Query 006154
Match_columns 658
No_of_seqs 813 out of 3929
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 17:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4.1E-44 350.5 49.0 489 144-649 82-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.5E-38 1.5E-42 338.2 46.8 488 92-613 82-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-27 5.4E-32 241.1 47.3 380 152-545 5-385 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-27 8.9E-32 239.6 47.6 380 224-652 7-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1E-29 3.6E-34 260.7 23.3 204 165-371 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.8E-29 6.1E-34 259.0 23.2 207 198-407 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.8E-24 1.3E-28 225.2 42.0 439 146-597 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.7E-24 1.3E-28 225.2 41.0 446 181-640 6-484 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.3E-22 7.8E-27 212.8 44.0 363 94-491 25-405 (537)
10 3fp2_A TPR repeat-containing p 99.9 3.7E-23 1.3E-27 218.9 37.1 435 145-597 24-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 206.4 39.9 316 214-562 24-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 8.6E-22 3E-26 203.3 42.0 371 250-657 25-444 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1E-18 3.5E-23 174.1 40.3 298 292-631 6-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.4E-18 4.8E-23 173.2 40.2 305 324-657 3-325 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 8.8E-16 3E-20 166.7 59.7 421 143-627 982-1440(1630)
16 2xm6_A Protein corresponding t 99.9 1.7E-16 5.7E-21 165.2 52.5 364 166-599 27-434 (490)
17 2xm6_A Protein corresponding t 99.9 1.1E-16 3.8E-21 166.5 50.1 353 144-529 37-433 (490)
18 2ooe_A Cleavage stimulation fa 99.9 2.6E-17 8.8E-22 173.1 44.8 424 141-597 8-492 (530)
19 3hym_B Cell division cycle pro 99.9 2.7E-18 9.3E-23 169.0 35.1 286 287-578 20-314 (330)
20 2ooe_A Cleavage stimulation fa 99.9 3.1E-17 1.1E-21 172.5 45.3 429 169-632 2-492 (530)
21 3hym_B Cell division cycle pro 99.8 2.4E-18 8.1E-23 169.4 33.9 289 358-653 21-320 (330)
22 1xi4_A Clathrin heavy chain; a 99.8 1.2E-15 4.2E-20 165.5 56.3 352 151-557 1054-1440(1630)
23 1fch_A Peroxisomal targeting s 99.8 2.1E-18 7.2E-23 172.7 28.8 310 262-595 36-357 (368)
24 1fch_A Peroxisomal targeting s 99.8 3.8E-18 1.3E-22 170.8 26.0 264 362-630 67-357 (368)
25 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.4E-22 160.6 28.0 282 158-486 15-304 (449)
26 4eqf_A PEX5-related protein; a 99.8 2.6E-17 9E-22 164.5 26.3 244 289-561 65-309 (365)
27 1b89_A Protein (clathrin heavy 99.8 4.8E-18 1.7E-22 165.5 20.0 281 229-554 16-303 (449)
28 4eqf_A PEX5-related protein; a 99.8 1.8E-17 6.3E-22 165.6 24.6 265 361-628 67-352 (365)
29 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.6E-20 158.7 36.0 384 145-563 50-460 (472)
30 3cv0_A Peroxisome targeting si 99.8 8.2E-17 2.8E-21 158.1 25.8 280 324-630 21-313 (327)
31 3cv0_A Peroxisome targeting si 99.8 2.1E-16 7E-21 155.2 27.7 281 288-595 20-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.8 3.1E-16 1.1E-20 150.1 26.8 249 334-597 9-264 (291)
33 4g1t_A Interferon-induced prot 99.8 2.7E-15 9.2E-20 155.6 35.9 375 249-640 49-468 (472)
34 3mkr_A Coatomer subunit epsilo 99.8 4.4E-16 1.5E-20 149.1 27.0 220 330-562 40-264 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 3E-18 1E-22 180.1 11.3 117 252-368 128-245 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.3E-22 175.4 10.8 118 498-615 126-248 (1134)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-14 5E-19 136.5 26.6 223 397-632 8-236 (258)
38 3e4b_A ALGK; tetratricopeptide 99.7 9.5E-15 3.2E-19 149.4 27.0 378 222-631 9-420 (452)
39 3uq3_A Heat shock protein STI1 99.7 2.7E-14 9.2E-19 134.6 25.8 225 360-597 6-236 (258)
40 3e4b_A ALGK; tetratricopeptide 99.7 2.2E-14 7.4E-19 146.8 26.4 379 152-596 9-420 (452)
41 2pl2_A Hypothetical conserved 99.7 2.3E-14 7.9E-19 130.9 22.9 198 428-630 4-212 (217)
42 2pl2_A Hypothetical conserved 99.6 4.4E-14 1.5E-18 129.0 22.3 114 478-594 98-211 (217)
43 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.4E-18 131.2 26.0 231 398-631 7-249 (272)
44 4e6h_A MRNA 3'-END-processing 99.6 1.2E-11 4.2E-16 130.4 42.4 434 131-597 54-570 (679)
45 4e6h_A MRNA 3'-END-processing 99.6 2.4E-11 8.1E-16 128.3 43.4 457 160-649 46-585 (679)
46 3u4t_A TPR repeat-containing p 99.6 2.8E-13 9.6E-18 128.8 25.9 244 292-539 6-261 (272)
47 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.2E-18 135.3 25.1 228 396-629 99-344 (382)
48 1ouv_A Conserved hypothetical 99.6 3.6E-12 1.2E-16 121.2 32.7 222 395-633 7-252 (273)
49 1ouv_A Conserved hypothetical 99.6 2.4E-12 8.2E-17 122.4 30.7 224 144-388 4-251 (273)
50 2ho1_A Type 4 fimbrial biogene 99.6 9.9E-13 3.4E-17 123.4 27.5 198 396-596 39-237 (252)
51 2ho1_A Type 4 fimbrial biogene 99.6 5.2E-13 1.8E-17 125.4 25.4 211 429-645 37-249 (252)
52 2h6f_A Protein farnesyltransfe 99.6 4.8E-13 1.7E-17 132.3 25.9 248 289-543 97-363 (382)
53 2vq2_A PILW, putative fimbrial 99.6 8.4E-13 2.9E-17 121.4 25.9 198 431-631 10-210 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.9E-14 3E-18 132.5 19.6 221 336-596 17-243 (275)
55 2vq2_A PILW, putative fimbrial 99.6 2E-12 6.8E-17 118.9 27.6 202 394-597 8-211 (225)
56 2q7f_A YRRB protein; TPR, prot 99.6 3.2E-13 1.1E-17 126.0 21.2 200 428-631 22-221 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5E-18 131.0 18.9 247 158-417 17-269 (275)
58 2q7f_A YRRB protein; TPR, prot 99.5 4.9E-13 1.7E-17 124.7 21.3 200 394-597 23-222 (243)
59 3sf4_A G-protein-signaling mod 99.5 3E-13 1E-17 137.0 20.5 273 322-595 7-334 (406)
60 4a1s_A PINS, partner of inscut 99.5 3E-13 1E-17 137.3 18.7 275 325-631 49-371 (411)
61 4a1s_A PINS, partner of inscut 99.5 9.3E-13 3.2E-17 133.7 20.6 239 95-351 49-330 (411)
62 3sf4_A G-protein-signaling mod 99.5 9.6E-13 3.3E-17 133.2 20.5 300 286-586 6-365 (406)
63 3ro2_A PINS homolog, G-protein 99.5 8.3E-13 2.8E-17 129.8 18.3 274 327-632 8-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.5 8.5E-12 2.9E-16 110.6 23.1 166 463-631 4-169 (184)
65 2ond_A Cleavage stimulation fa 99.5 3.3E-11 1.1E-15 116.6 29.2 218 376-597 33-270 (308)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-11 3.9E-16 109.8 23.2 167 428-597 4-170 (184)
67 3ulq_A Response regulator aspa 99.5 1.1E-11 3.6E-16 124.4 24.6 233 365-631 109-367 (383)
68 3ro2_A PINS homolog, G-protein 99.5 3.5E-12 1.2E-16 125.2 20.5 237 96-350 7-289 (338)
69 2ond_A Cleavage stimulation fa 99.5 9.3E-11 3.2E-15 113.4 30.0 219 411-632 33-270 (308)
70 4abn_A Tetratricopeptide repea 99.4 5.7E-12 1.9E-16 129.7 21.1 212 410-627 84-316 (474)
71 3ulq_A Response regulator aspa 99.4 1E-11 3.6E-16 124.5 22.6 219 436-657 110-358 (383)
72 4abn_A Tetratricopeptide repea 99.4 8.4E-12 2.9E-16 128.4 20.8 213 375-593 84-317 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 3.4E-12 1.2E-16 123.9 14.9 177 141-317 22-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 3.2E-12 1.1E-16 124.1 14.0 200 431-631 71-306 (311)
75 3q15_A PSP28, response regulat 99.4 1.5E-10 5E-15 115.8 24.9 228 401-631 108-364 (378)
76 1hz4_A MALT regulatory protein 99.3 7.8E-10 2.7E-14 110.4 28.8 298 327-632 17-349 (373)
77 3q15_A PSP28, response regulat 99.3 3.1E-10 1.1E-14 113.4 25.0 228 365-596 107-364 (378)
78 1hz4_A MALT regulatory protein 99.3 7.4E-10 2.5E-14 110.5 27.6 299 291-597 16-349 (373)
79 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.7E-15 105.0 21.8 207 427-646 5-221 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 2.6E-10 9E-15 100.8 21.0 163 466-631 10-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 2E-10 6.8E-15 122.8 21.6 165 429-596 9-173 (723)
82 3as5_A MAMA; tetratricopeptide 99.3 5.6E-10 1.9E-14 98.6 20.6 164 431-597 10-173 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.3 2.6E-10 9E-15 121.9 21.0 166 393-561 8-173 (723)
84 4i17_A Hypothetical protein; T 99.3 9E-10 3.1E-14 101.3 22.0 200 392-603 5-213 (228)
85 1qqe_A Vesicular transport pro 99.2 6.4E-10 2.2E-14 106.5 18.8 129 501-631 119-268 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 2.8E-10 9.5E-15 108.5 15.5 226 405-631 12-280 (283)
87 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 8E-15 109.0 14.4 226 370-596 12-280 (283)
88 3urz_A Uncharacterized protein 99.1 3.3E-09 1.1E-13 95.7 18.3 137 505-646 60-198 (208)
89 3mv2_B Coatomer subunit epsilo 99.1 4.3E-08 1.5E-12 91.6 25.1 178 378-562 85-282 (310)
90 1qqe_A Vesicular transport pro 99.1 3.4E-09 1.2E-13 101.4 18.2 170 95-277 38-225 (292)
91 3mv2_B Coatomer subunit epsilo 99.1 5.5E-08 1.9E-12 90.9 24.9 243 332-597 21-282 (310)
92 2fo7_A Synthetic consensus TPR 99.1 8.4E-09 2.9E-13 85.4 17.9 128 502-631 4-131 (136)
93 2uy1_A Cleavage stimulation fa 99.1 1.1E-07 3.9E-12 97.4 29.5 376 158-596 6-412 (493)
94 3qky_A Outer membrane assembly 99.1 5.8E-09 2E-13 98.1 18.0 133 428-561 14-176 (261)
95 3urz_A Uncharacterized protein 99.0 1E-08 3.5E-13 92.5 18.0 137 469-610 59-197 (208)
96 2uy1_A Cleavage stimulation fa 99.0 3.8E-07 1.3E-11 93.5 31.5 377 193-631 6-412 (493)
97 2fo7_A Synthetic consensus TPR 99.0 1.9E-08 6.7E-13 83.1 17.7 129 467-597 4-132 (136)
98 3qky_A Outer membrane assembly 99.0 1.6E-08 5.5E-13 95.0 18.7 185 358-562 14-224 (261)
99 3dra_A Protein farnesyltransfe 99.0 2.5E-07 8.4E-12 87.6 26.1 231 411-646 50-301 (306)
100 3dra_A Protein farnesyltransfe 99.0 2.3E-07 7.8E-12 87.8 25.7 224 376-604 50-293 (306)
101 3rjv_A Putative SEL1 repeat pr 99.0 9E-08 3.1E-12 86.4 20.6 174 413-598 5-198 (212)
102 2pzi_A Probable serine/threoni 99.0 1.1E-08 3.8E-13 110.0 16.9 173 405-583 402-583 (681)
103 2r5s_A Uncharacterized protein 98.9 8.4E-09 2.9E-13 90.2 12.9 161 95-276 7-169 (176)
104 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-07 5.5E-12 85.8 21.9 185 428-632 3-213 (225)
105 3rjv_A Putative SEL1 repeat pr 98.9 1.3E-07 4.4E-12 85.4 20.8 178 446-634 3-199 (212)
106 4ga2_A E3 SUMO-protein ligase 98.9 4.6E-09 1.6E-13 89.0 10.4 109 477-587 10-118 (150)
107 2pzi_A Probable serine/threoni 98.9 1.4E-08 4.8E-13 109.3 16.5 176 440-621 402-586 (681)
108 2r5s_A Uncharacterized protein 98.9 1.7E-08 5.9E-13 88.2 14.2 162 432-596 9-172 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5.2E-12 85.9 21.1 186 393-598 3-214 (225)
110 4ga2_A E3 SUMO-protein ligase 98.9 7.2E-09 2.5E-13 87.8 10.7 145 505-653 3-149 (150)
111 3qou_A Protein YBBN; thioredox 98.9 4.9E-08 1.7E-12 92.9 17.4 165 428-595 116-282 (287)
112 3qou_A Protein YBBN; thioredox 98.9 5.1E-08 1.7E-12 92.8 16.7 165 393-561 116-283 (287)
113 2vsy_A XCC0866; transferase, g 98.9 6.4E-08 2.2E-12 102.3 18.6 154 442-598 2-158 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 7.6E-08 2.6E-12 92.7 17.0 128 467-595 79-222 (307)
115 2vsy_A XCC0866; transferase, g 98.8 1.3E-07 4.4E-12 100.0 19.0 165 407-575 2-169 (568)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.2E-07 2.5E-11 80.6 19.7 124 469-597 11-150 (213)
117 3q7a_A Farnesyltransferase alp 98.8 4.9E-06 1.7E-10 79.5 25.7 218 411-632 71-331 (349)
118 2qfc_A PLCR protein; TPR, HTH, 98.7 2.5E-06 8.6E-11 81.4 22.5 165 467-631 78-265 (293)
119 3q7a_A Farnesyltransferase alp 98.7 8.7E-06 3E-10 77.7 25.7 193 410-606 105-339 (349)
120 3u3w_A Transcriptional activat 98.7 3.7E-06 1.3E-10 80.2 23.5 162 470-631 81-265 (293)
121 3u3w_A Transcriptional activat 98.7 3.5E-06 1.2E-10 80.4 23.3 162 435-596 81-265 (293)
122 4gco_A Protein STI-1; structur 98.7 2.5E-07 8.7E-12 75.3 13.1 96 534-631 14-109 (126)
123 2qfc_A PLCR protein; TPR, HTH, 98.7 3.3E-06 1.1E-10 80.6 22.9 166 431-596 77-265 (293)
124 4gco_A Protein STI-1; structur 98.7 4.6E-07 1.6E-11 73.8 14.4 96 501-597 15-110 (126)
125 1a17_A Serine/threonine protei 98.7 8.4E-07 2.9E-11 76.3 16.7 128 501-630 15-144 (166)
126 3gyz_A Chaperone protein IPGC; 98.7 4.8E-07 1.6E-11 76.1 14.5 97 500-597 37-133 (151)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.6E-11 78.2 18.8 127 432-563 9-151 (213)
128 1a17_A Serine/threonine protei 98.6 1.3E-06 4.4E-11 75.1 16.8 130 465-596 14-145 (166)
129 3gyz_A Chaperone protein IPGC; 98.6 2.8E-07 9.5E-12 77.5 12.0 103 141-245 31-133 (151)
130 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.2E-12 89.1 11.3 100 144-245 2-101 (281)
131 4f3v_A ESX-1 secretion system 98.6 1.4E-06 4.8E-11 80.3 17.1 139 502-644 105-247 (282)
132 3gw4_A Uncharacterized protein 98.6 4.5E-07 1.6E-11 81.1 13.8 133 499-631 26-175 (203)
133 2e2e_A Formate-dependent nitri 98.6 3.2E-07 1.1E-11 80.1 12.4 120 476-597 22-144 (177)
134 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4.1E-11 84.2 17.5 169 96-277 38-221 (307)
135 3dss_A Geranylgeranyl transfer 98.6 2.1E-05 7.3E-10 74.7 24.8 185 446-638 91-308 (331)
136 1na0_A Designed protein CTPR3; 98.6 2E-06 6.8E-11 69.6 15.7 94 502-596 12-105 (125)
137 2vgx_A Chaperone SYCD; alterna 98.6 4.1E-07 1.4E-11 76.6 10.9 110 486-597 9-118 (148)
138 2vyi_A SGTA protein; chaperone 98.6 2E-06 6.8E-11 70.3 15.0 92 504-596 17-108 (131)
139 2lni_A Stress-induced-phosphop 98.5 2E-06 6.9E-11 70.6 14.7 122 141-265 11-132 (133)
140 2lni_A Stress-induced-phosphop 98.5 2.2E-06 7.6E-11 70.3 14.9 96 465-561 17-112 (133)
141 4f3v_A ESX-1 secretion system 98.5 2.5E-06 8.6E-11 78.7 16.3 187 158-353 18-237 (282)
142 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 67.9 16.0 114 464-579 9-122 (125)
143 2vgx_A Chaperone SYCD; alterna 98.5 4.6E-07 1.6E-11 76.3 10.6 94 467-561 24-117 (148)
144 2e2e_A Formate-dependent nitri 98.5 6E-07 2E-11 78.4 11.7 119 441-561 22-143 (177)
145 2c2l_A CHIP, carboxy terminus 98.5 6.1E-07 2.1E-11 84.9 12.4 193 429-631 4-198 (281)
146 4gcn_A Protein STI-1; structur 98.5 1.6E-06 5.4E-11 70.7 13.2 59 503-561 12-70 (127)
147 3dss_A Geranylgeranyl transfer 98.5 4.3E-05 1.5E-09 72.7 24.6 193 410-610 90-316 (331)
148 4gcn_A Protein STI-1; structur 98.5 1.3E-06 4.5E-11 71.2 12.5 110 532-644 7-122 (127)
149 2vyi_A SGTA protein; chaperone 98.5 2.7E-06 9.3E-11 69.4 14.5 118 464-583 12-129 (131)
150 1p5q_A FKBP52, FK506-binding p 98.5 2.8E-06 9.4E-11 82.7 16.7 129 466-595 149-292 (336)
151 3gw4_A Uncharacterized protein 98.5 5.2E-06 1.8E-10 74.1 17.1 99 145-243 25-134 (203)
152 1p5q_A FKBP52, FK506-binding p 98.5 2.7E-06 9.2E-11 82.8 16.2 151 478-631 127-293 (336)
153 3upv_A Heat shock protein STI1 98.5 4E-06 1.4E-10 68.2 14.3 94 502-596 7-100 (126)
154 2xcb_A PCRH, regulatory protei 98.4 6.9E-07 2.3E-11 74.7 8.9 98 499-597 18-115 (142)
155 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.5E-10 63.8 15.6 91 504-595 9-99 (118)
156 3upv_A Heat shock protein STI1 98.4 8.5E-06 2.9E-10 66.2 14.2 97 465-562 5-101 (126)
157 2xcb_A PCRH, regulatory protei 98.4 6.1E-06 2.1E-10 68.8 13.3 96 465-561 19-114 (142)
158 1elw_A TPR1-domain of HOP; HOP 98.4 1.7E-05 5.7E-10 63.2 15.6 98 464-562 4-101 (118)
159 2fbn_A 70 kDa peptidylprolyl i 98.4 7.4E-06 2.5E-10 72.9 14.2 95 534-630 89-184 (198)
160 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.6E-10 71.8 14.8 130 466-596 40-185 (198)
161 3q49_B STIP1 homology and U bo 98.3 1.3E-05 4.5E-10 66.1 14.3 98 498-596 8-105 (137)
162 1elr_A TPR2A-domain of HOP; HO 98.3 6.4E-06 2.2E-10 67.2 12.3 95 502-596 7-107 (131)
163 2kck_A TPR repeat; tetratricop 98.3 6.6E-06 2.3E-10 64.9 11.8 98 532-631 5-105 (112)
164 3sz7_A HSC70 cochaperone (SGT) 98.3 1.4E-05 4.7E-10 68.5 14.3 98 499-597 11-108 (164)
165 1elr_A TPR2A-domain of HOP; HO 98.3 7.2E-06 2.5E-10 66.9 11.9 114 533-649 4-123 (131)
166 2kck_A TPR repeat; tetratricop 98.3 7.4E-06 2.5E-10 64.6 11.4 100 144-245 4-106 (112)
167 1hxi_A PEX5, peroxisome target 98.3 7.1E-06 2.4E-10 66.1 11.3 92 504-596 22-113 (121)
168 3q49_B STIP1 homology and U bo 98.3 4.7E-05 1.6E-09 62.7 16.3 100 462-562 7-106 (137)
169 2dba_A Smooth muscle cell asso 98.2 4.6E-05 1.6E-09 63.6 15.7 96 464-561 28-127 (148)
170 2dba_A Smooth muscle cell asso 98.2 4.3E-05 1.5E-09 63.8 15.5 96 500-596 29-127 (148)
171 1hxi_A PEX5, peroxisome target 98.2 1.3E-05 4.4E-10 64.5 11.4 95 467-562 20-114 (121)
172 3sz7_A HSC70 cochaperone (SGT) 98.2 3E-05 1E-09 66.4 14.5 98 464-562 11-108 (164)
173 4b4t_Q 26S proteasome regulato 98.2 0.00014 4.8E-09 73.6 20.6 196 401-596 11-244 (434)
174 4b4t_Q 26S proteasome regulato 98.2 0.00011 3.9E-09 74.3 19.9 196 366-561 11-244 (434)
175 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.3E-10 67.7 10.9 130 502-631 12-157 (164)
176 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.8E-09 59.6 15.6 88 508-596 11-104 (129)
177 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.5E-10 66.8 11.6 130 467-596 12-157 (164)
178 3rkv_A Putative peptidylprolyl 98.1 4E-05 1.4E-09 65.4 12.9 65 532-597 62-126 (162)
179 2xev_A YBGF; tetratricopeptide 98.1 7.9E-05 2.7E-09 60.5 14.0 99 97-210 5-105 (129)
180 1wao_1 Serine/threonine protei 98.1 1.3E-05 4.3E-10 82.1 10.3 117 474-592 16-134 (477)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.1E-05 1.4E-09 77.9 14.0 132 463-595 267-413 (457)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 6E-05 2E-09 76.7 15.2 133 428-561 267-414 (457)
183 1dce_A Protein (RAB geranylger 98.1 0.00029 9.8E-09 73.4 20.5 173 479-656 44-244 (567)
184 1wao_1 Serine/threonine protei 98.0 1.4E-05 4.9E-10 81.7 10.3 126 433-560 10-137 (477)
185 3rkv_A Putative peptidylprolyl 98.0 8E-05 2.7E-09 63.5 13.2 100 467-568 14-130 (162)
186 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.7E-10 64.5 7.2 84 478-561 4-89 (117)
187 1ihg_A Cyclophilin 40; ppiase 98.0 6.1E-05 2.1E-09 74.1 13.9 140 464-624 223-362 (370)
188 1ihg_A Cyclophilin 40; ppiase 98.0 6.5E-05 2.2E-09 73.8 13.4 140 429-589 223-362 (370)
189 3k9i_A BH0479 protein; putativ 98.0 1.8E-05 6.3E-10 63.2 7.5 85 512-597 3-90 (117)
190 2hr2_A Hypothetical protein; a 98.0 0.00012 4.2E-09 60.6 12.4 62 535-596 59-130 (159)
191 2hr2_A Hypothetical protein; a 98.0 0.00012 4E-09 60.8 12.2 62 570-631 59-130 (159)
192 1dce_A Protein (RAB geranylger 97.9 0.00061 2.1E-08 71.0 20.0 172 410-585 45-243 (567)
193 1klx_A Cysteine rich protein B 97.9 0.00046 1.6E-08 56.7 14.9 109 479-597 10-126 (138)
194 1klx_A Cysteine rich protein B 97.8 0.00065 2.2E-08 55.8 15.1 111 513-633 9-127 (138)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 4.7E-05 1.6E-09 74.0 9.3 94 535-631 232-327 (338)
196 2if4_A ATFKBP42; FKBP-like, al 97.8 5E-05 1.7E-09 73.8 8.3 132 463-597 178-328 (338)
197 2l6j_A TPR repeat-containing p 97.7 3.4E-05 1.2E-09 60.7 5.4 62 500-561 5-66 (111)
198 1zu2_A Mitochondrial import re 97.7 8.7E-05 3E-09 61.4 7.8 95 512-609 15-130 (158)
199 3n71_A Histone lysine methyltr 97.7 0.00026 8.9E-09 71.8 12.9 88 472-559 317-419 (490)
200 2l6j_A TPR repeat-containing p 97.7 0.00026 9E-09 55.4 10.4 64 533-597 4-67 (111)
201 2kat_A Uncharacterized protein 97.7 0.00015 5.1E-09 57.5 8.8 79 517-596 3-81 (115)
202 1zu2_A Mitochondrial import re 97.7 0.00012 4.1E-09 60.5 8.2 97 476-575 14-131 (158)
203 3n71_A Histone lysine methyltr 97.6 0.00042 1.4E-08 70.3 12.6 133 102-244 317-463 (490)
204 2kat_A Uncharacterized protein 97.6 0.00033 1.1E-08 55.5 9.5 79 482-561 3-81 (115)
205 1na3_A Designed protein CTPR2; 97.6 0.00062 2.1E-08 50.9 10.6 57 505-561 15-71 (91)
206 1na3_A Designed protein CTPR2; 97.5 0.0014 4.6E-08 48.9 10.9 82 464-546 9-90 (91)
207 3ly7_A Transcriptional activat 97.4 0.0034 1.2E-07 59.9 14.9 74 565-642 274-347 (372)
208 3ma5_A Tetratricopeptide repea 97.3 0.0012 4.1E-08 50.6 9.2 64 532-596 6-69 (100)
209 3ma5_A Tetratricopeptide repea 97.2 0.0018 6.2E-08 49.5 9.3 64 498-561 6-69 (100)
210 3ly7_A Transcriptional activat 97.1 0.007 2.4E-07 57.7 13.4 75 529-607 273-347 (372)
211 3lvg_A Clathrin heavy chain 1; 96.9 7E-07 2.4E-11 86.1 -15.7 205 144-372 52-276 (624)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0038 1.3E-07 47.4 7.4 54 508-561 9-63 (99)
213 3qww_A SET and MYND domain-con 96.8 0.0063 2.1E-07 60.6 10.5 63 534-596 341-410 (433)
214 4ady_A RPN2, 26S proteasome re 96.8 0.85 2.9E-05 49.3 37.3 350 293-653 343-721 (963)
215 3bee_A Putative YFRE protein; 96.6 0.027 9.3E-07 42.0 10.4 67 497-563 4-73 (93)
216 3qww_A SET and MYND domain-con 96.6 0.0078 2.7E-07 59.9 9.5 61 290-350 341-408 (433)
217 3bee_A Putative YFRE protein; 96.5 0.017 5.7E-07 43.2 9.1 67 92-176 4-73 (93)
218 3qwp_A SET and MYND domain-con 96.5 0.019 6.5E-07 57.2 12.1 88 509-596 297-399 (429)
219 2kc7_A BFR218_protein; tetratr 96.5 0.0074 2.5E-07 45.7 7.2 65 471-536 7-72 (99)
220 1pc2_A Mitochondria fission pr 96.5 0.023 8E-07 46.3 10.0 78 552-631 17-99 (152)
221 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.3E-06 56.6 19.2 149 262-452 610-759 (814)
222 3qwp_A SET and MYND domain-con 96.4 0.016 5.6E-07 57.7 10.8 94 258-351 294-398 (429)
223 1wy6_A Hypothetical protein ST 96.2 0.32 1.1E-05 38.1 14.9 58 540-598 98-155 (172)
224 3lvg_A Clathrin heavy chain 1; 96.2 3.5E-06 1.2E-10 81.4 -16.1 119 180-316 53-171 (624)
225 3u64_A Protein TP_0956; tetrat 96.2 0.037 1.3E-06 50.5 10.7 93 515-607 179-281 (301)
226 4h7y_A Dual specificity protei 96.1 0.074 2.5E-06 42.7 10.9 107 142-250 9-128 (161)
227 3mkq_A Coatomer beta'-subunit; 96.1 0.48 1.6E-05 51.9 22.0 46 439-490 662-707 (814)
228 1pc2_A Mitochondria fission pr 96.1 0.07 2.4E-06 43.5 11.0 79 482-561 16-99 (152)
229 1wy6_A Hypothetical protein ST 96.1 0.29 9.8E-06 38.4 13.5 65 500-564 92-156 (172)
230 4ady_A RPN2, 26S proteasome re 95.7 3 0.0001 45.2 35.6 272 367-649 382-672 (963)
231 2v5f_A Prolyl 4-hydroxylase su 95.7 0.069 2.4E-06 40.8 9.2 66 532-597 4-75 (104)
232 2v5f_A Prolyl 4-hydroxylase su 95.7 0.12 4E-06 39.5 10.4 65 467-531 8-78 (104)
233 3u64_A Protein TP_0956; tetrat 95.4 0.12 4.3E-06 47.1 10.9 95 549-645 179-284 (301)
234 3mkq_B Coatomer subunit alpha; 95.3 1.1 3.8E-05 37.5 16.9 102 154-276 13-114 (177)
235 3mkq_B Coatomer subunit alpha; 95.3 1.1 3.8E-05 37.5 17.2 44 441-490 17-60 (177)
236 4h7y_A Dual specificity protei 94.9 0.3 1E-05 39.3 10.3 62 478-540 74-135 (161)
237 1nzn_A CGI-135 protein, fissio 94.5 0.25 8.5E-06 38.7 8.9 86 549-638 17-107 (126)
238 1nzn_A CGI-135 protein, fissio 94.2 0.22 7.7E-06 38.9 8.1 83 514-597 16-103 (126)
239 4b4t_P 26S proteasome regulato 92.3 9.8 0.00034 37.8 19.2 244 407-651 29-306 (445)
240 4gns_B Protein CSD3, chitin bi 91.6 2.6 8.9E-05 44.7 14.2 51 578-629 347-397 (754)
241 4gns_B Protein CSD3, chitin bi 91.3 1 3.4E-05 47.8 10.7 49 602-652 612-660 (754)
242 3lpz_A GET4 (YOR164C homolog); 90.8 11 0.00036 35.4 21.7 112 96-239 37-159 (336)
243 4fhn_B Nucleoporin NUP120; pro 90.6 9.3 0.00032 43.5 18.7 86 325-412 900-989 (1139)
244 3o48_A Mitochondria fission 1 90.5 4.7 0.00016 31.7 11.1 72 565-638 37-111 (134)
245 2ff4_A Probable regulatory pro 90.5 2.1 7.1E-05 41.8 11.6 73 533-606 171-248 (388)
246 4fhn_B Nucleoporin NUP120; pro 90.4 7.6 0.00026 44.2 17.7 152 72-231 826-986 (1139)
247 2ff4_A Probable regulatory pro 89.9 1.3 4.5E-05 43.3 9.6 71 502-572 174-249 (388)
248 1qsa_A Protein (soluble lytic 89.7 21 0.00071 37.1 35.8 394 37-489 11-438 (618)
249 3lpz_A GET4 (YOR164C homolog); 89.6 14 0.00047 34.7 21.8 81 532-631 135-215 (336)
250 1y8m_A FIS1; mitochondria, unk 89.3 7.1 0.00024 31.1 12.9 72 565-638 36-110 (144)
251 1v54_E Cytochrome C oxidase po 89.1 1.6 5.6E-05 32.1 6.9 62 548-610 25-86 (109)
252 3o48_A Mitochondria fission 1 88.9 4 0.00014 32.1 9.6 67 495-561 36-106 (134)
253 1y8m_A FIS1; mitochondria, unk 88.7 7.7 0.00026 30.9 11.2 66 496-561 36-105 (144)
254 4b4t_P 26S proteasome regulato 88.5 21 0.00071 35.4 20.5 94 293-386 141-245 (445)
255 3txn_A 26S proteasome regulato 87.6 21 0.00072 34.5 17.5 92 538-629 104-207 (394)
256 2wpv_A GET4, UPF0363 protein Y 86.2 21 0.00073 33.1 21.8 26 532-557 133-158 (312)
257 2wpv_A GET4, UPF0363 protein Y 86.1 21 0.00073 33.1 22.4 110 328-452 37-157 (312)
258 1v54_E Cytochrome C oxidase po 86.1 8.5 0.00029 28.4 9.4 63 479-541 25-87 (109)
259 3ffl_A Anaphase-promoting comp 84.3 6.9 0.00024 32.2 9.1 20 574-593 128-147 (167)
260 2y69_E Cytochrome C oxidase su 83.4 5.2 0.00018 31.3 7.4 62 548-610 68-129 (152)
261 4b4t_R RPN7, 26S proteasome re 82.6 25 0.00087 34.6 14.6 58 502-559 134-194 (429)
262 3ffl_A Anaphase-promoting comp 80.2 9.3 0.00032 31.4 8.4 124 96-244 22-150 (167)
263 2y69_E Cytochrome C oxidase su 80.1 19 0.00064 28.3 9.4 62 480-541 69-130 (152)
264 1zbp_A Hypothetical protein VP 78.8 37 0.0013 30.5 15.3 114 507-632 5-129 (273)
265 3esl_A Checkpoint serine/threo 75.4 25 0.00086 30.0 10.0 55 512-566 92-148 (202)
266 3esl_A Checkpoint serine/threo 75.0 29 0.00099 29.6 10.2 58 546-603 92-150 (202)
267 4b4t_R RPN7, 26S proteasome re 73.1 27 0.00091 34.4 11.4 98 326-423 133-237 (429)
268 2uwj_G Type III export protein 70.2 30 0.001 25.5 9.0 84 231-326 21-104 (115)
269 2uwj_G Type III export protein 69.6 31 0.001 25.4 7.8 13 543-555 49-61 (115)
270 2p58_C Putative type III secre 69.4 31 0.0011 25.4 9.5 78 231-319 22-99 (116)
271 1zbp_A Hypothetical protein VP 69.1 22 0.00075 32.0 8.6 56 475-531 8-63 (273)
272 2p58_C Putative type III secre 68.7 32 0.0011 25.3 8.5 47 543-595 50-96 (116)
273 3ltm_A Alpha-REP4; protein eng 68.5 56 0.0019 27.9 17.2 79 566-652 124-202 (211)
274 3eiq_C Programmed cell death p 68.1 46 0.0016 31.6 11.1 26 149-174 57-82 (358)
275 3eiq_C Programmed cell death p 67.3 78 0.0027 30.0 12.5 25 327-351 57-81 (358)
276 1wdy_A 2-5A-dependent ribonucl 66.2 53 0.0018 29.5 11.5 6 157-162 13-18 (285)
277 3eu9_A Huntingtin-interacting 64.3 49 0.0017 28.8 10.6 19 258-276 46-64 (240)
278 4a1g_A Mitotic checkpoint seri 64.2 54 0.0018 26.5 9.2 49 518-566 84-134 (152)
279 3txn_A 26S proteasome regulato 64.0 1.1E+02 0.0037 29.6 23.6 93 329-421 104-208 (394)
280 4a1g_A Mitotic checkpoint seri 61.5 63 0.0022 26.1 9.2 51 552-602 84-135 (152)
281 1wgl_A TOLL-interacting protei 59.8 23 0.00077 23.2 5.1 38 49-86 14-51 (59)
282 2wvi_A Mitotic checkpoint seri 58.5 75 0.0026 26.1 9.3 49 518-566 79-129 (164)
283 1k1a_A B-cell lymphoma 3-encod 57.3 75 0.0026 27.6 10.5 83 190-276 15-101 (241)
284 3kae_A CDC27, possible protein 56.2 52 0.0018 27.1 7.6 28 396-423 116-143 (242)
285 2wvi_A Mitotic checkpoint seri 54.8 88 0.003 25.7 9.6 55 551-605 78-133 (164)
286 3kea_A K1L; tropism, ANK repea 53.8 1.3E+02 0.0044 27.2 11.7 14 262-275 39-52 (285)
287 1wdy_A 2-5A-dependent ribonucl 53.5 1.2E+02 0.0042 26.9 12.7 21 407-427 192-212 (285)
288 3eu9_A Huntingtin-interacting 52.8 41 0.0014 29.3 7.9 12 188-199 46-57 (240)
289 2zu6_B Programmed cell death p 52.2 79 0.0027 29.2 9.6 58 149-208 6-65 (307)
290 4b4t_S RPN3, 26S proteasome re 51.2 88 0.003 31.3 10.2 65 181-245 231-299 (523)
291 3kea_A K1L; tropism, ANK repea 51.1 1.4E+02 0.0048 27.0 11.4 19 257-275 65-83 (285)
292 3hra_A Ankyrin repeat family p 50.0 54 0.0019 27.6 8.0 18 259-276 77-94 (201)
293 3jxi_A Vanilloid receptor-rela 48.5 40 0.0014 30.0 7.1 118 153-275 9-161 (260)
294 1qsa_A Protein (soluble lytic 47.8 2.6E+02 0.0087 29.0 38.5 199 408-626 228-436 (618)
295 2d2s_A Exocyst complex compone 47.6 1.3E+02 0.0046 26.4 9.9 89 505-596 24-119 (235)
296 2dhy_A CUE domain-containing p 46.9 38 0.0013 22.8 4.7 38 49-86 23-60 (67)
297 1bpo_A Protein (clathrin); cla 46.5 1.4E+02 0.0048 29.3 10.4 62 57-122 328-389 (494)
298 1n11_A Ankyrin; clathrin, BAND 45.4 2.2E+02 0.0075 27.6 13.3 22 577-602 350-371 (437)
299 2d2s_A Exocyst complex compone 45.4 1.3E+02 0.0043 26.5 9.4 89 152-243 24-118 (235)
300 1bpo_A Protein (clathrin); cla 44.8 2.4E+02 0.0081 27.8 11.7 125 142-276 357-481 (494)
301 4aez_C MAD3, mitotic spindle c 41.2 76 0.0026 27.5 7.0 51 551-601 132-183 (223)
302 3hra_A Ankyrin repeat family p 40.9 1.6E+02 0.0053 24.5 10.3 15 262-276 13-27 (201)
303 4aez_C MAD3, mitotic spindle c 39.9 49 0.0017 28.7 5.6 51 516-566 131-183 (223)
304 1k1a_A B-cell lymphoma 3-encod 39.9 1.8E+02 0.0062 25.0 10.7 84 223-314 13-101 (241)
305 3d5l_A Regulatory protein RECX 39.7 1.9E+02 0.0064 25.1 10.4 52 305-357 92-143 (221)
306 2ion_A PDCD4, programmed cell 39.6 1.3E+02 0.0045 24.2 7.9 22 469-490 14-35 (152)
307 4gq2_M Nucleoporin NUP120; bet 39.1 2.2E+02 0.0075 31.4 12.2 45 71-121 823-867 (950)
308 2fu4_A Ferric uptake regulatio 38.8 82 0.0028 21.9 6.0 61 593-654 7-68 (83)
309 3kae_A CDC27, possible protein 37.3 1.5E+02 0.0051 24.4 7.6 26 569-594 115-140 (242)
310 2zu6_B Programmed cell death p 37.0 2E+02 0.007 26.5 9.8 23 220-242 7-29 (307)
311 1ug3_A EIF4GI, eukaryotic prot 36.4 1.9E+02 0.0065 27.1 9.8 64 149-213 14-78 (339)
312 1otr_A Protein CUE2; protein-p 36.2 55 0.0019 20.4 3.9 35 50-84 10-44 (49)
313 2nsz_A Programmed cell death p 35.7 1.5E+02 0.0053 23.0 9.3 21 505-525 13-33 (129)
314 4gq2_M Nucleoporin NUP120; bet 35.3 2.2E+02 0.0076 31.4 11.5 112 141-265 835-950 (950)
315 2ijq_A Hypothetical protein; s 35.1 1.5E+02 0.0051 24.2 7.5 54 543-596 42-103 (161)
316 2fe3_A Peroxide operon regulat 33.7 1.2E+02 0.0041 24.1 6.9 59 594-653 13-71 (145)
317 1ug3_A EIF4GI, eukaryotic prot 33.4 1E+02 0.0036 29.0 7.5 25 362-386 14-38 (339)
318 1iw4_A Trypsin inhibitor; solu 33.2 7.5 0.00026 22.9 -0.3 7 2-8 8-14 (55)
319 1n11_A Ankyrin; clathrin, BAND 32.4 3.5E+02 0.012 26.1 12.5 111 153-276 18-135 (437)
320 4b4t_S RPN3, 26S proteasome re 31.8 3.7E+02 0.013 27.0 11.1 62 216-277 231-296 (523)
321 2xig_A Ferric uptake regulatio 30.7 1.7E+02 0.0059 23.4 7.4 61 593-654 17-77 (150)
322 1mzb_A Ferric uptake regulatio 30.5 1.2E+02 0.0042 23.7 6.3 59 594-653 9-68 (136)
323 3ctd_A Putative ATPase, AAA fa 30.4 2.6E+02 0.0088 23.9 10.0 68 534-601 33-108 (213)
324 2etb_A Transient receptor pote 30.4 2E+02 0.0069 25.1 8.8 117 153-275 6-157 (256)
325 3pvs_A Replication-associated 30.2 4E+02 0.014 26.1 15.9 99 91-191 191-300 (447)
326 2w57_A Ferric uptake regulatio 29.1 1.3E+02 0.0045 24.1 6.4 60 594-654 8-68 (150)
327 2rfa_A Transient receptor pote 28.4 2.8E+02 0.0094 23.6 10.8 21 405-425 162-182 (232)
328 3jxi_A Vanilloid receptor-rela 28.3 47 0.0016 29.5 4.1 89 188-276 9-115 (260)
329 3l6a_A Eukaryotic translation 28.1 3.9E+02 0.013 25.3 11.0 213 255-476 16-245 (364)
330 3aji_A 26S proteasome non-ATPa 27.6 2.8E+02 0.0097 23.5 10.6 18 259-276 11-28 (231)
331 3pvs_A Replication-associated 27.5 4.5E+02 0.015 25.8 14.1 32 442-473 268-299 (447)
332 2ion_A PDCD4, programmed cell 27.3 1.9E+02 0.0066 23.2 7.0 65 148-213 11-77 (152)
333 3aji_A 26S proteasome non-ATPa 26.7 2.9E+02 0.01 23.4 9.8 19 153-171 10-28 (231)
334 2rfa_A Transient receptor pote 25.5 3.1E+02 0.011 23.3 11.0 59 330-392 124-184 (232)
335 3ubw_A 14-3-3E, 14-3-3 protein 25.4 3.6E+02 0.012 24.0 12.3 48 584-631 172-227 (261)
336 3eyy_A Putative iron uptake re 25.1 1.2E+02 0.0041 24.2 5.4 58 594-653 10-67 (145)
337 3b7b_A Euchromatic histone-lys 25.0 3E+02 0.01 23.5 8.8 219 222-458 14-236 (237)
338 1s6c_A KV4 potassium channel-i 24.6 2.8E+02 0.0096 22.5 10.7 42 233-276 140-181 (183)
339 2r9g_A AAA ATPase, central reg 24.4 3.3E+02 0.011 23.1 10.4 60 546-606 27-91 (204)
340 3bu8_A Telomeric repeat-bindin 24.3 2.3E+02 0.008 24.3 6.9 69 549-619 88-163 (235)
341 2fe3_A Peroxide operon regulat 24.1 2.2E+02 0.0076 22.5 6.9 60 558-618 12-71 (145)
342 2nsz_A Programmed cell death p 23.8 2.6E+02 0.0087 21.7 9.5 72 536-608 10-83 (129)
343 2r9g_A AAA ATPase, central reg 23.4 3.4E+02 0.012 23.0 9.3 36 442-478 27-62 (204)
344 3bge_A Predicted ATPase; struc 22.9 3.5E+02 0.012 22.9 9.7 36 547-582 21-56 (201)
345 2cos_A Serine/threonine protei 22.9 87 0.003 19.9 3.0 37 589-630 11-49 (54)
346 4g8k_A 2-5A-dependent ribonucl 22.7 4.4E+02 0.015 24.1 15.1 8 157-164 33-40 (337)
347 2pnn_A Transient receptor pote 22.7 2.8E+02 0.0094 24.5 8.3 119 152-275 16-169 (273)
348 2keb_A DNA polymerase subunit 22.4 2.3E+02 0.0079 20.7 6.5 31 552-582 28-58 (101)
349 2ijq_A Hypothetical protein; s 22.0 3.2E+02 0.011 22.2 8.0 51 158-208 44-102 (161)
350 4ets_A Ferric uptake regulatio 21.9 2.3E+02 0.0078 23.0 6.6 67 585-652 15-83 (162)
351 1mzb_A Ferric uptake regulatio 21.8 2.2E+02 0.0074 22.3 6.3 34 583-616 33-66 (136)
352 3t8k_A Uncharacterized protein 21.7 3.4E+02 0.012 22.4 10.2 90 300-393 14-108 (186)
353 2keb_A DNA polymerase subunit 21.7 2.4E+02 0.0082 20.6 6.1 62 586-649 27-93 (101)
354 2o03_A Probable zinc uptake re 21.3 1.7E+02 0.0057 22.8 5.5 44 152-195 16-59 (131)
355 2br9_A 14-3-3E, 14-3-3 protein 21.0 4.2E+02 0.014 23.2 11.4 57 434-490 10-67 (234)
356 3ygs_P Procaspase 9; apoptosis 20.6 1.5E+02 0.0051 21.6 4.7 35 161-199 52-86 (97)
357 1o9d_A 14-3-3-like protein C; 20.4 4.6E+02 0.016 23.4 11.0 58 434-491 13-73 (260)
358 4g8k_A 2-5A-dependent ribonucl 20.2 5E+02 0.017 23.7 13.3 10 558-567 319-328 (337)
359 3uzd_A 14-3-3 protein gamma; s 20.1 4.5E+02 0.016 23.2 11.6 48 584-631 147-202 (248)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=350.45 Aligned_cols=489 Identities=12% Similarity=0.044 Sum_probs=405.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56778888999999999999999999988854 567788888889999999999999999887653 57888889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 224 YALCKECKLEEALSLYYRMLKS---------------GIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++ ...+ +.+
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~-p~~ 233 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA---LMVD-AKC 233 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHHC-TTC
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhC-chh
Confidence 9999999999999988853322 12335778888888888888888888888884 3321 123
Q ss_pred hhhHHHHHHHHHhcCChHHHH--HH-HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAE--EI-RYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNST 365 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 365 (658)
...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+|+.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 445555554443332222211 11 444444443445566777788899999999999999999876 4789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (658)
+.+|.+.|++++|..+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+..+ .+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccH
Confidence 99999999999999999999986543 788999999999999999999999999997654 3788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998853 2468899999999999999999999999999874 347889999999999999999999999999
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN--KVGYNILINFLCKFGCYQQARELMKVMILHGI 599 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 599 (658)
.+..+.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 9998889999999999999999999999999999875 56777 7899999999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhh
Q 006154 600 IPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPD-NQTYNAIISPLL 649 (658)
Q Consensus 600 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 649 (658)
+.+..+|..++.+|.+.|++++|.+.++++.+. .|+ ...+..+...|.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHh
Confidence 447899999999999999999999999999984 554 466666665553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-38 Score=338.22 Aligned_cols=488 Identities=12% Similarity=0.007 Sum_probs=410.1
Q ss_pred CCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
++...+..++..+.+.|++++|..++++++.. .|+..++..++.+|.+.|++++|..+|++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------------------TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------------------CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 46778999999999999999999999998751 23668889999999999999999999999
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC---------------CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC---------------GYVENVNTFNLVIYALCKECKLEEAL 236 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------g~~~~~~~~~~l~~~~~~~g~~~~A~ 236 (658)
+... .+++.+++.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8654 678999999999999999999999999964322 23446889999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH---HHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 237 SLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKL---FRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
++|++|.+.+.. +...+..+...+...++.+.+... +.. +...+..+...+|+.++..|.+.|++++|.++|+
