Query 006157
Match_columns 658
No_of_seqs 144 out of 187
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 61.1 1.9 6.4E-05 45.1 0.3 11 17-27 380-390 (449)
2 4b8c_D Glucose-repressible alc 44.5 5.6 0.00019 45.0 0.7 12 325-336 429-440 (727)
3 3iot_A Maltose-binding protein 27.5 33 0.0011 35.6 3.1 9 18-26 374-382 (449)
4 3osr_A Maltose-binding peripla 23.8 3.4E+02 0.011 30.5 10.6 34 300-333 618-651 (653)
5 1nwd_B GAD, glutamate decarbox 16.5 63 0.0022 22.3 1.6 11 88-98 14-24 (28)
6 1yyb_A Programmed cell death p 15.9 78 0.0027 21.8 2.0 16 12-27 6-21 (27)
7 1w8x_M Protein P30, protein P, 11.0 1.6E+02 0.0054 24.6 2.8 22 421-443 4-25 (83)
8 1uxx_X Xylanase U; carbohydrat 10.3 1.8E+02 0.0063 25.8 3.3 20 203-222 110-129 (133)
9 1uy4_A Endo-1,4-beta-xylanase 9.3 2.1E+02 0.0071 26.0 3.3 19 203-221 125-143 (145)
10 2hew_F Tumor necrosis factor l 8.4 3.7E+02 0.013 25.5 4.5 56 165-235 30-88 (152)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=61.13 E-value=1.9 Score=45.06 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 006157 17 QQQRYLQLQQQ 27 (658)
Q Consensus 17 ~~~~~~~~~~~ 27 (658)
+||.+.|.|||
T Consensus 380 ~~~~~~~~~~~ 390 (449)
T 3iot_A 380 AFESLKSFQQQ 390 (449)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHhhccc
Confidence 33444444333
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=44.49 E-value=5.6 Score=44.98 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=5.8
Q ss_pred HHhhhhhhcCCC
Q 006157 325 SLAKFPRRTSGA 336 (658)
Q Consensus 325 ALk~yv~~~~~~ 336 (658)
.+.+.+...+++
T Consensus 429 ~i~~~I~~~~pD 440 (727)
T 4b8c_D 429 KLKEQILSYDSD 440 (727)
T ss_dssp HHHHHHHHSCCS
T ss_pred HHHHHHHHcCCC
Confidence 444445555444
No 3
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=27.52 E-value=33 Score=35.61 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 006157 18 QQRYLQLQQ 26 (658)
Q Consensus 18 ~~~~~~~~~ 26 (658)
-..+.+.||
T Consensus 374 ~~~~~~~~~ 382 (449)
T 3iot_A 374 LEKLMKAFE 382 (449)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444333
No 4
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=23.80 E-value=3.4e+02 Score=30.54 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=29.9
Q ss_pred hHHHHHhchHHHHHHhhhcCCChHHHHhhhhhhc
Q 006157 300 QISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRT 333 (658)
Q Consensus 300 QIsEVMSqMKdLM~FSk~n~lSP~EALk~yv~~~ 333 (658)
|+++|=..|.++..+-...+..|-+||++.+++.
