Query 006156
Match_columns 658
No_of_seqs 316 out of 1684
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 2.4E-50 8.3E-55 439.0 24.6 287 330-630 7-386 (396)
2 2qfz_A TBC1 domain family memb 100.0 4.3E-50 1.5E-54 430.2 22.7 287 330-630 25-340 (345)
3 2qq8_A TBC1 domain family memb 100.0 4.8E-50 1.6E-54 427.7 22.9 288 331-626 21-312 (334)
4 3qye_A TBC1 domain family memb 100.0 5.2E-49 1.8E-53 419.4 14.4 271 330-622 29-307 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.1E-47 7.3E-52 403.4 15.1 261 331-622 5-274 (310)
6 4hl4_A TBC1 domain family memb 100.0 3.2E-45 1.1E-49 383.5 16.7 266 331-628 20-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.5E-39 8.7E-44 337.2 19.0 254 333-628 28-288 (294)
8 2cay_A VPS36 PH domain, vacuol 95.8 0.027 9.3E-07 51.8 8.3 103 44-162 30-137 (145)
9 2hth_B Vacuolar protein sortin 94.6 0.27 9.2E-06 44.8 11.1 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 87.7 1.7 5.7E-05 37.6 7.5 62 66-145 22-83 (108)
11 1y5o_A TFB1, RNA polymerase II 22.9 2.9E+02 0.0098 23.8 7.6 55 63-131 11-65 (115)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=2.4e-50 Score=438.96 Aligned_cols=287 Identities=24% Similarity=0.484 Sum_probs=252.5
Q ss_pred CHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHH
Q 006156 330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (658)
Q Consensus 330 ~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q 409 (658)
+.++|+++++.+. .++.++||+. +++|||+.+|+.||+.|+|++|.+.+ +|+...+.++..|..++++|......
T Consensus 7 R~~kw~~lL~~~~-~~d~~~Lr~l-~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~- 81 (396)
T 1fkm_A 7 RISKFDNILKDKT-IINQQDLRQI-SWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHS- 81 (396)
T ss_dssp HHHHHHHHHSSCS-BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCS-
T ss_pred HHHHHHHHHcCCC-CCCHHHHHHH-HHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCc-
Confidence 3579999998753 4789999994 67899999999999999999998754 56778888999999999987642111
Q ss_pred HhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhc---------
Q 006156 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 480 (658)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~--------- 480 (658)
...+..++|++||.||+|++++|+. ..+++.|+|||.+|+.+||++||||||++|++|||+++.
T Consensus 82 -----~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~ 154 (396)
T 1fkm_A 82 -----RDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQI 154 (396)
T ss_dssp -----THHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGG
T ss_pred -----ccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcccccc
Confidence 1223457999999999999999986 457899999999999999999999999999999999862
Q ss_pred ---------c----------hhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHh
Q 006156 481 ---------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCF 541 (658)
Q Consensus 481 ---------d----------E~~aFw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~ 541 (658)
+ |++|||||++||+++..+|..++.|+...+..++.||+..+|+||+||++.++.+.+|++
T Consensus 155 ~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~ 234 (396)
T 1fkm_A 155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAF 234 (396)
T ss_dssp GGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHH
T ss_pred ccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 2 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccHHHHHHHHHHHHhhc---------------------------------------------------c-
Q 006156 542 RWVLIQFKREFEYEKTMRLWEVLWTHY---------------------------------------------------L- 569 (658)
Q Consensus 542 rW~ltlF~ref~~~~vlrLWD~~~~~~---------------------------------------------------~- 569 (658)
+||+++|+++||+++++||||++|+++ .
T Consensus 235 rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 314 (396)
T 1fkm_A 235 RWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVE 314 (396)
T ss_dssp HHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999987 1
Q ss_pred --------C-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHhhccCC
Q 006156 570 --------S-EHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAEALCICAGENG 630 (658)
Q Consensus 570 --------~-~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~----iD~~~lL~~A~~L~~~~~e~~ 630 (658)
+ ..|++|+|+|||..+|+.||+ +||++++++|+++|.. .|++.++.+|..++.....+.