T Consensus 221 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 221 ECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYST---YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHH---HHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcc---cccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999986432 445566665544433332222211 333 3333444556677888899999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 314 AMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD 393 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 393 (658)
++.+. +++..+++.++..|.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|..+++++.+.. +.+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 99866 689999999999999999999999999999987643 77889999999999999999999999998653 447
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
..++..++..|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 889999999999999999999999999887544 788999999999999999999999999998643 478899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-HhhHHHHHHHHHHc
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI------GLLD-AITYNTLINGYFIN 546 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~ 546 (658)
|.+.|++++|.++|+++.+... .+..+|..++..+.+.|++++|.++|+++.+. .+.+ ..+|..++.+|.+.
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999998643 47889999999999999999999999999876 2222 78999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
|++++|.+.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 530 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999998864 4578999999999999999999999999999863 23456666665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-27 Score=241.14 Aligned_cols=380 Identities=16% Similarity=0.050 Sum_probs=221.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK 231 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 231 (658)
+...+.+.|++++|.+.++.+.+..+ .+...+..+...+...|++++|...++..++.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34566777888888888877776532 245566666677777777777777777777653 4566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCC-ChhhHHHHHHHHHhcCChHHHHH
Q 006154 232 LEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLP-NSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 232 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
+++|.+.|+++.+..+ .+..+|..+..++...|++++|.+.|+++ .. ..| +...+..+...+...|++++|.+
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSA---LQ--YNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHH---HH--HCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHH---HH--hCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 7777777777766421 13446777777777777777777777763 22 123 24455556666666677777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 390 (658)
.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...|..+...+...|++++|...+++......
T Consensus 157 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777766653 444566666666666666666666666666655321 344555555566666666666666655554322
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
.+..++..+...+.+.|++++|.+.++++.+.++. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus 235 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 13445555555555555555555555555554332 34445555555555555555555555555432 2344455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..|.+..+|..+...+..
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 555555555555555555554431 22344444455555555555555555555554444444444444444433
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.6e-27 Score=239.57 Aligned_cols=380 Identities=13% Similarity=0.055 Sum_probs=209.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcC
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLG 303 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 303 (658)
..+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++.. ... .+.+..+|..+...+.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a---~~~-~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLA---IKQ-NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH---Hhc-CCCchHHHHHHHHHHHHCC
Confidence 3344555555555555555544211 2334444444445555555555555442 111 1223444555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 006154 304 RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLS 383 (658)
Q Consensus 304 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 383 (658)
++++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. |+
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~------------------------- 133 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PD------------------------- 133 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TT-------------------------
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-------------------------
Confidence 5555555555544432 2233344444444444555555554444444432 21
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006154 384 DMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD 463 (658)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 463 (658)
+...+..+...+...|++++|.+.++++.+..+. +..+|..+...+...|++++|...|+++.+.+. .+
T Consensus 134 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 202 (388)
T 1w3b_A 134 ---------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NF 202 (388)
T ss_dssp ---------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred ---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Confidence 2233344444445555555555555555554322 445555555555566666666666655555422 23
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|+..+++..+..+ .+..++..+...+...|++++|...++++.+..+.++.+|..++..+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 45555566666666666666666666665422 24556666666666666667776666666666666666677777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+.|++++|...++++.+.. +.+..++..++..+.+.|++++|++.++++.+. .+.+..++..+...+.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777766642 445666667777777777777777777776654 2334556666777777777777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 006154 624 ELHDDMVLSGVSP-DNQTYNAIISPLLGEK 652 (658)
Q Consensus 624 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 652 (658)
+.++++.+ ..| +...|..+...+...|
T Consensus 360 ~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 360 MHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 77777765 334 3355555555555444
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1e-29 Score=260.69 Aligned_cols=204 Identities=16% Similarity=0.226 Sum_probs=135.9
Q ss_pred HHHHHHHHHhCCCccCHH-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HHH
Q 006154 165 AYDVIQKLKVKGHSVSIH-AWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK---------LEE 234 (658)
Q Consensus 165 A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---------~~~ 234 (658)
+..+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 444555565555555443 4666777777777777777777777777777777777777777765543 466
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++ |...|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~---M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQ---MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777 56667777777777777777777777777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh
Q 006154 315 MIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA 371 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 371 (658)
|.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777777776654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.8e-29 Score=258.96 Aligned_cols=207 Identities=16% Similarity=0.204 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------H
Q 006154 198 GRFWKLYKEMVSCGYVENV-NTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD---------L 267 (658)
Q Consensus 198 ~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~ 267 (658)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777766665443 45788899999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 268 EFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLC 347 (658)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 347 (658)
+.|.++|++ |...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|
T Consensus 87 ~~A~~lf~~---M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 87 SRGFDIFKQ---MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 788888888 77788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006154 348 DEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN 407 (658)
Q Consensus 348 ~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (658)
++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..++..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888888888888888888888887753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-24 Score=225.19 Aligned_cols=439 Identities=8% Similarity=-0.050 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006154 146 PAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYA 225 (658)
Q Consensus 146 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (658)
...+..+...+.+.|++++|...|+++.+.+ |++.+|..+..++.+.|++++|...++++++.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3567788899999999999999999999975 689999999999999999999999999999875 4567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCCh
Q 006154 226 LCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRV 305 (658)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 305 (658)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+.. +...+..|+...+..-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGD---IDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999998753 3455555555555544434433333322 11111111111111111001111111
Q ss_pred HHHHHHHHHHHHcCC---------CCChhhHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------cHh
Q 006154 306 EFAEEIRYAMIKAGI---------DCNVRTYATLIDGYAR---GGSSEEALRLCDEMVK-----RGLMP--------NNV 360 (658)
Q Consensus 306 ~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~~p--------~~~ 360 (658)
.....+...+..... +.+...+......+.. .|++++|...++++.+ ....| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111110 1123344444444443 6777777777777766 31111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
.+..+...+...|++++|...++++.+.... ...+..+...+...|++++|.+.++++.+..+. +..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHH
Confidence 5666667777777777777777777665433 666666777777777777777777777665433 5556666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKS 520 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 520 (658)
..|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777777766532 245566666666777777777777777766642 2245566667777777777777777
Q ss_pred HHHHHHHcCCCC------HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 521 LLQASQRIGLLD------AITYNTLINGYFI---NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 521 ~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.++++....+.+ ...+..++..+.. .|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777766654443 2266777777777 777777777777776642 334566667777777777777777777
Q ss_pred HHHHHc
Q 006154 592 KVMILH 597 (658)
Q Consensus 592 ~~~~~~ 597 (658)
+++.+.
T Consensus 473 ~~a~~~ 478 (514)
T 2gw1_A 473 EESADL 478 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.7e-24 Score=225.20 Aligned_cols=446 Identities=8% Similarity=-0.061 Sum_probs=333.2
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 181 IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINE 260 (658)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 260 (658)
...+......+.+.|++++|+..|+++++.+ |+..++..+..++.+.|++++|.+.++++.+.++ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567777888999999999999999999875 7899999999999999999999999999988743 256788999999
Q ss_pred HHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 261 ACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 261 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
+...|++++|...|+++ ...+ +++......++..+........+.+.+..+...+..|+......-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVL---SLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHH---HHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHH---HhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999994 3332 2344455555555555444444444443333322222222111111111111111
Q ss_pred HHHHHHHHHHHHCCC---------CCcHhHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCChh
Q 006154 341 EEALRLCDEMVKRGL---------MPNNVVYNSTIHWLFA---EGDVEGALFVLSDMID-----KHI--------CPDHF 395 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~---------~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~ 395 (658)
.....+...+..... ..+...+......+.. .|++++|...++++.+ ... +.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111111111 1124445555555554 8999999999999988 311 22356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
++..+...+...|++++|...++++.+..+. ...+..+...+...|++++|...++++..... .+...+..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHH
Confidence 7788889999999999999999999988655 88899999999999999999999999988643 36778888999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+..+.+..++..++..+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999987443 6778889999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHCCCC-CC----hHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 556 FSEMRNVGIA-VN----KVGYNILINFLCK---FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 556 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
++++.+.... ++ ...+..++..+.. .|++++|.+.++++.... +.+..++..+...+.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999764211 11 3388999999999 999999999999999863 3467788899999999999999999999
Q ss_pred HHHHCCCCCCHHH
Q 006154 628 DMVLSGVSPDNQT 640 (658)
Q Consensus 628 ~m~~~g~~p~~~~ 640 (658)
++.+ ..|+...
T Consensus 474 ~a~~--~~~~~~~ 484 (514)
T 2gw1_A 474 ESAD--LARTMEE 484 (514)
T ss_dssp HHHH--HCSSHHH
T ss_pred HHHH--hccccHH
Confidence 9998 4666543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=2.3e-22 Score=212.82 Aligned_cols=363 Identities=10% Similarity=0.004 Sum_probs=194.5
Q ss_pred HHhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 94 LESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
++.+...+..+.+.|++++|...++++++ ..|.++.++..++.+|.+.|++++|.+.|+++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 86 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIE------------------LDPNEPVFYSNISACYISTGDLEKVIEFTTKAL 86 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh------------------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888888888888888888876 456778888888888888888888888888888
Q ss_pred hCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCh
Q 006154 174 VKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGI--WPNV 251 (658)
Q Consensus 174 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~ 251 (658)
+.++. ++.++..+...+...|++++|...|+ .... .|+. ....+..+...+....|...++++..... .+..
T Consensus 87 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 160 (537)
T 3fp2_A 87 EIKPD-HSKALLRRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CC
T ss_pred hcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 86533 67788888888888888888888886 3332 2221 22223344555566778888888765311 1111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChh-hHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCC
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSV-THNCIINGFCK--------LGRVEFAEEIRYAMIKAGIDC 322 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~ 322 (658)
......+..+....+.+.+...+.. ... ..+... ....+...+.. .|++++|..+++++.+.. +.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~ 234 (537)
T 3fp2_A 161 LPSNTSLASFFGIFDSHLEVSSVNT---SSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TV 234 (537)
T ss_dssp CCCHHHHHHHHHTSCHHHHHHTSCC---CCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred cchHhHHHHHHHhcChHHHHHHHhh---ccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 2223444555566666666655544 111 112211 12222211111 135666666666666542 22
Q ss_pred Ch-------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 006154 323 NV-------RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHF 395 (658)
Q Consensus 323 ~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 395 (658)
+. .++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+... .+..
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 311 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPP 311 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHH
Confidence 21 13444444555555555555555555554 23344455555555555555555555555554322 1344
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
++..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4455555555555555555555555544322 33444444445555555555555555444432 112334444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMK 491 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~ 491 (658)
..|++++|...++++.
T Consensus 390 ~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 4445544444444443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.7e-23 Score=218.86 Aligned_cols=435 Identities=10% Similarity=0.023 Sum_probs=325.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIY 224 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 224 (658)
....+..+...+.+.|++++|.+.|+++.+..+ .++.++..+..++.+.|++++|.+.++++++.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 346788899999999999999999999999754 378999999999999999999999999999875 456888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC--cCCChhhHHHHHHHHHhc
Q 006154 225 ALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS--VLPNSVTHNCIINGFCKL 302 (658)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 302 (658)
.+...|++++|...|+. ... .|+.. ...+..+...+....|...++++ .... ..+........+..+...
T Consensus 102 ~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNEN---LSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHH---CC-------CCCCCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHH---HHhCccccccccchHhHHHHHHHh
Confidence 99999999999999974 332 23322 22344556667778899999984 3210 111112223344555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCc------HhHHHHHHH
Q 006154 303 GRVEFAEEIRYAMIKAGIDCNV-RTYATLIDGYAR--------GGSSEEALRLCDEMVKRGLMPN------NVVYNSTIH 367 (658)
Q Consensus 303 g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~ 367 (658)
.+.+.+...+...... .+.. .....+...+.. .|++++|..+++++.+...... ..++..+..
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 6666665544433322 1221 123333333222 2478999999999987643211 235667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAA 447 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (658)
.+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.+..+. +..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 8889999999999999998853 45778888888999999999999999999887654 67889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 448 AKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 448 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999988643 256778888899999999999999999998864 33677888899999999999999999999877
Q ss_pred cCCCC------HhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 528 IGLLD------AITYNTLINGYFIN----------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 528 ~~~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
..+.+ ...+..+...+... |++++|...++++.+.. +.+...+..++.++.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65432 22345556777777 99999999999998853 446778889999999999999999999
Q ss_pred HHHHHc
Q 006154 592 KVMILH 597 (658)
Q Consensus 592 ~~~~~~ 597 (658)
+++.+.
T Consensus 486 ~~al~~ 491 (537)
T 3fp2_A 486 EDSAIL 491 (537)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999985
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.4e-22 Score=206.37 Aligned_cols=316 Identities=13% Similarity=0.094 Sum_probs=174.3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHH
Q 006154 214 ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHN 293 (658)
Q Consensus 214 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 293 (658)
.+...+..+...+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...|+++ ... .+.+..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---l~~-~p~~~~~~~ 98 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKV---IQL-KMDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHH---Hhc-CCCcHHHHH
Confidence 3455566666666666666666666666655422 24555666666666666666666666663 221 112345555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHH
Q 006154 294 CIINGFCKLGRVEFAEEIRYAMIKAGIDCNV---RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLF 370 (658)
Q Consensus 294 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 370 (658)
.+..++.+.|++++|.+.|+++.+.. +.+. ..+..++..+.. ..+..+...+.
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~ 154 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 55666666666666666666655442 2222 344443332100 01112233355
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006154 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQ 450 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 450 (658)
..|++++|...++++.+... .+..++..++..+.+.|++++|.+.++++.+..+. +..++..+...+...|++++|..
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 55666666666666555322 24555555666666666666666666666554322 45556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCC
Q 006154 451 LLSSMIVRGLIPDIITYGTL------------IDGYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDAS 514 (658)
Q Consensus 451 ~~~~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 514 (658)
.++++..... .+...+..+ ...+.+.|++++|...|+++.+.... + ...+..+...+.+.|+
T Consensus 233 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 233 EVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCC
Confidence 6666654321 122223222 55566666666666666666653221 1 2355566666666666
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+++|...++++.+..+.+..+|..++.+|...|++++|...++++.+.
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666656666666666666666666666666666663
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8.6e-22 Score=203.34 Aligned_cols=371 Identities=13% Similarity=0.032 Sum_probs=267.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYAT 329 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 329 (658)
+...+..+...+.+.|++++|+.+|+++ ... .+.+..++..+..++...|++++|...++++.+.+ +.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~---l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAA---VDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH---HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4445666666666666666666666663 221 22345556666666666666666666666666554 444555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNN---VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCR 406 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (658)
++..|...|++++|.+.|+++.+.... +. ..+..++..+... .+..+...+..
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~ 155 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFG 155 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 666666666666666666666554211 22 3333333322111 12233556788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|++++|.+.++++.+..+. +..++..+..+|.+.|++++|...++++.+.. +.+..++..+...|...|++++|+..
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987654 78889999999999999999999999998763 34788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCC----HhhHHHHHHHHHHcCCHH
Q 006154 487 YENMKKVEKKPNLVIYNSI------------INGLCKDASLDAAKSLLQASQRIGLLD----AITYNTLINGYFINGKIA 550 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 550 (658)
|+++.+... .+...+..+ ...+...|++++|...++++.+..+.+ ...|..++.++.+.|+++
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 999987533 244444444 788999999999999999999988775 347889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH------------HHHhCC
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVT------------RFSKNC 617 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~------------~~~~~g 617 (658)
+|+..++++.+.. +.+...|..++.+|...|++++|.+.++++.+. .|+ ...+..+.. .|...|
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 9999999998753 446889999999999999999999999999984 454 555555552 233344
Q ss_pred -----ChHHHHHHHHH-HHHCCCCCC-----------HHHHHHHHHHhhcCCCCCcC
Q 006154 618 -----SPEEVIELHDD-MVLSGVSPD-----------NQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 618 -----~~~~A~~~~~~-m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~a 657 (658)
+.+++.+.+++ ..+ ..|| ...+..+..+|-..|+.+++
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66778888887 443 2333 23788888888888876654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1e-18 Score=174.14 Aligned_cols=298 Identities=11% Similarity=0.027 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA 371 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 371 (658)
+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 3344444444444444444444444432 333444444444444444444444444444443211 33344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CChhhHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 372 EGDVEGALFVLSDMIDKHIC--PDHFTYSI------------LTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 372 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
.|++++|...++++.+.... .+...+.. +...+...|++++|.+.++++.+..+. +...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44555554444444443110 01111111 233444444555555555444444322 3344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 438 YLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 438 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
.+...|++++|...++++.... +.+...+..+...+...|++++|...++++.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-------------------------- 215 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL-------------------------- 215 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 4444444444444444444432 1233444444444444444444444444444
Q ss_pred HHHHHHHHHHcCCCCHhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHHh
Q 006154 518 AKSLLQASQRIGLLDAITYN------------TLINGYFINGKIAEAFAMFSEMRNVGIAVN-K----VGYNILINFLCK 580 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~ 580 (658)
+..+.+...+. .++..+...|++++|...++++.+.. |+ . ..+..+..++.+
T Consensus 216 ---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 216 ---------KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp ---------HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHH
T ss_pred ---------hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHH
Confidence 43333322222 22444555666666666666655532 22 1 123345555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|++++|++.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 285 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666665531 22455555556666666666666666666655
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1.4e-18 Score=173.18 Aligned_cols=305 Identities=14% Similarity=0.099 Sum_probs=214.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 324 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
+..+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 344555556666666666666666666554321 345555566666666666666666666555422 144555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMV--GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 481 (658)
+...|++++|.+.++++.+..+. .+...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55666666666666655554320 01112211111100 011223357788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..++..+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999988643 47788999999999999999999999999999888999999999999999999999999999988
Q ss_pred CCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChHHHHHH
Q 006154 562 VGIAVNKVGYN------------ILINFLCKFGCYQQARELMKVMILHGIIPDY----VTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 562 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
.. +.+...+. .++..+.+.|++++|.+.++++.+.... +. ..+..+...+.+.|++++|.+.
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 53 23333333 3367799999999999999999986322 23 2355677889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCCCCcC
Q 006154 626 HDDMVLSGVSPDNQTYNAIISPLLGEKSAEDQ 657 (658)
Q Consensus 626 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 657 (658)
++++.+. .+.+..++..+...+...|++++|
T Consensus 295 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 295 CSEVLQM-EPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999985 234778999999999999998876
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=8.8e-16 Score=166.65 Aligned_cols=421 Identities=14% Similarity=0.124 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 143 KATPAVFDALVRACTQIGATEGAYDVIQKLKVKGH--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 143 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+|.-....+++|...|.+.+|++++++....+- .-+....+.++....+. +..+..+...+.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 34566667788889999999999999999884321 13456667777766666 445555555555422 1 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.+...+...|.+++|..+|++... ...+.+.++. ..|++++|.++.++ . -+..+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aer---v------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAER---C------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHh---c------CCHHHHHHHHHHHH
Confidence 366777888999999999988521 2223333332 67889999999887 2 14678889999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALF 380 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 380 (658)
+.|++++|.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999998664 377788889999999999999999998877764 333334458888999988885443
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006154 381 VLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL 460 (658)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 460 (658)
.. + .++...+..+...|...|++++|..+|..+ ..|..+...+++.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 32 2 345567777888999999999999999885 37888999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 461 IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 461 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
.+..+|...-.+|...|++..|......+ ..++..+..++..|.+.|.+++|..+++......+.....|+-+.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 36688888888888899988888876643 336677778999999999999999999988887765778888887
Q ss_pred HHHHHc--CCHHHHHHHHHHHHHCCCCC------ChHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCC
Q 006154 541 NGYFIN--GKIAEAFAMFSEMRNVGIAV------NKVGYNILINFLCKFGCYQQARELM-------------KVMILHGI 599 (658)
Q Consensus 541 ~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~g~ 599 (658)
..|++- ++..++.++|..-.+ ++| +...|..++-.|.+.|+++.|.... +..+. -
T Consensus 1322 iLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--k 1397 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--K 1397 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--c
Confidence 777764 345555555554333 222 4667888999999999999988322 22222 1
Q ss_pred CCCHHHHHHHHHHHHhCC---------------ChHHHHHHHH
Q 006154 600 IPDYVTYTTLVTRFSKNC---------------SPEEVIELHD 627 (658)
Q Consensus 600 ~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 627 (658)
..|...|...+..|...+ +++++.+++.
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 346667777777766555 6666666665
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.7e-16 Score=165.19 Aligned_cols=364 Identities=13% Similarity=0.018 Sum_probs=204.9
Q ss_pred HHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHH
Q 006154 166 YDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCK----ECKLEEALS 237 (658)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~ 237 (658)
.+.+....+.| ++.++..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444433 45555556655655 566666666666666543 34455555555555 556666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 006154 238 LYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRY 313 (658)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 313 (658)
+|++..+.| +...+..|...|.. .+++++|...|++
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~------------------------------------- 140 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRL------------------------------------- 140 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-------------------------------------
Confidence 666655542 34444445555544 4455555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006154 314 AMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFA----EGDVEGALFVLSDM 385 (658)
Q Consensus 314 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 385 (658)
..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|..+|++.
T Consensus 141 -a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 141 -AAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp -HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 43332 23333344444433 444555555555444432 34444444444444 45555555555555
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006154 386 IDKHICPDHFTYSILTKGLCR----NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK----SNNLAAAKQLLSSMIV 457 (658)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 457 (658)
.+.| +...+..+...|.. .++.++|.+++++..+.+ +...+..+...|.. .++.++|...|++..+
T Consensus 214 ~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 214 ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 4432 33344444444443 455555555555555543 33444445555555 5666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006154 458 RGLIPDIITYGTLIDGYCKG-----GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIG 529 (658)
Q Consensus 458 ~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 529 (658)
.| +...+..+...|... +++++|+..|++..+.+ +...+..+...+...| ++++|...+++..+.+
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 43 344445555555554 66777777777666643 3445555555555544 5677777777776653
Q ss_pred CCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 006154 530 LLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGI 599 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 599 (658)
++..+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .+++++|...|++..+.|.
T Consensus 362 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 362 --EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 56677777777777 677777777777777754 45666677777776 6777778777777777653
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.1e-16 Score=166.48 Aligned_cols=353 Identities=11% Similarity=-0.017 Sum_probs=238.6
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcC
Q 006154 144 ATPAVFDALVRACTQ----IGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVEN 215 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 215 (658)
.++.++..+...|.. .+++++|.+.|++..+.| ++.++..|...|.. .+++++|..+|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467888888999988 899999999999999875 67788889999998 899999999999999875 6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCC
Q 006154 216 VNTFNLVIYALCK----ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLP 287 (658)
Q Consensus 216 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 287 (658)
...+..+...|.. .+++++|.++|++..+.| +..++..+...|.. .+++++|.+.|++. ... .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a---~~~---~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA---AEQ---G 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHT---T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHC---C
Confidence 6777788888888 789999999999998864 56677778887776 77888888888883 333 2
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcH
Q 006154 288 NSVTHNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNN 359 (658)
Q Consensus 288 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~ 359 (658)
+...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677777777777 778888888888877764 45566667777765 677777777777776653 44
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChh
Q 006154 360 VVYNSTIHWLFA----EGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRN-----GCVKQAFKLHNQVLEEHMVGDAY 430 (658)
Q Consensus 360 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~ 430 (658)
..+..+...|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...+++..+.+ +..
