Query 006157
Match_columns 658
No_of_seqs 144 out of 187
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 17:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006157.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006157hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uxxx_ b.18.1.10 (X:) Carbohy 19.1 36 0.0026 27.8 3.3 20 203-222 105-124 (125)
2 d1od3a_ b.18.1.10 (A:) Putativ 16.2 45 0.0033 27.2 3.3 19 203-221 112-130 (132)
3 d1nn4a_ c.121.1.1 (A:) Alterna 15.7 13 0.00098 33.1 -0.4 21 590-610 80-103 (159)
4 d2fh1a3 d.109.1.1 (A:629-741) 13.0 21 0.0015 29.3 0.1 39 149-187 12-51 (113)
5 d1ohpa1 d.17.4.3 (A:1-125) Del 13.0 1.8E+02 0.013 21.8 6.0 68 143-218 46-113 (125)
6 d1uy4a_ b.18.1.10 (A:) Putativ 12.9 63 0.0046 26.5 3.3 19 203-221 112-130 (132)
7 d1svya_ d.109.1.1 (A:) Severin 12.8 23 0.0017 28.1 0.4 37 149-187 4-40 (102)
8 d1oh0a_ d.17.4.3 (A:) Delta-5- 12.2 2.8E+02 0.021 20.9 8.5 69 144-218 47-115 (125)
9 d1ggxa_ d.22.1.1 (A:) Red fluo 11.9 3.5E+02 0.025 24.8 8.5 82 137-232 62-149 (219)
10 d3er7a1 d.17.4.24 (A:5-122) Un 11.3 2.6E+02 0.019 23.3 6.7 25 194-218 88-112 (118)
No 1
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=19.14 E-value=36 Score=27.80 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred EEEEEeCCCcceeEEEEeec
Q 006157 203 QLRIVFSPDLKICSWEFCAR 222 (658)
Q Consensus 203 ~LRa~FdpdLKIE~wEF~t~ 222 (658)
+||+.|+-.+.|+||+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 48888988999999999754
No 2
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=16.25 E-value=45 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEEEEeCCCcceeEEEEee
Q 006157 203 QLRIVFSPDLKICSWEFCA 221 (658)
Q Consensus 203 ~LRa~FdpdLKIE~wEF~t 221 (658)
+||+.|+-.+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nld~~~f~~ 130 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSK 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEC
T ss_pred EEEEEEeCCceEEEEEEEe
Confidence 6788888899999999974
No 3
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=15.66 E-value=13 Score=33.09 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=17.9
Q ss_pred CCCCCchhhhh---hhhhhccCCc
Q 006157 590 GGGLGQSAMVN---GIRAAMGNNS 610 (658)
Q Consensus 590 g~g~~~~~~~~---~~~~~~~~n~ 610 (658)
|-|+|.+.++| |||||+.+|.
T Consensus 80 GtG~G~~IaANK~~GIRAa~~~d~ 103 (159)
T d1nn4a_ 80 GTGVGISIAANKFAGIRAVVCSEP 103 (159)
T ss_dssp SSSHHHHHHHHTSTTCCEEECSSH
T ss_pred CCchHHHHHHHhccCceeeeecch
Confidence 66899999999 9999988654
No 4
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.04 E-value=21 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=26.8
Q ss_pred hHHHHHHhhcCcceEEEEe-cCCcceecCCCcEEEEeCce
Q 006157 149 PRLFKIKYESGTLEELLYV-DMPREYQNASGQIVLDYAKA 187 (658)
Q Consensus 149 PRyF~t~FeSGV~~iqL~L-d~prE~vLsNGsI~lEc~KA 187 (658)
||+|+....+|...+..+. +..++...++...+|+|...
T Consensus 12 prLf~~~~~~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~ 51 (113)
T d2fh1a3 12 PRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ 51 (113)
T ss_dssp CEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSC
T ss_pred CEEEEEEcCCCCEEEEEEccCCCHHHCCCCceEEEECCCE
Confidence 7888876667876655542 33455566778888998865
No 5
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=12.98 E-value=1.8e+02 Score=21.81 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=40.3
Q ss_pred EcccchhHHHHHHhhcCcceEEEEecCCcceecCCCcEEEEeCceEEEEEecCeEEEEEeEEEEEeCCCcceeEEE
Q 006157 143 ATVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 218 (658)
Q Consensus 143 It~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLsNGsI~lEc~KAs~iy~YegS~Vv~~G~LRa~FdpdLKIE~wE 218 (658)
.+...|-.||...+. ...++.+. . +....++..+++. ......+|-.+..+|.-...|+.|.||..+.
T Consensus 46 ~G~~~i~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 113 (125)
T d1ohpa1 46 SGTAAIREFYANSLK-LPLAVELT--Q--EVRAVANEAAFAF---IVSFEYQGRKTVVAPIDHFRFNGAGKVVSMR 113 (125)
T ss_dssp ESHHHHHHHHHHHTS-SCCEEEEC--S--CCEEETTEEEEEE---EEEEEETTEEEEECCEEEEEECTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhh-cCCceEEE--E--EEEEecceEEEEE---EEEEecCCceEEEEEEEEEEECCCCeEEEEE
Confidence 345777778887775 33333321 1 1112234444422 2223335788889999999999999998654
No 6
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=12.93 E-value=63 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.4
Q ss_pred EEEEEeCCCcceeEEEEee
Q 006157 203 QLRIVFSPDLKICSWEFCA 221 (658)
Q Consensus 203 ~LRa~FdpdLKIE~wEF~t 221 (658)
.||+.|.-.+.|+||+|.-
T Consensus 112 ~l~l~~~g~~nid~~~F~~ 130 (132)
T d1uy4a_ 112 DIVLVFSGPVNVDNFIFSR 130 (132)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEECCceEEEEEEEe
Confidence 6788888889999999974
No 7
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}
Probab=12.75 E-value=23 Score=28.07 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=21.4
Q ss_pred hHHHHHHhhcCcceEEEEecCCcceecCCCcEEEEeCce
Q 006157 149 PRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKA 187 (658)
Q Consensus 149 PRyF~t~FeSGV~~iqL~Ld~prE~vLsNGsI~lEc~KA 187 (658)
||+|+......++-.+ ++...+...++...+|++.+.
