Query 006156
Match_columns 658
No_of_seqs 316 out of 1684
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 19:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2224 Uncharacterized conser 100.0 1.7E-51 3.6E-56 423.1 28.0 301 328-630 404-736 (781)
2 KOG1648 Uncharacterized conser 100.0 9.3E-52 2E-56 430.7 10.2 520 39-621 248-800 (813)
3 KOG2197 Ypt/Rab-specific GTPas 100.0 3.6E-43 7.9E-48 387.3 13.2 308 323-631 142-449 (488)
4 KOG4567 GTPase-activating prot 100.0 6.1E-42 1.3E-46 342.7 19.9 288 334-627 12-364 (370)
5 KOG2058 Ypt/Rab GTPase activat 100.0 2.2E-40 4.9E-45 354.5 19.5 252 331-607 123-383 (436)
6 KOG1092 Ypt/Rab-specific GTPas 100.0 4E-39 8.6E-44 333.7 18.2 276 343-629 174-479 (484)
7 smart00164 TBC Domain in Tre-2 100.0 6.4E-38 1.4E-42 310.9 16.3 194 356-568 2-197 (199)
8 KOG2223 Uncharacterized conser 100.0 2.4E-37 5.3E-42 319.8 15.8 285 333-632 276-564 (586)
9 PF12068 DUF3548: Domain of un 100.0 2.5E-37 5.4E-42 304.2 14.4 148 42-189 3-200 (213)
10 COG5210 GTPase-activating prot 100.0 4.6E-35 1E-39 328.6 21.1 247 327-593 179-430 (496)
11 PF00566 RabGAP-TBC: Rab-GTPas 100.0 2.4E-33 5.1E-38 280.4 17.1 212 361-590 1-214 (214)
12 KOG2222 Uncharacterized conser 100.0 2.1E-29 4.6E-34 262.6 17.0 261 334-620 149-415 (848)
13 KOG1093 Predicted protein kina 99.9 1.8E-27 4E-32 254.4 16.5 242 355-629 352-596 (725)
14 KOG4436 Predicted GTPase activ 99.9 7.7E-26 1.7E-30 249.4 19.0 257 331-610 549-810 (948)
15 KOG4347 GTPase-activating prot 99.9 3.8E-26 8.2E-31 248.8 16.2 245 332-604 174-422 (671)
16 KOG1091 Ypt/Rab-specific GTPas 99.9 2E-24 4.3E-29 231.5 18.7 265 362-632 28-371 (625)
17 KOG2595 Predicted GTPase activ 99.9 4E-23 8.6E-28 209.9 14.2 256 345-631 46-308 (395)
18 KOG1102 Rab6 GTPase activator 99.9 1.8E-22 3.8E-27 219.5 13.7 233 346-606 134-367 (397)
19 KOG2221 PDZ-domain interacting 99.8 3.5E-19 7.7E-24 171.2 5.9 190 331-544 75-267 (267)
20 KOG4436 Predicted GTPase activ 99.5 1.2E-13 2.5E-18 153.9 10.3 243 345-610 172-425 (948)
21 KOG3636 Uncharacterized conser 99.5 3.8E-13 8.2E-18 141.2 12.6 183 442-630 89-278 (669)
22 KOG2801 Probable Rab-GAPs [Int 99.0 3.8E-09 8.1E-14 106.3 14.7 246 346-623 31-293 (559)
23 KOG2197 Ypt/Rab-specific GTPas 97.6 5.1E-05 1.1E-09 85.1 4.7 84 323-406 42-125 (488)
24 KOG2224 Uncharacterized conser 97.0 0.00022 4.8E-09 75.7 0.7 34 462-495 566-599 (781)
25 PF14961 BROMI: Broad-minded p 96.9 0.0094 2E-07 71.5 13.3 170 447-620 1085-1274(1296)
26 PF08567 TFIIH_BTF_p62_N: TFII 59.4 65 0.0014 27.1 8.0 65 64-142 12-78 (79)
27 PF14472 DUF4429: Domain of un 53.0 14 0.0003 32.2 3.0 31 104-134 27-58 (94)
28 KOG1102 Rab6 GTPase activator 48.7 5.9 0.00013 43.8 0.1 115 422-568 2-116 (397)
29 PF14788 EF-hand_10: EF hand; 34.5 56 0.0012 25.2 3.4 34 594-631 2-35 (51)
30 PF04683 Proteasom_Rpn13: Prot 29.8 3.1E+02 0.0067 23.3 7.6 57 61-127 12-69 (85)
31 COG1507 Uncharacterized conser 25.7 1.4E+02 0.003 28.2 5.0 31 110-141 20-53 (167)
32 cd01047 ACSF Aerobic Cyclase S 25.4 95 0.0021 32.8 4.4 61 525-585 162-226 (323)
33 PF11605 Vps36_ESCRT-II: Vacuo 25.2 3.3E+02 0.0072 23.4 7.1 72 44-131 15-88 (89)
34 TIGR02029 AcsF magnesium-proto 23.0 1.1E+02 0.0025 32.4 4.4 61 525-585 172-236 (337)
35 CHL00185 ycf59 magnesium-proto 21.7 1.2E+02 0.0026 32.4 4.3 60 525-584 178-241 (351)
36 PF08109 Antimicrobial14: Lact 21.2 46 0.001 21.8 0.7 16 462-477 3-18 (31)
37 PLN02508 magnesium-protoporphy 21.1 1.3E+02 0.0027 32.3 4.3 60 525-584 178-241 (357)
38 PRK13654 magnesium-protoporphy 20.1 1E+02 0.0022 33.1 3.3 60 525-584 182-245 (355)
No 1
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-51 Score=423.05 Aligned_cols=301 Identities=38% Similarity=0.764 Sum_probs=269.4
Q ss_pred CCCHHHHHh-ccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh-cC
Q 006156 328 PLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-SI 405 (658)
Q Consensus 328 pl~~~~W~~-~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~-~~ 405 (658)
.++..-|.. .+++.|.+-+.-+||+.+|.|||..++|++||+|||.+|...||.++|+.+...++++|+++.++-. ++
T Consensus 404 ki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysm 483 (781)
T KOG2224|consen 404 KIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSM 483 (781)
T ss_pred hhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456667876 7788899888889999999999999999999999999999999999999999999999999877543 66
Q ss_pred ChHHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhH
Q 006156 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 485 (658)
Q Consensus 406 ~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~a 485 (658)
++++ ....|+...-.++|||.||+|+++||.+++||+.+.|+|||..|+.|||.+||-|||+|+++|.|.-.+||.++
T Consensus 484 spee--h~~fwknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqneset 561 (781)
T KOG2224|consen 484 SPEE--HIAFWKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESET 561 (781)
T ss_pred CHHH--HHHHHhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccch
Confidence 6655 33467777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC------------------------C--C--CCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCC--
Q 006156 486 FWCFVALMERLGP------------------------N--F--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL-- 535 (658)
Q Consensus 486 Fw~f~~lm~~~~~------------------------~--f--~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~-- 535 (658)
||||+++|..|.+ | | .+....|..++..+++|++.+.|.+|+||++++-+
T Consensus 562 fwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~l 641 (781)
T KOG2224|consen 562 FWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGL 641 (781)
T ss_pred hhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchh
Confidence 9999999985421 1 2 12235688999999999999999999999998644
Q ss_pred chhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHH
Q 006156 536 NYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAI 615 (658)
Q Consensus 536 ~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~l 615 (658)
.+.||.||++.+|+|+||-..++|||+..|++|....||+|+|+||+..+.+.++.++...||++-+|.++.+.||-+-+
T Consensus 642 ellfchrwlllcfkref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgeli 721 (781)
T KOG2224|consen 642 ELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELI 721 (781)
T ss_pred hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhh
Confidence 46899999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 006156 616 LRDAEALCICAGENG 630 (658)
Q Consensus 616 L~~A~~L~~~~~e~~ 630 (658)
|++|+.|..+..-..
T Consensus 722 lrkar~ll~qfr~lp 736 (781)
T KOG2224|consen 722 LRKARGLLHQFRLLP 736 (781)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999988776554
No 2
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=9.3e-52 Score=430.71 Aligned_cols=520 Identities=23% Similarity=0.365 Sum_probs=390.2
Q ss_pred CCCCcEEEEeeCceEEccCccccccccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEE
Q 006156 39 ESEGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRR 116 (658)
Q Consensus 39 ~~~~~~llf~Ks~V~vhpt~~~~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~i~si~~ 116 (658)
+.++++|||+||+|.|+|.. +++.+||||+|+|-...++|+|+||+.|+++...++.+.+.||.++ |++.+|.+|||
T Consensus 248 qnsr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHc 326 (813)
T KOG1648|consen 248 QNSRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHC 326 (813)
T ss_pred hcchhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEe
Confidence 44788999999999999986 8999999999999999999999999999998888888999999876 99999999999
Q ss_pred ecCCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhcccccccCCCCceEEEeCC---chhHHhhhcccCCCccc-
Q 006156 117 HTPAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV- 191 (658)
Q Consensus 117 ~~p~~g~~~~i~~~~dg~~~P~L~F~~GG~-~~fl~~L~~~~~l~rs~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~- 191 (658)
|+.....+++++|.+||++.|||+|+.||+ ..||+||++ +.|+++++||++|...+- -+.|++- |+.......