T Consensus 618 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (653)
T 3osr_A 618 QMSAFWYAVRTAVINAASGRQTVDEDLKDAQTRI 651 (653)
T ss_dssp THHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5789999999999999988889999999987653
No 5
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=16.51 E-value=63 Score=22.30 Aligned_cols=11 Identities=55% Similarity=1.014 Sum_probs=9.3
Q ss_pred chHHHHHHHHH
Q 006157 88 NIEFWRKFVAE 98 (658)
Q Consensus 88 dIeYWqkFV~E 98 (658)
-|.-|.+||+|
T Consensus 14 mitawkkfvee 24 (28)
T 1nwd_B 14 MITAWKKFVEE 24 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46789999987
No 6
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=15.90 E-value=78 Score=21.85 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.0
Q ss_pred HHhHHHHHHHHHHHHH
Q 006157 12 QMNLLQQQRYLQLQQQ 27 (658)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (658)
-|+-|+++||.++|++
T Consensus 6 ELeair~~rl~~lq~~ 21 (27)
T 1yyb_A 6 ELEALRRQRLAELQAK 21 (27)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4677999999998764
No 7
>1w8x_M Protein P30, protein P, GPP; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=11.04 E-value=1.6e+02 Score=24.61 Aligned_cols=22 Identities=36% Similarity=0.902 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 006157 421 NASSPYGGSSVQMPSPGSSNNIP 443 (658)
Q Consensus 421 ~~~spy~g~~~~~~~~~ss~~~~ 443 (658)
||--||.|+ |+||-|...-|||
T Consensus 4 npqfpyagp-vpipgpaptetmp 25 (83)
T 1w8x_M 4 NPQFPYAGP-VPIPGPAPTETMP 25 (83)
T ss_dssp CSSSCCCSS-CCTTCCCCCCCCC
T ss_pred CCCCCcCCC-CCCCCCCCccccc
Confidence 677899987 9999999988888
No 8
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=10.29 E-value=1.8e+02 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.9
Q ss_pred EEEEEeCCCcceeEEEEeec
Q 006157 203 QLRIVFSPDLKICSWEFCAR 222 (658)
Q Consensus 203 ~LRa~FdpdLKIE~wEF~t~ 222 (658)
.|++.|.-.+.|+||+|...
T Consensus 110 ~l~l~f~G~~nl~~~~f~~~ 129 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFDSN 129 (133)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEcC
Confidence 67788888899999999753
No 9
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=9.30 E-value=2.1e+02 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.2
Q ss_pred EEEEEeCCCcceeEEEEee
Q 006157 203 QLRIVFSPDLKICSWEFCA 221 (658)
Q Consensus 203 ~LRa~FdpdLKIE~wEF~t 221 (658)
.|++.|.-.+.|+||+|.-
T Consensus 125 ~lyl~f~g~~nl~~~~F~~ 143 (145)
T 1uy4_A 125 DIVLVFSGPVNVDNFIFSR 143 (145)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEEe
Confidence 5778888889999999974
No 10
>2hew_F Tumor necrosis factor ligand superfamily member 4; trimer, TNFSF, cytokine; HET: NAG; 1.45A {Mus musculus} SCOP: b.22.1.1 PDB: 2hey_F
Probab=8.41 E-value=3.7e+02 Score=25.46 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=0.0
Q ss_pred EEecCCcce---ecCCCcEEEEeCceEEEEEecCeEEEEEeEEEEEeCCCcceeEEEEeecceeeccccchhhh
Q 006157 165 LYVDMPREY---QNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIP 235 (658)
Q Consensus 165 L~Ld~prE~---vLsNGsI~lEc~KAs~iy~YegS~Vv~~G~LRa~FdpdLKIE~wEF~t~sHeEyIpRs~L~~ 235 (658)
+++..+.|+ ..-|.+++|.|+-.-+++ ||+.|+.+++| +|+.|..+|.+.-..|..
T Consensus 30 fi~ts~~e~~tMkVQnNSviI~CDGfYLis------------LKG~fSqe~sI---~l~YRk~~~plf~~~L~~ 88 (152)
T 2hew_F 30 FISSYKNEYQTMEVQNNSVVIKCDGLYIIY------------LKGSFFQEVKI---DLHFREDHNPISIPMLND 88 (152)
T ss_dssp EEECCSSSCCCSEEETTEEECCBCEEEEEE------------EEEEESSCCCE---EEECCTTSCCEEECCCTT
T ss_pred eEEecccccceEEEecCeEEEecCceEEEE------------EEEeeccccEE---EEEEecCCCccchhhhhc
Done!