KOG0985|consen 1023 LQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKK--------FDMNVSAIQVLIE 1086 (1666)
T ss_pred hhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHH--------hcccHHHHHHHHH
Confidence 344444333332 33444555555433211 1 122333444556666666665 2223334444443
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHH
Q 006154 298 GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEG 377 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~ 377 (658)
..+.++.|.+.-++.. ....|..+..+-...|...+|.+-|-+. -|+..|..+++...+.|.+++
T Consensus 1087 ---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1087 ---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred ---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHH
Confidence 2344555554444433 2345666666666666666666554332 255566666666666666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIV 457 (658)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (658)
-...+.-..++.-.|... ..|+-+|++.++..+..++. ..|+......+.+-|...+.++.|.-+|.
T Consensus 1152 Lv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---- 1218 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---- 1218 (1666)
T ss_pred HHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH----
Confidence 666555555444333332 34555666666655544332 12444455555555666666666655554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITY 536 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 536 (658)
+...|..|...+...|++..|...-++. .+..+|..+-.+|...+.+.-| ++...+.. ...-.
T Consensus 1219 -----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeL 1282 (1666)
T KOG0985|consen 1219 -----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADEL 1282 (1666)
T ss_pred -----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhH
Confidence 3344566666666666666666554443 2456666666666665554433 22222222 55666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------CCHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH-GII------PDYVTYTTL 609 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~------p~~~~~~~l 609 (658)
..++..|-..|-+++-+.+++..+... ....-.|+.|.-.|.+- ++++..+.++-.-.. +++ -....|+-+
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 777777878888888777777665431 22344566666556554 233333333222111 110 123445555
Q ss_pred HHHHHhCCChHHH
Q 006154 610 VTRFSKNCSPEEV 622 (658)
Q Consensus 610 ~~~~~~~g~~~~A 622 (658)
...|.+-..++.|
T Consensus 1361 vfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhhhhHH
Confidence 5555555555544
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=3.3e-06 Score=84.59 Aligned_cols=446 Identities=14% Similarity=0.039 Sum_probs=223.9
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHh-HHHHHHHHHcCCCchHHHHHHHHHHhc----CCCChHHHHHHHHhhccCCCCCH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLES-SCAIVHLLVNWRRFDDALLLMGNLMSA----NSVSPLEFLEGLLDSYEICKATP 146 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~ 146 (658)
.+.+.|..|.+-... .|+.++ +..+..+...+|++--|++.+..+-+- .-+...++.+.....+++...+-
T Consensus 458 ~df~ra~afles~~~----~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 458 GDFDRATAFLESLEM----GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred CchHHHHHHHHhhcc----CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 456777777765432 445444 566777777788887776655433210 11222333444444444444433
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
+-..+++. .-..++.+|..+|-+-- .-...+.+|....++++|+.+-+. .|.+.-...-.+.+.++
T Consensus 534 ykvra~la--il~kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 534 YKVRAMLA--ILEKKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHHHHH--HHHhhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHH
Confidence 33233322 33345667766664321 123456667777777777766543 23333334445566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChH
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVE 306 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 306 (658)
...|+-++|-++- .+ +-.+ .+.|..|.+.|.+..|.+.... ...+..|......+..++.+..-++
T Consensus 600 ~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n-----~~~l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 600 MDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALN-----DEELLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcC-----HHHhhccHHHHHHHHHHHHhhHHHH
Confidence 7777777766542 11 1112 2457778888888777765533 1113345555555666666666666
Q ss_pred HHHHHHHHHHHc----------------------CCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 307 FAEEIRYAMIKA----------------------GIDCNVRTY-ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 307 ~A~~~~~~~~~~----------------------~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
.|-++|+++..- .+|..+++. ......+...|+++.|...|-+... ..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~ 736 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LI 736 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HH
Confidence 666666655411 001111110 1112222233333333333322110 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 006154 364 STIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN 443 (658)
Q Consensus 364 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 443 (658)
..+.+.....++.+|+.+++.+.++... ..-|..+...|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 2233344455566666666655544221 2234455556666666666666654321 2344556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQ 523 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 523 (658)
+++.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+...++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 6666665554432 222334444444444555666666665553332 122 23455666666666555544
Q ss_pred HHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 524 ASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
+--.. .-..+...+..-|-..|++..|...|-+..+ |.+-++.|...+-+++|.++-
T Consensus 875 k~h~d--~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD--HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh--hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 32111 1334445555666666777777666654443 445556666666666666554
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.4e-06 Score=88.31 Aligned_cols=423 Identities=15% Similarity=0.129 Sum_probs=252.8
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-C--------C
Q 006154 144 ATPAVFDALVR--ACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-G--------Y 212 (658)
Q Consensus 144 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g--------~ 212 (658)
.++.+-..++. .|...|+.+.|.+-.+-+.. ...|..|...+.+.++.+-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 35556666654 56788999999988887654 468999999999988888777666655421 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.++ .+-..+...-...|.+++|..+|++.++. ..|=..|...|.+++|+++-+. .. .+. -..||
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~----~D-RiH-Lr~Ty 861 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAET----KD-RIH-LRNTY 861 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhh----cc-cee-hhhhH
Confidence 122 12222222334678999999999988763 3444567778999999998876 11 122 23456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
.....-+-..++.+.|++.|++.. .|--.++..|.. ++.....+.+.+ .|...|.-....+-..
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~e------~p~~~e~Yv~~~------~d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLKE------YPKQIEQYVRRK------RDESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHHh------ChHHHHHHHHhc------cchHHHHHHHHHHhcc
Confidence 666677777888888888887653 222222222211 112222222222 2455566666666678
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
|+.+.|+.+|....+ |-.+++..|-.|+.++|-.+-++-. |....-.+.+.|-..|++.+|...|
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888887764 4566777778888888877765532 5566667888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChH----------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 453 SSMIVRGLIPDIITYGTLIDGYCKGGNIE----------------GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 453 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~----------------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.+... +...|..| +.++++ .|-+.|++. |.. ....+..|-+.|.+.
T Consensus 991 TrAqa---------fsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~ 1052 (1416)
T KOG3617|consen 991 TRAQA---------FSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIG 1052 (1416)
T ss_pred HHHHH---------HHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchH
Confidence 76543 33333322 222222 222223221 110 112233455666666
Q ss_pred HHHHHHH---------HH-HHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 517 AAKSLLQ---------AS-QRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 517 ~a~~~~~---------~~-~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+|+++-= -+ ....+. |+...+.-.+.++...++++|..++-...+ |...+.. |+..+..
T Consensus 1053 kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~ 1122 (1416)
T KOG3617|consen 1053 KALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVR 1122 (1416)
T ss_pred HHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCc
Confidence 6654421 11 122333 777788888888888888888888776665 2222332 3333443
Q ss_pred HHHHHHHHHHH-cCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCc
Q 006154 586 QARELMKVMIL-HGIIPDYV----TYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAED 656 (658)
Q Consensus 586 ~A~~~~~~~~~-~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 656 (658)
--.++-+.|.- +.-.|+.. ....+...|.++|.+..|.+-|-+.-.+ -.-++++.++|+.++
T Consensus 1123 vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1123 VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 34444444431 21233433 4566677888999999888766554321 124567777887765
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=7.8e-08 Score=92.33 Aligned_cols=215 Identities=15% Similarity=0.010 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHHHHCC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 339 SSEEALRLCDEMVKRG-LMPN--NVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFK 415 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (658)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|.+..+..+. +...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555544321 1111 233455555555566666666666665554322 44555556666666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK 495 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 495 (658)
.|+..++..+. +..++..+...+...|++++|.+.+++..+.. |+..............+++++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 66666554433 34455555555556666666666666655542 221111111112223455666666665443321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRI-------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.|+...+ .+. ....|+...+ ..++.+.+. .+....+|..++..+.+.|++++|...|++..+.
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1221111 111 1223333322 122222211 1113345666666666666666666666666654
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.10 E-value=5e-06 Score=86.39 Aligned_cols=462 Identities=10% Similarity=-0.025 Sum_probs=244.1
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFD 150 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (658)
+++...|+..|-.+.+.. +--...|..+++++....+..+|.+.|+...+ -.+.+..+..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe------------------LDatdaeaaa 530 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE------------------LDATDAEAAA 530 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------CCchhhhhHH
Confidence 455666777777666543 22244788888888877777778888877765 5666778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCc-cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHS-VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKE 229 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 229 (658)
.....|++..+++.|..+.-..-+.... .-...|....-.|.+.++...|+..|+...+.. +-|...|..+..+|.++
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 8899999999999998884433332111 112234444556677888999999999988865 45788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhcccccC---CcCCChhhHHHHHHHHHhcCCh
Q 006154 230 CKLEEALSLYYRMLKSGIWPNVV-CFNMIINEACQVGDLEFALKLFRKMGVMSGD---SVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 230 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 305 (658)
|.+..|.++|.+.... .|+.. .---.....+..|.+.+|+..+..+...... +..--..++..+...+...|-.
T Consensus 610 Gry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred CceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999887764 34432 2222233456778899888888774211110 0111123333333333334444
Q ss_pred HHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcCChH------HHHHHH-HHHHHCCC----------------
Q 006154 306 EFAEEIRYAMIK-------AGIDCNVRTYATLIDGYARGGSSE------EALRLC-DEMVKRGL---------------- 355 (658)
Q Consensus 306 ~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~~~~~g~---------------- 355 (658)
..|.+.++...+ +....+...|-.+.+++.-.-..+ ....++ .+....+.
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 444444433322 211112222222221111000000 000000 01111111
Q ss_pred ----CCcHhHHHHHHHHHHh------c--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 356 ----MPNNVVYNSTIHWLFA------E--GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 356 ----~p~~~~~~~ll~~~~~------~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
..+..+|..++..|.+ . .+...|+..+.+.++..- -+..+|+.|.-. ...|++.-+.--|-+-...
T Consensus 768 hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 768 HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 1123334444333322 1 122355666666555321 244455554433 3334554444444333333
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH
Q 006154 424 HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK----VEKKPNL 499 (658)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 499 (658)
.+. ...+|..+.-.+.+..+++-|...|...+...+ .+...|-.........|+.-++..+|..-.+ .|--++.
T Consensus 846 ep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 EPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccc-chhheeccceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 222 455666666666677777777777777665422 2444444433333445666666666654211 1222232
Q ss_pred HHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASL----------DAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.-+.....-....|+. ..|.-.++......+.+..+|...+...-..+.+..|.+...+.
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2222222222233332 23333444445555556677777777666677777766666554
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=7.7e-07 Score=79.44 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=180.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH-HHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL-VIYALC 227 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l~~~~~ 227 (658)
+++.+..+.+..++++|++++....+..++ +......|...|.+..++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 455666667778888888888888776433 6666777777888888888888888888765 355444432 234556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCCh
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVVC--FNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 305 (658)
+.+.+.+|+.+...|... |+... ...-.......+|+..+..++++ ..+.+ +..+.+...-...+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ---lp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQ---LPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHh---ccCCC---ccchhccchheeeccccH
Confidence 778888888888777653 22221 11111223456888888888887 43321 344444455556688888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------cH-------------
Q 006154 306 EFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP-------------NN------------- 359 (658)
Q Consensus 306 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-------------~~------------- 359 (658)
+.|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++.++|++. |.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 88888888887764333455666544 3446788888888888888876531 11
Q ss_pred --hHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006154 360 --VVYNSTIHWLFAEGDVEGALFVLSDMIDKH-ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILI 436 (658)
Q Consensus 360 --~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 436 (658)
..+|.-...+.+.|+.+.|.+.+.+|--+. ...|++|...+.-. -..+++.+..+-+.-+++.++- ...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHH
Confidence 112222233456677777777776664332 33456665544321 1234455555555566665553 455677777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006154 437 NYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~ 454 (658)
-.||+..-++-|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 777777777777776654
No 95
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=1.6e-07 Score=90.11 Aligned_cols=200 Identities=12% Similarity=-0.031 Sum_probs=126.2
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..|...+.++.+.|++++|...+++.++ ..|.++.+|..+...+...|++++|.+.|++..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~------------------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA------------------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45577777888888888888888888776 466778888888888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC 253 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 253 (658)
+..+. +..+|..+...+...|++++|.+.+++..+.. |+..............++.++|...|++..... .|+...
T Consensus 126 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~ 201 (296)
T PRK11189 126 ELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG 201 (296)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH
Confidence 76433 56677777778888888888888888888753 332211222222345667888888886654331 223222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccccCCc--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006154 254 FNMIINEACQVGDLEFALKLFRKMGVMSGDSV--L-PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAG 319 (658)
Q Consensus 254 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 319 (658)
+ .+ .....|+...+ +.++.+..-..... . .....|..+...+.+.|++++|...|++..+.+
T Consensus 202 ~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 202 W-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 22 22334554433 23333110111111 1 123467777777777777777777777777654
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.8e-05 Score=89.94 Aligned_cols=370 Identities=12% Similarity=0.052 Sum_probs=221.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNV-VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
....+...|++.+|......... .+.. .............|+++.+...++. +.......+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~---lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNA---LPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHh---CCHHHHhcCcchHHHHHHHHH
Confidence 34456667777777665443321 1110 1112222334456788887777776 321111112223344455566
Q ss_pred hcCChHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGI------DCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHW 368 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~ 368 (658)
..|++++|...+....+.-- .+. ......+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 78899999888887754310 111 112222334556789999999999887663111121 234556666
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChhhHHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDK----HI-CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE----HMV--G-DAYSYNILI 436 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~ 436 (658)
+...|++++|...+.+.... |. .....++..+...+...|++++|...+++..+. +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77889999999888887643 11 111234455666778899999999988876553 211 1 122344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHH-----HHHH
Q 006154 437 NYLCKSNNLAAAKQLLSSMIVR--GLIPD--IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIY-----NSII 506 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~ 506 (658)
..+...|++++|...+.+.... ...+. ...+..+...+...|+++.|...+.......... ....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999888876553 11121 2334445566778899999999888775421110 11111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDA----ITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN-KVGYNILINF 577 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~ 577 (658)
..+...|+.+.|...+........... ..+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334557888888888776554322211 12456777888899999999999887652 32222 3456677788
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 006154 578 LCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+.|+.++|...+.++.+.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999998875
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1.4e-06 Score=87.20 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=118.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASL 515 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 515 (658)
+.+......+.+|+.+++.+..+.. -..-|..+.+-|...|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566677777777777766532 22335556677777788888877775542 234566777788888
Q ss_pred HHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 516 DAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
..|.++-++. .++. ....|-.-..-+-+.|++.+|.++|-.+.. |+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 8777765543 3344 555666666666777777777777654432 332 356677778777777766543
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 595 ILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 595 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
-- ..-..|...+..-|...|+.+.|.+-|-+.. -|.+-++.|..++.|++|
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDA 927 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHH
Confidence 21 1123456667777888999999987765543 345555566666665554
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=1.5e-06 Score=87.01 Aligned_cols=203 Identities=9% Similarity=-0.060 Sum_probs=116.9
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..|..++..+...++.+.+...+....+. .+...............+...|++++|.+.+++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l 70 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQA---------------LAARATERERAHVEALSAWIAGDLPKALALLEQLL 70 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH---------------hccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445666666666667777765555544431 00111112233334456677788888888888887
Q ss_pred hCCCccCHHhHHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 174 VKGHSVSIHAWNNFLSHLV----KLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
+..+. +...+.. ...+. ..+....+.+.++.. ....+........+...+...|++++|...+++..+....
T Consensus 71 ~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~- 146 (355)
T cd05804 71 DDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD- 146 (355)
T ss_pred HHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Confidence 76432 4444432 11222 234444555554441 1111222334445556677788888888888888776422
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC-cCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS-VLPNS--VTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
+...+..+..++...|++++|...+++. .... ..|+. ..|..+...+...|++++|..++++....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~---l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESW---RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhh---hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 4556777777888888888888888773 2211 11222 23446677777888888888888777533
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=1e-06 Score=80.30 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=200.7
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+.+++-...++..+...|++.+|...+...++ +.|.+-.++..-...|...|+-.-|+.=+.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve------------------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~ 96 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVE------------------GDPNNYQAIFRRATVYLAMGKSKAALQDLS 96 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------------------CCchhHHHHHHHHHHHhhhcCCccchhhHH
Confidence 34566677889999999999999999998887 677777777777889999999999999999
Q ss_pred HHHhCCCccCHHhHH-HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 171 KLKVKGHSVSIHAWN-NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
+.++. +||...-. .-...+.++|++++|..=|+.++... |+..+- ..+..+.-..++-..
T Consensus 97 rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~------------ 157 (504)
T KOG0624|consen 97 RVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWV------------ 157 (504)
T ss_pred HHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHH------------
Confidence 98886 55553322 23456788999999999999998764 332111 111111111111111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
....+..+...|+...|+.....+ .+- .+-|...|..-..+|...|++..|+.=++...+.. ..+..+.--
T Consensus 158 ----l~~ql~s~~~~GD~~~ai~~i~~l---lEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~yk 228 (504)
T KOG0624|consen 158 ----LVQQLKSASGSGDCQNAIEMITHL---LEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYK 228 (504)
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHH---Hhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 112233344556777777776663 322 23356666666777777777777776666666554 345555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGC 409 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (658)
+-..+...|+.+.++....+..+. .||....... | ..+.+..+.++.|.+ ....++
T Consensus 229 is~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~ 284 (504)
T KOG0624|consen 229 ISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKH 284 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhh
Confidence 666667777777777777777665 3443322111 1 111222222222221 233455
Q ss_pred hHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYS---YNILINYLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 485 (658)
+.++++..+...+..+...... +..+-.++...+++.+|++...+..+. .| |..++.--..+|.-...++.|+.
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5666666666666544322222 333445556667777777777766653 23 36666666677777777777777
Q ss_pred HHHHHHhC
Q 006154 486 VYENMKKV 493 (658)
Q Consensus 486 ~~~~~~~~ 493 (658)
-|+...+.
T Consensus 363 dye~A~e~ 370 (504)
T KOG0624|consen 363 DYEKALEL 370 (504)
T ss_pred HHHHHHhc
Confidence 77777764
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.8e-06 Score=86.39 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CcH--hHHHHHHH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLM-PNN--VVYNSTIH 367 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-p~~--~~~~~ll~ 367 (658)
....+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++....... |+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344556666667777777777666654 444556666666666777777777776666554211 121 23445566
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006154 368 WLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~ 387 (658)
.+...|++++|..++++...
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhc
Confidence 66667777777777766643
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=2.8e-05 Score=75.62 Aligned_cols=427 Identities=12% Similarity=0.144 Sum_probs=240.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.+..+|..|++-+..+ ..+++.+.++++... ++-++..|...+..-.+.++++....+|.+.+.. ..+...|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 5788889999999887766 889999999998875 4457788888899999999999999999888865 35666777
Q ss_pred HHHHHHHhc-CCHHH----HHHHHHHH-HhCCCCCChh-hHHHHHHHHHh---------cCCHHHHHHHHHHhcccccCC
Q 006154 221 LVIYALCKE-CKLEE----ALSLYYRM-LKSGIWPNVV-CFNMIINEACQ---------VGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 221 ~l~~~~~~~-g~~~~----A~~~~~~m-~~~~~~p~~~-~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 284 (658)
..+.--.+. |+... ..+.|+-. .+.|+++-.. .|+..+..+-. +.+++...+++++ +....
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr---al~tP 167 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR---ALVTP 167 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH---HhcCc
Confidence 666543332 22222 22333332 3445443332 35555543321 2234445555555 22211
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCcHhH-
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK--RGLMPNNVV- 361 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~- 361 (658)
+ +++++-.+=|....+ ..|..|-.-++ --+...+..|.++++++.. .|+.....+
T Consensus 168 m-----------------~nlEkLW~DY~~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v 225 (656)
T KOG1914|consen 168 M-----------------HNLEKLWKDYEAFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAV 225 (656)
T ss_pred c-----------------ccHHHHHHHHHHHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence 1 111111111111110 00111111111 0112234444444444432 222111111
Q ss_pred --------------HHHHHHHHHhcC------CH--HHHHHHHHHHH-hCCCCCChhhHH-H----HHHHHHhcCC----
Q 006154 362 --------------YNSTIHWLFAEG------DV--EGALFVLSDMI-DKHICPDHFTYS-I----LTKGLCRNGC---- 409 (658)
Q Consensus 362 --------------~~~ll~~~~~~g------~~--~~a~~~~~~~~-~~~~~~~~~~~~-~----l~~~~~~~g~---- 409 (658)
|..+|..=...+ .. ....-.+++.+ -.+..|+..-.. . .-+.+...|+
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 222222211111 00 00111111111 112222221110 0 0112222333
Q ss_pred ---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006154 410 ---VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN---NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 410 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 483 (658)
.+++.++++...+.-...+..+|..+...--..- ..+.....++++...-..--..+|..++..-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3556666665554433334444444433222222 2555666666666543222345677778877788888999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 484 VQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 484 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+|.++.+.+..+ +..++++++..+| .++..-|.++|+--.+....++..-...++.+...++-..|..+|++....
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 99999998887776 6677788887766 467788999999888887778888888888888899999999999999887
Q ss_pred CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 563 GIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 563 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
++.|+ ...|..++.--..-|+...++++-+++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66665 467889998888899999999888887653
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=9.1e-08 Score=93.34 Aligned_cols=250 Identities=12% Similarity=0.069 Sum_probs=153.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+++.++..+. +......|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 3444455555455444444322 4444444444444444444555555555444333 4444444444555555555555
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 450 QLLSSMIVRGLI--------PDIITYGTLIDGYCKGGNIEGAVQVYENM-KKVEKKPNLVIYNSIINGLCKDASLDAAKS 520 (658)
Q Consensus 450 ~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 520 (658)
..++.-+...++ ++...-.. ..+..........++|-++ ...+..+|+.+...|.-.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555444332110 00000000 0111112223334444444 444445788888888888899999999999
Q ss_pred HHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 006154 521 LLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILH-- 597 (658)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 597 (658)
.|+.+....|.|...||.|+..++...+.++|+..|+++++ +.|+ +...-.|.-+|...|.+++|.+.|-.++..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998 4676 345556778899999999999998876632
Q ss_pred -------CCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006154 598 -------GIIPDYVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 598 -------g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
+..++..+|.+|-.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1223445777777777777777654443
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=7.6e-06 Score=74.77 Aligned_cols=312 Identities=11% Similarity=0.027 Sum_probs=179.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 006154 251 VVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHN---CIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTY 327 (658)
Q Consensus 251 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 327 (658)
+.-..-+...+...|++..|+.-|... .+ .|+..|. .-...|...|+-..|..=+.+..+. +||-..-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaA---ve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAA---VE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH---Hc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 334445555666666666666666652 22 1222232 2234555566666666666665544 4443222
Q ss_pred H-HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 328 A-TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 328 ~-~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
. .-...+.+.|.+++|..=|+.+.... |+..+ ...++.+.--.++- ......+..+..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASG 167 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhc
Confidence 1 11234455666666666666655542 21110 01111111111111 112233444556
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|+...|++....+++..+- |...|..-..+|...|++..|+.=++...+..- .+..++--+-..+...|+.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHH
Confidence 78888888888888887543 777788888888889998888877766655422 2455555566777788888888888
Q ss_pred HHHHHhCCCCCCHHHH----HHH---H------HHHHhcCCHHHHHHHHHHHHHcCCC-CHhh---HHHHHHHHHHcCCH
Q 006154 487 YENMKKVEKKPNLVIY----NSI---I------NGLCKDASLDAAKSLLQASQRIGLL-DAIT---YNTLINGYFINGKI 549 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~----~~l---~------~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~ 549 (658)
.++..+. .||.... ..+ . ......+++.++.+-.+...+..|. .... +..+-.++...|++
T Consensus 246 iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 246 IRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 8888773 5554422 111 1 1123455666666666666666665 3333 33344555666777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+|++...+.++.. +.|..++.--..+|.-...+++|+.-|+.+.+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777777777642 223666766777777777777777777777764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.4e-05 Score=90.84 Aligned_cols=370 Identities=12% Similarity=-0.036 Sum_probs=229.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
...+...|++.+|...... .... ..-..............|+++.+...+..+.......+..........+...
T Consensus 348 a~~~~~~g~~~~Al~~a~~---a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALA---AGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHCCCHHHHHHHHHH---CCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 3445556777766665554 1111 0001111222334556678887777776652211112222334445556778
Q ss_pred CChHHHHHHHHHHHHCCC------CCcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 006154 338 GSSEEALRLCDEMVKRGL------MPNN--VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDH----FTYSILTKGLC 405 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~------~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 405 (658)
|+++++...+......-- .+.. .....+...+...|++++|...+++..+.....+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999999988754311 1111 12222334566789999999999988764222222 23455666677
Q ss_pred hcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHH
Q 006154 406 RNGCVKQAFKLHNQVLEEHMV-----GDAYSYNILINYLCKSNNLAAAKQLLSSMIVR----GLI--P-DIITYGTLIDG 473 (658)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p-~~~~~~~li~~ 473 (658)
..|++++|...+++....... ....++..+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999888753111 11234556677788999999999998876652 221 1 22334455566
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhH-----HHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVE--KKP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITY-----NTLING 542 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~-----~~l~~~ 542 (658)
+...|++++|...+.+..... ..+ ....+..+.......|++++|...++.+...... ....+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 777899999999998876531 112 2334444566777899999999999887653221 11111 112244
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCYQQARELMKVMILH----GIIPD-YVTYTTLVTRFS 614 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~ 614 (658)
+...|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 55689999999998776542211111 11356777888999999999999988753 33222 235566677789
Q ss_pred hCCChHHHHHHHHHHHHC
Q 006154 615 KNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 615 ~~g~~~~A~~~~~~m~~~ 632 (658)
+.|+.++|...+.+..+.
T Consensus 743 ~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999999886
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1e-07 Score=89.97 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH-HHHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI-AEAFAMFS 557 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 557 (658)
.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++++.....+.++.+...++.+....|+. +.+.+.+.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 345555555554432 3344444444444455555555555555554444444444444444444444444 33444444
Q ss_pred HHHH
Q 006154 558 EMRN 561 (658)
Q Consensus 558 ~~~~ 561 (658)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=5.7e-08 Score=91.71 Aligned_cols=252 Identities=12% Similarity=0.048 Sum_probs=148.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006154 331 IDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV 410 (658)
Q Consensus 331 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (658)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++... ..|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 344556788888876555 222222223344556677788888776544 333332 355555555554444333444
Q ss_pred HHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 489 (658)
+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555444444333322 22233333345566678888888777542 3566666777888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 490 MKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 490 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
|.+. . +..+...+..++.. ...+.+|..+|+++......++.+.+.++.++...|++++|.+++++..+.+ +
T Consensus 157 ~~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 157 MQQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HHCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HHhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8764 2 33444445544433 2357888888888777655577778888888888888888888888876654 3
Q ss_pred CChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 006154 566 VNKVGYNILINFLCKFGCY-QQARELMKVMILH 597 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 597 (658)
-+..+...++-+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3456666677777777776 5566777777653
No 107
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=0.00023 Score=73.79 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=153.5
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH
Q 006154 106 NWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN 185 (658)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 185 (658)
..++|..|...+.++.+ ..|..+.+-..-.-...+.|+.++|..+++.....+.. |..+..
T Consensus 21 d~~qfkkal~~~~kllk------------------k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq 81 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK------------------KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQ 81 (932)
T ss_pred hhHHHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHH
Confidence 45778888888887776 34444444444444567889999999999988877655 888999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 186 NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 186 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 265 (658)
.+-..|.+.|+.++|..+|++.... .|+......+..+|.|.+++.+-.+.--++-+. ++-+...+=++++.+.+.-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 9999999999999999999999875 477888888888999998887655555455443 2334555556666655432
Q ss_pred C----------HHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCChhhHHHHHHHH
Q 006154 266 D----------LEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR-YAMIKAGIDCNVRTYATLIDGY 334 (658)
Q Consensus 266 ~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~ 334 (658)
. ..-|.+.++.+ ....|-.-+..-...-...+-..|++++|.+++ ....+.-...+...-+.-+..+
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~--l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKL--LEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred cCCcccccchhHHHHHHHHHHH--hccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1 23455566663 223332112222222334455778899999988 3444433334445555677888
Q ss_pred HhcCChHHHHHHHHHHHHCCC
Q 006154 335 ARGGSSEEALRLCDEMVKRGL 355 (658)
Q Consensus 335 ~~~g~~~~A~~~~~~~~~~g~ 355 (658)
...+++.+..++-.++...|.