T Consensus 327 HQq~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~ 404 (813)
T KOG1648|consen 327 HQQDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAME 404 (813)
T ss_pred ecccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhh
Confidence 999866789999999999999999999999 699999988 999999999999999772 2556432 111111000
Q ss_pred ccCCCCCCCcccC-CCCCcccccccCC--CC-------------CCCCCccccccc---cccccCCCchhhhhHHHHhhh
Q 006156 192 SIASGSSTPVSIG-DSPTNVNLERTNG--GL-------------GHDSHSISQFHG---RQKQKAQDPARDISIQVLEKF 252 (658)
Q Consensus 192 ~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~ 252 (658)
.-.....+||++. +.++..+....|- .. +..+.+++...+ .+......++ .+.+.++|
T Consensus 405 ~~~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~llC-- 481 (813)
T KOG1648|consen 405 MGTGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLLC-- 481 (813)
T ss_pred cCcccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHHH--
Confidence 0011245677764 4343333222221 00 011112221111 1112223333 36677887
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCccchhccccccccccCcCCCcchhhhc---cc-CCCCCCcccccccccccCCCCCCC
Q 006156 253 SLVTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---NE-IPVAPDPVEFDKLTLVWGKPRQPP 328 (658)
Q Consensus 253 s~~t~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~-~~~~~~~~~~~~~~~~~~~~r~~p 328 (658)
.+|.+|+++++| |||.+|+| |+++|++++. +- .-.|.+|. .....
T Consensus 482 ---~sMk~QI~sRAF-----YGWLaycR------------HLsTvRTHLsaLV~h~~~~pD~pc-----------da~~g 530 (813)
T KOG1648|consen 482 ---QSMKNQIMSRAF-----YGWLAYCR------------HLSTVRTHLSALVDHKTLIPDDPC-----------DASAG 530 (813)
T ss_pred ---HHHHHHHHHHHH-----HHHHHHHH------------HHHHHHHHHHHHhcccccCCCCCC-----------Ccccc
Confidence 999999999999 99999954 5566666652 11 11222332 23457
Q ss_pred CCHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 006156 329 LGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (658)
Q Consensus 329 l~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~ 408 (658)
+++.-|+.+..+. .+..-++.+...+||+....|+.+|+++++.+...+...+.+.........|.+....|..
T Consensus 531 lt~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~---- 604 (813)
T KOG1648|consen 531 LTEKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFR---- 604 (813)
T ss_pred ccHHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHh----
Confidence 9999999986542 2333445555678999999999999999999988888777777667777888876665543
Q ss_pred HHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHH
Q 006156 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (658)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~ 488 (658)
-..++|+||+.|++++..+|...++ ++. +++..+|...|-+-||.|||+|+.+|++..++||..+--|
T Consensus 605 ---------~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~ 672 (813)
T KOG1648|consen 605 ---------ANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLEC 672 (813)
T ss_pred ---------hheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCC
Confidence 3468999999999999999998664 455 8899999999999999999999999999999999888889
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhc
Q 006156 489 FVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 568 (658)
Q Consensus 489 f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~ 568 (658)
|.-+|-+-+..|.. .+||...+..++ +++..+|-... .+.. .-..|+||+.-|+++++.+.....|+++|...
T Consensus 673 ~s~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~s~----id~~-qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (813)
T KOG1648|consen 673 FSLLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLISD----IDYA-QALSFRWFLLDFKRELSYECTYKVWEVIWAAQ 745 (813)
T ss_pred CcHHHHHhcccCCC-CCCccccccccc-chhhhcchhcc----hhhh-hhcceeeeccCcccccCCCCcceeeEeecccc
Confidence 99888877776654 467777766666 78888882221 1211 12348999999999999999999999999843
Q ss_pred c---ChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006156 569 L---SEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEA 621 (658)
Q Consensus 569 ~---~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~ 621 (658)
. ...|-+|+++|. -.+-+.++.+.++..++++|+|+.....|.+.++..|..
T Consensus 746 ~~~~~~~~~i~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e~~~c~r~~~~~~~ 800 (813)
T KOG1648|consen 746 RLRITDDFAIFFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAERHDCSRLLSSART 800 (813)
T ss_pred ccccCcchhhhhhhHH-HhhHHHHhhcccchHHHHHHHHHHHhhhhhHHHHhcCcc
Confidence 2 346889999999 556667777777899999999999877787777766543
No 3
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-43 Score=387.25 Aligned_cols=308 Identities=49% Similarity=0.822 Sum_probs=285.3
Q ss_pred CCCCCCCCHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHh
Q 006156 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (658)
Q Consensus 323 ~~r~~pl~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~ 402 (658)
..+.+.++.++|......+|++......+.+++++|+-+.+|+++|++++++++|+.+..++...... ..+|...+.+|
T Consensus 142 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW 220 (488)
T KOG2197|consen 142 DNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQW 220 (488)
T ss_pred cCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhh
Confidence 34455589999999988889886666566678999998899999999999999999999999988888 99999999999
Q ss_pred hcCChHHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcch
Q 006156 403 QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (658)
Q Consensus 403 ~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE 482 (658)
......+......+.+....|.+||.||++.+.+|.+.++++...|.+||.+|++|++++||||||+|+++|++.++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 221 SSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 99888776555556677889999999999999999998777899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHH
Q 006156 483 SQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE 562 (658)
Q Consensus 483 ~~aFw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD 562 (658)
.+|||||++||+++..||..++.||+.|+..+..+++..||.||+||++.+....+|||||++++|+|||.++++++||+
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWE 380 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWE 380 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCC
Q 006156 563 VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 631 (658)
Q Consensus 563 ~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e~~~ 631 (658)
++|+..++.+|+++++.|+|....+.|+.+..++++++++++.++.+.|+..++..|+.+..+.....+
T Consensus 381 vlw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~~~ 449 (488)
T KOG2197|consen 381 VLWTDLPSPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQMEE 449 (488)
T ss_pred HHHhcCccchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999988766655443
No 4
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=6.1e-42 Score=342.67 Aligned_cols=288 Identities=28% Similarity=0.496 Sum_probs=242.0
Q ss_pred HHhccccCCCCCCHHHHHHHHHhCCCC--hhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCCh----
Q 006156 334 WTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP---- 407 (658)
Q Consensus 334 W~~~~d~~g~~~~~~~lr~~l~~~GIp--~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~---- 407 (658)
-+..+......++.+++|+ ++..|+| ..+|+.+|+.|||++|.+.+. |.....+++..|..+..+...-+.
T Consensus 12 ~edvl~~~~~~id~kelr~-~~~~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v~epg~~~~ 88 (370)
T KOG4567|consen 12 IEDVLNPADDTIDLKELRK-LCFYGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIVDEPGKKDN 88 (370)
T ss_pred HHHhhccccchhhHHHHHH-HhhcCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhccCcccccc
Confidence 3444444344488999999 6789998 689999999999999977554 466778889999888876432110
Q ss_pred --------------------HHHhhhhhhhhccccccccccCCCCCCcccCCCCC-------------------------
Q 006156 408 --------------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN------------------------- 442 (658)
Q Consensus 408 --------------------~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~------------------------- 442 (658)
.....+-+..+...||++||+||.|...+|+....
T Consensus 89 ~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~g 168 (370)
T KOG4567|consen 89 SKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLG 168 (370)
T ss_pred ccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccc
Confidence 00112223446789999999999999999885311
Q ss_pred hhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcc----------hhhHHHHHHHHHHHhCCCCCCC----chhHH
Q 006156 443 PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------ESQSFWCFVALMERLGPNFNRD----QNGMH 508 (658)
Q Consensus 443 ~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~d----------E~~aFw~f~~lm~~~~~~f~~d----~~gm~ 508 (658)
-......|||..|+..||.+|||||||.|++|||+|+.+ |++||+||+.+|..+++||..+ ..|++
T Consensus 169 l~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~ 248 (370)
T KOG4567|consen 169 LTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIH 248 (370)
T ss_pred hhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchH
Confidence 112235789999999999999999999999999999953 8999999999999999998643 45888
Q ss_pred HHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 006156 509 SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNK 588 (658)
Q Consensus 509 ~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~~ 588 (658)
..+..+..+|+..|-+||+||+..++.+.+|+|||++++++.|||+++|+||||.++++.....|++++|+|+|...|+.
T Consensus 249 ~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 249 FLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRER 328 (370)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhc
Q 006156 589 IMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAG 627 (658)
Q Consensus 589 Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~ 627 (658)
|++. ||+.-++.+++.| +.|+..++..|..|.....
