BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006158
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/409 (46%), Positives = 273/409 (66%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G++ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRLDF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWSFVT--EGRDYKVWE 656
D Y A ID KV +K+GP Y+ P+G FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGP-RYDVGAVIPAG-----FVTSAHGNDYAVWE 403
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 272/409 (66%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G++ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRLDF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWSFVTE--GRDYKVWE 656
D Y A ID KV +K+G Y+ P+G FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGS-RYDVGAVIPAG-----FVTSAAGNDYAVWE 403
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
In Complex With Acarbose
Length = 405
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/409 (46%), Positives = 272/409 (66%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G++ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRLDF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWSFVT--EGRDYKVWE 656
D Y A ID KV +K+G Y+ P+G FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGS-RYDVGAVIPAG-----FVTSAHGNDYAVWE 403
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 269/409 (65%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G++ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRLDF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWSFVT--EGRDYKVWE 656
D Y A ID KV +K+G G P FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGSRADVGAVIPA------GFVTSAHGNDYAVWE 403
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 268/409 (65%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G+ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRLDF
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGP----GHYEPPSGSQNWSFVT--EGRDYKVWE 656
D Y A ID KV +K+G G P FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGSRADVGAVIPA------GFVTSAHGNDYAVWE 403
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
Inactive Mutant D180a In Complex With Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/409 (46%), Positives = 271/409 (66%), Gaps = 26/409 (6%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K SG WY + K ++++ G + +WLPPP+ SVS EGYMP LY++
Sbjct: 2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDID 61
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDD 379
+S+YGN ELK ++ H G++ + D+V+NHRCA Y++ G++ IF GRL+W
Sbjct: 62 ASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGP 121
Query: 380 RAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD + G N +G +F AAP+IDH D V++++KEWL WL++++G+D WRL F
Sbjct: 122 HMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLAF 181
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWINAASGTAG 497
RG+ K Y++ T P AV E WD+++ G+ +++QDAHRQ +++W++ G A
Sbjct: 182 ARGYSPEMAKVYIDGTSPSLAVAEVWDNMATGGDGKPNYDQDAHRQNLVNWVDKVGGAAS 241
Query: 498 A---FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWR 554
A FD TTKGIL++A++ E WRL D +GK PGV+GWWP++AVTF++NHDTGSTQ W
Sbjct: 242 AGMVFDFTTKGILNAAVE-GELWRLIDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWP 300
Query: 555 FPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAE 613
FP + MQGYAYILTHPG P +FYDH F+ ++ +I AL+++RKRN I S ++I+ E
Sbjct: 301 FPSDKVMQGYAYILTHPGIPCIFYDHFFNWGFKDQIAALVAIRKRNGITATSALKILMHE 360
Query: 614 RDVYAAIIDEKVAMKLGPGHYEP----PSGSQNWSFVT--EGRDYKVWE 656
D Y A ID KV +K+G Y+ P+G FVT G DY VWE
Sbjct: 361 GDAYVAEIDGKVVVKIGS-RYDVGAVIPAG-----FVTSAHGNDYAVWE 403
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 265/402 (65%), Gaps = 13/402 (3%)
Query: 267 EILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL- 324
++L QGFNWES K +G WY L K ++++ G + +WLPP ++SV+ +GYMP LY+L
Sbjct: 1 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLD 60
Query: 325 SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDD 379
+S+YGN +LK ++ H G+K + D+V+NHR A +++ G++ IF G RL+W
Sbjct: 61 ASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGP 120
Query: 380 RAVVADD-PHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
+ DD P+ G GN +G +F AAP+IDH V+K++ EWL WL+ +IG+DGWR DF
Sbjct: 121 HMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDF 180
Query: 439 VRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMDHNQDAHRQRIIDWIN--AASGT 495
+G+ K Y++ +EP FAV E W SL+Y G+ + NQD HRQ +++W++ G
Sbjct: 181 AKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGP 240
Query: 496 AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF 555
A FD TTKGIL+ A++ E WRL GK PG++GWWP++AVTF++NHDTGSTQ W F
Sbjct: 241 ATTFDFTTKGILNVAVE-GELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWPF 299
Query: 556 PGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKRNKIHCRSRVEIVKAER 614
P R MQGYAYILTHPGTP +FYDH F ++EI+ L+SVR R+ IH S+++I++A+
Sbjct: 300 PSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESKLQIIEADA 359
Query: 615 DVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWE 656
D+Y A ID KV +KLGP + + G DY VWE
Sbjct: 360 DLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWE 401
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 179/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R DFVRG+ V ++ ++ + F VGE W S Y D A Q+II DW
Sbjct: 188 GGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRAK--CPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 179/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R DFVRG+ V ++ ++ + F VGE W S Y D A Q+II DW
Sbjct: 188 GGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRAK--CPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 179/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R DFVRG+ V ++ ++ + F VG+ W S Y D A Q+II DW
Sbjct: 188 GGFRFDFVRGYAPERVNSWMTDSADNSFCVGQLWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRA--KCPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 179/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R +FVRG+ V ++ ++ + F VGE W S Y D A Q+II DW
Sbjct: 188 GGFRFNFVRGYAPERVNSWMTDSADNSFCVGELWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRA--KCPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 179/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R DFVRG+ V ++ ++ + F VGE W S Y D A Q+II DW
Sbjct: 188 GGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NH+
Sbjct: 247 DRA--KCPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHN 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 178/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R FVRG+ V ++ ++ + F VGE W S Y D A Q+II DW
Sbjct: 188 GGFRFGFVRGYAPERVNSWMTDSADNSFCVGELWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRA--KCPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 178/382 (46%), Gaps = 46/382 (12%)
Query: 265 GFEILCQGFNWESHKSG--RWYMELKEKATELSSLGFSVIWLPPP----------TESVS 312
G EI+ QGF+W + WY L+++A +++ GFS IW+P P ++S
Sbjct: 15 GDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGG 74
Query: 313 PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG 372
EGY D +N + RYG+ +L+ + G+K+L DVV NH Y ++ N+
Sbjct: 75 GEGYFWHD-FNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKE--INLPA 131
Query: 373 GRLNW-DDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
G+ W +D A + P+ G++ G + A N H Q V ++ LR++ G
Sbjct: 132 GQGFWRNDCADPGNYPNDCDDGDRFIGGD--ADLNTGHPQ--VYGMFRDEFTNLRSQYGA 187
Query: 432 DGWRLDFVRGFWGGYVKDYL-EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRII-DWI 489
G+R DFVRG+ V ++ ++ + F VG W S Y D A Q+II DW
Sbjct: 188 GGFRFDFVRGYAPERVNSWMTDSADNSFCVGGLWKGPS-EYPNWDWRNTASWQQIIKDWS 246
Query: 490 NAASGTAGAFDVTTKGILHSALDRCEYWRLSDEK----GKPPGVVGWWPSRAVTFIENHD 545
+ A FD K +R + ++D K G P W AVTF++NHD
Sbjct: 247 DRA--KCPVFDFALK-------ERMQNGSIADWKHGLNGNPDPR---WREVAVTFVDNHD 294
Query: 546 TGSTQG------HWRFPGGREMQGYAYILTHPGTPSVFYDHIFS-HYRQEIEALLSVRKR 598
TG + G HW G Q YAYILT PGTP V++DH++ Y I L+ VR+
Sbjct: 295 TGYSPGQNGGQHHWALQDGLIRQAYAYILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRA 354
Query: 599 NKIHCRSRVEIVKAERDVYAAI 620
+ S + + A +
Sbjct: 355 AGVRADSAISFHSGYSGLVATV 376
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 152/334 (45%), Gaps = 53/334 (15%)
Query: 268 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNL 324
++ Q F W+ G W+ ++ K E G S IWLPPP++ +S GY P D ++L
Sbjct: 11 VIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDL 70
Query: 325 S---------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRL 375
+R+G+ +EL ++ H G+K++ DVV+NHR + WN F G
Sbjct: 71 GEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVVINHRAG----GDLEWNPFVGDY 126
Query: 376 NWDDRAVVADDPHFQGRGNKSSGD-------NFHAAPNIDH----SQDFVRKDIKEWLCW 424
W D + VA + + + F P+I H Q ++ K + + +
Sbjct: 127 TWTDFSKVASGKYTANYLDFHPNELHCCDEGTFGGFPDICHHKEWDQYWLWKSNESYAAY 186
Query: 425 LRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQR 484
LR+ IG+DGWR D+V+G+ V+D+L + AVGEYWD+ N DA
Sbjct: 187 LRS-IGFDGWRFDYVKGYGAWVVRDWLNWWGGW-AVGEYWDT----------NVDA---- 230
Query: 485 IIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 544
++ W A A FD + A D L VV P +AVTF+ NH
Sbjct: 231 LLSW--AYESGAKVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANH 288
Query: 545 DTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
DT ++P YA+ILT+ G P +FY
Sbjct: 289 DTDIIWN--KYP------AYAFILTYEGQPVIFY 314
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/335 (30%), Positives = 152/335 (45%), Gaps = 55/335 (16%)
Query: 268 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE---GYMPRDLYNL 324
++ Q F W+ G W+ +++K E G S IW+PP ++ + GY P D ++L
Sbjct: 11 VIMQAFYWDVPSGGIWWDTIRQKIPEWYDAGISAIWIPPASKGMGGAYSMGYDPYDFFDL 70
Query: 325 S---------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRL 375
+R+G+ EL +++N H GMK++ D+V+NHR + WN F
Sbjct: 71 GEYDQKGTVETRFGSKQELVNMINTAHAYGMKVIADIVINHRAG----GDLEWNPFVNDY 126
Query: 376 NWDDRAVVAD--------DPHFQGRGNKSSGDNFHAAPNIDH----SQDFVRKDIKEWLC 423
W D + VA D H SG F P+I H Q ++ + +
Sbjct: 127 TWTDFSKVASGKYTANYLDFHPNELHAGDSG-TFGGYPDICHDKSWDQYWLWASQESYAA 185
Query: 424 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQ 483
+LR+ IG D WR D+V+G+ VKD+L + AVGEYWD+ N DA
Sbjct: 186 YLRS-IGIDAWRFDYVKGYAPWVVKDWLNWWGGW-AVGEYWDT----------NVDA--- 230
Query: 484 RIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIEN 543
+++W A S A FD + A D L VV P +AVTF+ N
Sbjct: 231 -VLNW--AYSSGAKVFDFALYYKMDEAFDNKNIPALVSALQNGQTVVSRDPFKAVTFVAN 287
Query: 544 HDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
HDT ++P YA+ILT+ G P++FY
Sbjct: 288 HDTDIIWN--KYP------AYAFILTYEGQPTIFY 314
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 170/416 (40%), Gaps = 115/416 (27%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTE--SVSPEGYMPRDLYNLS- 325
L Q F W + G+ + L+ A LS +G + +W+PP + S S GY P DLY+L
Sbjct: 5 LMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGE 64
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA------------------ 359
++YG EL+D + H +++ GDVVLNH+
Sbjct: 65 FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRN 124
Query: 360 -----HYQNQNGVWNIFGGRLN----------------WDDRAVVADDPHFQGRG----- 393
YQ + F GR N WD+ ++ F+G G
Sbjct: 125 QETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDW 184
Query: 394 ---NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY 450
+++ ++ ++D+ V + K+W W NE+ DG+R+D + +++D+
Sbjct: 185 EVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRDW 244
Query: 451 LEAT-----EPYFAVGEYWDSLSYTYGEMDH--NQDAHRQRIIDW-----INAASGTAGA 498
++A + F V EYW + + G++++ N+ + Q + D + AAS G
Sbjct: 245 VQAVRQATGKEMFTVAEYWQNNA---GKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGG 301
Query: 499 FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG------STQGH 552
+D+ RL D VV P +AVTF+ENHDT ST
Sbjct: 302 YDMR---------------RLLDGT-----VVSRHPEKAVTFVENHDTQPGQSLESTVQT 341
Query: 553 WRFPGGREMQGYAYILTH-PGTPSVFYDHIFS----------HYRQEIEALLSVRK 597
W P YA+ILT G P VFY ++ + IE +L RK
Sbjct: 342 WFKP-----LAYAFILTRESGYPQVFYGDMYGTKGTSPKEIPSLKDNIEPILKARK 392
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 173/417 (41%), Gaps = 115/417 (27%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTE--SVSPEGYMPRDLYNLS- 325
L Q F W + G+ + L+ A LS +G + +W+PP + S S GY P DLY+L
Sbjct: 5 LMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGE 64
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA------------------ 359
++YG EL+D + H +++ GDVVLNH+
Sbjct: 65 FQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRN 124
Query: 360 -----HYQNQNGVWNIFGGRLN----------------WDDRAVVADDPHFQGRG----- 393
YQ + F GR N WD+ ++ F+G G
Sbjct: 125 QETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKISRIFKFRGEGKAWDW 184
Query: 394 ---NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY 450
+++ ++ ++D+ V + K+W W NE+ DG+R+D + +++D+
Sbjct: 185 EVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRDW 244
Query: 451 LEAT-----EPYFAVGEYWDSLSYTYGEMDH--NQDAHRQRIIDW-----INAASGTAGA 498
++A + F V EYW + + G++++ N+ + Q + D + AAS G
Sbjct: 245 VQAVRQATGKEMFTVAEYWQNNA---GKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGG 301