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCC
Confidence 889999999999999988864
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.85 E-value=0.00014 Score=70.99 Aligned_cols=427 Identities=13% Similarity=0.156 Sum_probs=252.5
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+.+.++|..+++-+... ..++++..+++++. ..|.++.+|..-+..-.+..+++..+.+|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~------------------~FP~s~r~W~~yi~~El~skdfe~VEkLF~ 77 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN------------------VFPSSPRAWKLYIERELASKDFESVEKLFS 77 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc------------------cCCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66888999999887765 89999999999887 678889999999999999999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhc-CCHh----HHHHHHHHHH-hCCCCcC-HHHHHHHHHH---------HHhcCCHHH
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKL-NEIG----RFWKLYKEMV-SCGYVEN-VNTFNLVIYA---------LCKECKLEE 234 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~-g~~~----~a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~ 234 (658)
+.+.. ..+...|...+..-.+. |+.. ...+.|+-.+ +.|+.+- ...|+..+.. +..+.+.+.
T Consensus 78 RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~ 155 (656)
T KOG1914|consen 78 RCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA 155 (656)
T ss_pred HHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence 99886 34688888888755443 2322 2334444433 4453332 2345555433 233345677
Q ss_pred HHHHHHHHHhCCCCCChh-hHH------HHHHHHH-------hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVV-CFN------MIINEAC-------QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~-~~~------~li~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
..++|++++..-+. +.. .|+ .-|+... +...+..|.++++++..+. .|...+..+ .-
T Consensus 156 vRriYqral~tPm~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt-~GL~r~~~~-------vp 226 (656)
T KOG1914|consen 156 VRRIYQRALVTPMH-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLT-RGLNRNAPA-------VP 226 (656)
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hhhcccCCC-------CC
Confidence 78888888764222 111 111 1111111 1223445555555532111 111111000 00
Q ss_pred hcCChHH--HHHHHHHHHHc----CCC-CChhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHH-----HHHHH
Q 006154 301 KLGRVEF--AEEIRYAMIKA----GID-CNVRT-YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVY-----NSTIH 367 (658)
Q Consensus 301 ~~g~~~~--A~~~~~~~~~~----~~~-~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~ll~ 367 (658)
..|--++ ..+++....+. ++. .+... -+.+.-+| +++ +.-.+..|+..-. ...-+
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay------eQ~------ll~l~~~peiWy~~s~yl~~~s~ 294 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY------EQC------LLYLGYHPEIWYDYSMYLIEISD 294 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH------HHH------HHHHhcCHHHHHHHHHHHHHhhH
Confidence 0011111 11222222111 110 00000 00000000 000 1111222222110 00111
Q ss_pred HHHhcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 368 WLFAEGD-------VEGALFVLSDMIDKHICPDHFTYSILTKGLCRN---GCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 368 ~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
.+...|+ -+++..+++..++.-..-+..+|..+...--.. ...+.....+++++.....--.-+|..+++
T Consensus 295 l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn 374 (656)
T KOG1914|consen 295 LLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMN 374 (656)
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHH
Confidence 2233333 345556666655433333444444443321111 135666677777766543334457888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.-.+..-++.|..+|.+..+.+..+ ++...++++.-+| .++.+-|.++|+--.+. ...++.-....++-+...++-.
T Consensus 375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcch
Confidence 8889999999999999999887766 7788888888776 58889999999987765 4446666677888888999999
Q ss_pred HHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+..+|++....... ....|..++.--..-|+...+.++-+++..
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999988433 678999999999999999999998888755
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=4.9e-07 Score=90.73 Aligned_cols=222 Identities=15% Similarity=0.057 Sum_probs=170.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
+|-...-..+...+.+.|-...|..++++.. .|..++.+|+..|+..+|..+..+..+ -+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444566677788888888888887764 356678888888888888888888777 35788888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
.+......-+++|.++.+..... .-..+.......+++.++.+.++...+.++....+|-.+..+..+.++++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 88777777788888887765432 11122222334688888889998888888888888888888888889999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.|.+.|....... +.+...||.+..+|.+.|+-.+|...++++.+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9888888887742 3346788899889999999899999888888776 4567778788888888889998888888876
Q ss_pred HC
Q 006154 631 LS 632 (658)
Q Consensus 631 ~~ 632 (658)
..
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 64
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1e-06 Score=86.16 Aligned_cols=258 Identities=16% Similarity=0.057 Sum_probs=155.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGA 378 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a 378 (658)
+.+.|++.+|.-.|+...+.+ |-+...|..|.......++-..|+..+.+..+.... +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445555666666666555554 445555555555555555555555555555554222 344445555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HH
Q 006154 379 LFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSM-IV 457 (658)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~ 457 (658)
+..++..+...++ |..+..+ ...++++.- +-.++.. .+....++|-++ ..
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~-------------~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSS-------------HLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHH-------------HHHHHHHHHHHHHHh
Confidence 5555555543221 1111000 000000000 0011111 122333444333 33
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHH
Q 006154 458 RGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYN 537 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 537 (658)
.+..+|......|.-.|.-.|++++|+..|+.++...+. |..+|+.|...+....+..+|...++++.+..|.-+.+..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 444467777888888888899999999999999886433 6778999999999999999999999999999988888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVG---------IAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.|+-.|...|.+++|...|-..+... ..++...|..|=.++.-.++.|.+.
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 88889999999999998887765421 1122345555555555555555443
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.79 E-value=0.00036 Score=72.47 Aligned_cols=518 Identities=14% Similarity=0.079 Sum_probs=277.5
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDA 151 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (658)
.+..+|+.-...+.++++-.+.+.++- +-.+.|.|+.++|..+++..-. ..+.+..+...
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLk--aLsl~r~gk~~ea~~~Le~~~~------------------~~~~D~~tLq~ 82 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLK--ALSLFRLGKGDEALKLLEALYG------------------LKGTDDLTLQF 82 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHH--HHHHHHhcCchhHHHHHhhhcc------------------CCCCchHHHHH
Confidence 356788888888887654333333333 3456788999999988876543 34457889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKEC- 230 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g- 230 (658)
+-.+|...|+.++|..+|++.... .|+......+..+|.|.+.+.+-.++--++-+. ++-+.+.+=++++...+.-
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999886 456777888888999988887655555555543 3445555555555554321
Q ss_pred C---------HHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 231 K---------LEEALSLYYRMLKSG-IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 231 ~---------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
. ..-|.+.++.+.+.+ ..-+..-...-...+-..|++++|++++..- ..+.-...+...-+.-++.+.
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~--la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAIT--LAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHH--HHHhccccchHHHHHHHHHHH
Confidence 1 234666677776654 2212223333344556789999999999431 222222334444556778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----------------hcCChHHHHHHHHHHHHCCCCCcHhHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA----------------RGGSSEEALRLCDEMVKRGLMPNNVVYNS 364 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 364 (658)
..+++.+..++-.++...| ..| |...++.+. ..+..+...+...+..... ....|-+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA 310 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLA 310 (932)
T ss_pred HhcChHHHHHHHHHHHHhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHH
Confidence 8999999999999998886 333 333332211 1222333333333322221 1122333
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--Chh---hHHHHH
Q 006154 365 TIHWL---FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--DAY---SYNILI 436 (658)
Q Consensus 365 ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~ 436 (658)
-+... ..-|+.+++.-.|-+-. |..| .|..=+..|...=..+.-..++.......... |.. .+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 33333 34477777654443222 1111 11111111111112222222222222111000 000 011111
Q ss_pred HHHHhcC-----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCChH---HHHHHHHHH
Q 006154 437 NYLCKSN-----NLAAAKQLLSSMI---VRG------LIPDII---------TYGTLIDGYCKGGNIE---GAVQVYENM 490 (658)
Q Consensus 437 ~~~~~~~-----~~~~A~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~~ 490 (658)
..-.-.| .-+.-..++.+.. ++| .-|+.. +-+.|++.+.+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111 1122222222211 111 222222 3456777888887765 344455554
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h
Q 006154 491 KKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-K 568 (658)
Q Consensus 491 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 568 (658)
... -+-|..+-..++..|+-.|-+..|.+++..+.-+.+. |...| .+..-+...|++..+...++...+. ...+ .
T Consensus 466 lt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 443 2335556667888888889999999999888777666 33333 3344555667888777777766552 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQARELM---KVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.+-.. |....+.|.+.+..++. +++...--.--..+-+..++.++..++.++-...++.|.
T Consensus 543 E~~ey-I~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEY-IALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHH-HHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 12222 22333456665554443 222211001112233456666777788887777777776
No 112
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=9.8e-06 Score=77.72 Aligned_cols=218 Identities=7% Similarity=-0.022 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHH
Q 006154 408 GCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNI--EGAV 484 (658)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~ 484 (658)
+..++|+.+..++++..+. +..+|+.-...+...| ++++++..++++.+...+ +...|+.....+.+.|+. +++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 3344444444444443322 2333333333333333 344455555444443222 222333332223333331 3444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc---CCH----HHHHHHHH
Q 006154 485 QVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---GKI----AEAFAMFS 557 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 557 (658)
.+++++.+...+ +..+|......+...|+++++.+.++++.+.++.+..+|+.....+.+. |.. ++++....
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 555555544322 4444544444445555555555555555555555555555544444332 111 23444444
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKF----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC---------------- 617 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------- 617 (658)
+++... +-|...|+.+...+... ++..+|.+.+.+....+ ..+......|+..|+...
T Consensus 208 ~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 208 DAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 444432 23444455555555442 22344555555544432 123444455555554321
Q ss_pred --ChHHHHHHHHHHH
Q 006154 618 --SPEEVIELHDDMV 630 (658)
Q Consensus 618 --~~~~A~~~~~~m~ 630 (658)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 3467888888773
No 113
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=1e-05 Score=77.60 Aligned_cols=182 Identities=8% Similarity=0.006 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL--AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVY 487 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 487 (658)
+++++..++++.+.+++ +..+|+.....+.+.|+. +++..+++++++... -+...|+.....+...|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444444444333 333333333333333331 344444545444322 14444444444444555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc----CCHHHHHHHH
Q 006154 488 ENMKKVEKKPNLVIYNSIINGLCKD---AS----LDAAKSLLQASQRIGLLDAITYNTLINGYFIN----GKIAEAFAMF 556 (658)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 556 (658)
+++++.++. +...|+.....+.+. |. .++......++....|.+..+|+.+...+... ++..+|...+
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 555554333 333333333333222 11 23455555666666666666666666666552 2334566666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 006154 557 SEMRNVGIAVNKVGYNILINFLCKFG------------------CYQQARELMKVMI 595 (658)
Q Consensus 557 ~~~~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 595 (658)
.+....+ +.+......|++.|+... ..++|.+++..+.
T Consensus 245 ~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6655532 234555666666666432 2356777777663
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=8.4e-06 Score=82.15 Aligned_cols=304 Identities=15% Similarity=0.116 Sum_probs=218.3
Q ss_pred HHHHHHHhcccCCCCCCHHhHHHHHHHHHcC---CCchHHHHHHHHHHhcCCCChHHHHHHHHhhc-cCCCCCHHHHHHH
Q 006154 77 ALEFYTWVGENNRFSHSLESSCAIVHLLVNW---RRFDDALLLMGNLMSANSVSPLEFLEGLLDSY-EICKATPAVFDAL 152 (658)
Q Consensus 77 al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l 152 (658)
-.-+|.-+..+.+..-...+...+.+.+... +..+++....+.+.+.-......+...+.-.+ +..||-...-..+
T Consensus 325 l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~l 404 (777)
T KOG1128|consen 325 LEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLL 404 (777)
T ss_pred HHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHH
Confidence 3445555555554444455556666666654 45555655555554432222223333333222 2456666677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
...+...|-...|..+|+++ ..|..++..|...|+..+|..+..+.++. +|+...|..+.+......-+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 89999999999999999965 45778888999999999999999998884 78999999999988777778
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIR 312 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 312 (658)
++|.++.+..... +-..+.....+.++++++.+.|+.. +.-. +....+|-.+..+..+.++++.|.+.|
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~s--l~~n--plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERS--LEIN--PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHH--hhcC--ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 9999998875432 2223333334579999999999984 2222 224668888888899999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 006154 313 YAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKH-IC 391 (658)
Q Consensus 313 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~ 391 (658)
....... +.+...||.+-.+|.+.|+-.+|...+.+..+-+ .-+...|-..+....+.|.+++|.+.+.++.... ..
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9998664 5567889999999999999999999999999886 3356677777788899999999999999887542 11
Q ss_pred CChhhHHHHHHHH
Q 006154 392 PDHFTYSILTKGL 404 (658)
Q Consensus 392 ~~~~~~~~l~~~~ 404 (658)
.|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 2444444444443
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=1.4e-05 Score=86.12 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=160.6
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcc---CHHhHHHHHHHHHhcCCHhHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK-GHSV---SIHAWNNFLSHLVKLNEIGRFWKLY 204 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~ 204 (658)
.+=|+.++. ..|.+...|...+......++.+.|++++++++.. ++.- -...|-++++.-...|.-+...++|
T Consensus 1444 aeDferlvr---ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1444 AEDFERLVR---SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred HHHHHHHHh---cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344555554 45667788888888888888888888888888763 1111 2346777777777777777888888
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC
Q 006154 205 KEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 205 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
+++.+.. .....|..|...|.+.+++++|.++++.|.+. +.-....|...+..+.+..+-++|..++.+. +....
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA--L~~lP 1595 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA--LKSLP 1595 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH--Hhhcc
Confidence 8888752 22446777888888888888888888888765 3335567778888888888888888888874 22110
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH--hHH
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN--VVY 362 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~ 362 (658)
-.-........+..-.+.|+.+.+..+|+...... |.....|+..++.-.+.|+.+.++.+|+++...++.|-. ..|
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 01123344455556667788888888888877653 556777888888888888888888888888877665432 234
Q ss_pred HHHHHHHHhcCCH
Q 006154 363 NSTIHWLFAEGDV 375 (658)
Q Consensus 363 ~~ll~~~~~~g~~ 375 (658)
...+..=-+.|+-
T Consensus 1675 KkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHhcCch
Confidence 4444433333443
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=1.6e-05 Score=85.74 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=154.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEE-HMVG---DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG 468 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (658)
....|-..+......++.++|.++.++++.. ++.- -...|.++++.....|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3445566666667777777777777777654 1111 1235667777777777777777788777764 11234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHc
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFIN 546 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 546 (658)
.|...|.+.++.++|.++++.|.+. +.-....|...++.+.++.+-++|..+++++.+.-|. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777788888888888888888775 3346677778888888888888888888887777666 556666667777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCCChH
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV--TYTTLVTRFSKNCSPE 620 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~ 620 (658)
|+.+++..+|+...... +-....|+..++.-.++|+.+.+..+|++.+..++.|... .|..++..=-..|+-+
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 88888888888777652 4456678888888888888888888888888777666533 4455554444445543
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=7.3e-06 Score=73.09 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCC--HHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL-CKFGC--YQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~ 588 (658)
.++.+++...++...+..+.+...|..++..|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3444555555555555555555566666666666666666666666555542 22444455555542 44444 35566
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+++++..+.+ +-+...+..+...+.+.|++++|+..++++++.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666655542 114445555555555566666666666665553
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=1.5e-05 Score=84.46 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=166.0
Q ss_pred ChhhHHHHHHHHHhcCChHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQA-FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
++.....+=.+....|..++| .+++.+..+ ++..........+++.-+..... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 444444444555666766665 334444433 22222222333333332223332 2445688888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
....+.|.+++|..+++...+..+. +......+...+.+.+++++|....++.....+.+......+..++.+.|++++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999999985322 455677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|..+|+++...+ +.+..++..+..++...|+.++|...|++..+. ..|....|+.++. +...-..+++++.-
T Consensus 173 A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 244 (694)
T PRK15179 173 ADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCc
Confidence 999999999843 345788899999999999999999999999875 3455566665543 34444556666544
Q ss_pred C----CCCCCHHHHHHHHHHhhcCCC
Q 006154 632 S----GVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 632 ~----g~~p~~~~~~~l~~~~~~~g~ 653 (658)
. |.+....+....|.-+.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 245 EGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred ccccCCCceeeeeHHHHHHHHhhcCc
Confidence 4 333444556666666655443
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=8.1e-06 Score=76.12 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=121.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI-PD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL--VIYN 503 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 503 (658)
....+..+...+...|++++|...++++...... |. ...+..+..++.+.|++++|+..++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556677777788888888888888887765321 11 235566677788888888888888888775332111 1344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 504 SIINGLCKD--------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 504 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
.+..++... |+.+.|.+.++.+....+.+...+..+...... ... .. .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~------~~--------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR------LA--------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH------HH--------HHHHHHH
Confidence 444455443 667778888888877776654444333221110 000 00 0112556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 576 NFLCKFGCYQQARELMKVMILHGI-IP-DYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
..+.+.|++++|+..+++.++... .| ....+..+..++.+.|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778899999999999999887521 12 3467788888999999999999998888764
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=5.7e-08 Score=57.76 Aligned_cols=32 Identities=44% Similarity=0.703 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 598 GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 598 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
|+.||..||+++|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444455555555555555555555444444
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=5.7e-08 Score=57.77 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=3.5e-05 Score=81.73 Aligned_cols=159 Identities=8% Similarity=-0.057 Sum_probs=119.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006154 427 GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSI 505 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 505 (658)
.+...+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.....+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 36778888888888889999999998888875 344 455666778888888999999888888886443 66677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
..++.+.|++++|..+|+++...++.+..++..+..++...|+.++|...|++..+.. .|-...|+.++ +++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHH
Confidence 8888888999999999998888777788888888888888899999999888887752 34445444432 2334
Q ss_pred HHHHHHHHHH
Q 006154 586 QARELMKVMI 595 (658)
Q Consensus 586 ~A~~~~~~~~ 595 (658)
.-..+++++.
T Consensus 234 ~~~~~~~~~~ 243 (694)
T PRK15179 234 ADLAALRRLG 243 (694)
T ss_pred HHHHHHHHcC
Confidence 4444555544
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.1e-05 Score=71.97 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=87.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH-HHcCC--HHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY-FINGK--IAEAF 553 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~ 553 (658)
.++.++++..++...+..+ .+...|..+...|...|++++|...++++.+..+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5566667767766666533 36677777777777777888888777777777777777777777753 55565 47777
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
+++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+. .+|+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 7777777754 335666777777777778888888888877765 34443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=2e-05 Score=69.94 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|+..+.+.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 34445555556666655555554332 1224444555666666777777777777776664 345667777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
|+++.|..-+.+..+..+.++..++.+...|.-.|+.+.|..++......+ .-|...-..+.-+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777777766677777777777777777777777776666643 2245555566666667777777766654
Q ss_pred HH
Q 006154 593 VM 594 (658)
Q Consensus 593 ~~ 594 (658)
+-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=2e-05 Score=73.48 Aligned_cols=188 Identities=12% Similarity=-0.042 Sum_probs=131.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI--ITY 467 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~ 467 (658)
.....+..+...+...|++++|...++++....+.. ...++..+...+.+.|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 355677778888999999999999999998875431 1246778889999999999999999999886432121 234
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 468 GTLIDGYCKG--------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 468 ~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
..+..++... |++++|.+.++.+.+..+. +...+..+..... .... .......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~-------------~~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH-------------HHHHHHHH
Confidence 4455555544 7889999999999875332 2222222211110 0000 01112356
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGI--AVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...|.+.|++++|...+++..+... +.....+..++.++.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778899999999999999987521 123467889999999999999999999888764
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6e-05 Score=66.84 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+.+|.-+|+++.++.++++.+.+..+.++...|++++|..++++.+..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444444555554444444443
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=3.9e-05 Score=68.11 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=134.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
..+-..+...|+-+....+....... ..-|.......+......|++..|...+.++....++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44556677788888888887776543 33366677778899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
+.++|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999853 3346678899999999999999999999999864 3367777788888999999999998876
Q ss_pred HHHH
Q 006154 628 DMVL 631 (658)
Q Consensus 628 ~m~~ 631 (658)
.-+.
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00011 Score=65.19 Aligned_cols=252 Identities=17% Similarity=0.144 Sum_probs=145.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
++-+.-.|++..++..-....... -++..-..+-++|...|++..... ++... -.|.......+...+...++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchh
Confidence 444555677776666555544331 344444556667777776644332 22222 133333444333333334444
Q ss_pred HHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHH
Q 006154 233 EEAL-SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEI 311 (658)
Q Consensus 233 ~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 311 (658)
++-+ ++.+.+......-+......-...|+..|++++|++.++.. . +......=...+.+..+++-|++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---E------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---c------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44455554433333333334445677888888888887761 1 233344444566777888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 312 RYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMID 387 (658)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 387 (658)
+++|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++....
T Consensus 160 lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 160 LKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888653 45566666666654 45677788888887653 456777777777777778888888888888777
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHcC
Q 006154 388 KHICPDHFTYSILTKGLCRNGCVKQ-AFKLHNQVLEEH 424 (658)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 424 (658)
+... ++.+...++-+-...|...+ ..+.+.++....
T Consensus 236 kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 236 KDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred ccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 6544 45555555544444444433 344555555443
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=1.5e-05 Score=67.20 Aligned_cols=95 Identities=11% Similarity=-0.069 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+......+...|++++|...|+.+....|.+...|..++.++...|++++|...|++..... +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33445555566666666666666666666666666666666666666666666666666543 33455566666666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 006154 582 GCYQQARELMKVMILH 597 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~ 597 (658)
|++++|+..+++.+..
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666653
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.6e-05 Score=66.90 Aligned_cols=108 Identities=9% Similarity=-0.058 Sum_probs=83.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
.++++.++. ++..+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...|+.+....
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 222344566677788888888888888887643 367788888888888888888888888888888
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+.++..+..++.++...|++++|...|+...+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888889999999888888874
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=0.00011 Score=78.71 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
.+..+..+|-+.|+.+++...++++++..+. |+.+.|.+...|... ++++|.+++.+.... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4444444455555555555555555554422 444455555555444 555555444444332 22
Q ss_pred hcCChHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH
Q 006154 476 KGGNIEGAVQVYENMKKVE-------------------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY 536 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 536 (658)
..+++..+.++|.++.... ..--..++-.+...|...++++++..+++.+.+..+.|..+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 2334444444444443321 111223333444455555666666666666666666555555
Q ss_pred HHHHHHHH
Q 006154 537 NTLINGYF 544 (658)
Q Consensus 537 ~~l~~~~~ 544 (658)
..++.+|.
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 55555554
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=0.00024 Score=76.28 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=115.7
Q ss_pred CCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
...+++..++.++...+++++|..+++..++ ..|.....|..++..+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK------------------EHKKSISALYISGILSLSRRPLNDSNLL--N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------hCCcceehHHHHHHHHHhhcchhhhhhh--h
Confidence 3467788899999999999999999997776 4566666777777777777776665555 2
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNV 251 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 251 (658)
++.......++..+..++..|... .-+...+..+..+|-+.|+.++|..+++++++.... |.
T Consensus 89 ---------------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~ 150 (906)
T PRK14720 89 ---------------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NP 150 (906)
T ss_pred ---------------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cH
Confidence 223333334444444444455543 234456777777788888888888888888877633 67
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
.+.|.+...|... ++++|++++.+. . ..+...+++..+.+++.++...
T Consensus 151 ~aLNn~AY~~ae~-dL~KA~~m~~KA---V---------------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 151 EIVKKLATSYEEE-DKEKAITYLKKA---I---------------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHH---H---------------HHHHhhhcchHHHHHHHHHHhc
Confidence 7788888888777 888888877772 1 2245556666777777766655
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.2e-05 Score=67.45 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
....+...+...|++++|...++.+...++.+...+..+...+...|++++|...+++..+.+ +.+...+..+..++..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMIL 596 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~ 596 (658)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00017 Score=69.94 Aligned_cols=138 Identities=16% Similarity=0.083 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 517 (658)
+...|++++|+..++.++.. .+-|........+.+.+.++.++|.+.++++... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666665554 2224444455556666667777777777766664 233 4455556666667777777
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|..+++......+.++..|..|..+|...|+..++..-. ...|...|+++.|+..+....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 777777766666667777777777777776666554432 23344566666666666666654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.0002 Score=69.39 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
.-|..-+. +...|++++|+..++.+... .+-|+.......+.+.+.++.++|.+.++++....|......-.+..+|.
T Consensus 308 a~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 33444443 44679999999999999886 34477777888889999999999999999999999988889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIE 624 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 624 (658)
+.|++.+|+.+++...... +.|+..|..|.++|...|+..+|..... ..+.-.|++++|+.
T Consensus 386 ~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~ 446 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAII 446 (484)
T ss_pred hcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHH
Confidence 9999999999999998864 6789999999999999999988865433 34566799999999
Q ss_pred HHHHHHHC--CCCCCHHHHHHHHHHhh
Q 006154 625 LHDDMVLS--GVSPDNQTYNAIISPLL 649 (658)
Q Consensus 625 ~~~~m~~~--g~~p~~~~~~~l~~~~~ 649 (658)
++....+. .-.|+..-+...|....
T Consensus 447 ~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 447 FLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 99998886 23445555555555543
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00048 Score=60.83 Aligned_cols=163 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
|..++-+....|+.+.|...++.+..+- +-+...-..-...+-..|++++|+++|+.+.+.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444555556666666666666666552 2122222211222344567777777777776654 3355566555555556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 588 (658)
.|+.-+|.+-+....+..+.|..+|.-+...|...|++++|.-.++++.-.. |-++..+..+.+.+.-.| +..-|.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666677777777766666677777777777777777777777777766532 223334444555443333 455666
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
+++.+.++.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 666666653
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=2.3e-05 Score=65.73 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=74.6
Q ss_pred HHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 521 LLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
.++.+....+.+......++..+...|++++|...++.+...+ +.+...+..+..++.+.|++++|...+++....+ +
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3455555555555666666666777777777777777766643 3355666666777777777777777777766542 3
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 601 PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 601 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
.+...+..+...+...|++++|...+++..+ ..|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 3455566666667777777777777777766 345554433
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00071 Score=59.79 Aligned_cols=151 Identities=19% Similarity=0.183 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHH---CC-CCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 339 SSEEALRLCDEMVK---RG-LMPNNVV-YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQA 413 (658)
Q Consensus 339 ~~~~A~~~~~~~~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (658)
+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555432 12 2333332 2333344445556666666666655542 11222222222223345555666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 414 FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
+++++.+++.++. |..++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 6666666555432 4444444444444445544555555544443 334555555555555555555555555555544
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00012 Score=62.02 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=75.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 585 (658)
..++...+...++.+....+.+ ....-.+...+...|++++|...|+.+......|+ ......|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3666777777777777766654 33444456677777888888888877777542222 123345667777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 586 QARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 586 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
+|+..++..... ......+......+.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888877664332 223445556667777888888888777654
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=0.00023 Score=69.83 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|+..+...++++.|..+++++.+.. |+ ....++..+...++..+|++++++..+.. +-+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667888999999999988874 44 34456777777888889999998888753 3366677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
.++++.|..+.+++.+..|.+..+|..|+.+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999899999999999999999999998888764
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00023 Score=60.23 Aligned_cols=89 Identities=12% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
.+...+...|++++|...|+.+......++ ......+...+...|++++|...++..... ......+......+.+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHH
Confidence 344555555555555555555555432221 122333444445555555555555442221 1222334444445555
Q ss_pred cCCHHHHHHHHHH
Q 006154 229 ECKLEEALSLYYR 241 (658)
Q Consensus 229 ~g~~~~A~~~~~~ 241 (658)
.|+.++|+..|+.
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555443
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00018 Score=70.56 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
....|+..+...++++.|+.+++++.+.. |+ ....++..+...++-.+|.+++++.....+.+...+..-+..+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34456667777899999999999999864 44 444577888888899999999999999888899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.++++.|+.+.+++.+. .|+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999995 455 5699999999999999999999887655
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.5e-05 Score=48.28 Aligned_cols=31 Identities=52% Similarity=0.755 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
|++++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.7e-05 Score=47.99 Aligned_cols=35 Identities=40% Similarity=0.645 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 145
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0059 Score=51.36 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHH
Q 006154 461 IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNT 538 (658)
Q Consensus 461 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 538 (658)
.|+...--.|..++...|+..+|...|++...--+--|......+.++....+++.+|...++++.+..+. .+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777888888888888888888776555667777778888888888888888888888887765 6777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+...|...|++..|+.-|+..... -|+...-......+.+.|+.++|..-+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 788888888888888888888873 4555554455566677777776655544443
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0093 Score=56.83 Aligned_cols=285 Identities=18% Similarity=0.066 Sum_probs=133.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC-hhhHHHHHHHHHhc
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN-SVTHNCIINGFCKL 302 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 302 (658)
..+.+..++.+|+..+...++.++. +...|..-...+...|++++|..-.+... . +.|. ...+.-.-+++...