T Consensus 329 il~~--DF~~nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~ 364 (370)
T KOG4567|consen 329 ILEG--DFTVNMKLLQNYP-TTDISKMLAVADSLRDKKH 364 (370)
T ss_pred HHhc--chHHHHHHHhcCC-CCCHHHHHHHHHHHHhccc
Confidence 9965 9999999999998 9999999999999985443
No 5
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-40 Score=354.50 Aligned_cols=252 Identities=26% Similarity=0.411 Sum_probs=218.0
Q ss_pred HHHHHhccccC-------CCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh
Q 006156 331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (658)
Q Consensus 331 ~~~W~~~~d~~-------g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~ 403 (658)
..+|...+..+ .-..-.+++++ ++++|||+++|++||..+.|.+.. ...+..|+++.+.-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~-liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKR-LIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHH-HHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCC
Confidence 45677665543 11244678887 569999999999999999994211 111678888876421
Q ss_pred cCChHHHhhhhhhhhccccccccccCCCCCC-cccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcch
Q 006156 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (658)
Q Consensus 404 ~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE 482 (658)
. +-.....+|+.|+.||+|++ +.|..++..+...|+|||.||+++||++|||||||.+||++|++|++|
T Consensus 191 ~----------~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 E----------KKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred C----------ccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 1 01134579999999999999 899998887899999999999999999999999999999999999889
Q ss_pred hhHHHHHHHHHHHhCCC-CCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHH
Q 006156 483 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 561 (658)
Q Consensus 483 ~~aFw~f~~lm~~~~~~-f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLW 561 (658)
++|||||+.+.+++.+. |..++.|.+....+|+.|++..+|+|+.||+..+++..++++.||+|+|+..+|.+.++|||
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIw 340 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIW 340 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHH
Confidence 99999999999998765 67889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCC
Q 006156 562 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELS 607 (658)
Q Consensus 562 D~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~ 607 (658)
|+++.+ |.++++.+|+|+++.+++.|+++. +..++++++..+.
T Consensus 341 D~~f~e--Gskvlfr~Alai~k~~ee~il~~~-~~~~i~~~~~~~~ 383 (436)
T KOG2058|consen 341 DCLFYE--GSKVLFRVALAILKKHEEEILKED-SSKEILRVLPDLT 383 (436)
T ss_pred HHHHhc--ccHHHHHHHHHHHHHhHHHHhcCC-CHHHHHHHHHHHH
Confidence 999965 789999999999999999999987 8999999998875
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-39 Score=333.65 Aligned_cols=276 Identities=27% Similarity=0.520 Sum_probs=241.1
Q ss_pred CCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhcccc
Q 006156 343 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (658)
Q Consensus 343 ~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~ 422 (658)
..++.++||+ ++++|||...|+.+|+.|+|+.|.++ +-|+...+.++.+|..++.++.......+ ...+..+|
T Consensus 174 ~~id~~~Lr~-l~w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~----~~~d~~rQ 246 (484)
T KOG1092|consen 174 PIIDLEKLRK-LCWNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNGD----EDQDTWRQ 246 (484)
T ss_pred ccccHHHHHH-HccCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCcc----ccCccccc
Confidence 3477888988 78999999999999999999988764 45677888899999999988765433211 22244679
Q ss_pred ccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhc----------------------
Q 006156 423 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------------------- 480 (658)
Q Consensus 423 IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~---------------------- 480 (658)
|..|+.|+.|+.++|..+. -++.+.+||..++.++|-.||+||.+|++.|++.++.
T Consensus 247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999998643 5689999999999999999999999999999998872
Q ss_pred ---chhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHH
Q 006156 481 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKT 557 (658)
Q Consensus 481 ---dE~~aFw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~v 557 (658)
-|++||||+.+|++.+.+||...|+|++.+...|+.|++.+|+.|++||+++|++...|+|||+-++|.||||+..+
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~ 404 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCT 404 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhH
Confidence 18999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccC-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHhhccC
Q 006156 558 MRLWEVLWTHYLS-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGEN 629 (658)
Q Consensus 558 lrLWD~~~~~~~~-~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~----iD~~~lL~~A~~L~~~~~e~ 629 (658)
+||||.++++..| .+||+|||+|.|.+.+++|+ ++||.+++-|++++|.. -+++-+|..|..+......+
T Consensus 405 iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~--e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~~f~da 479 (484)
T KOG1092|consen 405 IRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELM--ENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKSVFSDA 479 (484)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHccc
Confidence 9999999998555 57999999999999999999 45999999999999943 36677788887776655443
No 7
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=6.4e-38 Score=310.91 Aligned_cols=194 Identities=36% Similarity=0.659 Sum_probs=173.2
Q ss_pred hCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhccccccccccCCCCCCc
Q 006156 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 435 (658)
Q Consensus 356 ~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~ 435 (658)
++|||+++|++||+.++|+.+...+ ..+..|+++++++..... ...++|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~----------~~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDK----------SIVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCCh----------hhHHHHhcccCCCCCCch
Confidence 6899999999999999999764422 136889988887543221 124699999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHHhCCC-CCCCchhHHHHHHHH
Q 006156 436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 514 (658)
Q Consensus 436 ~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~~~~~-f~~d~~gm~~~l~~l 514 (658)
+|+....++++.|++||.+|+.+||++||||||++||++|++++.+|++|||||+++|+++..+ |..+..++...+..+
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9998777789999999999999999999999999999999999988999999999999998776 556677899999999
Q ss_pred HHHHHhhChhhhhhhhh-cCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhc
Q 006156 515 SKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 568 (658)
Q Consensus 515 ~~Ll~~~dP~L~~hL~~-~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~ 568 (658)
+.+++..+|+||+||++ .++++..|+++|++++|+++||++.++||||.++.+|
T Consensus 143 ~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 143 DRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 99999999999999996 9999999999999999999999999999999999875
No 8
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=319.78 Aligned_cols=285 Identities=21% Similarity=0.395 Sum_probs=233.1
Q ss_pred HHHh-ccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHH-HHHHHHHhhcCChHHH
Q 006156 333 EWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSE-YENIKRQWQSISPEQA 410 (658)
Q Consensus 333 ~W~~-~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~-Y~~lk~q~~~~~~~q~ 410 (658)
.|++ ++.+|.......++|. ++|.|||+.+|++||....|. ..+-|.+-.........+. ...+-++..
T Consensus 276 vW~~eILpnWe~m~~SrR~re-lWwQGiP~~VRGkvW~laIGN-el~it~elfd~~la~Aker~ak~~aeq~~------- 346 (586)
T KOG2223|consen 276 VWENEILPNWEDMLKSRRVRE-LWWQGIPPSVRGKVWSLAIGN-ELNITYELFDIALARAKEREAKSLAEQMS------- 346 (586)
T ss_pred HHHHHhccchHHHHhhHHHHH-HHHccCChhhcchhhHhhhCc-ccccCHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence 3543 4444444456678887 789999999999999999996 2333443333322222211 222222211
Q ss_pred hhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHH
Q 006156 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV 490 (658)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~ 490 (658)
+.-........+|+.|+.||||+..+|+.+ +|....|..||.+|+.|.||+||||||+.|+|+|++.| |+.+||-||.