T Consensus 315 ~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~--~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~ 386 (396)
T 1fkm_A 315 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLME--MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT 386 (396)
T ss_dssp --------CHHHHHHHHHHHHHHHTHHHHTT--CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC---
T ss_pred cchhccccchHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccH
Confidence 1 479999999999999999995 5999999999999864 589999999999988876654
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=4.3e-50 Score=430.17 Aligned_cols=287 Identities=25% Similarity=0.474 Sum_probs=248.8
Q ss_pred CHHHHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHH
Q 006156 330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (658)
Q Consensus 330 ~~~~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q 409 (658)
+.++|.++++.+ .++.++||+. +++|||+.+|+.||+.|+|++|.+. ++|....+.++..|..++++|......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l-~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRL-SWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHH-HTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHH-HHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 468999999754 4789999995 5799999999999999999998764 4677788889999999999886532211
Q ss_pred HhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhc---------
Q 006156 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 480 (658)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~--------- 480 (658)
...+..++|++||.||+|+ ++|+.+ .+++.|++||.+|+.+||++||||||++|++|||+++.
T Consensus 100 -----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~ 171 (345)
T 2qfz_A 100 -----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC----
T ss_pred -----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccc
Confidence 1224567999999999999 999864 46789999999999999999999999999999999874
Q ss_pred ---------------chhhHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhh
Q 006156 481 ---------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVL 545 (658)
Q Consensus 481 ---------------dE~~aFw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~l 545 (658)
+|++|||||+++|+++.++|..+++|+...+..++.|++..+|+||+||++.++.+.+|+++||+
T Consensus 172 ~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~ 251 (345)
T 2qfz_A 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMN 251 (345)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 38999999999999998899999999999999999999999999999999999999999999999
Q ss_pred hhccccccHHHHHHHHHHHHhhccCh-hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 006156 546 IQFKREFEYEKTMRLWEVLWTHYLSE-HLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGR----IDLDAILRDAE 620 (658)
Q Consensus 546 tlF~ref~~~~vlrLWD~~~~~~~~~-~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~----iD~~~lL~~A~ 620 (658)
++|+++||+++++||||++++++.+. .|++++|+|+|..+++.||.+. |+++++++++++|.. .|++.++..|.
T Consensus 252 ~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~-d~~~il~~L~~~p~~~~~~~di~~ll~~A~ 330 (345)
T 2qfz_A 252 NLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK-DFQELLLFLQNLPTAHWDDEDISLLLAEAY 330 (345)
T ss_dssp TTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHcCCCcCCchhHHHHHHHHHH
Confidence 99999999999999999999986543 4899999999999999999754 999999999999865 37999999999
Q ss_pred HHHHhhccCC
Q 006156 621 ALCICAGENG 630 (658)
Q Consensus 621 ~L~~~~~e~~ 630 (658)
.|..+...+.
T Consensus 331 ~l~~~~~~~~ 340 (345)
T 2qfz_A 331 RLKFAFADAP 340 (345)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHhhH
Confidence 9999886554
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-50 Score=427.72 Aligned_cols=288 Identities=20% Similarity=0.379 Sum_probs=239.8
Q ss_pred HHHHH-hccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHH
Q 006156 331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (658)
Q Consensus 331 ~~~W~-~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q 409 (658)
..+|. .++.+++...+.+++|+ ++++|||+++|+.||+.|+|++ +..+.+.+..+.++.++.|..+..++.......
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~-l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRD-LWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHH-HHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHH-HHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 57898 58888888888899998 5689999999999999999985 466777777777777777776655432211110
Q ss_pred H-hhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHH
Q 006156 410 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (658)
Q Consensus 410 ~-~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~ 488 (658)
. .......+..++|++||.||+|++++|.. .+++++.|++||.+|+.+||++||||||++||++||+++ +|++||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~ 176 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIA 176 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHH
Confidence 0 00011234567999999999999999986 356789999999999999999999999999999999998 59999999
Q ss_pred HHHHHHHhC--CCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHh
Q 006156 489 FVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 566 (658)
Q Consensus 489 f~~lm~~~~--~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~ 566 (658)
|+++|+++. .+|..+++++...+..++.|++..+|+||+||++.++.+.+|+++||+|+|+++||+++++||||++|+
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 177 FSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999998753 457778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 006156 567 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICA 626 (658)
Q Consensus 567 ~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~ 626 (658)
+ |..|++++|+|||..+++.|++ +|+++++++++++|..+|++.++..|..|..+.