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r--~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV---R--LKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe---e--cCCCccccccchhhhhhhh
Confidence 3556667777788888877776443 45566666666667777777766665421 1 1111 22333333444444
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCcHhHHHHH-HHHHHhcCCHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGL-MPNNVVYNST-IHWLFAEGDVEGALF 380 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l-l~~~~~~g~~~~a~~ 380 (658)
++..+|.+.++. ...| ....++..++....... .|...+|..+ ..++.-.|+.++|..
T Consensus 131 ~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 131 SDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 444455444441 1111 11122222222221111 1333334333 234455677777776
Q ss_pred HHHHHHhCCCCCChhhHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 381 VLSDMIDKHICPDHFTYSILTK--GLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
.-...++... ...+..+++ ++...++.+.+...|++.+..++. -.. .+..-.-.+.+..+...
T Consensus 191 ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~----------sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 191 EAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQK----------SKSASMMPKKLEVKKER 255 (486)
T ss_pred HHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChh--hhh----------HHhHhhhHHHHHHHHhh
Confidence 6655555321 122233333 233456677777777777665432 111 01111111111222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhh
Q 006154 459 GLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE---KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAIT 535 (658)
Q Consensus 459 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 535 (658)
..-..+.|++..|.+.|.+.+... ..|+...|.....+..+.|+.++|..--+...+..+.-...
T Consensus 256 ------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 256 ------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred ------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 112334555555555555555431 22333344444444555566666655555555554433444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
|..-..++...+++++|.+-+++..+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555566666666655544
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.89 E-value=2.6e-05 Score=46.78 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444443
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00075 Score=55.93 Aligned_cols=96 Identities=9% Similarity=-0.071 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
..-.+..-+...|++++|.++|+.+....+.+...|-.|..++-..|++++|+..|....... +.|+..+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344455566778888888888888888888888888888888888888888888888888765 3567777888888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888887754
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.8e-05 Score=46.05 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00087 Score=54.52 Aligned_cols=94 Identities=11% Similarity=-0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIA--VNKVGYNILINFLCKFGCYQQARELMKVMILHGII--PDYVTYTTLVTRF 613 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~ 613 (658)
.++..+.+.|++++|...|+++...... .....+..++.++.+.|++++|.+.++.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444444444444444432100 00122333444444444444444444444432110 0122333344444
Q ss_pred HhCCChHHHHHHHHHHHH
Q 006154 614 SKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~ 631 (658)
.+.|++++|...++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444444444444444444
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.80 E-value=0.0015 Score=67.31 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=34.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++.+|..+.-.+...|++++|...++++... .|+...|..++..+...|+.++|.+.++++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555544444555555555555555553 24555555555555555555555555555554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00052 Score=53.00 Aligned_cols=91 Identities=22% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC 617 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 617 (658)
.++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444444555555555555554431 1222344444445555555555555555544432 122234444444555555
Q ss_pred ChHHHHHHHHHHH
Q 006154 618 SPEEVIELHDDMV 630 (658)
Q Consensus 618 ~~~~A~~~~~~m~ 630 (658)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555444
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.00058 Score=67.33 Aligned_cols=124 Identities=14% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 211 GYVENVNTFNLVIYALCKECKLEEALSLYYRMLKS--GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 211 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|...|..+.++.++.. -...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n---~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN---RLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC---hhhcccCCC
Confidence 34556667777777777777778888887777654 2222334556888888888888888888888 778888888
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
..+++.+++.+.+.|++..|.++...|...+...+..|+..-+.++.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888887776566666666656555554
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.00079 Score=54.78 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHS--VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
.++..+..++.+.|++++|.+.|+.+....+. ....++..+..++.+.|++++|...++++.+.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444455555555555555555554443211 11233444444444444555555555444443
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00058 Score=67.32 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYN 572 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 572 (658)
+.+......+++.+....+++.+..++-+....... .+.+..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555556666666666666666666665554221 34444566777777777777777777666677777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 573 ILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 573 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
.|++.+.+.|++..|.++.-.|...+.-.+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777776666655555555555544444444
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00081 Score=66.36 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|...++++.+..+.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++|+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555555555555555555555555555555555555555555555555532 223444555555555555555555
Q ss_pred HHHHHHHH
Q 006154 589 ELMKVMIL 596 (658)
Q Consensus 589 ~~~~~~~~ 596 (658)
..|++++.
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00061 Score=52.60 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|.+.+++..... +.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355677788889999999999999999888887889999999999999999999999998864 3455678889999999
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|++++|...+.+..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999988753
No 158
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.74 E-value=0.05 Score=52.78 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=80.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006154 98 CAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH 177 (658)
Q Consensus 98 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 177 (658)
+.-+-+|.+.+++.+|.++|.++.+..-.++...-++ ..-+.++++|... +.+.-...+....+.-
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeE------------vl~grilnAffl~-nld~Me~~l~~l~~~~- 75 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEE------------VLGGRILNAFFLN-NLDLMEKQLMELRQQF- 75 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHH------------HHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-
Confidence 3345567778888888888887766422221111111 1123345555433 3444444444444321
Q ss_pred ccCHHhHHHHHH--HHHhcCCHhHHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 178 SVSIHAWNNFLS--HLVKLNEIGRFWKLYKEMVSC--GYVE------------NVNTFNLVIYALCKECKLEEALSLYYR 241 (658)
Q Consensus 178 ~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~--g~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 241 (658)
| ...|-.+.. ...+.+.+..|.+.+..-... +..+ |...-+..+..+...|++.+++.++++
T Consensus 76 -~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~ 153 (549)
T PF07079_consen 76 -G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNR 153 (549)
T ss_pred -C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 1 122333333 234666777777666555443 2211 222334556677788888888888887
Q ss_pred HHhC----CCCCChhhHHHHHHHHHh
Q 006154 242 MLKS----GIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 242 m~~~----~~~p~~~~~~~li~~~~~ 263 (658)
|... ...-+..+|+.++-.+++
T Consensus 154 i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 154 IIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 7643 334677788876665554
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00054 Score=65.09 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777777888888888887542 2244445444444 22355666688888888877777788888888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...|+.+.|..+|++.... +.++. ..|...++.-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888764 33222 36777777777778888888877777764
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0025 Score=55.83 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF 577 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 577 (658)
.+..+...+...|++++|...++++....+. ....+..++..+.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444444555555666666555555544332 13455555555555555555555555555532 1223344444555
Q ss_pred HHhcCCHHH
Q 006154 578 LCKFGCYQQ 586 (658)
Q Consensus 578 ~~~~g~~~~ 586 (658)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555554333
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00047 Score=62.70 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
.-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|.+-.+.....++....+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3466789999999999999986433 777888888999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHcCCCCCH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFL-CKFGCYQ---QARELMKVMILHGIIPDY 603 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~g~~p~~ 603 (658)
|++.|++.++ +.|+..+|..=+... .+.+... .+..-++.....|..|+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999988 567777765433322 2233322 344444444444444553
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.00094 Score=55.35 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=57.2
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.+....++..+...|++++|.++++.+.. ..|.+...|..|..++-..|++++|+..|....
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~------------------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI------------------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555556666666666666665554 345555566666666666666666666666666
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..++ -++.++-.+...+...|+.+.|.+.|+..+.
T Consensus 97 ~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 97 QIKI-DAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred hcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6543 3555555566666666666666666665554
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0015 Score=64.50 Aligned_cols=89 Identities=12% Similarity=0.039 Sum_probs=58.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+...|++++|++.|+++++.... +...|..+..++...|++++|...++++....+.+...|..++.+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 344566667777777666665332 4556666666666677777777777777666666666666666777777777777
Q ss_pred HHHHHHHHHC
Q 006154 553 FAMFSEMRNV 562 (658)
Q Consensus 553 ~~~~~~~~~~ 562 (658)
+..|++.++.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 7777776663
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.00083 Score=51.41 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=39.3
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 190 HLVKLNEIGRFWKLYKEMVSCGY-VENVNTFNLVIYALCKEC--------KLEEALSLYYRMLKSGIWPNVVCFNMIINE 260 (658)
Q Consensus 190 ~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 260 (658)
.+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555555 455555555555444321 233455566666666666666666666655
Q ss_pred HH
Q 006154 261 AC 262 (658)
Q Consensus 261 ~~ 262 (658)
+.
T Consensus 114 Ll 115 (120)
T PF08579_consen 114 LL 115 (120)
T ss_pred HH
Confidence 43
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0008 Score=61.27 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=95.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 437 NYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 437 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
+-+.+.+++.+|+..|.+.++... -|.+-|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 347788899999999999988633 36777888888999999999999988888875322 4568899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCh
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIA---EAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 568 (658)
+|.+.|++..+..|.+......|-.+--+.+... .+..-++.....|..|+.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999999999998887766666655544444443 333444444444544443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.63 E-value=0.00012 Score=55.13 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
.|+++.|..+++++.+..+. +...+..++.+|.+.|++++|..++++ .+.+. .+....-.++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666665553 333444456666666666666666665 22111 122333344566666666666666
Q ss_pred HHHH
Q 006154 590 LMKV 593 (658)
Q Consensus 590 ~~~~ 593 (658)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.067 Score=51.24 Aligned_cols=277 Identities=12% Similarity=0.009 Sum_probs=144.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
....+.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-++.. +-....+...-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 345667777888888888888877544 45566666666667777777766665555431 1112222233333333344
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH-HHHHHhcCChHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI-INGFCKLGRVEFAEE 310 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 310 (658)
..+|.+.++ +...| ....++..++.. .....-+|.-.+|..+ ..++.-.|+.++|..
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~--~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKL--APSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcc--cccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 444444443 11111 112223333331 1111112333333333 245566788888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCcHhH-------------HHHHHHHHHhcCCH
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDG--YARGGSSEEALRLCDEMVKRGLMPNNVV-------------YNSTIHWLFAEGDV 375 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~-------------~~~ll~~~~~~g~~ 375 (658)
+--.+.+.. ....+..++++ +.-.++.+.|...|++.+..+ |+... +..-.+-..+.|.+
T Consensus 191 ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 191 EAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 777777653 23334444443 334677888888888877663 33221 11122334566777
Q ss_pred HHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 376 EGALFVLSDMIDKH---ICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 376 ~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
..|.+.|.+.+... ..|+...|........+.|+.++|+.--+...+.+.. -+..|..-..++.-.++|++|.+-+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766542 3344444555555556666777776666666554211 1122222333444556666666666
Q ss_pred HHHHHC
Q 006154 453 SSMIVR 458 (658)
Q Consensus 453 ~~~~~~ 458 (658)
+...+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 665543
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.023 Score=52.60 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNV--GIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
+...|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..++|.+....+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555542 11222333445555555555555555544433
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.0073 Score=57.69 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
.+.|...+..+...|++++|...+.+...- ...+ .........|.....+|.+ +++++|.+.+++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~--------~~~~----~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADC--------YEKL----GDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH--------HHHT----T-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH--------HHHc----CCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Confidence 344566666677777777777777665431 1110 0000011233333334333 36666666665554
Q ss_pred h----CCCc-cCHHhHHHHHHHHHhc-CCHhHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 174 V----KGHS-VSIHAWNNFLSHLVKL-NEIGRFWKLYKEMVSC----GYVE-NVNTFNLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 174 ~----~g~~-~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
+ .|-. .-...+..+...|... |+++.|.+.|++.... |.+. -..++..+...+.+.|++++|.++|+++
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 1211 0122344444555555 6666666666665532 1000 1234445555666666666666666666
Q ss_pred HhCCCCC-----Chh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 243 LKSGIWP-----NVV-CFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 243 ~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
....... ++. .+...+-++...||...|...+++
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432211 111 122233344455666666666666
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0021 Score=56.11 Aligned_cols=95 Identities=15% Similarity=-0.024 Sum_probs=55.0
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
...|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666666777777777777776542121 12356666777777777777777777766531 22233444444
Q ss_pred HHHH-------hCCChHHHHHHHHH
Q 006154 611 TRFS-------KNCSPEEVIELHDD 628 (658)
Q Consensus 611 ~~~~-------~~g~~~~A~~~~~~ 628 (658)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 66666655444443
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0021 Score=61.09 Aligned_cols=145 Identities=9% Similarity=0.094 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 430 YSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
.+|..++...-+.+..+.|..+|.+..+.+. ..+.....+++. +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888999999999999999999986532 233333333333 33357777799999999886 56688888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
+.+.++.+.|..+|++....-+. ....|...+..-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999887554 2468999999999999999999999999884 45555555555544
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.013 Score=55.91 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
.|......|...|++++|.+.|.+..+
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 345556667777888888777776644
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.00019 Score=54.04 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIA-VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIE 624 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 624 (658)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|++++++ ...+. .+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999885421 2445566689999999999999999988 32211 233444556788999999999999
Q ss_pred HHHH
Q 006154 625 LHDD 628 (658)
Q Consensus 625 ~~~~ 628 (658)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0051 Score=63.53 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc--------CCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFIN--------GKIAEAFAMFSEMRNV-GIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
...|..+|+++.+..|.....|..+..++... ++...+.+..++.... ..+.+...|..+.-.....|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555444444443333221 1223333444433332 12334455666655555667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006154 586 QARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTY 641 (658)
Q Consensus 586 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 641 (658)
+|...++++++. .|+...|..+...+...|+.++|.+.+++... +.|...+|
T Consensus 438 ~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 438 EAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 777777777764 45666777777777777777777777777766 45554443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0051 Score=49.21 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGIIPD----YVTYTTLVT 611 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~ 611 (658)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.... .|+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 345556667777777777777777665443 334556666777777777777777776654 122 112222333
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 612 RFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++...|+.++|++.+-.... ++...|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56667777777777655543 23335555555543
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0052 Score=53.77 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++....+.+...+..++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666666666666666665432221 245666666667777777777777777776666666666666777
Q ss_pred HHcCCHHHHHH
Q 006154 544 FINGKIAEAFA 554 (658)
Q Consensus 544 ~~~g~~~~A~~ 554 (658)
...|+...+..
T Consensus 117 ~~~g~~~~a~~ 127 (172)
T PRK02603 117 HKRGEKAEEAG 127 (172)
T ss_pred HHcCChHhHhh
Confidence 66666544443
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00011 Score=42.88 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444443
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0018 Score=49.62 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMILHGI-IPDYVTYTTLVTRFSKNC--------SPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
.|..+...|++...--+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666654422 233566778888888888888888888
Q ss_pred HHHhhc
Q 006154 645 ISPLLG 650 (658)
Q Consensus 645 ~~~~~~ 650 (658)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 887765
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.0017 Score=61.49 Aligned_cols=132 Identities=15% Similarity=0.063 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCChH
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQ----RIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRN----VGI-AVNKV 569 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 569 (658)
.|..|.+.|.-.|+++.|....+.-. +-|.. ...++..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555666666788888887765432 33332 456788899999999999999998887643 221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMIL----H-GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+.-+|.+.|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 455788888888889999988876432 1 12234667888999999999999998887776553
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.016 Score=58.26 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
..+.+-+-.|...|.+++|.++-- .-....-|..|...-...=+++-|++.|.+....
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl---------------- 614 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL---------------- 614 (1081)
T ss_pred ccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc----------------
Confidence 344455566777777777655422 2222333444444333333444444444333321
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.+-+.+.-++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 12233444567777777677654 44556677888888888876
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.002 Score=56.15 Aligned_cols=78 Identities=14% Similarity=-0.014 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
+..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.+....+.....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3344444445555555555555554432211 12244445555555555555555555555544444444444444444
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.006 Score=56.09 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 595 (658)
..-++.-...+|.|...|-.|...|...|+.+.|..-|.+..+.. ++|...+..+..++.... ...++..+|++++
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333444555566677777777777777777777777777776642 445555666665554332 3456777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 596 LHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 596 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
... +-|.....-|...+...|++.+|...++.|++.
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 642 224445555555677777777777777777764
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00012 Score=42.61 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGV 634 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 634 (658)
.+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.033 Score=51.54 Aligned_cols=175 Identities=13% Similarity=0.005 Sum_probs=98.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTY---SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK- 441 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 441 (658)
...+...|++++|.+.|+++....+.+ .... -.++.++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334455666666666666666543322 1221 23445566667777777777777666544333333333333321
Q ss_pred -c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 006154 442 -S---------------NN---LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY 502 (658)
Q Consensus 442 -~---------------~~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 502 (658)
. .+ ..+|...|+++++. |-...-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 12344444444443 22223334444433333221 00111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
..+..-|.+.|.+..|..-++.+.+.-|. ...+...++.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24566688889999999999999888776 56677788889999999999888776554
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.041 Score=46.51 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=77.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhH
Q 006154 213 VENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTH 292 (658)
Q Consensus 213 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 292 (658)
.|++.---.|..++.+.|+..+|...|++....-+--|......+..+....+++.+|...++++.+....+-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555555566667777777777777777766543444555556666666667777777777777522222222333 34
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
..+...+...|+..+|+..|+..... -|+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45556667777777777777777655 444444444445566666665554433
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.011 Score=47.23 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=21.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++.....
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444433322 112223333344444444444444444433
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.21 Score=51.18 Aligned_cols=204 Identities=13% Similarity=0.040 Sum_probs=109.4
Q ss_pred ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 178 SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-GYV--------ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 178 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
.|.+..|..+...-...-.++.|...|-+.... |++ .+.....+=+.+| -|++++|.++|-+|.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 467778877777666666666666666554432 111 0111111122222 37888888888777654
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL--PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 326 (658)
| ..|..+.+.||+-...++++. -..+.. .-...|+.+...+.....+++|.+.+..-...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 2 345566677888777777764 111111 11445667777777777777777666553311
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
...+.++.+..++++-..+-..+. -|....-.+..++...|.-++|.+.+-+-- .+ ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHH
Confidence 124455555555555444333322 244445556666777777777766553321 11 123344555
Q ss_pred cCChHHHHHHHHH
Q 006154 407 NGCVKQAFKLHNQ 419 (658)
Q Consensus 407 ~g~~~~a~~~~~~ 419 (658)
.+++.+|.++-+.
T Consensus 891 LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 891 LNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666655443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.22 Score=51.03 Aligned_cols=214 Identities=14% Similarity=0.012 Sum_probs=129.4
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
.|-++.+..++......-.++.|+..|-+...-.|. .+...+... .+...-.+=+.+ --|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi---k~vkrl~~i-----~s~~~q~aei~~--~~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI---KLVKRLRTI-----HSKEQQRAEISA--FYGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch---hHHHHhhhh-----hhHHHHhHhHhh--hhcchhHhhhhhh
Confidence 345667777776666666677777666544321111 111222111 011111122222 3489999999998
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG-YVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP 249 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 249 (658)
.+..++ ..+..+.+.|++-.+.++++.--... -..-...|+.+...+.....+++|.++|..-..
T Consensus 759 d~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 759 DADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred ccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 887653 34667778888877766665421100 011145788888888888899999998876432
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
. ...+.++.+..++++-+.+-.. ++.+....-.+.+++.+.|.-++|.+.+-+.. .|. .
T Consensus 825 -~---e~~~ecly~le~f~~LE~la~~--------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----a 883 (1189)
T KOG2041|consen 825 -T---ENQIECLYRLELFGELEVLART--------LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----A 883 (1189)
T ss_pred -h---HhHHHHHHHHHhhhhHHHHHHh--------cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----H
Confidence 1 2356677777777777776666 33366677788889999999988887765432 222 2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 006154 330 LIDGYARGGSSEEALRLCDE 349 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~ 349 (658)
-+..|...+++.+|.++-+.
T Consensus 884 Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777766544
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.015 Score=53.56 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD---ASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
|...|-.|...|...|+.+.|...|....+. ..+++..+..+..++... ....++..+|+++....+.+..+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 6667777777777777777777777776665 233555555555554332 234566777777777777677777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 77777777777777777777764
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.33 E-value=0.032 Score=50.22 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
+++.....+..+...|++++|...|+.+..+ ++..+..+.+...++.++.+.|+++.|...++++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~---------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR---------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666777777888888888888877753 4555666677777888888888888888888888
Q ss_pred HhCCC
Q 006154 173 KVKGH 177 (658)
Q Consensus 173 ~~~g~ 177 (658)
.+.-+
T Consensus 69 i~~yP 73 (203)
T PF13525_consen 69 IKLYP 73 (203)
T ss_dssp HHH-T
T ss_pred HHHCC
Confidence 77533
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.045 Score=49.27 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHIC--PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM 425 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (658)
.+...|++.+|...|+.+....+. -.....-.++.++.+.|+++.|...++..++..+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 344555555555555555543211 1122233444555555666666666655555433
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.30 E-value=0.001 Score=47.04 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=23.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+...|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 12333444444444444444444444444443
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0032 Score=54.85 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=52.9
Q ss_pred ChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHH
Q 006154 288 NSVTHNCIINGFCK-----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG----------------SSEEALRL 346 (658)
Q Consensus 288 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~ 346 (658)
+..+|..+++.|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+.. +-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55566666666653 3667777777888888888888888888887765421 22345555
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 347 CDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 347 ~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
+++|...|+.||..++..+++.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 55555555555555555555555443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.26 E-value=0.0014 Score=47.05 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG-CYQQARELMKVMIL 596 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 596 (658)
+..|..++..+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555532 223444555555555555 45555555555443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0012 Score=47.24 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|++++|.++++.+....|.+..++..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555444555555555555555555555555555544
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.23 Score=48.45 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG-------TLIDGYCK----GGNIEGAVQVYENMKKVEKKP 497 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~~~~~~~~~ 497 (658)
..++..++....+.++..+|.+.+.-+... .|+...-. .+.+..+. .-+...-+.+|+.....++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 356777888888888888888888766553 23322111 12222221 11223334455555544332
Q ss_pred CHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHHcCCCCHhhHHHHHH----HHHH---cCCHHHHHHHHHHHHHCCCCC
Q 006154 498 NLVIYNSII---NGLCKDAS-LDAAKSLLQASQRIGLLDAITYNTLIN----GYFI---NGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 498 ~~~~~~~l~---~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p 566 (658)
......-++ .-+-+.|. -++|..+++.+.+-.+-|...-|.+.. +|.. .....+-+.+-+-+.+.|++|
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 111222222 23445555 788899998888776666555444332 2222 122333344444456677776
Q ss_pred ChHH----HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006154 567 NKVG----YNILINF--LCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQT 640 (658)
Q Consensus 567 ~~~~----~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 640 (658)
-.+. -|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++.. ++|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 5433 3444433 4567888888765555544 789999999999999999999999999876 4667766
Q ss_pred HHHHH
Q 006154 641 YNAII 645 (658)
Q Consensus 641 ~~~l~ 645 (658)
++.-+
T Consensus 528 ~dskv 532 (549)
T PF07079_consen 528 RDSKV 532 (549)
T ss_pred HHHHH
Confidence 66544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.14 Score=46.03 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-----HHHHH
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVI-----YNSII 506 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~l~ 506 (658)
.+.++.++.-.+.+.-....+++.++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444455555555555556666666554444555555666666666666666666665544322222222 22222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+.-.+++..|...+.++...++.++...|.-.-+..-.|+..+|++..+.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566777777777777777767777766666666677777777777777774
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0061 Score=53.17 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHH
Q 006154 143 KATPAVFDALVRACTQI-----GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVN 217 (658)
Q Consensus 143 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 217 (658)
..+..+|..++..|.+. |-++-....+..|.+.|+.-|..+|+.|+..+=+ |.+. |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 34555666666666533 5566666677777777777777777777776543 2221 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 266 (658)
.+.++..-| -.+-+-|++++++|...|+-||..++..++..+++.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 12345678888888888888888888888888866554
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.11 Score=46.73 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=89.4
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH---
Q 006154 182 HAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII--- 258 (658)
Q Consensus 182 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--- 258 (658)
...+.++..+...|.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35567777777788888888888888887666777778888888888888888888888776654344444444333
Q ss_pred --HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 259 --NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 259 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
..|.-.+++..|...+.++..+.. .|...-|.-.-+..-.|+...|.+.++.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~----~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP----RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC----CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 233445666677777766322211 13333343333344456777777777777765 444444443
No 200
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.15 E-value=0.36 Score=49.00 Aligned_cols=186 Identities=12% Similarity=-0.021 Sum_probs=88.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+..+|...+..-...|+.+.+.-++++..-. +..-...|-..+.-....|+.+-|..++....+...+ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 3445666666666667777666666655431 1112222333333333446666666666655544222 2222222222
Q ss_pred HHH-hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH---HHHHHHHCCCCCCh--HHHHHHHH-HHHh
Q 006154 508 GLC-KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA---MFSEMRNVGIAVNK--VGYNILIN-FLCK 580 (658)
Q Consensus 508 ~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~--~~~~~l~~-~~~~ 580 (658)
.+. ..|+++.|..+++.+.+.-+.....-..-+....+.|..+.+.. ++.........+.. ..+.-..+ .+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 222 35577777777777666653333333444445555666666652 22222221111111 11111111 1223
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN 616 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 616 (658)
.++.+.|..++.++.+. .+++...|..++......
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 45666777777777664 455555666666554443
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0019 Score=45.63 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..+.+.|++++|.+.|+++.+..+. +...+..+..++.+.|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544322 444444555555555555555555555443
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0022 Score=45.81 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=22.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555544432 22333444444455555555555555544444
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.11 E-value=0.31 Score=47.47 Aligned_cols=447 Identities=12% Similarity=0.133 Sum_probs=232.1
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
|-+..+|..++.-+...+..++.++.++++.. ..|--+.+|...+..-....+++....+|.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~------------------pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS------------------PFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC------------------CCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 45677888888888889999998888888775 566677889999998888999999999999
Q ss_pred HHHhCCCccCHHhHHHHHHHHHhcCCH------hHHHHHHHHHHh-CCCCcC-HHHHHHHHHHHH---------hcCCHH
Q 006154 171 KLKVKGHSVSIHAWNNFLSHLVKLNEI------GRFWKLYKEMVS-CGYVEN-VNTFNLVIYALC---------KECKLE 233 (658)
Q Consensus 171 ~~~~~g~~~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~~---------~~g~~~ 233 (658)
+.+... .+...|...+..-.+.+.. ....+.|+-.+. .++.|- ...|+..+..+- .+.+.+
T Consensus 101 rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 101 RCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 998874 4577787777766554421 122344444443 334432 334555443321 233455
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHH------HHHHHHHh---cCC----HHHHHHHHHHhcccccCCcC----CChhhHHHH
Q 006154 234 EALSLYYRMLKSGIWPNV-VCFN------MIINEACQ---VGD----LEFALKLFRKMGVMSGDSVL----PNSVTHNCI 295 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~-~~~~------~li~~~~~---~g~----~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l 295 (658)
.....+.+|+...+. +. ..|+ .=++.... .|+ +..|.+.++++..+ ..|.. .+..+++..
T Consensus 179 ~iR~~Y~ral~tP~~-nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nl-t~Gl~v~~~~~~Rt~nK~ 256 (660)
T COG5107 179 KIRNGYMRALQTPMG-NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNL-TRGLSVKNPINLRTANKA 256 (660)
T ss_pred HHHHHHHHHHcCccc-cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH-hccccccCchhhhhhccc
Confidence 666777777654221 11 1111 11111110 111 33455555553111 11111 112222221
Q ss_pred HH-----------HHHhc-----CCh--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 296 IN-----------GFCKL-----GRV--EFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 296 i~-----------~~~~~-----g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
-+ --... |+. ....-++++.... +.-....|----..+...++-+.|+......... .|
T Consensus 257 ~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sp 333 (660)
T COG5107 257 ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SP 333 (660)
T ss_pred cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CC
Confidence 11 00000 000 0000011111100 0111111111112223344555555444332221 12
Q ss_pred cHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHH
Q 006154 358 NNVVYNS-TIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR---NGCVKQAFKLHNQVLEEHMVGDAYSYN 433 (658)
Q Consensus 358 ~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (658)
+ .+. +-..|--..+-+.....|+...+. ...--..+..=.. .|+++...+++-+-.. .-..+|.