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 455556666665 666777777777666543 334555555555554 56666666666665543 334
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006154 431 SYNILINYLCKSN---NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK----GGNIEGAVQVYENMKKVEKKPNLVIYN 503 (658)
Q Consensus 431 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 503 (658)
.+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 4445555554434 4555555555555542 34444445555544 455555555555555432 234444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006154 504 SIINGLCK----DASLDAAKSLLQASQRIG 529 (658)
Q Consensus 504 ~l~~~~~~----~g~~~~a~~~~~~~~~~~ 529 (658)
.+...|.. .+++++|...|++..+.+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444444 445555555555554444
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.6e-17 Score=173.13 Aligned_cols=424 Identities=10% Similarity=0.067 Sum_probs=298.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.+..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |++..|.
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~ 83 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK 83 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence 46778899999998 478999999999999999874 4478899999999999999999999999999863 6887887
Q ss_pred HHHHHH-HhcCCHHHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHHHHhcccccCC
Q 006154 221 LVIYAL-CKECKLEEALS----LYYRMLKS-GIWP-NVVCFNMIINEACQ---------VGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 221 ~l~~~~-~~~g~~~~A~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 284 (658)
..+... ...|+.++|.+ +|++.+.. |..| +...|...+..... .|+++.|..+|++. ....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a---l~~P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG---CVNP 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH---TTSC
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH---Hhch
Confidence 777533 34677777665 77776543 5444 34567777776554 68899999999994 4321
Q ss_pred cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH------HCC---C
Q 006154 285 VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMV------KRG---L 355 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~g---~ 355 (658)
..+....|..........|. .+...++. ...++++.|..++.++. +.. +
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 11111223222211100110 01111110 12344555655555421 111 2
Q ss_pred CCc--------HhHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCChH-
Q 006154 356 MPN--------NVVYNSTIHWLFAE----GDV----EGALFVLSDMIDKHICPDHFTYSILTKGLCR-------NGCVK- 411 (658)
Q Consensus 356 ~p~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~- 411 (658)
.|+ ...|...+...... ++. ..+..+|++++... +-+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 332 23555554433322 222 46778888888753 3367777777777765 68876
Q ss_pred ------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHH
Q 006154 412 ------QAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--IITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 412 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A 483 (658)
+|.+++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999999987322336788999999999999999999999999985 343 35788888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 484 VQVYENMKKVEKKPNLVIYNSIING-LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
..+|++..+... .+...+...+.. +...|++++|..+|+...+..+.++..|..++..+.+.|+.++|..+|++....
T Consensus 376 ~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 376 RMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999988632 233344333222 336899999999999999988889999999999999999999999999999886
Q ss_pred CC-CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 563 GI-AVN--KVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 563 ~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+. .|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 232 447888888888999999999999999875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.7e-18 Score=168.96 Aligned_cols=286 Identities=11% Similarity=-0.010 Sum_probs=159.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 006154 287 PNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTI 366 (658)
Q Consensus 287 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 366 (658)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 345556666666666677777777666666554 445555555666666666777776666666654321 445566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 006154 367 HWLFAEG-DVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL 445 (658)
Q Consensus 367 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (658)
..+...| ++++|...++++.+.... +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 666666666666654322 4455566666666666666666666666655433 334445555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHhcCCHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK--------KPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... +....++..+...+...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 66666666665542 22445555555566666666666666655554210 2223445555555555555555
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
|...++++.+..+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555555544455555555555555555555555555554432 22334444444444
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.1e-17 Score=172.53 Aligned_cols=429 Identities=12% Similarity=0.076 Sum_probs=303.0
Q ss_pred HHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 169 IQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIW 248 (658)
Q Consensus 169 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 248 (658)
|++.++.. +-+..+|..++. +.+.|++++|..+|+++++. .+.+...|...+..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 34444443 337888999888 47889999999999999986 3567888999999999999999999999999886 3
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHhcccccCCcCC-ChhhHHHHHHHHHh---------cCChHHHHHHHH
Q 006154 249 PNVVCFNMIINEA-CQVGDLEFALK----LFRKMGVMSGDSVLP-NSVTHNCIINGFCK---------LGRVEFAEEIRY 313 (658)
Q Consensus 249 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~ 313 (658)
|+...|...+... ...|+.++|.+ +|++. +...|..| +...|...+....+ .|+++.|..+|+
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~a--l~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFA--LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHH--HHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHH--HHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 6777777766533 35677776655 66663 22223333 45667776666554 677888888888
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH------
Q 006154 314 AMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDM------ 385 (658)
Q Consensus 314 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------ 385 (658)
+..+. +.+ ...|..........|. ..+.. ++. ...+++..|..++.++
T Consensus 155 ~al~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 155 RGCVN--PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHTTS--CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 88762 221 1222221111000110 01111 111 1234566666666552
Q ss_pred HhCC---CCCC--------hhhHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-----
Q 006154 386 IDKH---ICPD--------HFTYSILTKGLCRN----GCV----KQAFKLHNQVLEEHMVGDAYSYNILINYLCK----- 441 (658)
Q Consensus 386 ~~~~---~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 441 (658)
.+.. ++|+ ...|...+...... ++. +.+..+|++.+...+. +...|..++..+.+
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhh
Confidence 2221 2333 23555555433222 232 4788899999887544 78888888888876
Q ss_pred --cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHH
Q 006154 442 --SNNLA-------AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-L-VIYNSIINGLC 510 (658)
Q Consensus 442 --~~~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~~~ 510 (658)
.|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 79987 99999999987323346888999999999999999999999999985 443 3 58888999889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLING-YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
+.|++++|..+|+++.+..+.+...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..
T Consensus 368 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 99999999999999998876655555444333 346899999999999998853 3467889999999999999999999
Q ss_pred HHHHHHHcCC-CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 590 LMKVMILHGI-IPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 590 ~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+|++++..+. .|+ ...|..++......|+.+.+..+.+++.+.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999998632 332 457888888888999999999999999874
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.4e-18 Score=169.36 Aligned_cols=289 Identities=12% Similarity=0.014 Sum_probs=167.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN 437 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 437 (658)
+...+..+...+...|++++|..+++++.+... .+...+..++..+...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 334444455555555555555555555554322 23344444555555556666666666655554332 4455555556
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006154 438 YLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD 516 (658)
Q Consensus 438 ~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 516 (658)
.+...| ++++|...++++..... .+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 56666666666555422 23445555666666666666666666666654222 3444555666666666666
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG--------IAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+|...++++.+..+.+..++..++..+...|++++|...++++.+.. .+.+..++..++.++...|++++|+
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66666666666666666666666666667777777776666665421 1223456666667777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh-hcCCC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP-DNQTYNAIISPL-LGEKS 653 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~ 653 (658)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+ +.| +...+..+..++ ...|+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCc
Confidence 7777766542 22455666666667777777777777776665 333 445555565555 34443
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.2e-15 Score=165.50 Aligned_cols=352 Identities=14% Similarity=0.112 Sum_probs=234.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 006154 151 ALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKEC 230 (658)
Q Consensus 151 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 230 (658)
.+...+...|.+++|.++|++... ...+.+.++. ..+++++|.+++++. -+..+|..+..++.+.|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence 356777788888888888887521 2223333332 667788888887755 23567778888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 231 KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 231 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
++++|++.|.+. -|...|..++.++.+.|++++|.+.|... ... .++....+.++.+|++.+++++...
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA---rk~--~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA---RKK--ARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH---Hhh--cccccccHHHHHHHHhhcCHHHHHH
Confidence 888888888553 26667778888888888888888888763 322 1333334457788888888775443
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006154 311 IRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHI 390 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 390 (658)
.. + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 1 445666777888888888888888888774 377888888888888888888887762
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 391 CPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-....|+-+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 5677777777888888888777655532 2255667778888888888888888887776543 2234456556
Q ss_pred HHHHHhc--CChHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CC
Q 006154 471 IDGYCKG--GNIEGAVQVYENMKKVEKK------PNLVIYNSIINGLCKDASLDAAKSLLQASQRI------------GL 530 (658)
Q Consensus 471 i~~~~~~--g~~~~A~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~ 530 (658)
...|++. ++..++.+.|..-.. ++ -+...|..++..|.+.|+++.|...+-+.... ..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv 1398 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 1398 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc
Confidence 6666553 334444444443222 11 14566778888888888888777332221111 22
Q ss_pred CCHhhHHHHHHHHHHcC---------------CHHHHHHHHH
Q 006154 531 LDAITYNTLINGYFING---------------KIAEAFAMFS 557 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 557 (658)
.++..|...+..|...+ +.+++.++|.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 36777777777776666 6666666655
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2.1e-18 Score=172.69 Aligned_cols=310 Identities=13% Similarity=-0.012 Sum_probs=210.9
Q ss_pred HhcCCHHHHHH-HHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 262 CQVGDLEFALK-LFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 262 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
...|++++|.. .+++...........+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 88764222222222245678888888899999999999999988875 56778888888889999999
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|.+.++++.+... .+..++..+...+...|++++|...++++...... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 999999988887643 26677888888888888888888888888875432 22221111000 00 0
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 006154 421 LEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL 499 (658)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 499 (658)
.. ....+..+...+ ..|++++|...++++....... +..++..+...+.+.|++++|+..++++.+.. +.+.
T Consensus 179 ----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 001111222223 6777788888887777653221 46777778888888888888888888877753 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------ChH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV----------NKV 569 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~ 569 (658)
..+..+...+...|++++|...++++.+..+.+..++..++.+|.+.|++++|...|+++.+..... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 7788888888888888888888888888877788888888888888888888888888887632111 157
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+|..+..++...|++++|..++++..
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 78888888999999888888876544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.8e-18 Score=170.80 Aligned_cols=264 Identities=11% Similarity=-0.014 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK 441 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 441 (658)
+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++.+..+. +..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 44444444444444444444444444321 23344444444444555555555555544444322 34444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIIT----------------YGTLIDGYCKGGNIEGAVQVYENMKKVEKKP-NLVIYNS 504 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 504 (658)
.|++++|...++++...... +... +..+. .+...|++++|...++++.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555554443211 1111 11223 3338899999999999998864332 5788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
+...+...|++++|...++++....+.+..+|..++..+...|++++|...++++.+.. +.+...+..++.+|.+.|++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999988899999999999999999999999999998853 44678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 585 QQARELMKVMILHGIIP----------DYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++|...++++.+..... ...+|..+..++...|++++|..++++.+
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999988642111 16789999999999999999998877543
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.5e-17 Score=160.59 Aligned_cols=282 Identities=11% Similarity=0.081 Sum_probs=125.2
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALS 237 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 237 (658)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678899999999882 3458999999999999999999999652 577788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 238 LYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
+++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING----------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC----------C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77776664 44677788899999999999998877643 56679999999999999999999999876
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 006154 318 AGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTY 397 (658)
Q Consensus 318 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 397 (658)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 47889999999999999999999887 278899999999999999999965554422 244445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS--NNLAAAKQLLSSMIVRGLIP------DIITYGT 469 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~~~~ 469 (658)
..++..|.+.|.+++|..+++..+... ......|+-+.-.|++- ++..+.++.|..- .+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568888999999999999999888765 33566777777777664 3344444444311 11222 3445677
Q ss_pred HHHHHHhcCChHHHHHH
Q 006154 470 LIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~ 486 (658)
+...|...++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 77777788888877763
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2.6e-17 Score=164.45 Aligned_cols=244 Identities=12% Similarity=-0.039 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.|+++.+... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4446666666666666666666666666553 44555566666666666666666666665555421 134445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAA 448 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 448 (658)
|...|++++|...++++.+.... +...+..+. .....+..+...+...|++++|
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555555442100 000000000 0112223334445555555555
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 449 KQLLSSMIVRGLI-PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 449 ~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
...++++...... ++...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544211 134445555555555555555555555555432 12344555555555555555555555555555
Q ss_pred cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 528 IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 528 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+.+..++..++.+|...|++++|...|+++.+
T Consensus 276 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5544555555555555555555555555555543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=4.8e-18 Score=165.54 Aligned_cols=281 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHH
Q 006154 229 ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFA 308 (658)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 308 (658)
.|++++|.++++++. +..+|..++.++.+.|++++|++.|.+ . +|..+|..++.++...|++++|
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik---a------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK---A------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc---C------CCHHHHHHHHHHHHhCCCHHHH
Confidence 344555555555441 112444555555555555555555533 1 2344455555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 309 EEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK 388 (658)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 388 (658)
+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5544444332 2334445555555555555555544442 134445555555555555555555555544
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 389 HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYG 468 (658)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 468 (658)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence 24555555555555555555555554 144555555555555555555533332211 1222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCC-----CCHhhHHHHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK--DASLDAAKSLLQASQRIGL-----LDAITYNTLIN 541 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~ 541 (658)
.++..|.+.|++++|+.+++...... +.....|+-+.-.|++ .++..+..+.|..-....+ .+...|..++.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555432 2233444444444433 2233333333332111111 14456666666
Q ss_pred HHHHcCCHHHHHH
Q 006154 542 GYFINGKIAEAFA 554 (658)
Q Consensus 542 ~~~~~g~~~~A~~ 554 (658)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.8e-17 Score=165.60 Aligned_cols=265 Identities=12% Similarity=0.006 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
.+..+...+.+.|++++|...|+++.+... .+..++..+...+...|++++|.+.++++.+..+. +..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 344455555555555555555555554322 24445555555555555555555555555554332 4555555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLI---------PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIINGLC 510 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 510 (658)
..|++++|...++++.+.... .....+..+...+...|++++|+..++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666655543110 01233445677888999999999999999986433 26888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..|++++|...++++.+..+.+..+|..++.+|...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998899999999999999999999999999998863 34588899999999999999999999
Q ss_pred HHHHHHcCCC-----------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 006154 591 MKVMILHGII-----------PDYVTYTTLVTRFSKNCSPEEVIELHDD 628 (658)
Q Consensus 591 ~~~~~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 628 (658)
++++.+.... .+..+|..+..++...|+.+.+....++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999864211 0256788999999999999988877665
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.1e-15 Score=158.68 Aligned_cols=384 Identities=11% Similarity=-0.027 Sum_probs=211.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK--------GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC-----G 211 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g 211 (658)
....|+.|..++...|++++|++.|++..+. .......+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456788888888888888888888776542 11223566777777888888888888887776642 0
Q ss_pred -C-CcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHhcccccCC
Q 006154 212 -Y-VENVNTFNLVIYALCKE--CKLEEALSLYYRMLKSGIWPNVVCFNMIINE---ACQVGDLEFALKLFRKMGVMSGDS 284 (658)
Q Consensus 212 -~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~ 284 (658)
. .....++..+..++.+. +++++|++.|++..+..+. +...+..+..+ +...++.++|++.+++. ...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a---l~l- 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQA---IRL- 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH---HHH-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---hhc-
Confidence 0 11234555554444443 4577888888777765322 33344444333 33456667777777763 221
Q ss_pred cCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHh
Q 006154 285 VLPNSVTHNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNV 360 (658)
Q Consensus 285 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 360 (658)
-+.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 11234445444444433 345667777777776654 556666777777777777777777777777665322 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 006154 361 VYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLC 440 (658)
Q Consensus 361 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (658)
++..+..+|...+.... ... ...........+..++|...+++..+..+. +..++..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHH
Confidence 55555544432211100 000 000000011122356777777777776543 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDII--TYGTLID-GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 517 (658)
..|++++|...|++.......+... .+..+.. .....|++++|+..|++..+. .|+..... +....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHH
Confidence 8888888888888877754332221 1222222 234567788888888877764 33332211 12234
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
+.++++......|.++.+|..++.+|...|++++|++.|++.++.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4555566666666666777777777777777777777777776643
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.2e-17 Score=158.09 Aligned_cols=280 Identities=10% Similarity=-0.053 Sum_probs=188.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006154 324 VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 324 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
...+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344555666666667777777777666655322 45556666666666666666666666666542 2245555566666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCChH
Q 006154 404 LCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTL-ID-GYCKGGNIE 481 (658)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~-~~~~~g~~~ 481 (658)
+...|++++|.+.++++.+..+. +...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666666655332 22222211000 0111111112 11 256678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+|...++++.+... .+...+..+...+...|++++|...++++.+..+.+..++..++..+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888887643 36778888888888889999999999988888887888899999999999999999999998887
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 562 VGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP-----------DYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 562 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.. +.+..++..++.++...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++..
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 3457788888899999999999999999888653221 46788888888999999999988887544
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.1e-16 Score=155.22 Aligned_cols=281 Identities=11% Similarity=-0.024 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 006154 288 NSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIH 367 (658)
Q Consensus 288 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 367 (658)
+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44556677778888888888888888887764 55677778888888888888888888888877632 25667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCCH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILIN--YLCKSNNL 445 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 445 (658)
.+...|++++|...++++.+.... +...+..+.... |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888875332 222222221000 01111111211 24455566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666655432 245566666666666777777777776666542 234566677777777777777777777777
Q ss_pred HHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 526 QRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-----------NKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 526 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
.+..+.+..++..++..|...|++++|...++++.+..... +...+..+..++.+.|++++|..++++.
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77766677777777777778888888888877776642111 3566777778888888888887777654
Q ss_pred H
Q 006154 595 I 595 (658)
Q Consensus 595 ~ 595 (658)
.
T Consensus 313 l 313 (327)
T 3cv0_A 313 V 313 (327)
T ss_dssp S
T ss_pred H
Confidence 3
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.1e-16 Score=150.10 Aligned_cols=249 Identities=9% Similarity=0.005 Sum_probs=138.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 006154 334 YARGGSSEEALRLCDEMVKRGLMPNN--VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVK 411 (658)
Q Consensus 334 ~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (658)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34455666665555544332 2222 2334445556666666665554432 12344555555556666666666
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 412 QAFKLHNQVLEEHMVG-DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 412 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665554322 344445555666666666666666654 235556666666666666666666666666
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006154 491 KKVEKKPNLVIY---NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN 567 (658)
Q Consensus 491 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 567 (658)
.+.. |+.... ...+..+...|++++|..+|+++.+..|.++..++.++.++.+.|++++|...|+++.+.. +.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 6542 332211 1122333334666666666666666666666666666666666677777766666666542 334
Q ss_pred hHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 006154 568 KVGYNILINFLCKFGCYQQ-ARELMKVMILH 597 (658)
Q Consensus 568 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 597 (658)
..++..++..+...|+.++ +.++++++.+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5566666666666666654 45666666653
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.7e-15 Score=155.60 Aligned_cols=375 Identities=13% Similarity=0.006 Sum_probs=240.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhccccc----CCcCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 006154 249 PNVVCFNMIINEACQVGDLEFALKLFRKMGVMSG----DSVLP-NSVTHNCIINGFCKLGRVEFAEEIRYAMIKA----- 318 (658)
Q Consensus 249 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 318 (658)
.....||.|...+...|++++|++.|++...+.. ....| ...+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999998533311 11122 3568899999999999999999999887653
Q ss_pred C--CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCcHhHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCC
Q 006154 319 G--IDCNVRTYATLIDGYAR--GGSSEEALRLCDEMVKRGLMPNNVVYNSTIHW---LFAEGDVEGALFVLSDMIDKHIC 391 (658)
Q Consensus 319 ~--~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 391 (658)
+ ......++..+..++.. .+++++|++.|++..+.... +...+..+..+ +...++.++|++.+++.++....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 01234566666655554 45789999999999886422 34445444444 44567888899999988875432
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006154 392 PDHFTYSILTKGLCR----NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY 467 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 467 (658)
+...+..+...+.. .|+.++|.+.+++..+..+. +..++..+...|...|++++|...+++..+... .+...+
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 55556555555544 46778999999998887654 677888899999999999999999999888643 356677
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 468 GTLIDGYCKG-------------------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 468 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
..+...|... +.++.|...+++..+... .+...+..+...+...|++++|...|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7776666432 234566667776666532 24556677777888888888888888888777
Q ss_pred CCCCH---hhHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006154 529 GLLDA---ITYNTLIN-GYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV 604 (658)
Q Consensus 529 ~~~~~---~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 604 (658)
.+.+. ..+..+.. .+...|++++|+..|++..+. .|+...... ....+.+++++.+... +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 65522 22333333 234667888888888888773 455432221 2234445555555542 44677
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHH
Q 006154 605 TYTTLVTRFSKNCSPEEVIELHDDMVLSG-VSPDNQT 640 (658)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 640 (658)
+|..+...|...|++++|++.|++.++.| ..|+..+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 89999999999999999999999998863 3344443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=4.4e-16 Score=149.06 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=120.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICP-DHFTYSILTKGLCRNG 408 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 408 (658)
+.++|...|++++|+..++. .-.|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444443322 112333444444444444455555555555544443222 2333333444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChHHHHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITY---GTLIDGYCKGGNIEGAVQ 485 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~ 485 (658)
++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555544 2244455555555555555555555555555542 222111 112233334467777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE-AFAMFSEMRNV 562 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 562 (658)
+|+++.+. .+.+...++.+..++...|++++|...++++.+..|.++.++..++..+...|+.++ +.++++++.+.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777765 334666777777777777777777777777777777777777777777777777654 45677777663
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=180.07 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 006154 252 VCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLI 331 (658)
Q Consensus 252 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 331 (658)
.|||++|++||+.|++++|.++|++|..+...|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||+.||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35555555555555555555555543333334455555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 006154 332 DGYARGGSS-EEALRLCDEMVKRGLMPNNVVYNSTIHW 368 (658)
Q Consensus 332 ~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 368 (658)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 555555542 4555555555555555555555555443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=175.42 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRI---GLL-DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNI 573 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 573 (658)
-..+|+++|++||+.|++++|.++|+.|.+. |.. |..+||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456777777777777777777777665432 333 677777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006154 574 LINFLCKFGC-YQQARELMKVMILHGIIPDYVTYTTLVTRFSK 615 (658)
Q Consensus 574 l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 615 (658)
+|+++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777665 35666777777777777777777766655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-14 Score=136.48 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHHH
Q 006154 397 YSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI--PD----IITYGTL 470 (658)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~----~~~~~~l 470 (658)
+..+...+...|++++|.+.++++.+.. .+...+..+...+...|++++|...+++..+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3444444444555555555555444444 34444455555555555555555555544432110 11 3455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIA 550 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 550 (658)
...+...|++++|...++++.+.. |+. ..+...|++++|...++.+....+.+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 556666666666666666665532 222 23444566666777777666665556666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 551 EAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+|...++++.+.. +.+..++..++.++...|++++|++.++++.+.. +.+...|..+...+.+.|++++|.+.+++..
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777777776643 3346666677777777777777777777776642 2345666667777777777777777777766
Q ss_pred HC
Q 006154 631 LS 632 (658)
Q Consensus 631 ~~ 632 (658)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=9.5e-15 Score=149.41 Aligned_cols=378 Identities=11% Similarity=0.015 Sum_probs=202.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHhcccccCCcCCChhhHHHHHHH
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDL---EFALKLFRKMGVMSGDSVLPNSVTHNCIING 298 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 298 (658)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+..|++ .... +...+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~---A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRA---AADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHH---HHhC----CHHHHHHHHHH
Confidence 3444555666666666666665543 333344444455555555 666666666 2221 33445555554
Q ss_pred HHhcC-----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCcHhHHHHHHHHHH
Q 006154 299 FCKLG-----RVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSE---EALRLCDEMVKRGLMPNNVVYNSTIHWLF 370 (658)
Q Consensus 299 ~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 370 (658)
+...+ ++++|...|++..+.| . ...+..|...|...+..+ ++.+.+......| +...+..+...|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44443 5566777776666655 2 225555566655544332 3444444444433 3445555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----C
Q 006154 371 AEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG---CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS----N 443 (658)
Q Consensus 371 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 443 (658)
..+.++++......+.+.-...++..+..+...|...| +.++|++.|++..+.+.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 66644444333222222111223336666667777777 777777777777776643 444445556666544 5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 006154 444 NLAAAKQLLSSMIVRGLIPDIITYGTLIDG-Y--CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-----SL 515 (658)
Q Consensus 444 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 515 (658)
++++|...|++.. .| +...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 7777777777776 32 34444555554 3 34677788888887777654 5556666666665 44 77
Q ss_pred HHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHH
Q 006154 516 DAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQA 587 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 587 (658)
++|...|++.. +.++.++..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 88888887777 3377777777777765 347888888888887765 33445556666653 3478888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...++...+.|.. +.......+......++..+|..+.++..+
T Consensus 378 ~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 378 YVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888888776632 222222222222233455566666665544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-14 Score=134.64 Aligned_cols=225 Identities=13% Similarity=-0.011 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----hhhHH
Q 006154 360 VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG--D----AYSYN 433 (658)
Q Consensus 360 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~ 433 (658)
..+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.++++.+..+.. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666655554 455556666666666666666666666655542211 1 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA 513 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 513 (658)
.+...+...|++++|...++++.... |+. ..+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777776642 332 33555677888888888877752 224567777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 593 (658)
++++|...++++.+..+.+..++..++..+...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888888888788888888888888889999988888888753 34577788888888888999999888888
Q ss_pred HHHc
Q 006154 594 MILH 597 (658)
Q Consensus 594 ~~~~ 597 (658)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=2.2e-14 Score=146.76 Aligned_cols=379 Identities=13% Similarity=0.014 Sum_probs=167.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEI---GRFWKLYKEMVSCGYVENVNTFNLVIYALCK 228 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 228 (658)
+...+.+.|++++|.+.|++..+.| ++.++..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667777888888888888887765 344555566666667777 7888888877753 44455555554444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHhcccccCCcCCChhhHHHHHHHHH
Q 006154 229 EC-----KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEF---ALKLFRKMGVMSGDSVLPNSVTHNCIINGFC 300 (658)
Q Consensus 229 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 300 (658)
.| ++++|..+|++..+.|. ..++..|...|...+..+. +.+.+.. .... .+...+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~---a~~~---g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQ---WQAA---GYPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHH---HHHH---TCTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH---HHHC---CCHHHHHHHHHHHH
Confidence 44 66778888888777542 2355566666655443332 2222222 1111 12334444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhc----C
Q 006154 301 KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGG---SSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAE----G 373 (658)
Q Consensus 301 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~----g 373 (658)
..+.++++......+.+.-...+...+..|...|...| +.++|++.|++..+.|.. +...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 55543333333222221111222234555555555555 555555555555554422 333333333333322 3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHH
Q 006154 374 DVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYL--CKSNNLAAAKQL 451 (658)
Q Consensus 374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~ 451 (658)
+.++|..+|++.. +-+...+..+...| + ...+++++|...
T Consensus 232 d~~~A~~~~~~aa----~g~~~a~~~Lg~~~----------------------------------~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 232 DEKTAQALLEKIA----PGYPASWVSLAQLL----------------------------------YDFPELGDVEQMMKY 273 (452)
T ss_dssp CHHHHHHHHHHHG----GGSTHHHHHHHHHH----------------------------------HHSGGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHc----CCCHHHHHHHHHHH----------------------------------HhCCCCCCHHHHHHH
Confidence 4455555554444 11233333333331 2 234455555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006154 452 LSSMIVRGLIPDIITYGTLIDGYCKGG-----NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLL 522 (658)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 522 (658)
|++..+.| +...+..+...|. .| ++++|+..|++.. .-+...+..+...|.. ..++++|...+
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 55544443 3333444444443 22 5555555555544 1233444444444433 22555566665
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 523 QASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++..+.+ ++.....|...|.. ..+.++|...|+...+.|. ++.......+......++..+|..+.++...
T Consensus 346 ~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 346 LTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555543 33444445554443 3456666666666666552 2222111122222223345556666655543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.3e-14 Score=130.90 Aligned_cols=198 Identities=14% Similarity=-0.019 Sum_probs=126.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...+..+...+.+.|++++|...|++.++... .+...+..+...+.+.|++++|+..+++..+..+ .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 444555555555566666666666665555422 2455555555666666666666666666655422 24455555566
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 508 GLCKD-----------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 508 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
.+... |++++|...++++.+..|.+...+..+..++...|++++|+..|+++.+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 888888888888888888788888888888888888888888888887765 57777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
++...|++++|+..++++.+.. +.+...+..+...+.+.|++++|.+.+++.-
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888752 3356677777788888888888888777653
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=4.4e-14 Score=129.01 Aligned_cols=114 Identities=15% Similarity=0.078 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
|++++|+..+++..+..+. +...+..+...+...|++++|...++++.+.. .++..+..+..+|...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555443221 34444455555555555555555555555544 455555555555555555555555555
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
++.+.. +.+...+..+...+...|++++|+..+++.
T Consensus 176 ~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555432 223444555555555555555555555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.3e-13 Score=131.18 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=127.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIP--DIITYGTLIDGYC 475 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~ 475 (658)
......+...|++++|.+.++++.+..+. +...+..+...+...|++++|...+++....+..| ....|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555554332 33455555555555555555555555555522111 1223555555566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
..|++++|+..+++..+... .+..++..+...+...|++++|...++++.+..+.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655422 24455666666666666666666666666666555666666666333334466666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhCCChHHHHHH
Q 006154 556 FSEMRNVGIAVNKVGYNILINFLCKFGC---YQQARELMKVMILHG-IIPD------YVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 556 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
++++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666542 2234555556666666665 566666666655431 1122 13555566666667777777777
Q ss_pred HHHHHH
Q 006154 626 HDDMVL 631 (658)
Q Consensus 626 ~~~m~~ 631 (658)
++++.+
T Consensus 244 ~~~al~ 249 (272)
T 3u4t_A 244 WKNILA 249 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777666
No 44
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.2e-11 Score=130.43 Aligned_cols=434 Identities=12% Similarity=0.082 Sum_probs=253.1
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC---HhHHHHHHHHH
Q 006154 131 FLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNE---IGRFWKLYKEM 207 (658)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~ 207 (658)
.++.-+. ..|.+...|..++..+.+.+.++.+..+|+++... ++.+...|...+..-.+.|+ ++.+..+|++.
T Consensus 54 ~lE~~l~---~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 54 KLNDMIE---EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHH---HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 3444444 45678888888888888888888888888888876 45567778888887777777 88888888888
Q ss_pred HhCC-CCcCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHHh---------cCC
Q 006154 208 VSCG-YVENVNTFNLVIYALCKECKL--------EEALSLYYRMLK-SGI-WPN-VVCFNMIINEACQ---------VGD 266 (658)
Q Consensus 208 ~~~g-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~ 266 (658)
+... .+|++..|...+....+.++. +.+.++|+..+. .|. .|+ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8753 136777777777665555543 334466766554 355 444 3466666665542 234
Q ss_pred HHHHHHHHHHhcccccCCcCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 006154 267 LEFALKLFRKMGVMSGDSVLPN--SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEAL 344 (658)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 344 (658)
++.+..+|++ ... ++.. ..+|......--..+. ..+.+++.+ ...+++.|.
T Consensus 210 ~~~~R~iy~r---aL~--iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar 262 (679)
T 4e6h_A 210 VQYIRKLYKT---LLC--QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHH---HTT--SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHH
T ss_pred HHHHHHHHHH---HHh--CccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHH
Confidence 5667777777 332 2111 1222211111000000 011111111 011233344
Q ss_pred HHHHHHHHC--CCC---------------C--c------HhHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCC
Q 006154 345 RLCDEMVKR--GLM---------------P--N------NVVYNSTIHWLFAEG-------DVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 345 ~~~~~~~~~--g~~---------------p--~------~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~ 392 (658)
..+.++... ++. | + ...|...+..--..+ ..+.+..+|++++.. .+-
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 444333210 110 1 0 123444433222221 123345567766654 333
Q ss_pred ChhhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC
Q 006154 393 DHFTYSILTKGLCRNGCVKQAF-KLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG---------LIP 462 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~p 462 (658)
+...|...+..+...|+.++|. +++++.....+ .+...|...+....+.|++++|.++|+++.... -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 6666666677677777777775 88887776432 355566667777777888888888887776531 012
Q ss_pred C------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 006154 463 D------------IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD-ASLDAAKSLLQASQRIG 529 (658)
Q Consensus 463 ~------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 529 (658)
+ ...|...+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++.+.|.++|+...+..
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 1 2346666666666777888888888777651112233333333222233 44788888888877776
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.++..|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6677777777777777788888888888877753211 2456677777777778888888888887765
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=2.4e-11 Score=128.31 Aligned_cols=457 Identities=12% Similarity=0.084 Sum_probs=304.6
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---HHHHH
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK---LEEAL 236 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~ 236 (658)
....+.+..|++.+..++ -|..+|..++..+.+.+.++.+..+|+.++.. ++.....|...+..-.+.|+ ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 345566666777766654 48999999999999999999999999999976 56677888888888888888 99999
Q ss_pred HHHHHHHhCCC-CCChhhHHHHHHHHHhcCCH----H----HHHHHHHHhcccccCCc-CCC-hhhHHHHHHHHHh----
Q 006154 237 SLYYRMLKSGI-WPNVVCFNMIINEACQVGDL----E----FALKLFRKMGVMSGDSV-LPN-SVTHNCIINGFCK---- 301 (658)
Q Consensus 237 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~----~----~A~~~~~~~~~~~~~~~-~~~-~~~~~~li~~~~~---- 301 (658)
.+|++.+.... .|++..|...+....+.++. + ...++|+.. +..-|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA--l~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV--VDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH--HHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH--HHHhCcccccchHHHHHHHHHHHhcccc
Confidence 99999887631 37888888888777666664 2 344677774 333444 443 4567666655432
Q ss_pred -----cCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCC
Q 006154 302 -----LGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGD 374 (658)
Q Consensus 302 -----~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~ 374 (658)
.++++.+..+|+++... |.. ..+|......-... +...+.+++.+. ..+
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~---------------------~~~ 257 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDV-NQLTARRHIGEL---------------------SAQ 257 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH---------------------HHH
T ss_pred CcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh---------------------hHH
Confidence 33466677777777742 221 12222111110000 011122222111 112
Q ss_pred HHHHHHHHHHHHh--CCC----C-----------C--C------hhhHHHHHHHHHhcC-------ChHHHHHHHHHHHH
Q 006154 375 VEGALFVLSDMID--KHI----C-----------P--D------HFTYSILTKGLCRNG-------CVKQAFKLHNQVLE 422 (658)
Q Consensus 375 ~~~a~~~~~~~~~--~~~----~-----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~ 422 (658)
++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|++.+.
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 3333333333221 011 1 1 0 123333443222222 12345677888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------
Q 006154 423 EHMVGDAYSYNILINYLCKSNNLAAAK-QLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK------ 495 (658)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------ 495 (658)
..+. +...|...+..+...|+.++|. ++|++.... ++.+...|...+....+.|+++.|..+|+.+.+...
T Consensus 338 ~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 HVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 7544 7888988999899999999997 999999874 445666777788888899999999999999886410
Q ss_pred ---CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHhhHHHHHHHHHHc-CCHHHHHHHHHH
Q 006154 496 ---KPN------------LVIYNSIINGLCKDASLDAAKSLLQASQRI-GLLDAITYNTLINGYFIN-GKIAEAFAMFSE 558 (658)
Q Consensus 496 ---~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 558 (658)
.|+ ..+|...+....+.|+.+.|..+|..+.+. .......|...+..-.+. ++.+.|..+|+.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 132 346777788888889999999999999887 333555565544444454 458999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006154 559 MRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSP 636 (658)
Q Consensus 559 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 636 (658)
.++. ++.+...+...++.....|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+..+.++|.+. .|
T Consensus 496 ~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P 572 (679)
T 4e6h_A 496 GLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FP 572 (679)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--ST
T ss_pred HHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9886 44566667788888889999999999999999763322 3467888888888999999999999999985 55
Q ss_pred CHHHHHHHHHHhh
Q 006154 637 DNQTYNAIISPLL 649 (658)
Q Consensus 637 ~~~~~~~l~~~~~ 649 (658)
+......+++-|.