Query: 499 FDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG------STQGH 552
+D+ + +L+ VV P ++VTF++NHDT ST
Sbjct: 302 YDM--RKLLNGT------------------VVSKHPLKSVTFVDNHDTQPGQSLESTVQT 341
Query: 553 WRFPGGREMQGYAYILTH-PGTPSVFYDHIFS----------HYRQEIEALLSVRKR 598
W P YA+ILT G P VFY ++ + +IE +L RK+
Sbjct: 342 WFKP-----LAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 176/405 (43%), Gaps = 103/405 (25%)
Query: 269 LCQGFNWESHKSGRWYME----------LKEKATELSSLGFSVIWLPPPTESVS---PEG 315
+ Q F WE + +G + E L E+A EL+ GF+ +WLPP + ++ G
Sbjct: 125 ILQAFYWEMN-TGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVG 183
Query: 316 YMPRDLYNLS---------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA------- 359
Y DL++L ++YG EL++ ++ H+ +K+ D VLNHR
Sbjct: 184 YGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETV 243
Query: 360 --------------------HYQNQNG-----VWN--IFGGRLNWDDRAVVADDPHFQGR 392
++ +NG WN F G +WDD + + F +
Sbjct: 244 LLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGT-DWDDYSKESGKYLFDEK 302
Query: 393 G---NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKD 449
+ +++ ++D+ + V+ D+ +W W+ N I +DG+RLD V+ ++
Sbjct: 303 SWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDGFRLDAVKHIDYRFIDK 362
Query: 450 YLEATE-----PYFAVGEYW-DSLSYTYGEMDH--NQDAH------RQRIIDWINAASGT 495
++ A + F VGE W + + G +D N D R +D +N A
Sbjct: 363 WMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGNPDLRVFDFPLRSFFVDMLNGAYMA 422
Query: 496 AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRF 555
D+ G+++S PG + +RAVTF++NHDT +G +
Sbjct: 423 ----DLRNAGLVNS-----------------PG----YENRAVTFVDNHDTDRDEGSYTV 457
Query: 556 P-GGREMQGYAYILTHP-GTPSVFY-DHIFSHYRQEIEALLSVRK 597
R+ Q YAYILT G P+V++ D+ ++ ++ LL+ R+
Sbjct: 458 SIYSRKYQAYAYILTRAEGVPTVYWKDYYIWEMKEGLDKLLTARR 502
>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
Length = 483
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 160/409 (39%), Gaps = 101/409 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
L Q F W G+ + L+ + L+ G + +W+PP + S GY DLY+L
Sbjct: 7 LMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNH--------------------- 356
++YG EL+ + H + + GDVV+NH
Sbjct: 67 FHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
Query: 357 -------------------RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG---- 393
R + Y + W F G +WD+ + FQG+
Sbjct: 127 RVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDG-TDWDESRKLNRIYKFQGKAWDWE 185
Query: 394 --NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL 451
N+ ++ +ID+ V +IK W W NE+ DG+RLD V+ +++D++
Sbjct: 186 VSNEFGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWV 245
Query: 452 -----EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI 506
+ + F V EYW SY G ++ +++N + FDV
Sbjct: 246 NHVREKTGKEMFTVAEYW---SYDLGALE-----------NYLNKTNFNHSVFDVPLHYQ 291
Query: 507 LHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG------STQGHWRFPGGRE 560
H+A + + + K VV P ++VTF++NHDT ST W P
Sbjct: 292 FHAASTQGGGYDM--RKLLNGTVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP---- 345
Query: 561 MQGYAYILTH-PGTPSVFYDHIFS----------HYRQEIEALLSVRKR 598
YA+ILT G P VFY ++ + +IE +L RK+
Sbjct: 346 -LAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
Through Introduction Of Hydrophobic Residues At The
Surface
Length = 483
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 160/409 (39%), Gaps = 101/409 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
L Q F W G+ + L+ + L+ G + +W+PP + S GY DLY+L
Sbjct: 7 LMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNH--------------------- 356
++YG EL+ + H + + GDVV+NH
Sbjct: 67 FHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
Query: 357 -------------------RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG---- 393
R + Y + W F G +WD+ + FQG+
Sbjct: 127 RVISGEVLIKAWTHFHFPGRGSTYSDFKWHWYHFDG-TDWDESRKLNRIYKFQGKAWDWE 185
Query: 394 --NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL 451
N+ ++ +ID+ V +IK W W NE+ DG+RLD V+ +++D++
Sbjct: 186 VSNEFGNYDYLMYADIDYDHPDVVAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWV 245
Query: 452 -----EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI 506
+ + F V EYW SY G ++ +++N + FDV
Sbjct: 246 NHVREKTGKEMFTVAEYW---SYDLGALE-----------NYLNKTNFNHSVFDVPLHYQ 291
Query: 507 LHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG------STQGHWRFPGGRE 560
H+A + + + K VV P ++VTF++NHDT ST W P
Sbjct: 292 FHAASTQGGGYDM--RKLLNGTVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKP---- 345
Query: 561 MQGYAYILTH-PGTPSVFYDHIFS----------HYRQEIEALLSVRKR 598
YA+ILT G P VFY ++ + +IE +L RK+
Sbjct: 346 -LAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
>pdb|1VJS|A Chain A, Structure Of Alpha-Amylase Precursor
Length = 483
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 160/409 (39%), Gaps = 101/409 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
L Q F W G+ + L+ + L+ G + +W+PP + S GY DLY+L
Sbjct: 7 LMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNH--------------------- 356
++YG EL+ + H + + GDVV+NH
Sbjct: 67 FHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRN 126
Query: 357 -------------------RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG---- 393
R + Y + W F G +WD+ + FQG+
Sbjct: 127 RVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDG-TDWDESRKLNRIYKFQGKAWDWE 185
Query: 394 --NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL 451
N++ ++ +ID+ V +IK W W NE+ DG+RLD V+ +++D++
Sbjct: 186 VSNENGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWV 245
Query: 452 -----EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI 506
+ + F V EYW + G ++ +++N + FDV
Sbjct: 246 NHVREKTGKEMFTVAEYWQN---DLGALE-----------NYLNKTNFNHSVFDVPLHYQ 291
Query: 507 LHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG------STQGHWRFPGGRE 560
H+A + + + K VV P +AVTF++NHDT ST W P
Sbjct: 292 FHAASTQGGGYDM--RKLLNSTVVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP---- 345
Query: 561 MQGYAYILTH-PGTPSVFYDHIFS----------HYRQEIEALLSVRKR 598
YA+ILT G P VFY ++ + +IE +L RK+
Sbjct: 346 -LAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 164/412 (39%), Gaps = 107/412 (25%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GY 316
+P GT + Q F W G + ++ +A LSSLG + +WLPP + S GY
Sbjct: 2 APFNGT----MMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGY 57
Query: 317 MPRDLYNLS---------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA-------- 359
DLY+L ++YG + + H GM++ DVV +H+
Sbjct: 58 GVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVD 117
Query: 360 --------HYQNQNGVWNI-------FGGRLN----------------WDDRAVVADDPH 388
Q +G + I F GR N WD+ ++
Sbjct: 118 AVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYK 177
Query: 389 FQGRGNK------SSGDNF----HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
F+G G + N+ +A ++DH + V ++K W W N DG+RLD
Sbjct: 178 FRGIGKAWDWEVDTENGNYDYLMYADLDMDHPE--VVTELKSWGKWYVNTTNIDGFRLDA 235
Query: 439 VRGFWGGYVKDYL-----EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-- 491
V+ + D+L + +P F VGEYW SY ++ HN + +A
Sbjct: 236 VKHIKFSFFPDWLSYVRSQTGKPLFTVGEYW---SYDINKL-HNYIMKTNGTMSLFDAPL 291
Query: 492 ------ASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHD 545
AS + G FD+ T ++ + L + + P+ AVTF++NHD
Sbjct: 292 HNKFYTASKSGGTFDMRT--LMTNTLMKDQ------------------PTLAVTFVDNHD 331
Query: 546 T--GSTQGHWRFPGGREMQGYAYILT-HPGTPSVFYDHIFSHYRQEIEALLS 594
T G W P + + YA+ILT G P VFY + + I +L S
Sbjct: 332 TEPGQALQSWVDPWFKPL-AYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKS 382
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 164/407 (40%), Gaps = 100/407 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q + W G+ + L + A LS G + IW+PP + S GY DLY+L
Sbjct: 7 MMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA----------------HY 361
++YG +L+ + + + GDVV+NH+ +
Sbjct: 67 FNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRW 126
Query: 362 QNQNGVWNI-------FGGRLN----------------WDDR-----AVVADDPHFQGRG 393
Q+ +G + I F GR N WD R + ++ R
Sbjct: 127 QDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRV 186
Query: 394 NKSSGD-NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG--FWGGYVKDY 450
++ +G+ ++ NID S V+ ++K+W W +E+ DG+RLD ++ FW Y D+
Sbjct: 187 DEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFW--YTSDW 244
Query: 451 L-----EATEPYFAVGEYWD----SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDV 501
+ EA + F VGEYW +L + EM+ + AS G++D+
Sbjct: 245 VRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDM 304
Query: 502 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT--GSTQGHWRFPGGR 559
+ IL +L P AVTF++NHDT G + W +
Sbjct: 305 --RNILRGSLVEAH------------------PMHAVTFVDNHDTQPGESLESWVADWFK 344
Query: 560 EMQGYAYILTHPGT-PSVFYDHIF-------SHYRQEIEALLSVRKR 598
+ YA ILT G P+VFY + S + I+ LL R+
Sbjct: 345 PL-AYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 102/407 (25%), Positives = 164/407 (40%), Gaps = 100/407 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q + W G+ + L + A LS G + IW+PP + S GY DLY+L
Sbjct: 7 MMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA----------------HY 361
++YG +L+ + + + GDVV+NH+ +
Sbjct: 67 FNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRW 126
Query: 362 QNQNGVWNI-------FGGRLN----------------WDDR-----AVVADDPHFQGRG 393
Q+ +G + I F GR N WD R + ++ R
Sbjct: 127 QDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHFNGVDWDQRYQENHIFRFANTNWNWRV 186
Query: 394 NKSSGD-NFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG--FWGGYVKDY 450
++ +G+ ++ NID S V+ ++K+W W +E+ DG+RLD ++ FW Y D+
Sbjct: 187 DEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFW--YTSDW 244
Query: 451 L-----EATEPYFAVGEYWD----SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDV 501
+ EA + F VGEYW +L + EM+ + AS G++D+
Sbjct: 245 VRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLHYNFYRASQQGGSYDM 304
Query: 502 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT--GSTQGHWRFPGGR 559
+ IL +L P AVTF++NHDT G + W +
Sbjct: 305 --RNILRGSLVEAH------------------PMHAVTFVDNHDTQPGESLESWVADWFK 344
Query: 560 EMQGYAYILTHPGT-PSVFYDHIF-------SHYRQEIEALLSVRKR 598
+ YA ILT G P+VFY + S + I+ LL R+
Sbjct: 345 PL-AYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 158/407 (38%), Gaps = 99/407 (24%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q F W G + L++ A L S G + +W+PP + S GY DLY+L
Sbjct: 9 MMQYFEWHLPNDGNHWNRLRDDAANLKSKGITAVWIPPAWKGTSQNDVGYGAYDLYDLGE 68
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNH----------------RCAHY 361
++YG +L+ V + G+++ GDVV+NH R
Sbjct: 69 FNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHKGGADGTEMVNAVEVNRSNRN 128
Query: 362 QNQNGVWNI-------FGGRLN----------------WDDRAVVADDPH-FQGRGN--- 394
Q +G + I F GR N WD + + + F+G G
Sbjct: 129 QEISGEYTIEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFRGTGKAWD 188
Query: 395 -----KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKD 449
++ ++ +ID V +++ W W N + DG+R+D V+ Y +D
Sbjct: 189 WEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKYSYTRD 248
Query: 450 YL-----EATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK 504
+L +P FAV E+W + I +++N S FDV
Sbjct: 249 WLTHVRNTTGKPMFAVAEFWKN--------------DLAAIENYLNKTSWNHSVFDVPLH 294
Query: 505 GILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG------HWRFPGG 558
L++A + Y+ + + VV P AVTF++NHD+ + W P
Sbjct: 295 YNLYNASNSGGYFDMRNILNGS--VVQKHPIHAVTFVDNHDSQPGEALESFVQSWFKP-- 350
Query: 559 REMQGYAYILTH-PGTPSVFYD-------HIFSHYRQEIEALLSVRK 597
YA ILT G PSVFY H + +I+ LL R+
Sbjct: 351 ---LAYALILTREQGYPSVFYGDYYGIPTHGVPSMKSKIDPLLQARQ 394
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/469 (22%), Positives = 178/469 (37%), Gaps = 108/469 (23%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q F W G + L A+ L S G + +W+PP + S GY DLY+L
Sbjct: 9 MMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGE 68
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA--------------HYQN 363
++YG +L+ V + G+++ GDVV+NH+ + +N
Sbjct: 69 FNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRN 128
Query: 364 Q--NGVWNI-------FGGRLN----------------WDDRAVVADDPH-FQGRG---- 393
Q G + I F GR N WD + + + F+G G
Sbjct: 129 QEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWD 188
Query: 394 ----NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKD 449
++ ++ +ID V +++ W W N +G DG+R+D V+ + +D
Sbjct: 189 WEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYSFTRD 248
Query: 450 YLE-----ATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK 504
++ + FAV E+W + I +++ + FDV
Sbjct: 249 WINHVRSATGKNMFAVAEFWKN--------------DLGAIENYLQKTNWNHSVFDVPLH 294
Query: 505 GILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG------HWRFPGG 558
L++A + + + VV PS AVTF++NHD+ + W P
Sbjct: 295 YNLYNASKSGGNYDMRNIFNGT--VVQRHPSHAVTFVDNHDSQPEEALESFVEEWFKP-- 350
Query: 559 REMQGYAYILTH-PGTPSVFYD-------HIFSHYRQEIEALLSVRKRNKIHCRSRV--- 607
YA LT G PSVFY H R +I+ +L R++ ++
Sbjct: 351 ---LAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAYGKQNDYLDH 407
Query: 608 -EIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVW 655
I+ R+ A + +A + G +G W FV + +VW
Sbjct: 408 HNIIGWTREGNTAHPNSGLATIMSDG-----AGGSKWMFVGRNKAGQVW 451
