BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006157
(658 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 411/622 (66%), Positives = 456/622 (73%), Gaps = 64/622 (10%)
Query: 57 RSPAKPVYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSG 116
R P KPVYEPGM A+RLT YMY+QQHRPEDNNIEFWRKFVAEYFAPNAKK+WCVSMYGSG
Sbjct: 294 RPPLKPVYEPGMGAQRLTQYMYRQQHRPEDNNIEFWRKFVAEYFAPNAKKRWCVSMYGSG 353
Query: 117 RQATGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNA 176
RQ TGVFPQDVWHCEICNRKPGRGFEAT EVLPRLFKIKYESGTLEELLYVDMPRE QN+
Sbjct: 354 RQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPRESQNS 413
Query: 177 SGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQ 236
SGQIVL+YAKA QESVFE LRVVRDGQLRIVFSPDLKI SWEFCARRHEELIPRRLLIPQ
Sbjct: 414 SGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELIPRRLLIPQ 473
Query: 237 VSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYV 296
VSQLG+AAQKYQ A QNA+++ + PELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYV
Sbjct: 474 VSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYV 533
Query: 297 RCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPS-QQPEDQLQ---- 351
RCLQISEVVNSMKDLIDYSR T TGP+ESLAKFPRRT +S PS QQ DQL+
Sbjct: 534 RCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQASDQLRQQQQ 593
Query: 352 -------------QQQQQQQTVGQNSNSE-SSVQANAMQLATSNGVANVNNSLNPASASS 397
QQQQQQQTV QN+NS+ SS Q MQ SNG VN + N ASAS+
Sbjct: 594 QQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSNG---VNYAFNAASAST 650
Query: 398 TASTIVGLLHQNSMNSRQQNTVNN-ASSPYGGSSVQMPSPGSSNNI----PQAQPNPSPF 452
+ S+I GL+HQNSM R QN N +SPYGG+SVQM SP SS + Q Q N F
Sbjct: 651 STSSIAGLIHQNSMKGRHQNAAYNPPNSPYGGNSVQMQSPSSSGTMVPSSSQQQHNLPTF 710
Query: 453 QSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSGDADPSDSQ 512
QSPT SS+NN S + + + NHM S +SPA +QQ +GE D +
Sbjct: 711 QSPTSSSNNN--NPSQNGIPSVNHMGSTNSPA---MQQ---AGEVD----------GNES 752
Query: 513 SAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLNGGNGLVGN 572
S+VQKIL+E+++ + + S GG MVG GS GND K ++ ++G L+ N
Sbjct: 753 SSVQKILNEILMNNQAHNNS-SGGSMVGHGSFGNDGKGQANVNSSGV---------LLMN 802
Query: 573 GTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARDQSMNHQQD 632
G VNNN GG G GGG+GQS NGI GNNS+MNGRVGM M RD N QQD
Sbjct: 803 GQVNNNNNTNIGGAGGFGGGIGQSMAANGINNINGNNSLMNGRVGM--MVRDP--NGQQD 858
Query: 633 LGNQLLNGLGAVNGFNNLQFDW 654
LGNQL LGAVNGFNN FDW
Sbjct: 859 LGNQL---LGAVNGFNN--FDW 875
>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=adn1 PE=3 SV=1
Length = 391
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 122/285 (42%), Gaps = 55/285 (19%)
Query: 87 NNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQATGVFPQDVWHCEICNRKPGRGFEATVE 146
++I +WR+FV +++ G F ++ + + N++P + FE +
Sbjct: 41 DDIGYWRRFVHDFYT-----------------EKGTFRYNIDYKDSPNQEP-KLFELSYA 82
Query: 147 VLPRLFKIKYESGTLEELLYV-DMPREYQNASGQIVLDYAKAIQESVFEQ----LRVVRD 201
LPR + Y G L+++ ++ +E+ + ++ ++A S+ Q ++V+
Sbjct: 83 ALPRFLYLSY-CGKLKKMSFLLGNTKEFAIPNNGYFVESSRA---SILYQYQGGVQVIVS 138
Query: 202 GQLRIVF--SPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLS 259
G LR F +P LK+ S EF A H E + R L+ S + ++ Q Q+
Sbjct: 139 GHLRAHFFRAPLLKLDSLEFSAVGHSEYLLRELMT-NASLALSQSRPPQNQIQHDGVKSE 197
Query: 260 APELQN-NCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVT 318
P ++ N N + VN+ G +R ++I+E ++ M+DLI ++
Sbjct: 198 DPSSESVNINSSSSLLPDSP-------VNEYGLEPHIMRFMEITETISGMRDLIAFTLAQ 250
Query: 319 GTGPMESLAKFPRRTSGASGFHSPSQQPEDQLQQQQQQQQTVGQN 363
+GP +L KF LQQQ Q Q++ N
Sbjct: 251 RSGPTSALHKF-----------------ATALQQQHQMQKSTSSN 278
>sp|P48383|SAK1_SCHPO Protein sak1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sak1 PE=1 SV=2
Length = 766
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 381 NGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSN 440
+ + N N + + AS A+ IV +++ V +S PY +P GS
Sbjct: 212 SSIQNTNQRVESSPASVNAAAIV-----------RKSAVTPSSDPYNSPPPSIPLLGSQT 260
Query: 441 NI--------PQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPA 492
N+ PQA P PS S SN PPQ SHS++ + S S P S P
Sbjct: 261 NLQLAPSFAAPQAHPLPSHL-----SQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQ 315
Query: 493 LSGEADP 499
S P
Sbjct: 316 FSSSFVP 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,868,127
Number of Sequences: 539616
Number of extensions: 11419834
Number of successful extensions: 128187
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 1839
Number of HSP's that attempted gapping in prelim test: 62917
Number of HSP's gapped (non-prelim): 40488
length of query: 658
length of database: 191,569,459
effective HSP length: 124
effective length of query: 534
effective length of database: 124,657,075
effective search space: 66566878050
effective search space used: 66566878050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)