T Consensus 573 ~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 573 EVNKLEEFTNKYK 585 (679)
T ss_dssp TCCHHHHHHHHTC
T ss_pred CCcHHHHHHHHhc
Confidence 5555555555443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=2.8e-13 Score=128.83 Aligned_cols=244 Identities=10% Similarity=-0.020 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc--HhHHHHHHHHH
Q 006154 292 HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN--NVVYNSTIHWL 369 (658)
Q Consensus 292 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~ll~~~ 369 (658)
+......+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+.+..|+ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555555555555555555543 33344555555555555555555555555554321111 11244555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAK 449 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 449 (658)
...|++++|+..+++..+.... +..++..+...+...|++++|.+.+++..+..+. +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543222 3344555555555555555555555555444222 3334444441222233555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006154 450 QLLSSMIVRGLIPDIITYGTLIDGYCKGGN---IEGAVQVYENMKKVE-KKPN------LVIYNSIINGLCKDASLDAAK 519 (658)
Q Consensus 450 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 519 (658)
+.++++.+... .+...+..+...+...|+ +++|...++++.+.. ..|+ ...+..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555544321 123444444444444444 444555554444321 0111 123334444444444444444
Q ss_pred HHHHHHHHcCCCCHhhHHHH
Q 006154 520 SLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~l 539 (658)
..++++.+..|.+..++..+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHh
Confidence 44444444444444444333
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.8e-13 Score=135.34 Aligned_cols=228 Identities=13% Similarity=0.054 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN-LAAAKQLLSSMIVRGLIPDIITYGTLIDGY 474 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 474 (658)
.|..+...+.+.|++++|++.++++++..+. +..+|+.+...+...|+ +++|+..+++++..... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3444444455555555555555555555433 44555555555555554 55555555555554322 445555555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH-cCCHHHH-
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI-NGKIAEA- 552 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 552 (658)
...|++++|+..|+++++.... +...|..+..++...|++++|...++++.+..+.+..+|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5556666666666655554322 455555555555556666666666666666655555666666665555 3333444
Q ss_pred ----HHHHHHHHHCCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---------
Q 006154 553 ----FAMFSEMRNVGIAVNKVGYNILINFLCKFG--CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNC--------- 617 (658)
Q Consensus 553 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--------- 617 (658)
+..+++.++.. +-+...|+.+..++.+.| ++++|++.++++ +. -+.+...+..++..|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 35555555532 223445555555555555 455566655555 21 2223445555555555542
Q ss_pred ChHHHHHHHHHH
Q 006154 618 SPEEVIELHDDM 629 (658)
Q Consensus 618 ~~~~A~~~~~~m 629 (658)
..++|+++++++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 135566666665
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.6e-12 Score=121.18 Aligned_cols=222 Identities=13% Similarity=-0.004 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 395 FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK----SNNLAAAKQLLSSMIVRGLIPDIITYGTL 470 (658)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 470 (658)
.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 344444455555555555555555555521 33445555555555 555555655555555543 44555555
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 471 IDGYCK----GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 471 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 555555 666666666666665542 45555556666665 666666666666666554 45556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006154 543 YFI----NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILHGIIPDYVTYTTLVTRFS 614 (658)
Q Consensus 543 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 614 (658)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 666 667777777777666643 34556666666666 677777777777766653 2455556666666
Q ss_pred h----CCChHHHHHHHHHHHHCC
Q 006154 615 K----NCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 615 ~----~g~~~~A~~~~~~m~~~g 633 (658)
+ .+++++|.+++++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 6 677777777777776643
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=2.4e-12 Score=122.42 Aligned_cols=224 Identities=10% Similarity=-0.049 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCcCHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVK----LNEIGRFWKLYKEMVSCGYVENVNTF 219 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~ 219 (658)
.++.++..+...|...|++++|.+.|++..+.+ ++.++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456777778888888888888888888887733 55677777777777 788888888888887764 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhcccccCCcCCChhh
Q 006154 220 NLVIYALCK----ECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQ----VGDLEFALKLFRKMGVMSGDSVLPNSVT 291 (658)
Q Consensus 220 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 291 (658)
..+...+.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++. ...+ +...
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~---~~~a 148 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA---CDLN---DGDG 148 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH---HHTT---CHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH---HhcC---cHHH
Confidence 777777777 777888888887777653 55666677777776 77777777777763 3322 3445
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 292 HNCIINGFCK----LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYAR----GGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 292 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 222 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF 222 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHH
Confidence 5556666665 666666666666666543 34555555666666 666666666666665553 244445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhC
Q 006154 364 STIHWLFA----EGDVEGALFVLSDMIDK 388 (658)
Q Consensus 364 ~ll~~~~~----~g~~~~a~~~~~~~~~~ 388 (658)
.+...|.+ .+++++|...+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555555 55555555555555543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=9.9e-13 Score=123.43 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYC 475 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 475 (658)
.+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 3444444455555555555555555444322 344445555555555555555555555544321 23444445555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA 554 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 554 (658)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++|..
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554421122 233444444555555555555555555555444445555555555555555555555
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555554432 23344444455555555555555555555544
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=5.2e-13 Score=125.38 Aligned_cols=211 Identities=13% Similarity=-0.008 Sum_probs=182.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5667888899999999999999999998864 34678888999999999999999999999988643 367888999999
Q ss_pred HHhcCCHHHHHHHHHHHHH--cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH
Q 006154 509 LCKDASLDAAKSLLQASQR--IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 586 (658)
+...|++++|...++++.. ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998 555578899999999999999999999999998864 3457888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 587 ARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645 (658)
Q Consensus 587 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 645 (658)
|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .|+...+..++
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 999999998753 456778888889999999999999999999984 56655544443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=4.8e-13 Score=132.28 Aligned_cols=248 Identities=10% Similarity=0.006 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 006154 289 SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGS-SEEALRLCDEMVKRGLMPNNVVYNSTIH 367 (658)
Q Consensus 289 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 367 (658)
...|..+...+.+.|++++|++.++++.+.. +.+...|+.+...+...|+ +++|+..|+++.+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3445566666666677777777777766654 4456666666666666665 77777777766665332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHH
Q 006154 368 WLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCK-SNNLA 446 (658)
Q Consensus 368 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 446 (658)
++...|++++|+..|+++++.... +...|..+..++...|++++|++.++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 666666666666666666665333 5556666666666666666666666666666544 55566666666666 44434
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------
Q 006154 447 AA-----KQLLSSMIVRGLIPDIITYGTLIDGYCKGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA------ 513 (658)
Q Consensus 447 ~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 513 (658)
+| +..+++.+.... -+...|..+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 44 355555554322 13445555555555555 455566555555 22 2224445555555555542
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCHhhHHHHHHHH
Q 006154 514 ---SLDAAKSLLQAS-QRIGLLDAITYNTLINGY 543 (658)
Q Consensus 514 ---~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 543 (658)
.+++|.++++++ .+..+.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 135555566555 455444555555544433
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=8.4e-13 Score=121.39 Aligned_cols=198 Identities=9% Similarity=-0.077 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC 510 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (658)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444432 1234444444445555555555555555544432 123444455555555
Q ss_pred hc-CCHHHHHHHHHHHHH--cCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 511 KD-ASLDAAKSLLQASQR--IGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 511 ~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.. |++++|...++++.+ ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555554 222234555555555556666666666665555532 22345555555566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.+.++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666655532113444455555555556666666666666554
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=8.9e-14 Score=132.54 Aligned_cols=221 Identities=13% Similarity=0.002 Sum_probs=99.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 006154 336 RGGSSEEALRLCDEMVKRGLMP---NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQ 412 (658)
Q Consensus 336 ~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (658)
..|++++|+..++++.+..... +...+..+...+...|++++|...++++.+.... +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 3455555555555555542111 2334444555555555555555555555543221 34444445555555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKK 492 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 492 (658)
|.+.++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------------------- 141 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--------------------------------- 141 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------------------
Confidence 55555555444322 33444444444444444444444444444421
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CChH
Q 006154 493 VEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA---VNKV 569 (658)
Q Consensus 493 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~ 569 (658)
|+.......+..+...|++++|...++......+.+...+. ++..+...++.++|...++++.+.... .+..
T Consensus 142 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 216 (275)
T 1xnf_A 142 ----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216 (275)
T ss_dssp ----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence 22222222222233344455555555444444333322222 333444444455555555544432100 0134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+..++..+.+.|++++|...++++.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555555554
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2e-12 Score=118.85 Aligned_cols=202 Identities=10% Similarity=-0.000 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 444555556666666666666666666655432 45566666666667777777777776666543 2255666667777
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH
Q 006154 474 YCKG-GNIEGAVQVYENMKKVEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE 551 (658)
Q Consensus 474 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 551 (658)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 7777 77777777777777622222 245666777777777888888888887777777777778888888888888888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|...++++.+.....+...+..+...+...|+.++|..+++.+...
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888776532145666777777777888888888888877654
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=3.2e-13 Score=125.98 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+..++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 33445555566666666666666666666542 22455666666666667777777777766665432 25566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.+...|++++|...++++.+..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777666666777777777777777777777777776642 33566667777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 588 RELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 588 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
++.++++.... +.+..++..+...+.+.|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 77777776652 33466677777777777777777777777776
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1.5e-13 Score=131.03 Aligned_cols=247 Identities=9% Similarity=-0.055 Sum_probs=159.9
Q ss_pred hcCChhHHHHHHHHHHhCCC---ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006154 158 QIGATEGAYDVIQKLKVKGH---SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEE 234 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 234 (658)
..|++++|.+.|+++.+... +.+..++..+...+...|++++|...|+++++.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778888888888887632 2246677788888888888888888888888764 3457778888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006154 235 ALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 235 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 314 (658)
|.+.|+++.+.... +..++..+...+...|++++|...++++ .. ..|+.......+..+...|++++|...+.+
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a---~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAF---YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH---HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHH---HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888888775322 5667778888888888888888888874 32 234443444444555666788888888877
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006154 315 MIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP---NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC 391 (658)
Q Consensus 315 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 391 (658)
..... +++...+ .++..+...++.++|.+.+.+........ +...+..+...+.+.|++++|...++++.+..
T Consensus 170 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 245 (275)
T 1xnf_A 170 HFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-- 245 (275)
T ss_dssp HHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence 66653 3343333 35666667777777777777765542110 13456666666666777777777776666542
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLH 417 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (658)
|+. +.....++...|++++|++.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 122233444555555555443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=4.9e-13 Score=124.69 Aligned_cols=200 Identities=16% Similarity=0.056 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 394 HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 334445555555666666666666666654332 455566666666666666666666666665422 245666666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..+.+...+..++..+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777666532 355666677777777777777777777777776667777777777777778888888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
..++++.+.. +.+..++..++.++...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777776643 345667777777777888888888888877764
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3e-13 Score=136.99 Aligned_cols=273 Identities=16% Similarity=0.082 Sum_probs=139.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 006154 322 CNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPN----NVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HICP- 392 (658)
Q Consensus 322 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~- 392 (658)
.....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666677777788888888888777765322 2 245666777777777777777777766532 1111
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------HHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-GD----AYSYNILINYLCKSNN--------------------LAA 447 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 447 (658)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 1334555666666677777777777766665321 11 2245555555555666 555
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 006154 448 AKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDA 517 (658)
Q Consensus 448 A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 517 (658)
|...+.+.... +..| ....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 55555544331 1000 1223444445555555555555555554432100 11 1134444445555555555
Q ss_pred HHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHH
Q 006154 518 AKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVN----KVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 518 a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~ 586 (658)
|...+++.....+. ...++..++..|...|++++|...+++..+... .++ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555544432211 133444455555555555555555554433100 001 2234444455555555555
Q ss_pred HHHHHHHHH
Q 006154 587 ARELMKVMI 595 (658)
Q Consensus 587 A~~~~~~~~ 595 (658)
|.+.+++..
T Consensus 326 A~~~~~~al 334 (406)
T 3sf4_A 326 AMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3e-13 Score=137.30 Aligned_cols=275 Identities=13% Similarity=0.056 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChh
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHWLFAEGDVEGALFVLSDMIDK----H-ICPDHF 395 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~ 395 (658)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445566677777777777777777765322 22 35666667777777777777777766542 1 111234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEEH-----MVGDAYSYNILINYLCKSNN-----------------LAAAKQLLS 453 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~ 453 (658)
++..+...+...|++++|.+.+++..+.. ......++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555666666666666666666654431 01112244444455555555 444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL- 531 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 531 (658)
+..+.. .+.+. .....++..+...+...|++++|...+++..+..+.
T Consensus 208 ~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 432210 00000 001224444555555555555555555554443221
Q ss_pred -----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006154 532 -----DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI--A---VNKVGYNILINFLCKFGCYQQARELMKVMILH---- 597 (658)
Q Consensus 532 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 597 (658)
...++..++..|...|++++|...+++..+... . ....++..+...+...|++++|.+.+++....
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 122555566666666666666666665543210 0 01344555666666666666666666665532
Q ss_pred CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 598 GII-PDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 598 g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+.. ....++..+...|.+.|++++|.+.+++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 100 0123455556666666666666666666655
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=9.3e-13 Score=133.69 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=144.0
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCH----HHHHHHHHHHHhcCChhHHHHHHH
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATP----AVFDALVRACTQIGATEGAYDVIQ 170 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 170 (658)
..+..++..+...|++++|...++++++. .+.++ .++..+..+|...|++++|.+.++
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA------------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh------------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34556778888889999999998888762 23333 467788888888999999999888
Q ss_pred HHHhC----C-CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCC-----CCcCHHHHHHHHHHHHhcCC---------
Q 006154 171 KLKVK----G-HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCG-----YVENVNTFNLVIYALCKECK--------- 231 (658)
Q Consensus 171 ~~~~~----g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~~~~~~g~--------- 231 (658)
+..+. + ......++..+...|...|++++|...+++..+.. .+....++..+...+...|+
T Consensus 111 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 111 HDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchh
Confidence 87653 1 12245667778888888888888888888876531 11224467777777778888
Q ss_pred --------HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcC--CChhhHHHHH
Q 006154 232 --------LEEALSLYYRMLKS----GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVL--PNSVTHNCII 296 (658)
Q Consensus 232 --------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~li 296 (658)
+++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++...+...... ....++..+.
T Consensus 191 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270 (411)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 77777777665432 1111 1235566666666777777777776663211110000 0012455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC---C--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 297 NGFCKLGRVEFAEEIRYAMIKAGI---D--CNVRTYATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 297 ~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
..+...|++++|...+++..+... . ....++..+...|...|++++|...+++..
T Consensus 271 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555566666666665555543210 0 012344444555555555555555555443
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=9.6e-13 Score=133.23 Aligned_cols=300 Identities=15% Similarity=0.072 Sum_probs=219.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 006154 286 LPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN----VRTYATLIDGYARGGSSEEALRLCDEMVKR----GLMP 357 (658)
Q Consensus 286 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p 357 (658)
......+......+...|++++|...++++.+.+ +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455667778888999999999999999998874 333 356788889999999999999999987543 2122
Q ss_pred -cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 006154 358 -NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHIC-PD----HFTYSILTKGLCRNGC--------------------VK 411 (658)
Q Consensus 358 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~ 411 (658)
...++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2446778888899999999999999999875322 12 3367778888888999 99
Q ss_pred HHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChH
Q 006154 412 QAFKLHNQVLEE----HM-VGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPD----IITYGTLIDGYCKGGNIE 481 (658)
Q Consensus 412 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~ 481 (658)
+|.+.+++..+. +. .....++..+...+...|++++|...+++..+... .++ ...+..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877653 11 11234678888899999999999999988775411 122 236777888899999999
Q ss_pred HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHH
Q 006154 482 GAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIA 550 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~ 550 (658)
+|...+++..+.... ++ ..++..+...+...|++++|...++++...... ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999888753111 11 456778888899999999999999988765332 2668888999999999999
Q ss_pred HHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHH
Q 006154 551 EAFAMFSEMRNV----GIAV-NKVGYNILINFLCKFGCYQQ 586 (658)
Q Consensus 551 ~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 586 (658)
+|...+++..+. +..+ ...++..+...+...|+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999987652 1111 13344555555555555543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=8.3e-13 Score=129.76 Aligned_cols=274 Identities=13% Similarity=0.073 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPN----NVVYNSTIHWLFAEGDVEGALFVLSDMIDK----HIC-PDHFTY 397 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~ 397 (658)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455556666666666666666554221 1 234555555666666666666666554432 101 112234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEHMV-GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
..+...+...|++++|.+.+++..+.... ++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 44444444555555555544444332100 0000 002234444455555
Q ss_pred cCC--------------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 477 GGN--------------------IEGAVQVYENMKKV----EK-KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 477 ~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
.|+ +++|...+++..+. +. ......+..+...+...|++++|...++++.+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555544321 11 111235666667777778888887777776544222
Q ss_pred ------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006154 532 ------DAITYNTLINGYFINGKIAEAFAMFSEMRNVGI-AVN----KVGYNILINFLCKFGCYQQARELMKVMILH--- 597 (658)
Q Consensus 532 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 597 (658)
...++..++..+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.+.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 234778888888888999999888888764210 011 456778888899999999999999887753
Q ss_pred -CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 598 -GII-PDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 598 -g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
+-. ....++..+...+.+.|++++|...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 11346777888889999999999999998874
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=8.5e-12 Score=110.61 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING 542 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 542 (658)
+...|..+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++|...++.+....+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3444555555555555555555555555554322 444555555555555556666555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
+...++++.|...+.+..... +.+...+..+..++.+.|++++|++.+++.++.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 556666666666655555532 2334455555556666666666666666655542 22344555555566666666666
Q ss_pred HHHHHHHHH
Q 006154 623 IELHDDMVL 631 (658)
Q Consensus 623 ~~~~~~m~~ 631 (658)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666555
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=3.3e-11 Score=116.61 Aligned_cols=218 Identities=8% Similarity=0.031 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCh-------HHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCR-------NGCV-------KQAFKLHNQVLEE-HMVGDAYSYNILINYLC 440 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 440 (658)
++|...|++++... +.+...|..++..+.. .|++ ++|...|++.++. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 45555666665532 2244455555544432 3553 5566666655552 221 4445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDII-TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC-KDASLDAA 518 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 518 (658)
+.|++++|..+|+++++.... +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666655553211 122 455555555555566666666655555422 22333332222211 24555555
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG-IAV--NKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
..+|+.+.+..+.++..|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555531 233 23445555555555555555555555555
Q ss_pred Hc
Q 006154 596 LH 597 (658)
Q Consensus 596 ~~ 597 (658)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.1e-11 Score=109.78 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=113.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIIN 507 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 507 (658)
+...|..+...+.+.|++++|++.|++.++... -+...+..+...+.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 445566666666666666666666666665532 24566666666677777777777777766654322 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
.+...++++.|...+.++....+.+..++..++..|...|++++|++.|++..+.. +.+..+|..++.+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 66777777777777777777777677777777777777777777777777777643 33566677777777777777777
Q ss_pred HHHHHHHHHc
Q 006154 588 RELMKVMILH 597 (658)
Q Consensus 588 ~~~~~~~~~~ 597 (658)
++.|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777777763
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.1e-11 Score=124.44 Aligned_cols=233 Identities=7% Similarity=-0.077 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------ChhhHH
Q 006154 365 TIHWLFAEGDVEGALFVLSDMIDK----HICP-DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG------DAYSYN 433 (658)
Q Consensus 365 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~ 433 (658)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666666543 1111 12345555555666666666666655554421100 112334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PNLVIYNSIINGLCKD 512 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 512 (658)
.+...|...|++++|...+++..+... +.+.. ....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAE-------------------------------AEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHH-------------------------------HcCChHHHHHHHHHHHHHHHHC
Confidence 444444444444444444444332100 00000 0012444455555555
Q ss_pred CCHHHHHHHHHHHHH-----cC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHHHHHhcC
Q 006154 513 ASLDAAKSLLQASQR-----IG-LLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 513 g~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g 582 (658)
|++++|...+++..+ .. +....++..++..|...|++++|...+++..+. +-+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 555555555555554 22 224555666666666666666666666655431 11111222455566666666
Q ss_pred C---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 583 C---YQQARELMKVMILHGIIPD-YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 583 ~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+ +++|+.++++. +..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555544 22222 33455566666677777777777766654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=3.5e-12 Score=125.24 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=130.1
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKAT----PAVFDALVRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 171 (658)
.+...+..+...|++++|...++++++. .|.+ ..++..+...|...|++++|.+.+++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV------------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh------------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455667777788888888888877762 2223 35667777788888888888888877
Q ss_pred HHhC----CCc-cCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CcC----HHHHHHHHHHHHhcCC----------
Q 006154 172 LKVK----GHS-VSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY-VEN----VNTFNLVIYALCKECK---------- 231 (658)
Q Consensus 172 ~~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~l~~~~~~~g~---------- 231 (658)
..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 69 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 6542 111 1245666777777778888888877777664210 011 3356666677777777
Q ss_pred ----------HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC--cCCChhhHHH
Q 006154 232 ----------LEEALSLYYRMLKS----GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS--VLPNSVTHNC 294 (658)
Q Consensus 232 ----------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 294 (658)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++........ ......++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 67777666665431 1111 12345555566666666666666666531111100 0001224445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 295 IINGFCKLGRVEFAEEIRYAMIKAGI-DCN----VRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 295 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555555443210 000 233444444444555555555444444
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=9.3e-11 Score=113.43 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLC-------KSNNL-------AAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
++|...|+++++..+. +...|..++..+. +.|++ ++|..+|++.+..-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666777777665433 5666666666654 24664 7777777777763122245567777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH-HcCCHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF-INGKIAEAFA 554 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 554 (658)
.|++++|..+|+++.+..+. +.. +|..++..+.+.|++++|..+|+++.+..+.+...|...+.... ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777764221 233 67777777777777777777777777766665555554443322 2577777777
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG-IIP--DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+|++..+.. +.+...|..++..+.+.|++++|..+|++++... +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776642 3356667777777777777777777777777652 344 355667777777777777777777777776
Q ss_pred C
Q 006154 632 S 632 (658)
Q Consensus 632 ~ 632 (658)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=5.7e-12 Score=129.67 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNL-AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYE 488 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 488 (658)
++++.+.++....... .+...+..+...+...|++ ++|++.|++..+... .+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445554443322 2455566666666666666 666666666655422 245566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc--------CCHHH
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCKD---------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN--------GKIAE 551 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 551 (658)
+..+. .|+...+..+...+... |++++|...++++.+..+.+...|..+..+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 66654 34456666666666666 7777777777777777666777777777777766 77777
Q ss_pred HHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 006154 552 AFAMFSEMRNVGIA---VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHD 627 (658)
Q Consensus 552 A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 627 (658)
|+..|++..+.. + .+...|..+..+|...|++++|++.|+++.+.. +.+...+..+...+...|++++|++.+.
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777776642 1 256667777777777777777777777776642 2244556666666666677776665443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=1e-11 Score=124.50 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=149.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CHHHHHH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-P-----NLVIYNS 504 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~~~~~~ 504 (658)
...+...|++++|...+++.... +-.+ ....+..+...|...|++++|+..+.+..+.... + ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1011 1234555666666667777776666665542111 1 1346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCChHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GI-AVNKVGYNI 573 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ 573 (658)
+...|...|++++|...++++.+..+. ...++..++..|...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777888888888888888877654322 3458889999999999999999999999762 22 334677889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMILH----GIIPDYVTYTTLVTRFSKNCS---PEEVIELHDDMVLSGVSPDN-QTYNAII 645 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 645 (658)
++..+.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+. ..+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 999999999999999999998753 112223345667778888999 77788777766 334433 6788899
Q ss_pred HHhhcCCCCCcC
Q 006154 646 SPLLGEKSAEDQ 657 (658)
Q Consensus 646 ~~~~~~g~~~~a 657 (658)
..+...|+.++|
T Consensus 347 ~~y~~~g~~~~A 358 (383)
T 3ulq_A 347 KYYHERKNFQKA 358 (383)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHCCCHHHH
Confidence 999999998876
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=8.4e-12 Score=128.37 Aligned_cols=213 Identities=10% Similarity=-0.022 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 006154 375 VEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCV-KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLS 453 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 453 (658)
+++++..+++.... .+.+...+..+...+...|++ ++|.+.+++.++..+. +...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666665543 234667777788888888888 8888888888877644 67788888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006154 454 SMIVRGLIPDIITYGTLIDGYCKG---------GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD--------ASLD 516 (658)
Q Consensus 454 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 516 (658)
+..+.. |+...+..+...+... |++++|+..+++..+... .+...+..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888753 5667778888888888 889999999998888643 3677888888888888 8899
Q ss_pred HHHHHHHHHHHcCC---CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGL---LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 517 ~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 593 (658)
+|...++++.+..+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999888 788999999999999999999999999998853 33566788888889999988888876543
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3.4e-12 Score=123.88 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK-------GHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC--- 210 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 210 (658)
..|....++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...+++.+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999873 33445677888999999999999999999998864
Q ss_pred ---CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhcc
Q 006154 211 ---GY-VENVNTFNLVIYALCKECKLEEALSLYYRMLKS------GIWP-NVVCFNMIINEACQVGDLEFALKLFRKMGV 279 (658)
Q Consensus 211 ---g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 279 (658)
+- +....++..+...+...|++++|.+.++++.+. +-.| ...++..+...+...|++++|...++++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 234567888888999999999999999988764 1122 344677788888888999999888888532
Q ss_pred cccC---C-cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006154 280 MSGD---S-VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIK 317 (658)
Q Consensus 280 ~~~~---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 317 (658)
.... + .+....++..+...+...|++++|.+.++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 1 112245677777888888888888888887775
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=3.2e-12 Score=124.08 Aligned_cols=200 Identities=15% Similarity=0.068 Sum_probs=99.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-C
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVR------GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV------EK-K 496 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~ 496 (658)
++..+...+...|++++|...+++.... +. +.....+..+...+...|++++|...++++.+. +. .
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3344444444444444444444444332 11 112334444555555555555555555555432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 006154 497 PNLVIYNSIINGLCKDASLDAAKSLLQASQRI--------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV------ 562 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 562 (658)
.....+..+...+...|++++|...++++... .+....++..++..|...|++++|...++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12334555666666666666666666666554 1224556677777777777777777777777642
Q ss_pred -CCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 563 -GIAVNK-------VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 563 -~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...+.. ..+..+...+...+.+.+|...++..... .+.+..++..+...|.+.|++++|.+.+++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111111 11222233334445555566666666543 123455677788888888888888888888775
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.5e-10 Score=115.79 Aligned_cols=228 Identities=10% Similarity=-0.038 Sum_probs=152.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHHH
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEEHM-VG----DAYSYNILINYLCKSNNLAAAKQLLSSMIVRG--L---IP-DIITYGT 469 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~p-~~~~~~~ 469 (658)
...+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+.. . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344566777777777766654311 01 23456666777777777777777776665421 0 11 1345666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCHhhHHHH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKV----EKK-PNLVIYNSIINGLCKDASLDAAKSLLQASQR-----IGLLDAITYNTL 539 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l 539 (658)
+...|...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++... ..+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 777788888888888888776642 111 1134667778888888888888888888877 544467788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC----CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVG----IAVNKVGYNILINFLCKFGC---YQQARELMKVMILHGIIPD-YVTYTTLVT 611 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 611 (658)
+..|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++. +..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 899999999999999998887631 11123345666667777788 77777777652 22222 345667788
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 006154 612 RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999988875
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=7.8e-10 Score=110.35 Aligned_cols=298 Identities=12% Similarity=0.091 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----hhH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMVKRGLMPNNV----VYNSTIHWLFAEGDVEGALFVLSDMIDKHIC-PDH----FTY 397 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~ 397 (658)
.......+...|++++|...+++........+.. .++.+...+...|++++|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999999887764322222 4566677788889999999988887653111 121 235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 006154 398 SILTKGLCRNGCVKQAFKLHNQVLEEH----MV--G-DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI--P--DIIT 466 (658)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p--~~~~ 466 (658)
..+...+...|++++|.+.+++..+.. .. | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566777888899999999888876532 11 2 2345566777888889999999988887764221 1 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC----HhhH
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN-LVIYN-----SIINGLCKDASLDAAKSLLQASQRIGLLD----AITY 536 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 536 (658)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++......+.+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777788888999999988888765322211 11111 23344668888888888888876654431 2346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEMRN----VGIAVNK-VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
..+...+...|++++|...+++... .|..++. ..+..+..++...|+.++|...+++..... +. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 6777888888898888888887754 2222222 255667778888888888888888887531 11 11233
Q ss_pred HHHhCCChHHHHHHHHHHHHC
Q 006154 612 RFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 444455 6677777877764
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.1e-10 Score=113.41 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=151.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CChhhHH
Q 006154 365 TIHWLFAEGDVEGALFVLSDMIDKHI-CP----DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV------GDAYSYN 433 (658)
Q Consensus 365 ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~ 433 (658)
....+...|++++|+..+++..+... .+ ...++..+...+...|++++|...+++..+.... ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777665311 11 2345666677777777777777777766543111 1234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVR----GLIP-DIITYGTLIDGYCKGGNIEGAVQVYENMKK-----VEKKPNLVIYN 503 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 503 (658)
.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|+..+++..+ ... ....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHH
Confidence 7777788888888888877776652 1111 124566677788888888888888888776 322 2366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLL-----DAITYNTLINGYFINGK---IAEAFAMFSEMRNVGIAVN-KVGYNIL 574 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 574 (658)
.+...+.+.|++++|...+++..+.... ....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888888888888888888888775432 23345666666777777 77777777652 22222 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006154 575 INFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 575 ~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...|...|++++|.+.++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988775
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=7.4e-10 Score=110.52 Aligned_cols=299 Identities=13% Similarity=0.023 Sum_probs=207.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCcH----hH
Q 006154 291 THNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNV----RTYATLIDGYARGGSSEEALRLCDEMVKRGL-MPNN----VV 361 (658)
Q Consensus 291 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~~----~~ 361 (658)
........+...|++++|...+++.....-..+. .++..+...+...|++++|.+.+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556677899999999999998876422222 2456677888889999999999998765311 1122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----Chh
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMIDK----HIC--P-DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVG----DAY 430 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~ 430 (658)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778888999999999999988753 221 2 23456667888899999999999999988754321 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--IITYG----TLIDGYCKGGNIEGAVQVYENMKKVEKKPN---LVI 501 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 501 (658)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998875421111 22111 233447789999999999998876433221 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGL----L--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
+..+...+...|++++|...++....... . ....+..+..++...|+.++|...+++..... +. ...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHH
Confidence 56777888899999999999988765422 1 22367777888999999999999999988742 11 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 006154 576 NFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
..+...| +....+++.+...
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHcc--HHHHHHHHHHHhC
Confidence 3334444 5566666666654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.31 E-value=2.5e-10 Score=105.00 Aligned_cols=207 Identities=12% Similarity=0.021 Sum_probs=159.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006154 427 GDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSII 506 (658)
Q Consensus 427 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 506 (658)
.++..+......+...|++++|...|++..+....++...+..+...+...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999998765467777777888999999999999999999986433 667888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCH-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDA-------ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN---KVGYNILIN 576 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 576 (658)
..+...|++++|...++++.+..+.+. ..|..+...+...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999999988877 56888888999999999999999999885 454 566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
+|...|+ ..++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++.
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 7765543 3445555442 23344444433 3345678999999999998 5666544444433
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=2.6e-10 Score=100.81 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445555666666666666666665542 22455666666666677777777777777666666666677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL 625 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 625 (658)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776642 3455666667777777777777777777776652 33456666677777777777777777
Q ss_pred HHHHHH
Q 006154 626 HDDMVL 631 (658)
Q Consensus 626 ~~~m~~ 631 (658)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2e-10 Score=122.85 Aligned_cols=165 Identities=18% Similarity=0.094 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
..+++.+...+.+.|++++|++.|++.++... -+...+..+..+|.+.|++++|+..|++..+.... +...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34455555555555555555555555544321 13444444555555555555555555555443221 34444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|.+.++++.+..+.+..+|+.++.+|...|++++|++.|++.++.. +-+...+..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555555544455555555555555555555555555554431 112344444555555555555555
Q ss_pred HHHHHHHH
Q 006154 589 ELMKVMIL 596 (658)
Q Consensus 589 ~~~~~~~~ 596 (658)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=5.6e-10 Score=98.64 Aligned_cols=164 Identities=15% Similarity=0.002 Sum_probs=113.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLC 510 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (658)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44555566666667777776666665542 2345666666667777777777777777766652 235566667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAREL 590 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 590 (658)
..|++++|...++++....+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777766677777777777777888888888887777653 34566777777778888888888888
Q ss_pred HHHHHHc
Q 006154 591 MKVMILH 597 (658)
Q Consensus 591 ~~~~~~~ 597 (658)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777653
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=2.6e-10 Score=121.94 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID 472 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 472 (658)
+...++.+...+.+.|++++|++.|++.++..+. +..++..+...|.+.|++++|++.|++.++... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4567888888888888888888888888887654 677888888888888888888888888887632 25777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHH
Q 006154 473 GYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEA 552 (658)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 552 (658)
.+.+.|++++|++.|++..+.... +...+..+...+...|++++|...++++.+..+.+..+|..++.+|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888888876433 5678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 006154 553 FAMFSEMRN 561 (658)
Q Consensus 553 ~~~~~~~~~ 561 (658)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887766
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=9e-10 Score=101.27 Aligned_cols=200 Identities=11% Similarity=0.019 Sum_probs=162.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 392 PDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLI 471 (658)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li 471 (658)
.|+..+......+...|++++|.+.|++..+..+.++...+..+..++...|++++|...+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 466788888999999999999999999999987656778888899999999999999999999998643 2567888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNL-------VIYNSIINGLCKDASLDAAKSLLQASQRIGLL--DAITYNTLING 542 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 542 (658)
..+...|++++|+..+++..+..+. +. ..|..+...+...|++++|...++++.+..+. +..+|..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999986432 44 45778888889999999999999999999988 88999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+. .|+.