T Consensus 334 s---L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C 401 (660)
T COG5107 334 S---LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFC 401 (660)
T ss_pred c---hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHH
Confidence 2 111 222233333333333444433221 0000000000000 1223222222211111 1345667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..++...+..-++.|..+|-+..+.+ ..+++..+++++.-++ .|++..|..+|+.-... ++.+..-....+..+...
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHh
Confidence 77777778888888899998888887 5577888888887665 57888888888876654 333333445566667778
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
++-..|..+|+...+.-.. -...|..++.--..-|+...+..+-+.|.+. -|...+.......|
T Consensus 480 nde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 480 NDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred CcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 8888888888866654333 3678888888888888888888887777763 44444333333333
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.002 Score=46.23 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-CHhHHHHHHHHHHh
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN-EIGRFWKLYKEMVS 209 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 209 (658)
+.+|..+...+...|++++|+..|++..+.++. ++..|..+..++.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555555555555555555555554322 4455555555555555 45566655555554
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.09 E-value=0.0041 Score=58.93 Aligned_cols=286 Identities=16% Similarity=0.087 Sum_probs=139.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHhcccccC--Cc-CCChhhHHHHHH
Q 006154 225 ALCKECKLEEALSLYYRMLKSGIWPNVV----CFNMIINEACQVGDLEFALKLFRKMGVMSGD--SV-LPNSVTHNCIIN 297 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~~~~li~ 297 (658)
-+|+.|+....+.+|+..++.|.+ |.. .|..|.++|...+++++|+++...=. .... |- .-...+...|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl-tlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL-TLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH-HHHHHhcchhccccccccccc
Confidence 478889999999999988887755 433 35555666666777888877665410 0000 00 001112222333
Q ss_pred HHHhcCChHHHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 298 GFCKLGRVEFAEEIRYAMI----KAGI-DCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
.+--.|.+++|.....+-. +.|- ......+-.|...|...|+--.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 3334455555543322221 1110 0112233334444433332100000 000011111100
Q ss_pred CCHHHHHHHHHHHH----hCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhc
Q 006154 373 GDVEGALFVLSDMI----DKHI-CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE----HMV-GDAYSYNILINYLCKS 442 (658)
Q Consensus 373 g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 442 (658)
..++.|.++|.+=+ +.|- ..-...|..|.+.|.-.|+++.|+...+.-++. |-. .....+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01122223222211 1110 011234555666666677788777766543321 211 1234566677777778
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhc
Q 006154 443 NNLAAAKQLLSSMIVR----GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV-----EKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 512 (658)
|+++.|.+.|+..... |- ........+|...|.-..++++|+..+.+-... ...-....+.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888887777654322 21 112344455666666667777777776543321 1122445677788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQR 527 (658)
Q Consensus 513 g~~~~a~~~~~~~~~ 527 (658)
|..+.|..+.+...+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888777665544
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.96 E-value=0.42 Score=46.57 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=68.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHH
Q 006154 140 EICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTF 219 (658)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 219 (658)
...|.+...|..|+.-|..+|..++..+++++|..- ++--+.+|...+.+-...+++.....+|.+.+... .+...|
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW 112 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLW 112 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHH
Confidence 367889999999999999999999999999999763 33355678888888888889999999999998764 456667
Q ss_pred HHHHHHHHh
Q 006154 220 NLVIYALCK 228 (658)
Q Consensus 220 ~~l~~~~~~ 228 (658)
...+.-..+
T Consensus 113 ~lYl~YIRr 121 (660)
T COG5107 113 MLYLEYIRR 121 (660)
T ss_pred HHHHHHHHh
Confidence 666654444
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.19 Score=50.99 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHH---------HHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCC
Q 006154 287 PNSVTHNCIINGFCKLGRVEFAEEIR---------YAMIKAGIDCNVRTYATLIDGYARGGS--SEEALRLCDEMVKRGL 355 (658)
Q Consensus 287 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~ 355 (658)
|..+.+.+-+..|...|.+++|.++- +.+... ..+.-.++.--.+|.+..+ +-+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566677777777776531 111111 1122223333344544333 2333444556666676
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 356 MPNNVVYNSTIHWLFAEGDVEGALFVLSD 384 (658)
Q Consensus 356 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 384 (658)
.|+.... ...++-.|++.+|.++|.+
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 6665432 2334445666666666544
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.031 Score=52.12 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
.|++++|...|+.+.+..|.+ +.++..++..|...|++++|...|+.+.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444443331 2333344444444444444444444443
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.029 Score=52.39 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTL 539 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l 539 (658)
..|...+..+.+.|++++|+..|+.+.+..+... ...+..+...|...|++++|...|+.+.+..+. ...++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444556778888888887777533211 245667777778888888888888888776655 45566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+..+...|+.++|..+|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777788888888888888774
No 210
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.80 E-value=0.38 Score=43.57 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
+..+..-+....+.|++++|.+.|+.+..+ ++..|-.+.+...++-++.+.+++++|+..+++..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---------------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR---------------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555556666789999999888877753 45666677888888889999999999999999988
Q ss_pred hCCCccCHHhHHHHHHHHH
Q 006154 174 VKGHSVSIHAWNNFLSHLV 192 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~ 192 (658)
..-+......|-..|.+++
T Consensus 99 ~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 99 RLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhCCCCCChhHHHHHHHHH
Confidence 8655444445555566555
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.033 Score=47.17 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCcHhH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK-----RGLMPNNVV 361 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 361 (658)
....++..+...|++++|..+...+.... |-+...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566666777777777777777665 55666777777777777777777777766642 355555443
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.62 Score=44.99 Aligned_cols=23 Identities=22% Similarity=-0.010 Sum_probs=15.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMG 118 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~ 118 (658)
+|..++......|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45666777777777777766654
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.013 Score=42.51 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+.+.+++++|.++++.+....|.++..|...+.++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.67 E-value=0.069 Score=44.76 Aligned_cols=88 Identities=8% Similarity=-0.016 Sum_probs=65.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
-+...|++++|..+|.-+...++.+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34567888888888888887777777777778877878888888888887775543 23444455677788888888888
Q ss_pred HHHHHHHHH
Q 006154 588 RELMKVMIL 596 (658)
Q Consensus 588 ~~~~~~~~~ 596 (658)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887776
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=1.2 Score=47.29 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLV 222 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (658)
.+.....-+....+...++.|+.+.+.-- ..++ ..........+.+.|++++|...|-+-+.. +.|. .+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence 34456667788888888888888766432 2211 223444556677899999999999887753 2332 24
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhc
Q 006154 223 IYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 223 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 302 (658)
+.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+. .. .|.. ..-....+..+.+.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~---~~-~g~~--~fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK---CD-KGEW--FFDVETALEILRKS 476 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc---CC-Ccce--eeeHHHHHHHHHHh
Confidence 55566666777778889999998876 666667899999999999999998887 22 2221 11245567777788
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
+-.++|..+-..... +......+ +-..|++++|++.+..+.
T Consensus 477 nyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 888888776655542 23333333 345688999999887764
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.62 E-value=0.37 Score=46.96 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 256 MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK---LGRVEFAEEIRYAMIKAGIDCNVRTYATLID 332 (658)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 332 (658)
.++-+|....+++...++.+.+.......+.-....-....-++-+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777788888888874322222222222222334445555 7888888888888555555777788887777
Q ss_pred HHH
Q 006154 333 GYA 335 (658)
Q Consensus 333 ~~~ 335 (658)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 663
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.3 Score=47.02 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHH
Q 006154 218 TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCI 295 (658)
Q Consensus 218 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 295 (658)
....-+..+++...++-|+.+-+. .+..++.. ......+-+.+.|++++|...+-+. .+. +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t---I~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIET---IGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---ccc-CCh-----HHH
Confidence 445566777777888888877544 22222221 2223334445678999998888772 221 222 234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCH
Q 006154 296 INGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 296 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~ 375 (658)
+.-|....+..+-...++.+.+.| -.+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 566666677777777888888887 4466667788889999998888777666544 2211 11234556666777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|..+-.+... .......++ -..+++++|++++..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777665554432 333334333 3567888888888765
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.26 Score=41.47 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+...|++++|..+|.-+...++- +..-+..|..++-..++++.|...+.........|+..+-....+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 45678888888888888775443 55556777777778888899998888888877778888888888888899999998
Q ss_pred HHHHHHHH
Q 006154 554 AMFSEMRN 561 (658)
Q Consensus 554 ~~~~~~~~ 561 (658)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888877
No 219
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.50 E-value=1.6 Score=46.99 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcccCCCCCC--HHhHHHHHHHHH-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHS--LESSCAIVHLLV-NWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDA 151 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~--~~~~~~~~~~l~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (658)
..|++-++-+.++...+|. +.++..++.+|. ...+++.|+..+++.+..... .++.+. --..-..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~----------k~~~~~l 105 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDL----------KFRCQFL 105 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHH----------HHHHHHH
Confidence 3566666666654444443 345778899988 678999999999987653111 000000 0122335
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC----CccCHHhHHHH-HHHHHhcCCHhHHHHHHHHHHhCC---CCcCHHHHHHHH
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKG----HSVSIHAWNNF-LSHLVKLNEIGRFWKLYKEMVSCG---YVENVNTFNLVI 223 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~l~ 223 (658)
+++.+.+.+... |...+++..+.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|...++..++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 677777777666 988888876632 22223333333 333333479999999999888542 234445555555
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhCCC---------CCChhhHHHHHHHHH--hcCCHHHHHHHHHHh
Q 006154 224 YALC--KECKLEEALSLYYRMLKSGI---------WPNVVCFNMIINEAC--QVGDLEFALKLFRKM 277 (658)
Q Consensus 224 ~~~~--~~g~~~~A~~~~~~m~~~~~---------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 277 (658)
.+.. +.+..+++.+..+++..... .|...+|..++..++ ..|+++.+...++++
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5443 56667788888877743211 234556777776655 467777776666654
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.49 E-value=0.021 Score=41.36 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 542 GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.|.+.+++++|.+.++.+...+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555532 22344444455555555555555555555554
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=0.94 Score=43.47 Aligned_cols=311 Identities=14% Similarity=0.046 Sum_probs=168.6
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHH--HHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAI--VHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAV 148 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 148 (658)
-.+|..+-++|+-..+..| |..+ +-+-.-.|+-..|++.-.+..+ ++. ....+-+
T Consensus 66 w~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~------------lls----sDqepLI 122 (531)
T COG3898 66 WESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASK------------LLS----SDQEPLI 122 (531)
T ss_pred HhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHh------------hhh----ccchHHH
Confidence 3567888888887665443 3333 3344456777777766554432 111 0111222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWN----NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (658)
...-.++-.-.|+++.|.+-|+.|.. ++.+-. .|.-.-.+.|..+.|+..-+..-..- +.=...+...+.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe 196 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLE 196 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHH
Confidence 22223344556999999999999986 333322 23333356788888888877776542 222557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHHh---cCCHHHHHHHHHHhcccccCCcCCChhh-HHHHHH
Q 006154 225 ALCKECKLEEALSLYYRMLKSG-IWPNVVC--FNMIINEACQ---VGDLEFALKLFRKMGVMSGDSVLPNSVT-HNCIIN 297 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~ 297 (658)
..|..|+++.|+++.+.-.... +.+++.- -..|+.+-.. .-+...|...-.+. ..+.||.+. -..-..
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-----~KL~pdlvPaav~AAr 271 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-----NKLAPDLVPAAVVAAR 271 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-----hhcCCccchHHHHHHH
Confidence 8888899999988888765432 3344331 2222222111 23344444444331 123444322 223346
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-cHhHHHHHHHHHHhcCCH
Q 006154 298 GFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR-GLMP-NNVVYNSTIHWLFAEGDV 375 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~ll~~~~~~g~~ 375 (658)
++.+.|++.++-.+++.+-+.. |...... +..+.+.|+ .++.-++...+. .++| +......+..+-...|++
T Consensus 272 alf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 6777888888888888877763 3333322 222233443 333333332221 1223 344555566666667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHc
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCR-NGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 423 (658)
..|..--+...+ ..|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 346 ~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 766655555443 34556666666555433 36777777666666654
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.43 E-value=0.94 Score=43.46 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=133.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH----HHhcCCh
Q 006154 337 GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWL--FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG----LCRNGCV 410 (658)
Q Consensus 337 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~ 410 (658)
.|+-..|.++-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|.. |+.+-..=+++ --+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 34555555444433211 122333333333332 234666666666666654 22222222222 2245666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCChHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPDIIT--YGTLIDGYC---KGGNIEGAV 484 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~--~~~li~~~~---~~g~~~~A~ 484 (658)
+.|..+-+...+.-+. -...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 6666666655554322 33455566666666666666666665544321 2222211 111221111 123344454
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-C
Q 006154 485 QVYENMKKVEKKPNLVI-YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-V 562 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 562 (658)
..-.+..+ ..||... -.....++.+.|+..++-.+++.+-+..|. +.++. +..+.+.|+ .++.-+++... .
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 44444443 3344332 222345566677777777777777666442 22221 122333443 23333333221 0
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCChHHHHHHHHHHHHC
Q 006154 563 GIAV-NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF-SKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 563 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~ 632 (658)
.++| +..+...+..+-...|++..|..--+.... ..|....|..+.+.- ...|+-.++..++-+.++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 345555666666667777666666555554 356666666555553 3347777777777666654
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.39 E-value=0.023 Score=48.15 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=24.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
+..+...|++++|..+.+.+....|.+...|..++.+|...|+..+|.+.|+++
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444444
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.014 Score=43.04 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNV----GI-AVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666665555555431 10 011 3344555555555555555555555544
No 225
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.35 E-value=1.1 Score=43.33 Aligned_cols=106 Identities=17% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING 547 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 547 (658)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-.++... ..++..|...+.+|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCC
Confidence 334445556677666666655442 35667777777777777777766654321 125667777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
+..+|..+..+ ++ +..-+..|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 77777666555 11 2345666777777777766543
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.015 Score=42.89 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 568 KVGYNILINFLCKFGCYQQARELMKVMILH----GI-IPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 568 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
..+++.+...|...|++++|+..+++..+. |- .|+ ..++..+...+...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999998843 21 122 45678888899999999999999998765
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.28 E-value=1.3 Score=43.38 Aligned_cols=91 Identities=15% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 403 GLCRNGCVKQAFKLHNQVLEEH---MVGDAYSYNILINYLCK---SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.++..++..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3445555555555555554431 00011111122333444 55566666666554444444555555555444321
Q ss_pred ---------cCChHHHHHHHHHHHhC
Q 006154 477 ---------GGNIEGAVQVYENMKKV 493 (658)
Q Consensus 477 ---------~g~~~~A~~~~~~~~~~ 493 (658)
....++|+..|.+.-+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcC
Confidence 11256666666665543
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.23 E-value=0.079 Score=52.21 Aligned_cols=66 Identities=6% Similarity=-0.103 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDA---ITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.+...+..+..+|...|++++|...|++..+..+.+. .+|..+..+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566788888899999999999999999998888865 45888999999999999999999998875
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.11 E-value=0.54 Score=37.53 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=22.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++.+..+|+-+.-.++...+.+.+..++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444443333344444444444444444444444444444443
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.16 Score=46.32 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCc--
Q 006154 101 VHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHS-- 178 (658)
Q Consensus 101 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-- 178 (658)
+.-+.+.|++..|...|...++ .|+..+-.+.++.-|..++...|++++|..+|..+.+.-++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~---------------~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIK---------------KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---------------cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 3334445556666665555554 24444445555556666666666666666666666553221
Q ss_pred cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 179 VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 179 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
--+.++..|..+..+.|+.++|...|+++.+.
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555555556666666666666666554
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.07 E-value=0.1 Score=42.25 Aligned_cols=82 Identities=10% Similarity=-0.010 Sum_probs=52.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNV---------------GIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..++..++.++++.|+.+....+.+..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567788888888888888888887765221 1345555666666666666666666666666553
Q ss_pred -cCCCCCHHHHHHHHHHH
Q 006154 597 -HGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 597 -~g~~p~~~~~~~l~~~~ 613 (658)
.+++-+...|..|+.-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 34555556666665543
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.61 Score=43.16 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
..|++.+|..+|.......+.+...--.++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444444444444444444444444444444555555555555544444
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.12 Score=49.69 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=80.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
-...|.+.|++..|...|++.... +. +...-+.++...... .-..+++.+.-+|.+.+++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH-------HHHHHhhHHHHHHHhhhhH
Confidence 356777888888888888876642 00 000001111111100 0334566677777777777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCh-HHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTT-LVTRFSKNCSP-EEVIELHD 627 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~-~~A~~~~~ 627 (658)
.+|++.-.+.+..+ ++|....---..++...|+++.|+..|+++++. .|+...... ++..-.+.... +...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777764 456666666677777777777777777777763 555444333 33333333332 33466677
Q ss_pred HHHHC
Q 006154 628 DMVLS 632 (658)
Q Consensus 628 ~m~~~ 632 (658)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 77654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.03 E-value=0.13 Score=50.87 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL----VIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778889999999999999999999999885 4443 35889999999999999999999999886
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=1.2 Score=41.29 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
-.......|++.+|..+|......... +...-..+...|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 334556677777777777777765433 3455556777777777777777777776543211111122222333444444
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWP-NVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
..+...+-.+.-.. | |...-..+...+...|+.++|++.+-.
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444443332 3 444445555666666666666666555
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.94 E-value=0.22 Score=40.77 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=64.8
Q ss_pred CHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 93 SLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 93 ~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
++..+..-+....+.|++++|.+.|+.+..+ ++..+-...+-..|+.+|.+.|++++|...+++.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR---------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4455666677777889999998888877763 5566667788888999999999999999999999
Q ss_pred HhCCCccCHHhHHHHHHHHHhc
Q 006154 173 KVKGHSVSIHAWNNFLSHLVKL 194 (658)
Q Consensus 173 ~~~g~~~~~~~~~~ll~~~~~~ 194 (658)
++..+...-..|-..+.+++..
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHH
Confidence 9876554445555555555443
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.89 E-value=1.3 Score=40.23 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 006154 371 AEGDVEGALFVLSDMIDKHI--CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM 425 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (658)
+.|++++|...|+.+..+.+ +-...+.-.++.++.+.+++++|....++.....+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 34555555555555543311 11222333344444455555555555555544433
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.81 E-value=0.35 Score=39.70 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
...+.|++++|.+.|+.+....|. ...+...++.+|.+.+++++|...+++.++....--..-|.....+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344567777777777777766654 455566677777777777777777777776432222233444444444
No 239
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.79 E-value=2.9 Score=46.39 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006154 325 RTYATLIDGYARGG--SSEEALRLCDEMVK 352 (658)
Q Consensus 325 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 352 (658)
.-...+|..|.+.+ .++.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33345556666655 55566655555543
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=0.82 Score=47.11 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=94.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV------IYNSIINGLC----KDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
.+++...-.|+-+.+++.+.+..+.+---.+. .|...+..++ .....+.|.++++.+....|......-.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444445566666666666554421111111 2222222222 2446777888888888887776666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVG---IAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT-RFS 614 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~ 614 (658)
-.+.+...|++++|++.|++..... .......+--++.++.-.+++++|.+.|.++.+.. .-+..+|.-+.. ++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 6777778888888888888765311 01123344556677778888888888888888642 223333333322 244
Q ss_pred hCCCh-------HHHHHHHHHHHH
Q 006154 615 KNCSP-------EEVIELHDDMVL 631 (658)
Q Consensus 615 ~~g~~-------~~A~~~~~~m~~ 631 (658)
..|+. ++|.+++.+...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 56666 777777776544
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=1.5 Score=43.69 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
...+|.++.+++.+.++.|+.+...+..+....++++.|...|++.... .|| ..+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566777777788888888888888888777788888888888888774 455 4556666666777888888888888
Q ss_pred HHHHcCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 593 VMILHGIIPDYV---TYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 593 ~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+..+. .|... .....+..|+.. ..++|+.++-+-.
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 434 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKET 434 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcc
Confidence 86653 34322 233334455544 3666777665433
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.2 Score=48.33 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=93.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS 514 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 514 (658)
-.+.|.+.|++..|..-|++.+.. + -|.+.-+.++..... ..-...+..+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------L-EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------h-hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 357888999999999988886653 0 011111112211111 1123456677778888899
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHHhcCCH-HHHHHHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG-YNILINFLCKFGCY-QQARELMK 592 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~-~~A~~~~~ 592 (658)
+.+|....++.....+.|..+..--..+|...|+++.|+..|+++++. .|+... -+.++.+-.+..+. +...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888888888999999999999999999884 455443 34444444444433 34467777
Q ss_pred HHHHc
Q 006154 593 VMILH 597 (658)
Q Consensus 593 ~~~~~ 597 (658)
.|...
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 77753
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.72 E-value=0.8 Score=36.60 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 468 GTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 468 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
...++.+...|+-|+-.+++..+.+ .-++++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444555555555555555443 233455555555555555555555555555555554
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.68 E-value=0.42 Score=37.95 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=70.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 006154 100 IVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV 179 (658)
Q Consensus 100 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~ 179 (658)
-+-+++..|+++.|.+.|.+.+. -+|.++.+|+.-..++.-+|+.++|++=+++..+..-..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~------------------l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALC------------------LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHH------------------hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 34567788899999988888876 678888899999999999999999998888888743332
Q ss_pred CHHhHH---HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006154 180 SIHAWN---NFLSHLVKLNEIGRFWKLYKEMVSCG 211 (658)
Q Consensus 180 ~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~g 211 (658)
+...+. .-...|...|+-+.|..=|+..-+.|
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 433333 33446677788888888888777766
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.65 E-value=0.28 Score=38.92 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCCH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK---VGYNILINFLCKFGCY 584 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 584 (658)
+....|+.+.|.+.|.+.....|..+.+||.-..++--.|+.++|+.-+++..+..-..+. ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4567788888888888888888888888888888888888888888888888774212122 2233444567778888
Q ss_pred HHHHHHHHHHHHcC
Q 006154 585 QQARELMKVMILHG 598 (658)
Q Consensus 585 ~~A~~~~~~~~~~g 598 (658)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888777665
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.62 E-value=3.1 Score=42.58 Aligned_cols=422 Identities=12% Similarity=0.060 Sum_probs=221.4
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVN-TFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII 258 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 258 (658)
+...|..++.---.....+.+..+++.++.. -|-.. .|......-.+.|..+.+.++|++-+.. ++..+..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4556666666554455556777777777753 24433 4455555556778888888888887653 444555565555
Q ss_pred HHHH-hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 006154 259 NEAC-QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARG 337 (658)
Q Consensus 259 ~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 337 (658)
..++ ..|+.+...+.|+....+.+..+. ....|...|.--...+++.....+++++++. ....|+....-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~- 194 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFL-SDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQ- 194 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchh-ccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHH-
Confidence 5444 346777777777775444444333 3345666666666666677777777776643 22223222222211
Q ss_pred CChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHH-hcCChHH
Q 006154 338 GSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HICPDHFTYSILTKGLC-RNGCVKQ 412 (658)
Q Consensus 338 g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~g~~~~ 412 (658)
..... .+.. ....+++.++-...... ...+.......-+.-.. ..+..++
T Consensus 195 ------------~l~~~-~~~~------------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 195 ------------LLNQN-EEKI------------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred ------------HHhcC-Chhh------------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 11100 0000 00011111111111000 00000011111111000 0111222
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---L----IPDIITYGTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~p~~~~~~~li~~~~~~g~~~~A~~ 485 (658)
+.....+.... --.++.......+....++.-+.+. + .++..+|...+.--.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 22222211111 1112222223333334444444331 1 2345678888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
+|+...-. +..-...|-..+.-....|+.+-|..++....+-..+ .+.+.-.-....-..|+++.|..+++.+.+. +
T Consensus 319 l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~ 396 (577)
T KOG1258|consen 319 LFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y 396 (577)
T ss_pred HHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C
Confidence 99887642 2223345555555556669999999998888877766 3333333333344567999999999999885 3
Q ss_pred CCChHH-HHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHHHHH----HHH-HHhCCChHHHHHHHHHHHHCCCC
Q 006154 565 AVNKVG-YNILINFLCKFGCYQQAR---ELMKVMILHGIIPDYVTYTTL----VTR-FSKNCSPEEVIELHDDMVLSGVS 635 (658)
Q Consensus 565 ~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~~~~~l----~~~-~~~~g~~~~A~~~~~~m~~~g~~ 635 (658)
|+..- -..-+....+.|+.+.+. +++..... | .-+..+...+ .+. +.-.++.+.|..++.+|.+. .+
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~ 472 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LP 472 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CC
Confidence 55432 223345566778888777 33333332 1 1122222222 222 33467899999999999985 56
Q ss_pred CCHHHHHHHHHHhhcCC
Q 006154 636 PDNQTYNAIISPLLGEK 652 (658)
Q Consensus 636 p~~~~~~~l~~~~~~~g 652 (658)
++...|..+++-..-.+
T Consensus 473 ~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 473 DCKVLYLELIRFELIQP 489 (577)
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 66677888877766554
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.58 E-value=0.77 Score=38.37 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.++..+...+.......+++.+...+..++..++.++..|++.+ ..+....++. ..+......++..|.+.+-
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444555555666666666665555445566666666666543 2333333331 1223333445666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 006154 584 YQQARELMKVMILHGIIPDYVTYTTLVTRFSKN-CSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLG 650 (658)
Q Consensus 584 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 650 (658)
++++..++.++-. . ...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 6666666655532 1 1122222222 6667777666541 155566666665543
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.53 E-value=0.27 Score=44.91 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-hHHHHHHHHHHHhcCCHHH
Q 006154 512 DASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVN-KVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 586 (658)
.|++..|...|....+..|. .+.++--|+..+...|++++|..+|..+.+. +-.|. +.++--|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555555554443 3344444555555555555555555555432 10111 2344444455555555555
Q ss_pred HHHHHHHHHHc
Q 006154 587 ARELMKVMILH 597 (658)
Q Consensus 587 A~~~~~~~~~~ 597 (658)
|...|++..+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.45 E-value=5.6 Score=44.33 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH--HHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG--YNILINFLC 579 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~ 579 (658)
|.+..+.+...+.+++|.-.|+..-+. ...+.+|-.+|++.+|+.+..++... -+... -..|+.-+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 334444445566666666665543322 33455666677777777776666431 12221 245666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 580 KFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
..+++-+|-++..+..+. | ...+..|++...+++|.++..
T Consensus 1011 e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 777777777776666542 1 122333444445555554443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=1.4 Score=45.54 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 397 YSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
+..++....-.|+-+.+++.+.+..+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~ 217 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKS 217 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhcc
Confidence 444555555566666676666665543
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=1.9 Score=38.70 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYAL 226 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 226 (658)
..|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+. +.-+..|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44555667788888999998888777642 222333222 223456777777777764 23345677777788
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhc
Q 006154 227 CKECKLEEALSLYYRMLKS--GIWPNVV--CFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 302 (658)
..+|.++.|-..+++.-+. ++.|+.. .|..-+...-..++...|.+++ ......+.+.
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~------------------gk~sr~lVrl 163 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY------------------GKCSRVLVRL 163 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH------------------HHhhhHhhhh
Confidence 8888888777777665431 2334322 2222222222333333333333 3344555666
Q ss_pred CChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCcHhHHHHHHHHHHhcCC
Q 006154 303 GRVEFAEEIRYAMIKA----GIDCN-VRTYATLIDGYARGGSSEEALRLCDEMVKRGL---MPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~---~p~~~~~~~ll~~~~~~g~ 374 (658)
.++++|-..+.+-... .--++ -..|...|-.+.-..++..|.+.++.--+.+- .-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 6666665444332211 00111 12344444555556677777777666433321 11333445555544 3455
Q ss_pred HHHHHHH
Q 006154 375 VEGALFV 381 (658)
Q Consensus 375 ~~~a~~~ 381 (658)
.+++.++
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5554443
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.40 E-value=0.079 Score=49.15 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCcCHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-----CGYVENVNTFNL 221 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~ 221 (658)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35556666666666666666666666665433 556666667777777766666666666654 466666666665
Q ss_pred HHHH
Q 006154 222 VIYA 225 (658)
Q Consensus 222 l~~~ 225 (658)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.36 E-value=1.8 Score=43.32 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+..++.+.|+.++|.+.+.++.+..+. ...+...|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444445556666666666665544433 334555566666666666666666655543
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.35 E-value=1.3 Score=44.00 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHH---HcCCCCHhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 514 SLDAAKSLLQASQ---RIGLLDAITYNTLINGYFI---------NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 514 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
..+.|..+|.+.. +..|.....|..+..++.. ..+..+|.++.++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3466777777777 5555556666666555543 234567888888888876 55788888888888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhcCC
Q 006154 582 GCYQQARELMKVMILHGIIPDY-VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN---QTYNAIISPLLGEK 652 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g 652 (658)
|+++.|...|++.... .||. .+|......+.-.|+.++|.+.+++..+ ..|-. ......++.|+..+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 9999999999999985 5664 4565566667778999999999999776 56655 33334444555544
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.32 E-value=2.3 Score=39.04 Aligned_cols=199 Identities=19% Similarity=0.145 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEE-HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID- 472 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~- 472 (658)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444455555555555555555555432 112233444445555555555666666666555532222 111111112
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEK--KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKI 549 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 549 (658)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.......+. ....+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45566666666666666644211 012223333333344556666666666666666555 455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666553 222 23333333334455556666666666554
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.29 E-value=0.21 Score=40.46 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=31.1
Q ss_pred ccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 006154 281 SGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA-GIDCNVRTYATLIDGY 334 (658)
Q Consensus 281 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~ 334 (658)
......|+..+..+++.+|+..|++..|.++.+...+. +++-+..+|..|++-.