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 183/472 (38%), Gaps = 112/472 (23%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q F W G+ + L++ A+ L + G + IW+PP + S GY DLY+L
Sbjct: 5 MMQYFEWHLPNDGQHWNRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLGE 64
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN------------ 365
++YG +L+ ++ + G+++ GDVV+NH+ +N
Sbjct: 65 FNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRN 124
Query: 366 ----GVWNI-------FGGRLN------WD----DRAVVADDPHFQGRGNKSSGDN---- 400
G + I F GR N W D FQ R K GD
Sbjct: 125 QEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWD 184
Query: 401 -------------FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 447
+A ++DH + V +++ W W N + DG+R+D V+ +
Sbjct: 185 WEVDSENGNYDYLMYADVDMDHPE--VVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFT 242
Query: 448 KDYL----EAT-EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVT 502
+D+L AT + FAV E+W + G ++ +++N + FDV
Sbjct: 243 RDWLTHVRNATGKEMFAVAEFWKN---DLGALE-----------NYLNKTNWNHSVFDVP 288
Query: 503 TKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG------HWRFP 556
L++A + + ++ K VV P AVTF++NHD+ + W P
Sbjct: 289 LHYNLYNASNSGGNYDMA--KLLNGTVVQKHPMHAVTFVDNHDSQPGESLESFVQEWFKP 346
Query: 557 GGREMQGYAYILTH-PGTPSVFY-------DHIFSHYRQEIEALLSVRKRNKIHCR---- 604
YA ILT G PSVFY H + +I+ +L R+ +
Sbjct: 347 -----LAYALILTREQGYPSVFYGDYYGIPTHSVPAMKAKIDPILEARQNFAYGTQHDYF 401
Query: 605 SRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWE 656
I+ R+ + +A + G G + W +V + + +VW
Sbjct: 402 DHHNIIGWTREGNTTHPNSGLATIMSDG-----PGGEKWMYVGQNKAGQVWH 448
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 109/472 (23%), Positives = 183/472 (38%), Gaps = 112/472 (23%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
+ Q F W G+ + L++ A+ L + G + IW+PP + S GY DLY+L
Sbjct: 9 MMQYFEWHLPNDGQHWNRLRDDASNLRNRGITAIWIPPAWKGTSQNDVGYGAYDLYDLGE 68
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN------------ 365
++YG +L+ ++ + G+++ GDVV+NH+ +N
Sbjct: 69 FNQKGTVRTKYGTRSQLESAIHALKNNGVQVYGDVVMNHKGGADATENVLAVEVNPNNRN 128
Query: 366 ----GVWNI-------FGGRLN------WD----DRAVVADDPHFQGRGNKSSGDN---- 400
G + I F GR N W D FQ R K GD
Sbjct: 129 QEISGDYTIEAWTKFDFPGRGNTYSDFKWRWYHFDGVDWDQSRQFQNRIYKFRGDGKAWD 188
Query: 401 -------------FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 447
+A ++DH + V +++ W W N + DG+R+D V+ +
Sbjct: 189 WEVDSENGNYDYLMYADVDMDHPE--VVNELRRWGEWYTNTLNLDGFRIDAVKHIKYSFT 246
Query: 448 KDYL----EAT-EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVT 502
+D+L AT + FAV E+W + G ++ +++N + FDV
Sbjct: 247 RDWLTHVRNATGKEMFAVAEFWKN---DLGALE-----------NYLNKTNWNHSVFDVP 292
Query: 503 TKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG------HWRFP 556
L++A + + ++ K VV P AVTF++NHD+ + W P
Sbjct: 293 LHYNLYNASNSGGNYDMA--KLLNGTVVQKHPMHAVTFVDNHDSQPGESLESFVQEWFKP 350
Query: 557 GGREMQGYAYILTH-PGTPSVFYD-------HIFSHYRQEIEALLSVRKRNKIHCR---- 604
YA ILT G PSVFY H + +I+ +L R+ +
Sbjct: 351 -----LAYALILTREQGYPSVFYGDYYGIPTHSVPAMKAKIDPILEARQNFAYGTQHDYF 405
Query: 605 SRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKVWE 656
I+ R+ + +A + G G + W +V + + +VW
Sbjct: 406 DHHNIIGWTREGNTTHPNSGLATIMSDG-----PGGEKWMYVGQNKAGQVWH 452
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 276 ESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--------SPEGYMPRDLYNLSSR 327
+ + G W + +K + +GF+ IW+ P T + + GY +D+Y+L+
Sbjct: 35 QKYCGGTW-QGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNEN 93
Query: 328 YGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP 387
YG D+LK + + H+ GM ++ DVV NH + +++F + D
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 388 HFQGRGNKSS---GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV----R 440
+++ + GDN + P++D ++D V+ + +W+ L + DG R+D V +
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK 213
Query: 441 GFWGGYVK 448
FW GY K
Sbjct: 214 DFWPGYNK 221
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 276 ESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--------GYMPRDLYNLSSR 327
+ + G W + +K + +GF+ IW+ P T + + GY D+Y+L+
Sbjct: 35 QKYCGGTW-QGIIDKLDYIQGMGFTAIWITPVTAQLPQDCAYGDAYTGYWQTDIYSLNEN 93
Query: 328 YGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP 387
YG D+LK + + H+ GM ++ DVV NH + +++F + D
Sbjct: 94 YGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQ 153
Query: 388 HFQGRGNKSS---GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV----R 440
+++ + GDN + P++D ++D V+ + +W+ L + DG R+D V +
Sbjct: 154 NYEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQK 213
Query: 441 GFWGGYVK 448
FW GY K
Sbjct: 214 DFWPGYNK 221
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 264 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--------G 315
TG EI C G +W+ Y+E +GF+ IW+ P TE + + G
Sbjct: 32 TGNEIYCGG-SWQGIIDHLDYIE---------GMGFTAIWISPITEQLPQDTADGEAYHG 81
Query: 316 YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN----GVWNIF 371
Y + +Y+++S +G D LK + + H GM ++ DVV +H + N N V++ F
Sbjct: 82 YWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHM-GYAGNGNDVDYSVFDPF 140
Query: 372 GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 431
+ ++ D + + GD + P++D ++ VR +W+ L +
Sbjct: 141 DSSSYFHPYCLITDWDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSV 200
Query: 432 DGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQ---DAHRQRIIDW 488
DG R+D V LE +P F G S Y GE+D+ D Q+++D
Sbjct: 201 DGLRIDSV-----------LEV-QPDFFPGYNKASGVYCVGEIDNGNPASDCPYQKVLDG 248
Query: 489 I 489
+
Sbjct: 249 V 249
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 34/221 (15%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP--- 313
+ SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 1 QYSPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G
Sbjct: 55 FRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTS 112
Query: 369 NIFGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------Q 411
+ G N R AV F G+ SGD N++ A + +
Sbjct: 113 STCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEK 172
Query: 412 DFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
D+VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 173 DYVRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 34/221 (15%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP--- 313
+ SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 1 QYSPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G
Sbjct: 55 FRPWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTS 112
Query: 369 NIFGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------Q 411
+ G N R AV F G+ SGD N++ A + +
Sbjct: 113 STCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEK 172
Query: 412 DFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
D+VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 173 DYVRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1BPL|B Chain B, Glycosyltransferase
Length = 294
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 43/215 (20%)
Query: 406 NIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL-----EATEPYFAV 460
+ID+ V +IK W W NE+ DG+RLD V+ +++D++ + + F V
Sbjct: 11 DIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTV 70
Query: 461 GEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLS 520
EYW + G ++ +++N + FDV H+A + + +
Sbjct: 71 AEYWQN---DLGALE-----------NYLNKTNFNHSVFDVPLHYQFHAASTQGGGYDM- 115
Query: 521 DEKGKPPGVVGWWPSRAVTFIENHDTG------STQGHWRFPGGREMQGYAYILTH-PGT 573
K VV P +AVTF++NHDT ST W P YA+ILT G
Sbjct: 116 -RKLLNSTVVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKP-----LAYAFILTRESGY 169
Query: 574 PSVFYDHIFS----------HYRQEIEALLSVRKR 598
P VFY ++ + +IE +L RK+
Sbjct: 170 PQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 204
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RLD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLDASKHMWPGDIKAILD 212
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G++LD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFQLDASKHMWPGDIKAILD 212
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+ LD + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFALDASKHMWPGDIKAILD 212
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP----- 313
SP T G + F W RW E L+ GF + + PP E+V+
Sbjct: 3 SPNTQQGRTSIVHLFEW------RWVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNI 370
E Y P Y L +R GN DE +++V + ++VG++I D V+NH C + + G +
Sbjct: 57 PWWERYQPVS-YKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSST 114
Query: 371 FGGRLNWDDR---AVVADDPHFQ-GRGNKSSGD--NFHAAPNIDHS-----------QDF 413
G N R AV F G+ SGD N++ A + +D+
Sbjct: 115 CGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDY 174
Query: 414 VRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
VR I E++ L +IG G+RL + W G +K L+
Sbjct: 175 VRSKIAEYMNHLI-DIGVAGFRLAASKHMWPGDIKAILD 212
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPAWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPLWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 141/345 (40%), Gaps = 61/345 (17%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGADFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLEA----TEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAA 492
D + G +K L+ +F G S + Y E+ D + I
Sbjct: 197 DASKHMAPGDIKAILDKLHNLNSNWFPEG----SKPFIYQEV---IDLGGEPIKSSDYFG 249
Query: 493 SGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS-RAVTFIENHDTGSTQG 551
+G F K L + + + ++S K G G+ PS RA+ F++NHD G
Sbjct: 250 NGRVTEFKYGAK--LGTVIRKWNGEKMSALKNWGEG-AGFMPSDRALVFVDNHDNQRGHG 306
Query: 552 HWRFPGGREMQGYA----------YILTHPGTPSVFYDHIFSHYR 586
GG + +A ++L HP + + S YR
Sbjct: 307 ----AGGASILTFADARLYKMAVGFMLAHP----YGFTRVMSSYR 343
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + SS + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSSYEDGIYRNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N++ A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDN-----FHAAPNIDHSQD 412
NG + GG N D + + H G + S+ +N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKGLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 150/357 (42%), Gaps = 77/357 (21%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG ++ C N + + G W + K S LG + +W+ P E++
Sbjct: 35 TGAAYDATCS--NLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC-AHYQNQNGV 367
+ GY RD + +G + + ++++ H G+KI+ D NH A +N
Sbjct: 93 TNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAEN---- 148
Query: 368 WNIFGGRLNWDDRAVVA---DDP----HFQGRGNKSSGD-----NFHAAPNIDHSQDFVR 415
GRL +D+ +V +D H G + SS + N + + +H+ +
Sbjct: 149 -----GRL-YDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATID 202
Query: 416 KDIKEWL-CWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPYFAVGEYWDSLSYTY 471
K K+ + WL ++G DG R+D V+ G+ K ++ A +P F GE++ L
Sbjct: 203 KYFKDAIKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWF--LGSAA 258
Query: 472 GEMDHNQDAHRQ--RIIDW-INAASGTAGAFDVTTKGILHSALDR--CEYWRLSDEKGKP 526
+ D+ A++ ++D+ N+A + + L S ++ +Y +++D+
Sbjct: 259 SDADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ---- 314
Query: 527 PGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-----REMQGYAYILTHPGTPSVFY 578
VTFI+NHD RF R Q A+ LT G P+++Y
Sbjct: 315 -----------VTFIDNHDMD------RFKTSAVNNRRLEQALAFTLTSRGVPAIYY 354
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 69/356 (19%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG ++ C N + + G W + K S LG + +W+ P E++
Sbjct: 35 TGAAYDATCS--NLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
+ GY RD + +G + + ++++ H G+KI+ D NH +
Sbjct: 93 TNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFA 152
Query: 369 NIFGGRLNWDDRAVVA---DDP----HFQGRGNKSSGD-----NFHAAPNIDHSQDFVRK 416
GRL +D+ +V +D H G + SS + N + + +H+ + K
Sbjct: 153 E--NGRL-YDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDK 209
Query: 417 DIKEWL-CWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPYFAVGEYWDSLSYTYG 472
K+ + WL ++G DG R+D V+ G+ K ++ A +P F GE++ L
Sbjct: 210 YFKDAIKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWF--LGSAAS 265
Query: 473 EMDHNQDAHRQ--RIIDW-INAASGTAGAFDVTTKGILHSALDR--CEYWRLSDEKGKPP 527
+ D+ A++ ++D+ N+A + + L S ++ +Y +++D+
Sbjct: 266 DADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ----- 320
Query: 528 GVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-----REMQGYAYILTHPGTPSVFY 578
VTFI+NHD RF R Q A+ LT G P+++Y
Sbjct: 321 ----------VTFIDNHDMD------RFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINDSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 131/337 (38%), Gaps = 74/337 (21%)
Query: 287 LKEKATELSSLGFSVIWLPP---------PTESVSPEGYMPRDLYNLSSRYGNIDELKDV 337
+++K L LG + IWL P T++ GY RD + +GN +
Sbjct: 54 VRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTL 113
Query: 338 VNKFHDVGMKILGDVVLNHRC-------------AHYQNQNGVWNIFGGRLNWDDRAVVA 384
VN H G+K++ D V NH A Y N + N F DD A
Sbjct: 114 VNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF------DD----A 163
Query: 385 DDPHFQGRGNKSSGDNFHAA--PNIDHSQDFVRKD-------IKEWLCWLRNEI---GYD 432
+F G+ S+ D+ + A N F D I ++L ++ G D
Sbjct: 164 TKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGAD 223