T Consensus 347 ~sa~~re~sv~~i~LDisrTfpsl~iFqk~-GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafA 424 (586)
T KOG2223|consen 347 NSAADREASVELIKLDISRTFPSLSIFQKG-GPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFA 424 (586)
T ss_pred cchhhhhcchhheeechhccCcceeeeccC-CchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHH
Confidence 111123455789999999999999999975 68899999999999999999999999999999999999 5999999999
Q ss_pred HHHHHhC--CCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhc
Q 006156 491 ALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 568 (658)
Q Consensus 491 ~lm~~~~--~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~ 568 (658)
+|+++-. ..|..|++.|..++.+|+..++...|+|+.||.+.++.|.+|.+.|+.++|+..+|++..+||||+|.-+
T Consensus 425 NLLdkp~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rd- 503 (586)
T KOG2223|consen 425 NLLDKPCQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRD- 503 (586)
T ss_pred HHhccHHHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeec-
Confidence 9999844 4588899999999999999999999999999999999999999999999999999999999999999855
Q ss_pred cChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 006156 569 LSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGAA 632 (658)
Q Consensus 569 ~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e~~~~ 632 (658)
+..|++..+++||+.++++++ .|||..+.+|+..+|.++..+++...-..+..+...+.++
T Consensus 504 -geeFlfr~~lgIlklyepkLl--~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkws 564 (586)
T KOG2223|consen 504 -GEEFLFRTALGILKLYEPKLL--VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWS 564 (586)
T ss_pred -chHHHHHHHHHHHHHccchHh--hhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHH
Confidence 789999999999999999999 7899999999999999999998887776666654444443
No 9
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=2.5e-37 Score=304.22 Aligned_cols=148 Identities=32% Similarity=0.660 Sum_probs=129.2
Q ss_pred CcEEEEeeCceEEccCccc----cccccceEEEEeeCCceeEEeeecCCCCCCc----------cc-----------cc-
Q 006156 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNSNT----------RL-----------SE- 95 (658)
Q Consensus 42 ~~~llf~Ks~V~vhpt~~~----~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~----------~~-----------~~- 95 (658)
.++|||+|+|||||||++. ++||||+|+|++++++++|+|.|+++..+.. .+ .+
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5899999999999999987 7999999999999999999999988741100 00 00
Q ss_pred -----------------------cccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHH
Q 006156 96 -----------------------KDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (658)
Q Consensus 96 -----------------------~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i~~~~dg~~~P~L~F~~GG~~~fl~~ 152 (658)
.+....++|+|||+|||||++++|+.|||||+|++|||+.+||||||+||.++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 001123479999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCceEEEeCCc-hhHHhhhcccCCCc
Q 006156 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (658)
Q Consensus 153 L~~~~~l~rs~~d~~~~lv~~~~-~~l~~~~s~~~~~~ 189 (658)
|++|+.|.||+.|+++|||++.. +.|+++|+.|++.+
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999976 89999999987664
No 10
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=328.65 Aligned_cols=247 Identities=32% Similarity=0.561 Sum_probs=209.8
Q ss_pred CCCCHHHHHhccccCCCC---CCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhh
Q 006156 327 PPLGSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (658)
Q Consensus 327 ~pl~~~~W~~~~d~~g~~---~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~ 403 (658)
++.....|..+++.++.. ....++++++ +.|||+++|+.||.+++|++++.. .....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHH
Confidence 455677889988887762 5667888855 778999999999999999987653 23455655554322
Q ss_pred cCChHHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchh
Q 006156 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 483 (658)
Q Consensus 404 ~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~ 483 (658)
..... ..+..++|++||.||+|.+..|+.+...+...|++||.+|+++||++||||||++|++|||++|.+|+
T Consensus 248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 11100 01356799999999999999999877665557999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHH--hCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHH
Q 006156 484 QSFWCFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLW 561 (658)
Q Consensus 484 ~aFw~f~~lm~~--~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLW 561 (658)
.|||||++||++ +..+|..++.|++.++.++..+++.++|+||+||...++....|+++||+++|.++||.+.++|||
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriw 400 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIW 400 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999993 566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChhHHHHHHHHHHHHHHHHHhcCC
Q 006156 562 EVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQ 593 (658)
Q Consensus 562 D~~~~~~~~~~f~l~valAiL~~~r~~Il~~~ 593 (658)
|++|++ |..+.+.+++|++...++.++...
T Consensus 401 D~lf~e--g~~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 401 DCLFLE--GSSMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHHHHh--ccHHHHHHHHHHHHhhhhhhhccC
Confidence 999987 457888899999999999888554
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=2.4e-33 Score=280.35 Aligned_cols=212 Identities=33% Similarity=0.608 Sum_probs=168.6
Q ss_pred hhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhccccccccccCCCCCCcccCCC
Q 006156 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 440 (658)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~ 440 (658)
+++|+.||+.|+|+.+ .....|...+.++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP-------------NYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC-------------HHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch-------------hhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 4689999999999865 1111122222221111111122222334557899999999999554444
Q ss_pred CChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHH-HHhCCCCCCCchhHHHHHHHHHHHHH
Q 006156 441 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 519 (658)
Q Consensus 441 ~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm-~~~~~~f~~d~~gm~~~l~~l~~Ll~ 519 (658)
...++..|++||.+|+.++|++||+|||++|++++++++.+|++|||||+++| ......|..+..++...+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 45788999999999999999999999999999999988889999999999999 45666788888899999999999999
Q ss_pred hhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhH-HHHHHHHHHHHHHHHHh
Q 006156 520 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHL-HLYVCVAILKRYRNKIM 590 (658)
Q Consensus 520 ~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f-~l~valAiL~~~r~~Il 590 (658)
.++|+|++||++.++++..|+++|++++|++++|++.++|||| ++.++ .++ ++++|+|||...|++||
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g--~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEG--YKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHC--TTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcC--CCcHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999 55453 355 89999999999999987
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.96 E-value=2.1e-29 Score=262.64 Aligned_cols=261 Identities=21% Similarity=0.416 Sum_probs=219.9
Q ss_pred HHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhh
Q 006156 334 WTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRF 413 (658)
Q Consensus 334 W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~ 413 (658)
|+-+ .|.....++++..+-.||||+.+|+..|+.|.|.. ..++.....|+.+.++......
T Consensus 149 w~hi---~~~~~ktdk~~~llkeggiphslr~~lw~rlsga~----------~kkk~ae~sy~~ilk~~andk~------ 209 (848)
T KOG2222|consen 149 WEHI---DGMELKTDKFEELLKEGGIPHSLRAFLWMRLSGAL----------AKKKDAETSYEDILKACANDKL------ 209 (848)
T ss_pred HHhh---cccccchHHHHHHHHcCCCCcchhHHHHHHhhhhh----------hhhccccccHHHHHHHhccccc------
Confidence 5544 35566778899888789999999999999999972 2223345568887776433211
Q ss_pred hhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHH
Q 006156 414 TKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM 493 (658)
Q Consensus 414 ~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm 493 (658)
..-.||+||+-|+.|++.+|..+++.+...|+|||.+.++..|++||||||.-|++.||++++ |+.|||++..++
T Consensus 210 ----~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaii 284 (848)
T KOG2222|consen 210 ----MIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAII 284 (848)
T ss_pred ----chhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHH
Confidence 123599999999999999999999999999999999999999999999999999999999996 889999999999
Q ss_pred HHhCC-C-CCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccCh
Q 006156 494 ERLGP-N-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSE 571 (658)
Q Consensus 494 ~~~~~-~-f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~ 571 (658)
+.+.+ + |....-|++..-.++..|+.-+.|.|-+-|+.+++........||+|+|...|....++||||.|+.+ |.
T Consensus 285 edilp~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~--g~ 362 (848)
T KOG2222|consen 285 EDILPANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYE--GG 362 (848)
T ss_pred HHhcCchhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheec--Cc
Confidence 98765 5 45566789998899999999999999999999999999999999999999999999999999999944 55
Q ss_pred hHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 006156 572 HLHLYVCVAILKRYRNKIMGE---QMDFDTLLKFINELSGR-IDLDAILRDAE 620 (658)
Q Consensus 572 ~f~l~valAiL~~~r~~Il~~---~~dfdeIlk~l~~l~~~-iD~~~lL~~A~ 620 (658)
--++.+.++||+..++.|... ..+..+|..-+.++|.. -|++.++..|-
T Consensus 363 i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~ 415 (848)
T KOG2222|consen 363 INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAG 415 (848)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHh
Confidence 667889999999999887743 23667888889999865 47888877663
No 13
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=254.40 Aligned_cols=242 Identities=21% Similarity=0.370 Sum_probs=208.3
Q ss_pred HhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhccccccccccCCCCCC
Q 006156 355 FYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSV 434 (658)
Q Consensus 355 ~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~IekDV~RT~~~~ 434 (658)
.++|+|+-+|+.+|.-||++-. .....|..+- +..+. ....|||.|+.|+....
T Consensus 352 a~vdvpp~~R~~iW~aLL~l~e-------------~~~a~y~~ID-k~Ts~------------~tdrqievdiprchQyd 405 (725)
T KOG1093|consen 352 AYVDVPPLYRGFIWAALLQLEE-------------NHTAFYTLID-KGTSH------------STDRQIEVDIPRCHQYD 405 (725)
T ss_pred hccCCChhHhHHHHHHHhcCcc-------------ccchhhhhhh-cCCCC------------cchhhhhcccchhhhcc
Confidence 4799999999999999998721 1233343333 22211 22469999999998776
Q ss_pred cccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHh-cchhhHHHHHHHHHHHhCCC-CCCC-chhHHHHH
Q 006156 435 TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPN-FNRD-QNGMHSQL 511 (658)
Q Consensus 435 ~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~-~dE~~aFw~f~~lm~~~~~~-f~~d-~~gm~~~l 511 (658)
.+.+.+ .+++.|+|+|.+++...|.+-|.||+..+++||++.. .||..||-|+..|.-++..+ |..| ..-++..+
T Consensus 406 ~~lsSp--~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyL 483 (725)
T KOG1093|consen 406 ELLSSP--KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYL 483 (725)
T ss_pred cccCCH--HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Confidence 666654 4789999999999999999999999999999998774 57999999999999998876 5553 45678999
Q ss_pred HHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhc
Q 006156 512 FALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMG 591 (658)
Q Consensus 512 ~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~~Il~ 591 (658)
..|++++.++||+|++||..+|+.+..|+.+||+|+|+++||.+.++.|||-++.++ +.|.+++++||+...|+.++.