T Consensus 44 ~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 44 PSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33445566666666666666666666666666665443 4455555666666543
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.10 E-value=3.2 Score=39.54 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006154 396 TYSILTKGLCRNGCV---KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR 458 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 458 (658)
++..++.++...+.. ++|..+++.+...... .+.++..-+..+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555566555543 3444455555443322 2334444455555566667777777776664
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.4 Score=43.64 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHh
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDL-EFALKLFRKM 277 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 277 (658)
+-+++++++|...|+.||-.+-..++.++.+.+-. .+..+++-.|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 45788889999999999998888888888877653 3444444443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.64 Score=43.53 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=109.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCh
Q 006154 405 CRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI----ITYGTLIDGYCKGGNI 480 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~ 480 (658)
-..|++.+|-..++++++..+. |...++..=.++...|+.+.-...++++... ..++. ..-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3578888888889998887554 7888888888888899988888888888765 22333 3333444556678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 481 EGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 481 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
++|++.-++..+.+. .|.....+....+-..|++.++.++..+-...-.. -...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998888643 36677778888888899999998887764432111 2233444455566778999999999
Q ss_pred HHHH
Q 006154 557 SEMR 560 (658)
Q Consensus 557 ~~~~ 560 (658)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.97 E-value=0.078 Score=33.67 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF 187 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 187 (658)
.++..+...|.+.|++++|.++|++..+..+. |+..|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45666777777777777777777777776432 45555443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.95 E-value=0.098 Score=33.20 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
..+...|...|++++|.++++++.+..|.++..+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 344444444444444444444444444444444433
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.93 E-value=2.9 Score=38.25 Aligned_cols=222 Identities=18% Similarity=0.060 Sum_probs=161.0
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVR-GLIPDIITYGTLIDGYCKGGNIEGAV 484 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 484 (658)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555566666666555332 13567777888888999999999988887752 23345566667777778888899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006154 485 QVYENMKKVEKKPNLVIYNSIIN-GLCKDASLDAAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 560 (658)
..+.........+ ......... .+...|+++.|...++......+ .....+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988754443 222223333 78899999999999999876544 244555555556778899999999999998
Q ss_pred HCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 561 NVGIAV-NKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 561 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
... .. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 853 23 3677888889999999999999999999875 343 445555555555777899999999888874
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.92 E-value=1.1 Score=45.62 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=88.1
Q ss_pred HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 006154 262 CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSE 341 (658)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 341 (658)
.-.|+++++.++...-. +. ..++ ..-.+.++.-+-+.|..+.|+++..+-. .-.+...+.|+++
T Consensus 272 v~~~d~~~v~~~i~~~~-ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASN-LL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHTT-HHH-----HHHH-TG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHcCChhhhhhhhhhhh-hc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 34677777666665200 11 1122 3346777777778888888777644332 1234556778888
Q ss_pred HHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 342 EALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVL 421 (658)
Q Consensus 342 ~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (658)
.|.++.++ .++...|..|.....+.|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 87765533 23666788888888888888888888877653 4556666677777777766666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 422 EEHMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
..|- ++....++.-.|+.++..+++.+
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5542 44445555556666666665543
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.91 E-value=2.2 Score=42.69 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 216 VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP-NVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 216 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
..+-..+...+.+.|+.++|++.+++|.+..... +......|+.++...+.+.++..++.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3344445666668899999999999988653221 233667888999999999999999988
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=6 Score=41.70 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=64.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCccCHHhHH-----HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 157 TQIGATEGAYDVIQKLK--------VKGHSVSIHAWN-----NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
.+.-++++-..+.+.+. ..|++.+..-|. .++.-+...+.+..|+++-+.+...-..- ...|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34444555444444433 245554444443 45666777788888888877765422111 45566666
Q ss_pred HHHHhcCCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 224 YALCKECKL--EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 224 ~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.-+.+..+. +++.+..++=...-. -...+|..+.+-....|+.+-|..+++.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 656554322 233333333222212 2344666777777778888888888765
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.90 E-value=0.82 Score=39.87 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=71.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH---GIIPDYVTYT 607 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~ 607 (658)
...+..++..|++.|+.++|.+.|.++.+....+. ...+-.++......|++..+...+.++... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677778888888888888888888877544443 344566777777888888887777766543 2222222211
Q ss_pred HHHH--HHHhCCChHHHHHHHHHHHHC-C-------CCCCHHHHHHHHHHhhcCC
Q 006154 608 TLVT--RFSKNCSPEEVIELHDDMVLS-G-------VSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 608 ~l~~--~~~~~g~~~~A~~~~~~m~~~-g-------~~p~~~~~~~l~~~~~~~g 652 (658)
.... .+...|++.+|-+.|-..... + +.|+.......+.++....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~ 170 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLD 170 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCC
Confidence 1222 244567888877776655432 1 2344444455555554433
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.87 E-value=1 Score=45.66 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=77.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
....-.|+++++.+..+.-.-. +..+..-.+.++..+.+.|..+.|+++-+.-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3344556666655555311100 01123345666666666676666666543221 1233445567766
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
.|.+..++. .+...|..|.....+.|+++-|++.|.+ .. -+..++-.|.-.|+.+.-.++.+
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k---~~---------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK---AK---------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH---CT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh---hc---------CccccHHHHHHhCCHHHHHHHHH
Confidence 666654332 2555677777777777777777777766 11 24555556666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCD 348 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 348 (658)
.....| -++....++...|+.++..+++.
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 655554 13333444445556655555543
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=1 Score=42.27 Aligned_cols=118 Identities=9% Similarity=-0.061 Sum_probs=85.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCC
Q 006154 156 CTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENV----NTFNLVIYALCKECK 231 (658)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~~~~g~ 231 (658)
..-.|++.+|-..++++++. .+.|..+++..=.++.-.|+...-...+++++.. ..+|. +.-....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888888888875 4557788888888888888888888888888753 12332 222333334557888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
+++|.+.-++..+.+.. |..+-.+....+--.|++.++.++..+
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 89998888887776432 666777777888888888888888776
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.72 E-value=0.24 Score=44.99 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHH
Q 006154 288 NSVTHNCIINGFC-----KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG----------------SSEEALRL 346 (658)
Q Consensus 288 ~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~ 346 (658)
|..+|...+..+. +.+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 4455555555443 23567777777888888888888888888887764432 22345555
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHHhcC
Q 006154 347 CDEMVKRGLMPNNVVYNSTIHWLFAEG 373 (658)
Q Consensus 347 ~~~~~~~g~~p~~~~~~~ll~~~~~~g 373 (658)
+++|...|+.||..+-..+++++.+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 566666666666555555555555444
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=2.4 Score=35.81 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=63.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH-HHHHH--HHHHHhcCCH
Q 006154 510 CKDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV-GYNIL--INFLCKFGCY 584 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~~ 584 (658)
...+..++|+.-|..+.+.|.. .....-.........|+...|...|+++-.....|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666666665554 22223333444555666666666666665533223222 11111 1234456666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
+......+-+...|-+.-...-..|..+-.+.|++.+|..+|+.+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666555555433322222233455555666677777777776666543333
No 271
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.47 E-value=8.5 Score=41.48 Aligned_cols=403 Identities=11% Similarity=0.046 Sum_probs=204.1
Q ss_pred hHHHHHHhccCCchhhhhhhCCCCC----HHHH-HHHHHh-cCC-ChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcC
Q 006154 35 VFRAICVNLRQRKWKILEQMAPSLT----NSLV-NRVVSE-FRK-SPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNW 107 (658)
Q Consensus 35 ~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~-~~vl~~-~~~-~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (658)
.+...-..+++.+|.........+. ...+ -..|.. +.. +++. +-.++.+.++.+.....-..-...|.+.
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 3455666778888887655443332 2222 222222 222 2343 3333344444444433444555666666
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006154 108 RRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF 187 (658)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 187 (658)
+++.+...+. ...|.+...-.....+....|+.++|.+....+...|.. .+..++.+
T Consensus 113 ~~w~~~~~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l 169 (644)
T PRK11619 113 EDWRGLLAFS----------------------PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKL 169 (644)
T ss_pred cCHHHHHHhc----------------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHH
Confidence 6666544321 134667777788889999999999898888888877644 67888999
Q ss_pred HHHHHhcCCHh--HHHHHHHHHHhCCCCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChhh
Q 006154 188 LSHLVKLNEIG--RFWKLYKEMVSCGYVENVNTFNLVIYALCK------------ECKLEEALSLYYRMLKSGIWPNVVC 253 (658)
Q Consensus 188 l~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~ 253 (658)
+..+.+.|... ..++=++.+...| +...-..+...+.. ..+...+..++.. +.|+...
T Consensus 170 ~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~ 241 (644)
T PRK11619 170 FSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFT 241 (644)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhh
Confidence 99888777543 3334344444433 22222222221100 0111122111111 1123221
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 254 FNMIINEAC--QVGDLEFALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 254 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
-..++.++. ...+.+.|..++.... ...+..+. ...+..+.......+...+|...+...... ..+......
T Consensus 242 ~~~~~~~l~Rlar~d~~~A~~~~~~~~--~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~ 317 (644)
T PRK11619 242 RQMAAVAFASVARQDAENARLMIPSLV--RAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLER 317 (644)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHH
Confidence 222222222 3456788888888731 22222222 223444444444443355666666655433 224444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGC 409 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (658)
-++.....++++.+...+..|....- -...-..-+..++...|+.++|...|..+... ..-|..+... +.|.
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~--~Lg~ 389 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ--RLGE 389 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--HcCC
Confidence 56666688899988888888755322 13333444666767789999999999887431 1123222211 1221
Q ss_pred hHHH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 410 VKQA-FKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 410 ~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
.-.. ...... ....+. . ..-..-+..+...|....|...+..+... .+......+.....+.|.++.++....
T Consensus 390 ~~~~~~~~~~~-~~~~~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 390 EYPLKIDKAPK-PDSALT-Q-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCCCCCCc-hhhhhc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 1000 000000 000000 0 01122344556677777777777776664 234444455555556676666665554
Q ss_pred H
Q 006154 489 N 489 (658)
Q Consensus 489 ~ 489 (658)
.
T Consensus 464 ~ 464 (644)
T PRK11619 464 A 464 (644)
T ss_pred h
Confidence 3
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.39 E-value=4.8 Score=38.31 Aligned_cols=163 Identities=11% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIE---GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
++..++.+|...+..+ +|..+++.+... ..-.+.++..-+..+.+.++.+++.+.+.+|...-......+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555666776666544 344555555443 222344555556666667778888888888877655333444444443
Q ss_pred H---HHcCCHHHHHHHHHHHHHCCCCCChHHH--HHHHH---HHHhcCC------HHHHHHHHHHHHH-cCCCCCHHHHH
Q 006154 543 Y---FINGKIAEAFAMFSEMRNVGIAVNKVGY--NILIN---FLCKFGC------YQQARELMKVMIL-HGIIPDYVTYT 607 (658)
Q Consensus 543 ~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~---~~~~~g~------~~~A~~~~~~~~~-~g~~p~~~~~~ 607 (658)
+ ... ....|...++.+....+.|....+ ..++. .....++ ++...+++....+ .+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 332 334566666666544344444311 11111 1112111 4444444543322 12233333322
Q ss_pred ---HH----HHHHHhCCChHHHHHHHHHHH
Q 006154 608 ---TL----VTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 608 ---~l----~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++ +..+.+.+++++|.++|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 334677899999999998654
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.25 E-value=0.059 Score=31.85 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+++..+..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666667777777777777777776664
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=4.2 Score=36.59 Aligned_cols=215 Identities=12% Similarity=0.063 Sum_probs=110.8
Q ss_pred CCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006154 90 FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVI 169 (658)
Q Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 169 (658)
+..-...|..-+..+..+++|+.|...+.+..+ +...+...| -...-++.|.-+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~------------------~yEnnrslf-------hAAKayEqaamLa 81 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK------------------GYENNRSLF-------HAAKAYEQAAMLA 81 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------------HHHhcccHH-------HHHHHHHHHHHHH
Confidence 344466788888889999999999888877764 111111111 1223344555555
Q ss_pred HHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 170 QKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC--GYVEN--VNTFNLVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 170 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
+++.+. +--+..++.-...|..+|.++.|-..+++.-+. ++.|+ ...|..-+..+...++...|.++
T Consensus 82 ke~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------- 152 (308)
T KOG1585|consen 82 KELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------- 152 (308)
T ss_pred HHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-------
Confidence 555443 112334555666677777777666666554431 12222 11222222222222222233222
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccc-cCCcCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---C
Q 006154 246 GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMS-GDSVLPN-SVTHNCIINGFCKLGRVEFAEEIRYAMIKAG---I 320 (658)
Q Consensus 246 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 320 (658)
+...-+.+.+...+++|-..+.+-.... ...--++ -..|...|-.+.-..++..|++.++.-.+.+ -
T Consensus 153 --------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~ 224 (308)
T KOG1585|consen 153 --------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK 224 (308)
T ss_pred --------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC
Confidence 2333344555566666555554410000 0000011 1224455556666778888888888755432 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 321 DCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 321 ~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+.+..+...|+.+| ..|+.+++.+++
T Consensus 225 sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 225 SEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 34566777777776 566777665554
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.98 E-value=6 Score=37.84 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC---
Q 006154 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCK--G----GNIEGAVQVYENMKKVEK---KPNLVIYNSIINGLCKDAS--- 514 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 514 (658)
+...+++.|.+.|+.-+..+|-+....... . .....|..+|+.|++..+ .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445567777777777666665543322222 1 224567778888877643 2445555555544 2222
Q ss_pred -HHHHHHHHHHHHHcCCC--CH-hhHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 515 -LDAAKSLLQASQRIGLL--DA-ITYNTLINGYFINGK--IAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 515 -~~~a~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
.+.++.+++.+...|.. +. .....++........ ..++.++++.+.+.|+++....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35667777777776665 22 222222222221111 346788888888888888877776655433
No 276
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.96 E-value=11 Score=40.83 Aligned_cols=222 Identities=11% Similarity=0.022 Sum_probs=118.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMVGDAY-------SYNILIN-YLCKSNNLAAAKQLLSSMIVR----GLIPDIITYGTLI 471 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~li 471 (658)
.....++++|..+..++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776543332221 2333322 334578888888888777654 1223455666677
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCH--HHHHHHHHHHHHcCCC-------CHhhHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIY---NSII--NGLCKDASL--DAAKSLLQASQRIGLL-------DAITYN 537 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~g~~--~~a~~~~~~~~~~~~~-------~~~~~~ 537 (658)
.+..-.|++++|..+..+..+....-+...+ ..+. ..+..+|+. .+....+......... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777789999998888766654222333332 2222 224456633 3333333333322111 223344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHCCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEM----RNVGIAVNKVGY--NILINFLCKFGCYQQARELMKVMILHGIIP----DYVTYT 607 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~ 607 (658)
.+..++.+ .+.+..-...- ......|-...+ ..|+......|+.++|...++++......+ +...-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 33333222222 222222222222 267778888999999999988887543222 322323
Q ss_pred HHHHH--HHhCCChHHHHHHHHH
Q 006154 608 TLVTR--FSKNCSPEEVIELHDD 628 (658)
Q Consensus 608 ~l~~~--~~~~g~~~~A~~~~~~ 628 (658)
..+.. ....|+..++.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33333 2347788777776665
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.79 E-value=3.4 Score=34.41 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=17.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK 193 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 193 (658)
++..+.+.+....+...++.+...+. .++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444444444444444332 233344444444443
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=4 Score=34.55 Aligned_cols=120 Identities=14% Similarity=0.075 Sum_probs=62.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH---HHHHhcCCH
Q 006154 157 TQIGATEGAYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI---YALCKECKL 232 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~g~~ 232 (658)
.+.+..++|+..|..+.+.|...-+. ..-.........|+...|...|+++-.....|-+.--..-+ -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777765542221 12223334556666667777776666543233222111111 123455666
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
++.....+.+-..+-+.-...-..|.-+-.+.|++..|.+.|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 66666665554443333333444555555566666666666666
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.52 E-value=1.5 Score=41.72 Aligned_cols=229 Identities=12% Similarity=0.046 Sum_probs=140.6
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHh
Q 006154 404 LCRNGCVKQAFKLHNQVLEEH--MVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR--GLIPDI---ITYGTLIDGYCK 476 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~---~~~~~li~~~~~ 476 (658)
+....+.++|+..+.+.+.+- ...--.++..+..+.++.|.+++++..--.-+.. ...... ..|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888776651 1123346777788888888888776543222111 011111 223333344444
Q ss_pred cCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHc
Q 006154 477 GGNIEGAVQVYENMKKV-EKKP---NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFIN 546 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 546 (658)
..++.+++.+-+.-... |..| --.....+..++...+.++.+++.|+.+.+.... ...++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333321 2222 1133445677777788899999999987764332 456789999999999
Q ss_pred CCHHHHHHHHHHHHH----CCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRN----VGIAVNKVGY-----NILINFLCKFGCYQQARELMKVMIL----HGIIPD-YVTYTTLVTR 612 (658)
Q Consensus 547 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~ 612 (658)
.|+++|.-+..+..+ .++..-..-| -.|.-++...|+...|.+.-++..+ .|-++- ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777644 2322112222 2455677888998888888877553 342221 2234566777
Q ss_pred HHhCCChHHHHHHHHHHHHC
Q 006154 613 FSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~ 632 (658)
|...|+.+.|..-|+.....
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 88999999999999988753
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.32 E-value=1.1 Score=41.90 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-----VGIAVNKVGYNIL 574 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 574 (658)
.++..++..+...|+.+.+...++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34556666777777777777777777777777777777888888888887777777777644 5666666655544
Q ss_pred HHH
Q 006154 575 INF 577 (658)
Q Consensus 575 ~~~ 577 (658)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.26 E-value=4.8 Score=34.41 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=80.3
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006154 167 DVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSG 246 (658)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 246 (658)
+.++.+.+.++.|+...+..++..+.+.|++.. +.++++.++-+|.......+-.+ .+....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 445556667788888888888888888887655 44455555555554444333222 23344555555555543
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 247 IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 247 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
=...+..++..+...|++-+|+++.+. ... .+......++.+..+.++...-..+++-..++
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~---~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQ---YHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHH---cCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112455677778888888888888876 211 12233445666666666665555555555443
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.11 E-value=8.5 Score=36.88 Aligned_cols=203 Identities=9% Similarity=-0.026 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH----HHHCC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---Chh
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDE----MVKRG-LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK-HICP---DHF 395 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~ 395 (658)
.+|..+..+.+..|.+++++..--. ..+.. -..-...|..+..++-+..++.+++.+-+.-... |..| ...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455555666666666655432211 11110 0001223444555555555555555544443322 2222 112
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHM-----VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR----GLIPDIIT 466 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~ 466 (658)
...++..++...+.++++++.|+...+-.. .....++..|...|.+..|+++|.-+..+..+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 334456666777778888888887765321 113356778888888888888877666554432 22211122
Q ss_pred HHH-----HHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 467 YGT-----LIDGYCKGGNIEGAVQVYENMKK----VEKKPN-LVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 467 ~~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|.. |.-++...|....|.+.-++..+ .|-.+- ......+.+.|...|+.+.|..-++.+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 222 33355667777777776665543 332221 22334566677788888888777776543
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.74 E-value=5.7 Score=33.94 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 237 SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 316 (658)
++++.+.+.++.|+...+..++..+.+.|++.....++.- ++-+|.......+-.+ .+....+.++--+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-------~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-------HVIPDSKPLACQLLSL--GNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-------cccCCcHHHHHHHHHh--HccChHHHHHHHHHH
Confidence 3344444555666666666666666666665555544433 2333333332222111 112223333333333
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 317 KAGIDCNVRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 317 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
++ =...+..+++.+...|++-+|+++....
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 0012344555566666666666655543
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.65 E-value=16 Score=38.85 Aligned_cols=178 Identities=14% Similarity=0.027 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHH----H-HHhcCChHHHHHHHHHHHH-------CCCCCcHhHHHHHHHHHHhc
Q 006154 305 VEFAEEIRYAMIKAGIDCNVRTYATLID----G-YARGGSSEEALRLCDEMVK-------RGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 305 ~~~A~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~~-------~g~~p~~~~~~~ll~~~~~~ 372 (658)
...|.+.++...+.| +......+.. + +....+.+.|..++..+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 445666666666655 2222222222 2 3345667777777777655 33 222344444555443
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hc
Q 006154 373 G-----DVEGALFVLSDMIDKHICPDHFTYSILTKGLCR-NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC----KS 442 (658)
Q Consensus 373 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 442 (658)
. +.+.|..++.+..+.|.+ +....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 445566666666555433 22222111111111 13455666666666666532 22222222221 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006154 443 NNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE 494 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 494 (658)
.+.+.|..++.+..+.|....... ...+..+.. +.++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 355666666666666552111111 112222222 55555555555554443
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.15 E-value=6.4 Score=33.17 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 498 NLVIYNSIINGL---CKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 498 ~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+..+.+.|+... ...++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+++.+.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 334444555443 34667777777777777776665555555555566777777777777776654
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.11 E-value=36 Score=41.62 Aligned_cols=314 Identities=11% Similarity=-0.003 Sum_probs=164.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRM----LKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCII 296 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 296 (658)
.+..+-.+++.+.+|.-.+++- ++. .....-|..+...|+..+++|....+... ... .| ....-|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~---r~a---~~---sl~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSAR---RFA---DP---SLYQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHH---hhc---Cc---cHHHHH
Confidence 4555677888999999999883 222 11223444555589999999988877763 111 12 233445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHH-HHHHHhcCCH
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNST-IHWLFAEGDV 375 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-l~~~~~~g~~ 375 (658)
......|++..|...|+.+...+ ++...+++-++......|.++......+-.... ..+....++.+ +.+-.+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 56678899999999999999875 555778888888777888888877766555443 22233334332 3444667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHH--HHHHHHhcCChH--HHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhc
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSI--LTKGLCRNGCVK--QAFKLHNQVLEEHMVG---------DAYSYNILINYLCKS 442 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 442 (658)
+....... .. +..+|.. ++..+.+..+-+ .-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77666554 11 1112221 233333222211 1112232222221111 112333333322211
Q ss_pred CCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHH
Q 006154 443 NNLAAAKQLLSSMIVRGLIPD------IITYGTLIDGYCKGGNIEGAVQVYEN-MKKVEKKP-----NLVIYNSIINGLC 510 (658)
Q Consensus 443 ~~~~~A~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~-----~~~~~~~l~~~~~ 510 (658)
.-- ....... +..++ ...|..-+..-....+..+-+-.+++ +......| -..+|....+...
T Consensus 1608 el~----~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1608 ELE----NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred HHH----HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 110 0111110 11111 11122122111011111111111111 11111111 2346777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+.|.++.|...+-.+.+.. -+.++--.+......|+...|+.++++..+.
T Consensus 1682 ~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7888888887776666665 4556666677788888888888888888754
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.85 E-value=7 Score=32.96 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=10.0
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006154 510 CKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~ 529 (658)
...|++.+|..+|+.+....
T Consensus 55 i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHhCCHHHHHHHHHHHhccC
Confidence 34555555555555544443
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.77 E-value=8.9 Score=33.95 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=83.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIIN 507 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~ 507 (658)
+.+||.+.-.+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+-+...-+.... |-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 45677777777778888888888877777543322222332232 22457777777766666554322 11122222221
Q ss_pred HHHhcCCHHHHHHH-HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSL-LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-------KVGYNILINFLC 579 (658)
Q Consensus 508 ~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~ 579 (658)
..-++.+|..- .++.... +..-|...+-.|.- |+.. ...+++++... -..+ ..||-.|..-+.
T Consensus 178 ---~k~dP~~A~tnL~qR~~~~---d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEKS---DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHhc---cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHh
Confidence 22344555433 3333333 33334333322221 2211 11223333321 1111 346778888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006154 580 KFGCYQQARELMKVMILH 597 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~ 597 (658)
..|+.++|..+|+-.+..
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999888865
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.71 E-value=0.45 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 290
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.64 E-value=17 Score=36.81 Aligned_cols=219 Identities=12% Similarity=0.050 Sum_probs=144.5
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHH
Q 006154 107 WRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNN 186 (658)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 186 (658)
.+-.+....++++.......+-...+-+-+-.+...+.+.....+++..+..+-...-...+..+|.+.| -+-..+..
T Consensus 27 ~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~e 104 (711)
T COG1747 27 QSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLE 104 (711)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3444444555555544433333333433333444566777888899999999999999999999999875 36788899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C---hhhHHHHHHHH
Q 006154 187 FLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP--N---VVCFNMIINEA 261 (658)
Q Consensus 187 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~ 261 (658)
++..|... ..+.-..+++++.+..+. |+..-..|...| ..++.+.+..+|.++...=++. + ...|.-++...
T Consensus 105 l~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i 181 (711)
T COG1747 105 LLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI 181 (711)
T ss_pred HHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc
Confidence 99999888 667888999999987542 444444455555 4488899999998877542210 1 11344333311
Q ss_pred HhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 262 CQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA 335 (658)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 335 (658)
-.+.+..+.+...+ -...|...-.+.+..+-.-|....++++|.+++..+.+.+ ..|+..-..++..+.
T Consensus 182 --~dD~D~fl~l~~ki--qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 182 --GDDKDFFLRLQKKI--QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred --cccHHHHHHHHHHH--HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 35677777777764 2223333345566666677888899999999999888876 556666666665543
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.53 E-value=3.7 Score=36.02 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCccCHHhHHHHHHHHHhcCCHhHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK---GHSVSIHAWNNFLSHLVKLNEIGRFW 201 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~a~ 201 (658)
++.....|+..|. ..+.+++.+++....+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444444444443 56677777777666652 22456666666666666666666653
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.44 E-value=4.6 Score=35.22 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH--
Q 006154 183 AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN--VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMII-- 258 (658)
Q Consensus 183 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-- 258 (658)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+|+.....|++..+.....+....--.+.......-+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445555556666666666666666555433222 3344555555566666666666655544321111111111111
Q ss_pred -H--HHHhcCCHHHHHHHHHH
Q 006154 259 -N--EACQVGDLEFALKLFRK 276 (658)
Q Consensus 259 -~--~~~~~g~~~~A~~~~~~ 276 (658)
. .+...+++..|-+.|-+
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 1 12235677777777765
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.06 E-value=0.56 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|..|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999999999999998543
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.89 E-value=25 Score=37.44 Aligned_cols=274 Identities=16% Similarity=0.025 Sum_probs=166.0
Q ss_pred ChHHHHHHHHHHHHCCCCCcHhHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHh
Q 006154 339 SSEEALRLCDEMVKRGLMPNNVVYNSTI----HW-LFAEGDVEGALFVLSDMID-------KHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 339 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 406 (658)
....|.++++...+.|. ...-..+. .+ +....+.+.|+.+++.+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35677888888777763 22222222 22 4466789999999998877 44 34456667777776
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 006154 407 NG-----CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK-SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC----K 476 (658)
Q Consensus 407 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~ 476 (658)
.. +.+.|..++....+.|.+ +.......+..... ..+...|.++|......|..+ .+-.+...|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCc
Confidence 43 667799999999888744 44433333222222 246789999999999987532 2222222221 2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH----HHH----cCC
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING----YFI----NGK 548 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~g~ 548 (658)
..+.+.|..++++..+.| .|...--...+..+.. ++++.+.-.+..+.+.+.....+-...+.. ... ..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 457889999999999987 3332333333344444 778888777777777766533222222211 111 225
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hCCChH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFS----KNCSPE 620 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~ 620 (658)
.+.+...+.+....| +......+.+.|... .+++.|...+......+ ....|+ +...+- -.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hH
Confidence 667777777777765 555556666665544 35888888888888765 233332 332222 123 67
Q ss_pred HHHHHHHHHHHC
Q 006154 621 EVIELHDDMVLS 632 (658)
Q Consensus 621 ~A~~~~~~m~~~ 632 (658)
.|.+++++..+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 888888888764
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.33 E-value=0.44 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAY 166 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~ 166 (658)
..|.++.+|..+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56788899999999999999998886
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=31 Score=36.97 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=96.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSV---SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
-++.+.+.+.+++|+...+..... .+ -...+..++..+...|++++|-...-.|.. -+..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 466778888899998887766543 22 345677888888888899888888888875 355666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
.++......+ +.......+...|..++..+.. .+...-.++..+ .+++...-...+++
T Consensus 436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~--------Wp~~Lys~l~iisa---------- 493 (846)
T KOG2066|consen 436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKE--------WPGHLYSVLTIISA---------- 493 (846)
T ss_pred ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHh--------CChhhhhhhHHHhh----------
Confidence 6665443332 2222222355577777777766 444444443333 22222211111111
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVK 352 (658)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 352 (658)
+-.+..+. ..+...-..|+..|...+++.+|++++-..+.