Query: 433 GWRLDFVRGFWGGYVK---DYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWI 489
G R+D V+ F G+ K D L + F VGE+ YG+ D H ++ + +
Sbjct: 224 GLRIDAVKHFNSGFSKSLADKLYQKKDIFLVGEW-------YGD-DPGTANHLEK-VRYA 274
Query: 490 NAASGTAGAFDVTT--KGILHSALDRC-EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT 546
N + FD+ T + + + + + ++ G + +TFI+NHD
Sbjct: 275 NNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYK----YKENLITFIDNHDM 330
Query: 547 GSTQGHWRFPG-----GREMQGYAYILTHPGTPSVFY 578
RF Q A+ILT GTPS++Y
Sbjct: 331 S------RFLSVNSNKANLHQALAFILTSRGTPSIYY 361
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
LK + L LG +WL P S+S GY D Y+ + YG+ E K+++ FHD G+
Sbjct: 25 LKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGI 84
Query: 347 KILGDVVLNH 356
K++ D+ ++H
Sbjct: 85 KVVLDLPIHH 94
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 28/196 (14%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 333
RW E L+ GF + + PP E+V+ E Y P Y L +R GN DE
Sbjct: 20 RWVDIALECERYLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 78
Query: 334 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDR---AVVADDPHFQ 390
+++V + ++VG++I D V+NH C + + G + G N R AV F
Sbjct: 79 FRNMVTRCNNVGVRIYVDAVINHMCGNAVSA-GTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 391 -GRGNKSSGD--NFHAAPNIDH-----------SQDFVRKDIKEWLCWLRNEIGYDGWRL 436
G+ SGD N + A + +D+VR I E++ L +IG G+R+
Sbjct: 138 DGKCKTGSGDIENMNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLI-DIGVAGFRI 196
Query: 437 DFVRGFWGGYVKDYLE 452
D + W G +K L+
Sbjct: 197 DASKHMWPGDIKAILD 212
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLFDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ GY RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDFSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE++ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKNMPFGWQKSFMATINNYKPVFTFGEWFLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D+ A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 148/356 (41%), Gaps = 69/356 (19%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG ++ C N + + G W + K S LG + +W+ P E++
Sbjct: 35 TGAAYDATCS--NLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
+ GY RD + +G + + ++++ H G+KI+ D NH +
Sbjct: 93 TNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFA 152
Query: 369 NIFGGRLNWDDRAVVA---DDP----HFQGRGNKSSGD-----NFHAAPNIDHSQDFVRK 416
GRL +D+ +V +D H G + SS + N + + +H+ + K
Sbjct: 153 E--NGRL-YDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDK 209
Query: 417 DIKEWL-CWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPYFAVGEYWDSLSYTYG 472
K+ + WL ++G DG R+D V+ G+ K ++ A +P F GE++ L
Sbjct: 210 YFKDAIKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGEWF--LGSAAS 265
Query: 473 EMDHNQDAHRQ--RIIDW-INAASGTAGAFDVTTKGILHSALDR--CEYWRLSDEKGKPP 527
+ D+ A++ ++D+ N+A + + L S ++ +Y +++D+
Sbjct: 266 DADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ----- 320
Query: 528 GVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-----REMQGYAYILTHPGTPSVFY 578
VTFI+NHD RF R Q A+ LT G P+++Y
Sbjct: 321 ----------VTFIDNHDMD------RFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F G+++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLLDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLGDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ GY RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDFSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE++ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D+ A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLDY-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ GY RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDFSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE++ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D + A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLD-LRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|1BPL|A Chain A, Glycosyltransferase
Length = 189
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLS- 325
L Q F W G+ + L+ + L+ G + +W+PP + S GY DLY+L
Sbjct: 7 LMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGE 66
Query: 326 --------SRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 357
++YG EL+ + H + + GDVV+NH+
Sbjct: 67 FHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHK 106
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ + NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 147/358 (41%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ GY RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDFSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE++ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D+ A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLWDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
LS LG + ++ P ++ + Y D + + ++G+ D LK +V+ H+ G+++L D V
Sbjct: 181 LSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAV 240
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAP-----NID 408
NH + V G + + D + P + + D F P N +
Sbjct: 241 FNHSGRTFPPFVDVLKN-GEKSKYKDWFHIRSLP-LEVVDGIPTYDTFAFEPLMPKLNTE 298
Query: 409 HSQDFVRKDIKEWLC-----WLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPYFA 459
H D+KE+L W+R E G DGWRLD FW + + +A +
Sbjct: 299 HP------DVKEYLLKAAEYWIR-ETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYI 351
Query: 460 VGEYW 464
+GE W
Sbjct: 352 LGEVW 356
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 69/356 (19%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG ++ C N + + G W + K S LG + +W+ P E++
Sbjct: 35 TGAAYDATCS--NLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
+ GY RD + +G + + ++++ H G+KI+ D NH +
Sbjct: 93 TNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFA 152
Query: 369 NIFGGRLNWDDRAVVA---DDP----HFQGRGNKSSGD-----NFHAAPNIDHSQDFVRK 416
GRL +D+ +V +D H G + SS + N + + +H+ + K
Sbjct: 153 E--NGRL-YDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDK 209
Query: 417 DIKEWL-CWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPYFAVGEYWDSLSYTYG 472
K+ + WL ++G DG R+D V+ G+ K ++ A +P F G ++ L
Sbjct: 210 YFKDAIKLWL--DMGVDGIRVDAVKHMPLGWQKSWMSSIYAHKPVFTFGAWF--LGSAAS 265
Query: 473 EMDHNQDAHRQ--RIIDW-INAASGTAGAFDVTTKGILHSALDR--CEYWRLSDEKGKPP 527
+ D+ A++ ++D+ N+A + + L S ++ +Y +++D+
Sbjct: 266 DADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ----- 320
Query: 528 GVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-----REMQGYAYILTHPGTPSVFY 578
VTFI+NHD RF R Q A+ LT G P+++Y
Sbjct: 321 ----------VTFIDNHDMD------RFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 71/357 (19%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD----NFHAAPNIDHSQD- 412
NG + GG N D + + H G ++ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLFH---HNLGTDFSTTENGIYKNLYDLADLNHNNST 206
Query: 413 ---FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDS 466
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 207 VDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLG 261
Query: 467 LSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSDE 522
++ E + ++D+ A F T + L + L+ +Y ++ D+
Sbjct: 262 VNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQ 320
Query: 523 KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 321 ---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 146/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ GY RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDLSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE+ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWLLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D+ A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 145/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R++ V+ G+ K ++ A +P F G+++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 69/356 (19%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG ++ C N + + G W + K S LG + +W+ P E++
Sbjct: 35 TGAAYDATCS--NLKLYCGGDWQGLINKINDNYFSDLGVTALWISQPVENIFATINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 368
+ GY RD + +G + + ++++ H G+KI+ D NH +
Sbjct: 93 TNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFA 152
Query: 369 NIFGGRLNWDDRAVVA---DDP----HFQGRGNKSSGD-----NFHAAPNIDHSQDFVRK 416
GRL +D+ +V +D H G + SS + N + + +H+ + K
Sbjct: 153 E--NGRL-YDNGTLVGGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDK 209
Query: 417 DIKEWL-CWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPYFAVGEYWDSLSYTYG 472
K+ + WL ++G DG R+ V+ G+ K ++ A +P F GE++ L
Sbjct: 210 YFKDAIKLWL--DMGVDGIRVAAVKHMPLGWQKSWMSSIYAHKPVFTFGEWF--LGSAAS 265
Query: 473 EMDHNQDAHRQ--RIIDW-INAASGTAGAFDVTTKGILHSALDR--CEYWRLSDEKGKPP 527
+ D+ A++ ++D+ N+A + + L S ++ +Y +++D+
Sbjct: 266 DADNTDFANKSGMSLLDFRFNSAVRNVFRDNTSNMYALDSMINSTATDYNQVNDQ----- 320
Query: 528 GVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-----REMQGYAYILTHPGTPSVFY 578
VTFI+NHD RF R Q A+ LT G P+++Y
Sbjct: 321 ----------VTFIDNHDMD------RFKTSAVNNRRLEQALAFTLTSRGVPAIYY 360
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 144/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+D V+ G+ K ++ A +P F GE++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP 313
+ +P T +G + F W RW E L GF + + PP E+V +P
Sbjct: 1 QYAPQTQSGRTDIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENVVVTNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH-------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 55 SRPWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGT 113
Query: 361 ----YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
Y N W+ G+ + + + +Q R + G ++
Sbjct: 114 TCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDL 168
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+RLD + W G +K L+
Sbjct: 169 ALEKDYVRSMIADYLNKLI-DIGVAGFRLDASKHMWPGDIKAVLD 212
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 146/358 (40%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGSCT--NLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN----- 363
+ G RD + YG + + K++++ H +K++ D NH +
Sbjct: 93 NNTAYHGLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFA 152
Query: 364 QNGVW----NIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD-- 412
+NG N+ GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGNLLGGYTN-DTQNLF----HHYGGTDFSTIENGIYKNLYDLADLNHNNSSV 207
Query: 413 --FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWDSL 467
+++ IK WL ++G DG R+D V+ G+ K ++ +P F GE++ +
Sbjct: 208 DVYLKDAIKMWL-----DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFGEWFLGV 262
Query: 468 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALDRCE--YWRLSDEK 523
+ E + ++D+ A F T + L + L+ E Y +++D+
Sbjct: 263 NEISPEYHQFANESGMSLLDF-RFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQ- 320
Query: 524 GKPPGVVGWWPSRAVTFIENHDT---GSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 578
VTFI+NHD ++ G R + Q A+ LT G P+++Y
Sbjct: 321 --------------VTFIDNHDMERFHTSNGDRR----KLEQALAFTLTSRGVPAIYY 360
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 7/186 (3%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + I+L P S S Y D + + +G+ + LK ++++ H+ G++++ D V
Sbjct: 185 LVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAV 244
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNIDHSQD 412
NH + VW G + D + + P + R N + P ++ +
Sbjct: 245 FNHCGYEFAPFQDVWKN-GESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANP 303
Query: 413 FVRKDIKEWLCWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPYFAVGEYW-DSL 467
V++ + + + E DGWRLD FW + ++ + +GE W D++
Sbjct: 304 EVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM 363
Query: 468 SYTYGE 473
+ G+
Sbjct: 364 PWLRGD 369
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/358 (21%), Positives = 143/358 (39%), Gaps = 73/358 (20%)
Query: 262 TGTGFEILCQGFNWESHKSGRWYMEL-KEKATELSSLGFSVIWLPPPTESV--------- 311
TG F+ C N + G W + K L+ +G + IW+ P E++
Sbjct: 35 TGAAFDGTCT--NLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGV 92
Query: 312 ---SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ---- 364
+ GY RD + YG I + ++++ H +K++ D NH +Q
Sbjct: 93 NNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFA 152
Query: 365 -------NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGD-----NFHAAPNIDHSQD 412
NG + GG N D + + H G + S+ + N + +++H+
Sbjct: 153 ENGRLYDNGT--LLGGYTN-DTQNLF----HHNGGTDFSTTENGIYKNLYDLADLNHNNS 205
Query: 413 ----FVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT---EPYFAVGEYWD 465
+++ IK WL ++G DG R+ V+ G+ K ++ A +P F G ++
Sbjct: 206 TVDVYLKDAIKMWL-----DLGIDGIRMAAVKHMPFGWQKSFMAAVNNYKPVFTFGAWFL 260
Query: 466 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI--LHSALD--RCEYWRLSD 521
++ E + ++D+ A F T + L + L+ +Y ++ D
Sbjct: 261 GVNEVSPENHKFANESGMSLLDF-RFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDD 319
Query: 522 EKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREM-QGYAYILTHPGTPSVFY 578
+ VTFI+NHD + H R++ Q A+ LT G P+++Y
Sbjct: 320 Q---------------VTFIDNHDM--ERFHASNANRRKLEQALAFTLTSRGVPAIYY 360
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP 313
+ +P T +G + F W RW E L GF + + PP E+V +P