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 87654 34556666543 23444444333 34556789999999999985 4543
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=6.4e-10 Score=106.49 Aligned_cols=129 Identities=10% Similarity=-0.012 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh-----
Q 006154 501 IYNSIINGLCKD-ASLDAAKSLLQASQRIGLLD------AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK----- 568 (658)
Q Consensus 501 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 568 (658)
++..+...|... |++++|...+++..+..+.+ ..++..++..+...|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455556666664 77777776666665543321 345667777777777777777777777764322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hCCChHHHHHHHHHHHH
Q 006154 569 -VGYNILINFLCKFGCYQQARELMKVMILHGIIPDYV------TYTTLVTRFS--KNCSPEEVIELHDDMVL 631 (658)
Q Consensus 569 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 631 (658)
..|..++.++...|++++|+..+++..+. .|+.. .+..++.++. ..+++++|+..|+++..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 14556666777777777777777776642 33311 2333444443 34567777777766543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.8e-10 Score=108.46 Aligned_cols=226 Identities=17% Similarity=0.066 Sum_probs=158.9
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 006154 405 CRNGCVKQAFKLHNQVLEE-------HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVR------GLIP-DIITYGTL 470 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l 470 (658)
...|++++|..++++..+. ..+....++..+...+...|++++|...++++... +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766652 22234667888999999999999999999998864 2222 35677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHhh
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKV------E-KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRI--------GLLDAIT 535 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 535 (658)
...+...|++++|...++++.+. . .+....++..+...+...|++++|...++++.+. .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 1 1223567888889999999999999999998876 2336778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-hHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV-------GIAVN-KVGYNILINFLCKFGCYQ------QARELMKVMILHGIIP 601 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~g~~p 601 (658)
+..++..|...|++++|...++++.+. ...+. ...+..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 899999999999999999999998753 11222 333444444444333322 22222222111 1122
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
...++..+...|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888999999999999999999875
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=2.3e-10 Score=108.98 Aligned_cols=226 Identities=13% Similarity=-0.007 Sum_probs=161.3
Q ss_pred HhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChhhHHHH
Q 006154 370 FAEGDVEGALFVLSDMIDK-------HICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEE------HM-VGDAYSYNIL 435 (658)
Q Consensus 370 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 435 (658)
...|++++|+..+++..+. ..+....++..+...+...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766542 22334667888999999999999999999998865 21 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHH
Q 006154 436 INYLCKSNNLAAAKQLLSSMIVR------GL-IPDIITYGTLIDGYCKGGNIEGAVQVYENMKKV------EKKP-NLVI 501 (658)
Q Consensus 436 ~~~~~~~~~~~~A~~~~~~~~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 501 (658)
...+...|++++|...+.+.... .. +.....+..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998865 11 223567788889999999999999999998864 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCHhhHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCC
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRI---------GLLDAITYNTLINGYFINGKIA------EAFAMFSEMRNVGIAV 566 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p 566 (658)
+..+...+...|++++|...++++.+. .+.....|..+...+...+... ++...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998764 1224445555555544433322 22222222211 1122
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...++..++..|...|++++|.+.+++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355788899999999999999999999875
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=3.3e-09 Score=95.71 Aligned_cols=137 Identities=10% Similarity=-0.016 Sum_probs=88.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC- 583 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~- 583 (658)
+...+...|++++|...++++.+..|.+..++..++.++...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 66777777888888888887777777777777777888888888888888887777753 3346667777777655543
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006154 584 -YQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIIS 646 (658)
Q Consensus 584 -~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 646 (658)
.+.+...++.... ..|....+.....++...|++++|...|++.++ +.|+......+.+
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3344555554432 222233334445556667778888888887776 5677655554443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=4.3e-08 Score=91.65 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=113.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 378 ALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHM-VGDAYSYNILINYLCKSNNLAAAKQLLSSMI 456 (658)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 456 (658)
|+..++++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 34455555667777777888888877777766554 2255666677777777888888888887776
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 457 VRGLIP-----DIITYGTLIDGYC--KGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQR 527 (658)
Q Consensus 457 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 527 (658)
+. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2444445554422 223 777888888887654 34433333444467777888888877776554
Q ss_pred c----------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006154 528 I----------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 528 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 562 (658)
. .+.++.++..++......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 24467777555555555666 677777777774
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=3.4e-09 Score=101.45 Aligned_cols=170 Identities=9% Similarity=-0.060 Sum_probs=111.1
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICK-ATPAVFDALVRACTQIGATEGAYDVIQKLK 173 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 173 (658)
..|...+.++...|++++|...+++.++. ... . +.+ ....+|..+..+|.+.|++++|+..|++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~--------~~~----~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADY--------QKK----A-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHH--------HHH----T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHH----h-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555667778888999998888877651 110 0 111 124677888888888888888888888876
Q ss_pred hCCCcc-----CHHhHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 174 VKGHSV-----SIHAWNNFLSHLVKL-NEIGRFWKLYKEMVSCGYVE-N----VNTFNLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 174 ~~g~~~-----~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
+..... ...+++.+...|... |++++|+..|++.++..... + ..+++.+...+.+.|++++|+..|++.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 632110 134677777777775 88888888887777531100 1 345667777777778888888888777
Q ss_pred HhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 243 LKSGIWPNVV------CFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 243 ~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
.+........ .|..+..++...|++++|...|++.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7654332211 4556666777777777777777773
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=5.5e-08 Score=90.93 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=124.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 006154 332 DGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVK 411 (658)
Q Consensus 332 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (658)
+-..-.|.+..++.- ..+.....+...-..+.++|...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344456777777662 22221111222333344666666665431 112222223333332 22222
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 412 QAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGL-IPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
|+..+++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665544 23444445666667777777777777776655443 124455556666677777777777777777
Q ss_pred HhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 491 KKVEKKP-----NLVIYNSIINGLC--KDA--SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 491 ~~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+. .| +..+...+..++. ..| ++.+|..+|+++....+. ......+..++.+.|++++|.+.++.+.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 653 33 2444444444422 223 666777777776555442 11122222256666777777776665543
Q ss_pred CC---------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 562 VG---------IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 562 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.. -+.|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02244555455555555565 666666666663
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=8.4e-09 Score=85.41 Aligned_cols=128 Identities=19% Similarity=0.207 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|..+++++.+..+.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555666666666666666666666655566666666667777777777777777766543 33455666666777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 582 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777766642 23455666666777777777777777777665
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=1.1e-07 Score=97.40 Aligned_cols=376 Identities=10% Similarity=-0.000 Sum_probs=201.2
Q ss_pred hcC-ChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHH
Q 006154 158 QIG-ATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECK-LEEA 235 (658)
Q Consensus 158 ~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~-~~~A 235 (658)
+.| +++.|..+|+.+.+. -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 457 488899999888774 222 8999999999999985 4799999988887777663 4567
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHH----hcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHH---hcCChH
Q 006154 236 LSLYYRMLKS-GIWP-NVVCFNMIINEAC----QVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFC---KLGRVE 306 (658)
Q Consensus 236 ~~~~~~m~~~-~~~p-~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~ 306 (658)
..+|+..+.. |..| +...|...+..+. ..|+.+.+.++|++. .. +++. .+..+-..|. +.....
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA---L~--~P~~--~~~~lw~~Y~~fE~~~~~~ 140 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA---LQ--TPMG--SLSELWKDFENFELELNKI 140 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH---HT--SCCT--THHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH---Hh--Chhh--hHHHHHHHHHHHHHHhccc
Confidence 7788887653 4333 4456666666543 245678888999884 33 2211 1122222221 111122
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcC--C-----HHHHH
Q 006154 307 FAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEG--D-----VEGAL 379 (658)
Q Consensus 307 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g--~-----~~~a~ 379 (658)
.+.++..+.. +.+..|..+++++...-...+...|...+..-...+ - .+.+.
T Consensus 141 ~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 141 TGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred cHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 2222222211 123334444433332100012334444444322211 0 23455
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006154 380 FVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRG 459 (658)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 459 (658)
.+|++++... +.+...|...+..+.+.|+.++|.+++++.... + .+...+.. |....+.++. ++.+.+.-
T Consensus 200 ~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y~~~~e~~~~---~~~l~~~~ 269 (493)
T 2uy1_A 200 FIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----YGLVMDEEAV---YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----HHHHTTCTHH---HHHHHHHT
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----HHhhcchhHH---HHHHHHHH
Confidence 6777776642 334666666666677777888888888877776 2 23222221 2211111111 22221110
Q ss_pred ---------CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006154 460 ---------LIP---DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK-DASLDAAKSLLQASQ 526 (658)
Q Consensus 460 ---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 526 (658)
..+ ....|...+....+.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 000 1233445555555566777777777777 32 12233344322222222 235777777777777
Q ss_pred HcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 527 RIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 527 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+.++..+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7665566666666776677777777777777762 1355566666666667777777777776663
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=5.8e-09 Score=98.09 Aligned_cols=133 Identities=10% Similarity=-0.057 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD---IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-P-NLVIY 502 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~ 502 (658)
+...+..+...+.+.|++++|...|++++..... + ...+..+..++.+.|++++|+..|+++.+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555666667777777777777777777765321 2 455666677777777777777777777765321 1 23455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCHhhH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 006154 503 NSIINGLCK--------DASLDAAKSLLQASQRIGLLDAITY-----------------NTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 503 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 557 (658)
..+..++.. .|++++|...|+++.+..|.+.... ..++..|...|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 566666666 7777777777777777766644444 233444445555555555555
Q ss_pred HHHH
Q 006154 558 EMRN 561 (658)
Q Consensus 558 ~~~~ 561 (658)
++.+
T Consensus 173 ~~l~ 176 (261)
T 3qky_A 173 AVFD 176 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=1e-08 Score=92.47 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
.+...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|...++++.+..|.+..+|..++..|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 4778889999999999999999987433 778899999999999999999999999999999999999999999877664
Q ss_pred --HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 549 --IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 549 --~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
.+.+...++.... ..|....+..+..++...|++++|+..|+++++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3445566665543 233333445566777888999999999999997 467765544433
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=3.8e-07 Score=93.49 Aligned_cols=377 Identities=14% Similarity=0.039 Sum_probs=225.0
Q ss_pred hcC-CHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 006154 193 KLN-EIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGD-LEFA 270 (658)
Q Consensus 193 ~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A 270 (658)
+.| +++.|+.+|+.++.. -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887764 233 8899999999998875 4788888888887776663 3456
Q ss_pred HHHHHHhcccccCCcC-CChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChHH
Q 006154 271 LKLFRKMGVMSGDSVL-PNSVTHNCIINGFC----KLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYA---RGGSSEE 342 (658)
Q Consensus 271 ~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~ 342 (658)
..+|+.. +..-|.. .+...|...+..+. ..|+.+.+.++|++.... ++. .+..+-..|. +......
T Consensus 68 ~~~fe~a--l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~ 141 (493)
T 2uy1_A 68 YEVYEFT--LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKIT 141 (493)
T ss_dssp HHHHHHH--HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHH--HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhcccc
Confidence 6677764 2222322 24566666666543 235677888888888863 221 1122222221 1111222
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--C-----hHHHHH
Q 006154 343 ALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG--C-----VKQAFK 415 (658)
Q Consensus 343 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~a~~ 415 (658)
+.+++.+.. +.+..|...++++...-...+...|...+..-...+ - .+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222222211 123333433433332100012334444444322211 1 345677
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 006154 416 LHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVE- 494 (658)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 494 (658)
+|++++...+. +...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 201 IHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHH
Confidence 89988886544 6788888899999999999999999999987 33332222 22222222222 22222210
Q ss_pred --------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHC
Q 006154 495 --------K---KPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFING-KIAEAFAMFSEMRNV 562 (658)
Q Consensus 495 --------~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 562 (658)
. .....+|...+....+.++.+.|..+|+.+ .....+...|...+..-...+ +.+.|..+|+...+.
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 111245666677666788899999999999 322224455544333333333 699999999999875
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 563 GIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 563 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
. +.+...+...++...+.|+.+.|..+|+++. .....|..++..-...|+.+.+..+++++.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 3335556667888889999999999999972 2577888888877788999999999988875
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1.9e-08 Score=83.15 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++....+.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 44555566666777777777766665432 24556666666667777777777777777766666666777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777776643 334566677777777777777777777777654
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=1.6e-08 Score=95.03 Aligned_cols=185 Identities=8% Similarity=-0.051 Sum_probs=114.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-ChhhH
Q 006154 358 NNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPD---HFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-G-DAYSY 432 (658)
Q Consensus 358 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~ 432 (658)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+++++..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455666666777777777777777777765322 2 455666666777777777777777777765432 1 13345
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 006154 433 NILINYLCK--------SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNS 504 (658)
Q Consensus 433 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 504 (658)
..+..++.. .|++++|...|++++..... +......+.. +..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 555666666 66777777777666654221 1111111100 0000000 0111356
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFIN----------GKIAEAFAMFSEMRNV 562 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 562 (658)
+...+...|++++|...++.+.+..|. ....+..++.+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 677788889999999999998887776 455777888888766 8888888888888874
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=2.5e-07 Score=87.57 Aligned_cols=231 Identities=12% Similarity=0.030 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN--NLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKG---GNIE 481 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g~~~ 481 (658)
++|+++.+.++..++. +..+|+.--..+...+ +++++++.++.++..... +...|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666655443 4445555555555555 666666666666654332 333333322222 233 5666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC------HHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLD--AAKSLLQASQRIGLLDAITYNTLINGYFINGK------IAEAF 553 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~ 553 (658)
+++.+++++.+...+ +..+|..-...+...|.++ ++.+.++++.+..+.+..+|+.....+...|+ +++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 666666666665333 5555555555555566655 66666677766666666666666666655555 66677
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ-ARELMKVMILHG--IIPDYVTYTTLVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
+.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..+...+.+.|+.++|.+.++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7776666653 3456666666666666665333 344555444322 12355666666667777777777777777766
Q ss_pred HCCCCCC-HHHHHHHHH
Q 006154 631 LSGVSPD-NQTYNAIIS 646 (658)
Q Consensus 631 ~~g~~p~-~~~~~~l~~ 646 (658)
++ +.|- ...|+...+
T Consensus 286 ~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 286 SK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HT-TCGGGHHHHHHHHH
T ss_pred hc-cChHHHHHHHHHHh
Confidence 53 3333 344444433
No 100
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=2.3e-07 Score=87.80 Aligned_cols=224 Identities=8% Similarity=-0.026 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCHH
Q 006154 376 EGALFVLSDMIDKHICPDHFTYSILTKGLCRNG--CVKQAFKLHNQVLEEHMVGDAYSYNILINYL----CKS---NNLA 446 (658)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 446 (658)
++|+.+++.++..++. +...++.-...+...| +++++++.++.++..+++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3455555554443222 2233343334444444 555566666555555443 344444333333 333 5666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 006154 447 AAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE--GAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS------LDAA 518 (658)
Q Consensus 447 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a 518 (658)
+++.+++.+.+... -+...|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 66677766666533 25566665555556666666 777777777765443 55566555555555555 7888
Q ss_pred HHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 519 KSLLQASQRIGLLDAITYNTLINGYFINGKIAE-AFAMFSEMRNVG--IAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
.+.++.+....+.|..+|+.+...+.+.|+..+ +..+..++.+.+ -+.+...+..++..|.+.|+.++|+++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888888888888888888888888887444 444555554432 13466778888888888899999999999887
Q ss_pred HcCCCCCHH
Q 006154 596 LHGIIPDYV 604 (658)
Q Consensus 596 ~~g~~p~~~ 604 (658)
+. +.|-..
T Consensus 286 ~~-~Dpir~ 293 (306)
T 3dra_A 286 SK-YNPIRS 293 (306)
T ss_dssp HT-TCGGGH
T ss_pred hc-cChHHH
Confidence 63 344433
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=9e-08 Score=86.45 Aligned_cols=174 Identities=16% Similarity=-0.003 Sum_probs=84.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 006154 413 AFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG----NIEGAVQVYE 488 (658)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 488 (658)
|.+.|++..+.| ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|++.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444455555555555555555555555442 33344444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 006154 489 NMKKVEKKPNLVIYNSIINGLCK----DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFI----NGKIAEAFAMFSE 558 (658)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 558 (658)
+..+.+ +...+..+...|.. .+++++|...+++..+.++. .+.++..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 33444444444443 44555555555555554432 24555555555555 4555555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 006154 559 MRNVGIAVNKVGYNILINFLCKF-G-----CYQQARELMKVMILHG 598 (658)
Q Consensus 559 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 598 (658)
..+. +.+...+..|...|... | ++++|+..+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5553 12333444444444432 2 5555555555555544
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=1.1e-08 Score=110.05 Aligned_cols=173 Identities=9% Similarity=-0.102 Sum_probs=130.0
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 405 CRNGCVKQAFKLHNQVL--------EEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
...|++++|++.+++.. +..+. +...+..+...+...|++++|...++++.+... .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56778888888888877 43322 566777778888888888888888888877532 356777778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.|++++|+..|++..+.... +...+..+..++...|++++ ...++++.+..+.+..+|..+..++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888876433 56777788888888888888 88888888888888888888888888888888888888
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHHhcCC
Q 006154 557 SEMRNVGIAVN-KVGYNILINFLCKFGC 583 (658)
Q Consensus 557 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 583 (658)
+++.+. .|+ ...+..+..++...|+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 888774 344 5566667777665554
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=8.4e-09 Score=90.24 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=101.2
Q ss_pred HhHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 95 ESSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
+.+...+..+.+.|++++|...++++++ ..|.++.++..+..++.+.|++++|...+++..+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~------------------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSD------------------ELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCH------------------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3556667777777888888777777665 3556677777777788888888888888777766
Q ss_pred CCCccCHHhHHHHHHH-HHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-Chh
Q 006154 175 KGHSVSIHAWNNFLSH-LVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWP-NVV 252 (658)
Q Consensus 175 ~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~ 252 (658)
..+ ++..+..+... +...+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+..+.+ +..
T Consensus 69 ~~p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 145 (176)
T 2r5s_A 69 EYQ--DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE 145 (176)
T ss_dssp GGC--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred ccC--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence 533 44333222211 112223334566666666543 2346666667777777777777777777776654322 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 253 CFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 253 ~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
.+..+...+...|+.++|...|++
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666666677777777777766665
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=1.6e-07 Score=85.79 Aligned_cols=185 Identities=11% Similarity=-0.009 Sum_probs=115.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLI-PD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL--VIYN 503 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 503 (658)
+...+..+...+.+.|++++|...|+++...... |. ...+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667778888888888888888775322 11 345666777888888888888888888775333111 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 504 SIINGLCK------------------DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 504 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
.+..++.. .|++++|...|+++.+..|.+..++......... ...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----------~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----------KDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHHH-----
Confidence 44444433 3455556666665555555443333221110000 00000
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD----YVTYTTLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134567788999999999999999875 333 246777888899999999999999988875
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.3e-07 Score=85.43 Aligned_cols=178 Identities=11% Similarity=-0.015 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA----SLDAAKSL 521 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 521 (658)
.+|.+.|++..+.| +...+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888888764 77888888899999999999999999999864 66777788888877 6 89999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006154 522 LQASQRIGLLDAITYNTLINGYFI----NGKIAEAFAMFSEMRNVGIA-VNKVGYNILINFLCK----FGCYQQARELMK 592 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 592 (658)
|++..+.+ ++.++..|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|++.|+
T Consensus 76 ~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 76 AEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99997765 78889999999987 88999999999999987521 126788899999998 889999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHCCC
Q 006154 593 VMILHGIIPDYVTYTTLVTRFSKN-C-----SPEEVIELHDDMVLSGV 634 (658)
Q Consensus 593 ~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 634 (658)
+..+. .++...+..+...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99986 23455677777777653 3 89999999999998874
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=4.6e-09 Score=88.97 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 477 GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.|++++|+..+........ -+...+..+...|.+.|++++|.+.++++.+..|.++.+|..++.+|...|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 3444444444444433211 112233334444444444444444444444444444444444444444444555554444
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCCHHHH
Q 006154 557 SEMRNVGIAVNKVGYNILINFLCKFGCYQQA 587 (658)
Q Consensus 557 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 587 (658)
++..+.. +-+...+..+...|.+.|++++|
T Consensus 89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Confidence 4444421 11234444444444444444433
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.4e-08 Score=109.31 Aligned_cols=176 Identities=9% Similarity=-0.080 Sum_probs=138.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 440 CKSNNLAAAKQLLSSMI--------VRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 440 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
...|++++|++.+++.. +. .+.+...+..+...+.+.|++++|+..|+++.+.... +...+..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67889999999999887 33 2335667778888888999999999999998876433 67788888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELM 591 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 591 (658)
.|++++|...|+++.+..+.+...|..+..+|.+.|++++ ++.|+++.+.+ +.+...|..+..++.+.|++++|++.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999988888899999999999999999 99999988853 345678888999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhCCChHH
Q 006154 592 KVMILHGIIPD-YVTYTTLVTRFSKNCSPEE 621 (658)
Q Consensus 592 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 621 (658)
+++.+. .|+ ...+..+..++...|+.++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCC
Confidence 988764 455 4566667777766666333
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.7e-08 Score=88.24 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=100.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LC 510 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 510 (658)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..++++.+... +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 44455556666777777776666554321 2455666666667777777777777766655422 33322221111 11
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGCYQQARE 589 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 589 (658)
..+....|...+++..+..|.+...+..+...+...|++++|...|+++.+....+ +...+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22223346777777777777777777788888888888888888888777754222 24567777777777788777777
Q ss_pred HHHHHHH
Q 006154 590 LMKVMIL 596 (658)
Q Consensus 590 ~~~~~~~ 596 (658)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776653
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.5e-07 Score=85.95 Aligned_cols=186 Identities=11% Similarity=-0.024 Sum_probs=130.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGD--AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI--ITYG 468 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~ 468 (658)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566677888999999999999999998754322 357788899999999999999999999986433211 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 469 TLIDGYCK------------------GGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGL 530 (658)
Q Consensus 469 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 530 (658)
.+..++.. .|++++|+..|+++.+..+. +..........- .+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~------ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDR------ 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHH------
Confidence 44555543 57899999999999986332 232222211110 00000
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 531 LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK----VGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
.......++..|.+.|++++|+..|+++.+. .|+. ..+..++.++.+.|+.++|++.++.+...+
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1112235677888899999999999999874 2432 457788899999999999999999888753
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=7.2e-09 Score=87.77 Aligned_cols=145 Identities=12% Similarity=-0.040 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY 584 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 584 (658)
|...+...|++++|...++......+.++..+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 34455677899999999999888777788888899999999999999999999999864 44688899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHhhcCCC
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIEL-HDDMVLSGVSPD-NQTYNAIISPLLGEKS 653 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 653 (658)
++|+..|++.++.. +-+...|..+...|.+.|++++|.+. +++..+ +.|+ ..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999863 23577899999999999999876665 688887 4564 4667766666666664
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=4.9e-08 Score=92.93 Aligned_cols=165 Identities=13% Similarity=-0.000 Sum_probs=108.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYN-SII 506 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 506 (658)
+...+..+...+...|++++|...+++...... .+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 444555666667777777777777777766532 255666667777777777777777777766542 3333222 222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCCHH
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV-NKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 585 (658)
..+...++.++|...+++.....|.+...+..+...+...|++++|+..|+++.+..... +...+..++..+...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 234556666777777777777777777777777777777777777777777777643111 1456677777777777777
Q ss_pred HHHHHHHHHH
Q 006154 586 QARELMKVMI 595 (658)
Q Consensus 586 ~A~~~~~~~~ 595 (658)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777776654
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=5.1e-08 Score=92.83 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=122.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 006154 393 DHFTYSILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGT-LI 471 (658)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-li 471 (658)
+...+..+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4455666667777788888888888888777654 66777778888888888888888888776643 34332222 22
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HhhHHHHHHHHHHcCCH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD--AITYNTLINGYFINGKI 549 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 549 (658)
..+.+.++.++|+..+++..+..+ .+...+..+...+...|++++|...+.++.+..+.+ ...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 335566777888888888877643 367788888888888888888888888888887774 77888888888888888
Q ss_pred HHHHHHHHHHHH
Q 006154 550 AEAFAMFSEMRN 561 (658)
Q Consensus 550 ~~A~~~~~~~~~ 561 (658)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=6.4e-08 Score=102.33 Aligned_cols=154 Identities=10% Similarity=0.012 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSL 521 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 521 (658)
.|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788889999988877532 3577888888888899999999999999888643 3677888888889999999999999
Q ss_pred HHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 006154 522 LQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF---GCYQQARELMKVMILHG 598 (658)
Q Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g 598 (658)
++++.+..+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999998888888899999999999999999999999988753 34567788888888888 99999999999988764
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=7.6e-08 Score=92.73 Aligned_cols=128 Identities=13% Similarity=-0.046 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEK---KP--NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
|..+...|.+.|++++|+..|++..+... .+ ...++..+...|.. |++++|...+++.....+. ...+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 157 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAEL 157 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 34444455555555555555554433200 01 12344555555555 6666666666665543221 1345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN-KVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+..+...|...|++++|+..|++..+. +..+. ...+..++.++...|++++|+..+++..
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666777777777777777666542 11111 1244555556666677777777777766
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=1.3e-07 Score=100.00 Aligned_cols=165 Identities=8% Similarity=-0.063 Sum_probs=127.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006154 407 NGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQV 486 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 486 (658)
.|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999887544 678899999999999999999999999998643 3678889999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---GKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 563 (658)
+++..+... .+...+..+...+...|++++|.+.++++.+..+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999998643 36788999999999999999999999999999998999999999999999 99999999999998864
Q ss_pred CCCChHHHHHHH
Q 006154 564 IAVNKVGYNILI 575 (658)
Q Consensus 564 ~~p~~~~~~~l~ 575 (658)
+.+...|..+.
T Consensus 159 -p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 -VGAVEPFAFLS 169 (568)
T ss_dssp -CCCSCHHHHTT
T ss_pred -CcccChHHHhC
Confidence 22344444433
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=7.2e-07 Score=80.56 Aligned_cols=124 Identities=14% Similarity=-0.003 Sum_probs=72.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC
Q 006154 469 TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGK 548 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 548 (658)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...++++....+.+..+|..++.+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 33444555566666666655542 33555566666666666666666666666666555566666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 549 IAEAFAMFSEMRNVGIAVNK----------------VGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+++|...|+++.+.. +.+. ..+..+..++.+.|++++|.+.++++.+.
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666665532 1111 45556666666666666666666666653
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=4.9e-06 Score=79.50 Aligned_cols=218 Identities=10% Similarity=0.063 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 006154 411 KQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKG-G-NIEGAVQVY 487 (658)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~ 487 (658)
++|+++++.++..++. +..+|+.--..+...| .+++++..++.+.....+ +...|+.-...+.+. + +++++++++
T Consensus 71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4555555555555433 4444544444444445 355555555555554322 444444444444433 4 555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCC-------HHHH
Q 006154 488 ENMKKVEKKPNLVIYNSIINGLCKDASLD--------AAKSLLQASQRIGLLDAITYNTLINGYFINGK-------IAEA 552 (658)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A 552 (658)
+++.+...+ +...|+.-...+...|.++ ++.+.++++.+..+.|..+|+.....+.+.++ ++++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 555554322 4444444333333333333 56666666666666666666666666555554 4566
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHHHH
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLCKFGCY--------------------QQARELMKVMILHG-----IIPDYVTYT 607 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~~~~~~ 607 (658)
++.+++++... +-|...|+.+-..+.+.|+. ....++...+...+ -.++...+.
T Consensus 228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 66666665542 33455555555555554432 22222222222211 124566677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 006154 608 TLVTRFSKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 608 ~l~~~~~~~g~~~~A~~~~~~m~~~ 632 (658)
.++..|...|+.++|.++++.+.++
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7777777777777788877777654
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=2.5e-06 Score=81.39 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNL-----VIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++++...... ...+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455666777777777777776664322111 12333455566777888888888877754332 1457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV-GIAVN-----KVGYNILINFLCKFGCYQQARELMKVMILHG----IIP-DYV 604 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~ 604 (658)
|+.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|++.+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888888888888887621 01122 2577888888889999999999888877531 111 156
Q ss_pred HHHHHHHHHHhCCChHHH-HHHHHHHHH
Q 006154 605 TYTTLVTRFSKNCSPEEV-IELHDDMVL 631 (658)
Q Consensus 605 ~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 631 (658)
+|..+...|.+.|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 777888888889999888 776777654
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=8.7e-06 Score=77.75 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH------
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKS-N-NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIE------ 481 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~------ 481 (658)
+++++++++.++..+++ +..+|+.-...+.+. + ++++++++++++.+... -+...|+.-.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhh
Confidence 45555555555544433 444444444444433 3 45555555555554422 24444444333333333333
Q ss_pred --HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH---
Q 006154 482 --GAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS-------LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI--- 549 (658)
Q Consensus 482 --~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 549 (658)
++++.++++.+..+. |...|+.....+.+.++ ++++.+.++++....+.|..+|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc
Confidence 666777777665433 56666666666655554 67788888888888888888888877777766653
Q ss_pred -----------------HHHHHHHHHHHHCC-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006154 550 -----------------AEAFAMFSEMRNVG-----IAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 550 -----------------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
.+......++...+ -.++...+..+++.|...|+.++|.++++.+.+. ..|-..-|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~y 339 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGY 339 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHH
Confidence 22222222222221 1356777888899999999999999999998754 44544433
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.7e-06 Score=80.24 Aligned_cols=162 Identities=14% Similarity=0.015 Sum_probs=116.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C----HhhHHH
Q 006154 470 LIDGYCKGGNIEGAVQVYENMKKVEK-KPNL----VIYNSIINGLCKDASLDAAKSLLQASQRIGLL--D----AITYNT 538 (658)
Q Consensus 470 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~----~~~~~~ 538 (658)
.+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++...... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888776422 1221 12334566666777888888888888875433 2 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006154 539 LINGYFINGKIAEAFAMFSEMRN----V-GIAVN-KVGYNILINFLCKFGCYQQARELMKVMILH----GIIPD-YVTYT 607 (658)
Q Consensus 539 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 607 (658)
++..|...|++++|...++++.+ . +..+. ..++..++..|.+.|++++|++.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999988874 1 11222 336788889999999999999999887743 22222 56788
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHH
Q 006154 608 TLVTRFSKNCS-PEEVIELHDDMVL 631 (658)
Q Consensus 608 ~l~~~~~~~g~-~~~A~~~~~~m~~ 631 (658)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999994 6999998888765
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.5e-06 Score=80.40 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 006154 435 LINYLCKSNNLAAAKQLLSSMIVRGL-IPDI----ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNS 504 (658)
Q Consensus 435 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 504 (658)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776422 1221 12334556666778899999999988874322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----c--CCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-hHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQR----I--GLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN----VGIAVN-KVGYN 572 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~ 572 (658)
+...|...|++++|...++++.+ . ... ...++..++..|.+.|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999988874 1 111 455888999999999999999999998865 222222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 006154 573 ILINFLCKFG-CYQQARELMKVMIL 596 (658)
Q Consensus 573 ~l~~~~~~~g-~~~~A~~~~~~~~~ 596 (658)
.+..++.+.| ++++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999988774
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=2.5e-07 Score=75.31 Aligned_cols=96 Identities=16% Similarity=0.073 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
..+...+..|.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344444455555555555555555554432 2234444555555555555555555555555431 12344445555555
Q ss_pred HhCCChHHHHHHHHHHHH
Q 006154 614 SKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 614 ~~~g~~~~A~~~~~~m~~ 631 (658)
...|++++|.+.|++.++
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555554
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=3.3e-06 Score=80.56 Aligned_cols=166 Identities=11% Similarity=0.022 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--HH
Q 006154 431 SYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDI-----ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKK---PN--LV 500 (658)
Q Consensus 431 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~ 500 (658)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677788888888888777665322111 12334555667788999999999888754221 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-Ch
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQ---RIGLL----DAITYNTLINGYFINGKIAEAFAMFSEMRNVG----IAV-NK 568 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 568 (658)
+++.+...|...|++++|...++++. +..+. ...++..++..|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888889999999999999999887 33332 22688899999999999999999999886521 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQA-RELMKVMIL 596 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 596 (658)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777877663
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=4.6e-07 Score=73.77 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+......+.+.|++++|...|+++.+..|.+..+|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 455566667777777777777777777777777777777777777777777777777776643 3345667777777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 006154 581 FGCYQQARELMKVMILH 597 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~ 597 (658)
.|++++|++.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 77777777777777764
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=8.4e-07 Score=76.32 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 006154 501 IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK 580 (658)
Q Consensus 501 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 580 (658)
.+..+...+...|++++|...++++....+.+..++..++..+...|++++|...+++..+.. +.+...+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666666777777777777777777666642 3345566666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCChHHHHHHHHHHH
Q 006154 581 FGCYQQARELMKVMILHGIIPDYVTYTT--LVTRFSKNCSPEEVIELHDDMV 630 (658)
Q Consensus 581 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~ 630 (658)
.|++++|.+.++++.+.. +.+...+.. .+..+.+.|++++|.+.+++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777766542 123333322 2233556677777777666554
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.68 E-value=4.8e-07 Score=76.05 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
..+..+...+...|++++|...|+++....|.++..|..+..+|...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3555566666677777777777777777777677777777777777777777777777776643 334566667777777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006154 580 KFGCYQQARELMKVMILH 597 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~ 597 (658)
+.|++++|+..|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777664
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.6e-06 Score=78.15 Aligned_cols=127 Identities=11% Similarity=-0.086 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006154 432 YNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCK 511 (658)
Q Consensus 432 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 511 (658)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|+..+++..+.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445556666777777777776553 3466667777777777777777777777776653 2355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 512 DASLDAAKSLLQASQRIGLLDA----------------ITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.|++++|...++++.+..+.+. .++..++.+|...|++++|...|+++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777777655433 778888888888899999988888888753
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.3e-06 Score=75.13 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+..+.+...+..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455666677778888888888888777532 356777788888888888888888888888887778888888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCChHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRNVGIAVNKVGYNI--LINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
..|++++|...++++.+.. +.+...+.. ++..+...|++++|++.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888888888888887753 234444433 33446777888888888876653
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=2.8e-07 Score=77.50 Aligned_cols=103 Identities=9% Similarity=-0.049 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..|.++.++..+...+.+.|++++|.+.|++..+..+. ++..|..+..+|.+.|++++|+..|++.++.. +.+...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 34556678888888999999999999999998887543 78888888889999999999999999988764 34567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
.+..++.+.|++++|...|++.++.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999888876
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=1.5e-07 Score=89.13 Aligned_cols=100 Identities=7% Similarity=-0.062 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
.+...+..+...+.+.|++++|...|++..+..+. +...|..+...|.+.|++++|...+++.++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566777788888888888888888888776432 67777778888888888888888888877753 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006154 224 YALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888888888777654
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=1.4e-06 Score=80.34 Aligned_cols=139 Identities=7% Similarity=-0.089 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN--KVGYNILINFLC 579 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 579 (658)
...+...+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34456667777888888888877776665555 66666677888888888888887555421 111 235667777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 580 KFGCYQQARELMKVMILHGIIPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 580 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
..|++++|+..|++.......|. .........++.+.|+.++|...|+++.. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 88888888888888775332243 33555666677788888888888888887 45664444443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=4.5e-07 Score=81.11 Aligned_cols=133 Identities=12% Similarity=-0.069 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRI------GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-- 566 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-- 566 (658)
...+..+...+...|++++|...+++.... .+....++..+...+...|++++|...+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444555555555555555544431 1113445555666666666666666666555431 1011
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 567 NKVGYNILINFLCKFGCYQQARELMKVMILHG---IIPD--YVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 567 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
....+..+...+...|++++|...+++..... -.+. ..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 12335555666666666666666666655320 0111 12344555566666666666666666554
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=3.2e-07 Score=80.13 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=68.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHH-HHHcCCH--HHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLING-YFINGKI--AEA 552 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 552 (658)
..|++++|+..+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44566666666666555422 2455566666666666666666666666666655566666666666 5566665 666
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 553 FAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 553 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...++++.+.. +.+...+..+...+...|++++|+..++++.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665542 223455555666666666666666666666653
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=1.2e-06 Score=84.23 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=110.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVK 175 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 175 (658)
.|...+.++...|++++|...+.+.++. ...+ ........+|..+..+|.+.|++++|...|++..+.
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~--------~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 105 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEA--------HANN----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHT----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHc----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4555567778888999998888877652 1100 001112356777888888889999999888887653
Q ss_pred ----CCcc-CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 176 ----GHSV-SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYV----E-NVNTFNLVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 176 ----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
|-.. ...+++.+...|.. |++++|+..|++.+..... . ...+++.+...+.+.|++++|+..|++..+.
T Consensus 106 ~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 106 YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2111 23567777777777 8888888888887753110 0 1456777777888888888888888877653
Q ss_pred ----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 006154 246 ----GIWPN-VVCFNMIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 246 ----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 277 (658)
+..+. ..++..+..++...|++++|...|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 125555666666778888888888774
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=2.1e-05 Score=74.74 Aligned_cols=185 Identities=9% Similarity=-0.018 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 006154 446 AAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG--NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS-LDAAKSLL 522 (658)
Q Consensus 446 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~ 522 (658)
++++.+++.+.....+ +..+|+.-...+.+.+ .+++++.+++++.+.... |...|+.-...+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4445555555443222 4444444444444444 245555555555554332 44444444444444454 35555555
Q ss_pred HHHHHcCCCCHhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-------
Q 006154 523 QASQRIGLLDAITYNTLINGYFIN--------------GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF------- 581 (658)
Q Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------- 581 (658)
+.+.+..+.|..+|+.....+... +.++++++.+++..... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence 555555555555555555444443 33555666666655532 33444554444444333
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 582 ----GCYQQARELMKVMILHGIIPDYVTYTTLVT-----RFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 582 ----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++.+ +.|..