T Consensus 4 pRL~~v~G~~~~~~~e--v~~~~~~L~s~dvfILd~~~~ 40 (102)
T d1svya_ 4 PRLLHISGDKNAKVAE--VPLATSSLNSGDCFLLDAGLT 40 (102)
T ss_dssp CEEEEEECTTSCEEEE--ECSSGGGCBTTSEEEEECSSE
T ss_pred cEEEEEECCCceEEEE--ecCCHHHcCCCCeEEEEcCCE
Confidence 5666654333333322 255566566777888888763
No 8
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=12.16 E-value=2.8e+02 Score=20.89 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=41.7
Q ss_pred cccchhHHHHHHhhcCcceEEEEecCCcceecCCCcEEEEeCceEEEEEecCeEEEEEeEEEEEeCCCcceeEEE
Q 006157 144 TVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 218 (658)
Q Consensus 144 t~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLsNGsI~lEc~KAs~iy~YegS~Vv~~G~LRa~FdpdLKIE~wE 218 (658)
+...|=+||...+..+-.... .+. ..+..++...++. .......+|-.+...|.-...|+.|.||..+.
T Consensus 47 G~~~i~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~d~dGkI~~~~ 115 (125)
T d1oh0a_ 47 GREQIAAFYRQGLGGGKVRAC-LTG---PVRASHNGCGAMP--FRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQ 115 (125)
T ss_dssp HHHHHHHHHHHHHSSSCCEEE-ESS---CCEECSSSEEEEE--EEEEEESSSSEEEEEEEEEEEECTTSCEEEEE
T ss_pred cHHHHHHHHHHHHHhcccceE-EEE---EEEEcCCCEEEEE--EEEEeccccceEEEEEEEEEEECCCCeEEEEE
Confidence 457888899998876644322 221 1122223322222 12233445788889999999999999997653
No 9
>d1ggxa_ d.22.1.1 (A:) Red fluorescent protein (fp583 or dsred(clontech)) {Coral (Discosoma sp.) [TaxId: 86600]}
Probab=11.95 E-value=3.5e+02 Score=24.78 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=56.8
Q ss_pred CCceeeEcccchhHHHHHHhhcCcceEEEEecCCcceecCCCcEEEEeCceEEEEEecCeEEEEEeEEEEE-eCCC----
Q 006157 137 PGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIV-FSPD---- 211 (658)
Q Consensus 137 ~~KqFEIt~~vLPRyF~t~FeSGV~~iqL~Ld~prE~vLsNGsI~lEc~KAs~iy~YegS~Vv~~G~LRa~-Fdpd---- 211 (658)
+.|.|-=--.=||-||+..|..|-.-+ |....-+|-++ .++..|.|++-.++.+-++... |-+|
T Consensus 62 G~r~F~kYP~~i~dyfk~sfp~Gys~e-------Rt~~fEDGGv~----t~~~~isleg~~~~~~~~~~G~nFP~dGPVM 130 (219)
T d1ggxa_ 62 GSKVYVKHPADIPDYKKLSFPEGFKWE-------RVMNFEDGGVV----TVTQDSSLQDGCFIYKVKFIGVNFPSDGPVM 130 (219)
T ss_dssp -CGGGCBCCTTSCCHHHHTTTTCEEEE-------EEEEETTSCEE----EEEEEEEEETTEEEEEEEEEEECCCTTSTTT
T ss_pred ccEEeccCCCCcchHHHhhCCCCeeEE-------EEEEEcCCCEE----EEEEEEEEECCEEEEEEEEEEECCCCCCCcc
Confidence 357777777788999999998887643 22334566633 3566788888777777788777 8765
Q ss_pred -cceeEEEEeecceeeccccch
Q 006157 212 -LKICSWEFCARRHEELIPRRL 232 (658)
Q Consensus 212 -LKIE~wEF~t~sHeEyIpRs~ 232 (658)
-||.-||-++. ..++|.-
T Consensus 131 qkkt~~weps~e---~m~p~dg 149 (219)
T d1ggxa_ 131 QKKTMGWEASTE---RLYPRDG 149 (219)
T ss_dssp TTCEEEECCEEE---EEEEETT
T ss_pred ccccccCCCceE---EEEEeCC
Confidence 78888987763 3456654
No 10
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=11.35 E-value=2.6e+02 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.0
Q ss_pred cCeEEEEEeEEEEEeCCCcceeEEE
Q 006157 194 EQLRVVRDGQLRIVFSPDLKICSWE 218 (658)
Q Consensus 194 egS~Vv~~G~LRa~FdpdLKIE~wE 218 (658)
+|...+.+|+=.+..+.+.||-.++
T Consensus 88 dG~~~~~~G~DiA~l~~~GKI~yL~ 112 (118)
T d3er7a1 88 DGSVFTQDGTDIARLNADGKIVYLA 112 (118)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCcEEEecCcchhhhcCCCcEEeee
Confidence 3567788999999999999998765
Done!