Sbjct: 1 QYAPQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENVVVTNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH-------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 55 SRPWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGT 113
Query: 361 ----YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
Y N W+ G+ + + + +Q R + G ++
Sbjct: 114 TCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDL 168
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 169 ALEKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E+V +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENVVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E+V +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENVVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E+V +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENVVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP 313
+ +P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 1 QYAPQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH-------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 55 SRPWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGT 113
Query: 361 ----YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
Y N W+ G+ + + + +Q R + G ++
Sbjct: 114 TCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDL 168
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 169 ALEKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP 313
+ +P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 1 QYAPQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH-------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 55 SRPWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGT 113
Query: 361 ----YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
Y N W+ G+ + + + +Q R + G ++
Sbjct: 114 TCGSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDL 168
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 169 ALEKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGSREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 257 KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP 313
+ +P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 1 QYAPQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNP 54
Query: 314 -----EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH-------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 55 SRPWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGT 113
Query: 361 ----YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
Y N W+ G+ + + + +Q R + G ++
Sbjct: 114 TCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDL 168
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 169 ALEKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 81/186 (43%), Gaps = 7/186 (3%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + I+L P S S Y D + + +G+ + LK ++++ H+ G++++ D V
Sbjct: 185 LVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAV 244
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNIDHSQD 412
NH + VW G + D + + P + R N + P ++ +
Sbjct: 245 FNHCGYEFAPFQDVWKN-GESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANP 303
Query: 413 FVRKDIKEWLCWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPYFAVGEYW-DSL 467
V++ + + + E DGWRLD FW + ++ + +G+ W D++
Sbjct: 304 EVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGQIWHDAM 363
Query: 468 SYTYGE 473
+ G+
Sbjct: 364 PWLRGD 369
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 42/223 (18%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T +G + F W RW E L GF + + PP E++ +P
Sbjct: 3 APQTQSGRTSIVHLFEW------RWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH---------- 360
E Y P Y L +R GN +E +D+V + ++VG++I D V+NH C
Sbjct: 57 PWWERYQPVS-YKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTC 115
Query: 361 --YQNQNG---------VWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 409
Y N W+ G+ + + + +Q R + G ++
Sbjct: 116 GSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLVG-----LLDLAL 170
Query: 410 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE 452
+D+VR I ++L L +IG G+R+D + W G +K L+
Sbjct: 171 EKDYVRSMIADYLNKLI-DIGVAGFRIDASKHMWPGDIKAVLD 212
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 126/322 (39%), Gaps = 64/322 (19%)
Query: 294 LSSLGFSVIWLPPPTE-------------SVSPEGYMPRDLYNLSSRYGNIDELKDVVNK 340
L+ +G + IW+P P E S S GY RD + +G+ + ++++N
Sbjct: 66 LTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125
Query: 341 FHDVGMKILGDVVLNHRCAHYQN-----QNGVW----NIFGGRLNWDDRAVVADDPHFQG 391
H +K++ D NH + +NG + GG N D H+ G
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTN-DTNGYFH---HYGG 181
Query: 392 RGNKSSGDNFH------AAPNIDHS--QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW 443
S D + A N +S +++ IK WL ++G DG RLD V+
Sbjct: 182 TDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-----DMGIDGIRLDAVKHMP 236
Query: 444 GGYVKDYLEAT---EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFD 500
G+ K+++++ P F GE++ + E+D N + N + + F
Sbjct: 237 FGWQKNFMDSILSYRPVFTFGEWFLGTN----EIDVNNTY-------FANESGMSLLDFR 285
Query: 501 VTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGRE 560
+ K + D + D + + + VTFI+NHD RF G
Sbjct: 286 FSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDMD------RFYNGGS 338
Query: 561 M----QGYAYILTHPGTPSVFY 578
Q A+ LT G P+++Y
Sbjct: 339 TRPVEQALAFTLTSRGVPAIYY 360
>pdb|3VM5|A Chain A, Recombinant Medaka Fish Alpha-Amylase Expressed In Yeast
Pichia Pastoris
Length = 505
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 259 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV---SP-- 313
+P T G + F W RW E L GF+ + + PP E + SP
Sbjct: 3 NPNTRDGRTAIVHLFEW------RWADIAAECERFLGPKGFAGVQISPPNEHILVSSPWR 56
Query: 314 ---EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 359
+ Y P YNL SR G +EL+D++ + ++VG+ + D V+NH C
Sbjct: 57 PWWQRYQPIS-YNLCSRSGGENELRDMITRCNNVGVNVYVDAVINHMCG 104
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 9/187 (4%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L+ LG + I+L P + S Y D + + +G+ + LK +V + H+ G++++ D V
Sbjct: 185 LADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAV 244
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNIDHSQD 412
NH + V G + D + + P + R N + P ++ +
Sbjct: 245 FNHCGYEFAPFQDVLKN-GAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHP 303
Query: 413 FVRKDIKEWLCWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEP-YFAVGEYW-DS 466
V++ + + + E DGWRLD FW + + ++A +P + +GE W D+
Sbjct: 304 EVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREF-RQAVKALKPDVYILGEIWHDA 362
Query: 467 LSYTYGE 473
+ + G+
Sbjct: 363 MPWLRGD 369
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDF 413
NH + V G + + D + D P +K+S N+ A +
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETAAVQVPAMPK 295
Query: 414 VRK---DIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPYFAVG 461
+R ++KE+L W+ E G DGWRLD FW + + VG
Sbjct: 296 LRTENPEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVG 353
Query: 462 EYWDSLS 468
E W S
Sbjct: 354 EIWHDAS 360
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+ E + +LG + I+ P +S S Y D Y + G + K++++ H +
Sbjct: 58 IMEDLDYIQNLGINAIYFTPIFQSASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNI 117
Query: 347 KILGDVVLNHRCA-----HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF 401
K++ D V NH H +NG + + + + + F +G+
Sbjct: 118 KVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPANYVGWAGN-- 175
Query: 402 HAAPNIDHSQDFVRKDIKEWL-CWLRNEIGYDGWRLDF-----VRGFWGGYVKDYLEATE 455
A P +H VR+ I E WL+ G DGWRLD GFW + +D +A
Sbjct: 176 RALPEFNHDNPEVREYIMEIAEYWLK--FGIDGWRLDVPFEIKTPGFWQEF-RDRTKAIN 232
Query: 456 P-YFAVGEYW 464
P + VGE W
Sbjct: 233 PEAYIVGEVW 242
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 125/322 (38%), Gaps = 64/322 (19%)
Query: 294 LSSLGFSVIWLPPPTE-------------SVSPEGYMPRDLYNLSSRYGNIDELKDVVNK 340
L+ +G + IW+ P E S S GY RD + +G+ + ++++N
Sbjct: 66 LTGMGVTAIWISQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINT 125
Query: 341 FHDVGMKILGDVVLNHRCAHYQN-----QNGVW----NIFGGRLNWDDRAVVADDPHFQG 391
H +K++ D NH + +NG + GG N D H+ G
Sbjct: 126 AHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTN-DTNGYFH---HYGG 181
Query: 392 RGNKSSGDNFH------AAPNIDHS--QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW 443
S D + A N +S +++ IK WL ++G DG RLD V+
Sbjct: 182 TDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWL-----DMGIDGIRLDAVKHMP 236
Query: 444 GGYVKDYLEAT---EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFD 500
G+ K+++++ P F GE++ + E+D N + N + + F
Sbjct: 237 FGWQKNFMDSILSYRPVFTFGEWFLGTN----EIDVNNTY-------FANESGMSLLDFR 285
Query: 501 VTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGRE 560
+ K + D + D + + + VTFI+NHD RF G
Sbjct: 286 FSQK-VRQVFRDNTDTMYGLDSMIQSTASDYNFINDMVTFIDNHDMD------RFYNGGS 338
Query: 561 M----QGYAYILTHPGTPSVFY 578
Q A+ LT G P+++Y
Sbjct: 339 TRPVEQALAFTLTSRGVPAIYY 360
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 9/187 (4%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L+ LG + I+L P + S Y D + + +G+ + LK +V + H+ G++++ D V
Sbjct: 185 LADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAV 244
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP-HFQGRGNKSSGDNFHAAPNIDHSQD 412
NH + V G + D + + P + R N + P ++ +
Sbjct: 245 FNHCGYEFAPFQDVLKN-GAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHP 303
Query: 413 FVRKDIKEWLCWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEP-YFAVGEYW-DS 466
V++ + + + E DGWRLD FW + + ++A +P + +G W D+
Sbjct: 304 EVKRYLLDVATYWIREFDIDGWRLDVANEIDHQFWREF-RQAVKALKPDVYILGLIWHDA 362
Query: 467 LSYTYGE 473
+ + G+
Sbjct: 363 MPWLRGD 369
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETYAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 348
K L LG VIWL P ES + + GY D + + +G +++ +++++ H+ MK+
Sbjct: 36 KLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKL 95
Query: 349 LGDVVLNHRCAHYQNQNGVWNIFGGRLNWDD--RAVVADDPHFQGRGNKSSGDNFHAA-- 404
+ D+V+NH + W I R + D+ R P +G+ + G F +
Sbjct: 96 MMDLVVNHTSDEHN-----WFI-ESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAW 149
Query: 405 ------------------PNIDHSQDFVRKDIKEWL-CWLRNEIGYDGWRLDFV 439
P+++ + VR+D+ E + WL E G DG+R+D +
Sbjct: 150 QYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFWL--EKGIDGFRMDVI 201
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 289 EKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
EK L LG ++W+ P S + + GY D Y + +G +D+ +++ + H G+K
Sbjct: 35 EKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLK 94
Query: 348 ILGDVVLNH 356
++ D+V+NH
Sbjct: 95 VILDLVINH 103
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
++ LG + IWL P +S S GY D Y ++ YG +++ +V H G+K++ D+
Sbjct: 44 IADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGTLEDFHKLVEAAHQRGIKVIIDLP 103
Query: 354 LNH 356
+NH
Sbjct: 104 INH 106
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 294 LSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349
++ LGF+ +W P E + S GY D Y + RYG+ ++ + + GM ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 350 GDVVLNHRCAHYQNQNGV----WNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNF--- 401
DVVL+H H+ + W +GG+ + V DP+ ++ +NF
Sbjct: 217 QDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPY----AAQADSENFTKG 272
Query: 402 ---HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY---LEATE 455
P+++ + V + + W G G R+D G ++ +Y L A
Sbjct: 273 WFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEY 332
Query: 456 PYF-AVGEYWDS 466
P VGE W +
Sbjct: 333 PRLNMVGEEWST 344
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 117/317 (36%), Gaps = 68/317 (21%)
Query: 279 KSGRWYMELKEKATELSSLGFSVIWLPP--PTESVSPEG-----YMPRDLYNLSSRYGNI 331
+ G+ ++ L++ L +G + +WL P PT +G Y RD Y + G
Sbjct: 19 EKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYEIDLLIGTK 78
Query: 332 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 391
+ K V + H++ M +L D+VLNH D +V P +
Sbjct: 79 GDFKKFVKRAHELNMYVLMDMVLNHAAV-------------------DNVLVKKHPEWFL 119
Query: 392 RGNKSSGDNFHAAP------NIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV----RG 441
R +G+ P + D+S +R+ + + + E DG+R D
Sbjct: 120 R--DENGNPTRKVPDWSDVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLVPLD 177
Query: 442 FWGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDV 501
FW K+ L+ + + E D Y ++ ++ D + R D+I +
Sbjct: 178 FWLQARKN-LDPVKRLIWISETHDPYMYQAFDITYDYDGY-YRFRDFIEGKN-------- 227
Query: 502 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGRE- 560
S + ++ R+ D P G + + F+ENHD RE
Sbjct: 228 -------SLREYIDFLRMQDHM-YPRGYI------KMRFLENHDQPRVAKFL----SRES 269
Query: 561 -MQGYAYILTHPGTPSV 576
M A++ T G P V
Sbjct: 270 LMHWIAFLFTVKGVPLV 286
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 32/181 (17%)
Query: 284 YMELKEKATELSSLGFSVIWLPPPTES------VSPE--------GYMPRDLYNLSSRY- 328
Y KA+ L+SLG + + P E+ V P GYM + ++ RY
Sbjct: 204 YYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYA 263
Query: 329 ------GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWN----IFGGRLNWD 378
G E + +V FH+ G+K+ DVV NH + G W +W
Sbjct: 264 YNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTA-----EGGTWTSSDPTTATIYSW- 317
Query: 379 DRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 438