T Consensus 248 ~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r 308 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGG
T ss_pred hHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcch
Confidence 3467777777777764 4443 2322111 12235667777778888776 45544
No 136
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2e-06 Score=69.57 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|...++++....+.+..++..++..+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444444444433344444444444444444444444444444321 22333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=4.1e-07 Score=76.58 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=76.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006154 486 VYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIA 565 (658)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 565 (658)
.++++.+.. +.+...+..+...+...|++++|...|+.+....+.+...|..+..+|...|++++|+..|+++.... +
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444431 11344556666777777777777777777777777777777777777777777777777777777643 3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
.+...+..+..++...|++++|++.|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777654
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=2e-06 Score=70.28 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+...|++++|...++++....+.+...+..++..+...|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 333333444444444444444444333344444444444444444444444444443321 1223333444444444444
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|.+.+++..+
T Consensus 96 ~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 96 HVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=2e-06 Score=70.59 Aligned_cols=122 Identities=12% Similarity=0.006 Sum_probs=95.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
..+.++..+..+...+.+.|++++|.+.|++..+... .+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 4566778888999999999999999999999988643 367888888888999999999999999988764 34677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVG 265 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 265 (658)
.+...+.+.|++++|.+.|++..+.... +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 8888888999999999999988775322 3445556666555444
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=2.2e-06 Score=70.31 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+...|++++|+..+++..+... .+...+..+...+...|++++|...++++.+..+.+...+..++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444455555555555555444321 134444444444445555555555555554444444444555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRN 561 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~ 561 (658)
..|++++|...+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554444
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=2.5e-06 Score=78.66 Aligned_cols=187 Identities=9% Similarity=-0.078 Sum_probs=129.0
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCCcC---------------
Q 006154 158 QIGATEGAYDVIQKLKVKGHSVSIHAWNNF-------LSHLVKLNEIGRFWKLYKEMVSCGYVEN--------------- 215 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~g~~~~--------------- 215 (658)
..++...|.+.|.++.+..+. ....|+.+ ...+.+.++..++...++.-+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 579999999999999987544 67788877 5666666666666666665554 1121
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC
Q 006154 216 -------VNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN 288 (658)
Q Consensus 216 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 288 (658)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+. ..... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~---a~~~~-d~~ 168 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKS---AGKWP-DKF 168 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTT---GGGCS-CHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHH---hhccC-Ccc
Confidence 2234445667778889999999888877653 4433555666678888888888888876 33221 111
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 006154 289 --SVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCN--VRTYATLIDGYARGGSSEEALRLCDEMVKR 353 (658)
Q Consensus 289 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 353 (658)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23567777888888888888888888874332143 335556667777888888888888888776
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=3.8e-06 Score=67.88 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3445555566666666666666666666542 224556666666666677777777777776666666666667777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLC 579 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 579 (658)
...|++++|...++++.+.. +.+...+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 77777777777777766642 223444444444443
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=4.6e-07 Score=76.26 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+...|++++|+..|++..+..+ .+...+..+..++...|++++|...++++....+.++..+..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33344445555555555555555544322 24444445555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 547 GKIAEAFAMFSEMRN 561 (658)
Q Consensus 547 g~~~~A~~~~~~~~~ 561 (658)
|++++|...|++..+
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=6e-07 Score=78.38 Aligned_cols=119 Identities=12% Similarity=0.188 Sum_probs=59.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING-LCKDASL--DA 517 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 517 (658)
..|++++|...+++...... .+...+..+...|...|++++|+..|+++.+... .+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 34455555555555544321 2444555555555555555555555555554322 134444444444 4455555 55
Q ss_pred HHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 518 AKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 518 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
|...++++.+..+.+...+..++..|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=6.1e-07 Score=84.93 Aligned_cols=193 Identities=13% Similarity=-0.028 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+.+.|++++|...|++.+.... .+...+..+...+.+.|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34455555566666666666666666655422 2455566666666666666666666666665422 245566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+...|++++|...++++.+..+.+...+...+....+. .++.. +........+++......+... ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 66666777776666666655443222222122111111 11111 1122222234444443333322 256777777
Q ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHHhC-CChHHHHHHHHHHHH
Q 006154 589 ELMKVMILHGIIPDYVTY-TTLVTRFSKN-CSPEEVIELHDDMVL 631 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~m~~ 631 (658)
+.++++.+. .|+.... ..+...+.+. +.+++|.++|.++.+
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777766653 4443332 3333333333 556777777776654
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=1.6e-06 Score=70.68 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 503 NSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 503 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+...+.+.|++++|...|+++.+..|.+..+|..+..+|...|++++|+..+++.++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555555555555555544444455555555555555555555555554443
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=4.3e-05 Score=72.66 Aligned_cols=193 Identities=9% Similarity=-0.042 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHH
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSN--NLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGN-IEGAVQV 486 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 486 (658)
+++++.+++.++..+++ +..+|+.-...+.+.+ .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 34555566666555444 5555555555555555 356666666666665332 55555555555555555 4666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc------
Q 006154 487 YENMKKVEKKPNLVIYNSIINGLCKD--------------ASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN------ 546 (658)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 546 (658)
++++++..+. |...|+.....+... +.++++.+.+..+....|.|..+|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 6666665433 455554444444333 4577888888888888888888888666655555
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 006154 547 -----GKIAEAFAMFSEMRNVGIAVNKVGYNILIN-----FLCKFGCYQQARELMKVMILHGIIPDYV-TYTTLV 610 (658)
Q Consensus 547 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~ 610 (658)
+.++++++.++++.+. .|+. .|..+.- +....|..+++...+.++++. .|-.. -|.-+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~ 316 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR 316 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHH
Confidence 4578999999999884 4554 3432222 222457788899999999874 45433 344433
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=1.3e-06 Score=71.18 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=90.2
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG--IIPD----YVT 605 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~ 605 (658)
...++..++..+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34577889999999999999999999999864 4457889999999999999999999999998642 1111 246
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006154 606 YTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAI 644 (658)
Q Consensus 606 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 644 (658)
|..+..++...|++++|++.|++.++ ..||..+...|
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77788889999999999999999987 46777665544
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=2.7e-06 Score=69.43 Aligned_cols=118 Identities=17% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++......+.+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3445556666667777777777777766642 225566667777777777777777777777777666777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777777777776643 2345566666666666554
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.8e-06 Score=82.73 Aligned_cols=129 Identities=13% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--------------LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
.+..+...+.+.|++++|+..|++..+...... ...+..+..++.+.|++++|...++++.+..+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444555555555555555555554322211 356677777777777777777777777777777
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQA-RELMKVMI 595 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 595 (658)
+..+|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888888888887777743 33456677777777777777777 44555554
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=5.2e-06 Score=74.06 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCc-
Q 006154 145 TPAVFDALVRACTQIGATEGAYDVIQKLKVK----GH-SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSC----GYVE- 214 (658)
Q Consensus 145 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~~- 214 (658)
...++..+...+...|++++|...+++..+. +. .....++..+...+...|++++|...+++..+. +-.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4455666666666666666666666665541 11 112344555555555666666666555555432 1011
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 215 -NVNTFNLVIYALCKECKLEEALSLYYRML 243 (658)
Q Consensus 215 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 243 (658)
....+..+...+...|++++|...+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12334445555555555555555555544
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=2.7e-06 Score=82.80 Aligned_cols=151 Identities=11% Similarity=-0.045 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HhhHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLD---------------AITYNTLING 542 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~ 542 (658)
+++++|+..++...+.. +-+...+..+...+.+.|++++|...|+++....+.+ ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444333211 1145677888899999999999999999999998876 6899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEV 622 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 622 (658)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+...+.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864 4468889999999999999999999999999863 33577888888899999999988
Q ss_pred -HHHHHHHHH
Q 006154 623 -IELHDDMVL 631 (658)
Q Consensus 623 -~~~~~~m~~ 631 (658)
...+++|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 556777754
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4e-06 Score=68.18 Aligned_cols=94 Identities=12% Similarity=-0.079 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
+..+...+...|++++|...+++..+..+.+...|..++.+|...|++++|+..+++..+.. +.+...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555432 22344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|++.+++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=6.9e-07 Score=74.66 Aligned_cols=98 Identities=13% Similarity=-0.062 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
...+..+...+...|++++|...|+.+....|.+...|..+..+|...|++++|+..|++..... +.+...+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34555666777788888888888888888888788888888888888888888888888887753 34566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006154 579 CKFGCYQQARELMKVMILH 597 (658)
Q Consensus 579 ~~~g~~~~A~~~~~~~~~~ 597 (658)
...|++++|++.+++.++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888887764
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=1.3e-05 Score=63.82 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+...|++++|...++.+....+.+...+..++..+...|++++|...+++..+.. +.+...+..++.++...|+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444443344444444444444444444444444444321 1123333444444444444
Q ss_pred HHHHHHHHHHHH
Q 006154 584 YQQARELMKVMI 595 (658)
Q Consensus 584 ~~~A~~~~~~~~ 595 (658)
+++|.+.+++..
T Consensus 88 ~~~A~~~~~~~~ 99 (118)
T 1elw_A 88 FEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.5e-06 Score=66.19 Aligned_cols=97 Identities=15% Similarity=0.038 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++++.+..+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556667777888888888888888887633 367788888888888888888988888888888888888888888999
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 006154 545 INGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~~ 562 (658)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999988888773
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=6.1e-06 Score=68.77 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHH
Q 006154 465 ITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYF 544 (658)
Q Consensus 465 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (658)
..+..+...+.+.|++++|+..|++..+..+ .+...|..+..++...|++++|...++++....+.++..+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444455566677777777777777766532 256666667777777777777777777777777667777777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 006154 545 INGKIAEAFAMFSEMRN 561 (658)
Q Consensus 545 ~~g~~~~A~~~~~~~~~ 561 (658)
..|++++|...|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777665
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.7e-05 Score=63.20 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.+...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566667777788888888887777653 235667777777788888888888888888887777778888888888
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 006154 544 FINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (658)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8888888888888888775
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=7.4e-06 Score=72.85 Aligned_cols=95 Identities=14% Similarity=-0.021 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRF 613 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 613 (658)
.+|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455556666666666666666666665542 2345555566666666666666666666665542 22344455555555
Q ss_pred HhCCChHHHH-HHHHHHH
Q 006154 614 SKNCSPEEVI-ELHDDMV 630 (658)
Q Consensus 614 ~~~g~~~~A~-~~~~~m~ 630 (658)
...++.+++. ..+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555544444 3344443
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.1e-05 Score=71.84 Aligned_cols=130 Identities=12% Similarity=-0.019 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006154 466 TYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN---------------LVIYNSIINGLCKDASLDAAKSLLQASQRIGL 530 (658)
Q Consensus 466 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 530 (658)
.+..+...+...|++++|+..|++..+...... ...+..+..++...|++++|...++.+.+..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344455556666666666666666665322111 26677778888888888888888888888887
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 006154 531 LDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR-ELMKVMIL 596 (658)
Q Consensus 531 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 596 (658)
.+..++..++.+|...|++++|...|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888888888899999988888887753 335666777777777777666665 44444443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.3e-05 Score=66.11 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF 577 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 577 (658)
+...+..+...+...|++++|...++.+....+.+...|..++.++...|++++|...+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 445555556666666666666666666666655566666666666666666666666666665542 2245555666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006154 578 LCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~ 596 (658)
+...|++++|+..++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=6.4e-06 Score=67.19 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----hHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI--AVN----KVGYNILI 575 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~l~ 575 (658)
+..+...+...|++++|...++++....+.+...+..++..+...|++++|...++++.+... .++ ..++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344444444555555555555555554444455555555555555555555555555544210 111 33444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006154 576 NFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=6.6e-06 Score=64.93 Aligned_cols=98 Identities=10% Similarity=0.010 Sum_probs=50.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIP--DYVTYTTL 609 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 609 (658)
+...+..++..+...|++++|...++++.+.. +.+...+..+..++...|++++|++.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34444455555555555555555555554432 2234445555555555555555555555555431 11 34455555
Q ss_pred HHHHHhC-CChHHHHHHHHHHHH
Q 006154 610 VTRFSKN-CSPEEVIELHDDMVL 631 (658)
Q Consensus 610 ~~~~~~~-g~~~~A~~~~~~m~~ 631 (658)
...+.+. |++++|.+.+++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 5555555 555555555555554
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=1.4e-05 Score=68.52 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 006154 499 LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFL 578 (658)
Q Consensus 499 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 578 (658)
...+..+...+...|++++|...|+++.+..+.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33445555555566666666666666666655566666666666666666666666666665542 22355555666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006154 579 CKFGCYQQARELMKVMILH 597 (658)
Q Consensus 579 ~~~g~~~~A~~~~~~~~~~ 597 (658)
...|++++|++.|++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=7.2e-06 Score=66.86 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=94.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGI--IPD----YVTY 606 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 606 (658)
...+..++..+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4577888999999999999999999998864 45678889999999999999999999999987521 122 6778
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 607 TTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 607 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
..+...+...|++++|.+.++++.+. .|+......+.....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 88899999999999999999999984 567766666655443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=7.4e-06 Score=64.64 Aligned_cols=100 Identities=15% Similarity=0.001 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCc--CHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVE--NVNTFNL 221 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~ 221 (658)
.+..++..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 3455667777778888888888888888777643 256677777777777788888888887777653 23 4666777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhC
Q 006154 222 VIYALCKE-CKLEEALSLYYRMLKS 245 (658)
Q Consensus 222 l~~~~~~~-g~~~~A~~~~~~m~~~ 245 (658)
+...+.+. |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 77777777 7777777777777765
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=7.1e-06 Score=66.06 Aligned_cols=92 Identities=14% Similarity=-0.057 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 006154 504 SIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC 583 (658)
Q Consensus 504 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 583 (658)
.+...+.+.|++++|...++++.+..|.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334444555555555555555555555555555555555555555555555555555532 2234445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL 596 (658)
Q Consensus 584 ~~~A~~~~~~~~~ 596 (658)
+++|+..++++++
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555553
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=4.7e-05 Score=62.69 Aligned_cols=100 Identities=12% Similarity=-0.030 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 462 PDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 462 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
.+...+..+...+...|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+..+.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3566777778888888888888888888877643 357778888888888889999999998888888888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 006154 542 GYFINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 542 ~~~~~g~~~~A~~~~~~~~~~ 562 (658)
+|...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998888763
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.6e-05 Score=63.63 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTL 539 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 539 (658)
...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+++..+..+.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444445555555555555555555543 222 33444444444455555555555555544444444444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 006154 540 INGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.3e-05 Score=63.82 Aligned_cols=96 Identities=13% Similarity=-0.069 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLD---AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILIN 576 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 576 (658)
..+..+...+...|++++|...+++..+..+.+ ...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 344444444444555555555555544444432 4444444444444444444444444444421 122334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006154 577 FLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~ 596 (658)
++...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444443
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.3e-05 Score=64.54 Aligned_cols=95 Identities=13% Similarity=-0.052 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFIN 546 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (658)
+..+...+.+.|++++|+..+++..+..+ .+...+..+..++...|++++|...++++.+..|.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455667788888888888888887633 36777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHC
Q 006154 547 GKIAEAFAMFSEMRNV 562 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~ 562 (658)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999988888764
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=3e-05 Score=66.40 Aligned_cols=98 Identities=7% Similarity=-0.008 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++++.+..+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44566667777778888888888887777533 26677777888888888888888888888888777888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 006154 544 FINGKIAEAFAMFSEMRNV 562 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~ 562 (658)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888888764
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.00014 Score=73.63 Aligned_cols=196 Identities=8% Similarity=-0.078 Sum_probs=102.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 006154 401 TKGLCRNGCVKQAFKLHNQVLEEHMVGDA----------------YSYNILINYLCKSNNLAAAKQLLSSMIVRG-LIPD 463 (658)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~ 463 (658)
...+.+.|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888776443211 124556666777777777776666654421 1111
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---
Q 006154 464 II----TYGTLIDGYCKGGNIEGAVQVYENMKK----VEKKP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL--- 531 (658)
Q Consensus 464 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 531 (658)
.. ..+.+...+...|+++.|..++..... .+..+ -..++..+...+...|++++|..+++.+......
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111222222334666666666655542 11111 1334555666666666666666666655432111
Q ss_pred ---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 ---DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAVN--KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
...++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2345555666666666666666666555431 11111 12344445555556666666666555543
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.00011 Score=74.29 Aligned_cols=196 Identities=13% Similarity=-0.035 Sum_probs=145.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC
Q 006154 366 IHWLFAEGDVEGALFVLSDMIDKHICPDH----------------FTYSILTKGLCRNGCVKQAFKLHNQVLEEHMV-GD 428 (658)
Q Consensus 366 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 428 (658)
...+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999986433221 23678899999999999999999988764211 12
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C--
Q 006154 429 A----YSYNILINYLCKSNNLAAAKQLLSSMIVR----GLIPD-IITYGTLIDGYCKGGNIEGAVQVYENMKKVE--K-- 495 (658)
Q Consensus 429 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-- 495 (658)
. .+.+.+...+...|+.+.|..++...... +..+. ..++..+...+...|++++|..+++++...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333444455678999999999887642 22223 4567788999999999999999999876531 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 496 KP-NLVIYNSIINGLCKDASLDAAKSLLQASQRIGL----L---DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 496 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+ ...++..++..|...|++++|..++++...... + -...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 245788889999999999999999998765422 1 235667777888889999999999988876
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.5e-05 Score=67.75 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL------DAITYNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-NKVG 570 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 570 (658)
+..+...+...|++++|...+++..+.... ...++..+...+...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444432211 1235666666677777777777777666441 1001 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 571 YNILINFLCKFGCYQQARELMKVMILH----GIIP-DYVTYTTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 571 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677777777777777777776642 1111 133456666677778888888888777665
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=0.00011 Score=59.62 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=39.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDA---ITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVN---KVGYNILINFLCKF 581 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 581 (658)
.+...|++++|...++.+.+..+.+. ..+..++.++...|++++|...++++.+.. +.+ ...+..+..++...
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHc
Confidence 34444444444444444444444332 344444444445555555555554444421 111 23344444444455
Q ss_pred CCHHHHHHHHHHHHH
Q 006154 582 GCYQQARELMKVMIL 596 (658)
Q Consensus 582 g~~~~A~~~~~~~~~ 596 (658)
|++++|+..++++..
T Consensus 90 g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 90 GKNTEAQQTLQQVAT 104 (129)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555544444
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.2e-05 Score=66.77 Aligned_cols=130 Identities=16% Similarity=0.122 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHhh
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVEKK-PN----LVIYNSIINGLCKDASLDAAKSLLQASQRIGLL------DAIT 535 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~ 535 (658)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++....... ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555544432100 01 124555555666666666666666665443211 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNV----GIAV-NKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777788888888888888777542 1111 134567778888888888888888888764
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=4e-05 Score=65.38 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=43.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|++.+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45566666777777777777777777776643 334566666777777777777777777776664
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=7.9e-05 Score=60.50 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006154 97 SCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKG 176 (658)
Q Consensus 97 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 176 (658)
+..++..+...|++++|...++.+++. .+..+..+.++..+..++.+.|++++|...|+++.+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL---------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344455555555555555555555441 01111111445555555555555555555555555543
Q ss_pred CccC--HHhHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006154 177 HSVS--IHAWNNFLSHLVKLNEIGRFWKLYKEMVSC 210 (658)
Q Consensus 177 ~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 210 (658)
+... +.++..+..++.+.|++++|...|+++++.
T Consensus 70 p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 70 PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2210 344445555555555555555555555543
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.3e-05 Score=82.11 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHH
Q 006154 474 YCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAF 553 (658)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 553 (658)
+.+.|++++|++.|++..+... .+...+..+..++.+.|++++|...++++.+..+.+..+|..+..+|...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3344555555555555544321 134444455555555555555555555555554444555555555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006154 554 AMFSEMRNVGIAVNKVGYNILINF--LCKFGCYQQARELMK 592 (658)
Q Consensus 554 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 592 (658)
+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554421 1122233333333 444444444444443
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=4.1e-05 Score=77.94 Aligned_cols=132 Identities=13% Similarity=0.023 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPN--------------LVIYNSIINGLCKDASLDAAKSLLQASQRI 528 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 528 (658)
....+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777888888899999988888887432211 456666777777777777777777777777
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARE-LMKVMI 595 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 595 (658)
.+.+..+|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++|.+ .++.|.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76677777777777777777777777777777642 2234556666666666666665543 334443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=6e-05 Score=76.71 Aligned_cols=133 Identities=10% Similarity=-0.041 Sum_probs=101.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006154 428 DAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPD--------------IITYGTLIDGYCKGGNIEGAVQVYENMKKV 493 (658)
Q Consensus 428 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 493 (658)
....+..+...+.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455777888888899999999999988887532211 577788888888999999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 006154 494 EKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFA-MFSEMRN 561 (658)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 561 (658)
.. .+...+..+..+|...|++++|...|+++.+..+.+..++..+..++.+.++.+++.+ .+..|..
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 3677888888899999999999999999998888888888888888888888877753 4444443
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=0.00029 Score=73.41 Aligned_cols=173 Identities=9% Similarity=0.032 Sum_probs=129.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcC-
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS----------LDAAKSLLQASQRIGLLDAITYNTLINGYFING- 547 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 547 (658)
..++|++.++++.+..+. +..+|+.-...+...|+ ++++.+.++.+.+..+.+..+|+.-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345678888888775433 45556555555555555 888888888888888888888888888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---------
Q 006154 548 -KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG-CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN--------- 616 (658)
Q Consensus 548 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------- 616 (658)
+++++++.++++.+.+ +-|...|+....++.+.| .++++++.++++++... -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 6788999999888865 447788888888888888 88888888888887643 3666777666665542
Q ss_pred -----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCCCc
Q 006154 617 -----CSPEEVIELHDDMVLSGVSP-DNQTYNAIISPLLGEKSAED 656 (658)
Q Consensus 617 -----g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 656 (658)
+.++++++.++++... .| |...|..+-..+...++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5578899999888874 44 55788888888888777554
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=1.4e-05 Score=81.69 Aligned_cols=126 Identities=14% Similarity=0.024 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006154 433 NILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKD 512 (658)
Q Consensus 433 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 512 (658)
..+...+.+.|++++|.+.+++..+... .+...+..+..+|.+.|++++|++.+++..+... .+...+..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3344567788999999999999988632 3688899999999999999999999999998743 3678889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLING--YFINGKIAEAFAMFSEMR 560 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 560 (658)
|++++|.+.++++.+..+.+...+..+..+ +.+.|++++|++.+++..
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999988877777777777 888899999999887643
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=8e-05 Score=63.51 Aligned_cols=100 Identities=9% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKV--------E---------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIG 529 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 529 (658)
+......+.+.|++++|+..|.+..+. . .+.+...|..+..++.+.|++++|...++.+.+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334444555555555555555555442 0 01134577888888999999999999999999998
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCh
Q 006154 530 LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNK 568 (658)
Q Consensus 530 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 568 (658)
+.+..+|..++.+|...|++++|...|++..+. .|+.
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 889999999999999999999999999999885 4553
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.1e-05 Score=64.53 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006154 478 GNIEGAVQVYENMKKVE--KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAM 555 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 555 (658)
|++++|+..|++..+.+ .+.+...+..+...+...|++++|...++++.+..|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444555555444432 0112233444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHH
Q 006154 556 FSEMRN 561 (658)
Q Consensus 556 ~~~~~~ 561 (658)
+++...
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=6.1e-05 Score=74.08 Aligned_cols=140 Identities=11% Similarity=-0.032 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+.+.|++++|+..|++..+.- +.. ..... .+......+.+..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777766520 000 00000 0111112222566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 006154 544 FINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
.+.|++++|+..++++++.. +.+...+..+..+|...|++++|++.++++.+.. +.+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777753 3346667777777777777777777777777642 224555555655666556555554
Q ss_pred H
Q 006154 624 E 624 (658)
Q Consensus 624 ~ 624 (658)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=6.5e-05 Score=73.84 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006154 429 AYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING 508 (658)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 508 (658)
...+..+...+.+.|++++|...|++.++.- +.. ......+ ...+. .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHH-HHHHHHHHHHHHHH
Confidence 5568888999999999999999999887630 000 0001111 11111 01134566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
+.+.|++++|...++++.+..+.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887777777788888888888888888888888877743 234556666666666666666554
Q ss_pred H
Q 006154 589 E 589 (658)
Q Consensus 589 ~ 589 (658)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.96 E-value=1.8e-05 Score=63.16 Aligned_cols=85 Identities=18% Similarity=0.059 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHHHHHcC---CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 512 DASLDAAKSLLQASQRIG---LLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.|++++|...++++.+.+ +.+..++..++.+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777764 3366677777777777777777777777777653 334666677777777777777777
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=0.00012 Score=60.63 Aligned_cols=62 Identities=11% Similarity=-0.069 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-hHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNV-----GIAVN-KVGY----NILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555555555555555555555442 01233 3344 5555555555555555555555553
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=0.00012 Score=60.76 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 006154 570 GYNILINFLCKFGCYQQARELMKVMILH-----GIIPD-YVTY----TTLVTRFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 570 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 631 (658)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6667777777777777777777777663 11444 3355 6666677777777777777777665
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00061 Score=70.95 Aligned_cols=172 Identities=8% Similarity=-0.037 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 006154 410 VKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNN----------LAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG- 478 (658)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 478 (658)
.++|++.++++++.++. +..+|+.--..+...|+ ++++++.++.+.+...+ +...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35677888888777655 55666666666666555 78888888888876443 6667777777777777
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHc----------
Q 006154 479 -NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDA-SLDAAKSLLQASQRIGLLDAITYNTLINGYFIN---------- 546 (658)
Q Consensus 479 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 546 (658)
+++++++.++++.+.... +...|+.-...+.+.| .++++.+.++++.+..+.+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888886544 6777777777777777 788888888888888888888888877777663
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHH
Q 006154 547 ----GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQ 585 (658)
Q Consensus 547 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 585 (658)
+.++++++.++++.... +-|...|..+...+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45688888888887753 446777877777777766633
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00046 Score=56.74 Aligned_cols=109 Identities=12% Similarity=0.005 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH----cCCHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFI----NGKIAEAFA 554 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 554 (658)
++++|++.|++..+.+. |+.. +...|...+.+++|.+.|++..+.+ ++.++..|...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34455555555554431 1111 3333444444444555555444442 44444444444444 444444444
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 006154 555 MFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQARELMKVMILH 597 (658)
Q Consensus 555 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 597 (658)
.|++..+.| +...+..|...|.. .+++++|.+.+++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 444444432 33334444444444 44444444444444443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00065 Score=55.84 Aligned_cols=111 Identities=11% Similarity=-0.009 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCCHHHHH
Q 006154 513 ASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCK----FGCYQQAR 588 (658)
Q Consensus 513 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 588 (658)
+++++|...|++..+.+..... |...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4567777777777777643333 6666666677777888787777754 56666777777776 67778888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSK----NCSPEEVIELHDDMVLSG 633 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 633 (658)
+.|++..+.| +...+..+...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888777764 45666667777776 677788888887777765
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=4.7e-05 Score=74.02 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-
Q 006154 535 TYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPD-YVTYTTLVTR- 612 (658)
Q Consensus 535 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~- 612 (658)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++. .|+ ...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 44555555555555555555555555532 223445555555555555555555555555432 222 2223333222
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 006154 613 FSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~ 631 (658)
....+..+++...|++|..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 2223445555555555554
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=5e-05 Score=73.83 Aligned_cols=132 Identities=15% Similarity=-0.015 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 463 DIITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLV------------------IYNSIINGLCKDASLDAAKSLLQA 524 (658)
Q Consensus 463 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~a~~~~~~ 524 (658)
....+..+...+.+.|++++|+..|++..+. .|+.. .|..+..++.+.|++++|...+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456677778888999999999999998875 34433 788888999999999999999999
Q ss_pred HHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006154 525 SQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF-LCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~ 597 (658)
+.+..+.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+++...|++|...
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999988899999999999999999999999999998753 2234555555555 33456778888888888764
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=3.4e-05 Score=60.69 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|+..+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=8.7e-05 Score=61.40 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 006154 512 DASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKI----------AEAFAMFSEMRNVGIAVNKVGYNILINFLCKF 581 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 581 (658)
.+.+++|.+.++...+..|.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666665555443 46666666666632 22345566666666654
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006154 582 -----------GCYQQARELMKVMILHGIIPDYVTYTTL 609 (658)
Q Consensus 582 -----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l 609 (658)
|++++|++.|+++++. .|+...|...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a 130 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS 130 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3677777777777763 5655444433
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00026 Score=71.83 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=44.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC---CHhhH
Q 006154 472 DGYCKGGNIEGAVQVYENMKKV---EKKPN----LVIYNSIINGLCKDASLDAAKSLLQASQR-----IGLL---DAITY 536 (658)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~~~~ 536 (658)
..+...|++++|+.++++..+. -..|+ ..+++.|...|...|++++|..+++++.. .|+. ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455667777777776665532 11111 23455555555566666666655555432 1222 23344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006154 537 NTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 537 ~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
+.|+..|...|++++|+.++++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555555544
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00026 Score=55.42 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=40.7
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
...+..++..+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666666666677777777776666642 234556666666666667777777766666653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00015 Score=57.50 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 517 AAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 517 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
+|...++++.+..+.+...+..++..|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666542 23455566666666666666666666666654
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.70 E-value=0.00012 Score=60.55 Aligned_cols=97 Identities=13% Similarity=-0.027 Sum_probs=72.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHH
Q 006154 476 KGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDAS----------LDAAKSLLQASQRIGLLDAITYNTLINGYFI 545 (658)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (658)
+.+.+++|++.++...+..+. +...|..+..++...++ +++|...|+++.+..|.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 445566677777666665332 55666666666665554 5699999999999999999999999999988
Q ss_pred cC-----------CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 006154 546 NG-----------KIAEAFAMFSEMRNVGIAVNKVGYNILI 575 (658)
Q Consensus 546 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 575 (658)
.| ++++|++.|++.++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 74 89999999999998 467766554433
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00042 Score=70.33 Aligned_cols=133 Identities=8% Similarity=-0.064 Sum_probs=85.2
Q ss_pred HHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC
Q 006154 102 HLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKV-----KG 176 (658)
Q Consensus 102 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g 176 (658)
..+...|++++|+.++++.++. .+..+. +..|....+++.|+.+|...|++++|..++++.++ .|
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~--------~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEK--------QEPVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH--------HTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHH--------HHHhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3456789999999999887752 111111 12333456788889999999999999998888765 22
Q ss_pred C--ccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 177 H--SVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVS-----CGY-VEN-VNTFNLVIYALCKECKLEEALSLYYRMLK 244 (658)
Q Consensus 177 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 244 (658)
. +....+++.|...|...|++++|..++++.++ .|. .|+ ..+.+.+-.++...+.+++|..+|.++.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22345677777777777887777777777663 221 122 23344455555566667777777766653
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00033 Score=55.46 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|+..|++..+... .+...+..+...+...|++++|...++++....+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677777776533 36777888888888888888888888888888888888888888888889999999988888876
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00062 Score=50.88 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+...+...|++++|...+++..+..+.+...+..+..++...|++++|...+++..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333333444444444444444433333333444444444444444444444444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.0014 Score=48.94 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHH
Q 006154 464 IITYGTLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGY 543 (658)
Q Consensus 464 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (658)
...+..+...+...|++++|+..+++..+... .+...+..+...+...|++++|...+++..+..+.+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555566666777777777777777766532 25566667777777777777777777777777766777777666666
Q ss_pred HHc
Q 006154 544 FIN 546 (658)
Q Consensus 544 ~~~ 546 (658)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0034 Score=59.89 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006154 565 AVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYN 642 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 642 (658)
+.+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3445556655555555666666666666666653 5655555556666666666666666666665 455555543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.0012 Score=50.57 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=37.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
++..+..++..|...|++++|+..|+++.+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666666666665542 22344555666666666666666666665553
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.25 E-value=0.0018 Score=49.54 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 498 NLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 498 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
+...+..+...+...|++++|...|+++.+..+.+..+|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667778888888888888888888888888888888888888888888998888888888765
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.007 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006154 529 GLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYT 607 (658)
Q Consensus 529 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 607 (658)
++.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 34488889888888888899999999999999864 78888888899999999999999999999885 67776654
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.89 E-value=7e-07 Score=86.08 Aligned_cols=205 Identities=15% Similarity=0.105 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006154 144 ATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVI 223 (658)
Q Consensus 144 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 223 (658)
..+.+|..|..++.+.|++.+|++.|-+. -|+..|..++.+..+.|.+++-+..+...++.. .+...=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 45678999999999999998887766432 267788899999999999999999888877653 3445567888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCC-------------------
Q 006154 224 YALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDS------------------- 284 (658)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------------- 284 (658)
-+|++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+ ....
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i---sN~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---CCCTTTSSSSSSCSGGGSSTTTT
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876644332 2 367777788888888889888888887763 1110
Q ss_pred -cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHH
Q 006154 285 -VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYN 363 (658)
Q Consensus 285 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 363 (658)
-.-++.||..+-.+|...+.+.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-.... ......|+
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFT 267 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 267 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHH
Confidence 0124556666666666666666554443333321 1112234445666666666666666654321 22445566
Q ss_pred HHHHHHHhc
Q 006154 364 STIHWLFAE 372 (658)
Q Consensus 364 ~ll~~~~~~ 372 (658)
-|.-.|++-
T Consensus 268 ELaILYsKY 276 (624)
T 3lvg_A 268 ELAILYSKF 276 (624)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHhc
Confidence 665555554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0038 Score=47.40 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 508 GLCKDASLDAAKSLLQASQRIGLLDAI-TYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 508 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.+...|++++|...++++.+..+.+.. .+..+..+|...|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334445555555555555544444444 455555555555555555555555544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0063 Score=60.61 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 534 ITYNTLINGYFINGKIAEAFAMFSEMRN-----VGI-AVN-KVGYNILINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 534 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
.+++.|+.+|...|++++|+.++++.++ .|. .|+ ..+++.|...|...|++++|+.+++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4555666666666666666666665543 120 111 34566677777777777777777766553
No 214
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.76 E-value=0.85 Score=49.32 Aligned_cols=350 Identities=11% Similarity=-0.017 Sum_probs=187.0
Q ss_pred HHHHHHHHhcCChHHH-HHH-HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH--hHHHHHHHH
Q 006154 293 NCIINGFCKLGRVEFA-EEI-RYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN--VVYNSTIHW 368 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A-~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~ 368 (658)
.++.+++...|--... ... ...+-+. .+....-.+..-+....|+.++++.+++.....+-..+. ..-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3556777777643222 111 1222222 222222233344567788989998888776542211122 222333444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHH--HHHHH
Q 006154 369 LFAEGDVEGALFVLSDMIDKHI-------CPDHFTYSILTKGLCRNGC-VKQAFKLHNQVLEEHMVGDAYSYN--ILINY 438 (658)
Q Consensus 369 ~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~ 438 (658)
....|..+++..++...+...- .+....-..+.-++...|. -+++.+.+..++..... ...... ++...
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli 499 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLC 499 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhh
Confidence 5556665677877777664321 0111222333333443443 24666666666654211 111122 33344
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCC
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLID--GYCKGGNIEGAVQVYENMKKVEKKPNLVIY--NSIINGLCKDAS 514 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 514 (658)
++-.|+.+....++..+.+. .+......+.. ++...|+.+.+..+.+.+... ..|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 55678888888888877664 23333333443 344678988888888888763 22222221 234456778899
Q ss_pred HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 006154 515 LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCY-QQARELMKV 593 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 593 (658)
.....++++.+......+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+.++..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 8888889998887644344444444445555677766777776666543 44444334444455555553 678888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHH--hCC-------ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFS--KNC-------SPEEVIELHDDMVLS-GVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~--~~g-------~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 653 (658)
+.. .+|..+-...+.++. -.| +.....+.+...... .-.++...-..+..++...|.