T Consensus 257 e--g~~~l~~valaiL~~~~~~Ll~--~d~~~il~~L~~lp~~~d~~~l~~~a~~l~~~~ 312 (334)
T 2qq8_A 257 D--GEEFLFRTALGILKLFEDILTK--MDFIHMAQFLTRLPEDLPAEELFASIATIQMQS 312 (334)
T ss_dssp H--CHHHHHHHHHHHHHHTHHHHHT--CCHHHHHHHHHSCCTTCCHHHHHHHHHHCCCEE
T ss_pred c--CCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHhCCCcCCHHHHHHHHHHccCcH
Confidence 7 5689999999999999999995 499999999999999999999999999876543
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=5.2e-49 Score=419.45 Aligned_cols=271 Identities=20% Similarity=0.401 Sum_probs=235.9
Q ss_pred CHHHHHhccccCCC---CCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 006156 330 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406 (658)
Q Consensus 330 ~~~~W~~~~d~~g~---~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~ 406 (658)
+.++|+++++.+|+ ..+.+++++++ ++|||+++|+.||++|+|++++.++..++ .......|..+.+++.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence 56889999998887 35789999855 79999999999999999986533221111 1234567888776432
Q ss_pred hHHHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHH
Q 006156 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (658)
Q Consensus 407 ~~q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aF 486 (658)
...++|++||+||+|++++|..+.+++++.|++||.+|+.+||++||||||++|+++||+++ +|++||
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 22368999999999999999998889999999999999999999999999999999999999 599999
Q ss_pred HHHHHHHHHh--CCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHH
Q 006156 487 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVL 564 (658)
Q Consensus 487 w~f~~lm~~~--~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~ 564 (658)
|||+++|+++ ..+|..++.++..++..++.|++..+|+||+||++.++.+.+|+++||+|+|+++||++.++||||++
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 9999999874 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 006156 565 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRI---DLDAILRDAEAL 622 (658)
Q Consensus 565 ~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~i---D~~~lL~~A~~L 622 (658)
+++ |..|++++|+|||..+++.|+++. +++++++++++...++ |++.++.+|..+
T Consensus 250 l~~--g~~~l~~valaiL~~~~~~ll~~~-~~~~il~~l~~~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 250 FLQ--GTEVIFKVALSLLGSHKPLILQHE-NLETIVDFIKSTLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHH--CTTHHHHHHHHHHHHTHHHHHTCC-SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC
T ss_pred HHC--CcHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHhC
Confidence 988 557999999999999999999765 9999999999954456 678888888554
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-47 Score=403.41 Aligned_cols=261 Identities=23% Similarity=0.407 Sum_probs=229.1
Q ss_pred HHHHHhccccCCCCC--CHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 006156 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (658)
Q Consensus 331 ~~~W~~~~d~~g~~~--~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~ 408 (658)
.++|.++++++++.. +.++++++ +++|||+++|+.||+.|+|+.+. ....+.|..+..+.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l-~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTL-VKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHH-HHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHH-HHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 468999988766553 56789985 47999999999999999998652 12345677765431
Q ss_pred HHhhhhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHHHH
Q 006156 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (658)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aFw~ 488 (658)
....++|++||.||+|++++|..+.+.+++.|++||.+|+.+||++||||||++||++||+++ +|++||||
T Consensus 67 --------~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 67 --------SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp --------CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred --------CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 123468999999999999999988888999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHH--hCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHHh
Q 006156 489 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLWT 566 (658)
Q Consensus 489 f~~lm~~--~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~~ 566 (658)
|+++|++ +..+|..+++++...+..++.+++..+|+||+||++.++.+.+|+++||+|+|+++||++.++||||++++
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~ 217 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLC 217 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999987 56678888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-hCCC----CCCHHHHHHHHHHH
Q 006156 567 HYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFIN-ELSG----RIDLDAILRDAEAL 622 (658)
Q Consensus 567 ~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~-~l~~----~iD~~~lL~~A~~L 622 (658)
+ |..+++++|+|||..+++.|++. |+++++++++ .+|. ..|++.++..|..|
T Consensus 218 ~--g~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 218 E--GLNIIFHVALALLKTSKEDLLQA--DFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp H--CTTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred C--CcHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 8 56899999999999999999964 9999999997 5553 35889999999776
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.2e-45 Score=383.52 Aligned_cols=266 Identities=18% Similarity=0.268 Sum_probs=225.0
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHhC-C-CChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChH
Q 006156 331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (658)
Q Consensus 331 ~~~W~~~~d~~g~~~~~~~lr~~l~~~-G-Ip~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~ 408 (658)
.++++..+.. ..++.++||+.+..+ | +|+++|+.||+.|+|+.+..... .|.....