T Consensus 484 s~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~--~SFplmi~vAil~~lR~~LLa 561 (725)
T KOG1093|consen 484 SMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGH--SSFPLMIGVAILIQLRDPLLA 561 (725)
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC--CccHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999874 469999999999999999997
Q ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccC
Q 006156 592 EQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGEN 629 (658)
Q Consensus 592 ~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e~ 629 (658)
+ +|.|.+.+|.++| ++|++.+++....++...+.+
T Consensus 562 ~--nfne~illf~d~p-dldId~~Ires~~l~e~tP~s 596 (725)
T KOG1093|consen 562 C--NFNECILLFSDLP-DLDIDVCIRESYHLMETTPKS 596 (725)
T ss_pred C--CchhheeeeccCC-cccHHHHHHHHhhhhhCCCCC
Confidence 7 9999999999999 999999999999999866554
No 14
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.94 E-value=7.7e-26 Score=249.37 Aligned_cols=257 Identities=21% Similarity=0.407 Sum_probs=216.0
Q ss_pred HHHHHhccccCCCC---CCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCCh
Q 006156 331 SEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407 (658)
Q Consensus 331 ~~~W~~~~d~~g~~---~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~ 407 (658)
.+.|++++.. ++. .+.+.+-.. ...|+|..-|+++|.||.--+..+.-.. ..++...--|+.+..+
T Consensus 549 ~~~wek~~e~-~~~~~k~d~ed~~~~-l~~gvprsrrgeiwtflA~q~~~~~~l~---~~kr~~~~p~~~llkq------ 617 (948)
T KOG4436|consen 549 IETWEKILER-TRIKIKKDMEDLHSA-LRTGVPRSRRGEIWTFLAEQHSLNHALP---DKKRPPDFPYKELLKQ------ 617 (948)
T ss_pred HHHHHHHHHH-hhhcccccHHHHHHH-HHccCchhhhHHHHHHHHHHHHHhccCC---cccCCCCCChHHHHHH------
Confidence 3679998766 554 366777764 4899999999999999985322110000 0001111224444443
Q ss_pred HHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHH
Q 006156 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 487 (658)
Q Consensus 408 ~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw 487 (658)
+.++.+.|-.|.-||||+|++|+..-+.++..|.|+|.+|+..+|++|||||.+.++++||+.| +|+.||-
T Consensus 618 --------Lte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afe 688 (948)
T KOG4436|consen 618 --------LTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFE 688 (948)
T ss_pred --------HHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHH
Confidence 4456789999999999999999999999999999999999999999999999999999999999 5999999
Q ss_pred HHHHHHHH--hCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHH
Q 006156 488 CFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 565 (658)
Q Consensus 488 ~f~~lm~~--~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~ 565 (658)
++-.||-. ++..|..|+..++.++++++.+++.+++.||+|++++++.|..|+.+||+|.|+..||.-.|.|++|.++
T Consensus 689 llk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~f 768 (948)
T KOG4436|consen 689 LLKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIF 768 (948)
T ss_pred HHHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHH
Confidence 99999975 4556999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC
Q 006156 566 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI 610 (658)
Q Consensus 566 ~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~i 610 (658)
.. |...++.+++++|..++..|+++. +|++|..|+++...++
T Consensus 769 lq--~tevifK~a~~llsv~k~~l~e~d-n~e~i~d~~k~~~p~~ 810 (948)
T KOG4436|consen 769 LQ--GTEVIFKVALSLLSVHKQLLLEKD-NFEEIVDFLKTTLPKM 810 (948)
T ss_pred hh--ccchhhhhHHHHHHhhHHHHHhhh-hHHHHHHHHHHhhhhh
Confidence 76 678999999999999999999987 9999999998864343
No 15
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=248.77 Aligned_cols=245 Identities=22% Similarity=0.378 Sum_probs=209.5
Q ss_pred HHHHhccccCCCCCCH---HHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 006156 332 EEWTTFLDNEGRVMDS---NALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (658)
Q Consensus 332 ~~W~~~~d~~g~~~~~---~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~ 408 (658)
..|..++.++|+.++. .++++ +.+.|+|.+.|+++|..+.|. ..-...+..+|.++.+....
T Consensus 174 k~W~~~f~~~G~~~~~~qt~~~~K-lv~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G---- 238 (671)
T KOG4347|consen 174 KFWKKYFIKDGPNMNQIQTILLRK-LLYNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG---- 238 (671)
T ss_pred HHHHHHHHHhcccccHHHHHHHHH-HHHHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC----
Confidence 4599999999998765 46777 568999999999999999997 34456778999998876443
Q ss_pred HHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHH
Q 006156 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (658)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~ 488 (658)
+.......|++|..|..|+++-|+.+ ++...|++||.+|++.||++||||-||.+++.+|.++. |+.|||+
T Consensus 239 ------~~~~a~eEIE~Dl~rsLpEhpA~Q~e--~gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafwl 309 (671)
T KOG4347|consen 239 ------KRSVATEEIEPDLGRSLPEHPAFQSE--PGIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFWL 309 (671)
T ss_pred ------CcccccccccCCCCCCCCcchhhhCC--CchhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHHH
Confidence 22334578999999999999999975 46799999999999999999999999999999999984 9999999
Q ss_pred HHHHHHHhCCC-CCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhh
Q 006156 489 FVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTH 567 (658)
Q Consensus 489 f~~lm~~~~~~-f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~ 567 (658)
++.+.+++.+. |....-|......+++.|++...|.|++|+...| ........||+++|-..+|++...||.|+|+.+
T Consensus 310 l~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~e 388 (671)
T KOG4347|consen 310 LSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYE 388 (671)
T ss_pred HHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhc
Confidence 99999998876 4555666666667899999999999999999999 666789999999999999999999999999955
Q ss_pred ccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006156 568 YLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN 604 (658)
Q Consensus 568 ~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~ 604 (658)
|...++-+++||++.+.+.|+.+. |=.+++..+.
T Consensus 389 --G~rvlFqiaLail~~N~~~il~~~-dDge~~~vl~ 422 (671)
T KOG4347|consen 389 --GPRVLFQIALAILKQNAERILSAT-DDGEAMMVLG 422 (671)
T ss_pred --ccHHHHHHHHHHHHhhHHHhcccC-CchHHHHHHH
Confidence 778999999999999999999987 4444444433
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2e-24 Score=231.51 Aligned_cols=265 Identities=25% Similarity=0.352 Sum_probs=204.3
Q ss_pred hhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH---------------------HHhhhhhhhhcc
Q 006156 362 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE---------------------QARRFTKFRERK 420 (658)
Q Consensus 362 ~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~---------------------q~~~~~~~~e~~ 420 (658)
..|+.+|+.+||+.|.+.+. |..-.+..+..|.+++......+.. -..+|-...|..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss--~id~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSS--WIDNLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCchh--HHHHHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 57999999999999976432 2333455566676665433221110 012223334678
Q ss_pred ccccccccCCCCCC-cccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcc------------------
Q 006156 421 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED------------------ 481 (658)
Q Consensus 421 ~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~d------------------ 481 (658)
..|++||.||||.+ .||+.+. .+..|++||..|+.-+|.+||-|||+.++||+++|..-
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f 183 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF 183 (625)
T ss_pred HhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence 99999999999999 8888654 46899999999999999999999999999999998731
Q ss_pred ------------hhhHH--HHHHHHHHHhCC------------CC------------CCCchhHHHHHHHHHHHHHhhCh
Q 006156 482 ------------ESQSF--WCFVALMERLGP------------NF------------NRDQNGMHSQLFALSKLVELLDN 523 (658)
Q Consensus 482 ------------E~~aF--w~f~~lm~~~~~------------~f------------~~d~~gm~~~l~~l~~Ll~~~dP 523 (658)
+.+++ -.|+.+|.--.. +| ....+.+......+..++...|+
T Consensus 184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~ 263 (625)
T KOG1091|consen 184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK 263 (625)
T ss_pred chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence 22223 345555532111 11 11122333444567889999999
Q ss_pred hhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHH-HHHhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006156 524 PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWE-VLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKF 602 (658)
Q Consensus 524 ~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD-~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~ 602 (658)
.|+.||.+.++.+.+|..||+.++|.||||+.+++-+|| +++.+++...++.++++|||..+|+.++.. +...-+++
T Consensus 264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss--~~~tcL~~ 341 (625)
T KOG1091|consen 264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSS--EYQTCLQY 341 (625)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHh--cchhHHHH
Confidence 999999999999999999999999999999999999999 888888888899999999999999999965 56669999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 006156 603 INELSGRIDLDAILRDAEALCICAGENGAA 632 (658)
Q Consensus 603 l~~l~~~iD~~~lL~~A~~L~~~~~e~~~~ 632 (658)
+-++|..+|++.++.+|..+...++..++.