T Consensus 655 L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 655 LTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred Hcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 874 345554433333333 333 334444444444432 224556666677777776664
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.57 E-value=0.027 Score=42.02 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 497 PNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 497 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
.++..+..+..++...++ .++|..++++..+..+.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355566666666654333 5777777777777777777777777777777777777777777777653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0078 Score=59.93 Aligned_cols=61 Identities=10% Similarity=-0.089 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 290 VTHNCIINGFCKLGRVEFAEEIRYAMIKA-----G-IDC-NVRTYATLIDGYARGGSSEEALRLCDEM 350 (658)
Q Consensus 290 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 350 (658)
.+++.+..+|...|++++|+.++++..+. | -.| ...+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555544431 1 011 1233444444455555555555444443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.55 E-value=0.017 Score=43.21 Aligned_cols=67 Identities=13% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCHHhHHHHHHHHHcCCC---chHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006154 92 HSLESSCAIVHLLVNWRR---FDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDV 168 (658)
Q Consensus 92 ~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 168 (658)
.+++.+...+.++...++ .++|..++++.++ ..|.++.+...+...+.+.|++++|+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~------------------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ------------------LEPYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH------------------HCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345555555555543332 4556666665555 3555556666666666666666666666
Q ss_pred HHHHHhCC
Q 006154 169 IQKLKVKG 176 (658)
Q Consensus 169 ~~~~~~~g 176 (658)
|+++.+..
T Consensus 66 w~~~l~~~ 73 (93)
T 3bee_A 66 WVLLLDSN 73 (93)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhhC
Confidence 66665543
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.019 Score=57.22 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----CCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----hHHHHH
Q 006154 509 LCKDASLDAAKSLLQASQRI-----GLL---DAITYNTLINGYFINGKIAEAFAMFSEMRNV---GIAVN----KVGYNI 573 (658)
Q Consensus 509 ~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ 573 (658)
+...|++++|..++++..+. ++. ...+++.++.+|...|++++|+.++++++.. -..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666655543 111 2345666777777777777777777766431 11122 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~~~~ 596 (658)
|...|...|++++|+.+++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888887777777663
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.49 E-value=0.0074 Score=45.74 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhH
Q 006154 471 IDGYCKGGNIEGAVQVYENMKKVEKKPNLV-IYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITY 536 (658)
Q Consensus 471 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 536 (658)
...+.+.|++++|+..++++.+... .+.. .+..+..++...|++++|...++++.+..+.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455566777777777777766532 2445 666777777777777777777777777766655544
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.45 E-value=0.023 Score=46.34 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHHHHH
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFG---CYQQARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVIELH 626 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 626 (658)
+.+.|.+....+. ++..+...+..++++.+ ++++++.+++...+.. .| +...+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444433332 34444444555555544 3345555555554432 12 1223333444445555555555555
Q ss_pred HHHHH
Q 006154 627 DDMVL 631 (658)
Q Consensus 627 ~~m~~ 631 (658)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.13 Score=56.59 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=81.9
Q ss_pred HhcCCHHHHHH-HHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 006154 262 CQVGDLEFALK-LFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSS 340 (658)
Q Consensus 262 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 340 (658)
...+++++|.+ ++.. +. +......++..+.+.|..++|.++.+... .-.......|++
T Consensus 610 ~~~~~~~~a~~~~l~~---i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN---VE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHTTCHHHHHHHTGGG---CC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred HHhCCHHHHHHHHHhc---CC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34677777766 4432 11 01122566666777777777766542111 112334566777
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 341 EEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNGCVKQAFKLHNQV 420 (658)
Q Consensus 341 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (658)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7777765432 3567777788888888888888877776643 334444455566655554444444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 421 LEEHMVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
...| -++....+|.+.|++++|.+++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 3332 1233333444455555554444
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.39 E-value=0.016 Score=57.69 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccccCCcCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-Chhh
Q 006154 258 INEACQVGDLEFALKLFRKMGVMSGDSVLPN----SVTHNCIINGFCKLGRVEFAEEIRYAMIKA-----G-IDC-NVRT 326 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~ 326 (658)
+..+...|++++|+.++++.......-+.|+ ..+++.+..+|...|++++|+.+++++.+. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3344556677777777666422222222222 345666666666666666666666655432 1 011 2344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
++.|...|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666666655543
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.32 Score=38.14 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006154 540 INGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHG 598 (658)
Q Consensus 540 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 598 (658)
++.+...|+.+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444443221 23444444444444444444444444444444444
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.17 E-value=3.5e-06 Score=81.36 Aligned_cols=119 Identities=10% Similarity=0.050 Sum_probs=87.2
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006154 180 SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIIN 259 (658)
Q Consensus 180 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 259 (658)
.+..|..|..+..+.++..+|++-|-+ ..|+..|..++.+..+.|++++-++++....+..-+| ..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH
Confidence 456788899999888888887765522 2355678888999999999999999887766553333 44458999
Q ss_pred HHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 260 EACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEEIRYAMI 316 (658)
Q Consensus 260 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 316 (658)
+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~rL~elEefl~----------~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp HHHTSCSSSTTTSTTS----------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred HHHhhCcHHHHHHHHc----------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 9999998766554432 2566677778888888888888877765543
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.037 Score=50.51 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CCHHH
Q 006154 515 LDAAKSLLQASQRIGLL--DAITYNTLINGYFIN-----GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKF-GCYQQ 586 (658)
Q Consensus 515 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~ 586 (658)
...|...++++.+..+. +...|..++..|.+. |+.++|.+.|++.++....-+..++....+.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 56778888888888887 777888888888884 88888888888888843212367777778877774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHH
Q 006154 587 ARELMKVMILHGII--PDYVTYT 607 (658)
Q Consensus 587 A~~~~~~~~~~g~~--p~~~~~~ 607 (658)
|.+.+++.+..... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888876554 5544433
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.15 E-value=0.074 Score=42.71 Aligned_cols=107 Identities=7% Similarity=-0.052 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCccCH-HhHHHHHHHH------HhcCCHhHHHHHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGAT------EGAYDVIQKLKVKGHSVSI-HAWNNFLSHL------VKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~------~~~g~~~~a~~~~~~~~ 208 (658)
.|.++.+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+..+ ...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 567888888888888888998 8888999988875 34432 2222322222 23478888899998887
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006154 209 SCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPN 250 (658)
Q Consensus 209 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 250 (658)
+.+-.- ...|......-.++|++..|.+++...+..+.+|.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 653233 66777777777788999999999988888776644
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.48 Score=51.95 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 439 LCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 439 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554321 24455666666666666666666666554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.09 E-value=0.07 Score=43.53 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CC-CHhhHHHHHHHHHHcCCHHHHHHHH
Q 006154 482 GAVQVYENMKKVEKKPNLVIYNSIINGLCKDA---SLDAAKSLLQASQRIG-LL-DAITYNTLINGYFINGKIAEAFAMF 556 (658)
Q Consensus 482 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 556 (658)
.+.+.|.+..+.+. ++..+...+..++++.+ +++++..+++...+.. +. +...+..+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 33444444444333 45555555555555555 4445666666655554 31 3445555555566666666666666
Q ss_pred HHHHH
Q 006154 557 SEMRN 561 (658)
Q Consensus 557 ~~~~~ 561 (658)
+.+++
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.07 E-value=0.29 Score=38.38 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006154 500 VIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGI 564 (658)
Q Consensus 500 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 564 (658)
......++.+..+|+-+.-.++...+....+.++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444455555555555555555554444444555555555555555555555555555555553
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.71 E-value=3 Score=45.21 Aligned_cols=272 Identities=11% Similarity=0.036 Sum_probs=155.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCChhhHHHHHH
Q 006154 367 HWLFAEGDVEGALFVLSDMIDKHICPDHF--TYSILTKGLCRNGCVKQAFKLHNQVLEEHM-------VGDAYSYNILIN 437 (658)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 437 (658)
-+....|+.++++..+......+...+.. .=..+.-+....|..+++.+++...+...- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888888877665422112222 223334455566766678887777665421 011222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 006154 438 YLCKSNN-LAAAKQLLSSMIVRGLIPDIIT--YG--TLIDGYCKGGNIEGAVQVYENMKKVEKKPNLVIYNSIING--LC 510 (658)
Q Consensus 438 ~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 510 (658)
++...|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+.. +..+...+..+ +.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 3433332 245666666666531 2221 12 22333456678777777777776532 33344444444 44
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006154 511 KDASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 511 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
..|+.+.+..+.+.+.....+ ....-.++..+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 536 NYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 678999999998888875332 22233455667888899877777998888742 223333333444555677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCSP-EEVIELHDDMVLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 649 (658)
++++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-..-+-+++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 7777666543 45555444555555556654 578889999874 556655544444443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.70 E-value=0.069 Score=40.83 Aligned_cols=66 Identities=11% Similarity=-0.078 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVG------IAVNKVGYNILINFLCKFGCYQQARELMKVMILH 597 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 597 (658)
++.-+..++..+.+.|+++.|...|+++.+.- -.+....+..+..++.+.|++++|+..++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677778888888888888887776521 1234556777778888888888888888887764
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.65 E-value=0.12 Score=39.47 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 467 YGTLIDGYCKGGNIEGAVQVYENMKKVE------KKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 467 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
+..+...+.+.|+++.|...|+...+.. -.+...++..+..++.+.|+++.|...++++.+..|.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3344444555555555555555444320 0112333444444444444444444444444444443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.42 E-value=0.12 Score=47.08 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCh
Q 006154 549 IAEAFAMFSEMRNVGIAVN---KVGYNILINFLCKF-----GCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN-CSP 619 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~ 619 (658)
...|...+++.++. .|+ ...|..++..|.+. |+.++|.++|++.++.+..-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888884 566 55788999999984 99999999999999853222477888888888884 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006154 620 EEVIELHDDMVLSGVS--PDNQTYNAII 645 (658)
Q Consensus 620 ~~A~~~~~~m~~~g~~--p~~~~~~~l~ 645 (658)
++|.+.+++.++.... |+....+.+-
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999999997655 6666555443
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=1.1 Score=37.46 Aligned_cols=102 Identities=11% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006154 154 RACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLE 233 (658)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 233 (658)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888888887765 2677888888888888888888888877653 344444555667776
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 234 EALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 234 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
...++-+.....| -++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665555444332 244455556667888888888876
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.26 E-value=1.1 Score=37.46 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006154 441 KSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 441 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 490 (658)
..|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444333 13444444444444444444444444443
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.90 E-value=0.3 Score=39.26 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHH
Q 006154 478 GNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLI 540 (658)
Q Consensus 478 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 540 (658)
+++++|.++|+.+.+.+-.- ...|....+--.++|+++.|.+++......++.+...+...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 56666666666665442222 445555555555566666666666666666555554444443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.49 E-value=0.25 Score=38.68 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCChHHHH
Q 006154 549 IAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQ---ARELMKVMILHGIIP--DYVTYTTLVTRFSKNCSPEEVI 623 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 623 (658)
...+.+.|.+....| .|+..+-..+..++.+..+... ++.+++.....+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444444444433 2455555555666666655444 666666655432 12 2223333444566666666666
Q ss_pred HHHHHHHHCCCCCCH
Q 006154 624 ELHDDMVLSGVSPDN 638 (658)
Q Consensus 624 ~~~~~m~~~g~~p~~ 638 (658)
+.++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 66666666 45543
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.19 E-value=0.22 Score=38.93 Aligned_cols=83 Identities=11% Similarity=0.040 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCCHHHHH
Q 006154 514 SLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAE---AFAMFSEMRNVGIAV--NKVGYNILINFLCKFGCYQQAR 588 (658)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 588 (658)
.+..+.+-+......+..+..+-..+..++.+...... ++.++++..+.+ .| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444455555545455555566666666666655444 666666666543 12 2223334555666777777777
Q ss_pred HHHHHHHHc
Q 006154 589 ELMKVMILH 597 (658)
Q Consensus 589 ~~~~~~~~~ 597 (658)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776663
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.27 E-value=9.8 Score=37.80 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=142.3
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc
Q 006154 407 NGCVKQAFKLHNQVLEE-----HMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGY----CKG 477 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~ 477 (658)
.|+++.|++.+..+.+. +..........++..+...++++...+.+..+....-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877666543 233345667788889999999998888776665542222 22223333322 223
Q ss_pred CChHHHH--HHHHHHHh---CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHhhHHHHHHHH
Q 006154 478 GNIEGAV--QVYENMKK---VEKKP---NLVIYNSIINGLCKDASLDAAKSLLQASQRIGL--L----DAITYNTLINGY 543 (658)
Q Consensus 478 g~~~~A~--~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~ 543 (658)
...+... .+.+.... ..+-. .......|...+...|++.+|.+++..+...-. . -...+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111111 11111 122345677888889999999999988764322 1 245677778888
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHH
Q 006154 544 FINGKIAEAFAMFSEMRN----VGIAVN--KVGYNILINFLCKFGCYQQARELMKVMILH-GIIPDYVTYT----TLVTR 612 (658)
Q Consensus 544 ~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~----~l~~~ 612 (658)
...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....|...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 899999999988888742 222222 234567777888889999988888877642 1111332222 22333
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 006154 613 FSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGE 651 (658)
Q Consensus 613 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 651 (658)
..-.+...+--.++........-++...+..+++++...
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 333444444455555555444445667777787777654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.65 E-value=2.6 Score=44.70 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 006154 578 LCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM 629 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 629 (658)
|...|+++.|+++.++.+.. .+.+..+|..|..+|...|+++.|+-.++.|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455555555555555543 1223445555555555555555555555554
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.28 E-value=1 Score=47.79 Aligned_cols=49 Identities=8% Similarity=0.061 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 006154 602 DYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 602 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 652 (658)
+..-|..|.....+.+++++|.+.|+..+. ..-+...+..|++.|...+
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 444578888888899999999999999997 4689999999999998866
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.83 E-value=11 Score=35.41 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHH----HHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDV----IQK 171 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~ 171 (658)
.|.++..-+.+.+++++|..++-.-.. .+.+.|+...|-++ ++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~--------------------------------~ll~~~Q~~sg~DL~~llvev 84 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ--------------------------------TLLRSGQGGSGGDLAVLLVDT 84 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH--------------------------------HHHHCCCcchHHHHHHHHHHH
Confidence 455666777778888888776654332 23334444333333 344
Q ss_pred HHhCCCccCHHhHHHHHHHHHhcCCHh-HHHHHHHHHH----hCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006154 172 LKVKGHSVSIHAWNNFLSHLVKLNEIG-RFWKLYKEMV----SCG--YVENVNTFNLVIYALCKECKLEEALSLY 239 (658)
Q Consensus 172 ~~~~g~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 239 (658)
+.+.+.++|......++..+.....-+ .=..+.++++ +.| ..-|......+...|.+.+++.+|...|
T Consensus 85 y~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 85 FRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 455566666666666666655544211 1112222222 111 2234555566666666777766666655
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.64 E-value=9.3 Score=43.45 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 006154 325 RTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNN----VVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSIL 400 (658)
Q Consensus 325 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 400 (658)
.-|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++|...+-.+-....+ ...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34667777777888888887777666543221111 24677788888888888888877776654332 4456666
Q ss_pred HHHHHhcCChHH
Q 006154 401 TKGLCRNGCVKQ 412 (658)
Q Consensus 401 ~~~~~~~g~~~~ 412 (658)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 666776665543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.53 E-value=4.7 Score=31.67 Aligned_cols=72 Identities=8% Similarity=-0.156 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 565 AVNKVGYNILINFLCKFGCY---QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.|+..|--.+..++.+..+. .+++.+++.....+..-....+--+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45555555556666665543 35666666666543111233444455566677777777777776665 45554
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.45 E-value=2.1 Score=41.82 Aligned_cols=73 Identities=11% Similarity=0.024 Sum_probs=50.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 006154 533 AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMIL-----HGIIPDYVTY 606 (658)
Q Consensus 533 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 606 (658)
..+...++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+-
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4455566677777788888877777776643 44666777778888888888888877777653 3777766543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.42 E-value=7.6 Score=44.17 Aligned_cols=152 Identities=8% Similarity=0.010 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcC---C--CChHHHHHHHHhhccCCCCCH
Q 006154 72 KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMSAN---S--VSPLEFLEGLLDSYEICKATP 146 (658)
Q Consensus 72 ~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~~~~~ 146 (658)
+..+.|.++..|+.. ++.....++.++...|++++|...|.+....- . .....-+..+.........-+
T Consensus 826 ~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 345678888888653 44455778999999999999999998764320 0 111222333333333333344
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCH----HhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006154 147 AVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSI----HAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLV 222 (658)
Q Consensus 147 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 222 (658)
..|.-++..+-+.|.++.+.+.-....+...+.+. ..|..+...+...|++++|...+-.+.... .-......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 55666666777777777776666655543211111 135555555555566665555555544332 223344445
Q ss_pred HHHHHhcCC
Q 006154 223 IYALCKECK 231 (658)
Q Consensus 223 ~~~~~~~g~ 231 (658)
+..+|..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 554554444
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.87 E-value=1.3 Score=43.26 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCChHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRN-----VGIAVNKVGYN 572 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 572 (658)
...++..+...|+++++...+..+....|.+...|..++.++...|+..+|++.|++..+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667778899999999999999998888999999999999999999999999988743 58888877543
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.75 E-value=21 Score=37.08 Aligned_cols=394 Identities=12% Similarity=0.046 Sum_probs=198.0
Q ss_pred HHHHHhccCCchhhhhhhCCC-----CCHHHHHHHHH-hcC-CChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCC
Q 006154 37 RAICVNLRQRKWKILEQMAPS-----LTNSLVNRVVS-EFR-KSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRR 109 (658)
Q Consensus 37 ~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~vl~-~~~-~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (658)
......+++.+|.....+... |.|-.--..|. .+. .++.....| +.+.++.+.....-..-+..+.+.++
T Consensus 11 ~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~F---l~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 11 AQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 344455677777665544333 32222112222 121 134433333 33333333333333445566666666
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHH
Q 006154 110 FDDALLLMGNLMSANSVSPLEFLEGLLDSYEICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLS 189 (658)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 189 (658)
+.....++ +..|.+...-.....+....|+..+|......+...|.. .+..|..++.
T Consensus 88 w~~~l~~~----------------------~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~ 144 (618)
T 1qsa_A 88 WRGLLAFS----------------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFS 144 (618)
T ss_dssp HHHHHHHC----------------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHH
T ss_pred HHHHHHhc----------------------cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHH
Confidence 66543322 234667777777888888999988888888888877643 6777888888
Q ss_pred HHHhcCCH--hHHHHHHHHHHhCCCCcCHHHHHHHHHHH-----------Hh-cCCHHHHHHHHHHHHhCCCCCChhh--
Q 006154 190 HLVKLNEI--GRFWKLYKEMVSCGYVENVNTFNLVIYAL-----------CK-ECKLEEALSLYYRMLKSGIWPNVVC-- 253 (658)
Q Consensus 190 ~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~m~~~~~~p~~~~-- 253 (658)
.+.+.|.. +..+.=++.+...| +...-..++..+ .. ..+...+...... ..++...
T Consensus 145 ~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~ 216 (618)
T 1qsa_A 145 VWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQ 216 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHH
Confidence 88877644 33444444444443 111111111111 00 0111111111111 1122221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 006154 254 -FNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVT----HNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYA 328 (658)
Q Consensus 254 -~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 328 (658)
+...+.-+. ..+.+.|...+... .... ..+... +..+...+...+...++...+...... ..+.....
T Consensus 217 ~~~~~~~rla-r~d~~~A~~~~~~~---~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e 289 (618)
T 1qsa_A 217 MAAVAFASVA-RQDAENARLMIPSL---AQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHH---HHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhh---hhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHH
Confidence 111222222 34778898888873 2211 112222 222233333344355666666665543 33444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 006154 329 TLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG 408 (658)
Q Consensus 329 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (658)
-.+....+.|+++.|...|..|..... .......-+..++...|+.++|..+|..+... . .-|..+.. .+.|
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lAa--~~Lg 361 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVAA--QRIG 361 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHHH--HHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHHH--HHcC
Confidence 555556677999999999988865321 12333444566777889999999999888752 1 12332221 2222
Q ss_pred ChHHHHHHHHHHHHcCCCCC-h-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006154 409 CVKQAFKLHNQVLEEHMVGD-A-----YSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEG 482 (658)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 482 (658)
..-.. ....+.+. . ..-..-+..+...|....|...+..+... .+......+.......|.++.
T Consensus 362 ~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~ 431 (618)
T 1qsa_A 362 EEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL 431 (618)
T ss_dssp CCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHH
Confidence 21000 00000000 0 01112345567788888888888777654 233333344444556677776
Q ss_pred HHHHHHH
Q 006154 483 AVQVYEN 489 (658)
Q Consensus 483 A~~~~~~ 489 (658)
++.....
T Consensus 432 ~v~~~~~ 438 (618)
T 1qsa_A 432 SVQATIA 438 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.56 E-value=14 Score=34.69 Aligned_cols=81 Identities=9% Similarity=-0.082 Sum_probs=47.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVT 611 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 611 (658)
++.....+...|.+.+++.+|...|- . |-.+....|..++.-+...+...++ +...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL- 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL- 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH-
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH-
Confidence 88889999999999999999988872 2 3233345665554444433322211 222222222
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 006154 612 RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 612 ~~~~~g~~~~A~~~~~~m~~ 631 (658)
-|.-.++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34556777777776665553
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.32 E-value=7.1 Score=31.12 Aligned_cols=72 Identities=8% Similarity=-0.164 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 006154 565 AVNKVGYNILINFLCKFGC---YQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDN 638 (658)
Q Consensus 565 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 638 (658)
.|+..+--.+.+++.++.+ ..+++.+++.....+..-.....--+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555556666666654 345666666666543221233333445567777777777777777776 45544
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.10 E-value=1.6 Score=32.10 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
+.-+..+-++.+...++.|++....+.+++|.+.+++..|.++++-.+.+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455555566666666677777777777777777777777777666654 222333455444
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.89 E-value=4 Score=32.07 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 495 KKPNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
..|+..+--.+..++.+..+ ..++..+++.+.+.++. ....+-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555455555555443 33456666666555543 445555555666666666666666666666
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.70 E-value=7.7 Score=30.92 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006154 496 KPNLVIYNSIINGLCKDAS---LDAAKSLLQASQRIGLL-DAITYNTLINGYFINGKIAEAFAMFSEMRN 561 (658)
Q Consensus 496 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 561 (658)
.|+..+--.+..++.+..+ ..++..+++.+....+. .....-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555555555443 33556666666655554 444455555666666666666666666666
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.50 E-value=21 Score=35.43 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCcH--hH
Q 006154 293 NCIINGFCKLGRVEFAEEIRYAMIKAGIDCN-----VRTYATLIDGYARGGSSEEALRLCDEMVK----RGLMPNN--VV 361 (658)
Q Consensus 293 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~~--~~ 361 (658)
..|...+...|++.+|.+++..+...-...+ +..+...++.|...+++.+|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4456666677777777777777653211111 23445556667777777777776666532 2122221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMI 386 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~ 386 (658)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555556666666666655554
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.63 E-value=21 Score=34.50 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH--
Q 006154 538 TLINGYFINGKIAEAFAMFSEMRNV--GIAVN---KVGYNILINFLCKFGCYQQARELMKVMILH--GIIPDYVTYTT-- 608 (658)
Q Consensus 538 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~-- 608 (658)
.++..|...|++.+|.+++.++.+. ..... ...+..-++.|...|++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4566666666666666666666441 11101 122334455566666666666666655422 12233322211
Q ss_pred --HHHHHH-hCCChHHHHHHHHHH
Q 006154 609 --LVTRFS-KNCSPEEVIELHDDM 629 (658)
Q Consensus 609 --l~~~~~-~~g~~~~A~~~~~~m 629 (658)
-+..+. ..+++++|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112244 566666666655544
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.18 E-value=21 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=21.4
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006154 532 DAITYNTLINGYFINGKIAEAFAMFS 557 (658)
Q Consensus 532 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 557 (658)
++..+..+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 78888888888888888888877664
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.14 E-value=21 Score=33.09 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCChhhHHHHHHH
Q 006154 328 ATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFV----LSDMIDKHICPDHFTYSILTKG 403 (658)
Q Consensus 328 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~ 403 (658)
.++..-|.+.+++++|++++..--. .+.+.|+...|.++ ++-..+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444446666666666666544321 23334444433332 3333344555555555555554
Q ss_pred HHhcCChH-HHHHHHHHHHHc----C--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006154 404 LCRNGCVK-QAFKLHNQVLEE----H--MVGDAYSYNILINYLCKSNNLAAAKQLL 452 (658)
Q Consensus 404 ~~~~g~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 452 (658)
+......+ .=.++++.+++. | ...++.....+...|.+.+++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 44322111 112233333321 1 2236666777777777777777776655
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.11 E-value=8.5 Score=28.43 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 479 NIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 479 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
+.=+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344566667777777777888888888888888888888888888777665444445655543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.34 E-value=6.9 Score=32.16 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 006154 574 LINFLCKFGCYQQARELMKV 593 (658)
Q Consensus 574 l~~~~~~~g~~~~A~~~~~~ 593 (658)
+..+|.+.|++++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44455555555555555443
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.36 E-value=5.2 Score=31.32 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006154 548 KIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLV 610 (658)
Q Consensus 548 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 610 (658)
|.-+..+-++.+...++.|++......+++|.+.+++..|+++++-.+.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555556666667777777777777777777777777777776654 233344555544
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.64 E-value=25 Score=34.61 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006154 502 YNSIINGLCKDASLDAAKSLLQASQRIGLL---DAITYNTLINGYFINGKIAEAFAMFSEM 559 (658)
Q Consensus 502 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 559 (658)
...+...|.+.|+++.|.+.+.++...... -...+-..+..+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555555555555555555555443221 3334444455555555555555555544
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.21 E-value=9.3 Score=31.41 Aligned_cols=124 Identities=6% Similarity=-0.092 Sum_probs=68.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHhcCCCChHHHHHHHHhhccCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006154 96 SSCAIVHLLVNWRRFDDALLLMGNLMSANSVSPLEFLEGLLDSYEIC-KA--TPAVFDALVRACTQIGATEGAYDVIQKL 172 (658)
Q Consensus 96 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 172 (658)
++..-+..+...+.++.|+.+.+.++.. ....+.. ++ -..++..+..++...|++.+|...|++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl------------~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTL------------SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh------------hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4566677888899999998887776541 1110000 00 1235667888999999999999999997
Q ss_pred HhCC--CccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006154 173 KVKG--HSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYALCKECKLEEALSLYYRMLK 244 (658)
Q Consensus 173 ~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 244 (658)
++.. ..-+..+...+ .. ...... ......+...--.+...+.+.|++++|+.+++.+..
T Consensus 90 Lq~~k~l~k~~s~~~~~-~~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPST-GN---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCccccc-cc---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5521 11111111011 00 000000 001123344444467778889999999998887644
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.14 E-value=19 Score=28.28 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHH
Q 006154 480 IEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLIN 541 (658)
Q Consensus 480 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 541 (658)
.-+..+-++.+......|++.+..+.+.+|.+.+++..|.++++.++.+......+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34556666777777778888888888888888888888888888877765444555665543
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.78 E-value=37 Score=30.54 Aligned_cols=114 Identities=16% Similarity=0.039 Sum_probs=77.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHHhcC
Q 006154 507 NGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKV----GYNILINFLCKFG 582 (658)
Q Consensus 507 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 582 (658)
....+.|+++++......-.+..|.|...-..++..+|-.|++++|.+-++...+. .|+.. +|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~--- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ--- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH---
Confidence 34567899999999999999999999999999999999999999999999988874 34432 3333333211
Q ss_pred CHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHC
Q 006154 583 CYQQARELMKVMILHGI-----IPDYVTYTTLVTRF--SKNCSPEEVIELHDDMVLS 632 (658)
Q Consensus 583 ~~~~A~~~~~~~~~~g~-----~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 632 (658)
.=.+...-+- .....-...++.++ ...|+.++|.++-+++.+.
T Consensus 80 -------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 -------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111111111 11233444555554 3579999999998888764
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.43 E-value=25 Score=29.97 Aligned_cols=55 Identities=7% Similarity=-0.035 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 512 DASLDAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 512 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
.+...++..+|..|...++. -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34466788888888777765 67777778888888888888888888887776666
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.03 E-value=29 Score=29.60 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDY 603 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 603 (658)
.+...++..+|..|...|+.-. ..-|......+...|++.+|.++|+..++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4447788999999988776555 556788888888999999999999999988777743
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.05 E-value=27 Score=34.44 Aligned_cols=98 Identities=14% Similarity=-0.047 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHH--
Q 006154 326 TYATLIDGYARGGSSEEALRLCDEMVKR--GLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDK---HICPDHFTYS-- 398 (658)
Q Consensus 326 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~-- 398 (658)
+...+...|.+.|++++|.+.+.++... +...-...+-..+..+...+++..+...+.++... +..|+....-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455666666666666666666666543 11222334555566666666666666666555322 1111111100
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 399 ILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
.-+..+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 0111123456666666666555443
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.19 E-value=30 Score=25.45 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 231 KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 231 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
..++|..+-+-+...+. ....--+-+..+...|++++|..+.+. . ..||...|..+.. .+.|.-+++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~---~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHG---N----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTT---C----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC---C----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 44566655555554432 111111222345566777777766554 1 3566666655543 36666677766
Q ss_pred HHHHHHHcCCCCChhh
Q 006154 311 IRYAMIKAGIDCNVRT 326 (658)
Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (658)
.+.++...| .|....
T Consensus 90 rL~~la~sg-~p~~q~ 104 (115)
T 2uwj_G 90 RLAGLGGSS-DPALAD 104 (115)
T ss_dssp HHHHHHTCS-SHHHHH
T ss_pred HHHHHHhCC-CHHHHH
Confidence 666666555 443333
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.62 E-value=31 Score=25.38 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.9
Q ss_pred HHHcCCHHHHHHH
Q 006154 543 YFINGKIAEAFAM 555 (658)
Q Consensus 543 ~~~~g~~~~A~~~ 555 (658)
+.+.|++++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T 2uwj_G 49 LANQGRYQEALAF 61 (115)
T ss_dssp HHHTTCHHHHHGG
T ss_pred HHcchhHHHHHHh
Confidence 3444444444443
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.40 E-value=31 Score=25.39 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHhcCChHHHHH
Q 006154 231 KLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCKLGRVEFAEE 310 (658)
Q Consensus 231 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 310 (658)
..++|..+-+-+...+. ....--+-+..+...|++++|..+.+. . ..||...|..+.. .+.|.-+++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~---~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK---L----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT---S----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC---C----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34555555555444322 111111122334556666666666554 1 2456666655443 35566666666
Q ss_pred HHHHHHHcC
Q 006154 311 IRYAMIKAG 319 (658)
Q Consensus 311 ~~~~~~~~~ 319 (658)
.+.++...|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 555555554
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.12 E-value=22 Score=31.97 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=29.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006154 475 CKGGNIEGAVQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLL 531 (658)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 531 (658)
.+.|++++|++....-++..+ -|...-..+++.+|-.|++++|.+-++...+..+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345555555555555554422 24445555555555556666655555555555443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.71 E-value=32 Score=25.30 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=19.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMI 595 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 595 (658)
+.+.|++++|..+.+... .||...|-+|. -.+.|-.+++..-+.++-
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 444455555544433222 34444443332 234444444444443333
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.52 E-value=56 Score=27.94 Aligned_cols=79 Identities=11% Similarity=-0.057 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006154 566 VNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAII 645 (658)
Q Consensus 566 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 645 (658)
++...-...+.++.+.|+. ++...+..+.. .++..+-...+.++.+.+. .++...+.++.+ .++..+-...+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~ 195 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAV 195 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHH
Confidence 3444444444555555443 23333333332 2444444555555555554 344555555544 23455555555
Q ss_pred HHhhcCC
Q 006154 646 SPLLGEK 652 (658)
Q Consensus 646 ~~~~~~g 652 (658)
.++...+
T Consensus 196 ~aL~~~~ 202 (211)
T 3ltm_A 196 NYLETHK 202 (211)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 5554443
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.06 E-value=46 Score=31.59 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKV 174 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 174 (658)
...++.-|...|+.++|...++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 45678889999999999999998753
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.31 E-value=78 Score=30.03 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 006154 327 YATLIDGYARGGSSEEALRLCDEMV 351 (658)
Q Consensus 327 ~~~li~~~~~~g~~~~A~~~~~~~~ 351 (658)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3556666666777777777666653
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.21 E-value=53 Score=29.53 Aligned_cols=6 Identities=17% Similarity=-0.064 Sum_probs=2.5
Q ss_pred HhcCCh
Q 006154 157 TQIGAT 162 (658)
Q Consensus 157 ~~~g~~ 162 (658)
++.|+.
T Consensus 13 ~~~g~~ 18 (285)
T 1wdy_A 13 VQNEDV 18 (285)
T ss_dssp HHTTCH
T ss_pred HHcCCH
Confidence 344443
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.34 E-value=49 Score=28.75 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=9.1
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006154 258 INEACQVGDLEFALKLFRK 276 (658)
Q Consensus 258 i~~~~~~g~~~~A~~~~~~ 276 (658)
+...+..|+.+-+.-+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3444455555555444443
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.24 E-value=54 Score=26.51 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 518 AKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 518 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
+..+|..+...++. -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44444444444443 34444444444444555555555555444443333
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.98 E-value=1.1e+02 Score=29.58 Aligned_cols=93 Identities=17% Similarity=0.024 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHH-
Q 006154 329 TLIDGYARGGSSEEALRLCDEMVKRGLMPN-----NVVYNSTIHWLFAEGDVEGALFVLSDMIDK--HICPDHFTYSIL- 400 (658)
Q Consensus 329 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 400 (658)
-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467777888888888777777765311112 123444556667777777777777665432 122233222211
Q ss_pred ---HHHHH-hcCChHHHHHHHHHHH
Q 006154 401 ---TKGLC-RNGCVKQAFKLHNQVL 421 (658)
Q Consensus 401 ---~~~~~-~~g~~~~a~~~~~~~~ 421 (658)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12234 5667777766665543
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.55 E-value=63 Score=26.11 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 552 AFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
+..+|..|...|+.-. ..-|......+...|++.+|.++++..++.+-+|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5566666666555433 33455556666666666666666666666555553
No 281
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=59.79 E-value=23 Score=23.22 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=33.7
Q ss_pred hhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcc
Q 006154 49 KILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGE 86 (658)
Q Consensus 49 ~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~ 86 (658)
..|..++|.++...+..||....++.+.|...+.-+..
T Consensus 14 ~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 45778899999999999999999999999998887764
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.53 E-value=75 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 518 AKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 518 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
+..+|..|...++. -+..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44555555555554 45555555555666666666666666666555444
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.31 E-value=75 Score=27.61 Aligned_cols=83 Identities=10% Similarity=-0.002 Sum_probs=36.6
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcC
Q 006154 190 HLVKLNEIGRFWKLYKEMVSCGYVENVNT--FNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC--FNMIINEACQVG 265 (658)
Q Consensus 190 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g 265 (658)
..++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 33445555555555555444443332110 1112233344555433 333334444443221 122344445667
Q ss_pred CHHHHHHHHHH
Q 006154 266 DLEFALKLFRK 276 (658)
Q Consensus 266 ~~~~A~~~~~~ 276 (658)
+.+-...+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 77666666655
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.18 E-value=52 Score=27.09 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 006154 396 TYSILTKGLCRNGCVKQAFKLHNQVLEE 423 (658)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (658)
.++.+...+...|+.++|+..+..--..