T Consensus 494 --~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 494 --TEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --cchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 01111111 11222233377778888888888887766543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.22 E-value=0.98 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=11.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..++.++...|++++|+..++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.02 E-value=1.1 Score=26.25 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006154 604 VTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPD 637 (658)
Q Consensus 604 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 637 (658)
.+|..+...|...|++++|+..+++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678889999999999999999999998 5564
No 299
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.92 E-value=5.4 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
|..-|+++....|....++..+..+|..
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3333444444444455555555555543
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.78 E-value=15 Score=32.00 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY-----NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
+...+...|++++|...++..... |....+ -.|.......|.+++|+.+++.....+.. ......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 345667778888888888777653 222222 23455667778888888887776654321 22233445567
Q ss_pred HhCCChHHHHHHHHHHHHCC
Q 006154 614 SKNCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~~g 633 (658)
...|+-++|+.-|++.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 78888888888888888764
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.53 E-value=16 Score=31.90 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIY--NSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLI 540 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 540 (658)
.|..++.... .+.+ +.....+++..........++ ..+...+...+++++|...++.......+ ...+-..|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444332 2333 444555555554222122222 23345567788888888888877654333 233444567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 541 NGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 541 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
......|.+++|+.+++...+.+.. ......-.+.+...|+-++|+.-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 7788889999999988877764322 2224455678889999999999999988864
No 302
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=5.4 Score=40.88 Aligned_cols=148 Identities=16% Similarity=0.062 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEA 343 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 343 (658)
.|+++.|..++.. +. ....+.++..+.+.|..++|+++- +|... -.....+.|+++.|
T Consensus 599 rrd~~~a~~vLp~---I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 599 RRDLEVADGVLPT---IP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hcccccccccccc---Cc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHH
Confidence 4566666555444 11 223445566666666666665432 22211 12334566777777
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
.++..+.. +..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77665532 556677888888888888888887776654 344555566666666555555555555
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 424 HMVGDAYSYNILINYLCKSNNLAAAKQLLSS 454 (658)
Q Consensus 424 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 454 (658)
|.. |....+|...|+++++.+++.+
T Consensus 722 g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 432 3334455667777777776654
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.39 E-value=4.1 Score=30.68 Aligned_cols=61 Identities=5% Similarity=-0.049 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
.-+..+-++.+...++.|++....+.+++|.+.+++..|+++++..+.+ ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3355555566666667777777777777777777777777777766643 122334454443
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.35 E-value=24 Score=33.77 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCC--
Q 006154 481 EGAVQVYENMKKVEKKPNLVIYNSIINGLCK--D----ASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGK-- 548 (658)
Q Consensus 481 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~-- 548 (658)
++.+.+++.+.+.|+.-+..+|.+..-.... . .....|..+++.|++..+. +-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556788899999998777776554333332 2 2356899999999998875 23334444322 3333
Q ss_pred --HHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006154 549 --IAEAFAMFSEMRNVGIAVNKV-GYNILINFLCKFG---CYQQARELMKVMILHGIIPDYVTYTTLVTR 612 (658)
Q Consensus 549 --~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 612 (658)
.+.++.+|+.+.+.|+..+.. -+.+-+-++.... ....+.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356778888888877765533 2222222222211 155788999999999999888877765543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.31 E-value=40 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcC
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGIDC---NVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEG 373 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g 373 (658)
+-+.+.+.+++|.++.+..... .| -......+|..+...|++++|-...-.|... +..-|..-+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 4445555666665554443322 22 2334555566666666666666666555543 4444444444444443
Q ss_pred C
Q 006154 374 D 374 (658)
Q Consensus 374 ~ 374 (658)
+
T Consensus 438 ~ 438 (846)
T KOG2066|consen 438 Q 438 (846)
T ss_pred c
Confidence 3
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.28 E-value=18 Score=32.14 Aligned_cols=167 Identities=14% Similarity=0.000 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-cCHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV-ENVNTF 219 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~ 219 (658)
..|.-+.+|+-|.--+...|+++.|.+.|+...+.++.-+-...|.-|.. .-.|++.-|.+-+.+.-+.+.. |-...|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 45667889999999999999999999999999988665444444444433 3467888888777766655321 212223
Q ss_pred HHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHhcccccCCc---CCChhhHHH
Q 006154 220 NLVIYALCKECKLEEALSLY-YRMLKSGIWPNVVCFNMIINEAC-QVGDLEFALKLFRKMGVMSGDSV---LPNSVTHNC 294 (658)
Q Consensus 220 ~~l~~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~ 294 (658)
--+. -+.-++.+|..-+ ++..+. |..-|...|..+. ..=..+.+.+-... ....+- ..-+.||--
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a---~a~~n~~~Ae~LTEtyFY 242 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKA---DATDNTSLAEHLTETYFY 242 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHh---hccchHHHHHHHHHHHHH
Confidence 2222 2334566665443 333332 4444444443332 11122222222222 111000 001345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
+.+-+...|+.++|..+|+-....
T Consensus 243 L~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 243 LGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 666666677777777766666543
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.20 E-value=14 Score=30.72 Aligned_cols=52 Identities=15% Similarity=-0.037 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++++++..++..+.-..|..+..-..-...+...|++++|..+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 6677777777777777666654444444555667777777777777776643
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.13 E-value=43 Score=36.29 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCcc--CHHhHHHHHHHHH-hcCCHhHHHHHHHHHHhCCCCcCH----
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKV-KGHSV--SIHAWNNFLSHLV-KLNEIGRFWKLYKEMVSCGYVENV---- 216 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~~--~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~g~~~~~---- 216 (658)
...-|..||.. |++.++.+.+ ..++| ...++..+...+. ...+++.|...+++....--.++.
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 33455555544 5666666663 22333 2345556666666 567889998888877643322221
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHH-HHHHHhcCCHHHHHHHHHHhcccccCCcCCChh
Q 006154 217 -NTFNLVIYALCKECKLEEALSLYYRMLKSG----IWPNVVCFNMI-INEACQVGDLEFALKLFRKMGVMSGDSVLPNSV 290 (658)
Q Consensus 217 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 290 (658)
.....++..+.+.+... |...+++.++.- ..+-...+..+ +..+...+++..|.+.++.+.........|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 12334556666665555 888887766531 11222233333 222333378888888888853333222333444
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHcC---------CCCChhhHHHHHHHHH--hcCChHHHHHHHHHHH
Q 006154 291 THNCIINGFC--KLGRVEFAEEIRYAMIKAG---------IDCNVRTYATLIDGYA--RGGSSEEALRLCDEMV 351 (658)
Q Consensus 291 ~~~~li~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 351 (658)
.+..++.+.. +.+..+++.+.++++.... ..|...++..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445554443 4455666766666663321 1345566666666554 4677666666655553
No 309
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.00 E-value=37 Score=36.30 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
+..|. .+..+.-.|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55555 788888889999999888543
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=6.7 Score=36.77 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 006154 495 KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY 571 (658)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 571 (658)
...+..+...++..-....+++.+...+-++...... ...+-...++.+ -.-++++++.++..-++.|+-||.+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3334444455555444556666666665555433211 111111122222 223667777777777788888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 572 NILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 572 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+++.+.+.+++.+|.++.-.|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888887777666543
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.74 E-value=1.4 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+...+...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.74 E-value=7.7 Score=33.81 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=46.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|..-..+..+.++....+...-..+|-+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 34556666666666666665421111 12233333444555555566555555555555544444444555555555
Q ss_pred HHHHHHHHHHHHHC
Q 006154 549 IAEAFAMFSEMRNV 562 (658)
Q Consensus 549 ~~~A~~~~~~~~~~ 562 (658)
+++|+.-|+++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555553
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.72 E-value=1.4 Score=25.65 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..|..+...+...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777888888888888887776
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.51 E-value=8.4 Score=29.43 Aligned_cols=47 Identities=4% Similarity=-0.047 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+-++.+...++.|++....+.+++|.+.+++..|+++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444445555566666666666666666666666666655543
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.45 E-value=3.5 Score=38.95 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 489 (658)
|.++|.+++|+..|...+.. .| +.+++..-..+|.+...+..|..-...
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 55555555555555544432 22 444444444455555555444443333
No 316
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.45 E-value=9.2 Score=33.38 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=36.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC
Q 006154 510 CKDASLDAAKSLLQASQRIGLL-----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGC 583 (658)
Q Consensus 510 ~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 583 (658)
.+.|++++|..-+..+....+. ....|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+|.+..+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 3444455555444444444433 12233333444444455555544444444432 21 1112222334444444
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|++=++++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554444
No 317
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.96 E-value=50 Score=35.82 Aligned_cols=412 Identities=12% Similarity=0.054 Sum_probs=190.8
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006154 129 LEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 208 (658)
.+-+...+..+++.|.....-..-+..+.+.+++....+.+. . .+.+...-.....+....|+.++|....+.+=
T Consensus 82 ~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 82 AVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334445555555555555555555556666666665555221 1 23455555666777777888777777777666
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHH-HHHHHhcccc--c
Q 006154 209 SCGYVENVNTFNLVIYALCKECKLEEA--LSLYYRMLKSGIWPNVVCFNMIINEACQV-GDLEFAL-KLFRKMGVMS--G 282 (658)
Q Consensus 209 ~~g~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~-~~~~~~~~~~--~ 282 (658)
..|. .....++.++..+.+.|.+... .+-++.+...| +...-..+...+... ...-++. .+...-.... .
T Consensus 157 ~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 157 LTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA 232 (644)
T ss_pred ccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh
Confidence 5552 3455677777777766655432 22233333332 222222233222100 0000011 1111000000 0
Q ss_pred CCcCCChhhHHHHHHHHH--hcCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 283 DSVLPNSVTHNCIINGFC--KLGRVEFAEEIRYAMIKAG-IDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 283 ~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
..++|+...-..++.++. ...+.+.|..++....... +.+. ..+...+.......+...+|...++...... .
T Consensus 233 ~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~ 310 (644)
T PRK11619 233 RTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--Q 310 (644)
T ss_pred hccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--C
Confidence 001122211111111221 2344566777777654332 2111 1223333333333332555666665543332 2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
|.......+......++++.+...+..|-... .-...-.--+.+++...|+.++|...|+.+... ...|..|..
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH
Confidence 33334444445557777777777777764422 223334445566666677777777777776431 112222221
Q ss_pred HHHhcCCH---HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 438 YLCKSNNL---AA--AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 438 ~~~~~~~~---~~--A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
.- .|.. .. ....-.. +..+. -..-+..+...|....|...+..+... .+......+...-.+.
T Consensus 385 ~~--Lg~~~~~~~~~~~~~~~~-----~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~ 452 (644)
T PRK11619 385 QR--LGEEYPLKIDKAPKPDSA-----LTQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQ 452 (644)
T ss_pred HH--cCCCCCCCCCCCCchhhh-----hccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Confidence 11 1111 00 0000000 00000 112234556778888888888887764 2444555555555677
Q ss_pred CCHHHHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH
Q 006154 513 ASLDAAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV 569 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 569 (658)
|.++.+............ .-+..|...+..+.+.-.++.++-.----.+.++.|+..
T Consensus 453 g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 453 QWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred CCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 777777665543222110 022345555555555555555443333334455555543
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.84 E-value=27 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHH
Q 006154 75 KLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLM 121 (658)
Q Consensus 75 ~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 121 (658)
.+|++.|-++..+.|-+. +-..++..+....+..+|...+...+
T Consensus 150 ~KA~ELFayLv~hkgk~v---~~~~~ie~lwpe~D~kka~s~lhTtv 193 (361)
T COG3947 150 RKALELFAYLVEHKGKEV---TSWEAIEALWPEKDEKKASSLLHTTV 193 (361)
T ss_pred hHHHHHHHHHHHhcCCcc---cHhHHHHHHccccchhhHHHHHHHHH
Confidence 678999998887665332 34566777777777777777666544
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.21 E-value=13 Score=28.42 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+.......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455666666677778888888888888888888888888888777665443335555543
No 320
>PRK09687 putative lyase; Provisional
Probab=86.20 E-value=32 Score=32.78 Aligned_cols=137 Identities=13% Similarity=-0.010 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING-KIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
+..+-...+.++.+.++. ++...+-.+.... +..+-...+.++...+ +...+...+..+.. .++...-...+.
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKDP--NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 445555556666555553 3444444443321 3334344444444332 13355555555554 345555666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777776 35555555555432 2 234566677777774 577777777753 456666666666654
No 321
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=9.3 Score=35.88 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=49.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---LIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNS 504 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 504 (658)
+..+...++..-....+++.++..+-++.... ..|+... .+.+.. +-.-++++++.++..=++.|+-||..+.+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444444444444555555555555544331 0111111 111221 223455566666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 505 IINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
+++.+.+.+++.+|..+...+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666555554443
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.97 E-value=5.3 Score=37.78 Aligned_cols=93 Identities=20% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI 549 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 549 (658)
...|.+.|.+++|+..|...... .| +++++..-..+|.+..++..|+.-.+.+...+..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 55677888888888888777664 33 7777777777888888888777776666665444455555555555566666
Q ss_pred HHHHHHHHHHHHCCCCCC
Q 006154 550 AEAFAMFSEMRNVGIAVN 567 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~ 567 (658)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 677666666666 3455
No 323
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=85.77 E-value=40 Score=33.56 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV 493 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 493 (658)
..|+.-|...|+..+|...++++--- +-.....+.+++.+.-+.|+-...+.+++..-..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34555566666666666666554321 1123455556666666666655555555555443
No 324
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=55 Score=35.06 Aligned_cols=101 Identities=13% Similarity=0.040 Sum_probs=59.4
Q ss_pred hCCCCcCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHhcccc
Q 006154 209 SCGYVENVNTFNL-----VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD--LEFALKLFRKMGVMS 281 (658)
Q Consensus 209 ~~g~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~ 281 (658)
..|++.+..-|.. +++-+...+.+..|+++-.-+-..-.. +...|..+..-+.+..+ -+++++-+++ ..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~---kl 500 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE---KL 500 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHH---Hh
Confidence 4566666555544 456677778888888887766432111 14455555555555422 2233333333 22
Q ss_pred cCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 282 GDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 282 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
.... -...+|..+.......|+.+-|..+++.
T Consensus 501 s~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 501 SAKL-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred cccC-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2222 3456788888888888999888887654
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.38 E-value=46 Score=33.89 Aligned_cols=92 Identities=15% Similarity=0.064 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
....+++..+..+-...-...+..+|+.-|- +-..|..++.+|... ..+.-..+|+++.+..+. |.+.-..|...|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 3344444444444444444444444444431 334444555555444 334444455544443321 233333333333
Q ss_pred HhcCChHHHHHHHHHHH
Q 006154 475 CKGGNIEGAVQVYENMK 491 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~ 491 (658)
-+ ++.+.+..+|.++.
T Consensus 143 Ek-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HH-hchhhHHHHHHHHH
Confidence 33 44445555554444
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.11 E-value=2.8 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555566666655555544
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.08 E-value=7.3 Score=34.50 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+..+.+.+.+.++....+.-.+..|.+...-..++..||-.|++++|..-++-.-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444555666667777776666666666666666677777777777777666665544
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.55 E-value=3 Score=25.61 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+++.+...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888999999999999999888764
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.46 E-value=13 Score=32.73 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 264 VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
..+.+++..++.+...+...+-.+|+..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444433233333334444444444444444444444
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.31 E-value=8.4 Score=34.14 Aligned_cols=78 Identities=18% Similarity=0.179 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 219 FNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 219 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
.+..++.+.+.+.+.+|+...++-++..+ -|..+-..++..+|-.|++++|..-++....+... ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~-~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ-DTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHH
Confidence 34455667777778888877777666532 25556667777788888888887777663222221 22334555555543
No 331
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.08 E-value=83 Score=35.07 Aligned_cols=116 Identities=9% Similarity=0.136 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC---CccCHHhHHHHHHHHHhcCCH--hHHHHHHHHHHhCCCCcCHHHHHH-
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKG---HSVSIHAWNNFLSHLVKLNEI--GRFWKLYKEMVSCGYVENVNTFNL- 221 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~- 221 (658)
-|..|+..|...|+.++|++++.+..... -..-...+..++..+.+.+.. +-+++.-+.............+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788999999999999999999887732 111223444566666666655 666666666665431111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 222 -----------VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ 263 (658)
Q Consensus 222 -----------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 263 (658)
.+-.++.....+-++.+++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 223455666777888888888766555566777777777765
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=22 Score=36.75 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
-+.+++.+.++|-.++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 445666666677666666543 222211 223345677777776665542 55667778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.+++..|.+.|.+... |..|+-.+...|+.+.-..+-....+.|. .|...-+|...|+++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 679 AGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred cccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 8888888877775443 45566666667776655555555555542 122334566778888777776
Q ss_pred HHH
Q 006154 592 KVM 594 (658)
Q Consensus 592 ~~~ 594 (658)
..-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
No 333
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.79 E-value=63 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=29.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVE 376 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~ 376 (658)
..+.++...+++..+...|.....+.+|.....|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 46677888888888877776666666777777777776543
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.73 E-value=1.9 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 006154 148 VFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456667777777777776664
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.58 E-value=17 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
++|...|++..+ ..|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 444445555544 245555555444443
No 336
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=83 Score=33.76 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 283 DSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKA 318 (658)
Q Consensus 283 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 318 (658)
....|| |..+.++|.-..+.+.+.++++++.+.
T Consensus 207 ~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 207 KLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred cCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 334455 455677888888999999999888874
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.87 E-value=61 Score=32.02 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
...+|..++..+.+.|.++.|...+..+...+... .+...-.-...+...|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777777788887777777776643111 222333334555667777777777776665
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.56 E-value=3.7 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 574 LINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666655555543
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.29 E-value=52 Score=30.87 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+.....|..+|.+.+|.++-+..+..+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455556666666666666665543 3445555566666666666555555555544
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.90 E-value=34 Score=28.51 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=54.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGY-NILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
...++.+++..+++.|.-. .|+..-. ..-...+...|++++|+++|++..+.+. ....-..|...|.+...-..-
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCChHH
Confidence 3478999999999999873 4543322 2224457789999999999999987642 222223344334333222333
Q ss_pred HHHHHHHHHCCCCCCH
Q 006154 623 IELHDDMVLSGVSPDN 638 (658)
Q Consensus 623 ~~~~~~m~~~g~~p~~ 638 (658)
...-+++++.|-+|+.
T Consensus 97 r~~A~~~le~~~~~~a 112 (153)
T TIGR02561 97 HVHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHHhCCCHhH
Confidence 4444455555444444
No 341
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.48 E-value=43 Score=30.41 Aligned_cols=119 Identities=8% Similarity=-0.024 Sum_probs=69.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 552 (658)
|.....++.|+..|.+.+.. .|+.. -|+.=+..+.+..+++.+..--.+..+..+..+.....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 44556677777777666653 44543 3344455556677777777666666666665556666666777777777777
Q ss_pred HHHHHHHHH----CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 553 FAMFSEMRN----VGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 553 ~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
+..+.+... ..+++-......|..+--+.=...+..++.+..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777777632 223333444445544433333444455444443
No 342
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.34 E-value=68 Score=31.67 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=90.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCChhhHHHHHHHHH
Q 006154 365 TIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM----VGDAYSYNILINYLC 440 (658)
Q Consensus 365 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 440 (658)
...+..+.|+++...+........ .++...+..+... ..++.+++....+.....-. ......|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 346677888888855444444321 2344455554433 77888888887776655311 012223333333344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCChHHHHHHH---HHHHhC--CCCCCHHHHHHHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK-----GGNIEGAVQVY---ENMKKV--EKKPNLVIYNSIINGLC 510 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-----~g~~~~A~~~~---~~~~~~--~~~~~~~~~~~l~~~~~ 510 (658)
+...+.+..++.+-..... .+......++..... ..+++.-..++ ..+.+. .......++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4344444333333322210 112222333332221 11222111111 111110 01223345666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+.|.++.|...+..+...... .+.....-+......|+..+|+..++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777766666654422 334444445556666676777766666655
No 343
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=79.04 E-value=58 Score=30.71 Aligned_cols=20 Identities=25% Similarity=0.609 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A 483 (658)
..+|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566677777777766543
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.90 E-value=54 Score=30.25 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHhcccCCCCC--CHHhHHHHHHHHHcCCCchHHHHHHHHHH
Q 006154 73 SPKLALEFYTWVGENNRFSH--SLESSCAIVHLLVNWRRFDDALLLMGNLM 121 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 121 (658)
+|+.|+.-|..+....|-.. ...+.-.++.+..+.+++++....+.+++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 68888888888876554333 24567788888888898888877776665
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.83 E-value=26 Score=26.57 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
+.=++.+-++.+......|++.+..+.+++|.+.+++..|.++++.++.+...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 33455666666666777788888888888888888888888888877644332333444443
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.29 E-value=6 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566667777777777777777766653
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.99 E-value=7 Score=22.58 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555555544
No 348
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.93 E-value=85 Score=32.01 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=77.2
Q ss_pred HHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHHc
Q 006154 522 LQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC---KFGCYQQARELMKVMILH 597 (658)
Q Consensus 522 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 597 (658)
+......+.. ....-+.++..+.+.|-.++|...+..+... .+|+...|..+++.-. .+| ..-+.++++.|...
T Consensus 448 i~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 448 ISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE 525 (568)
T ss_pred HHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH
Confidence 3344444444 4445567888888899999999999999886 4667777777775432 233 77788888888854
Q ss_pred -CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 598 -GIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 598 -g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
| .|+..|...+..-...|..+.+-.++.++.+.
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 5 57888888887777889998888887777653
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.84 E-value=5.9 Score=25.00 Aligned_cols=25 Identities=32% Similarity=0.613 Sum_probs=16.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKG 176 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g 176 (658)
|.++|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777666543
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.55 E-value=3.9 Score=22.17 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=6.5
Q ss_pred HHHHHhcCCHHHHHHH
Q 006154 575 INFLCKFGCYQQAREL 590 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~ 590 (658)
...+...|++++|..+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3334444444444433
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.87 E-value=19 Score=28.72 Aligned_cols=47 Identities=4% Similarity=0.020 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+-+......++.|++.....-+++|.+.+++..|.++|+-.+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455555566667666666677777777777777777666654
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.03 E-value=4.8 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 150 DALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
..+..++.+.|++++|.+.|+++.+.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556666666777777776666654
No 353
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.73 E-value=72 Score=30.07 Aligned_cols=51 Identities=6% Similarity=0.010 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCCH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNV-GIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
.+...++..+++.+++.+-.++++..... +..-|...|..+|+.....|+.
T Consensus 203 ~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 203 NVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 33333344444444444444444333322 2222333344444444444443
No 354
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.51 E-value=1.1 Score=37.58 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
++..+.+.+.++.+.++++.+...+...+....+.++..|++.+..+...++++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3444555566666666666666555444556666666666666555555554441 111222334444555555
Q ss_pred HHHHHHHHHH
Q 006154 232 LEEALSLYYR 241 (658)
Q Consensus 232 ~~~A~~~~~~ 241 (658)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.01 E-value=6.2 Score=22.51 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=9.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 356
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.77 E-value=1e+02 Score=31.43 Aligned_cols=242 Identities=10% Similarity=0.133 Sum_probs=128.0
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCChHHHH
Q 006154 343 ALRLCDEMVKRGLMPNNVVYNSTIHWLFAE------GDVEGALFVLSDMIDKH-ICP-DHFTYSILTKGLCRNGCVKQAF 414 (658)
Q Consensus 343 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~ 414 (658)
...+|++..+- .|+...|+..|..+... ..+.....+++...+.+ ..+ ....|..+.-.++......
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r--- 375 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR--- 375 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---
Confidence 33555555543 34555565555544322 23444555566555432 222 3344555555555544322
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHH--HHHHH
Q 006154 415 KLHNQVLEEHMVGDAYSYNILINYLCKS-NNLAAA-KQLLSSMIVRGLIPDIITYGTLIDGYCKGGN-IEGAV--QVYEN 489 (658)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~--~~~~~ 489 (658)
..-..+...+...+...|..-+....+. .+.+-- ..++......-..+....|+... .|+ .+... .++..
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 2222222222333555555544444422 122211 12222232221122223333222 122 22211 22333
Q ss_pred HHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHH-CCCC
Q 006154 490 MKKVEKKPNLVI-YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN--GKIAEAFAMFSEMRN-VGIA 565 (658)
Q Consensus 490 ~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~-~~~~ 565 (658)
.... ..|+..+ -+.+++.+.+.|-..+|...+..+....|.+...|..++..-... -+..-+..+|+.|.. .|
T Consensus 451 ~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 451 LLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 3333 2344444 356777778889999999999999999888888888887653221 236777888888865 45
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.|+..|...+.--...|..+.+-.++.++...
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 67777777776666888888888877776653
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.27 E-value=45 Score=31.08 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVR--GLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC--- 510 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 510 (658)
|.+++..+++.++....-+--+. .++|. ....-|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55666666666665544333322 12222 223333445666666666665555444322222333555444443
Q ss_pred --hcCCHHHHHHHH
Q 006154 511 --KDASLDAAKSLL 522 (658)
Q Consensus 511 --~~g~~~~a~~~~ 522 (658)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 356666666555
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.45 E-value=1.1e+02 Score=31.12 Aligned_cols=36 Identities=8% Similarity=-0.082 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
|...|++-.|.+.|.+.......++..|..|..+|.
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445566666666666665555556666666655554
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.82 E-value=1.5e+02 Score=32.23 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC-------HhHHHHHHHHHHhCCCCcCHH---H
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNE-------IGRFWKLYKEMVSCGYVENVN---T 218 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~g~~~~~~---~ 218 (658)
.-.+|--+.|.|.+++|.++.....+. .......+-..+..|....+ -+....-|++..+.....|++ .
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 445677788999999999999555443 44455667777887766432 235566666666553322443 2
Q ss_pred HHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCCh
Q 006154 219 FNLVIYALCKECK---------LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNS 289 (658)
Q Consensus 219 ~~~l~~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 289 (658)
|..+ +.|...+ .|+-+-+--.+.+.....+...+ ..-.+++-.+.+.+ .-+.-+.+ .
T Consensus 193 Y~il--g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~---~Ge~~F~~-~ 258 (613)
T PF04097_consen 193 YKIL--GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILK---YGESHFNA-G 258 (613)
T ss_dssp HHHH--HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHH---H-GGGCTT--
T ss_pred HHHH--hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHH---hchhhccc-c
Confidence 3333 1111100 01111000001111110000000 00011222222222 12222222 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCcHhHHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRG-LMPNNVVYNSTIHW 368 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~ll~~ 368 (658)
.........+.-.|+++.|.+.+-+. .+...+.+.+...+..|.-.+-.+... ..+.... -.|....+..||..