T Consensus 342 Lm~yP~~~Dv~~~iekAl~l~~~~~K~n~~ 371 (625)
T KOG1091|consen 342 LMNYPEIIDVDKFIEKALHLQKLFPKSNAK 371 (625)
T ss_pred HhcCCCcCcHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999998866665543
No 17
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.89 E-value=4e-23 Score=209.89 Aligned_cols=256 Identities=18% Similarity=0.242 Sum_probs=201.7
Q ss_pred CCHHHHHHHHHh-CC-CChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhcccc
Q 006156 345 MDSNALRKRIFY-GG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (658)
Q Consensus 345 ~~~~~lr~~l~~-~G-Ip~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~ 422 (658)
.+.+.|++.-.. +| +..++|+.||+.|+|+--.+-. ...|.+..+ -....+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~-----------~~~~~~~~q---------------~hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD-----------ATSTLTPVQ---------------KHKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc-----------ccccCChhh---------------hCcccce
Confidence 577888874333 44 5889999999999996322211 111111111 1122469
Q ss_pred ccccccCCCCCCcc---cCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHHh-CC
Q 006156 423 IDKDVVRTDRSVTF---FDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERL-GP 498 (658)
Q Consensus 423 IekDV~RT~~~~~~---f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~~-~~ 498 (658)
+..||+|++...+. +. .....+..|..++......+|.+.|.||.+|||..+|+++. |.+|+-....+-... ++
T Consensus 100 V~LDv~RSl~rfppg~p~~-~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrd 177 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKE-LRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRD 177 (395)
T ss_pred EEEehhhhhccCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHH
Confidence 99999999865442 11 11235667778888888899999999999999999999995 999998887777543 33
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhcccccc-HHHHHHHHHHHHhhccChhHHHHH
Q 006156 499 NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVLWTHYLSEHLHLYV 577 (658)
Q Consensus 499 ~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~-~~~vlrLWD~~~~~~~~~~f~l~v 577 (658)
...+++.+...++..+..+++..+|+||+.|++.++.. +|+..|++|||++.+. +..|+|++|.|++..+ -..+|+
T Consensus 178 fM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p--l~piyv 254 (395)
T KOG2595|consen 178 FMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP--LLPIYV 254 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc--chhHHH
Confidence 44566777888999999999999999999999999888 5999999999999987 8999999999998754 478999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCC
Q 006156 578 CVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 631 (658)
Q Consensus 578 alAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e~~~ 631 (658)
+.|++...++.|+++..|..-+..++..+|.++..++++..+-.++.+.+....
T Consensus 255 ~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t~~ 308 (395)
T KOG2595|consen 255 YAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPATLL 308 (395)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChhhh
Confidence 999999999999999888888888999999999999999999877776655444
No 18
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.88 E-value=1.8e-22 Score=219.45 Aligned_cols=233 Identities=25% Similarity=0.436 Sum_probs=192.5
Q ss_pred CHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhccccccc
Q 006156 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 425 (658)
Q Consensus 346 ~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~Iek 425 (658)
...++... ...|||.++|+.+|..+++.-- .... ....+....++....+. ...+| +
T Consensus 134 ~~~~l~~~-~~~gip~~~r~~~W~l~~~~~~--------~~~~---~~~~~l~~~~~~~~~~~----------~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSRR-VLVGIPDELRGLVWQLLLYAVE--------ESLF---DSLDELYRLQLDEPEPH----------ESEII-R 190 (397)
T ss_pred cHHHHHHH-hhccccHHHHHHHHHHhcccHh--------hhhh---hhHHHHHHHhhccCCCc----------hhHHH-h
Confidence 34455553 4799999999999999998510 0000 11111111111111111 12366 9
Q ss_pred cccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHHh-CCCCCCCc
Q 006156 426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERL-GPNFNRDQ 504 (658)
Q Consensus 426 DV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~~-~~~f~~d~ 504 (658)
|+.||+|.+..|....+.+++.|.+||.+|+.|++++||||||..++++++.++. |++|||.++.+|... ...|....
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999877888999999999999999999999999999999999996 999999999999865 34466777
Q ss_pred hhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 006156 505 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 584 (658)
Q Consensus 505 ~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~ 584 (658)
.++...+..+..+++...|.++.|+...++...+|+..|++|+|...++++.+.|+||+++.++ ....+.+++|+++.
T Consensus 270 ~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g--~~i~~~~~~~l~~~ 347 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEG--VSILFRFSLALLKH 347 (397)
T ss_pred CchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhc--hHHHHHHHHHHhhh
Confidence 8899999999999999999999999999999999999999999999999999999999999875 67889999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHhC
Q 006156 585 YRNKIMGEQMDFDTLLKFINEL 606 (658)
Q Consensus 585 ~r~~Il~~~~dfdeIlk~l~~l 606 (658)
..+.++ +.+++.+++++.+.
T Consensus 348 ~~~~~~--~~~~e~~~~~l~~~ 367 (397)
T KOG1102|consen 348 KADDLL--DLDFESLLSYLRVD 367 (397)
T ss_pred hhHHHh--hccHHHHHHHHhcc
Confidence 999999 45899999999774
No 19
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.5e-19 Score=171.18 Aligned_cols=190 Identities=21% Similarity=0.396 Sum_probs=155.3
Q ss_pred HHHHHhccccCCCCC--CHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 006156 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (658)
Q Consensus 331 ~~~W~~~~d~~g~~~--~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~ 408 (658)
..+|..++|++...+ ...+++.+ ++.|||+++|+..|++|.|.+..- .+++..|..+..+ +.
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~r-crkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~-----pG 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPR-CRKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPA-----PG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccch-hhcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCC-----CC
Confidence 356777777644332 23456665 589999999999999999985422 2345555554432 11
Q ss_pred HHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHH
Q 006156 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (658)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~ 488 (658)
.. + -.+-|.+|++|-||++..|.....-+++.|.|+|.+|..|+|+.||||+-.-|++.++..+. +.+||||
T Consensus 139 ~p----~---t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~ 210 (267)
T KOG2221|consen 139 DP----K---TAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWC 210 (267)
T ss_pred CC----c---chhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHH
Confidence 10 1 13589999999999999999887778999999999999999999999999999999999996 8899999
Q ss_pred HHHHHHHhCCC-CCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhh
Q 006156 489 FVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 544 (658)
Q Consensus 489 f~~lm~~~~~~-f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ 544 (658)
|+.+.+++.+. |......++..-.+|..|+++.+|..|.||....+++..|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999998775 566678888888899999999999999999999999999999997
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.47 E-value=1.2e-13 Score=153.93 Aligned_cols=243 Identities=18% Similarity=0.264 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhcccccc
Q 006156 345 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 424 (658)
Q Consensus 345 ~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~Ie 424 (658)
....+|+.+ +.+|+|+-.|-.+|..|+.... . ++ ..-.++|.+++.. +..+++. .+...|.
T Consensus 172 ~s~~~l~e~-Ve~~~p~~frli~~qlLssatd--~-----~q--~~I~e~~sdl~~~----s~~~Ek~-----~~~~~Ir 232 (948)
T KOG4436|consen 172 KSLHKLKEL-VEGGIPMHFRLIRWQLLSSATD--R-----EQ--ALIFEDYSDLAPC----SSQQEKE-----LHIGIIR 232 (948)
T ss_pred hchhhhHHH-HhcCCchHHHHHHHHHhccccc--c-----hh--hHHHHHHHHHhhh----cchhhhh-----HHHHHHH
Confidence 456678885 4999999999999999998622 1 11 1234566666643 3333322 2345899
Q ss_pred ccccCCCCCCcccCCCCCh-------hHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHH--
Q 006156 425 KDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMER-- 495 (658)
Q Consensus 425 kDV~RT~~~~~~f~~~~~~-------~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~-- 495 (658)
.|+.||.+.+.+|.+...- ++..|+|+..+|.....+.|||||-+.+++.+++.+. ++.+|..++.+|..
T Consensus 233 rdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~assv~~~lm~~~r 311 (948)
T KOG4436|consen 233 RDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEEASSVKVQLMILYR 311 (948)
T ss_pred HHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHHHHHHHHHHHHhhc
Confidence 9999999999999987654 6899999999999999999999999999999999994 88999999999986
Q ss_pred hCCCCCCCchhHHHHHHHHHHHHHhhCh-hhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHH
Q 006156 496 LGPNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLH 574 (658)
Q Consensus 496 ~~~~f~~d~~gm~~~l~~l~~Ll~~~dP-~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~ 574 (658)
....|.+.+..+-..+..++...+...| .|+.|+.+..++...+.-.||++.|...||.....++.|++..+ |..+.
T Consensus 312 l~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~e--gllk~ 389 (948)
T KOG4436|consen 312 LRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSE--GLLKR 389 (948)
T ss_pred ccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccc--cHHHH
Confidence 4566888888787888899999999999 99999999999999999999999999999999999999999855 55677
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHh-CCCCC
Q 006156 575 LYVCVAILKRYRNKIMGEQMDFDTLLKFINE-LSGRI 610 (658)
Q Consensus 575 l~valAiL~~~r~~Il~~~~dfdeIlk~l~~-l~~~i 610 (658)
+++.+|++...++.=+. ..|++..+++++. .+++.