R + + GN+ DN N + + I + L + N +G DG+R D
Sbjct: 318 -RGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDL 376
Query: 439 V 439
Sbjct: 377 A 377
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 127/321 (39%), Gaps = 63/321 (19%)
Query: 294 LSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
L+ +G + IW+ P E+V S GY RD + +G + + + +V+ H
Sbjct: 63 LTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAH 122
Query: 343 DVGMKILGDVVLNHRC-AHYQNQNGVWNIFGGRLNWDDRAVVA---DDP----HFQGRGN 394
G+K++ D NH A N + + N GRL +D+ ++ +D H G
Sbjct: 123 AKGIKVIIDFAPNHTSPASETNPSYMEN---GRL-YDNGTLLGGYTNDANMYFHHNGGTT 178
Query: 395 KSS------------GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 442
SS D H P ID +++ +K W+ ++G DG R+D V+
Sbjct: 179 FSSLEDGIYRNLFDLADLNHQNPVIDR---YLKDAVKMWI-----DMGIDGIRMDAVKHM 230
Query: 443 ---WGGYVKDYLEATEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAF 499
W + D ++ P F GE++ S + + + ++D+ F
Sbjct: 231 PFGWQKSLMDEIDNYRPVFTFGEWFLSENEVDANNHYFANESGMSLLDF---------RF 281
Query: 500 DVTTKGILHSALDRCEYWR--LSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG 557
+ +L + D + + D V+ VTFI+NHD P
Sbjct: 282 GQKLRQVLRNNSDNWYGFNQMIQDTASAYDEVL-----DQVTFIDNHDMDRFMIDGGDPR 336
Query: 558 GREMQGYAYILTHPGTPSVFY 578
+M A +LT G P+++Y
Sbjct: 337 KVDM-ALAVLLTSRGVPNIYY 356
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRL+ FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLNVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRL+ FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLNVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VGE W S
Sbjct: 350 LIVGEIWHDAS 360
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 294 LSSLGFSVIWLPP--PTESVSPEG-----YMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+ LG ++WL P P V+ +G Y +D ++ YG + + K + ++ H++GM
Sbjct: 39 IKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELGM 98
Query: 347 KILGDVVLNH 356
K++ D+V NH
Sbjct: 99 KVMLDIVYNH 108
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 294 LSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349
++ LGF+ +W P E + S GY D Y + RYG+ ++ + + GM ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 350 GDVVLNHRCAHYQNQNGV----WNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNF--- 401
DVVL+H H+ + W +GG+ + V DP+ ++ +NF
Sbjct: 217 QDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPY----AAQADSENFTKG 272
Query: 402 ---HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY---LEATE 455
P+++ + V + + W G G R+D G ++ +Y L A
Sbjct: 273 WFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEY 332
Query: 456 PYF-AVGEYWDS 466
P VG+ W +
Sbjct: 333 PRLNMVGQEWST 344
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 23/192 (11%)
Query: 294 LSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349
++ LGF+ +W P E + S GY D Y + RYG+ ++ + + GM ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLI 216
Query: 350 GDVVLNHRCAHYQNQNGV----WNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNF--- 401
DVVL+H H+ + W +GG+ + V DP+ ++ +NF
Sbjct: 217 QDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPY----AAQADSENFTKG 272
Query: 402 ---HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY---LEATE 455
P+++ + V + + W G G R+D G ++ +Y L A
Sbjct: 273 WFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLMAEY 332
Query: 456 PYF-AVGEYWDS 466
P VG+ W +
Sbjct: 333 PRLNMVGQEWST 344
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 289 EKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
EK L +LG IW+ P +S + + GY RD + YG +++ ++++ M+
Sbjct: 35 EKLDYLKALGIDAIWINPHYDSPNTDNGYDIRDYRKIMKEYGTMEDFDRLISEMKKRNMR 94
Query: 348 ILGDVVLNH 356
++ DVV+NH
Sbjct: 95 LMIDVVINH 103
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 353
L LG + ++ P S S Y D + ++G++ + +V++ H G+KI+ D V
Sbjct: 182 LEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAV 241
Query: 354 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-------AAPN 406
NH + V G + + D + D P +K+S N+ A P
Sbjct: 242 FNHAGDQFFAFRDVLQK-GEQSRYKDWFFIEDFP-----VSKTSRTNYETFAVQVPAMPK 295
Query: 407 IDHSQDFVRKDIKEWL-----CWLRNEIGYDGWRLDFV----RGFWGGYVKDYLEATEPY 457
+ ++KE+L W+ E G DGWRLD FW + +
Sbjct: 296 LRTEN----PEVKEYLFDVARFWM--EQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDA 349
Query: 458 FAVGEYWDSLS 468
VG W S
Sbjct: 350 LIVGAIWHDAS 360
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+KEK L +LG + I+L P S++ GY D ++++ R G D++++ +
Sbjct: 241 IKEKIDHLVNLGINAIYLTPIFSSLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDI 300
Query: 347 KILGDVVLNHRCAHY--------QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSS- 397
K++ D V +H + + +N + F + + V Q +KSS
Sbjct: 301 KVILDGVFHHTSFFHPYFQDVVRKGENSSFKNFYRIIKFP----VVSKEFLQILHSKSSW 356
Query: 398 ----------GDNFHA------APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441
G N+ + P ++H VR+ IK + + N+ G DG+R+D G
Sbjct: 357 EEKYKKIKSLGWNYESFFSVWIMPRLNHDNPKVREFIKNVILFWTNK-GVDGFRMDVAHG 415
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 34 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 94 MRLMVDVVINHSSDQHE 110
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 61 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 120
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 121 MRLMVDVVINHSSDQHE 137
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 33 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 93 MRLMVDVVINHSSDQHE 109
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 33 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 93 MRLMVDVVINHSSDQHE 109
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 34 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 94 MRLMVDVVINHSSDQHE 110
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 33 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 93 MRLMVDVVINHSSDQHE 109
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 294 LSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 349
++ LGF+ +W P E + S GY D Y + RYG+ ++ + + G ++
Sbjct: 157 IAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGXGLI 216
Query: 350 GDVVLNHRCAHYQNQNGV----WNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNF--- 401
DVVL+H H+ + W +GG+ + V DP+ ++ +NF
Sbjct: 217 QDVVLSHIGKHHWWXKDLPTPDWINYGGKFVPTQHHRVAVQDPY----AAQADSENFTKG 272
Query: 402 ---HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDY---LEATE 455
P+++ + V + + W G G R+D G ++ +Y L A
Sbjct: 273 WFVEGXPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRIDTYGYSDGAFLTEYTRRLXAEY 332
Query: 456 PYF-AVGEYWDS 466
P VGE W +
Sbjct: 333 PRLNXVGEEWST 344
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
L EK L LG IW+ P S + + GY D + YG +++ ++ + G
Sbjct: 34 LTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93
Query: 346 MKILGDVVLNHRCAHYQ 362
M+++ DVV+NH ++
Sbjct: 94 MRLMVDVVINHSSDQHE 110
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+ +K L+ LG +WL P +S GY D ++ + G + +V + H+ G+
Sbjct: 62 VTQKLDYLNQLGVKALWLSPIHPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGI 121
Query: 347 KILGDVVLNH 356
KI D V+NH
Sbjct: 122 KIYLDYVMNH 131
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 289 EKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
EK L SLG IW+ P +S + + GY + + YG +++ +V + M+
Sbjct: 49 EKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMR 108
Query: 348 ILGDVVLNH 356
++ DVV+NH
Sbjct: 109 LMIDVVINH 117
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL---YNLSSRYGNIDELKDVV 338
W +E L G++ + + PP E ++ + R Y L SR GN + D+V
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMV 71
Query: 339 NKFHDVGMKILGDVVLNHRCA 359
N+ G+ I D ++NH A
Sbjct: 72 NRCSAAGVDIYVDTLINHMAA 92
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL---YNLSSRYGNIDELKDVV 338
W +E L G++ + + PP E ++ + R Y L SR GN + D+V
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMV 71
Query: 339 NKFHDVGMKILGDVVLNHRCA 359
N+ G+ I D ++NH A
Sbjct: 72 NRCSAAGVDIYVDTLINHMAA 92
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL---YNLSSRYGNIDELKDVV 338
W +E L G++ + + PP E ++ + R Y L SR GN + D+V
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMV 71
Query: 339 NKFHDVGMKILGDVVLNHRCA 359
N+ G+ I D ++NH A
Sbjct: 72 NRCSAAGVDIYVDTLINHMAA 92
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL---YNLSSRYGNIDELKDVV 338
W +E L G++ + + PP E ++ + R Y L SR GN + D+V
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMV 71
Query: 339 NKFHDVGMKILGDVVLNHRCA 359
N+ G+ I D ++NH A
Sbjct: 72 NRCSAAGVDIYVDTLINHMAA 92
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL---YNLSSRYGNIDELKDVV 338
W +E L G++ + + PP E ++ + R Y L SR GN + D+V
Sbjct: 12 NWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMV 71
Query: 339 NKFHDVGMKILGDVVLNHRCA 359
N+ G+ I D ++NH A
Sbjct: 72 NRCSAAGVDIYVDTLINHMAA 92
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+ +K L+ LG +WL P S GY D ++ + G + +V + H+ G+
Sbjct: 62 VTQKLDYLNQLGVKALWLSPIHPCXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGI 121
Query: 347 KILGDVVLNH 356
KI D V NH
Sbjct: 122 KIYLDYVXNH 131
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 294 LSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 352
L LG IWL P +S + GY D + +YG + ++ ++++K + +KI+ D+
Sbjct: 41 LEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDL 100
Query: 353 VLNHRCAHYQ 362
V+NH ++
Sbjct: 101 VVNHTSDQHK 110
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS---RYGNIDELKDVVNKFHD 343
+ K + LG IW+ P +S P+ M D+ N YG ++ ++ K H
Sbjct: 42 IASKLEYIKELGADAIWISPFYDS--PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHK 99
Query: 344 VGMKILGDVVLNHRCAHYQ 362
+GMK + D+V+NH + ++
Sbjct: 100 LGMKFITDLVINHCSSEHE 118
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS---RYGNIDELKDVVNKFHD 343
+ K + LG IW+ P +S P+ M D+ N YG ++ ++ K H
Sbjct: 42 IASKLEYIKELGADAIWISPFYDS--PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHK 99
Query: 344 VGMKILGDVVLNHRCAHYQ 362
+GMK + D+V+NH + ++
Sbjct: 100 LGMKFITDLVINHCSSEHE 118
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 274 NWESHKSGRWYMELKEKATELSS----LGFSVIWLPPPTESV--SPEGYMPRDLYNLSSR 327
+W H +++ +E A +L +GF+ + L P E GY P LY + R
Sbjct: 141 SWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRR 200
Query: 328 YGNIDELKDVVNKFHDVGMKILGDVVLNH 356
+G D+ + ++ H G+ ++ D V H
Sbjct: 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGH 229
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 315 GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356
GY + + +SSR G ++LK +V+K H +G+++L DVV +H
Sbjct: 234 GYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSH 275
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
+ K L LG IWL P +S + GY + ++ +GN+ ++ +++ + G
Sbjct: 33 ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 346 MKILGDVVLNH 356
+KI+ D+V+NH
Sbjct: 93 IKIIMDLVVNH 103
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 287 LKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 345
+ K L LG IWL P +S + GY + ++ +GN+ ++ +++ + G
Sbjct: 33 ITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRG 92
Query: 346 MKILGDVVLNH 356
+KI+ D+V+NH
Sbjct: 93 IKIIMDLVVNH 103
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 315 GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356
GY + + +SSR G ++LK +V+K H +G+++L DVV +H
Sbjct: 234 GYHVTNFFAVSSRSGTPEDLKYLVDKAHSLGLRVLMDVVHSH 275
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L+ LG +VI + P + G Y LY S YG D+ K ++ H G+
Sbjct: 159 KLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLS 218
Query: 348 ILGDVVLNH 356
++ D+VLNH
Sbjct: 219 VVLDIVLNH 227
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG------YMPRDLYNLSSRYGNIDELK 335
+W E L GF + + PP E + +G Y P Y +++R GN
Sbjct: 20 KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVS-YIINTRSGNESAFT 78
Query: 336 DVVNKFHDVGMKILGDVVLNH 356
D+ + +D G++I D V+NH
Sbjct: 79 DMTRRCNDAGVRIYVDAVINH 99
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L LG + I + P + GY LY + + YG + + +V++ H G+
Sbjct: 124 KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 183
Query: 348 ILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
++ DVV NH G N+ +V P+F + G F+
Sbjct: 184 VILDVVYNH--------------VGPEGNY----MVKLGPYFSQKYKTPWGLTFNFD--- 222
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441
D D VRK I E + + E DG+RLD V
Sbjct: 223 DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHA 256
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L LG + I + P + GY LY + + YG + + +V++ H G+
Sbjct: 124 KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 183
Query: 348 ILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
++ DVV NH G N+ +V P+F + G F+
Sbjct: 184 VILDVVYNH--------------VGPEGNY----MVKLGPYFSQKYKTPWGLTFNFD--- 222
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441
D D VRK I E + + E DG+RLD V
Sbjct: 223 DAESDEVRKFILENVEYWIKEYNVDGFRLDAVHA 256
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L LG + I + P + GY LY + + YG + + +V++ H G+
Sbjct: 124 KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 183
Query: 348 ILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
++ DVV NH G N+ +V P+F + G F+
Sbjct: 184 VILDVVYNH--------------VGPEGNY----MVKLGPYFSQKYKTPWGLTFNFD--- 222