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~ 333 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ 333 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence 11223345566789999999888772 122445555555544433222111111 2222211 01122567788888
Q ss_pred HHhc---CCHHHHHHHHHHHHhC
Q 006154 369 LFAE---GDVEGALFVLSDMIDK 388 (658)
Q Consensus 369 ~~~~---g~~~~a~~~~~~~~~~ 388 (658)
|++. .+..+|++++--+...
T Consensus 334 Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 334 YTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHhccCHHHHHHHHHHHHHc
Confidence 8763 5778888888777654
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.35 E-value=41 Score=25.72 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=20.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+.|++++|..+.+.. +.||...|-+|. -.+.|-.+++..-+-+|-..
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 44445555555444333 234444443332 23444444444444444433
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.23 E-value=1.1e+02 Score=30.48 Aligned_cols=119 Identities=8% Similarity=-0.032 Sum_probs=81.6
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHH--------HhhccCCCCCHHHHHHH---HHHHHhc
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGL--------LDSYEICKATPAVFDAL---VRACTQI 159 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~l---~~~~~~~ 159 (658)
+.-.+++..+..++...|+.+.|..++++++---+..-...|..+ ....-..+.|...|.++ +....+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 455778999999999999999999999987642100001111110 00001223455556555 5577888
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-hcCCHhHHHHHHHHHHh
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLV-KLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~ 209 (658)
|-+.-|.++.+-+...++.-|+.....+|+.|+ +.++++-.+++++....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 999999999999999887778887778888774 67788888888887655
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.47 E-value=93 Score=29.39 Aligned_cols=117 Identities=9% Similarity=0.116 Sum_probs=68.2
Q ss_pred cCCHHHHHHHHHHhccccc-CCcCCChhhHHHHHHHHHh-cC-ChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCC
Q 006154 264 VGDLEFALKLFRKMGVMSG-DSVLPNSVTHNCIINGFCK-LG-RVEFAEEIRYAMIKA-GIDCNVRTYATLIDGYARGGS 339 (658)
Q Consensus 264 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~ 339 (658)
+..+.+|+++|+. ... ..+--|......+++.... .+ ....-.++.+-+... +-.++..+...++..++..++
T Consensus 141 N~~Vv~aL~L~~~---~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~d 217 (292)
T PF13929_consen 141 NKIVVEALKLYDG---LNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRD 217 (292)
T ss_pred hHHHHHHHHHhhc---cCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhccc
Confidence 3445667777764 111 1233455555556655554 11 222233333333322 335667777777778888888
Q ss_pred hHHHHHHHHHHHHC-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 340 SEEALRLCDEMVKR-GLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383 (658)
Q Consensus 340 ~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 383 (658)
+.+-.++++..... +..-|...|..+|+...+.|+..-...+..
T Consensus 218 W~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 218 WNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88877777776554 455577777777777777777665544443
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.42 E-value=2.7e+02 Score=34.80 Aligned_cols=152 Identities=9% Similarity=0.028 Sum_probs=97.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGH--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
++.++-.+.|.+.+|.-.++.-..... ......+..+...|...++++....+...-.. .|+ .+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 677788889999999999998411111 11223344445589999999988888775222 132 233 3345567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHH-HHHHHHhcCChHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNC-IINGFCKLGRVEF 307 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~ 307 (658)
.|++..|...|+.+.+.+. +...+++.++......|.++......+-. .. ...+....++. -+.+--+.++++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~---~~-~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGL---II-NRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcch---hh-ccCHHHHHHHHHHHHHHhhhcchhh
Confidence 8999999999999998742 23667888888777888888887766652 21 12223333332 3344467777777
Q ss_pred HHHHHH
Q 006154 308 AEEIRY 313 (658)
Q Consensus 308 A~~~~~ 313 (658)
.+..+.
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 666554
No 364
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.32 E-value=3.1 Score=34.85 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006154 187 FLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD 266 (658)
Q Consensus 187 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 266 (658)
++..+.+.+.++.....++.+...+...+....+.++..|++.+..++..++++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555556667777777777777655455667777777777777666666666551 122333455566666666
Q ss_pred HHHHHHHHHH
Q 006154 267 LEFALKLFRK 276 (658)
Q Consensus 267 ~~~A~~~~~~ 276 (658)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 365
>PRK09687 putative lyase; Provisional
Probab=71.24 E-value=97 Score=29.52 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=32.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
+..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.
T Consensus 205 ~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred ChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 34444444444555544 23444444443321 1 122444555555553 455555555542 234444444444
Q ss_pred HH
Q 006154 612 RF 613 (658)
Q Consensus 612 ~~ 613 (658)
++
T Consensus 276 a~ 277 (280)
T PRK09687 276 KL 277 (280)
T ss_pred HH
Confidence 43
No 366
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=1e+02 Score=29.60 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCChHHHHHHH-HHHHhcCCHHHH
Q 006154 515 LDAAKSLLQASQRIGL-L-DAITYNTLINGYFINGKIAEAFAMFSEMR----NVGIAVNKVGYNILI-NFLCKFGCYQQA 587 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l~-~~~~~~g~~~~A 587 (658)
+++-.+..+++.+..- . -..++-....-||+.|+.+.|++.+.+.. ..|.+.|+..+.+-+ -.|....-+.+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 3444444444444311 1 44556666777788888887777666553 345666655444322 233333335555
Q ss_pred HHHHHHHHHcCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 588 RELMKVMILHGIIPDYV----TYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
++-.+.+.+.|-.-+.. +|..+- |....++++|-.+|-+....
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 66666666666544432 233222 33446777777777665543
No 367
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.35 E-value=1.3e+02 Score=30.53 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.+..|.........+...|.++.+.+.+...... +.....+...+++...+.|+++.|..+-+.|+...++. ......
T Consensus 319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~-~ei~~i 396 (831)
T PRK15180 319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIED-EEVLTV 396 (831)
T ss_pred CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCC-hhheee
Confidence 3444555555667778899999999998776553 23355677889999999999999999999999876643 333322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
....--..|-++++.-.++++...+.+
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 222233457788999889888766443
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.96 E-value=1.8e+02 Score=32.16 Aligned_cols=226 Identities=14% Similarity=0.049 Sum_probs=119.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-------hHHHHH-HHHHhcCChHHHHHHHHHHHHC----CCCCcHhHHHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMIKAGIDCNVR-------TYATLI-DGYARGGSSEEALRLCDEMVKR----GLMPNNVVYNSTI 366 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~ll 366 (658)
.....++++|..++.++...-..|+.. .++.|- ......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999888887653233222 222222 2234578888888888777654 2334556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHhcCChH--HHHHHHHHHHHcCC---C---CChhhHH
Q 006154 367 HWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILT-----KGLCRNGCVK--QAFKLHNQVLEEHM---V---GDAYSYN 433 (658)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~--~a~~~~~~~~~~~~---~---~~~~~~~ 433 (658)
.+..-.|++++|..+..+..+..-.-+...+.... ..+...|+.. +....+........ . +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888899999988877766542222333332222 2344566332 22333333322211 0 1223444
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHH
Q 006154 434 ILINYLCKS-NNLAAAKQLLSSMIVRGLIPDIITY--GTLIDGYCKGGNIEGAVQVYENMKKVEKKP----NLVIYNSII 506 (658)
Q Consensus 434 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~ 506 (658)
.++.++.+. +...++..-+.-.......|-.... ..|+......|+.++|...+.++......+ +.......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 445555441 1122222222222222222222222 356777788999999999988887543332 222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 006154 507 NG--LCKDASLDAAKSLLQA 524 (658)
Q Consensus 507 ~~--~~~~g~~~~a~~~~~~ 524 (658)
.. ....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2356777777766655
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.25 E-value=70 Score=29.92 Aligned_cols=87 Identities=8% Similarity=-0.035 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK---- 441 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 441 (658)
|.+++..+++.+++.+.-+--+..-+........-|-.|.+.++...+.++-...+...-+-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544433333222222333344444555666666666666555554333333345554444433
Q ss_pred -cCCHHHHHHHH
Q 006154 442 -SNNLAAAKQLL 452 (658)
Q Consensus 442 -~~~~~~A~~~~ 452 (658)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.73 E-value=24 Score=36.37 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=52.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.|+...|...+.......+.-..+....|.+...+.|....|..++.+........+.++..+.++|....+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 46666666666555543332233344455555556666666666666666655446666666677777777777777777
Q ss_pred HHHHHC
Q 006154 557 SEMRNV 562 (658)
Q Consensus 557 ~~~~~~ 562 (658)
+++.+.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 766664
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.66 E-value=99 Score=28.62 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=28.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 302 LGRVEFAEEIRYAMIKAGIDCNV---RTYATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 302 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
...+++|..-|++..+..-.... .....++..+.+.+++++....|.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34666777777776654212222 233345566666666666666666654
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.29 E-value=22 Score=25.81 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChHHHHHH
Q 006154 580 KFGCYQQARELMKVMILHGIIPD--YVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
...+.++|+..|....+.-..|. ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554321111 11334444455555555554443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.28 E-value=20 Score=25.97 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=32.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
...+.++|+..|...++.-..|. ..++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888876432222 3456777888888888888776643
No 374
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.28 E-value=16 Score=36.68 Aligned_cols=104 Identities=17% Similarity=0.108 Sum_probs=69.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNS-IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
.+.+.+.++.|+.++.++++. .|+...|-+ -..++.+.+++..|..-+..+.+..+.....|.--+.++.+.+++.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 344567777888888777774 444443322 23566777777777777777777776666666666677777777888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
|+..|+.... +.|+..-....++-|-+
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 8888777776 46776666666555443
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.94 E-value=39 Score=34.96 Aligned_cols=114 Identities=14% Similarity=0.014 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNIL 574 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 574 (658)
.|--...+...-.+...|+...|.+.+..+....|. ..+....|.....+.|-...|..++.+.+... ...+.++-.+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 333333333333344578999999999988877776 55666677778888888888988888887754 4456777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
.+++....+++.|++.|+++.+.. +-+...-+.|..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHH
Confidence 999999999999999999988753 223444444433
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.74 E-value=1.2e+02 Score=28.34 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-------HHHHHHHHhcCCHHHHH
Q 006154 400 LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSY-------NILINYLCKSNNLAAAK 449 (658)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~ 449 (658)
+.+-..+.+++++|+..+.+++..|...+..+. ..+...|...|+...-.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 344455666777777777777776666555433 23344455555544433
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.69 E-value=23 Score=23.46 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 33445555555555555555555
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.28 E-value=1.5e+02 Score=29.01 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH---cCCHHHHHHHHH
Q 006154 481 EGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI---NGKIAEAFAMFS 557 (658)
Q Consensus 481 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 557 (658)
+.-+.+++++.+.+. .+......++..+.+..+.+...+.++++....+.+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 344455555555532 3455555666666666666666666666666666666666666654433 123444444444
Q ss_pred HHHH------CCC------CCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 558 EMRN------VGI------AVN-----KVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 558 ~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
+.++ .+. .++ ...+.-+...+.++|..+.|..+++-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4322 110 011 11223344455688899999999988887654
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.90 E-value=25 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|..---.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444566666666666666666666554
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.89 E-value=15 Score=19.99 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006154 573 ILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 573 ~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+...+...|++++|...+++.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444433
No 381
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.44 E-value=1.8e+02 Score=29.64 Aligned_cols=11 Identities=0% Similarity=0.156 Sum_probs=5.0
Q ss_pred HHHHHHHHHHC
Q 006154 552 AFAMFSEMRNV 562 (658)
Q Consensus 552 A~~~~~~~~~~ 562 (658)
..+-.+.|...
T Consensus 299 C~~ei~~mk~~ 309 (413)
T PHA02875 299 CIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHhh
Confidence 34444445443
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.26 E-value=1.8e+02 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=8.7
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 006154 258 INEACQVGDLEFALKLFR 275 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~ 275 (658)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333445555555544444
No 383
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.06 E-value=1.3e+02 Score=27.84 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHH
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK-GGNIEGAVQVYENMK 491 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~ 491 (658)
.++...-+.++++++...++++...+...+..-.+.+..+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455666677777777777777776666666666666555532 344455555555444
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=2.6e+02 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=21.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
|......+-+...++.+....-.++..-.+.++..|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455556666666666665544445555555555554
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.65 E-value=33 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=19.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 614 SKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
.+.|-.+++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666666555554
No 386
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.55 E-value=2.3e+02 Score=30.71 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=9.8
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQA 524 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~ 524 (658)
.-+...|++++|..+++.
T Consensus 422 ~~~e~~g~~~dAi~Ly~L 439 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHL 439 (613)
T ss_dssp HHHHHCT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 334556666666666553
No 387
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.01 E-value=1.9e+02 Score=29.43 Aligned_cols=122 Identities=11% Similarity=0.002 Sum_probs=70.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKL 232 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 232 (658)
|.--...|+...|-+-+....... +.++........+....|.++.+...+....+. +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 334445566666554443333321 223333333344556678888887777655432 233455677777777788888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
++|...-+-|+...++ +...........-..|-++++.-.++++
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 8888888877776655 3333333333334456677777777773
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.69 E-value=60 Score=26.11 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 483 AVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 483 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
..+.++.+....+.|++.+....+.+|.+.+++..|.++|+.++.+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3444555556667777777777777777777777777777777665443
No 389
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=61.10 E-value=22 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.0
Q ss_pred hhhhhCCCCCHHHHHHHHHhcCCChHHHHHHH
Q 006154 50 ILEQMAPSLTNSLVNRVVSEFRKSPKLALEFY 81 (658)
Q Consensus 50 ~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f 81 (658)
-|.+..|+-.++.+..+|..+.+|.-+|++.|
T Consensus 7 iL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 7 ILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 35667788888999999999999999998865
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.00 E-value=1.3e+02 Score=27.45 Aligned_cols=117 Identities=16% Similarity=0.035 Sum_probs=76.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIIT-YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLD 516 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 516 (658)
|.....++.|+..+.+.+.. .|+..+ |+.-+-.+.+..+++.+.+--...++ +.|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 55667889999988887775 466544 45566677888999998887777776 455554 3445556667788999
Q ss_pred HHHHHHHHHHHcCC----C-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGL----L-DAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 517 ~a~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
+|...+++...... . -..+...|..+--+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999998854332 2 3445555555443333444555555544
No 391
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.38 E-value=1.5e+02 Score=27.87 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=53.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMR----NVGIAVNKVGYN-ILINFLCKFGCYQQARELMKVMILHGIIPDYVT- 605 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~- 605 (658)
-..++..+..-|++.++.+.+.+...+.. ..|.+.|..... -|.-.|....-+++-++..+.|.++|-.-+...
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 45666777777777777777766655543 345554443222 222233344446677777777777765433221
Q ss_pred HHHHHHH-HHhCCChHHHHHHHHHHHH
Q 006154 606 YTTLVTR-FSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 606 ~~~l~~~-~~~~g~~~~A~~~~~~m~~ 631 (658)
|...-.. +....++++|-.++-+...
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 1111111 2234566777666666554
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.93 E-value=2.3e+02 Score=29.74 Aligned_cols=169 Identities=13% Similarity=-0.000 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHhcccCC----------CCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhc---
Q 006154 73 SPKLALEFYTWVGENNR----------FSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSY--- 139 (658)
Q Consensus 73 ~~~~al~~f~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 139 (658)
..++|..-|..+..... .+.-.++...+++++...|+.+-|..++++.+-- -...++-.....
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~----~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYV----FDRALHPNFIPFSGN 328 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH----HHHHhcccccccccc
Confidence 46677777776654321 1223567888999999999999998888776531 011111111110
Q ss_pred ----cCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHH-hcCCHhHHHHHHHHHHhCC
Q 006154 140 ----EICKATPAVFDAL---VRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLV-KLNEIGRFWKLYKEMVSCG 211 (658)
Q Consensus 140 ----~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~g 211 (658)
-..+.|...|.++ +....+.|-+.-|+++-..+.+..+.-|+.....+|..|+ +.+++.-.+++++......
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 0223444445444 4566788999999999999999887778888888999885 6678888888887775332
Q ss_pred ---CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC
Q 006154 212 ---YVENVNTFNLVIYALCKECK---LEEALSLYYRMLKS 245 (658)
Q Consensus 212 ---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~ 245 (658)
.-||-..-.++...|.+... .+.|...+.+..+.
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 23443333344444544433 34566666666554
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.32 E-value=24 Score=35.51 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=80.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCH
Q 006154 506 INGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCY 584 (658)
Q Consensus 506 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 584 (658)
+..+.+.+.++.|..++.++.+..+..+..|..-..++.+.+++..|+.=+.++++.. |+ ...|---..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3445567889999999999999988877778777788999999999998888888854 43 33344445566777788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
.+|...|+.... +.|+..-....+.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 888888888776 57887777777766543
No 394
>PRK10941 hypothetical protein; Provisional
Probab=58.12 E-value=1.6e+02 Score=27.84 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+.+-.+|.+.++++.|.++.+.+....|.++.-+.--+-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556667777777777777777777777777776777777777777777777776653
No 395
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.92 E-value=1.9e+02 Score=28.23 Aligned_cols=119 Identities=8% Similarity=0.029 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh---cCCHHHHHHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK---FGCYQQARELM 591 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 591 (658)
.+.-..+++++.+.++.+...+..++..+.+..+.++..+.++++.... +-+...|...++.... .-.++....+|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3566788899888888899999999999999999999999999998863 3356677777765554 22466666666
Q ss_pred HHHHHc------CC------CCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006154 592 KVMILH------GI------IPD-----YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGV 634 (658)
Q Consensus 592 ~~~~~~------g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 634 (658)
.+.+.. |. .++ ...+..+...+..+|..+.|+.+++.+.+-.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 655432 11 011 11223333445679999999999999998744
No 396
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.37 E-value=87 Score=24.09 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 259 NEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRT 326 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 326 (658)
..+...|++++|..+.+. . ..||...|..+.. .+.|.-+++..-+.++...| .|....
T Consensus 47 sSLmNrG~Yq~Al~l~~~---~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~ 104 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNK---L----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQT 104 (115)
T ss_pred HHHHccchHHHHHHhcCC---C----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHH
Confidence 345556777777766555 2 3566666655443 35566666666666666555 444333
No 397
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.34 E-value=1.5e+02 Score=27.42 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh-cCCHhHHHHHHHHHHh
Q 006154 150 DALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK-LNEIGRFWKLYKEMVS 209 (658)
Q Consensus 150 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~ 209 (658)
..+++.+-+.|+++++.+.+.++.+.+...+..--|.+-.+|-. .|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34677788899999999999999999888888777777766632 3455566666666554
No 398
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.94 E-value=83 Score=23.73 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCC
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGC 583 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 583 (658)
++.....+|.|...-..+...+...|++++|++.+-++.+..... +...-..|+..+...|.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344445556677777777777777777777777777776643222 22333444444444444
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.15 E-value=83 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666554
No 400
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.10 E-value=1.6e+02 Score=26.86 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=30.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHh--cCCHHHHHHHHHHHHHcCCC
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNS----IINGLCK--DASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~--~g~~~~a~~~~~~~~~~~~~ 531 (658)
...+++.+|+.+|+++.......+..-|.. +-.++|. ..+.-.+...+++..+..|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 456778888888888776544433322221 1111121 24455556666666666665
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.97 E-value=47 Score=21.44 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=18.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006154 157 TQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLS 189 (658)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 189 (658)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666655555554443
No 402
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.36 E-value=1.9e+02 Score=27.99 Aligned_cols=90 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCChHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRN---VGIAVNKVGY--NILINFLCKFGCYQQARELMKVMIL-----HGIIPDYV 604 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~ 604 (658)
....++...-+.++.++|++.++++.+ ..-.|+.+.| ...+.++...|+..++.+++....+ .|++|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Q ss_pred HHHHHHHH--HHhCCChHHHHH
Q 006154 605 TYTTLVTR--FSKNCSPEEVIE 624 (658)
Q Consensus 605 ~~~~l~~~--~~~~g~~~~A~~ 624 (658)
+---.++. |...|++....+
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
No 403
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.16 E-value=35 Score=23.54 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 006154 329 TLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 329 ~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 404
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=55.14 E-value=2e+02 Score=27.52 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH
Q 006154 583 CYQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 583 ~~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
+...|...+......|........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~ 275 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEAL 275 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHH
Confidence 445555555555554444333333
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.06 E-value=14 Score=29.91 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=23.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 006154 613 FSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPL 648 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 648 (658)
....|.-.+|..+|++|++.|-+||. |+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456667788888888888877774 66666543
No 406
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.64 E-value=2e+02 Score=27.46 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---------
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC--------- 617 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--------- 617 (658)
.|...+.++...+ +......+...|.. ..+..+|...|++.-+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666666554 33333334433332 2256667777776666653 22222222 333333
Q ss_pred ------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 618 ------SPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 618 ------~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
+...|..++......|.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7778888888888877666666666
No 407
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.52 E-value=2.5e+02 Score=28.32 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
..|+.-|...|++.+|..+++++--........+.+++.+.-+.|+...-+.+++..-..| ..|-+.|-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 4567777888888888887776544433466778888888888888777777777776654 3344555555544
No 408
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.25 E-value=2e+02 Score=27.05 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=70.6
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHH----HhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEM----VSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
+++++++|.+++..-- ..+.+.|+...|-++-..+ .+.+.+.|......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4566777777665432 2244455554443333332 23455555555455555444333211
Q ss_pred -HHHHHHHHHHh---CC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHH
Q 006154 234 -EALSLYYRMLK---SG--IWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEF 307 (658)
Q Consensus 234 -~A~~~~~~m~~---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 307 (658)
+-.++.+.+++ .| ..-+......+...|.+.|++.+|...|-. . -.|+...+..++......|...+
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-----~--~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL-----G--TDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT-----S---HHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh-----c--CChhHHHHHHHHHHHHHhcCCcc
Confidence 12222222221 11 223455667777888888888888887743 1 11222222223333333333332
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006154 308 AEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR 353 (658)
Q Consensus 308 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (658)
+ +...-.. +-.|...++...|...++...+.
T Consensus 140 ~--------------dlfi~Ra-VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 A--------------DLFIARA-VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp H--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred h--------------hHHHHHH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 1222222 22355667778787777666543
No 409
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.57 E-value=3.3e+02 Score=29.29 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 216 VNTFNLVIYALCKECKLEEALSLYYR 241 (658)
Q Consensus 216 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 241 (658)
...|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45555 34455556777777776633
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.43 E-value=35 Score=18.97 Aligned_cols=24 Identities=4% Similarity=0.002 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNT 538 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~ 538 (658)
.+.|..+|+++....+.+...|..
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHH
Confidence 344444444444444334444433
No 411
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.89 E-value=1e+02 Score=23.25 Aligned_cols=55 Identities=20% Similarity=0.097 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc-CHHhHHHHHHHHHhcC
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSV-SIHAWNNFLSHLVKLN 195 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g 195 (658)
..|.+...-..+...+...|++++|++.+-.+.+..... +...-..|+..+.-.|
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 456677888888888888888888888888887764332 2333344444444444
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.06 E-value=1.2e+02 Score=23.74 Aligned_cols=14 Identities=0% Similarity=-0.322 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHhC
Q 006154 197 IGRFWKLYKEMVSC 210 (658)
Q Consensus 197 ~~~a~~~~~~~~~~ 210 (658)
.++|..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444443
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.63 E-value=1.1e+02 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666666554
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.30 E-value=37 Score=30.12 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=46.9
Q ss_pred cCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHh
Q 006154 70 FRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMS 122 (658)
Q Consensus 70 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~ 122 (658)
...++.....+.+|+.+.-.+.|++..|...+.++...|+.++|...+.++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888899988777889999999999999999999999999988875
No 415
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=50.24 E-value=43 Score=20.75 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.8
Q ss_pred hhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHH
Q 006154 49 KILEQMAPSLTNSLVNRVVSEFRKSPKLALEFY 81 (658)
Q Consensus 49 ~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f 81 (658)
..|..+.|.++++.+..+|....++.+.|....
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457788999999999999998888888887643
No 416
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=49.88 E-value=45 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.0
Q ss_pred hhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHH
Q 006154 49 KILEQMAPSLTNSLVNRVVSEFRKSPKLALEFY 81 (658)
Q Consensus 49 ~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f 81 (658)
..|..+.|.++...+..+|....++.+.|...+
T Consensus 7 ~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 7 HDLKDMFPNLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457788999999999999998888888887654
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.05 E-value=1.2e+02 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+.......|++++|.+.+++.+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455566666666655554
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.05 E-value=85 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 565 AVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666666666666666666665
No 419
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.92 E-value=2.2e+02 Score=25.86 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=14.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC
Q 006154 610 VTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 610 ~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.....+.|+.++|.++|.++...
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcC
Confidence 33455667777777777777665
No 420
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.73 E-value=2.2e+02 Score=26.00 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhc-CCCChHHHHHHHHhhccCC
Q 006154 64 NRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSA-NSVSPLEFLEGLLDSYEIC 142 (658)
Q Consensus 64 ~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 142 (658)
+.+|+-.+-+....+.-..-+.+..+.+.+.+...+++ +...|+..+|...++.-... +.+....+|. .+
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfK-------v~ 234 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFK-------VC 234 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhh-------cc
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006154 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNF 187 (658)
Q Consensus 143 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 187 (658)
.......-.-+-.++..+++++|.+.+.++.+.|+.|....-+..
T Consensus 235 d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred CCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.46 E-value=1.4e+02 Score=23.42 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=5.9
Q ss_pred hcCCHHHHHHHHHHH
Q 006154 580 KFGCYQQARELMKVM 594 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~ 594 (658)
+.|-.+++...+.++
T Consensus 81 klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 81 KLGLASALESRLTRL 95 (116)
T ss_dssp HCT-HHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH
Confidence 444444444444433
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.34 E-value=1.4e+02 Score=26.11 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 006154 608 TLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 653 (658)
..+..|.+.|.+++|.+++++... .|+......-+...-+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 345679999999999999999986 5566555555555444443
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.31 E-value=82 Score=23.89 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=7.9
Q ss_pred HHhcCChHHHHHHHHHHH
Q 006154 299 FCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 299 ~~~~g~~~~A~~~~~~~~ 316 (658)
....|+.++|.+.+++..
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334444444444444433
No 424
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.25 E-value=13 Score=35.45 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=47.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
..|.++.|++.|...++.. ++....|..-..++.+.++...|.+-+....+.++.....|-.-..+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666665555542 234444444455555556666666666655555555444444444444455566666666
Q ss_pred HHHHHHCCCC
Q 006154 556 FSEMRNVGIA 565 (658)
Q Consensus 556 ~~~~~~~~~~ 565 (658)
+....+.++.