T Consensus 390 fr~~ia~~~~~~d~~~~-s~D~EG~~~~~qr~~s~~v 425 (948)
T KOG4436|consen 390 FRDSIAYLHQLRDIELE-SLDMEGMLSYFQRNRSNTV 425 (948)
T ss_pred HhhhHHHHHHHhhhhhh-ccCccccccchhhcccccc
Confidence 79999999333443333 4599999998863 34443
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.46 E-value=3.8e-13 Score=141.16 Aligned_cols=183 Identities=18% Similarity=0.321 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHHhhhhhcCCCcccccCc--chhHHHHHHhcchhhHHHHHHHHHHHhCCC-CCCCchhHHHHHHHHHHHH
Q 006156 442 NPNVHLLRDILLTYSFYNFDLGYCQGMS--DLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLV 518 (658)
Q Consensus 442 ~~~~~~L~~IL~ay~~~np~lGYvQGM~--dlaapLL~v~~dE~~aFw~f~~lm~~~~~~-f~~d~~gm~~~l~~l~~Ll 518 (658)
.+.+..|..++.-|+. +.++.|..... .|+-||+..--+-.+.|-||-.+++++.+. -.++. .-+..|+-||
T Consensus 89 v~vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg----~~Fh~FRLLl 163 (669)
T KOG3636|consen 89 VPVVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG----QIFHLFRLLL 163 (669)
T ss_pred cchhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC----ccchHHHHHH
Confidence 4455678888877764 44555655433 567788877667889999999999987653 22221 2345688999
Q ss_pred HhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHhcCCCC-HH
Q 006156 519 ELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRNKIMGEQMD-FD 597 (658)
Q Consensus 519 ~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~~Il~~~~d-fd 597 (658)
+.++|+|+.||+...++|.+|...||-++|+...+.+.+..+||.++-.. ..-+++|+++-||...+++|++.+.| -+
T Consensus 164 qYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKE 242 (669)
T KOG3636|consen 164 QYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKE 242 (669)
T ss_pred HhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHH
Confidence 99999999999999999999999999999999999999999999999654 23467788889999999999976544 57
Q ss_pred HHHHHHHhCCCCC---CHHHHHHHHHHHHHhhccCC
Q 006156 598 TLLKFINELSGRI---DLDAILRDAEALCICAGENG 630 (658)
Q Consensus 598 eIlk~l~~l~~~i---D~~~lL~~A~~L~~~~~e~~ 630 (658)
|++||+.++|..+ |+.++...|.......++.=
T Consensus 243 e~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~sf 278 (669)
T KOG3636|consen 243 EAIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPESF 278 (669)
T ss_pred HHHHHHHcCchhcccccchhHHHHHHHHhhcChHHh
Confidence 9999999998665 66778888877666555543
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3.8e-09 Score=106.28 Aligned_cols=246 Identities=17% Similarity=0.248 Sum_probs=175.9
Q ss_pred CHHHHHHHHHhCCC---ChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhhhhhhhhcccc
Q 006156 346 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (658)
Q Consensus 346 ~~~~lr~~l~~~GI---p~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~~~~~~e~~~~ 422 (658)
...++|+ +.+.|. .+.+|+.|+..|..-.|... .......|..+..+...
T Consensus 31 elqelkq-larqgywaqshalrgkvyqrlirdipcrt--------vtpdasvysdivgkivg------------------ 83 (559)
T KOG2801|consen 31 ELQELKQ-LARQGYWAQSHALRGKVYQRLIRDIPCRT--------VTPDASVYSDIVGKIVG------------------ 83 (559)
T ss_pred hHHHHHH-HHhcchHHhhhhhhhHHHHHHHhcCCccc--------cCCchhHHHHHHHHHhc------------------
Confidence 4567777 567775 67899999999998777542 12234567666654321
Q ss_pred ccccccCCCCCCcccCCC-------CChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHH
Q 006156 423 IDKDVVRTDRSVTFFDGD-------DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 495 (658)
Q Consensus 423 IekDV~RT~~~~~~f~~~-------~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~ 495 (658)
|--.-+.|-..|..+. +..+....+.||.+.++..|++.+|..+..+++.+|.+.-||+++|---++++..
T Consensus 84 --khsssclplpefvdntqvpsyclnargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilac 161 (559)
T KOG2801|consen 84 --KHSSSCLPLPEFVDNTQVPSYCLNARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILAC 161 (559)
T ss_pred --cCCcccccchhhcccCcCchhhhcCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeee
Confidence 1111111111111100 1223467899999999999999999999999999999998999999877777653
Q ss_pred hCCC---CCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChh
Q 006156 496 LGPN---FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEH 572 (658)
Q Consensus 496 ~~~~---f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~ 572 (658)
-.+. .....-.+...+.+|..|+.++....++.+-...-+.......|-..+|. ++|+-...|++|+|+.+ |.+
T Consensus 162 ndpgrrlidqsflafesscmtfgdlvnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflve--gyk 238 (559)
T KOG2801|consen 162 NDPGRRLIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVE--GYK 238 (559)
T ss_pred cCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeec--chH
Confidence 2221 22223345677788999999998888887776655555566677777764 69999999999999987 558
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006156 573 LHLYVCVAILKRYRNKIMGEQMDF----DTLLKFINELSGRIDLDAILRDAEALC 623 (658)
Q Consensus 573 f~l~valAiL~~~r~~Il~~~~df----deIlk~l~~l~~~iD~~~lL~~A~~L~ 623 (658)
.++++++|||+.+...--.+..+. .+|..|++++..+...++++.+|.+|.
T Consensus 239 vlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 239 VLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 999999999999887655443333 478889999999999999999998764
No 23
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=5.1e-05 Score=85.06 Aligned_cols=84 Identities=36% Similarity=0.638 Sum_probs=74.3
Q ss_pred CCCCCCCCHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHh
Q 006156 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (658)
Q Consensus 323 ~~r~~pl~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~ 402 (658)
+.+..+++.++|...|+++|+..+..++-+++..+||+|.+|++||.+|+|+|+.+++.++|..+....+..|..+..+.
T Consensus 42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 45677888999999999999997666666668889999999999999999999999999999999999999999999876
Q ss_pred hcCC
Q 006156 403 QSIS 406 (658)
Q Consensus 403 ~~~~ 406 (658)
..+.
T Consensus 122 ~~~~ 125 (488)
T KOG2197|consen 122 QMMK 125 (488)
T ss_pred chhh
Confidence 5543
No 24
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=96.98 E-value=0.00022 Score=75.67 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=32.0
Q ss_pred CcccccCcchhHHHHHHhcchhhHHHHHHHHHHH
Q 006156 462 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 495 (658)
Q Consensus 462 lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~ 495 (658)
+|..|||+|+++|+|.-.-||.++||||+++|.+
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6889999999999999888999999999999985
No 25
>PF14961 BROMI: Broad-minded protein
Probab=96.91 E-value=0.0094 Score=71.46 Aligned_cols=170 Identities=18% Similarity=0.299 Sum_probs=116.5
Q ss_pred HHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhh-HHHHHHHHHHHhCCCC-----------CCC---chhHH---
Q 006156 447 LLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ-SFWCFVALMERLGPNF-----------NRD---QNGMH--- 508 (658)
Q Consensus 447 ~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~-aFw~f~~lm~~~~~~f-----------~~d---~~gm~--- 508 (658)
+-.+||.-|..++..-+|. |..-.++.+++++..+.+ +.-.+.+|-..+...| ... .+|++
T Consensus 1085 s~l~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~ 1163 (1296)
T PF14961_consen 1085 SSLHILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVY 1163 (1296)
T ss_pred chhHHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchh
Confidence 3344555555566665664 777778888888754434 4433333333221111 111 13333
Q ss_pred -HHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH
Q 006156 509 -SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHYLSEHLHLYVCVAILKRYRN 587 (658)
Q Consensus 509 -~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~r~ 587 (658)
.-+..++.+|+...|.+|.-|...|..+...|.+|+.-+|=..++|..++.-.=+.+. .|..|.+|+|+|+|+..++
T Consensus 1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil--~G~dyqvY~~VailkHlq~ 1241 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICIL--YGPDYQVYICVAILKHLQP 1241 (1296)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHh--cCccceeehhHHHHHHhhH
Confidence 2345689999999999999999999999999999999999999999888776555553 3678999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 006156 588 KIMGEQMDFDTLLKFINELS-GRIDLDAILRDAE 620 (658)
Q Consensus 588 ~Il~~~~dfdeIlk~l~~l~-~~iD~~~lL~~A~ 620 (658)
.|++.. .-.++.-|+++-+ .-+.+.+-+.-.+
T Consensus 1242 ~ilq~~-q~q~L~~flke~~l~gF~~~~~~~yM~ 1274 (1296)
T PF14961_consen 1242 EILQHT-QTQDLQVFLKEEALRGFRVSDYLEYME 1274 (1296)
T ss_pred HHHHhh-hhchHHHHhhhccccceeHHhHHHHHH
Confidence 999765 4456777777754 2345544443333
No 26
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=59.37 E-value=65 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=42.5
Q ss_pred ccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCC--cCCceEe
Q 006156 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (658)
Q Consensus 64 i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i~~~~dg~--~~P~L~F 141 (658)
.+|.|.|.+.. -.+.|+|+.... .. ..+|++.+|..+++.|++..--=+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d~--~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTEDR--KPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETTC--SSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecCC--ceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 45999997542 237888864332 11 36799999999999999766556778888773 3455666
Q ss_pred e
Q 006156 142 Y 142 (658)
Q Consensus 142 ~ 142 (658)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 4
No 27
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=53.02 E-value=14 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.6
Q ss_pred eeeeCCCeeEEEEecCC-CCceEEEEEeCCCC
Q 006156 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (658)
Q Consensus 104 ~~v~ls~i~si~~~~p~-~g~~~~i~~~~dg~ 134 (658)
..|||++|-.|..++|. .+.+|+.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999996 77899999998865
No 28
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=48.72 E-value=5.9 Score=43.80 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=75.2
Q ss_pred cccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHHHHHHHHHhCCCCC
Q 006156 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPNFN 501 (658)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~f~~lm~~~~~~f~ 501 (658)
.|..|++.|++ +..+....++. |.+|..+|+++||| +.++.+ .+...+.