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 439
D D VRK I E + + E DG+RLD V
Sbjct: 223 DAESDEVRKFILENVEYWIKEYNVDGFRLDAV 254
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 294 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG-----NIDELKDVVNKFHDVGMKI 348
L +G S W GY P ++ L Y +DE +D + H G+++
Sbjct: 210 LQRMGLSNYW-----------GYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEV 258
Query: 349 LGDVVLNH 356
+ D+VLNH
Sbjct: 259 ILDIVLNH 266
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/315 (20%), Positives = 116/315 (36%), Gaps = 52/315 (16%)
Query: 303 WLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 362
W P +PEG + ++ +R ELK ++N H G++++ DVV NH Y+
Sbjct: 290 WGYNPLHFFAPEGSYASNPHDPQTRK---TELKQMINTLHQHGLRVILDVVFNHV---YK 343
Query: 363 NQNGVW--NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 420
+N + + G D+ G+ + +G +I + RK I +
Sbjct: 344 RENSPFEKTVPGYFFRHDE----------CGKPSNGTG----VGNDIASERRMARKFIAD 389
Query: 421 WLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEP-YFAVGEYWDSLSYTYGEMD 475
+ + E DG+R D + G Y+K+ +P GE WD + +
Sbjct: 390 CVVYWLEEYNVDGFRFDLL-GILDIDTVLYMKEKATKAKPGILLFGEGWDLAT----PLP 444
Query: 476 HNQ-----DAHRQRIIDWIN-----AASGTAGAFDVTTKGILHSALDRCEYWRLSDEKG- 524
H Q +A R I + N A G T + + + ++ G
Sbjct: 445 HEQKAALANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIAGSSGW 504
Query: 525 KPPGVVGWWPSRAVTFIENHDTGSTQGHWRFP---------GGREMQGYAYILTHPGTPS 575
K + PS+++ ++E+HD + F R+ A IL G P
Sbjct: 505 KALAPIVPEPSQSINYVESHDNHTFWDKMSFALPQENDSRKRSRQRLAVAIILLAQGVPF 564
Query: 576 VFYDHIFSHYRQEIE 590
+ F +Q +E
Sbjct: 565 IHSGQEFFRTKQGVE 579
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 282 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG------YMPRDLYNLSSRYGNIDELK 335
+W E L GF + + PP E + +G Y P Y +++R G+
Sbjct: 20 KWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVS-YIINTRSGDESAFT 78
Query: 336 DVVNKFHDVGMKILGDVVLNH 356
D+ + +D G++I D V+NH
Sbjct: 79 DMTRRCNDAGVRIYVDAVINH 99
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 315 GYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361
GY P+ + LS Y I ELK +++ H GM ++ DVV NH Y
Sbjct: 345 GYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTY 399
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 41/206 (19%)
Query: 287 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 346
+ EK L LG I+L P S + Y D + + G + L+ ++ H G+
Sbjct: 52 VAEKLPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGV 111
Query: 347 KILGDVVLNHR-----CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF 401
+++ D V NH + +NG +++ D H +G K+ +
Sbjct: 112 RVILDGVFNHTGRGFFAFQHLXENG------------EQSPYRDWYHVKGFPLKA----Y 155
Query: 402 HAAPNIDH--------SQDFVRKDIKEWLC-----WLRNEIGYDGWRLDFVR-----GFW 443
A PN + ++E+L W+R G DGWRLD FW
Sbjct: 156 TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHWIR--FGVDGWRLDVPNEIPDPTFW 213
Query: 444 GGYVKDYLEATEPYFAVGEYWDSLSY 469
+ + A + VGE W+ +
Sbjct: 214 REFRQRVKGANPEAYIVGEIWEEADF 239
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L LG + I + P + GY LY + + YG + + +V++ H G+
Sbjct: 124 KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 183
Query: 348 ILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
++ DVV NH G N+ +V P+F + G F+
Sbjct: 184 VILDVVYNH--------------VGPEGNY----MVKLGPYFSQKYKTPWGLTFNFD--- 222
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441
D D VRK I E + + E DG+RL+ V
Sbjct: 223 DAESDEVRKFILENVEYWIKEYNVDGFRLEAVHA 256
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 315 GYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRC 358
GY P++ ++L+ Y + I E K+++N+ H GM + DVV NH
Sbjct: 537 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 588
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 315 GYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRC 358
GY P++ ++L+ Y + I E K+++N+ H GM + DVV NH
Sbjct: 230 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 281
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 315 GYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRC 358
GY P++ ++L+ Y + I E K+++N+ H GM + DVV NH
Sbjct: 231 GYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTA 282
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 65 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 123
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 124 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 163
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 65 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 123
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 124 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 163
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 65 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 123
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 124 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 163
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 65 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 123
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 124 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 163
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 65 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 123
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 124 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 163
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 290 KATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 347
K L LG + I + P + GY LY + + YG + + +V++ H G+
Sbjct: 124 KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLG 183
Query: 348 ILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNI 407
++ DVV NH G N+ +V P+F + G F+
Sbjct: 184 VILDVVYNH--------------VGPEGNY----MVKLGPYFSQKYKTPWGLTFNFD--- 222
Query: 408 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 441
D D VRK I E + + E DG+RL V
Sbjct: 223 DAESDEVRKFILENVEYWIKEYNVDGFRLSAVHA 256
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 277 SHKSGRWYMELKEKATE-LSSLGFSVIWLPPPTES--VSPEGYMPRDLYNLSSRYGNIDE 333
S + G Y +L + T+ + GF+ + L P E GY Y +SR+G D+
Sbjct: 255 SWRPGLSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDD 314
Query: 334 LKDVVNKFHDVGMKILGDVVLNH 356
+ +V+ H G+ ++ D V H
Sbjct: 315 FRALVDALHQAGIGVIVDWVPAH 337
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 315 GYMPRDLYNLSSRY-------GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ----- 362
GY P + ++ RY G + K +VN+ H+ G++++ DVV NH
Sbjct: 243 GYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHLGPTL 302
Query: 363 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQ--DFVRKDIKE 420
+ G+ N L D++ D F G GN N+ H + V ++
Sbjct: 303 SFRGIDNTAYYMLQPDNKRYYLD---FTGTGN---------TLNLSHPRVIQMVLDSLRY 350
Query: 421 WLCWLRNEIGYDGWRLDF 438
W+ E+ DG+R D
Sbjct: 351 WVT----EMHVDGFRFDL 364
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 287 LKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 343
++E+ L LG + L P P E + GY +D + G +D+L +
Sbjct: 113 VEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSALARALRG 172
Query: 344 VGMKILGDVVLNH 356
G+ ++ D+VLNH
Sbjct: 173 RGISLVLDLVLNH 185
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 284 YMELKEKATELSSLGFSVIWLPPPT--ESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKF 341
Y EK L LG + I + P + GY Y + YG ++L +V+
Sbjct: 143 YRAAAEKLPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLXALVDAA 202
Query: 342 HDVGMKILGDVVLNH 356
H +G+ + DVV NH
Sbjct: 203 HRLGLGVFLDVVYNH 217
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 32 GVNWFGFETCNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 90
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 91 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 130
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 272 GFNWESHKS------GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL-YNL 324
G NW ++ G W ++ ++ SLGF+ I LP TESV P G P + Y+
Sbjct: 32 GVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRLPFCTESVKP-GTQPIGIDYSK 90
Query: 325 SSRYGNIDELK---DVVNKFHDVGMKILGDVVLNHR--CAHYQ 362
+ +D L+ ++ K D+G+ +L D HR C H +
Sbjct: 91 NPDLRGLDSLQIMEKIIKKAGDLGIFVLLDY---HRIGCTHIE 130
>pdb|1OS5|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Novel Non-Competitive Inhibitor
Length = 576
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSSR VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKYGYGAKDVRNLSSR---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|3FRZ|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With
Length = 576
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSSR VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKYGYGAKDVRNLSSR---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2HAI|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase In Complex
With Novel Class Of Dihydropyrone-Containing Inhibitor
Length = 576
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSSR VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKYGYGAKDVRNLSSR---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 284 YMELKEKATELSSLGFSVIWLPPPT--ESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKF 341
Y EK L LG + I + P + GY Y + YG ++L +V+
Sbjct: 143 YRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAA 202
Query: 342 HDVGMKILGDVVLNH 356
H +G+ + DVV NH
Sbjct: 203 HRLGLGVFLDVVYNH 217
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 284 YMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKF 341
+ E++ + LG + ++L P ++ S GY D ++ G +E ++++
Sbjct: 14 FSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEA 73
Query: 342 HDVGMKILGDVVLNHRCAHYQN 363
G+ I+ D+V NH H+ N
Sbjct: 74 KSKGLGIIQDIVPNHMAVHHTN 95
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 269 LCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSS 326
L + FN+ WY LG S ++L P + S GY D ++
Sbjct: 10 LNKNFNFGDVIDNLWY---------FXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRIND 60
Query: 327 RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 363
G E + ++ H +G+ I+ D+V NH + N
Sbjct: 61 ELGGEKEYRRLIETAHTIGLGIIQDIVPNHMAVNSLN 97
>pdb|2DXS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
pdb|2DXS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase Complexed
With A Tetracyclic Inhibitor
Length = 552
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2AWZ|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AWZ|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5h)
pdb|2AX0|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX0|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5x)
pdb|2AX1|A Chain A, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
pdb|2AX1|B Chain B, Hepatitis C Virus Ns5b Rna Polymerase In Complex With A
Covalent Inhibitor (5ee)
Length = 580
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 117 KGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDF 151
K SR++ +D++F+ + LKL+EN + C EN F
Sbjct: 226 KKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTF 260
>pdb|4EO6|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO6|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|A Chain A, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
pdb|4EO8|B Chain B, Hcv Ns5b Polymerase Inhibitors: Tri-Substituted
Acylhydrazines As Tertiary Amide Bioisosteres
Length = 577
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 77 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 127
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 128 SVWKDLLEDTV 138
>pdb|3MF5|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
pdb|3MF5|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk) With Amide
Bioisostere Thumb Site Inhibitor
Length = 570
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
Hepatitis C Virus
pdb|2GC8|A Chain A, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2GC8|B Chain B, Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv
Ns5b Polymerase
pdb|2QE2|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE2|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|A Chain A, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|B Chain B, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|C Chain C, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|2QE5|D Chain D, Structure Of Hcv Ns5b Bound To An Anthranilic Acid
Inhibitor
pdb|3VQS|A Chain A, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|B Chain B, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|C Chain C, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
pdb|3VQS|D Chain D, Crystal Structure Of Hcv Ns5b Rna Polymerase With A Novel
Piperazine Inhibitor
Length = 578
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2BRK|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 1)
pdb|2BRL|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With An Allosteric Inhibitor (Compound 2)
pdb|2WHO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WHO|B Chain B, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase
From 1b Genotype In Complex With A Non-Nucleoside
Inhibitor
pdb|2WRM|A Chain A, Identification Of Novel Allosteric Inhibitors Of Hepatitis