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 6665555443
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.56 E-value=1.6e+02 Score=23.95 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMK 592 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 592 (658)
.+.++|+.|...|+.-. +.-|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444333222 2233444444444444444444443
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.45 E-value=1.1e+02 Score=25.61 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=28.2
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 006154 593 VMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 593 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 652 (658)
.+.+.|++++..- ..++..+...++.-.|.++++++.+.+..-+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444443322 2344444444444555555555555544444555444555554444
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.39 E-value=3.4e+02 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 582 (658)
++.+.|+..+..|.+.|..|....-..++.++..-|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 566777777777777666555444444444444443
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.72 E-value=1.8e+02 Score=24.34 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-----CcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHH
Q 006154 183 AWNNFLSHLVKLNEIGRFWKLYKEMVSCGY-----VENVNTFNLVIYALCKECK-LEEALSLYYRMLKSGIWPNVVCFNM 256 (658)
Q Consensus 183 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 256 (658)
..|.++......+++.....+++.+..... ..+...|.+++.+..+... ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677766767777777776666643210 1234467777777755544 3345667777776666777777777
Q ss_pred HHHHHHh
Q 006154 257 IINEACQ 263 (658)
Q Consensus 257 li~~~~~ 263 (658)
+|.++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 7776544
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.55 E-value=26 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIIN 259 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 259 (658)
.|.-.+|..+|++|++.|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3555566666666666666655 3444443
No 430
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.95 E-value=17 Score=34.70 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=54.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAA 518 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 518 (658)
....|.++.|++.+...+..+ ++....|.--.+++.+.+++..|++=+....+.+.. +..-|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 445667777777777766653 234455555566677777777777777666664221 222333333334456777777
Q ss_pred HHHHHHHHHcCCC
Q 006154 519 KSLLQASQRIGLL 531 (658)
Q Consensus 519 ~~~~~~~~~~~~~ 531 (658)
...+....+.+..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 7777777776554
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.53 E-value=3.1e+02 Score=31.56 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 360 VVYNSTIHWLFAEG--DVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 360 ~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
.-...++.+|.+.+ ++++|+....++.+. +.......+..++-.- .+-++|+..+..- |. =.+++-
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~fLv---Dvn~Ly~~ALG~Y---Dl--~Lal~V 880 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCFLV---DVNKLYDVALGTY---DL--ELALMV 880 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHheeec---cHHHHHHHHhhhc---CH--HHHHHH
Confidence 34556777888877 788888888888765 2222222222222211 1222333322210 10 012233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
+-..+.|+.|=+-.++++.+. +|+..-| .|+. ..+++++|++.+.++
T Consensus 881 Aq~SQkDPKEYLPfL~~L~~l--~~~~rry--~ID~--hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 881 AQQSQKDPKEYLPFLQELQKL--PPLYRRY--KIDD--HLKRYEKALRHLSAC 927 (928)
T ss_pred HHHhccChHHHHHHHHHHHhC--Chhheee--eHhh--hhCCHHHHHHHHHhh
Confidence 333455666666666666553 2222212 2332 357888888776543
No 432
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.41 E-value=1.3e+02 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 006154 443 NNLAAAKQLLSSMI 456 (658)
Q Consensus 443 ~~~~~A~~~~~~~~ 456 (658)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.26 E-value=90 Score=24.92 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=34.7
Q ss_pred cCCCchHHHHHHHHHHhc-CCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 106 NWRRFDDALLLMGNLMSA-NSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
..+.+++|..-+.+.++. ...++.++|+-- ..+..++..|..++...|++++++.--+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~-------GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHD-------GFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HH-------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccc-------cHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 457788887777776654 345555544321 123456777888888888888776655543
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.08 E-value=2e+02 Score=28.91 Aligned_cols=121 Identities=7% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHH--hHHHHHHHHHhcC--CHhHHHHHHHHHHhCCCC--cCHHHHHHHHHHH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIH--AWNNFLSHLVKLN--EIGRFWKLYKEMVSCGYV--ENVNTFNLVIYAL 226 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~ 226 (658)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|..-. ++++|.+.++........ .....+..+....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 227 CKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLF 274 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 274 (658)
-....+......-..-.+.-..+-....-.-..--...|+++.|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarl 264 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARL 264 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
No 435
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.53 E-value=3.2e+02 Score=26.54 Aligned_cols=81 Identities=11% Similarity=-0.015 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhCCC----ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 162 TEGAYDVIQKLKVKGH----SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALS 237 (658)
Q Consensus 162 ~~~A~~~~~~~~~~g~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 237 (658)
.+.|.+.|+.....+. ..++..-..++....+.|..+....+++.... ..+......++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566666666665321 33455555566666666665554444444443 2355556666666666666666666
Q ss_pred HHHHHHhC
Q 006154 238 LYYRMLKS 245 (658)
Q Consensus 238 ~~~~m~~~ 245 (658)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666654
No 436
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.26 E-value=2.9e+02 Score=31.72 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=16.5
Q ss_pred CHhhHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFING--KIAEAFAMFSEMRN 561 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 561 (658)
.......++.+|++.+ ++++|+....++.+
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 3444455555565555 55566665555554
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=4.2e+02 Score=27.91 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHH-------hCCCC-------------cCHHHHHHH---HHHHHhcCCHHHHHHH
Q 006154 182 HAWNNFLSHLVKLNEIGRFWKLYKEMV-------SCGYV-------------ENVNTFNLV---IYALCKECKLEEALSL 238 (658)
Q Consensus 182 ~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~g~~-------------~~~~~~~~l---~~~~~~~g~~~~A~~~ 238 (658)
.+...+..++..+|+.+.|..+.++.+ ...+. -|...|.++ +..+.+.|-+..|.++
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 344445556667777766655555433 22111 123334333 3345677888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCC---hHHHHHHHHH
Q 006154 239 YYRMLKSGIWPNVVCFNMIINEAC-QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGR---VEFAEEIRYA 314 (658)
Q Consensus 239 ~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 314 (658)
.+-+.+....-|+.....+|+.|+ ++.+++--+++++..+.+.....-||...-.++...|..... -+.|...+.+
T Consensus 365 cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 365 CKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 888887765556777778888776 567788888888875444444445554433444455554444 3344444444
Q ss_pred HHH
Q 006154 315 MIK 317 (658)
Q Consensus 315 ~~~ 317 (658)
+.+
T Consensus 445 Al~ 447 (665)
T KOG2422|consen 445 ALK 447 (665)
T ss_pred HHH
Confidence 443
No 438
>PRK10941 hypothetical protein; Provisional
Probab=43.03 E-value=3e+02 Score=26.07 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
..+.+-.+|.+.++++.|+...+.+.... +.++.-+.--+-.|.+.|.+..|..=++..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34444455555566666666665555532 222333333444455555555555555555543
No 439
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.40 E-value=1e+02 Score=20.48 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVGIAVNKVG 570 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 570 (658)
.+.-++.+.|++++|.+..+.+++ +.|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 455567777777777777777777 3455443
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.95 E-value=1.9e+02 Score=23.51 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.+.++|+.|...+.. .+..|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 777777777777665 6777777777788888888888877653
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.69 E-value=2.9e+02 Score=26.48 Aligned_cols=70 Identities=19% Similarity=0.421 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------cCCHHHHH
Q 006154 202 KLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ----------VGDLEFAL 271 (658)
Q Consensus 202 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A~ 271 (658)
++++.+.+.++.|.-+.+.-+.-.+.+.=.+.+++.+++.+... ..-|..|+..||. .|++....
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 55666666666666666655555555666666666666666542 2224444444443 35555555
Q ss_pred HHHHH
Q 006154 272 KLFRK 276 (658)
Q Consensus 272 ~~~~~ 276 (658)
++++.
T Consensus 339 kLLQ~ 343 (370)
T KOG4567|consen 339 KLLQN 343 (370)
T ss_pred HHHhc
Confidence 55554
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.53 E-value=55 Score=30.99 Aligned_cols=28 Identities=25% Similarity=0.186 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAG 319 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 319 (658)
|+..|....+.|++++|+.++++.++.|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3455555555555555555555555554
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.26 E-value=1.6e+02 Score=22.08 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=4.9
Q ss_pred ChHHHHHHHHHHH
Q 006154 409 CVKQAFKLHNQVL 421 (658)
Q Consensus 409 ~~~~a~~~~~~~~ 421 (658)
+.+.|.+++..+.
T Consensus 51 ~~~~ar~LL~~L~ 63 (88)
T cd08819 51 NESGARELLKRIV 63 (88)
T ss_pred cHHHHHHHHHHhc
Confidence 3333333333333
No 444
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=3.3e+02 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHH-------HHHHHHHHhcCCHHHHHH
Q 006154 186 NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTF-------NLVIYALCKECKLEEALS 237 (658)
Q Consensus 186 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-------~~l~~~~~~~g~~~~A~~ 237 (658)
.+.+-..+.+++++|+..|.+++..|+..|..+. ..+...|...|+...-.+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3445556677778888888887777766554433 334445555555444333
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.04 E-value=69 Score=30.37 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 572 NILINFLCKFGCYQQARELMKVMILHGII 600 (658)
Q Consensus 572 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 600 (658)
+..|....+.||+++|+++++++.+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44455555555555555555555555443
No 446
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.64 E-value=2.2e+02 Score=23.54 Aligned_cols=66 Identities=6% Similarity=0.056 Sum_probs=35.9
Q ss_pred CHhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFING---KIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+--.+..++.+.. +..+.+.+++++.+...+. .....-.|.-++.+.|++++++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4444445555555544 3445666666666522111 1222334555666777777777777776664
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.59 E-value=4.2e+02 Score=26.82 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcccccCC-----cCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 253 CFNMIINEACQVGDLEFALKLFRKMGVMSGDS-----VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 316 (658)
+...|++.++-.||+..|+++++.+. +...+ ..-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999988853 12221 11234556677778888888888888888765
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.57 E-value=1.6e+02 Score=31.29 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQ------QARELMKVMILHGIIPDYVTYTTL 609 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~g~~p~~~~~~~l 609 (658)
+|..+|...|++-.+.++++...... -..=...+|..++...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887642 2222456778888888888753 4555565555 44577888777
Q ss_pred HHHHHh
Q 006154 610 VTRFSK 615 (658)
Q Consensus 610 ~~~~~~ 615 (658)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 666544
No 449
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=38.91 E-value=4.2e+02 Score=26.64 Aligned_cols=174 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHhcCCChHHHHH---------HHHHhcccCCCCCCHHhHHHHHHHHHcCCCchH--HHHHHHHHHhc
Q 006154 55 APSLTNSLVNRVVSEFRKSPKLALE---------FYTWVGENNRFSHSLESSCAIVHLLVNWRRFDD--ALLLMGNLMSA 123 (658)
Q Consensus 55 ~~~l~~~~~~~vl~~~~~~~~~al~---------~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--a~~~~~~~~~~ 123 (658)
+.+|+++.+..+|.+...+....+. .+..+.... ..+...-...+.+....-+.++ -...+++++++
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s--~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS--NGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc--CchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Q ss_pred CCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-----
Q 006154 124 NSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQI---GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN----- 195 (658)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----- 195 (658)
.......+-..+.-++.++.+. .+++.|+-.+.+|.+.|..|-...-..++-++-.-|
T Consensus 238 --------------~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~ 303 (436)
T COG2256 238 --------------RSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPN 303 (436)
T ss_pred --------------hhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChh
Q ss_pred CHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 196 EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLK 244 (658)
Q Consensus 196 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 244 (658)
-..-|...++.....|.+-........+-.++-.-+-..+...|+....
T Consensus 304 Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKSNavY~A~~~A~~ 352 (436)
T COG2256 304 ALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKSNAVYTAINAALA 352 (436)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.45 E-value=3.7e+02 Score=25.91 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPN-LVIYNSIINGLCKDASLDAAKSLLQASQ 526 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 526 (658)
+.|+..+|.+.++++.+.-.-.+ ..+...++.++....-+.+...++.+..
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666665555544311000 1122334444444444444444444333
No 451
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.16 E-value=2.5e+02 Score=23.52 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIG------LLDAITYNTLINGYFINGK-IAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
+.++......+++.-...+++.+.... ..+...|..++.+..+..- --.+..+|.-+.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444442211 1144455555555533333 223444555555444555555555555
Q ss_pred HHHHh
Q 006154 576 NFLCK 580 (658)
Q Consensus 576 ~~~~~ 580 (658)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55443
No 452
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=36.97 E-value=2.3e+02 Score=23.06 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLM 121 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 121 (658)
+++|..|.+++.+....+ .+...++.+....---.+.++...+.
T Consensus 2 enNp~IA~~~l~~l~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~ 45 (126)
T PF10155_consen 2 ENNPNIAIEILVKLINSP-------NFKEYLDVLVSMDMSLHSMEVVNRLT 45 (126)
T ss_pred CCcHHHHHHHHHHHcCCc-------hHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 356667777766655422 13334444444444444444444444
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=4e+02 Score=25.79 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 512 DASLDAAKSLLQASQRI 528 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~ 528 (658)
..++.+|-.+|-+....
T Consensus 194 vR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVST 210 (393)
T ss_pred HHhHHHHHHHHHHHccc
Confidence 34555555555554443
No 454
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.53 E-value=1.9e+02 Score=24.18 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=26.8
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006154 559 MRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC 617 (658)
Q Consensus 559 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 617 (658)
+.+.|++++.. -..+++.+...++.-.|.++++++.+.+..-+..|....+..+...|
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444332 22444555555444556666666665544444444333334444433
No 455
>PRK09857 putative transposase; Provisional
Probab=36.30 E-value=3.4e+02 Score=26.09 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
..++.++-.++++.+.+. .++......++++-+.+.|.-++++++.++|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444433 222233333444444455544555555555555555433
No 456
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.96 E-value=4.5e+02 Score=26.18 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLC-RNGCVKQAFKLHNQVLE 422 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 422 (658)
+..+.+.|-+..|+++.+-+...+..-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455666777777777777766655556666666666554 55666666666665443
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.89 E-value=3.8e+02 Score=25.22 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=9.4
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~ 560 (658)
|...++...|...++...
T Consensus 151 yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 444555555555554443
No 458
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=4e+02 Score=28.49 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSE 558 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 558 (658)
+.-+|.+..+.|.|.++++++.+..+.++..--.+..+....|..++|+.....
T Consensus 400 l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 400 LQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 333344444555555555555554444444444444444444555555444433
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.59 E-value=2e+02 Score=24.83 Aligned_cols=58 Identities=5% Similarity=-0.070 Sum_probs=28.2
Q ss_pred HCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 006154 561 NVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSP 619 (658)
Q Consensus 561 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 619 (658)
..|+..+..=. .++..+...++.-.|.++++++.+.+...+..|....+..+.+.|-.
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444443322 33334444444455666666666555555555544445555555543
No 460
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.58 E-value=1.5e+02 Score=20.47 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=25.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH-----HhcCCHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL-----CKFGCYQQAREL 590 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~ 590 (658)
+...|++=+|.++++.+-.....|....+..+|+.. .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445677777777777775432223444454454432 245666665554
No 461
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.45 E-value=2.1e+02 Score=24.04 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 006154 619 PEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 619 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 652 (658)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443334444444444444433
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.39 E-value=4.7e+02 Score=26.22 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKG--HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..+.-+...|...|+++.|++.|.+...-- -+..+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455666777777777777777777754421 112334455555555556666555555544443
No 463
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.35 E-value=3.6e+02 Score=24.77 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=17.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHh
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAI 534 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 534 (658)
+...|+++.|+++.+.+.+.+...+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCc
Confidence 45667777777777777777765333
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.25 E-value=4.8e+02 Score=26.21 Aligned_cols=61 Identities=11% Similarity=-0.059 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICP---DHFTYSILTKGLCRNGCVKQAFKLHNQVLE 422 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (658)
.+.-+...|...|+++.|++.|.+..+- +.. ....+..+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 5666777788888888888888775442 111 222333444444556666666666655554
No 465
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.69 E-value=3.2e+02 Score=24.11 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKR 353 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (658)
+.|......-++.-..+++-+.+ =..+--+++..|.+..++.+..++++.|.+.
T Consensus 108 vPFceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 108 VPFCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655554444433221 1223345667777888888888888887664
No 466
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.63 E-value=2.6e+02 Score=23.07 Aligned_cols=67 Identities=6% Similarity=0.009 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 496 KPNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIGL-L-DAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
.++..+--.+..++.+.. ++.+...+++++.+... . .......|.-++.+.+++++++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445555556666666544 56677888888886333 3 5566666777889999999999999988884
No 467
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.19 E-value=4.5e+02 Score=25.61 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006154 445 LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK------GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAA 518 (658)
Q Consensus 445 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 518 (658)
++++..++++....+. |..+.....|.++.. .-+|.....+|+.+.... |++++-..-.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHHHHHHHhhhHHhH
Confidence 4566666666666544 566666665555432 234555556666665543 3332211112223333444555
Q ss_pred HHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 519 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+.+.+.+...+-. ....+..-...+.+.|+.++|..-|++...
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5555555544322 222333344555666666666666666655
No 468
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=3.8e+02 Score=24.64 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=12.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC
Q 006154 440 CKSNNLAAAKQLLSSMIVRGLI 461 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~~~~~~ 461 (658)
...+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666554433
No 469
>PRK09857 putative transposase; Provisional
Probab=33.66 E-value=3.4e+02 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 186 NFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 186 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
.++....+.++.++..++++.+.+. .+......-++..-+.+.|.-+++++...+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3343334444444444444444433 1112222223334444444444455555555555444
No 470
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.17 E-value=7e+02 Score=27.50 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHH-cCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---C----------CChHHHHHHHHHH
Q 006154 514 SLDAAKSLLQASQR-IGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI---A----------VNKVGYNILINFL 578 (658)
Q Consensus 514 ~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----------p~~~~~~~l~~~~ 578 (658)
..++....+....+ .+.. +......++... .|+...++.+++++...|- . .+......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34555555555444 4554 666666666544 6899999999988765331 1 0111222333333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 579 CKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 579 ~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
. .++...++.+++++...|+.+.
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCHH
Confidence 3 3667777777777777665443
No 471
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=33.07 E-value=3.8e+02 Score=24.42 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 006154 355 LMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI-CPDHFTYS--ILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYS 431 (658)
Q Consensus 355 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (658)
+.++..-+|.|+--|.-...+.+|.+.|..-..... ..|..+++ .-|......|++++|++....+...-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHHH----HHhcCCHHHHHHHHHH
Q 006154 432 YNILINY----LCKSNNLAAAKQLLSS 454 (658)
Q Consensus 432 ~~~l~~~----~~~~~~~~~A~~~~~~ 454 (658)
+-.|... +.+.|..++|++..+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
No 472
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.98 E-value=5.5e+02 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
..+.+.|+..+..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356777777777777766655544444444433
No 473
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.30 E-value=2.5e+02 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777666
No 474
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.10 E-value=5.1e+02 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006154 227 CKECKLEEALSLYYRMLK 244 (658)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~ 244 (658)
...+++++|.-+|+..+.
T Consensus 194 iglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVT 211 (422)
T ss_pred eccccHHHHHHHHHHHHh
Confidence 345678888888877765
No 475
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=32.07 E-value=1.1e+02 Score=17.84 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH
Q 006154 584 YQQARELMKVMILHGIIPDYVTYT 607 (658)
Q Consensus 584 ~~~A~~~~~~~~~~g~~p~~~~~~ 607 (658)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444455555444 234444443
No 476
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.40 E-value=3.6e+02 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006154 538 TLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
.+...|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555566666666666555
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.32 E-value=1.1e+02 Score=21.34 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=23.9
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
....++.++...++..-.+.++..+.+....|. .+..+|..-++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334455555555555555555555555555552 344444444444443
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.88 E-value=2.3e+02 Score=22.18 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=8.3
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSE 558 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~ 558 (658)
+..|...|+.++|..-+++
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555444444
No 479
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.51 E-value=5.1e+02 Score=25.07 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=7.4
Q ss_pred hcCCHHHHHHHHHH
Q 006154 263 QVGDLEFALKLFRK 276 (658)
Q Consensus 263 ~~g~~~~A~~~~~~ 276 (658)
+.|+..+|.+.|+.
T Consensus 287 klGrlrEA~K~~RD 300 (556)
T KOG3807|consen 287 KLGRLREAVKIMRD 300 (556)
T ss_pred HhhhHHHHHHHHHH
Confidence 34555555555555
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.29 E-value=5.4e+02 Score=25.28 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRNVGIAVNK----VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTR 612 (658)
Q Consensus 550 ~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 612 (658)
++.+.++.+++.. -|+. .-|..++......|.++.++.+|++++..|-+|=...-..++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4555566655553 3442 23455555556666666666666666666666554444444443
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.80 E-value=9.6e+02 Score=28.05 Aligned_cols=125 Identities=13% Similarity=0.017 Sum_probs=66.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhh--------ccCCCCC-----HHHHHHHHHHHHhcCChhHHHH
Q 006154 101 VHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDS--------YEICKAT-----PAVFDALVRACTQIGATEGAYD 167 (658)
Q Consensus 101 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~ 167 (658)
+.++...|+.-+|...|.++.. +....+.+..++.. ..|.-++ ...|..+++.+-+.+-.+.+.+
T Consensus 927 g~~yl~tge~~kAl~cF~~a~S--g~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALS--GFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhh--ccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3345566777777777776653 33334444444433 1111111 2346677777777777777777
Q ss_pred HHHHHHhCCCc--cC-HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHH----HHHHHHHHHHhcCCHH
Q 006154 168 VIQKLKVKGHS--VS-IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVN----TFNLVIYALCKECKLE 233 (658)
Q Consensus 168 ~~~~~~~~g~~--~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~ 233 (658)
+....++.-.. |+ +.+++.+.......|.+.+|...+ .+ .||.. ....++..++.+|+++
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccchH
Confidence 77766653211 11 234556666666666666554433 32 23332 3444555566666543
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.69 E-value=5e+02 Score=24.70 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCC----H
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIV----RGLIPDIITYGT-LIDGYCKGGNIEGAVQVYENMKKVEKKPN----L 499 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 499 (658)
...+..+...|++.++.+.+.+..++..+ .|.+.|.....+ |.-.|....-.++.++..+.|.+.|-.-+ .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44566677777777777777766655443 344444332222 12223333335566666667766654322 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CHhhHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLL-DAITYNTL 539 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l 539 (658)
.+|..+. +....++.+|-.++.+....... ....|...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRA 233 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHH
Confidence 2333222 12345666776666665544333 33334333
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.95 E-value=2.1e+02 Score=22.51 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=23.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLI 331 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 331 (658)
+++-+.++...++|+++++-|.++| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455667777888888888888877 55544444433
No 484
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.81 E-value=2.7e+02 Score=21.34 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=56.3
Q ss_pred HHHHHHhccCCchhhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHH-HhcccCCCCCCHHhHHHHHHHHHcCCCchHHH
Q 006154 36 FRAICVNLRQRKWKILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYT-WVGENNRFSHSLESSCAIVHLLVNWRRFDDAL 114 (658)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 114 (658)
+..++..+....|..+-+.+ .|+...+..+-..-+.+.+...+.+. |..+.+ ...++..++.+|.+.+.-..|.
T Consensus 10 f~~i~~~V~~~~Wk~laR~L-GLse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G----~~At~~~L~~aL~~~~~~~~Ae 84 (96)
T cd08315 10 FDHFIKEVPFDSWNRLMRQL-GLSENEIDVAKANERVTREQLYQMLLTWVNKTG----RKASVNTLLDALEAIGLRLAKE 84 (96)
T ss_pred HHHHHHHCCHHHHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHcccccHHH
Confidence 34455555556788764433 28888888877666656677777666 766533 2346888999999998888888
Q ss_pred HHHHHHHh
Q 006154 115 LLMGNLMS 122 (658)
Q Consensus 115 ~~~~~~~~ 122 (658)
.+-+.++.
T Consensus 85 ~I~~~l~~ 92 (96)
T cd08315 85 SIQDELIS 92 (96)
T ss_pred HHHHHHHH
Confidence 87666654
No 485
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=7.7e+02 Score=26.56 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS 209 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 209 (658)
..+..|.-+|....+++.|.+++++..+.+.+ ++.+-..+..+....|..++|.........
T Consensus 395 K~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 395 KIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 45666777888888888888888888876433 555555566677777888888777776654
No 486
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.44 E-value=8.9e+02 Score=27.23 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE 372 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 372 (658)
.+.-+.+...|+.++...+-.-+. -|..++..+...+.+++|++++..-. +..........+ ..
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i~ 571 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-IT 571 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-Hh
Confidence 334444455666666655444443 24566777777788888777765531 111111111111 11
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 006154 373 GDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN---GCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLA 446 (658)
Q Consensus 373 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (658)
....+....+... +-..+......++..+.+. .....+...++-....-..-++..+|.++..|.+..+-+
T Consensus 572 ~~p~~tV~~wm~~---~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 572 HSPKETVSAWMAQ---KDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred cCcHHHHHHHHHc---cccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 1222222222222 2222222333333333333 233444555544444433447777787777777655443
No 487
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=28.43 E-value=1.4e+02 Score=17.87 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
+-.+.-.+...|++++|.++|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3445556667777777777733
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.40 E-value=1.3e+02 Score=23.75 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC 617 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 617 (658)
.+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333333444455555544443344444333344444443
No 489
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.37 E-value=4.2e+02 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKV 493 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~ 493 (658)
++-.|.+..+|.+..++++.|.+.
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777777777653
No 490
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.00 E-value=5.1e+02 Score=25.24 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEK---KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
.-|.+..++..|...|.+-++... ..+.+.|+.-..+-.-.|++..|+.-........|.....|--=..++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 345555556666666655544321 12233444444444445555555555555555555544444444444444444
Q ss_pred HHHHHHHH
Q 006154 549 IAEAFAMF 556 (658)
Q Consensus 549 ~~~A~~~~ 556 (658)
+++|....
T Consensus 169 ~~~a~nw~ 176 (390)
T KOG0551|consen 169 FAEAVNWC 176 (390)
T ss_pred HHHHHHHH
Confidence 44444433
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.86 E-value=3.6e+02 Score=25.86 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 344 LRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 344 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.. |..-+..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 35666666777777766666666666666667777777777665 33335555555553
No 492
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.81 E-value=3.7e+02 Score=28.83 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCChhhHHH
Q 006154 256 MIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVE------FAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 256 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
+|..+|...|++-.+.++++.... ...|-+.-...+|..|+...+.|.++ .|.+.+++.. +.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~-~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID-HNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 888999999999999999998421 12222333556788888888888754 3444444443 4557888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 006154 330 LIDGYARGGSSEEALRLCDEMVK 352 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~ 352 (658)
|+++-...-+-.-.+-++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88776553333334444444443
No 493
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.67 E-value=6.2e+02 Score=25.21 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHH
Q 006154 504 SIINGLCKDAS---LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGY 571 (658)
Q Consensus 504 ~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 571 (658)
.+++.+...++ +-+|..+++......+.+...--.++..|...|-.+.|...|..+.-+.+.-|...|
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 33443434443 456777888888887778888888889999999999999988877433343343333
No 494
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.52 E-value=3.5e+02 Score=22.25 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 645 (658)
+|.+.. .++--+...|+++.|+++.+.++++|.... ..|+.=..++. .++..+...+..+.|-..+........
T Consensus 47 qd~Vl~-~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P-~~f~R~~~t~v----aeev~~~a~~~~~~g~~~~~~~l~~~~ 120 (132)
T PF05944_consen 47 QDDVLM-TVMVWLFDVGDFDGALDIAEYAIEHGLPMP-DRFKRTLPTFV----AEEVADWALRAAKAGQSFEPYFLSRVF 120 (132)
T ss_pred cCchHH-hhHhhhhcccCHHHHHHHHHHHHHcCCCcc-ccccCcchHHH----HHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 344333 334445678888899888888888875422 22211111111 233444444445556666655545544
Q ss_pred HHhhcC
Q 006154 646 SPLLGE 651 (658)
Q Consensus 646 ~~~~~~ 651 (658)
..-...
T Consensus 121 ~l~~~~ 126 (132)
T PF05944_consen 121 ELTADQ 126 (132)
T ss_pred HHHccC
Confidence 444433
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.11 E-value=2.7e+02 Score=20.80 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
++|+-....|+..|+..|..++..+.-.--++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777788888888887777666666677777777777653
No 496
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.05 E-value=2.7e+02 Score=21.79 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=8.3
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 006154 471 IDGYCKGGNIEGAVQVYEN 489 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~ 489 (658)
+..|...|+.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555544444
No 497
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=27.04 E-value=2.6e+02 Score=20.66 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhc
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSY 139 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (658)
++....+++.+.. +++++++..+.+++.. |.++.+++..+....
T Consensus 5 ~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~-G~s~~~Il~~l~~~l 48 (89)
T PF08542_consen 5 PEVIEEILESCLN-GDFKEARKKLYELLVE-GYSASDILKQLHEVL 48 (89)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHT-T--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 3444455555543 4888999999988886 888888877776543
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.91 E-value=6.2e+02 Score=24.89 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 516 DAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
++...+++.+...-|. -+..|-.++......|.++..+.+|+++...|..|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4455555555554443 345566777777777777777888887777777776555555555544
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.88 E-value=2.3e+02 Score=19.85 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=8.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
++...++..-++++...+.++..
T Consensus 14 l~el~Aed~AieDtiy~L~~al~ 36 (65)
T PF09454_consen 14 LYELVAEDHAIEDTIYYLDRALQ 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 500
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=1.1e+03 Score=27.67 Aligned_cols=118 Identities=12% Similarity=0.027 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----HHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK----VGYNI 573 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ 573 (658)
|...++.+-..+-.+.+.++-..+.+.-++ -+.+++++.+.....|.+.+|...+ .+ .||. ....-
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHH
Confidence 556667777777778777777766665443 3456777777777788877775543 22 2443 33456
Q ss_pred HHHHHHhcCCHH------------HHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006154 574 LINFLCKFGCYQ------------QARE-LMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 574 l~~~~~~~g~~~------------~A~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
++-.++.+|.++ +... +++..-+.........|+.|-..+...+++.+|-.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666777777653 3333 222222222222334566555557777787776544
Done!