T Consensus 20 ~~~i~~~l~~--~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~~-------- 77 (292)
T 4hl4_A 20 VAEIHQALNS--DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNLR-------- 77 (292)
T ss_dssp HHHHHHHHTS--SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTHH--------
T ss_pred HHHHHHHHcC--CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhhc--------
Confidence 3556666643 347899999976543 3 79999999999999998765321 1111000
Q ss_pred HHhhhhhhhhccccccccccCCCCCCcccCCC--CChhHHHHHHHHHhhhhhcCCCcccccCcchhHHHHHHhcchhhHH
Q 006156 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (658)
Q Consensus 409 q~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~--~~~~~~~L~~IL~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~aF 486 (658)
...+..++|++||.||+|+++.|..+ ....++.|++||.+|+.+||++|||||||+||++||+++ +|++||
T Consensus 78 ------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 78 ------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp ------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred ------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 11234579999999999999888642 245678899999999999999999999999999999998 599999
Q ss_pred HHHHHHHHHhCC-CCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhcccccc-HHHHHHHHHHH
Q 006156 487 WCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFE-YEKTMRLWEVL 564 (658)
Q Consensus 487 w~f~~lm~~~~~-~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~-~~~vlrLWD~~ 564 (658)
|||+++|++..+ .|..+..++..++..++.+++..+|+||+||++.++. .+|+++||+|+|+++++ ++.++||||++
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~ 229 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFF 229 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 999999997554 4677788999999999999999999999999999995 68999999999999996 99999999999
Q ss_pred HhhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcc
Q 006156 565 WTHYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 628 (658)
Q Consensus 565 ~~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e 628 (658)
|++ +..+++++|+|||..+++.||++..++++++.+++++|..+|++.++.+|..|+.+.+.
T Consensus 230 l~~--g~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 230 LAC--HPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPP 291 (292)
T ss_dssp HHS--CTTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHHHSCC
T ss_pred HHc--CCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 988 45799999999999999999988778999999999999999999999999999997764
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=337.18 Aligned_cols=254 Identities=15% Similarity=0.209 Sum_probs=209.8
Q ss_pred HHHhccccCCCCCCHHHHHHHHHhCCCChhhhHHHHHHHhCCCCCCCCHHHHHHHHHhhHHHHHHHHHHhhcCChHHHhh
Q 006156 333 EWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARR 412 (658)
Q Consensus 333 ~W~~~~d~~g~~~~~~~lr~~l~~~GIp~~lR~~vW~~LLg~~~~~ss~~er~~~~~~~~~~Y~~lk~q~~~~~~~q~~~ 412 (658)
..+.++ ++..++.++||+.+++||||+.+|+.||+.|+|+.|.+++. |+.+.++++++|++++++..
T Consensus 28 ~~~~ll--~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~--------- 94 (294)
T 3qwl_A 28 SLEILL--KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALK--------- 94 (294)
T ss_dssp HHHHHT--TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHh--cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhh---------
Confidence 355555 36789999999987767799999999999999999988654 78889999999999998732
Q ss_pred hhhhhhccccccccccCCCCCCcccCCCCChhHHHHHHHH-------HhhhhhcCCCcccccCcchhHHHHHHhcchhhH
Q 006156 413 FTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDIL-------LTYSFYNFDLGYCQGMSDLLSPILFVMEDESQS 485 (658)
Q Consensus 413 ~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL-------~ay~~~np~lGYvQGM~dlaapLL~v~~dE~~a 485 (658)
..++|+.+..+ ...-+...+ .+| ..+++. ++|||++|++++++++.+|++|
T Consensus 95 ------~~r~I~~~tP~--------------~~vfl~~~~~~~~~l~~~~-~~~~~~-~~~~~~~Iaa~ll~l~~~E~dA 152 (294)
T 3qwl_A 95 ------VVRFVSDATPQ--------------AEVYLRMYQLESGKLPRSP-SFPLEP-DDEVFLAIAKAMEEMVEDSVDC 152 (294)
T ss_dssp ------HTTSCCTTSCH--------------HHHHHHHHHHHHTCCCSST-TSCCCH-HHHHHHHHHHHHHHHCCSHHHH
T ss_pred ------hhhhhhccCch--------------HHHHHHHHHcccccccccc-cCCccc-chhhHHHHHHHHHHHhCCHHHH
Confidence 12455542221 111111111 111 113332 4599999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHhhChhhhhhhhhcCCCchhhHhHhhhhhccccccHHHHHHHHHHHH
Q 006156 486 FWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKREFEYEKTMRLWEVLW 565 (658)
Q Consensus 486 Fw~f~~lm~~~~~~f~~d~~gm~~~l~~l~~Ll~~~dP~L~~hL~~~~~~~~~f~~rW~ltlF~ref~~~~vlrLWD~~~ 565 (658)
||||++||+++..+|..+++|++.++ +.|++.++|+||+||++.++.+.+++.+||+++|+++||+++++||||++|
T Consensus 153 FW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~ 229 (294)
T 3qwl_A 153 YWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVV 229 (294)
T ss_dssp HHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999999999998764 899999999999999999998877777999999999999999999999999
Q ss_pred hhccChhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcc
Q 006156 566 THYLSEHLHLYVCVAILKRYRNKIMGEQMDFDTLLKFINELSGRIDLDAILRDAEALCICAGE 628 (658)
Q Consensus 566 ~~~~~~~f~l~valAiL~~~r~~Il~~~~dfdeIlk~l~~l~~~iD~~~lL~~A~~L~~~~~e 628 (658)
++ +..|++++|+|||..+++.||+.. .+++|+++++++| ..|++.++.+|..|+.+...