C Virus Ns5b Polymerase Thumb Domain (Site Ii) By
Structure-Based Design
Length = 536
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|3HHK|A Chain A, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
pdb|3HHK|B Chain B, Hcv Ns5b Polymerase Complex With A Substituted
Benzothiadizine
Length = 563
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2FVC|A Chain A, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
pdb|2FVC|B Chain B, Crystal Structure Of Ns5b Bk Strain (Delta 24) In Complex
With A 3-(1,1-Dioxo-2h-(1,2,4)-Benzothiadiazin-3-Yl)-4-
Hydroxy-2(1h)-Quinolinone
Length = 563
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1NHU|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHU|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
pdb|1NHV|B Chain B, Hepatitis C Virus Rna Polymerase In Complex With Non-
Nucleoside Analogue Inhibitor
Length = 578
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 78 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 128
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 129 SVWKDLLEDTV 139
>pdb|2WCX|A Chain A, Crystal Structure Of Hepatitis C Virus Ns5b Polymerase In
Complex With Thienopyrrole-Based Finger-Loop Inhibitors
pdb|2XWY|A Chain A, Structure Of Mk-3281, A Potent Non-Nucleoside Finger-Loop
Inhibitor, In Complex With The Hepatitis C Virus Ns5b
Polymerase
Length = 537
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 71 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 121
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 122 SVWKDLLEDTV 132
>pdb|2ZKU|A Chain A, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|B Chain B, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|C Chain C, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|2ZKU|D Chain D, Structure Of Hepatitis C Virus Ns5b Polymerase In A New
Crystal Form
pdb|3PHE|A Chain A, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|B Chain B, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|C Chain C, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3PHE|D Chain D, Hcv Ns5b With A Bound Quinolone Inhibitor
pdb|3UDL|A Chain A, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|B Chain B, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|C Chain C, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
pdb|3UDL|D Chain D, 3-Heterocyclyl Quinolone Bound To Hcv Ns5b
Length = 576
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 76 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 126
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 127 SVWKDLLEDTV 137
>pdb|2D3U|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3U|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D3Z|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Analogue
Inhibitor
pdb|2D41|A Chain A, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
pdb|2D41|B Chain B, X-Ray Crystal Structure Of Hepatitis C Virus Rna-Dependent
Rna Polymerase In Complex With Non-Nucleoside Inhibitor
Length = 570
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2I1R|A Chain A, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2I1R|B Chain B, Novel Thiazolones As Hcv Ns5b Polymerase Inhibitors:
Further Designs, Synthesis, Sar And X-Ray Complex
Structure
pdb|2HWH|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWH|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|A Chain A, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2HWI|B Chain B, Hcv Ns5b Allosteric Inhibitor Complex
pdb|2IJN|A Chain A, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2IJN|B Chain B, Isothiazoles As Active-Site Inhibitors Of Hcv Ns5b
Polymerase
pdb|2O5D|A Chain A, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
pdb|2O5D|B Chain B, Thiazolone-Acylsulfonamides As Novel Hcv Ns5b Polymerase
Allosteric Inhibitors: Convergence Of Structure-Based
Drug Design And X-Ray Crystallographic Study
Length = 576
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 76 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 126
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 127 SVWKDLLEDTV 137
>pdb|2GIQ|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIQ|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-2 Inhibitor
pdb|2GIR|A Chain A, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
pdb|2GIR|B Chain B, Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b With
Nni-1 Inhibitor
Length = 568
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 76 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 126
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 127 SVWKDLLEDTV 137
>pdb|3BR9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BR9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSA|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3BSC|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CO9|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CDE|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CVK|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3CWJ|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D28|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D28|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Benzisothiazole Inhibitor
pdb|3D5M|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3D5M|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3E51|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Pyridazinone Inhibitor
pdb|3GYN|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3GYN|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydropyridinone Inhibitor
pdb|3H2L|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3H2L|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase In Complex With A
Novel Bicyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|A Chain A, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
pdb|3IGV|B Chain B, Crystal Structure Of Hcv Ns5b Polymerase With A Novel
Monocyclic Dihydro-Pyridinone Inhibitor
Length = 578
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|2JC0|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC0|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb655264
pdb|2JC1|A Chain A, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
pdb|2JC1|B Chain B, Crystal Structure Of Hepatitis C Virus Polymerase In
Complex With Inhibitor Sb698223
Length = 570
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|3AIB|A Chain A, Crystal Structure Of Glucansucrase
pdb|3AIB|B Chain B, Crystal Structure Of Glucansucrase
pdb|3AIB|C Chain C, Crystal Structure Of Glucansucrase
pdb|3AIB|D Chain D, Crystal Structure Of Glucansucrase
pdb|3AIB|G Chain G, Crystal Structure Of Glucansucrase
pdb|3AIB|E Chain E, Crystal Structure Of Glucansucrase
pdb|3AIB|F Chain F, Crystal Structure Of Glucansucrase
pdb|3AIB|H Chain H, Crystal Structure Of Glucansucrase
pdb|3AIC|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIC|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|A Chain A, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|B Chain B, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|C Chain C, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|D Chain D, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|E Chain E, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|F Chain F, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|G Chain G, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
pdb|3AIE|H Chain H, Crystal Structure Of Glucansucrase From Streptococcus
Mutans
Length = 844
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 309 ESVSPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKILGD 351
+SV GY D Y+L ++YG D+L + H G+K++ D
Sbjct: 666 DSVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKGIKVMAD 712
>pdb|3CIZ|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CIZ|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ0|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Small Molecule Fragments
pdb|3CJ2|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ2|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ3|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ4|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|A Chain A, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3CJ5|B Chain B, Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna
Polymerase Ns5b In Complex With Optimized Small Molecule
Fragments
pdb|3FQK|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3FQK|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Hcv-796
Inhibitor
pdb|3G86|A Chain A, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3G86|B Chain B, Hepatitis C Virus Polymerase Ns5b (Bk 1-570) With Thiazine
Inhibitor
pdb|3H59|A Chain A, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H59|B Chain B, Hepatitis C Virus Polymerase Ns5b With Thiazine Inhibitor
2
pdb|3H5S|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5S|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
pdb|3H5U|A Chain A, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H5U|B Chain B, Hepatitis C Virus Polymerase Ns5b With Saccharin Inhibitor
1
pdb|3H98|A Chain A, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
pdb|3H98|B Chain B, Crystal Structure Of Hcv Ns5b 1b With (1,1-Dioxo-2h-[1,2,
4]benzothiadiazin-3-Yl) Azolo[1,5-A]pyrimidine
Derivative
Length = 576
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E+K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 76 EMKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 126
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 127 SVWKDLLEDTV 137
>pdb|3TTO|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|B Chain B, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|C Chain C, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTO|D Chain D, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Triclinic Form
pdb|3TTQ|A Chain A, Crystal Structure Of Leuconostoc Mesenteroides Nrrl B-1299
N- Terminally Truncated Dextransucrase Dsr-E In
Orthorhombic Apo-Form At 1.9 Angstrom Resolution
Length = 1108
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 309 ESVSPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKILGDVVLNH 356
+S GY D Y+L ++YG +L+ + H M+++ DVV N
Sbjct: 886 DSTIDNGYAFTDRYDLGFNTPTKYGTDGDLRATIQALHHANMQVMADVVDNQ 937
>pdb|1CSJ|A Chain A, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
pdb|1CSJ|B Chain B, Crystal Structure Of The Rna-dependent Rna Polymerase Of
Hepatitis C Virus
Length = 531
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EXKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1GX6|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Utp And
Manganese
Length = 531
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EXKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1GX5|A Chain A, Hepatitis C Virus Rna Polymerase In Complex With Gtp And
Manganese
Length = 536
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 70 EXKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 120
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 121 SVWKDLLEDTV 131
>pdb|1C2P|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Length = 576
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 286 ELKEKATELSSLGFSV---IWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 342
E K KA+ + + SV L PP + S GY +D+ NLSS+ VN H
Sbjct: 76 EXKAKASTVKAKLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSK---------AVNHIH 126
Query: 343 DVGMKILGDVV 353
V +L D V
Sbjct: 127 SVWKDLLEDTV 137
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 316 YMPRDLYNLSSRY-GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 361
Y P Y + +RY G+ +E K++ + G+K++ D V+NH + Y
Sbjct: 59 YQPTS-YQIGNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHTTSDY 104
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 249 LEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPT 308
L+ + P +I+ GFE N+ H G W + + ++ SLG++ I LP
Sbjct: 14 LDANNVPVRIAGINWFGFETC----NYVVH--GLWSRDYRSMLDQIKSLGYNTIRLPYSD 67
Query: 309 ESVSPEGYMPR--DLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG 366
+ + P G MP + Y ++ + L+ V++K +I ++L+ Q+
Sbjct: 68 DILKP-GTMPNSINFYQMNQDLQGLTSLQ-VMDKIVAYAGQIGLRIILDRHRPDCSGQSA 125
Query: 367 VW 368
+W
Sbjct: 126 LW 127
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 249 LEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPT 308
L+ + P +I+ GFE N+ H G W + + ++ SLG++ I LP
Sbjct: 14 LDANNVPVRIAGINWFGFETC----NYVVH--GLWSRDYRSMLDQIKSLGYNTIRLPYSD 67
Query: 309 ESVSPEGYMPR--DLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNG 366
+ + P G MP + Y ++ + L+ V++K +I ++L+ Q+
Sbjct: 68 DILKP-GTMPNSINFYQMNQDLQGLTSLQ-VMDKIVAYAGQIGLRIILDRHRPDCSGQSA 125
Query: 367 VW 368
+W
Sbjct: 126 LW 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,789,998
Number of Sequences: 62578
Number of extensions: 997569
Number of successful extensions: 2944
Number of sequences better than 100.0: 216
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2387
Number of HSP's gapped (non-prelim): 347
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)