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 3455555566667777776666554443
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.79 E-value=88 Score=25.66 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006154 551 EAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVT 605 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 605 (658)
.+..+|..|...|+.-. ...|......+...|++.+|.++|+..++.+-.|-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 36678888888776655 45577778888888888888888888888877776543
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=53.79 E-value=1.3e+02 Score=27.25 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHHH
Q 006154 262 CQVGDLEFALKLFR 275 (658)
Q Consensus 262 ~~~g~~~~A~~~~~ 275 (658)
+..|+.+-+..+++
T Consensus 39 ~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 39 IADNNVRLVCTLLN 52 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34454444444433
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.51 E-value=1.2e+02 Score=26.95 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=8.8
Q ss_pred cCChHHHHHHHHHHHHcCCCC
Q 006154 407 NGCVKQAFKLHNQVLEEHMVG 427 (658)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~ 427 (658)
.+......++.+.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 333333344444444444433
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.83 E-value=41 Score=29.29 Aligned_cols=12 Identities=25% Similarity=0.083 Sum_probs=5.7
Q ss_pred HHHHHhcCCHhH
Q 006154 188 LSHLVKLNEIGR 199 (658)
Q Consensus 188 l~~~~~~g~~~~ 199 (658)
+...++.|+.+-
T Consensus 46 L~~A~~~~~~~~ 57 (240)
T 3eu9_A 46 LHWAAINNRIDL 57 (240)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHhCCHHH
Confidence 344445555543
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=52.20 E-value=79 Score=29.24 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC--CHhHHHHHHHHHH
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN--EIGRFWKLYKEMV 208 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~ 208 (658)
...++.-|...|+.++|...++++..... .......++..-...+ .-+.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45678889999999999999998643322 2222233344333333 2234445555554
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.21 E-value=88 Score=31.34 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CcCH--HH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006154 181 IHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGY-VENV--NT-FNLVIYALCKECKLEEALSLYYRMLKS 245 (658)
Q Consensus 181 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~ 245 (658)
...+|.+++.|...+.++.|..+..+..-... .++. .. +-.+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666777777777777777777766642100 1111 12 223445555677777777777776654
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.09 E-value=1.4e+02 Score=26.98 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 006154 257 IINEACQVGDLEFALKLFR 275 (658)
Q Consensus 257 li~~~~~~g~~~~A~~~~~ 275 (658)
.+...+..|+.+-+..+++
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3344445555554444443
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.99 E-value=54 Score=27.56 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=9.1
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006154 259 NEACQVGDLEFALKLFRK 276 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~ 276 (658)
...+..|+.+-+..+++.
T Consensus 77 ~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666555555543
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.48 E-value=40 Score=30.02 Aligned_cols=118 Identities=8% Similarity=-0.049 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHh-------HHHHHHHHH--hcCCHhHHHHHHHHHHhCCC---------C-
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHA-------WNNFLSHLV--KLNEIGRFWKLYKEMVSCGY---------V- 213 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~---------~- 213 (658)
+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3445677888888888887777766555332 233333322 56777777777776543210 0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHH
Q 006154 214 ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC----------------FNMIINEACQVGDLEFALKLFR 275 (658)
Q Consensus 214 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 275 (658)
.|..-++. +...+..|+.+-+.. +++.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~t~-L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQTA-LHIAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBCH-HHHHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCH-HHHHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 00011222 333445677554433 344555555432 2344555566777776666665
No 294
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.83 E-value=2.6e+02 Score=28.98 Aligned_cols=199 Identities=11% Similarity=-0.050 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 006154 408 GCVKQAFKLHNQVLEEHMVGDAYSYNIL----INYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGGNIEGA 483 (658)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 483 (658)
.+.+.|...+....+.... +......+ ...+...+...++...+....... ++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 3778888888887654422 33322222 222333443556666666655443 3333333334444567999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006154 484 VQVYENMKKVEKKPNLVIYNSIINGLCKDASLDAAKSLLQASQRIGLLDAITYNTLINGYFINGKIAEAFAMFSEMRNVG 563 (658)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 563 (658)
...|+.|..... ......--+..++...|+.++|..+|+.+... ...|..+. ..+.|..-.. ....
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~~fYg~lA--a~~Lg~~~~~-------~~~~ 370 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RGFYPMVA--AQRIGEEYEL-------KIDK 370 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSHHHHHH--HHHTTCCCCC-------CCCC
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CChHHHHH--HHHcCCCCCC-------CCCC
Confidence 999988765321 13333445566777889999999999888753 12233221 1222321000 0000
Q ss_pred CCCC-hH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 006154 564 IAVN-KV-----GYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELH 626 (658)
Q Consensus 564 ~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 626 (658)
+.+. .. .-...+..+...|....|...+..+... . +......+.......|.++.++...
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 1110 00 1123345677889999999888887753 2 2333333444445566666555433
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.58 E-value=1.3e+02 Score=26.39 Aligned_cols=89 Identities=13% Similarity=-0.039 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--C-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQASQRIGLL--D-----AITYNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINF 577 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 577 (658)
-++.+....++++|..++++..+.-.. + .......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466677778888888887766543211 0 011122222222222333333444444 22 3345555566677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 006154 578 LCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 578 ~~~~g~~~~A~~~~~~~~~ 596 (658)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777766654
No 296
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.86 E-value=38 Score=22.83 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=33.4
Q ss_pred hhhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHhcc
Q 006154 49 KILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWVGE 86 (658)
Q Consensus 49 ~~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~~~ 86 (658)
..|..++|.+.+..|..||....++.+.|++.+.-+..
T Consensus 23 ~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 23 DDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 35788899999999999999999999999998877654
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.54 E-value=1.4e+02 Score=29.29 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHHh
Q 006154 57 SLTNSLVNRVVSEFRKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLMS 122 (658)
Q Consensus 57 ~l~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~ 122 (658)
.++.+.+..-+.....+++.|++.-.. .|++..-+.|..-.+-|...|++++|.++.-...+
T Consensus 328 ~v~e~~ivpyi~~~l~n~~lA~~lA~R----~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 328 CVEEENIIPYITNVLQNPDLALRMAVR----NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp EECTTTHHHHHHHTTCCHHHHHHHHHH----TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred EEccccchhhhhhccCCHHHHHHHHHh----cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 344444444333334689988875443 45566666788888899999999998887765443
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.44 E-value=2.2e+02 Score=27.56 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006154 577 FLCKFGCYQQARELMKVMILHGIIPD 602 (658)
Q Consensus 577 ~~~~~g~~~~A~~~~~~~~~~g~~p~ 602 (658)
..+..|+.+ +.+.+.+.|..|+
T Consensus 350 ~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 350 QAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHHCChHH----HHHHHHHCcCCCC
Confidence 334556654 3444455666554
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.40 E-value=1.3e+02 Score=26.55 Aligned_cols=89 Identities=15% Similarity=0.045 Sum_probs=44.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC--CCcc----CHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVK--GHSV----SIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNLVIYA 225 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~--g~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 225 (658)
-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466788889999999998877652 1111 001111222222222222333333333322 2344444455556
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006154 226 LCKECKLEEALSLYYRML 243 (658)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~ 243 (658)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665543
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.78 E-value=2.4e+02 Score=27.76 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHHH
Q 006154 142 CKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFNL 221 (658)
Q Consensus 142 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 221 (658)
.|-....|..-...+...|++++|-++....+. |+-.++.+.+.+-..=..-|+..-....|..+.+.| ..+..---.
T Consensus 357 LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlE 434 (494)
T 1bpo_A 357 LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLE 434 (494)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhH
Confidence 344445566667778889999999988877765 445577777666555445566666777777777665 345444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
+++....+|+.+-..+++.+ .....+... .-++ +..+..-|+.+|.+
T Consensus 435 l~r~vL~q~r~~llekWl~e---~KL~~SEeL-GDlv----k~~d~~LAl~IY~~ 481 (494)
T 1bpo_A 435 LCRPVLQQGRKQLLEKWLKE---DKLECSEEL-GDLV----KSVDPTLALSVYLR 481 (494)
T ss_dssp HHHHHHHTTCHHHHHHHHHH---TCSCCCHHH-HHHH----HHHCSHHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHHhc---CCccccHHh-Hhhh----hhcCHHHHHHHHHH
Confidence 55555666666655555543 112222221 2222 33466666766666
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.24 E-value=76 Score=27.55 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006154 551 EAFAMFSEMRNVGIAVN-KVGYNILINFLCKFGCYQQARELMKVMILHGIIP 601 (658)
Q Consensus 551 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 601 (658)
.+..+|..|...|+.-. ..-|......+...|++.+|.++|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34445555555444333 2334445555555555555555555555544444
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.94 E-value=1.6e+02 Score=24.53 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.8
Q ss_pred HhcCCHHHHHHHHHH
Q 006154 262 CQVGDLEFALKLFRK 276 (658)
Q Consensus 262 ~~~g~~~~A~~~~~~ 276 (658)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 345555555555543
No 303
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.92 E-value=49 Score=28.74 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006154 516 DAAKSLLQASQRIGLL--DAITYNTLINGYFINGKIAEAFAMFSEMRNVGIAV 566 (658)
Q Consensus 516 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 566 (658)
+++..+|..|...++. -+..|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666788888887776 67778888888888888888888888888766666
No 304
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.85 E-value=1.8e+02 Score=24.99 Aligned_cols=84 Identities=8% Similarity=-0.043 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCC---hhhHHHHHH
Q 006154 223 IYALCKECKLEEALSLYYRMLKSGIWPNVVC--FNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPN---SVTHNCIIN 297 (658)
Q Consensus 223 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~li~ 297 (658)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++. |..++ ....+ .+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------g~~~~~~~~~g~t-~l~ 84 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-------GASPMALDRHGQT-AAH 84 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------TCCTTCCCTTSCC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-------CCCccccCCCCCC-HHH
Confidence 3445677888888888887766665554331 22345555677887766655554 22222 22222 233
Q ss_pred HHHhcCChHHHHHHHHH
Q 006154 298 GFCKLGRVEFAEEIRYA 314 (658)
Q Consensus 298 ~~~~~g~~~~A~~~~~~ 314 (658)
..+..|+.+-...+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 44566776655555544
No 305
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=39.73 E-value=1.9e+02 Score=25.12 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 006154 305 VEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMP 357 (658)
Q Consensus 305 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 357 (658)
.+.+..+++.+.+.|+-.|..--...++.....+.+ ....+-.++...|+.+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 345566677777777665555555555555442211 2344555666677653
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.59 E-value=1.3e+02 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 006154 469 TLIDGYCKGGNIEGAVQVYENM 490 (658)
Q Consensus 469 ~li~~~~~~g~~~~A~~~~~~~ 490 (658)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.06 E-value=2.2e+02 Score=31.43 Aligned_cols=45 Identities=7% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHhcccCCCCCCHHhHHHHHHHHHcCCCchHHHHHHHHHH
Q 006154 71 RKSPKLALEFYTWVGENNRFSHSLESSCAIVHLLVNWRRFDDALLLMGNLM 121 (658)
Q Consensus 71 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 121 (658)
.+.++.|.++..|+.. ++-.-..+++++...|++++|...|+++.
T Consensus 823 ~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 823 FKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp TTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3467888888888764 33344678999999999999999998765
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.79 E-value=82 Score=21.91 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=35.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCC
Q 006154 593 VMILHGIIPDYVTYTTLVTRFSKNC-SPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654 (658)
Q Consensus 593 ~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 654 (658)
.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-.
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556666655443 3444444443 4455667777776665556667777777777666643
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.33 E-value=1.5e+02 Score=24.45 Aligned_cols=26 Identities=8% Similarity=-0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006154 569 VGYNILINFLCKFGCYQQARELMKVM 594 (658)
Q Consensus 569 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 594 (658)
.-|+.+...|.+.|+.++|++.+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 44677888888999999999988653
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.04 E-value=2e+02 Score=26.45 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 006154 220 NLVIYALCKECKLEEALSLYYRM 242 (658)
Q Consensus 220 ~~l~~~~~~~g~~~~A~~~~~~m 242 (658)
..++.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 44555555666666666666554
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.40 E-value=1.9e+02 Score=27.13 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCC
Q 006154 149 FDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN-EIGRFWKLYKEMVSCGYV 213 (658)
Q Consensus 149 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~ 213 (658)
...++.-|...|+.++|.+.++++......+ ......+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4568888999999999999998885322111 112222222222211 234556677777765543
No 312
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=36.19 E-value=55 Score=20.39 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=30.0
Q ss_pred hhhhhCCCCCHHHHHHHHHhcCCChHHHHHHHHHh
Q 006154 50 ILEQMAPSLTNSLVNRVVSEFRKSPKLALEFYTWV 84 (658)
Q Consensus 50 ~l~~~~~~l~~~~~~~vl~~~~~~~~~al~~f~~~ 84 (658)
.|..++|.++...+..+|....++.+.|....--.
T Consensus 10 ~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 10 ILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46678999999999999999999999998876554
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.72 E-value=1.5e+02 Score=22.97 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=8.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006154 505 IINGLCKDASLDAAKSLLQAS 525 (658)
Q Consensus 505 l~~~~~~~g~~~~a~~~~~~~ 525 (658)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 333333444444444444433
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.34 E-value=2.2e+02 Score=31.40 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcCHHHHH
Q 006154 141 ICKATPAVFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGRFWKLYKEMVSCGYVENVNTFN 220 (658)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 220 (658)
.++.++..-..++++|...|++++|.+.|++.-. |+..+...... ......++... +. .......|.
T Consensus 835 ~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~----------~~~~~~ll~~~-e~-~~~~~~YY~ 901 (950)
T 4gq2_M 835 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------LREFQEIAEKY-HH-QNLLSCYYL 901 (950)
T ss_dssp GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------GHHHHHHHHHT-TT-CSHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------hhhhhhccCcc-cc-cchhHHHHH
Confidence 4555665556677777777888777777776532 22111100000 00011111110 00 011234688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcC
Q 006154 221 LVIYALCKECKLEEALSLYYRMLKSGIWPNV----VCFNMIINEACQVG 265 (658)
Q Consensus 221 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g 265 (658)
.++..+-+.+.++-+.++-+..++.--.-|. ..|..+.++.+..|
T Consensus 902 hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 902 HLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 8888999999999988888877754211122 25667777776654
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.12 E-value=1.5e+02 Score=24.22 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=40.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 006154 543 YFINGKIAEAFAMFSEMRNVGIAV--NKVGYNILIN-F-----LCKFGCYQQARELMKVMIL 596 (658)
Q Consensus 543 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 596 (658)
+...|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445699999999999986654445 4556677777 2 3467999999999998875
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.71 E-value=1.2e+02 Score=24.14 Aligned_cols=59 Identities=3% Similarity=-0.113 Sum_probs=31.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 653 (658)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555544332 2333444444455566666666665555566666666666665554
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.44 E-value=1e+02 Score=28.96 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006154 362 YNSTIHWLFAEGDVEGALFVLSDMI 386 (658)
Q Consensus 362 ~~~ll~~~~~~g~~~~a~~~~~~~~ 386 (658)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777788888887777764
No 318
>1iw4_A Trypsin inhibitor; solution structure, ascidian, cystine-stabilized alpha-helical motif, disulfide bond, kazal-type inhibitor; NMR {Halocynthia roretzi} SCOP: g.68.1.1
Probab=33.24 E-value=7.5 Score=22.89 Aligned_cols=7 Identities=43% Similarity=1.592 Sum_probs=4.3
Q ss_pred hhhhhhh
Q 006154 2 FSAFCNC 8 (658)
Q Consensus 2 ~~~~~~~ 8 (658)
|||+|||
T Consensus 8 fnplcrc 14 (55)
T 1iw4_A 8 FNPLCRC 14 (55)
T ss_dssp SSSTTCC
T ss_pred cchHHHH
Confidence 5666665
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.40 E-value=3.5e+02 Score=26.07 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=51.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHh--HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCcC---HHHHHHHHHHHH
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSIHA--WNNFLSHLVKLNEIGRFWKLYKEMVSCGYVEN---VNTFNLVIYALC 227 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~ 227 (658)
+...+..|+.+-+..++ +.|..++... ..+.+...++.|+.+-+..+++. |..++ ....+ .+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t-~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQT-PLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCC-HHHHHH
T ss_pred HHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCC-HHHHHH
Confidence 33445667765444444 4454443221 12344455566776655554443 33222 11122 233445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 228 KECKLEEALSLYYRMLKSGIWPNVV--CFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
+.|+.+-+.-++ +.|..|+.. .-.+.+...+..|+.+....+++.
T Consensus 89 ~~g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 89 RIGHTNMVKLLL----ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HCCCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence 566665444333 334433322 112234445566777777766665
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.77 E-value=3.7e+02 Score=26.96 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCh--hhHH-HHHHHHHhcCCHHHHHHHHHHh
Q 006154 216 VNTFNLVIYALCKECKLEEALSLYYRMLKSGI-WPNV--VCFN-MIINEACQVGDLEFALKLFRKM 277 (658)
Q Consensus 216 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~~ 277 (658)
...+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+...+.-.+++.+|.+.|...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66788889999999999999998887641100 0111 2333 3456677789999998888873
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.66 E-value=1.7e+02 Score=23.36 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=34.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCC
Q 006154 593 VMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654 (658)
Q Consensus 593 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 654 (658)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3445565544332 234444555555666777777776665566666666666666666643
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.49 E-value=1.2e+02 Score=23.75 Aligned_cols=59 Identities=5% Similarity=0.031 Sum_probs=29.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFSKNC-SPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 653 (658)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445555443332 2333444443 445566666666665555555555555555555553
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.41 E-value=2.6e+02 Score=23.95 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=38.8
Q ss_pred hhHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCC
Q 006154 534 ITYNTLINGYF---INGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC-----YQQARELMKVMILHGIIP 601 (658)
Q Consensus 534 ~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~g~~p 601 (658)
..+..+++++. +-.+++.|+-.+-+|++.|-.|....-..++-+...-|. ...|...++....-|.+-
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 33444445543 346777777777777777766655555555555555553 334555555555556543
No 324
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.37 E-value=2e+02 Score=25.15 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=62.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCH-------HhHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCc--------
Q 006154 153 VRACTQIGATEGAYDVIQKLKVKGHSVSI-------HAWNNFLSHLVKL---NEIGRFWKLYKEMVSCGYVE-------- 214 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~g~~~-------- 214 (658)
+...++.|+.+....+++.+.+.|..++. .-++ .+...+.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44456778888887888877777665443 2222 33334444 77777777776655432111
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh---------------HHHHHHHHHhcCCHHHHHHHHH
Q 006154 215 --NVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC---------------FNMIINEACQVGDLEFALKLFR 275 (658)
Q Consensus 215 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---------------~~~li~~~~~~g~~~~A~~~~~ 275 (658)
|..-.+. +...+..|+.+-+..+ ++.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 85 ~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 85 DEFYQGHSA-LHIAIEKRSLQCVKLL----VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp STTTTTCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1122233 3334456665544433 44455544332 2234555566777776666665
No 325
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.21 E-value=4e+02 Score=26.10 Aligned_cols=99 Identities=16% Similarity=0.034 Sum_probs=49.9
Q ss_pred CCCHHhHHHHHHHHHcCCCchHHHHHHHHHHhcCC-------CChHHHHHHHHhhc-cCCCCCHHHHHHHHHHHH---hc
Q 006154 91 SHSLESSCAIVHLLVNWRRFDDALLLMGNLMSANS-------VSPLEFLEGLLDSY-EICKATPAVFDALVRACT---QI 159 (658)
Q Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~---~~ 159 (658)
..+.++...++.. ..|+..++..+++.+..... .-..+.+...+... .....+...+..++.++. +.
T Consensus 191 ~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirg 268 (447)
T 3pvs_A 191 VLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRG 268 (447)
T ss_dssp ECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhC
Confidence 3456666666655 46888888888887765422 11223333333211 111111122333444443 34
Q ss_pred CChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 006154 160 GATEGAYDVIQKLKVKGHSVSIHAWNNFLSHL 191 (658)
Q Consensus 160 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 191 (658)
++.+.|+..+.+|.+.|..|....-..+..+.
T Consensus 269 sd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67777777777777776654443333333333
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.13 E-value=1.3e+02 Score=24.09 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=32.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFSKNC-SPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKSA 654 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 654 (658)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4455655554332 2333444443 4455666666666665555666666666666665543
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.43 E-value=2.8e+02 Score=23.64 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=10.3
Q ss_pred HhcCChHHHHHHHHHHHHcCC
Q 006154 405 CRNGCVKQAFKLHNQVLEEHM 425 (658)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~ 425 (658)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 344555555445555555443
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.26 E-value=47 Score=29.53 Aligned_cols=89 Identities=12% Similarity=-0.053 Sum_probs=46.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCcCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCC
Q 006154 188 LSHLVKLNEIGRFWKLYKEMVSCGYVENVNT-------FNLVIYALC--KECKLEEALSLYYRMLKSG---------IWP 249 (658)
Q Consensus 188 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~m~~~~---------~~p 249 (658)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4445667888887788887776665554322 233333332 5577776666666543311 110
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 250 NVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 250 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
....-.+.+...+..|+.+-+.-+++.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 000112234445566777666655553
No 329
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.11 E-value=3.9e+02 Score=25.30 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccccCC-cCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 006154 255 NMIINEACQVGDLEFALKLFRKMGVMSGDS-VLPNSVTHNCIINGFCKLGRVEFAEEIRYAMIKAGIDCNVRTYATLIDG 333 (658)
Q Consensus 255 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 333 (658)
..+|.-|...|+.++|.+.+++ +...+ +.|..+........=.+....+.+-.++..+...++-+.......+...
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~e---L~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~l 92 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVRE---MRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNV 92 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHH---HTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH---hCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_pred HHhcCChH----HHHHHHHHHHHCCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-
Q 006154 334 YARGGSSE----EALRLCDEMVKRGLMPNNVVYNSTIHWLFAEGDVEGALFVLSDMIDKHICPDHFTYSILTKGLCRNG- 408 (658)
Q Consensus 334 ~~~~g~~~----~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 408 (658)
+....+.. .|..++.++....+.-+..+...+...+...+...-...++..+. ....-..+...+.+.|
T Consensus 93 le~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~------k~~G~~~l~~l~~~sgl 166 (364)
T 3l6a_A 93 LDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLA------KLQDREWLTELFQQSKV 166 (364)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHH------HHSCHHHHHHHHHHHTC
T ss_pred HhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHH------HhcCHHHHHHHHHHcCC
Q ss_pred -----------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006154 409 -----------CVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK 476 (658)
Q Consensus 409 -----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 476 (658)
..+...+.++.-.-....|-...-..|...+......++..+..+.-......++.....+++.+.++
T Consensus 167 ~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~ 245 (364)
T 3l6a_A 167 NMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQ 245 (364)
T ss_dssp CSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHH
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.61 E-value=2.8e+02 Score=23.51 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=9.5
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006154 259 NEACQVGDLEFALKLFRK 276 (658)
Q Consensus 259 ~~~~~~g~~~~A~~~~~~ 276 (658)
...+..|+.+....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445566555555554
No 331
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.51 E-value=4.5e+02 Score=25.76 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDG 473 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 473 (658)
.++.+.|+..+.+|.+.|..|....-..++.+
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45566666666666665554443333333333
No 332
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.33 E-value=1.9e+02 Score=23.25 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCC
Q 006154 148 VFDALVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNE--IGRFWKLYKEMVSCGYV 213 (658)
Q Consensus 148 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~ 213 (658)
....++.-|...|+.++|.+.++++....+. .......+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456788888899999999999988532111 22233344444444322 34566777777665543
No 333
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.72 E-value=2.9e+02 Score=23.40 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=11.3
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 006154 153 VRACTQIGATEGAYDVIQK 171 (658)
Q Consensus 153 ~~~~~~~g~~~~A~~~~~~ 171 (658)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444566777666666654
No 334
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.52 E-value=3.1e+02 Score=23.28 Aligned_cols=59 Identities=15% Similarity=0.013 Sum_probs=33.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006154 330 LIDGYARGGSSEEALRLCDEMVKRGLMPNNVV--YNSTIHWLFAEGDVEGALFVLSDMIDKHICP 392 (658)
Q Consensus 330 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 392 (658)
.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.+.+.|..+
T Consensus 124 ~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 124 PLSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34444556665443 33445555544321 1234556667788887777777777776543
No 335
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=25.42 E-value=3.6e+02 Score=24.01 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhCCChHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL---HGIIPDYVTYTTLVT-----RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 584 ~~~A~~~~~~~~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 631 (658)
.+.|.+.++.+.+ ..++|...+.-.|+- -|--.+++++|.++.++..+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666665542 246776555443332 24457899998887666544
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.08 E-value=1.2e+02 Score=24.19 Aligned_cols=58 Identities=5% Similarity=-0.113 Sum_probs=28.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 006154 594 MILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLSGVSPDNQTYNAIISPLLGEKS 653 (658)
Q Consensus 594 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 653 (658)
+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3344555443322 2233333333 44566666666655555555555555555555543
No 337
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.01 E-value=3e+02 Score=23.49 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhcccccCCcCCChhhHHHHHHHHHh
Q 006154 222 VIYALCKECKLEEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRKMGVMSGDSVLPNSVTHNCIINGFCK 301 (658)
Q Consensus 222 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 301 (658)
.+...++.|+.+-+..+++. ...+......-.+.+...+..|+.+-+..+++. ...+......-.+.+...+.
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-----GALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-----TCCCCCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhHHHH--HHHHHHhcCCHHHHH
Q 006154 302 LGRVEFAEEIRYAMIKAGIDCNVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVVYNS--TIHWLFAEGDVEGAL 379 (658)
Q Consensus 302 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~ 379 (658)
.|+.+-+..+++.-...--..+....+.+..+..... .++++.+.+.|..++...... .+...+..|..+
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~--- 158 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD--- 158 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH---
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH---
Q ss_pred HHHHHHHhCCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006154 380 FVLSDMIDKHICPDHFTYS--ILTKGLCRNGCVKQAFKLHNQVLEEHMVGDAYSYNILINYLCKSNNLAAAKQLLSSMIV 457 (658)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 457 (658)
+++.+.+.|..++..... +.+...++.|+.+-+.-+++. ...+......-.+.+......|+...+.++.+.+.+
T Consensus 159 -~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 159 -IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp -HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred C
Q 006154 458 R 458 (658)
Q Consensus 458 ~ 458 (658)
.
T Consensus 236 s 236 (237)
T 3b7b_A 236 S 236 (237)
T ss_dssp C
T ss_pred c
No 338
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=24.60 E-value=2.8e+02 Score=22.46 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006154 233 EEALSLYYRMLKSGIWPNVVCFNMIINEACQVGDLEFALKLFRK 276 (658)
Q Consensus 233 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 276 (658)
+.+..+|+.+-..| -...+|.-++..+.+...+-..+..|+.
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 44555555553321 1344555565555555555555555544
No 339
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.44 E-value=3.3e+02 Score=23.14 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHHHH
Q 006154 546 NGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC-----YQQARELMKVMILHGIIPDYVTY 606 (658)
Q Consensus 546 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~g~~p~~~~~ 606 (658)
-.+.+.|+-.+-+|++.| .|....-..++-+...-|. ...|...++....-|.+--....
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 91 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPL 91 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 457777777777777777 5555555555555555553 23344445555555654333333
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.34 E-value=2.3e+02 Score=24.29 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 006154 549 IAEAFAMFSEMRNVGIAVNKV-------GYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSP 619 (658)
Q Consensus 549 ~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 619 (658)
++.|+.+|+.+.+....|+.. .-...+..|.+.|.+++|.+++++.... .|+..-...-+....+.++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhccCc
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.06 E-value=2.2e+02 Score=22.53 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006154 558 EMRNVGIAVNKVGYNILINFLCKFGCYQQARELMKVMILHGIIPDYVTYTTLVTRFSKNCS 618 (658)
Q Consensus 558 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 618 (658)
.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665544 224445555555556677777777766555566655555555655553
No 342
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.79 E-value=2.6e+02 Score=21.69 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 006154 536 YNTLINGYFINGKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFGC--YQQARELMKVMILHGIIPDYVTYTT 608 (658)
Q Consensus 536 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~ 608 (658)
...++.-|...|+.++|.+.++++..... -.......+..++-+.++ .+.+.+++..+...|+-+.......
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 45678889999999999999999863211 123334555566666542 4678888888887776655444333
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.38 E-value=3.4e+02 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006154 442 SNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCKGG 478 (658)
Q Consensus 442 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 478 (658)
..+.+.|+-.+-+|++.| .|....-..++.+...-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345555555555555555 444444444444443333
No 344
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.93 E-value=3.5e+02 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 006154 547 GKIAEAFAMFSEMRNVGIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 547 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 582 (658)
.+.+.|+-.+-+|++.|-.|....-..++-+...-|
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455555555555555554444443334444443333
No 345
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.92 E-value=87 Score=19.85 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHH
Q 006154 589 ELMKVMILHGIIPDYVTYTTLVTRFSKNCS--PEEVIELHDDMV 630 (658)
Q Consensus 589 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~ 630 (658)
+.++.+++.|+.++. ...++.+.|. ++.|++++.+|-
T Consensus 11 qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 11 QMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 445556666665532 2334455555 777777777773
No 346
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.73 E-value=4.4e+02 Score=24.08 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.6
Q ss_pred HhcCChhH
Q 006154 157 TQIGATEG 164 (658)
Q Consensus 157 ~~~g~~~~ 164 (658)
++.|+.+-
T Consensus 33 v~~g~~~~ 40 (337)
T 4g8k_A 33 VQNEDVDL 40 (337)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 44455443
No 347
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.68 E-value=2.8e+02 Score=24.54 Aligned_cols=119 Identities=8% Similarity=0.010 Sum_probs=62.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcc-------CHHhHHHHHHHHH--hcCCHhHHHHHHHHHHhCC---------CC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSV-------SIHAWNNFLSHLV--KLNEIGRFWKLYKEMVSCG---------YV 213 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~-------~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~g---------~~ 213 (658)
.+...++.|+.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+..+++.-...+ ..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 3444567888888888888777665432 2233334444433 3477777777776643211 10
Q ss_pred -cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHH
Q 006154 214 -ENVNTFNLVIYALCKECKLEEALSLYYRMLKSGIWPNVVC----------------FNMIINEACQVGDLEFALKLFR 275 (658)
Q Consensus 214 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 275 (658)
.|..-.+.|. ..++.|+.+-+..+ ++.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 96 ~~d~~g~tpL~-~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 96 DSYYKGQTALH-IAIERRNMTLVTLL----VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp STTTTTCCHHH-HHHHTTCHHHHHHH----HHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCCHHH-HHHHcCCHHHHHHH----HHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1112223333 33456665544443 34454444332 2234455566777776666665
No 348
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.43 E-value=2.3e+02 Score=20.70 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 006154 552 AFAMFSEMRNVGIAVNKVGYNILINFLCKFG 582 (658)
Q Consensus 552 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 582 (658)
|.++.++....|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444455555555555555555555554444
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.01 E-value=3.2e+02 Score=22.21 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=26.6
Q ss_pred hcCChhHHHHHHHHHHhCCCcc--CHHhHHHHHH-H-----HHhcCCHhHHHHHHHHHH
Q 006154 158 QIGATEGAYDVIQKLKVKGHSV--SIHAWNNFLS-H-----LVKLNEIGRFWKLYKEMV 208 (658)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~-~-----~~~~g~~~~a~~~~~~~~ 208 (658)
..|++=+|=++++........+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3477777777777766654333 3334444444 1 123455555555555544
No 350
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.88 E-value=2.3e+02 Score=23.04 Aligned_cols=67 Identities=9% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCC
Q 006154 585 QQARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDMVLS--GVSPDNQTYNAIISPLLGEK 652 (658)
Q Consensus 585 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g 652 (658)
+.-..+-+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 15 ~~~~~~~~~L~~~g~r~T~qR~~-IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQREV-LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHH-HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.78 E-value=2.2e+02 Score=22.25 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 006154 583 CYQQARELMKVMILHGIIPDYVTYTTLVTRFSKN 616 (658)
Q Consensus 583 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 616 (658)
..-.|.++++.+.+.+...+..|...-+..+.+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555555544444444433333444333
No 352
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.72 E-value=3.4e+02 Score=22.38 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=41.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCcHhH---HHHHHHHHHh-cCC
Q 006154 300 CKLGRVEFAEEIRYAMIKAGIDC-NVRTYATLIDGYARGGSSEEALRLCDEMVKRGLMPNNVV---YNSTIHWLFA-EGD 374 (658)
Q Consensus 300 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~ll~~~~~-~g~ 374 (658)
++.|+++....++.. +... +...-.+.+...+..|+.+.-.++.+.+.+.|..++... ++.|..+... ..+
T Consensus 14 a~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 456776665544432 2111 101112344555566666655666666677776555421 2222222111 223
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 006154 375 VEGALFVLSDMIDKHICPD 393 (658)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~ 393 (658)
.....++.+.+++.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3344555556666665444
No 353
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.65 E-value=2.4e+02 Score=20.61 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHhh
Q 006154 586 QARELMKVMILHGIIPDYVTYTTLVTRFSKNCSPEEVIELHDDM-----VLSGVSPDNQTYNAIISPLL 649 (658)
Q Consensus 586 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~~~~~l~~~~~ 649 (658)
.|.++.++....|+.|+..+..-++..|...+- + +.++.++. ...|..|+....+.+=.-+.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEhEvl 93 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEHEFL 93 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 366777788888999999988888887766553 1 33322221 23488999888777654433
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.30 E-value=1.7e+02 Score=22.76 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcC
Q 006154 152 LVRACTQIGATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLN 195 (658)
Q Consensus 152 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 195 (658)
++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666666655555555555555555544
No 355
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.97 E-value=4.2e+02 Score=23.16 Aligned_cols=57 Identities=5% Similarity=-0.001 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHH
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRGLIPDIITYGTLIDGYCK-GGNIEGAVQVYENM 490 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 490 (658)
.++....+.+++++.....+++.+.+...+..-.+.|-.+|-. .|....+++++..+
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissi 67 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 67 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444555566666666666666665555555555555555432 23334444444443
No 356
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.61 E-value=1.5e+02 Score=21.60 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHhcCCHhH
Q 006154 161 ATEGAYDVIQKLKVKGHSVSIHAWNNFLSHLVKLNEIGR 199 (658)
Q Consensus 161 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 199 (658)
..++|.+++..+..+|. .+|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHH
Confidence 44555555555555542 245555555544444433
No 357
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.45 E-value=4.6e+02 Score=23.37 Aligned_cols=58 Identities=5% Similarity=0.014 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHH
Q 006154 434 ILINYLCKSNNLAAAKQLLSSMIVRG--LIPDIITYGTLIDGYCK-GGNIEGAVQVYENMK 491 (658)
Q Consensus 434 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~ 491 (658)
.++....+.+++++.....+++.+.+ ...+..-.+.|-.+|-. .|....+++++..+.
T Consensus 13 ~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 13 YMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34555556677777777777766655 55566655555555532 244444555554443
No 358
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.19 E-value=5e+02 Score=23.71 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=3.9
Q ss_pred HHHHCCCCCC
Q 006154 558 EMRNVGIAVN 567 (658)
Q Consensus 558 ~~~~~~~~p~ 567 (658)
-+++.|-.||
T Consensus 319 ~Ll~~GA~~d 328 (337)
T 4g8k_A 319 VLLSHGAKED 328 (337)
T ss_dssp HHHHTTCCC-
T ss_pred HHHHCcCCCC
Confidence 3444444443
No 359
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.08 E-value=4.5e+02 Score=23.18 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhCCChHHHHHHHHHHHH
Q 006154 584 YQQARELMKVMIL---HGIIPDYVTYTTLVT-----RFSKNCSPEEVIELHDDMVL 631 (658)
Q Consensus 584 ~~~A~~~~~~~~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 631 (658)
.+.|.+.|+.+.+ ..++|...+.-.|+- .|--.+++++|.++.++..+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666665442 246776554433332 24457888888887666544
Done!