T Consensus 230 ~~--~~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp-~~di~~ll~~A~~l~~~~~~ 288 (294)
T 3qwl_A 230 SG--SCKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP-QDSSDAIVSKAIDLWHKHCG 288 (294)
T ss_dssp TT--CSTHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC-STTHHHHHHHHHHHHHHHHC
T ss_pred hC--CchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC-cccHHHHHHHHHHHHHHcCC
Confidence 85 678999999999999999999764 4599999999999 77999999999999887755
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=95.77 E-value=0.027 Score=51.77 Aligned_cols=103 Identities=13% Similarity=0.144 Sum_probs=77.1
Q ss_pred EEEEeeCceEEccCccc-cccccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCC
Q 006156 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (658)
Q Consensus 44 ~llf~Ks~V~vhpt~~~-~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (658)
.+||..++|-++....+ ...-.|.|.|+ .-.|-|+|... . .-..+++||+.|..+...+|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~-~~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------P-TQNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------H-HHHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------C-cceEEEeEhHheeeeeEEcCccc
Confidence 68888889999887644 45677888887 34688987432 1 11348999999999999999888
Q ss_pred ceE-EEEEeC---CCCcCCceEeecCChHHHHHHHHhccccccc
Q 006156 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLVRS 162 (658)
Q Consensus 123 ~~~-~i~~~~---dg~~~P~L~F~~GG~~~fl~~L~~~~~l~rs 162 (658)
+.. |++..+ .|...--|-|..||..+|.+.|.+-+.-.+.
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~~ 137 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENILT 137 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHH
Confidence 654 666775 4566788999999999999999875544443
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.60 E-value=0.27 Score=44.84 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=72.1
Q ss_pred EEEEeeCceEEccCccccccccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCc
Q 006156 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (658)
Q Consensus 44 ~llf~Ks~V~vhpt~~~~d~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~ 123 (658)
.+|+..++|-++....+...-.|.|.|+ .-.|-|+.... . . ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~----------~--~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H----------E--CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C----------S--CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C----------c--eEEEEEhHHeeeeeeecccccc
Confidence 5788889999987665556678888887 44688876433 1 1 2478999999999999997764
Q ss_pred -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHh
Q 006156 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (658)
Q Consensus 124 -~~~i~~~~d-------------g~~~P~L~F~~GG~~~fl~~L~~ 155 (658)
.-|++.++. |...--|-|+.||..+|...|.+
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 357777764 33455799999999999999976
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=87.67 E-value=1.7 Score=37.56 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=47.8
Q ss_pred ceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeCCCCcCCceEeecCC
Q 006156 66 GRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGG 145 (658)
Q Consensus 66 G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i~~~~dg~~~P~L~F~~GG 145 (658)
|.|.|... .|+|+|+.. +. ...++++++|...++.||+.--=-+-|++++|.++ .|+|-+++
T Consensus 22 GtL~l~~d----~i~W~p~~~-~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~~ 83 (108)
T 1pfj_A 22 GALYLMAE----RIAWAPEGK-DR------------FTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNES 83 (108)
T ss_dssp CEEEEETT----EEEEECSSS-SS------------CSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCSS
T ss_pred ceEEEEcc----eEEEccCCC-CC------------ceEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCcH
Confidence 99999866 999999554 21 12356899999999999966555678889988766 88898875
No 11
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=22.91 E-value=2.9e+02 Score=23.84 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=40.2
Q ss_pred cccceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEecCCCCceEEEEEeC
Q 006156 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (658)
Q Consensus 63 ~i~G~l~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i~~~~ 131 (658)
-..|.|.|.+...=..|.|+|-.+ + - ..+|+|+.|..++--|.+..-=-+-|+.+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~------------~-~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-D------------K-VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-S------------C-EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-C------------c-cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 467999999888888999999554 2 1 36899999999886655554444545555
Done!