T Consensus 2 ~~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~---------------------~~~~~~~ 50 (397)
T KOG1102|consen 2 EIDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS---------------------KSDGFQS 50 (397)
T ss_pred CCCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh---------------------ccccccc
Confidence 56778888877 32222211122 89999999999999 666655 2222222
Q ss_pred CCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHhhc
Q 006156 502 RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWTHY 568 (658)
Q Consensus 502 ~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~~~ 568 (658)
.+...................+.-..|+...+ .....+..|..-.|..........++||.+..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (397)
T KOG1102|consen 51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEG 116 (397)
T ss_pred CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhh
Confidence 22222222222334445566677778888888 7778888999999999888999999999988653
No 29
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=34.50 E-value=56 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhccCCC
Q 006156 594 MDFDTLLKFINELSGRIDLDAILRDAEALCICAGENGA 631 (658)
Q Consensus 594 ~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e~~~ 631 (658)
|+|.|+.++++.+ ++++++ .-|..||..++.++-
T Consensus 2 msf~Evk~lLk~~--NI~~~~--~yA~~LFq~~D~s~~ 35 (51)
T PF14788_consen 2 MSFKEVKKLLKMM--NIEMDD--EYARQLFQECDKSQS 35 (51)
T ss_dssp BEHHHHHHHHHHT--T----H--HHHHHHHHHH-SSSS
T ss_pred CCHHHHHHHHHHH--ccCcCH--HHHHHHHHHhcccCC
Confidence 6899999999998 466666 568889998887663
No 30
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=29.79 E-value=3.1e+02 Score=23.34 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=31.0
Q ss_pred cccccceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEE
Q 006156 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYII 127 (658)
Q Consensus 61 ~d~i~G~l~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i 127 (658)
.+.-+|+|.|.+. ++-+.+.|.|-+..+. .-..+.|.-.|..-.++.+...|.=|+.
T Consensus 12 pd~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~L 69 (85)
T PF04683_consen 12 PDPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYVL 69 (85)
T ss_dssp E-SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEEE
T ss_pred ECCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEEE
Confidence 3558899999984 5789999999665210 1112334446666666655556655553
No 31
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=1.4e+02 Score=28.22 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=21.1
Q ss_pred CeeEEEEecCCCCceEEEEEe---CCCCcCCceEe
Q 006156 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (658)
Q Consensus 110 ~i~si~~~~p~~g~~~~i~~~---~dg~~~P~L~F 141 (658)
-+..|-++.| .|.+-+|..- .||..+|.||+
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4556777777 3444444433 49999999999
No 32
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=25.43 E-value=95 Score=32.78 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=43.0
Q ss_pred hhhhhhhcCCCchhhHhHhhhhhcccccc----HHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 006156 525 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKRY 585 (658)
Q Consensus 525 L~~hL~~~~~~~~~f~~rW~ltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~ 585 (658)
+|.||+++-=.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-+.=|+++|+...+
T Consensus 162 IyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTm 226 (323)
T cd01047 162 IYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATM 226 (323)
T ss_pred HHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhh
Confidence 57888887555556689999999999987 66677777777754334445556777766543
No 33
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=25.20 E-value=3.3e+02 Score=23.39 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=47.5
Q ss_pred EEEEeeCceEEccCcccc-ccccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCC
Q 006156 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (658)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~-d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (658)
.++|..++|-++--..+. ..-.|.|.|+-+ .|-|++..+.. .. ..++||++|..+....-.++
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsH----Rliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLTSH----RLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEESS----EEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEEee----EEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 789999999998766444 456899999844 78898755432 11 36899999999976655443
Q ss_pred -ceEEEEEeC
Q 006156 123 -WQYIIVVLS 131 (658)
Q Consensus 123 -~~~~i~~~~ 131 (658)
..=|++.++
T Consensus 79 sSpKI~l~l~ 88 (89)
T PF11605_consen 79 SSPKIILHLK 88 (89)
T ss_dssp SS-EEEEEES
T ss_pred CCCeEEEEec
Confidence 223555543
No 34
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=23.03 E-value=1.1e+02 Score=32.43 Aligned_cols=61 Identities=10% Similarity=0.187 Sum_probs=41.3
Q ss_pred hhhhhhhcCCCchhhHhHhhhhhcccccc----HHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 006156 525 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKRY 585 (658)
Q Consensus 525 L~~hL~~~~~~~~~f~~rW~ltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAiL~~~ 585 (658)
+|.||+++-=.-.+-.|+||-.|.-.|+- |..++|-+--+|.+..+.-+.=|+++|+...+
T Consensus 172 IyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaTm 236 (337)
T TIGR02029 172 IYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYSTM 236 (337)
T ss_pred HHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 57888887555556689999999999987 56667766666643233344555666665543
No 35
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.74 E-value=1.2e+02 Score=32.42 Aligned_cols=60 Identities=7% Similarity=0.131 Sum_probs=40.6
Q ss_pred hhhhhhhcCCCchhhHhHhhhhhcccccc----HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 006156 525 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 584 (658)
Q Consensus 525 L~~hL~~~~~~~~~f~~rW~ltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAiL~~ 584 (658)
+|.||+++--.-.+-.|+||-.|.-.|+- |..++|-+-.++.+..+.-+.=||++|+...
T Consensus 178 IyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaT 241 (351)
T CHL00185 178 IYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFAT 241 (351)
T ss_pred HHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 57888887555556689999999999987 5666776666664322333445566666554
No 36
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=21.23 E-value=46 Score=21.84 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=11.7
Q ss_pred CcccccCcchhHHHHH
Q 006156 462 LGYCQGMSDLLSPILF 477 (658)
Q Consensus 462 lGYvQGM~dlaapLL~ 477 (658)
-||+||+.|.+--.|.
T Consensus 3 sgyiqgipdflkgylh 18 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYLH 18 (31)
T ss_pred cccccccHHHHHHHHh
Confidence 3899999887765443
No 37
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.11 E-value=1.3e+02 Score=32.28 Aligned_cols=60 Identities=7% Similarity=0.197 Sum_probs=40.1
Q ss_pred hhhhhhhcCCCchhhHhHhhhhhcccccc----HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 006156 525 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 584 (658)
Q Consensus 525 L~~hL~~~~~~~~~f~~rW~ltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAiL~~ 584 (658)
+|.||+++-=.-.+-.|+||-.|.-.|+- |..++|-+-.++.+..+.-+.=|+++|+...
T Consensus 178 IyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfaT 241 (357)
T PLN02508 178 IYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVT 241 (357)
T ss_pred HHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 57888887555556689999999999987 5666666666664322333455566666543
No 38
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=20.07 E-value=1e+02 Score=33.10 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=41.1
Q ss_pred hhhhhhhcCCCchhhHhHhhhhhcccccc----HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 006156 525 LHNYFKQNDCLNYFFCFRWVLIQFKREFE----YEKTMRLWEVLWTHYLSEHLHLYVCVAILKR 584 (658)
Q Consensus 525 L~~hL~~~~~~~~~f~~rW~ltlF~ref~----~~~vlrLWD~~~~~~~~~~f~l~valAiL~~ 584 (658)
+|.||+++-=.-.+-.|+||-.|.-.|+- |..++|-|-.++.+..+.-+.=||++|+...
T Consensus 182 IyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaT 245 (355)
T PRK13654 182 IYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFAT 245 (355)
T ss_pred HHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhh
Confidence 47888887545556689999999999987 5667777766664423334555666676654
Done!